Query 002453
Match_columns 920
No_of_seqs 204 out of 1128
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 00:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 1.2E-90 2.6E-95 757.1 76.4 861 1-918 1-919 (982)
2 KOG2081 Nuclear transport regu 100.0 5.6E-70 1.2E-74 574.7 51.6 549 26-622 2-557 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 1.3E-55 2.8E-60 472.7 57.7 803 7-856 3-872 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 2.2E-51 4.7E-56 431.3 62.7 848 6-910 13-954 (1053)
5 KOG2023 Nuclear transport rece 100.0 7.8E-39 1.7E-43 339.9 40.5 656 19-850 24-730 (885)
6 KOG2171 Karyopherin (importin) 100.0 9.5E-32 2.1E-36 306.6 48.8 600 6-735 3-614 (1075)
7 KOG2020 Nuclear transport rece 100.0 4E-29 8.6E-34 291.8 60.2 833 5-897 8-920 (1041)
8 KOG1991 Nuclear transport rece 100.0 2.7E-24 5.8E-29 241.1 64.4 574 7-664 4-630 (1010)
9 KOG1241 Karyopherin (importin) 99.9 3.5E-21 7.6E-26 209.9 60.5 596 19-736 12-647 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 5.5E-16 1.2E-20 163.8 57.3 624 19-759 16-673 (858)
11 COG5656 SXM1 Importin, protein 99.8 1.3E-13 2.8E-18 150.5 62.6 624 19-736 14-690 (970)
12 KOG1992 Nuclear export recepto 99.8 1E-12 2.2E-17 145.6 59.3 719 5-851 3-792 (960)
13 PF08389 Xpo1: Exportin 1-like 99.7 1.3E-15 2.8E-20 145.9 13.6 146 104-263 1-148 (148)
14 KOG1410 Nuclear transport rece 99.6 3.7E-08 8.1E-13 107.1 63.1 797 3-856 1-941 (1082)
15 KOG2274 Predicted importin 9 [ 99.6 2.3E-09 5.1E-14 120.7 54.2 145 7-161 4-160 (1005)
16 KOG1993 Nuclear transport rece 99.2 2E-05 4.3E-10 88.4 54.1 115 19-140 11-132 (978)
17 PF08767 CRM1_C: CRM1 C termin 99.1 2.8E-08 6.1E-13 106.3 23.4 174 723-913 67-243 (319)
18 PF03810 IBN_N: Importin-beta 98.8 8.4E-09 1.8E-13 85.8 7.2 67 28-98 1-76 (77)
19 KOG2171 Karyopherin (importin) 98.6 0.00023 5E-09 84.1 36.8 372 414-832 94-483 (1075)
20 COG5657 CSE1 CAS/CSE protein i 98.5 0.0021 4.5E-08 74.2 39.9 126 4-138 2-134 (947)
21 PF08506 Cse1: Cse1; InterPro 97.6 0.0068 1.5E-07 66.2 20.2 204 328-551 141-370 (370)
22 COG5215 KAP95 Karyopherin (imp 97.3 0.28 6E-06 54.3 27.6 111 481-603 324-440 (858)
23 KOG2023 Nuclear transport rece 97.2 0.61 1.3E-05 52.8 38.3 265 461-759 455-737 (885)
24 KOG0915 Uncharacterized conser 97.2 0.96 2.1E-05 56.1 33.1 175 374-574 987-1176(1702)
25 KOG0212 Uncharacterized conser 95.8 3.9 8.5E-05 45.7 24.2 336 453-851 13-405 (675)
26 KOG1991 Nuclear transport rece 95.7 7 0.00015 46.9 56.5 186 704-907 562-772 (1010)
27 PF03378 CAS_CSE1: CAS/CSE pro 95.2 2.6 5.7E-05 47.3 21.4 181 677-895 65-253 (435)
28 PF03378 CAS_CSE1: CAS/CSE pro 94.2 8.7 0.00019 43.3 22.3 241 570-853 27-273 (435)
29 KOG1242 Protein containing ada 93.9 15 0.00032 42.0 28.5 213 377-629 208-426 (569)
30 KOG1241 Karyopherin (importin) 93.7 18 0.00038 42.4 50.5 315 451-815 337-676 (859)
31 PF02985 HEAT: HEAT repeat; I 92.9 0.14 3.1E-06 33.4 3.3 29 530-558 1-31 (31)
32 KOG1824 TATA-binding protein-i 92.9 26 0.00057 42.0 45.8 56 681-737 566-621 (1233)
33 PRK09687 putative lyase; Provi 90.0 28 0.00062 36.7 21.2 207 9-267 25-249 (280)
34 KOG2274 Predicted importin 9 [ 89.3 57 0.0012 39.2 22.1 224 675-913 522-756 (1005)
35 PF08767 CRM1_C: CRM1 C termin 89.2 15 0.00032 39.7 16.2 169 211-394 42-223 (319)
36 PF12348 CLASP_N: CLASP N term 89.2 9.5 0.00021 38.9 14.3 139 450-603 17-163 (228)
37 PF12755 Vac14_Fab1_bd: Vacuol 86.8 3.6 7.8E-05 35.4 7.7 88 457-553 3-93 (97)
38 PF13513 HEAT_EZ: HEAT-like re 86.3 1.5 3.2E-05 33.1 4.6 50 504-554 3-55 (55)
39 PF12755 Vac14_Fab1_bd: Vacuol 85.5 5.6 0.00012 34.2 8.3 39 524-562 22-62 (97)
40 PF12348 CLASP_N: CLASP N term 84.6 42 0.0009 34.1 16.0 160 677-855 47-209 (228)
41 PF01602 Adaptin_N: Adaptin N 84.6 88 0.0019 36.5 39.1 124 19-156 53-179 (526)
42 PF13513 HEAT_EZ: HEAT-like re 83.2 1.5 3.2E-05 33.2 3.4 54 454-515 1-54 (55)
43 KOG1824 TATA-binding protein-i 82.6 1.3E+02 0.0027 36.7 57.8 62 58-122 17-78 (1233)
44 KOG0166 Karyopherin (importin) 82.1 82 0.0018 35.9 17.5 151 530-715 110-266 (514)
45 cd00020 ARM Armadillo/beta-cat 81.5 2.3 5.1E-05 37.9 4.7 94 452-556 19-120 (120)
46 COG5101 CRM1 Importin beta-rel 80.0 1.2E+02 0.0026 35.1 17.5 227 680-913 189-451 (1053)
47 COG5181 HSH155 U2 snRNP splice 80.0 55 0.0012 37.5 14.9 163 415-604 745-916 (975)
48 KOG0168 Putative ubiquitin fus 76.6 1.1E+02 0.0024 36.7 16.6 154 527-719 212-368 (1051)
49 PF13646 HEAT_2: HEAT repeats; 73.4 26 0.00056 29.1 8.6 87 10-116 2-88 (88)
50 PF12460 MMS19_C: RNAPII trans 72.6 1.7E+02 0.0037 33.0 32.0 76 793-891 338-413 (415)
51 PF10508 Proteasom_PSMB: Prote 72.1 2E+02 0.0043 33.4 30.7 131 453-602 51-191 (503)
52 PF01602 Adaptin_N: Adaptin N 71.9 2E+02 0.0044 33.5 26.1 127 454-601 93-222 (526)
53 PF08167 RIX1: rRNA processing 70.2 20 0.00043 34.5 7.9 80 45-133 30-110 (165)
54 KOG2956 CLIP-associating prote 69.5 1.4E+02 0.003 33.4 14.4 174 510-728 314-491 (516)
55 PF08064 UME: UME (NUC010) dom 69.3 58 0.0013 28.6 9.9 75 543-623 31-105 (107)
56 PF08167 RIX1: rRNA processing 68.9 1E+02 0.0022 29.6 12.5 103 790-909 37-142 (165)
57 PF14500 MMS19_N: Dos2-interac 67.7 1.1E+02 0.0023 32.0 13.1 200 524-759 37-242 (262)
58 smart00802 UME Domain in UVSB 66.7 61 0.0013 28.5 9.4 89 529-623 11-105 (107)
59 PTZ00429 beta-adaptin; Provisi 65.4 3.2E+02 0.007 33.3 24.9 95 452-561 232-331 (746)
60 PF13646 HEAT_2: HEAT repeats; 63.4 22 0.00048 29.5 6.1 57 8-70 31-87 (88)
61 KOG2160 Armadillo/beta-catenin 62.8 1.8E+02 0.0039 31.4 13.5 146 450-606 93-246 (342)
62 KOG1059 Vesicle coat complex A 60.4 3.5E+02 0.0077 32.1 28.6 55 504-562 160-216 (877)
63 KOG2753 Uncharacterized conser 58.7 2.5E+02 0.0055 29.9 14.2 75 526-603 104-179 (378)
64 PF08623 TIP120: TATA-binding 51.3 76 0.0016 30.5 7.9 99 792-913 41-139 (169)
65 COG5181 HSH155 U2 snRNP splice 50.9 4.6E+02 0.01 30.5 27.8 134 453-604 294-432 (975)
66 PF12717 Cnd1: non-SMC mitotic 50.8 40 0.00086 32.9 6.3 49 511-559 7-57 (178)
67 KOG1242 Protein containing ada 50.7 4.6E+02 0.0099 30.5 15.8 165 530-733 175-343 (569)
68 KOG2081 Nuclear transport regu 49.1 4.7E+02 0.01 30.1 16.7 93 789-894 258-350 (559)
69 KOG1992 Nuclear export recepto 48.7 4.1E+02 0.0089 32.1 14.4 176 703-894 565-753 (960)
70 KOG0213 Splicing factor 3b, su 47.7 5.6E+02 0.012 30.6 34.1 378 453-892 489-906 (1172)
71 PRK09687 putative lyase; Provi 47.4 3.7E+02 0.0079 28.4 14.7 123 431-595 155-277 (280)
72 KOG4541 Nuclear transport rece 46.8 5E+02 0.011 29.8 24.8 45 789-833 568-612 (748)
73 KOG2021 Nuclear mRNA export fa 43.5 6.6E+02 0.014 30.2 29.6 55 505-560 210-264 (980)
74 KOG1059 Vesicle coat complex A 41.2 6.9E+02 0.015 29.8 33.8 112 82-227 138-250 (877)
75 KOG1020 Sister chromatid cohes 38.6 1.1E+03 0.023 31.2 32.4 94 208-315 828-923 (1692)
76 KOG0166 Karyopherin (importin) 38.5 6.7E+02 0.015 28.9 16.1 233 456-734 127-375 (514)
77 KOG0213 Splicing factor 3b, su 38.4 7.7E+02 0.017 29.6 42.9 175 410-604 726-916 (1172)
78 KOG1943 Beta-tubulin folding c 38.3 2.7E+02 0.0058 34.7 11.2 84 512-601 526-612 (1133)
79 KOG4653 Uncharacterized conser 35.9 9E+02 0.02 29.6 18.0 178 511-726 746-929 (982)
80 PF10363 DUF2435: Protein of u 35.5 2.8E+02 0.006 23.6 8.7 69 531-604 5-76 (92)
81 PF08506 Cse1: Cse1; InterPro 35.1 5.5E+02 0.012 28.4 12.6 126 703-839 228-362 (370)
82 PF01603 B56: Protein phosphat 34.5 7.1E+02 0.015 28.0 18.4 50 797-849 274-323 (409)
83 KOG1062 Vesicle coat complex A 34.5 9.1E+02 0.02 29.3 15.6 176 679-906 138-314 (866)
84 PF10508 Proteasom_PSMB: Prote 34.5 7.9E+02 0.017 28.5 14.6 139 6-158 75-231 (503)
85 PF10274 ParcG: Parkin co-regu 34.4 3.2E+02 0.007 26.6 9.3 55 676-733 73-130 (183)
86 PF00514 Arm: Armadillo/beta-c 33.3 64 0.0014 22.3 3.4 27 530-556 13-41 (41)
87 PF08389 Xpo1: Exportin 1-like 33.1 45 0.00097 31.0 3.5 42 510-551 107-148 (148)
88 PF09184 PPP4R2: PPP4R2; Inte 33.1 3E+02 0.0064 29.2 9.7 106 6-118 2-110 (288)
89 PF05918 API5: Apoptosis inhib 32.4 8.7E+02 0.019 28.4 19.5 209 511-754 78-294 (556)
90 PF13251 DUF4042: Domain of un 32.0 4E+02 0.0086 26.0 9.7 85 541-629 54-156 (182)
91 cd00020 ARM Armadillo/beta-cat 30.8 2.3E+02 0.005 24.6 7.7 90 18-118 17-118 (120)
92 COG5064 SRP1 Karyopherin (impo 29.4 1.4E+02 0.0029 31.8 6.2 93 455-556 172-272 (526)
93 PRK10236 hypothetical protein; 28.5 1.2E+02 0.0025 30.7 5.4 61 7-78 20-86 (237)
94 cd07064 AlkD_like_1 A new stru 28.3 2.5E+02 0.0054 28.1 8.0 62 16-87 20-83 (208)
95 KOG1240 Protein kinase contain 28.1 1.4E+03 0.03 29.4 18.7 60 33-98 75-134 (1431)
96 PF12717 Cnd1: non-SMC mitotic 28.0 5.6E+02 0.012 24.7 13.6 60 789-853 74-140 (178)
97 KOG1020 Sister chromatid cohes 27.6 1.5E+03 0.033 29.8 27.4 52 504-559 871-924 (1692)
98 KOG0915 Uncharacterized conser 25.4 1.7E+03 0.037 29.5 32.3 112 431-557 952-1069(1702)
99 PF08064 UME: UME (NUC010) dom 25.2 3.2E+02 0.007 23.9 7.2 50 680-734 53-103 (107)
100 PTZ00429 beta-adaptin; Provisi 25.1 1.3E+03 0.029 28.2 41.5 126 18-158 78-208 (746)
101 PF11707 Npa1: Ribosome 60S bi 24.5 6.5E+02 0.014 27.2 11.0 101 790-912 68-185 (330)
102 PF09384 UTP15_C: UTP15 C term 24.2 3.3E+02 0.0072 25.5 7.5 43 521-563 70-112 (148)
103 COG5240 SEC21 Vesicle coat com 23.0 1.2E+03 0.027 27.0 14.3 63 7-71 302-365 (898)
104 KOG1078 Vesicle coat complex C 22.4 6.8E+02 0.015 30.2 10.6 124 412-556 404-532 (865)
105 KOG1943 Beta-tubulin folding c 22.4 1.6E+03 0.036 28.3 19.7 55 680-734 417-477 (1133)
106 KOG2011 Sister chromatid cohes 22.4 1.7E+03 0.036 28.3 15.3 231 308-557 94-356 (1048)
107 KOG0567 HEAT repeat-containing 22.0 3.3E+02 0.0072 28.1 7.2 84 456-562 172-256 (289)
108 COG5064 SRP1 Karyopherin (impo 21.9 8.6E+02 0.019 26.1 10.3 137 543-715 131-272 (526)
109 PF10274 ParcG: Parkin co-regu 21.6 7.6E+02 0.017 24.1 12.1 91 522-616 29-126 (183)
110 KOG1993 Nuclear transport rece 21.6 1.5E+03 0.033 27.6 25.3 96 504-603 503-604 (978)
111 cd03568 VHS_STAM VHS domain fa 21.0 6.8E+02 0.015 23.3 9.4 36 527-562 35-72 (144)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-90 Score=757.12 Aligned_cols=861 Identities=18% Similarity=0.260 Sum_probs=672.6
Q ss_pred CCchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCC
Q 002453 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (920)
Q Consensus 1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~ 80 (920)
|+.+.+++|+++|..||++++++.+..+++||++.|+||+||+++++||+.++. .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 676779999999999999989999999999999999999999999999998764 588999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCC----CchhHHHHHHHh
Q 002453 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT 154 (920)
Q Consensus 81 l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~----~~~~~~~L~iL~ 154 (920)
+|+++...|+..++..+.+++.+|+.|.||+|.+++.+.+++. .||+++.+++..++.+... ...+..+|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999985 6999999999999863211 134678999999
Q ss_pred hhhhhcccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCc
Q 002453 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (920)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (920)
.+|+|..+. + ++..+|..++.++......++.++..++....+...+..+-..+..+++|+.+|+++. ..+.
T Consensus 156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 999999654 2 6778899999999999999999998888765422110011146688999999999964 2232
Q ss_pred chhcccchHHHHHHhcCC--CCcHHHHHHHH------------HHH---HhccC--ChhH---HHHhhhhh-hHhhhh-c
Q 002453 235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVL------------VEL---VGRHE--GLPQ---ALLCRVPF-LKELLL-L 290 (920)
Q Consensus 235 ~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l------------~ei---l~~~~--~~~~---~l~~~~~~-l~~~~~-~ 290 (920)
- ....++..++..+.. ....+++-+|+ .+. +...+ .+.. .+++...+ +++.-. .
T Consensus 228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 233455566655551 11122222222 111 11111 0111 22333222 221110 0
Q ss_pred hhhcCCC--HhHHhhHHHHHHHHHHhhhHHHHhC------ChhHHHHHHHHHhhcCCCCCCcch----hhccHHHHHHHH
Q 002453 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEI----ADSTLQFWSTLA 358 (920)
Q Consensus 291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v----~~~~~~FW~~l~ 358 (920)
....+.| +|....++++++..+|++.+.+.++ ++.+.++++.|+.|+++||. |++ +..++.|||+|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 2334555 7788899999999999999988764 22457899999999999994 554 558899999999
Q ss_pred HHhhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH--
Q 002453 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-- 435 (920)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~-- 435 (920)
|++..+..++. + .....|+ |+|.+|++++++|+.+|.++....|..|+++.|+.||++++|+++++|.++|...
T Consensus 385 dei~~~~~e~~--~-~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~ 461 (982)
T KOG2022|consen 385 DEIMQTINETQ--Q-IKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLD 461 (982)
T ss_pred HHHHHhhhccC--C-cchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99976655432 1 2234454 9999999999999999998766679999999999999999999999999999642
Q ss_pred HHHHHHhhhhcCC-CCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 002453 436 FIQKVFFGSWGSA-NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIG 514 (920)
Q Consensus 436 ~l~~~~~~~~~~~-~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig 514 (920)
++...++++..+. +.+.+|.+.|+|+|++.++++.+...++ +.+..++...++.+.... .+.+.. |++.+||
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~--n~ql~~-Tss~~ig 534 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAP--NPQLLS-TSSDLIG 534 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccC--ChhHHH-HHHHHHH
Confidence 4444455543332 3456799999999999999999875554 666666665554322100 011333 5589999
Q ss_pred hhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhCCCChhhHHHHHH
Q 002453 515 SYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVG 593 (920)
Q Consensus 515 ~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~e 593 (920)
.|+.|+..||.+|.+.++.+++++++++....|..+++++|++|+.+|. ++.+.++... +.+........++.+++.
T Consensus 535 s~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~--py~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 535 SLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD--PYADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc--hHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 9999999999999999999999999999888888999999999999995 3777666654 454566778899999999
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCC---
Q 002453 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN--- 670 (920)
Q Consensus 594 ai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~--- 670 (920)
+||++++.+.+++ +++|+.++++|++++++.++....+ +++.. +. .+-.+.+++++|.++..+.+..
T Consensus 613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~-~~~~l~~iS~LftSL~~~~~~~d~d 682 (982)
T KOG2022|consen 613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---LR-IAFQLNTISALFTSLINKKDIIDTD 682 (982)
T ss_pred HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HH-HHHHHHHHHHHHhccCCCCcccccc
Confidence 9999999998666 7899999999999999999776532 22221 11 2334667778888776543211
Q ss_pred CC-------CCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcCc
Q 002453 671 PA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH 742 (920)
Q Consensus 671 ~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~ 742 (920)
.+ ...|++.++++++|+++.++. +|.++.+++|++|..++++++++++.+ .|++|.+..++.+ |... +.
T Consensus 683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~ 759 (982)
T KOG2022|consen 683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL 759 (982)
T ss_pred chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence 00 113788899999999999998 899999999999999999999998887 8999999999987 7644 44
Q ss_pred chHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhH
Q 002453 743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822 (920)
Q Consensus 743 ~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~ 822 (920)
..-+.+..+++..+..++.+.+.+...+..+.+.. +..+.+. .+.++||+.+.++++++.++++.|+.+.++...+-.
T Consensus 760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS 837 (982)
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence 45577888888888777788888877777666665 5556553 479999999999999999999999999986434555
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhccCCcccch
Q 002453 823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV 902 (920)
Q Consensus 823 ~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l 902 (920)
.++.|++..++.+|+.+.|++++||+.|+...++ ++...+++++.+.|+.|+.++|+|+||.+|||.+
T Consensus 838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l 905 (982)
T KOG2022|consen 838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL 905 (982)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence 5666999999999999999999999999887553 3368899999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhc
Q 002453 903 NTSFNLKYAIFFYKKY 918 (920)
Q Consensus 903 ~~~~e~l~~l~~~~~~ 918 (920)
|.++|+|+++ +||+
T Consensus 906 d~~aDIL~al--~~k~ 919 (982)
T KOG2022|consen 906 DALADILLAL--NAKF 919 (982)
T ss_pred HHHHHHHHHH--HHhh
Confidence 9999999988 5654
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-70 Score=574.71 Aligned_cols=549 Identities=25% Similarity=0.402 Sum_probs=480.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhcCCCh
Q 002453 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (920)
Q Consensus 26 ~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~~l~~~~~~~~ 105 (920)
.+|++||++||+|+++|++|.++|+.. .+.+..+|||||+++||+++|++||+....++|+++++|+......+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 469999999999999999999999874 468999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHhhhccCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHHHHhh
Q 002453 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (920)
Q Consensus 106 ~v~~kL~~~La~l~~~~~~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (920)
.+++||+.++|+++++++.|.++|.++++..++. +....++|++|+++|||+.+.+. .....||+++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~---~~~~~~lLeiL~VlPEE~~~~~~---~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNK---HPAVPILLEILKVLPEETRDIRL---TVGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcC---CccHHHHHHHHHhCcHhhcchhh---hhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999873 33478999999999999976532 26778999999999999
Q ss_pred hhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhccc-chHHHHHHhcCCCCcHHHHHHHHH
Q 002453 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQSSFDVAIEVLV 264 (920)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~ 264 (920)
.+.++.++..+++.... +..+...++|+|+.||.+++ .+|.+.+... +++.++|..+.++++.+.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l-----~~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDL-----KSSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 99999999999998643 22467899999999999987 6788887555 999999999999999999999999
Q ss_pred HHHhccC------ChhHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHHhCChhHHHHHHHHHhhcC
Q 002453 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (920)
Q Consensus 265 eil~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (920)
.+++... .+...++..+.-+...+. .+...+|.|...++||+|+++||+|...+..++++++.+++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9988542 244444444333333333 467789999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHH
Q 002453 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (920)
Q Consensus 339 ~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~ 418 (920)
|| |++|.+.+|.|||.+++.++..+++ .....|+|+|.++++.+.++++||++.+ +..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~~------~~~~~frpy~~rLvs~l~~h~qlp~~~~---~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDDD------EALGIFRPYFLRLVSLLKRHVQLPPDQF---DLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhccccH------HHHHHhHHHHHHHHHHHHHHccCCCccc---cCccchhHHHHHHH
Confidence 98 7899999999999999998754443 5678999999999999999999999533 23477899999999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhh
Q 002453 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (920)
Q Consensus 419 ~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (920)
.++|++.|+..++|.+.++.+++..+.+ ++.+|+..||+||.|++++.+++.+++.. +|.+++++.++|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~i-~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENTI-MPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccch-HHHHHHHHhCCccchh---
Confidence 9999999999999999999999988754 45789999999999999999999777643 7888888888887764
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 002453 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (920)
Q Consensus 499 ~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l 578 (920)
+||+++ .++|+|++|+..||+++.+++++++.++...+++.+|+.|+.++|..|+..+. .+++.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 688885 89999999999999999999999999999888999999999999999999884 4899999998888
Q ss_pred HhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 002453 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (920)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~ 622 (920)
.....+.+... +.+|++.+++.+|.++ .+..++.++.|.+..
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k-~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHK-AKIALEELCEPQLRN 557 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhh-hhHHHHHHhhHHHhc
Confidence 77777777777 9999999999999877 578899999887654
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-55 Score=472.74 Aligned_cols=803 Identities=15% Similarity=0.132 Sum_probs=580.3
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhH
Q 002453 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (920)
Q Consensus 7 ~~v~~av~~ly~~-~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~ 85 (920)
++++|||.+...+ .|+..|+||-+|+++++.||.||++|.+++... +.++.+||||.|||..+++..+++.+..+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~----ts~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINE----TSNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhh----cccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 4899999998875 689999999999999999999999999999875 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 002453 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (920)
Q Consensus 86 ~~~Lr~~Ll~~l~~~--~----~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~ 157 (920)
...+|.+++.|+... . .+|.+|+||++..++.+++.++ .|++++.|+...++-++ ...+.+..+.+|-.+-
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999642 2 2578999999999999999876 69999999999997632 2345789999999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcch
Q 002453 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (920)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~ 236 (920)
.|+.|...+++.-...+-+.+++.|++ +++++.+.+-+++...... -++.+...+|+|+++|+. ||+.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhhh
Confidence 999987766633111233356777887 6899999988888754321 134588899999999999 889999
Q ss_pred hcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCCh-hHHHHhhhh-h-hHhhhhchhhcCCCHhHHhhHHHHHHHHHH
Q 002453 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-PQALLCRVP-F-LKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (920)
Q Consensus 237 ~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~-~~~l~~~~~-~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (920)
+++.+++++++++|.-++++.+|++|+.++++++++- .+.-+-+++ + +.-.+..++.+.+|.|....++++++.+|.
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcce
Confidence 9999999999999999999999999999999999862 222111222 1 111111135567889999999999999988
Q ss_pred hhhHHHHh----CC--------hhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhhHH
Q 002453 314 AAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFS 381 (920)
Q Consensus 314 ~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~ 381 (920)
+......+ .+ ......+.+|++...+. +.++..-+++||+.+...+..+. ...+..+.
T Consensus 309 el~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~--------~ls~~qk~ 378 (980)
T KOG2021|consen 309 ELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLK--------ALSSPQKV 378 (980)
T ss_pred eeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcc--------cccchhhc
Confidence 86554432 11 12356788899998884 56788899999998665543221 22334456
Q ss_pred HHHHHHHHHHHhcccCCCCCCC-C-CCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHhhhh---cCCCCCCCchh
Q 002453 382 VFSALLDALLLRAQVDESSFND-D-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSW---GSANVPIPWKE 456 (920)
Q Consensus 382 ~~~~l~~~l~~k~~~p~~~~~~-~-~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~---~~~~~~~~W~~ 456 (920)
++.+++.++++|+.|++.-+.+ + .++|+++.|.++|+++. .+++....++++.++..+-+.+. .+ ..+.+|+.
T Consensus 379 ~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~n-s~e~swqe 456 (980)
T KOG2021|consen 379 PLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMN-SKEESWQE 456 (980)
T ss_pred cHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcchHHH
Confidence 6788999999999997654322 2 23366788999999998 78888888888765555443322 11 13567999
Q ss_pred hhHHHHHHHhhhhccccCCccc---chh------HHHHHHH--HhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh
Q 002453 457 VETKLFALNVVSEVVLQEGQAF---DFS------VIMQLVA--VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (920)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~---~l~------~i~~~l~--~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~ 525 (920)
+|+++|.+..++|+.+.+.-.+ +++ .+..++. .++.|++.. .++.+ |++|.||..||..+++
T Consensus 457 vE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~l----VqLlf---mE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 457 VELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHEL----VQLLF---MELIVRYNKFFSTESQ 529 (980)
T ss_pred HHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchH----HHHHH---HHHHHHHHHHHhcchh
Confidence 9999999999999987421100 111 2333332 357777643 23455 8999999999999999
Q ss_pred chHHHHHHHH--HhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHH-HHHHHHHHHHh----------CCCChhhHHH
Q 002453 526 NARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLE-ILMWIGEALEK----------RHLPLEDEEE 590 (920)
Q Consensus 526 ~L~~vl~~l~--~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~-~l~~~~~~l~~----------~~l~~~~~~~ 590 (920)
+++.++++++ +|++|.. |+.+|++.|.++.+.-++.+. | +.+ ++..+...+.. .....+++..
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-p-fie~iln~iqdlL~~~vtt~N~~s~~lt~fddqly 607 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-P-FIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLY 607 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHcCcCCCcCccccccccccccce
Confidence 9999999998 6888754 999999999999999999886 4 544 55555555511 1235678999
Q ss_pred HHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCC
Q 002453 591 VVGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLP 668 (920)
Q Consensus 591 l~eai~~ii~~--~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~ 668 (920)
++|++|.+|.. .|.++ +..+...+++|++.+..-....+.-.+....|+. +..+...+..+++.-+++....-
T Consensus 608 IfEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~----Ia~c~~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 608 IFETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVV----IAECHHILMAIGTLAKGFHIRLV 682 (980)
T ss_pred eeecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHH----HHHHHHHHHHHHHHhhcccccCc
Confidence 99999999865 56544 7899999999998875554433211111122332 22334444455666666654321
Q ss_pred CCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHH
Q 002453 669 TNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRT 748 (920)
Q Consensus 669 ~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~L~l 748 (920)
+. .+-.+..++.++..++..++. .++..+.++.++...+.|++.++|+.+.|++|.+++.++.+-... ....|+.+
T Consensus 683 -t~-~qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k-Emvdfl~f 758 (980)
T KOG2021|consen 683 -TE-NQVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK-EMVDFLGF 758 (980)
T ss_pred -ch-hcccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-HHHHHHHH
Confidence 11 112355678888898888888 588899999999999999999999999999999999999865433 57789999
Q ss_pred HHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCC------CCCchHHHHHHHHHHHHhhhhHHH-Hhcc-hhh
Q 002453 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD------QEPDLVEAYTNFASTFVRTSRKEV-LAAS-GAL 820 (920)
Q Consensus 749 ~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~------~~pD~~~~~f~l~~~~l~~~p~~~-~~s~-~~~ 820 (920)
+++++++|+. ++.+.+.+|+..+..+. |..+...+.+. +.-++..+|+.|+..++.+--..+ ++.. ...
T Consensus 759 lsQLihkfk~--~~~~ilnqmlppll~rI-fsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~ 835 (980)
T KOG2021|consen 759 LSQLIHKFKT--DCYQILNQMLPPLLNRI-FSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAI 835 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhh
Confidence 9999999996 46677888888777766 55554322222 223456679999999998754444 3321 122
Q ss_pred hHHHHHHHHH-hhccCChhHHHHHHHHHHHHHhhhhh
Q 002453 821 LEVSFQKAAI-CCTAMHRGAALAAMSYLSCFLEECLA 856 (920)
Q Consensus 821 l~~il~~~l~-~l~~~e~~~~~~~~~fl~~li~~~~~ 856 (920)
++.++...+. +-...++-+.++.......+...+++
T Consensus 836 ~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwgg 872 (980)
T KOG2021|consen 836 LPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGG 872 (980)
T ss_pred hhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCC
Confidence 2223332221 22234554455555555555555554
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-51 Score=431.30 Aligned_cols=848 Identities=12% Similarity=0.139 Sum_probs=572.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhH
Q 002453 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (920)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~ 85 (920)
.+-+.+.|..+|. ++...++||++.|.+||..|+||+-++++|+..+ .++.+|.|.+.|..-|.++|.-+|+++
T Consensus 13 iallDkVVttfyq-g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-----~pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQ-GDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-----LPQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-----CcchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 4568899999995 4667899999999999999999999999998754 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhh
Q 002453 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (920)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~ 157 (920)
+.++|+.+++.+..-+++ .+.+.+|+-.+|..++.+.+ .||+||++++..-+. +-+.++..+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 999999999998765532 36899999999999999875 699999999987664 4567888999999999
Q ss_pred hhcccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHH---HHHHHHHcccccccCc
Q 002453 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILR---CLLSWVRAGCFTEISQ 234 (920)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~---c~~sWi~~~~~~~~~~ 234 (920)
||+.++..-. ++..+...+++.|...++.+++++.++|++..+ +++..+.|+ |+..|+++
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~wiPl-------- 226 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLEWIPL-------- 226 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCch--------
Confidence 9999875433 566677778888999999999999999998643 345555544 55555555
Q ss_pred chhcccchHHHHHH-hcCCCCcHHHHHHHHHHHHhccC-----Chh--------HHHH-hhhh-------hhHhhhhchh
Q 002453 235 GSLAAHPLLNFVFN-SLQVQSSFDVAIEVLVELVGRHE-----GLP--------QALL-CRVP-------FLKELLLLPA 292 (920)
Q Consensus 235 ~~~~~~~ll~~~~~-~L~~~~~~~~a~~~l~eil~~~~-----~~~--------~~l~-~~~~-------~l~~~~~~~~ 292 (920)
+.+..+.++.++.+ ++..|+.+.++++|+.|+...++ +.. +.+. ..+. .+.+.|. .
T Consensus 227 ~yIfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~ 304 (1053)
T COG5101 227 DYIFETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--G 304 (1053)
T ss_pred hHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--c
Confidence 45678888988885 44568889999999999998652 111 1111 1110 1112221 1
Q ss_pred hcCCCHhHHhhHHHHHHHHHHhhhHHHHhCC-h-hHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhc-c---c-
Q 002453 293 LTDGDEKVIGGLACLMSEIGQAAPSLIVEAS-P-EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILG-L---D- 365 (920)
Q Consensus 293 ~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~-~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~-~---~- 365 (920)
....|.++.++++.+++++.+.|...+.... . ..+....+|+.++... +.++...++++|..|.-++++ + +
T Consensus 305 ~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~ 382 (1053)
T COG5101 305 MDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPA 382 (1053)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1223456889999999999999998886532 1 2345578888988884 689999999999998766652 1 0
Q ss_pred ----h---------------hhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCC---CCCC----CCCCchHHHHHHH
Q 002453 366 ----A---------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN---DDGM----VDLPDGLVQFRMN 419 (920)
Q Consensus 366 ----~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~---~~~~----~d~~~~f~~~R~~ 419 (920)
. ...+..+-+...|..++++|.-+++.+|.-|++... |+++ .-.+.|-.++++.
T Consensus 383 tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYks 462 (1053)
T COG5101 383 TEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKS 462 (1053)
T ss_pred cccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHH
Confidence 0 001122345678889999999999999999988542 1111 0001122455667
Q ss_pred HHHHHHHHHHhcCc--hHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhh
Q 002453 420 LVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEE 497 (920)
Q Consensus 420 ~~d~l~~~~~il~~--~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~ 497 (920)
+.+++.+...+.-. +.++...+.... .+..|+|+.+...+|++|+|++.+.++.+.-.+-.+.+-+..++...+.
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~--dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrg- 539 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQL--DGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRG- 539 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHh--cCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 77788887765322 233222222211 2467999999999999999999988644321122344434445543322
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCCc---cHHHHH
Q 002453 498 LKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILM 572 (920)
Q Consensus 498 ~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~~~---~~~~l~ 572 (920)
+..+||+++.+|+++|+|.+|++.|+.||.+|+..++..|+. ..++.+||.+|-++.++|+.+.+..+ ..|.+.
T Consensus 540 -KdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~ 618 (1053)
T COG5101 540 -KDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIV 618 (1053)
T ss_pred -CCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHH
Confidence 223578999999999999999999999999999999999994 56999999999999999998775211 256777
Q ss_pred HHHHHHH--hCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhH
Q 002453 573 WIGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSAT 650 (920)
Q Consensus 573 ~~~~~l~--~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 650 (920)
.++..+. .+.+.+.....++||+|.+|+..|........+..+++-....|.++..++.....+.........++..+
T Consensus 619 ~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ 698 (1053)
T COG5101 619 YIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKM 698 (1053)
T ss_pred HHHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHH
Confidence 7887775 46788888999999999999999987656677777777777778887766532211111011111111100
Q ss_pred -HHHHhhhcccccccccCCCCCCCCch-HHHHH--HhHHHHHHH-HHHh-----h---hccchHHHHHHHHHHHHHHHhh
Q 002453 651 -RGLYRMGTVFSHLPVPLPTNPAGDDP-IFALL--RVFWPMLEK-LFRS-----E---HMENGNLSTAACRALSLAIQSS 717 (920)
Q Consensus 651 -~~l~~l~~i~~~l~~~~~~~~~~~~p-~~~~~--~~i~~~l~~-i~~~-----~---~~~~~~v~e~~c~~~~~~~~~~ 717 (920)
..+-.+.++...+-+. ..+. +..++ .-+.-.+.. +... + +.+--.|-..+..++..-+...
T Consensus 699 ktnVa~ctslg~~fyPq------~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska 772 (1053)
T COG5101 699 KTNVAKCTSLGYRFYPQ------TCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKA 772 (1053)
T ss_pred HHHHHHHhhcccccchH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhh
Confidence 0011111121111110 0011 11000 001111111 1100 0 1111011112222222222111
Q ss_pred ---hhhhHhhHHHHHHHHHHhhhhhc---CcchHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCC
Q 002453 718 ---GQHFVTLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQE 791 (920)
Q Consensus 718 ---~~~~~~~l~~l~~~l~~~~~~~~---~~~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~ 791 (920)
..--..+++++++.++-.|.... +.+.+|.+.+.+|...++. ......-.+.+...++ +..+. .+++++
T Consensus 773 ~dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ct-l~mi~--kdf~Ey 847 (1053)
T COG5101 773 RDLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICT-LIMIV--KDFDEY 847 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhh-HHHHH--hhhhhC
Confidence 11123467888888888887543 3677899999999887752 1111111122333444 33443 367899
Q ss_pred CchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHH
Q 002453 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFN 871 (920)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~ 871 (920)
|++...||.|+..+..++...|+.-|.+.+..+.+..++++.+..|+....++..+..++...... ..
T Consensus 848 pEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m-----g~------- 915 (1053)
T COG5101 848 PEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM-----GV------- 915 (1053)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh-----CC-------
Confidence 999999999999999999999998877889999999999999999999999999999998876542 11
Q ss_pred HHHHHHHHhccHHHHHHHHHHhccCCcccchhhhHHHHH
Q 002453 872 AMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKY 910 (920)
Q Consensus 872 ~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l~~~~e~l~ 910 (920)
+-+.++..++--..+.+++.-+...-.+|..+.=+-+|.
T Consensus 916 ~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla 954 (1053)
T COG5101 916 PFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLA 954 (1053)
T ss_pred chHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHH
Confidence 234555555555666666665554455555555444443
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-39 Score=339.88 Aligned_cols=656 Identities=16% Similarity=0.147 Sum_probs=444.7
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHH
Q 002453 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK 98 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~~l~ 98 (920)
+||++.|+.++..|.+|+.-|+.-++...+|...+ +.+..+|-.|...||+.++.+|+..+.+...++|..++..+.
T Consensus 24 Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~---~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg 100 (885)
T KOG2023|consen 24 SPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAK---SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG 100 (885)
T ss_pred CCChHHHHHHHHHHHHHhcccchhceeeEEEeccc---ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc
Confidence 67899999999999999999999999999998766 467889999999999999999999999999999999998876
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHH
Q 002453 99 RFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRS 176 (920)
Q Consensus 99 ~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~ 176 (920)
..++.||+.....++.++-... .||+.++.+...+.+. +.+.++..+.-|+.+.|+..+. ++ . .
T Consensus 101 ---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~~--ld----s---~ 166 (885)
T KOG2023|consen 101 ---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQF--LD----S---D 166 (885)
T ss_pred ---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHHH--Hh----h---h
Confidence 3456888888888888876654 7999999999999863 3356777888888888865421 11 1 1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCCcH
Q 002453 177 QYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSF 256 (920)
Q Consensus 177 ~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~ 256 (920)
...+-+.--.|..++++.+ ++++++..+++|++..|-.. ...+
T Consensus 167 ~~~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----------~qal-------------- 209 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----------TQAL-------------- 209 (885)
T ss_pred cccCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----------cHHH--------------
Confidence 1122234455666766642 34579999999999887642 1111
Q ss_pred HHHHHHHHHHHhccCChhHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHHhCChhHHHHHHHHHhh
Q 002453 257 DVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSC 336 (920)
Q Consensus 257 ~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~ 336 (920)
...+|.+.|.+ +. ...++|+++.+++|+-|+-+.|..+..++.+ ...++++||..
T Consensus 210 ~~~iD~Fle~l---------------------Fa-lanD~~~eVRk~vC~alv~Llevr~dkl~ph---l~~IveyML~~ 264 (885)
T KOG2023|consen 210 YVHIDKFLEIL---------------------FA-LANDEDPEVRKNVCRALVFLLEVRPDKLVPH---LDNIVEYMLQR 264 (885)
T ss_pred HHHHHHHHHHH---------------------HH-HccCCCHHHHHHHHHHHHHHHHhcHHhcccc---hHHHHHHHHHH
Confidence 11222222211 11 2257788999999999999999888887653 45789999999
Q ss_pred cCCCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCC------C-------
Q 002453 337 VAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN------D------- 403 (920)
Q Consensus 337 ~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~------~------- 403 (920)
+..+ |++|+-.+.+||..++|.- -......||+.+++.+++.+|.|.+++.. +
T Consensus 265 tqd~--dE~VALEACEFwla~aeqp------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 265 TQDV--DENVALEACEFWLALAEQP------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccCc--chhHHHHHHHHHHHHhcCc------------CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 9886 7889999999999988752 34568899999999999999999654210 0
Q ss_pred ------------------------CCC--CCCCchHHH--HHHHHHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCCch
Q 002453 404 ------------------------DGM--VDLPDGLVQ--FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWK 455 (920)
Q Consensus 404 ------------------------~~~--~d~~~~f~~--~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~ 455 (920)
++| .||+|.|.+ .|+-.+-.+.-..++.|.+ ++..++--+... -.+..|.
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~-L~~~~W~ 408 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEH-LSSEEWK 408 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHH-cCcchhh
Confidence 000 122223333 2433333333333455543 344333222110 1246799
Q ss_pred hhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhch--hchHHHHHH
Q 002453 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ--TNARPLLLF 533 (920)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p--~~L~~vl~~ 533 (920)
..||+++++|+|||++...-. .++|.+..++..+.+...+ .||..| ||+++||+.|+...+ +|+.++|.-
T Consensus 409 vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKkp------lVRsIT-CWTLsRys~wv~~~~~~~~f~pvL~~ 480 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKKP------LVRSIT-CWTLSRYSKWVVQDSRDEYFKPVLEG 480 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCcc------ceeeee-eeeHhhhhhhHhcCChHhhhHHHHHH
Confidence 999999999999999985443 3478888877666655432 267778 599999999998643 699999999
Q ss_pred HHHhcccC--chHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHHHH
Q 002453 534 LAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNL 611 (920)
Q Consensus 534 l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~ 611 (920)
+++.+-|. +|+.+||.||..+-++...+|+ |+...+|.++...+..+ ..+...-+|.|||.++..+...-.++.|
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kY--Q~KNLlILYDAIgtlAdsvg~~Ln~~~Y 557 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKY--QKKNLLILYDAIGTLADSVGHALNKPAY 557 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHH--hhcceehHHHHHHHHHHHHHHhcCcHHH
Confidence 99988864 4999999999999999888886 43344555555555543 3456778899999999887655446889
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHH
Q 002453 612 LARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKL 691 (920)
Q Consensus 612 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i 691 (920)
++.++.|++++|+.+-+.. +..+ -.++|++++...++... ..-+-+++++++.++...
T Consensus 558 iqiLmPPLi~KW~~lsd~D--------KdLf--------PLLEClSsia~AL~~gF------~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 558 IQILMPPLIEKWELLSDSD--------KDLF--------PLLECLSSIASALGVGF------LPYAQPVYQRCFRILQKT 615 (885)
T ss_pred HHHhccHHHHHHHhcCccc--------chHH--------HHHHHHHHHHHHHhccc------cccCHHHHHHHHHHHHHH
Confidence 9999999999999875543 2222 24666665555554321 001222444444444433
Q ss_pred HHh--hhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHccCCCCCcchhHH-
Q 002453 692 FRS--EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVT- 768 (920)
Q Consensus 692 ~~~--~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~L~l~s~lv~~~~~~~~~~~~~~~- 768 (920)
++. +-.++ | . ...+.+. ..-+-|++.+.++...|+.-+ +.+.+
T Consensus 616 ~q~~~~~~~~-----------------------~---~-----~~~pdkd-fiI~sLDL~SGLaegLg~~ie--~Lva~s 661 (885)
T KOG2023|consen 616 LQLLAKVQQD-----------------------P---T-----VEAPDKD-FIIVSLDLLSGLAEGLGSHIE--PLVAQS 661 (885)
T ss_pred HHHHHhccCC-----------------------c---c-----ccCCCcc-eEEEeHHHHhHHHHHhhhchH--HHhhhc
Confidence 221 00011 0 0 0012221 355668999999998887521 11111
Q ss_pred -HHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHH
Q 002453 769 -TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYL 847 (920)
Q Consensus 769 -l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl 847 (920)
+..-+.+| ..+.-||++++.|.|++.+.+.|+..+.+. +..++......+......++..|+--+
T Consensus 662 nl~~lll~C----------~~D~~peVRQS~FALLGDltk~c~~~v~p~----~~~fl~~lg~Nl~~~~isv~nNA~WAi 727 (885)
T KOG2023|consen 662 NLLDLLLQC----------LQDEVPEVRQSAFALLGDLTKACFEHVIPN----LADFLPILGANLNPENISVCNNAIWAI 727 (885)
T ss_pred cHHHHHHHH----------hccCChHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHhhcCChhhchHHHHHHHHH
Confidence 11111122 235679999999999999999999988864 444444444555555555555555444
Q ss_pred HHH
Q 002453 848 SCF 850 (920)
Q Consensus 848 ~~l 850 (920)
..+
T Consensus 728 Gei 730 (885)
T KOG2023|consen 728 GEI 730 (885)
T ss_pred HHH
Confidence 443
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-32 Score=306.59 Aligned_cols=600 Identities=17% Similarity=0.174 Sum_probs=430.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhH
Q 002453 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (920)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~ 85 (920)
+..+.+.++.|. .||+..|++|++.|+..-+++..-....+++.+. .++++|.+||..+|..+.+.|+.+++|.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~-----~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILATS-----ADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 568999999988 5688899999999997666665666677777663 4679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhcccc
Q 002453 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (920)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~ 163 (920)
++.||.+|+..+.+ +..+.||+|+|.++|.++-... .||+.++.++++..+. ++...+..+.+|+.+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999986 5567899999999999987654 5999999999999874 5677899999999999977531
Q ss_pred cccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchH
Q 002453 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (920)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll 243 (920)
+..+...+..++.+++...+ ..++..+++++.+.+.+. +...+. .
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~---~~~~~~------~ 197 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL---ENNKSE------V 197 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh---ccchHH------H
Confidence 12345677788888877642 238999999999988853 100100 0
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHHhCC
Q 002453 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (920)
Q Consensus 244 ~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~ 323 (920)
+....++|++++..+ ..++++|.|........|.++.++.++.+-.
T Consensus 198 ----------------------------~~~~~llP~~l~vl~----~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-- 243 (1075)
T KOG2171|consen 198 ----------------------------DKFRDLLPSLLNVLQ----EVIQDGDDDAAKSALEALIELLESEPKLLRP-- 243 (1075)
T ss_pred ----------------------------HHHHHHhHHHHHHhH----hhhhccchHHHHHHHHHHHHHHhhchHHHHH--
Confidence 122345677766433 2456777888888899999999998887754
Q ss_pred hhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCCC
Q 002453 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFND 403 (920)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~ 403 (920)
.+..++++.+.+.+...-|..+...+++|-..+.++- +.......++..+|+..++.-| -|.+++ +
T Consensus 244 -~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~m-te~~~D-~ 309 (1075)
T KOG2171|consen 244 -HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMM-TEEEDD-D 309 (1075)
T ss_pred -HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhc-CCcccc-h
Confidence 4557888888888775445678889999988877752 2334455565666766666544 332222 2
Q ss_pred CCC---CCCCchHHHHHHHHHH-HHHHHHHhcCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccc
Q 002453 404 DGM---VDLPDGLVQFRMNLVE-LLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD 479 (920)
Q Consensus 404 ~~~---~d~~~~f~~~R~~~~d-~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~ 479 (920)
+|. +.|+|++.. -+.++. .+.....-+|++.++..+++.+.. ..++.+|....|+|.++++++|++.+.... .
T Consensus 310 ew~~~d~~ded~~~~-~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~ 386 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEET-PYRAAEQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-N 386 (1075)
T ss_pred hhccccccccccccC-cHHHHHHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-H
Confidence 231 122233222 222333 344444458887777776665422 123578999999999999999998743321 2
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHH-----HhchhchHHHHHHHHHhcccCchHHHHHHHHHHH
Q 002453 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWI-----SAFQTNARPLLLFLAAGISEAVSSNACASALRKI 554 (920)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l-----~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~l 554 (920)
++.|++++....++|+++ ||+.+ |+.||+.+.=| +.|++.+++.|-.++..-.+++|+.+|+.|+-.+
T Consensus 387 l~~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf 459 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF 459 (1075)
T ss_pred HHHHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 688888888878888765 78977 59999998744 3567788888888877777888999999999999
Q ss_pred HHHhhcccCCCccHHHHHH-HHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 002453 555 CEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH 633 (920)
Q Consensus 555 c~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~ 633 (920)
.+.|.+.... ++++.|++ ....+. ..-+...++.++.+||+|+.+... ...+|.++++ .-+.+++.++.+.
T Consensus 460 ~E~~~~~~l~-pYLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~M----p~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 460 SEECDKSILE-PYLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVADAAQE--KFIPYFDRLM----PLLKNFLQNADDK 531 (1075)
T ss_pred HHhCcHHHHH-HHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHHH----HHHHHHHhCCCch
Confidence 9999987764 48888888 444433 233678899999999999877543 2456676666 4445555554321
Q ss_pred CCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 002453 634 SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLA 713 (920)
Q Consensus 634 ~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~ 713 (920)
+.+ . |+ ...++|++.+.+.++. +++.+..++++.++.....+.-..|....+.....+.++
T Consensus 532 d~r---~-----Lr--gktmEcisli~~AVGk---------e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warm 592 (1075)
T KOG2171|consen 532 DLR---E-----LR--GKTMECLSLIARAVGK---------EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARM 592 (1075)
T ss_pred hhH---H-----HH--hhHHHHHHHHHHHhhh---------hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHH
Confidence 111 1 11 2347777766655442 345556677777666654322335667788888999999
Q ss_pred HHhhhhhhHhhHHHHHHHHHHh
Q 002453 714 IQSSGQHFVTLLPQVLDCLSTN 735 (920)
Q Consensus 714 ~~~~~~~~~~~l~~l~~~l~~~ 735 (920)
-+.+|++|.|++|.++..+...
T Consensus 593 c~ilg~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 593 CRILGDDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHhchhhHhHHHHHhHHHHHh
Confidence 9999999999999988877764
No 7
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-29 Score=291.79 Aligned_cols=833 Identities=15% Similarity=0.131 Sum_probs=505.6
Q ss_pred HHHHHHHHHHHhhcC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCCh
Q 002453 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (920)
Q Consensus 5 ~~~~v~~av~~ly~~-~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~ 83 (920)
...++..|+...+.+ ++.+.|.+|++.|.+||..+++|..|..+|... +..+++|||.+.|.+.|+++|+.+|.
T Consensus 8 l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-----~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 8 LDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-----TNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred HHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-----CCchhheeeHHHHHHHHHHhcccCCc
Confidence 445666666664444 788899999999999999999999999999875 35799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhh
Q 002453 84 AAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (920)
Q Consensus 84 e~~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~ 155 (920)
+++.++|+.+++.+..... ..+.+++||+..+..++.+.+ .||++++++.+..+. ++..++..+.+++.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~l 159 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILLL 159 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHHH
Confidence 9999999999998875432 246899999999999999986 699999999999886 35567899999999
Q ss_pred hhhhcccccccccCCCHHHHHHH-HHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHH---HHHHHHHHHHcccccc
Q 002453 156 LPEEVIDSQASDCNISSAHRSQY-GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRK---ILRCLLSWVRAGCFTE 231 (920)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~-~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~---~l~c~~sWi~~~~~~~ 231 (920)
|.||+.+.+... ++ .+|..+ ...+...+..+..++..+..+.. .. +... .+.++.+||+++
T Consensus 160 LsEdvf~~ss~~--~~-q~~~~il~~~~~~~f~~i~~l~~~~~~~a~-------~~-~~~atl~tl~~fl~wip~~---- 224 (1041)
T KOG2020|consen 160 LSEEVFDFSSSE--LT-QQKIIILKNLLENEFQQIFTLCSYIKEKAN-------SE-LLSATLETLLRFLEWIPLG---- 224 (1041)
T ss_pred HHHHHhcccchH--HH-hhhHHHHHHHhhHHHHHHHHHHHHHHhhhh-------hH-HHHHHHHHHHHHhhcccHH----
Confidence 999999775432 23 233333 33344466777777777555432 12 4444 455555666654
Q ss_pred cCcchhcccchHHHHH-HhcCCCCcHHHHHHHHHHHHhccCC--------hhHH------HHhhhhhhHhhhhchhhcCC
Q 002453 232 ISQGSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEG--------LPQA------LLCRVPFLKELLLLPALTDG 296 (920)
Q Consensus 232 ~~~~~~~~~~ll~~~~-~~L~~~~~~~~a~~~l~eil~~~~~--------~~~~------l~~~~~~l~~~~~~~~~~~~ 296 (920)
.+..+..+..++ ..+..++....|++|+.++++.... +.+. .++..++..+.+. .....
T Consensus 225 ----~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~ 298 (1041)
T KOG2020|consen 225 ----YIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDE 298 (1041)
T ss_pred ----HHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHh
Confidence 454444455444 5556788899999999999997642 1111 1122222222222 12233
Q ss_pred CH-hHHhhHHHHHHHHHHhhhHHHHhC----ChhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccc----hh
Q 002453 297 DE-KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----AS 367 (920)
Q Consensus 297 d~-d~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~----~~ 367 (920)
|. +..+.++.+++.+++.+..++... +.....+..+++..+-+ +-++...|++.|..+..+++..+ ..
T Consensus 299 dq~~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~---~se~~~~~ld~W~~lv~~l~~~~~~ll~~ 375 (1041)
T KOG2020|consen 299 DQDSFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIE---PSEIFKICLDYWNKLVADLYYNKPPLLQL 375 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccC---chhHHHHHHHHHHHHHHhhhccccccccc
Confidence 44 678999999999999999998762 22223445554444444 35677779999999887654320 00
Q ss_pred h--------hhhhhhhhhhhHHHHHHHHHHHHHhcccCCCCCC--CCCC-----CCCCchHHHHHHHHHHHHHHHHHhcC
Q 002453 368 I--------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN--DDGM-----VDLPDGLVQFRMNLVELLVDICQLLR 432 (920)
Q Consensus 368 ~--------~~~~~~~~~~~~~~~~~l~~~l~~k~~~p~~~~~--~~~~-----~d~~~~f~~~R~~~~d~l~~~~~il~ 432 (920)
. ..+-+-+...|..++.++.-..+.+|.-|+.... +++. .--..+|..+...+.+.+...+.+-+
T Consensus 376 s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~ 455 (1041)
T KOG2020|consen 376 STTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDV 455 (1041)
T ss_pred ccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhh
Confidence 0 0001123677888899999888999998887432 1110 00023455555555566655554322
Q ss_pred ch--HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCc-ccchhHHHHHHHHhccCchhhhhhHHHHHHHHH
Q 002453 433 SA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSL 509 (920)
Q Consensus 433 ~~--~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~-~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~ 509 (920)
.. .++..-+...+ .+..++|..+..-+|+++++++.+.++.. .+-...+..++ .+.+....+ ..+|+....+
T Consensus 456 ~~t~~~~~~kl~~~l--~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l-~l~E~~~~k--dn~avi~~Ni 530 (1041)
T KOG2020|consen 456 VDTEKIMTEKLAIQL--DGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLL-NLCERKRGK--DNKAVIASNI 530 (1041)
T ss_pred hhhhhhhhHhHHHHh--hHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhcC--CchhHHHHHH
Confidence 22 11111111111 12357899999999999999886653221 01011111221 222222111 1235667778
Q ss_pred HHHHHhhhHHHHhchhchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc--CCCc-cHHHHHHHHHHHH--hCC
Q 002453 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI--DEPS-NLEILMWIGEALE--KRH 582 (920)
Q Consensus 510 ~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l--~~~~-~~~~l~~~~~~l~--~~~ 582 (920)
|+++|+|..|+..|+.+|+++...+++.++. ..++.+|+.+|.++...|+.+. ..+. ..+....+...+. ...
T Consensus 531 ~~vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~ 610 (1041)
T KOG2020|consen 531 MYVVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITED 610 (1041)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcC
Confidence 9999999999999999999999999999984 5589999999999999999853 2111 1222222222221 235
Q ss_pred CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCchhhHHHHHhhHHHHHhhhcccc
Q 002453 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFS 661 (920)
Q Consensus 583 l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~l~~i~~ 661 (920)
+....+...++++|.++.+-..+.....+......-.-..|.+++..+... +.-..+.. +.+....+.......+
T Consensus 611 l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~----v~s~~~i~~~~~~~~~ 686 (1041)
T KOG2020|consen 611 LQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLET----VKSLLNILKTNSRALT 686 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHH----HHHHHHHHHhHHHHHH
Confidence 567788999999997776644444355666666555555566655544321 00001111 1122222222233333
Q ss_pred cccccCCCCCCCC-chHHHHHHhHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHH---hh-hh-----h-hHhhHHHH
Q 002453 662 HLPVPLPTNPAGD-DPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQ---SS-GQ-----H-FVTLLPQV 728 (920)
Q Consensus 662 ~l~~~~~~~~~~~-~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~~~---~~-~~-----~-~~~~l~~l 728 (920)
.++.+.....+-. .-...++...-+.+...... ......+.+.....+-+-+.. .+ +. . -..++|++
T Consensus 687 sl~~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1041)
T KOG2020|consen 687 SLGSTFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPL 766 (1041)
T ss_pred hcCcccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHH
Confidence 3333211110000 11122222222222221110 011112222111111111111 11 11 1 12345666
Q ss_pred HHHHHHhhhhhc---CcchHHHHHHHHHHHccCC-CCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHH
Q 002453 729 LDCLSTNFVSFQ---NHECYIRTASVVIEEFGHK-DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST 804 (920)
Q Consensus 729 ~~~l~~~~~~~~---~~~~~L~l~s~lv~~~~~~-~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 804 (920)
+...+-.|.... +.+..+.+-..++..+|+- ....+ ..+.....++ +.++. .+..+.||+...|+.++..
T Consensus 767 ~~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~---~i~~~v~~c~-l~m~~--~d~qe~~e~~~~f~~lle~ 840 (1041)
T KOG2020|consen 767 LDAVLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELP---LINIAVLECT-LEMIN--KDFQEYPEHRLNFLLLLEA 840 (1041)
T ss_pred HHHHHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhcc---HHHHHHHhhh-hhccc--cccccchHHHHHHHHHHHH
Confidence 655554454222 2344566666666666652 11122 1222334443 33333 3678899999999999999
Q ss_pred HHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHH
Q 002453 805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEG 884 (920)
Q Consensus 805 ~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 884 (920)
+...++..+..-+++.+..+.+.+.++..+..|....+++.-++.++...... + ......++.++..
T Consensus 841 l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~-----------~--~~~~~~~~~~~~~ 907 (1041)
T KOG2020|consen 841 LLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEM-----------E--KFANAFYQTYFLS 907 (1041)
T ss_pred HHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-----------h--HHHHHHHHHHHHH
Confidence 99999988887766667778888888888888888888888877777654321 1 2345566777777
Q ss_pred HHHHHHHHhccCC
Q 002453 885 LVSNVVYALLGVS 897 (920)
Q Consensus 885 lv~~ll~~~~g~~ 897 (920)
++...+.-+.+..
T Consensus 908 ~l~~~~~~~~~~~ 920 (1041)
T KOG2020|consen 908 LLQKIIAVLTDTD 920 (1041)
T ss_pred HHHHHHHHHhccc
Confidence 7777776666554
No 8
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-24 Score=241.08 Aligned_cols=574 Identities=15% Similarity=0.131 Sum_probs=364.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCC------
Q 002453 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY------ 80 (920)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~------ 80 (920)
+.+.+++.+-- .+||..|+.|++.|++++|.|+....+.++...+. .+.+||..||..|||+|.+.|..
T Consensus 4 ~~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~----~~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 4 QSLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDG----VPLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 35556665544 45789999999999999999999999999998875 45899999999999999999985
Q ss_pred ---CChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-c-cCCchHHHHHHHhhhccCCCchhHHHHHHHhh
Q 002453 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (920)
Q Consensus 81 ---l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~ 155 (920)
.+++++..+|+.++..+.+ +|..+|.++..++-.+...- + .||+.++.+-..+++. +.......|..|..
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALLCLYQ 153 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHHHHHH
Confidence 4789999999999999985 68999999999997776554 5 6999999999999874 33344556666665
Q ss_pred hhhhcccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcc
Q 002453 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (920)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~ 235 (920)
|.. ..+++ ..++|.-+...+...+|.+++...+.+...+. ....+...++|.+.+-+.+ ++|..
T Consensus 154 L~k------~ye~k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~~ 217 (1010)
T KOG1991|consen 154 LFK------TYEWK-KDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPLE 217 (1010)
T ss_pred HHH------HHhhc-cccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCHH
Confidence 542 12222 33577778888888999999999988876432 3456889999999999998 56665
Q ss_pred hhcccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCC---------------h---hHHHHhhhhhhHhhhhchhhcCCC
Q 002453 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG---------------L---PQALLCRVPFLKELLLLPALTDGD 297 (920)
Q Consensus 236 ~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~---------------~---~~~l~~~~~~l~~~~~~~~~~~~d 297 (920)
. .+++.+..+++.+..++++.-. | .+..+..+..+.++|........+
T Consensus 218 L--------------~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~ 283 (1010)
T KOG1991|consen 218 L--------------SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPE 283 (1010)
T ss_pred h--------------hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchh
Confidence 4 5667777888888888876410 1 122222222222333211111111
Q ss_pred HhHHhhHHHHHHHHHHhhhHHHHhCChhHHHHHHHHHhhcCCCCC-CcchhhccHHHHHHHHHHhhccchhhhhhhhhhh
Q 002453 298 EKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSE-DWEIADSTLQFWSTLASYILGLDASIAKNKKHVE 376 (920)
Q Consensus 298 ~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~-d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~ 376 (920)
.+.++..|.. ++...+.+ .++..+-.... -++ ..+|...++.| +...+. .+..+
T Consensus 284 ---y~~Fa~~f~~---n~~~~ile------~~lk~l~~~~~-~~yls~rvl~~~l~f---l~~~Vs---------~~~tw 338 (1010)
T KOG1991|consen 284 ---YKEFAQMFLK---NFAQGILE------VFLKILEQWRQ-QLYLSDRVLYYLLNF---LEQCVS---------HASTW 338 (1010)
T ss_pred ---hHHHHHHHHH---HHHHHHHH------HHHHHHHHHHh-cccCCHHHHHHHHHH---HHHhcc---------HHHHH
Confidence 1112222211 11111111 11111111111 011 12344555555 333331 23678
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHHH-----------HHHHHHHHHhcCchH------HHHH
Q 002453 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNL-----------VELLVDICQLLRSAT------FIQK 439 (920)
Q Consensus 377 ~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~~-----------~d~l~~~~~il~~~~------~l~~ 439 (920)
...+|++.-++..++..+..+.|+..+.|+ +|..|+.+-..++ .+++-.++.--|.+. ++.+
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~deelwe-~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~ 417 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDEELWE-EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVD 417 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccHHHHh-cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 899999999998887777766665545575 4455554433332 233333333333331 2223
Q ss_pred HHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHH--hccCchhhhhhHHHHHHHHHHHHHHhhh
Q 002453 440 VFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAV--LSASRSEELKGFMHIVYRSLADVIGSYS 517 (920)
Q Consensus 440 ~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~--l~~~~~~~~~~~~~l~~~t~~~~ig~y~ 517 (920)
++.+...++..+.+-++.|+||++++++++.+.+... . -+++..++.. +|.+..+ .|+ +|+++ |+++++|+
T Consensus 418 Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~-~~~mE~flv~hVfP~f~s~--~g~--Lrara-c~vl~~~~ 490 (1010)
T KOG1991|consen 418 ILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-Y-KSQMEYFLVNHVFPEFQSP--YGY--LRARA-CWVLSQFS 490 (1010)
T ss_pred HHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-h-HHHHHHHHHHHhhHhhcCc--hhH--HHHHH-HHHHHHHH
Confidence 3333222223456799999999999999988775332 2 2445555543 4554432 233 78888 59999999
Q ss_pred HHHHhchhchHHHHHHHHHhcc-cCc--hHHHHHHHHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhCCCChhhHHHHHH
Q 002453 518 KWISAFQTNARPLLLFLAAGIS-EAV--SSNACASALRKICEDASAL-IDEPSNLEILMWIGEALEKRHLPLEDEEEVVG 593 (920)
Q Consensus 518 ~~l~~~p~~L~~vl~~l~~~l~-~~~--v~~~Aa~al~~lc~~c~~~-l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~e 593 (920)
+-=.++|..+..++....++|. +++ |+..||.|++.|...|... ....++++.+++-.-.+.+ ..++++...+++
T Consensus 491 ~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n-e~End~Lt~vme 569 (1010)
T KOG1991|consen 491 SIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN-EVENDDLTNVME 569 (1010)
T ss_pred hccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH-hcchhHHHHHHH
Confidence 8666789999999999999999 454 8999999999999999854 1112366665554444433 345666777776
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhccccccc
Q 002453 594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (920)
Q Consensus 594 ai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~ 664 (920)
.+. ...+. | ..++--.|++-+.+...++++...+.+...+. ..+ .+..+++.+.+++.++.
T Consensus 570 ~iV---~~fse-E-lsPfA~eL~q~La~~F~k~l~~~~~~~~~~dd----k~i-aA~GiL~Ti~Til~s~e 630 (1010)
T KOG1991|consen 570 KIV---CKFSE-E-LSPFAVELCQNLAETFLKVLQTSEDEDESDDD----KAI-AASGILRTISTILLSLE 630 (1010)
T ss_pred HHH---HHHHH-h-hchhHHHHHHHHHHHHHHHHhccCCCCccchH----HHH-HHHHHHHHHHHHHHHHh
Confidence 654 33432 3 45555678888888888888752211111111 111 35677777777776655
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-21 Score=209.86 Aligned_cols=596 Identities=14% Similarity=0.119 Sum_probs=367.4
Q ss_pred CCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhh-----------cccCCCChhH
Q 002453 19 DTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~-----------~~w~~l~~e~ 85 (920)
+||+..|+.|+++|.++|.. |..-...-+.|..+. .+...|..|+.+|||-+. .+|..++.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 67999999999999999996 666667777777654 457999999999999885 3599999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-hc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhccc
Q 002453 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (920)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (920)
++++|+.++..|.. ..+...+--+.++|.++.- .| .||+++..+++.....++. ......|+-+-.++|++.
T Consensus 88 reqVK~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID- 162 (859)
T ss_pred HHHHHHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC-
Confidence 99999999999863 2233444455666776643 34 6999999999988764322 344688999999999873
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccch
Q 002453 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (920)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~l 242 (920)
+ +.+.+.+..|+.-+.+.... .+ ++..++..+++|+..-+.+... ++.-+ -..+-+
T Consensus 163 --------p--------evl~~~sN~iLtaIv~gmrk---~e---~s~~vRLaa~~aL~nsLef~~~-nF~~E-~ern~i 218 (859)
T KOG1241|consen 163 --------P--------EVLEQQSNDILTAIVQGMRK---EE---TSAAVRLAALNALYNSLEFTKA-NFNNE-MERNYI 218 (859)
T ss_pred --------H--------HHHHHHHhHHHHHHHhhccc---cC---CchhHHHHHHHHHHHHHHHHHH-hhccH-hhhcee
Confidence 1 13444555555544433322 22 3456899999999887776420 11111 112234
Q ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHH
Q 002453 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (920)
Q Consensus 243 l~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (920)
++++.+.-+.+ ++..+|..|++.|++.+-+ +.+.| +.
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~--------------------------------------~m~~y---M~ 257 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE--------------------------------------FMEPY---ME 257 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHH---HH
Confidence 44444444433 3345666666665543210 00001 00
Q ss_pred hCChhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccc----hhhhhhhh-hhhhhhHHHHHHHHHHHHHhcc
Q 002453 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----ASIAKNKK-HVEDMFFSVFSALLDALLLRAQ 395 (920)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~----~~~~~~~~-~~~~~~~~~~~~l~~~l~~k~~ 395 (920)
..++..-+.-+..+ +++|+-.++|||...+|+=.++. +.....++ ......+.-+.-++++++..+.
T Consensus 258 ------~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 258 ------QALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred ------HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 12222222333332 57899999999998776532211 00000011 1122224445677788888877
Q ss_pred c-CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccC
Q 002453 396 V-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (920)
Q Consensus 396 ~-p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~ 474 (920)
. +++.+.|+| .-. +..+-+++-.....|. .++++++.-+..+ -.+.+|+.+||+.+++|+|-++-.++
T Consensus 330 kqde~~d~DdW--------np~-kAAg~CL~l~A~~~~D-~Iv~~Vl~Fiee~-i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 330 KQDEDDDDDDW--------NPA-KAAGVCLMLFAQCVGD-DIVPHVLPFIEEN-IQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred hCCCCcccccC--------cHH-HHHHHHHHHHHHHhcc-cchhhhHHHHHHh-cCCcchhhhhHHHHHHHhhhcCCchh
Confidence 6 333222233 322 2334345444444554 3445444322211 24578999999999999997763322
Q ss_pred CcccchhHHHHHH---HHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh---chhchHHHHHHHHHhccc-CchHHHH
Q 002453 475 GQAFDFSVIMQLV---AVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNAC 547 (920)
Q Consensus 475 ~~~~~l~~i~~~l---~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~---~p~~L~~vl~~l~~~l~~-~~v~~~A 547 (920)
.- .+.+.+.+ ..+-.+|.. .++.++ -|++|+.++++.. |..++.+.++.++.++++ |++...+
T Consensus 399 ~L---t~iV~qalp~ii~lm~D~sl------~VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~ 468 (859)
T KOG1241|consen 399 KL---TPIVIQALPSIINLMSDPSL------WVKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNV 468 (859)
T ss_pred hh---hHHHhhhhHHHHHHhcCchh------hhcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHH
Confidence 11 13232322 223334432 256555 5999999998764 557899999999999996 8999999
Q ss_pred HHHHHHHHHHhhcccCCC----ccHHHHHHHHHHHHh--CC---CChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 002453 548 ASALRKICEDASALIDEP----SNLEILMWIGEALEK--RH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (920)
Q Consensus 548 a~al~~lc~~c~~~l~~~----~~~~~l~~~~~~l~~--~~---l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p 618 (920)
|.||..|.+.|..-...+ +.-+.+..++..|.. .. -....|...|++++.+|...|.+ ....+..+..-
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~--vy~~v~~~~l~ 546 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD--VYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHH
Confidence 999999999998644322 222444555554432 11 23557889999999999988864 46778888888
Q ss_pred HHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhcc
Q 002453 619 SYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHME 698 (920)
Q Consensus 619 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~ 698 (920)
++.++.+.++.... +-.+ .....-|++.+ -.+|..+.|-+.++ ...+-.+++..+.++++ . .+
T Consensus 547 il~kl~q~i~~~~l--~~~d-r~q~~eLQs~L--c~~Lq~i~rk~~~~----------~~~~~d~iM~lflri~~-s-~~ 609 (859)
T KOG1241|consen 547 ILEKLDQTISSQIL--SLAD-RAQLNELQSLL--CNTLQSIIRKVGSD----------IREVSDQIMGLFLRIFE-S-KR 609 (859)
T ss_pred HHHHHHHHHHHHhc--cHhh-HHHHHHHHHHH--HHHHHHHHHHcccc----------chhHHHHHHHHHHHHHc-C-Cc
Confidence 99999999883211 0111 11111122211 13344555544431 22345677778888876 3 55
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002453 699 NGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (920)
Q Consensus 699 ~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 736 (920)
+.-+-|.+.-.+...+..+|..|..++|.+..++..+.
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 56666777777888888888888888888777777654
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.87 E-value=5.5e-16 Score=163.77 Aligned_cols=624 Identities=12% Similarity=0.081 Sum_probs=343.9
Q ss_pred CCChHHHHHHHHHHHHhhcChHH--HHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhh-----------cccCCCChhH
Q 002453 19 DTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s~~a--w~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~-----------~~w~~l~~e~ 85 (920)
.|||..|..|+..|.++|+.+-. -.+..+.|...+ +..+.|..|+.+||+-+. .+|-.++.|.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 57999999999999999997433 344555555543 467999999999999986 3599999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-hc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhccc
Q 002453 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (920)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~ 162 (920)
++++|...+..+.. ..+..-+--+..++.++-. .+ .||++..+++...+..+. .....-.|.++....|-..
T Consensus 92 k~qvK~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~- 166 (858)
T COG5215 92 KEQVKGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEA- 166 (858)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccC-
Confidence 99999999998874 2223334444455555432 23 699999999998876432 2334455666666665321
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccch
Q 002453 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (920)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~l 242 (920)
+ +.+.+.+..++- .+.+...+++ ++..++..+|+|+-.-+-+... .+--+ -...-+
T Consensus 167 --------P--------e~li~~sN~il~---aiv~ga~k~e---t~~avRLaaL~aL~dsl~fv~~-nf~~E-~erNy~ 222 (858)
T COG5215 167 --------P--------EDLIQMSNVILF---AIVMGALKNE---TTSAVRLAALKALMDSLMFVQG-NFCYE-EERNYF 222 (858)
T ss_pred --------H--------HHHHHHhhHHHH---HHHHhhcccC---chHHHHHHHHHHHHHHHHHHHH-hhcch-hhhchh
Confidence 1 122333333222 1222222222 4557899999999763322100 11111 112223
Q ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHH
Q 002453 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (920)
Q Consensus 243 l~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (920)
++.+.+.-+.+ ++.-+|..|++.|+..+- .+...| +.
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY--------------------------------------~fm~~y---mE 261 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYY--------------------------------------KFMQSY---ME 261 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHH---HH
Confidence 44444433322 333444455544432210 000001 11
Q ss_pred hCChhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccc--hhhhhhhh-hhhhhhHHHHHHHHHHHHHhccc-
Q 002453 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD--ASIAKNKK-HVEDMFFSVFSALLDALLLRAQV- 396 (920)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~l~~k~~~- 396 (920)
..+..+..+.+..| +++|...+++||...+++=.+.+ +...++.+ +.....+.-...+++.++.-+..
T Consensus 262 ------~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 262 ------NALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred ------HHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 13344444566665 67899999999988776432111 00000000 01111122233344455544433
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCc
Q 002453 397 DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQ 476 (920)
Q Consensus 397 p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~ 476 (920)
.+|-..|+|.. . ...+-+++--..+.| ++++..++.-..+ ...+.+|..+|++..++|++-++=.++.-
T Consensus 334 ~ed~~~DdWn~--------s-maA~sCLqlfaq~~g-d~i~~pVl~FvEq-ni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 334 GEDYYGDDWNP--------S-MAASSCLQLFAQLKG-DKIMRPVLGFVEQ-NIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred CCCccccccch--------h-hhHHHHHHHHHHHhh-hHhHHHHHHHHHH-hccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 22222234431 1 112223332223333 4455554433222 12457899999999999999765322111
Q ss_pred ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh--chh-chHHHHHHHHHhccc-CchHHHHHHHHH
Q 002453 477 AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE-AVSSNACASALR 552 (920)
Q Consensus 477 ~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~--~p~-~L~~vl~~l~~~l~~-~~v~~~Aa~al~ 552 (920)
...+++..+.+...-+++. ..+..+|+ |++|+.++++.. +|+ .|...+...+.|+.| |.....++.++.
T Consensus 403 T~~V~qalp~i~n~m~D~~------l~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~ 475 (858)
T COG5215 403 TKIVPQALPGIENEMSDSC------LWVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKE 475 (858)
T ss_pred HhhHHhhhHHHHHhcccce------eehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHH
Confidence 1112333333333333432 12567775 999999999875 564 788899999988875 878888999999
Q ss_pred HHHHHhhcccC-CCc-cHHHHHHHHHHHH----hCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhh
Q 002453 553 KICEDASALID-EPS-NLEILMWIGEALE----KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKL 626 (920)
Q Consensus 553 ~lc~~c~~~l~-~~~-~~~~l~~~~~~l~----~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~ 626 (920)
.+.++-.+... .++ .-+....+...+. ...-+...|...++++|.+|.--|+. ..+.+-.+.+....++.++
T Consensus 476 nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~~~~~~~~kl~~~ 553 (858)
T COG5215 476 NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAGFYDYTSKKLDEC 553 (858)
T ss_pred hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHH
Confidence 98877554221 011 1122222222222 12224667999999999999877753 4677778888888888888
Q ss_pred hccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHH
Q 002453 627 IDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706 (920)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~ 706 (920)
++-....-.-.|.....+... ..+..|.+++|...+++ .+ +-.+++..+.+++++ - +..-+-+-+
T Consensus 554 isv~~q~l~~eD~~~~~elqS---N~~~vl~aiir~~~~~i-------e~---v~D~lm~Lf~r~les-~-~~t~~~~dV 618 (858)
T COG5215 554 ISVLGQILATEDQLLVEELQS---NYIGVLEAIIRTRRRDI-------ED---VEDQLMELFIRILES-T-KPTTAFGDV 618 (858)
T ss_pred HHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHhcCCCc-------cc---HHHHHHHHHHHHHhc-c-CCchhhhHH
Confidence 765321100011111111111 22334455665544322 12 335567777777763 2 233344567
Q ss_pred HHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC--cchHHHHHHHHHHHccCC
Q 002453 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHK 759 (920)
Q Consensus 707 c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~--~~~~L~l~s~lv~~~~~~ 759 (920)
...+.....+++..|..+++.++.++......+++ ..+.+.+..-+....|.+
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence 77778888889988888888888888876543321 112334444444455543
No 11
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-13 Score=150.53 Aligned_cols=624 Identities=12% Similarity=0.046 Sum_probs=331.6
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCC-----ChhHHHHHHHHH
Q 002453 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l-----~~e~~~~Lr~~L 93 (920)
..|+..|+.|+..|.+++|.|+....+.+++..+. .+.++|.-||..+|+||.+.|+.. +.+.+.+.|..+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de----~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDE----GDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhcc----CCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 46888999999999999999999999999998864 357999999999999999999973 445666666666
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHHHhhh-c--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhcccccccccC
Q 002453 94 LVAAKRF-SSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (920)
Q Consensus 94 l~~l~~~-~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~ 169 (920)
++.+... -.+|...|+.+..++..++-.- + -|+ +.+.....++++ +.......|..+. |+.+ ..|++
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl~----elfk--ayRwk 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCLE----ELFK--AYRWK 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHHH----HHHH--HHhhh
Confidence 6655442 2467777777776666654332 2 377 777777777663 2333334444443 3332 22333
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHh
Q 002453 170 ISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNS 249 (920)
Q Consensus 170 l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~ 249 (920)
... +|.-+..-+.+-+|.+.++-..+...++ . ...++...+||.+.+-..+ ++|...
T Consensus 161 ~nd-eq~di~~li~alfpile~~g~nl~s~~n-y----~s~e~l~LILk~fKsvcy~----~LP~~l------------- 217 (970)
T COG5656 161 YND-EQVDILMLITALFPILEKVGGNLESQGN-Y----GSVETLMLILKSFKSVCYY----SLPDFL------------- 217 (970)
T ss_pred ccc-hHhhHHHHHHHhhHHHHHHhhccccCCc-h----hHHHHHHHHHHHHHHHHHh----hCCHHH-------------
Confidence 432 3333333334456666665544433221 1 2346788899999988776 455543
Q ss_pred cCCCCcHHHHHHHHHHHHhccC---------------Ch---hHHHHhhhhhhHhhhhchhhcCCCHhHHhhHHHHHHHH
Q 002453 250 LQVQSSFDVAIEVLVELVGRHE---------------GL---PQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (920)
Q Consensus 250 L~~~~~~~~a~~~l~eil~~~~---------------~~---~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~ 311 (920)
+.++.+-.++.....++++.- .+ .+.-+.++..+.++|...............++..+..+
T Consensus 218 -sa~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~i 296 (970)
T COG5656 218 -SAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMI 296 (970)
T ss_pred -ccchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555554431 01 11111122111122211000000011112222222222
Q ss_pred HHhhhHHHHhCChhHHHHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 002453 312 GQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALL 391 (920)
Q Consensus 312 ~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 391 (920)
.+.+.+.+.. +-.+ ..=.+...+-|--.|.|.-. + .++.++...|++.=++...+
T Consensus 297 l~tffkqie~-------------wgqg----qLWlsd~~LYfi~~Fve~cv--~------~d~tw~l~ePhlq~ii~~vI 351 (970)
T COG5656 297 LATFFKQIEE-------------WGQG----QLWLSDIELYFIDFFVELCV--D------ADQTWRLMEPHLQYIISGVI 351 (970)
T ss_pred HHHHHHHHHH-------------hhcC----CeecchHHHHHHHHHHHHHh--h------hHhhHhhhccHHHHHHHhhh
Confidence 2222221111 1110 11123333333333333221 1 13578899999988888887
Q ss_pred HhcccCCCCCCCCCCCCCCchHHHHHHHHHHH----------HHHHHHhcCchHHHHHHHhh----h---hcCCCCCCCc
Q 002453 392 LRAQVDESSFNDDGMVDLPDGLVQFRMNLVEL----------LVDICQLLRSATFIQKVFFG----S---WGSANVPIPW 454 (920)
Q Consensus 392 ~k~~~p~~~~~~~~~~d~~~~f~~~R~~~~d~----------l~~~~~il~~~~~l~~~~~~----~---~~~~~~~~~W 454 (920)
..+-.+.++..+.|+ +|.++|.+-+.+.-|. +.-.+..=+++..++.++.- + ...+.+-.+-
T Consensus 352 fPllc~see~eElfE-nDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dna 430 (970)
T COG5656 352 FPLLCLSEEEEELFE-NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNA 430 (970)
T ss_pred hhhcCCChhhHHHHh-cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccH
Confidence 777777665444455 4456665444333221 11111112223334443322 2 1112122468
Q ss_pred hhhhHHHHHHHhhhhccccCCcccchhHHHH-HHHH--hccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHH
Q 002453 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (920)
Q Consensus 455 ~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~-~l~~--l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl 531 (920)
++.|+|++.+.++..-+++ +++ +..+++ ++.. +|....+ .+| ++.++ |+++++|+. -...+..+..++
T Consensus 431 rq~egalr~lasi~s~itk-~sp--~an~me~fiv~hv~P~f~s~--ygf--L~Sra-ce~is~~ee-Dfkd~~ill~ay 501 (970)
T COG5656 431 RQAEGALRLLASIKSFITK-MSP--AANVMEYFIVNHVIPAFRSN--YGF--LKSRA-CEFISTIEE-DFKDNGILLEAY 501 (970)
T ss_pred HHHhhHHHHHHHHHHHhcc-Cch--HHHHHHHHHHHHhhHhhcCc--ccc--hHHHH-HHHHHHHHH-hcccchHHHHHH
Confidence 8999999999999885553 332 244444 4432 3444321 233 67777 599999954 334566777888
Q ss_pred HHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHH
Q 002453 532 LFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKN 609 (920)
Q Consensus 532 ~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~ 609 (920)
+...+++.+.. |+-.||.|++-+..+-..+.....+.|..++-.-.+.+ ..+.+....+++++.. ..+. | ..
T Consensus 502 e~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn-~feiD~LS~vMe~fVe---~fse-E-Ls 575 (970)
T COG5656 502 ENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN-TFEIDPLSMVMESFVE---YFSE-E-LS 575 (970)
T ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc-cccchHHHHHHHHHHH---HhHH-h-hc
Confidence 88888888644 89999999999886654333222355555544443332 3345555566665432 2221 1 22
Q ss_pred HHHHHHHHHHHHHHHh----hhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHH
Q 002453 610 NLLARLLSSSYEAIGK----LIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (920)
Q Consensus 610 ~~l~~ll~p~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (920)
+.-..|...+.++.-+ .+.+.++..+-.+ .++ ..+...+..+.+++-+++.. +......-+...
T Consensus 576 pfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD----DKq-maasGiL~T~~smiLSlen~-------p~vLk~le~sly 643 (970)
T COG5656 576 PFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD----DKQ-MAASGILRTIESMILSLENR-------PLVLKYLEVSLY 643 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcccccccc----HHH-HHHHHHHHHHHHHHHhcccc-------hHHHHHHHHHHH
Confidence 2233344444443333 3333321111111 111 13566677776666555531 122223446678
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002453 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (920)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 736 (920)
|++.-++.+ .-.++...+|+++... +-+-..+.|..+++.+.+....
T Consensus 644 pvi~Filkn---~i~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 644 PVISFILKN---EISDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHhh---hHHHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhcc
Confidence 888888753 3345666667666543 2223345577778888777643
No 12
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1e-12 Score=145.57 Aligned_cols=719 Identities=13% Similarity=0.118 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCC----
Q 002453 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (920)
Q Consensus 5 ~~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~---- 80 (920)
..+++-+.+..-. .|||+.|+.|++.|++.+..+.-=-....|+..+ ..+.++|.-||..+|+.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~----~~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANG----QQDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhcc----CcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 4567777776644 5689999999999999998754334455566554 246899999999999999999984
Q ss_pred ---CChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-c-cCCchHHHHHHHhhhccCCCchhHHHHHHHhh
Q 002453 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (920)
Q Consensus 81 ---l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~-~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~ 155 (920)
+.+++++.+|.-++.... +.|..+..+|+.+|+.++-+- | .||+.+++++..++++ +-......|..-
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl---~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~ta-- 150 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLML---SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVTA-- 150 (960)
T ss_pred ccccchhHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHHH--
Confidence 566788999988888766 357889999999999998664 5 6999999999999863 222222222221
Q ss_pred hhhhcccccccccC-CCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCc
Q 002453 156 LPEEVIDSQASDCN-ISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (920)
Q Consensus 156 l~EE~~~~~~~~~~-l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~ 234 (920)
.-++ ++.|.- -+++--.+++..+...+....+++.+..+...... ++ .. .++.|.+.
T Consensus 151 --hsiF--kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~----~~---~l~~lf~v-------- 208 (960)
T KOG1992|consen 151 --HSIF--KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND----AA---ALNILFGV-------- 208 (960)
T ss_pred --HHHH--HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc----hh---HHHHHHHH--------
Confidence 1121 222210 12233334444444445555555554433221100 11 11 34445441
Q ss_pred chhcccchHHHHHHhcCC---CCcHHH----HHHHHHHHHhccCChhHHHHhhhhhhHhhhhchhhcCCCHh------HH
Q 002453 235 GSLAAHPLLNFVFNSLQV---QSSFDV----AIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEK------VI 301 (920)
Q Consensus 235 ~~~~~~~ll~~~~~~L~~---~~~~~~----a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d------~~ 301 (920)
. -++.-+|..|.- |+.||- ++..+...++ +.++.+..++++ .-
T Consensus 209 -l----ll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~-------------------~~~p~le~~~ee~~~l~~lk 264 (960)
T KOG1992|consen 209 -L----LLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLT-------------------YDNPLLESDEEEATVLDKLK 264 (960)
T ss_pred -H----HHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHh-------------------ccCcccccCcccccHHHHHH
Confidence 0 133444544432 333332 2222222111 111222222221 22
Q ss_pred hhHHHHHHHHHHhhhHHHHhCChhH-HHHHHHHHhhcCCCCCCcc-hhhccHHHHHHHHHHhhccchhhhhhhhhhhhhh
Q 002453 302 GGLACLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (920)
Q Consensus 302 ~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~-v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~ 379 (920)
..+|.+|+=+.+.|-.-+-.--+++ .....++...+.+| .|+ ...-++.|.....+ .+.|
T Consensus 265 a~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~--kyD~Lvs~Al~FLt~V~~----------------r~~y 326 (960)
T KOG1992|consen 265 AQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDT--KYDYLVSKALQFLTSVSR----------------RPHY 326 (960)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHh----------------hhhh
Confidence 3566666655555433221111122 34566666666666 344 34566777544322 1233
Q ss_pred HHHH--HHHHHHHHHhcccCCCCCC--CCCCC-C----------CCchHHHHHHHHHHHHHHHHHhcCch--HHHHHHHh
Q 002453 380 FSVF--SALLDALLLRAQVDESSFN--DDGMV-D----------LPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFF 442 (920)
Q Consensus 380 ~~~~--~~l~~~l~~k~~~p~~~~~--~~~~~-d----------~~~~f~~~R~~~~d~l~~~~~il~~~--~~l~~~~~ 442 (920)
..+| .+++..++.+...|.-..- |++-- | |..|-...|+...|+++..+..-... .++..-.+
T Consensus 327 ~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~ 406 (960)
T KOG1992|consen 327 AELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQ 406 (960)
T ss_pred HhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3343 3666777777777743211 11000 1 11222233566667887777543221 13333233
Q ss_pred hhhc--CCCCCCCchhhhHHHHHHHhhhhc-------cccCCcccchhHHHHHHHH--hccCchhhhhhHHHHHHHHHHH
Q 002453 443 GSWG--SANVPIPWKEVETKLFALNVVSEV-------VLQEGQAFDFSVIMQLVAV--LSASRSEELKGFMHIVYRSLAD 511 (920)
Q Consensus 443 ~~~~--~~~~~~~W~~~Ea~L~~l~~iae~-------~~~~~~~~~l~~i~~~l~~--l~~~~~~~~~~~~~l~~~t~~~ 511 (920)
.+.. ..+.+.+|...+.++|.+.+++-. +....+ +..+..++.. +|....+....++-+++.++ .
T Consensus 407 ~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~---lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI-K 482 (960)
T KOG1992|consen 407 RLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE---LVDVVDFFANQILPDLLSPNVNEFPILKADAI-K 482 (960)
T ss_pred HHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccc---cccHHHHHHHHhhHHhccCccccccchhhccc-c
Confidence 3221 124467899999999999998743 221111 1223332221 12111100111122444343 2
Q ss_pred HHHhhhHHHHh--chhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhc---ccCCCccH-----HHHHHHHHHHH
Q 002453 512 VIGSYSKWISA--FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPSNL-----EILMWIGEALE 579 (920)
Q Consensus 512 ~ig~y~~~l~~--~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~---~l~~~~~~-----~~l~~~~~~l~ 579 (920)
|.--|.+ .|+.+...++-+.+.+..+. |-.-||.|+.++-.-|.. .+..+..+ ..+..+...+.
T Consensus 483 ----y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 483 ----YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred ----eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 2222333 36788899999999998644 778889999888666554 23222222 22333333322
Q ss_pred hCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcc
Q 002453 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTV 659 (920)
Q Consensus 580 ~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i 659 (920)
.+ ...+.+.++++|-++++..++. ..++.. +++.++.+++.....+++......| ..+.++.+
T Consensus 559 ~p--~~~EneylmKaImRii~i~~~~--i~p~~~----~~l~~Lteiv~~v~KNPs~P~fnHY---------LFEsi~~l 621 (960)
T KOG1992|consen 559 LP--GKAENEYLMKAIMRIISILQSA--IIPHAP----ELLRQLTEIVEEVSKNPSNPQFNHY---------LFESIGLL 621 (960)
T ss_pred CC--cccccHHHHHHHHHHHHhCHHh--hhhhhh----HHHHHHHHHHHHHhcCCCCchhHHH---------HHHHHHHH
Confidence 21 2256789999999999987643 223333 3444444444433222111111222 24455555
Q ss_pred cccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHHh
Q 002453 660 FSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQVLDCLSTN 735 (920)
Q Consensus 660 ~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~----~~~~~l~~l~~~l~~~ 735 (920)
++..... ....+...-..++|++..++.+ .-.+++-.+.-++.-.+...+. ++.|++|+++.-- .
T Consensus 622 i~~t~~~------~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~--l 690 (960)
T KOG1992|consen 622 IRKTCKA------NPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN--L 690 (960)
T ss_pred HHHHhcc------CchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH--H
Confidence 5543311 1112333457788888888863 2223444444444444444333 4555555554322 2
Q ss_pred hhhhcCcchHHHHHHHHHHHccCCC-CCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHH
Q 002453 736 FVSFQNHECYIRTASVVIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVL 814 (920)
Q Consensus 736 ~~~~~~~~~~L~l~s~lv~~~~~~~-~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~ 814 (920)
+..+.-.+..+.++..++.. |... ....-+..+++- |+.+..+ +-.=+.-|.|+++++...|...+
T Consensus 691 W~r~gNipalvrLl~aflk~-g~~~~~~~~~l~~iLGi------fqkLiaS------ka~Dh~GF~LLn~i~~~~~~~~~ 757 (960)
T KOG1992|consen 691 WKRSGNIPALVRLLQAFLKT-GSQIVEAADKLSGILGI------FQKLIAS------KANDHHGFYLLNTIIESIPPNEL 757 (960)
T ss_pred HhhcCCcHHHHHHHHHHHhc-CchhhcccccchhHHHH------HHHHhcC------cccchhHHHHHHHHHhcCCHhhh
Confidence 44333456666777776643 2211 000112222221 2333221 11124568888888888766554
Q ss_pred hcchhhhHHHHHHHHHhhccCChhH-HHHHHHHHHHHH
Q 002453 815 AASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFL 851 (920)
Q Consensus 815 ~s~~~~l~~il~~~l~~l~~~e~~~-~~~~~~fl~~li 851 (920)
. +.+..++.....-++...++- .+....|+..+.
T Consensus 758 ~---py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 758 A---PYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred h---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 3 356666665555555443333 444444544433
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.65 E-value=1.3e-15 Score=145.87 Aligned_cols=146 Identities=27% Similarity=0.397 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhcccccccccCCCHHHHHHHHHH
Q 002453 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (920)
Q Consensus 104 ~~~v~~kL~~~La~l~~~~~--~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (920)
|++|++|+|.+++.++.+.+ .||++++++++.+++ ++......|++|+.++||+.+..+. .++.+||..+.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~--~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRS--SLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCC--HSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHH
Confidence 68899999999999999984 799999999999887 3556789999999999999863222 2677899999999
Q ss_pred HHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCCCcHHHHHH
Q 002453 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (920)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~ 261 (920)
+....+.|++++.+++....+. ...++...+|+|+.+|+. +++.+.+.++++++.+|+.|.++++++.|++
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999875421 125788999999999999 6788888888899999999999999999999
Q ss_pred HH
Q 002453 262 VL 263 (920)
Q Consensus 262 ~l 263 (920)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 14
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.7e-08 Score=107.13 Aligned_cols=797 Identities=13% Similarity=0.157 Sum_probs=405.8
Q ss_pred chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCC
Q 002453 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (920)
Q Consensus 3 ~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~ 82 (920)
|+..++++..-..||.+.|+..|.+|++-|.+|-.+|+..+-|..||...+. +..+..|+.+|-.-+... ..+|
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klvs~~-t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLVSRK-TPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHcCC-CCCc
Confidence 4577899999999999999999999999999999999999999999988653 588899999997666544 5799
Q ss_pred hhHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhhc--------cCCchHHHHHHHhhhccCCCchhHHHHHHH
Q 002453 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (920)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l~~~~~--------~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL 153 (920)
-+++..||+.+++++..-. .-+++|...||..+|.+-..-+ ...++|.++...++.. +.+.+.+.+.+|
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iL 152 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHH
Confidence 9999999999999998622 1246899999999998876533 1346777777777652 456677899999
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhhhhccCCCCCcc-----hhhhHHHHHHHHHH-HHHc
Q 002453 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQ-----LHDRNRKILRCLLS-WVRA 226 (920)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~c~~s-Wi~~ 226 (920)
..|..|+...... .+..+++++...++. ..-+|+.+-...+....+-++... ...+.+.+++|+.- +|.-
T Consensus 153 sqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 9999999643322 344555555555555 335566655555544321111001 11345566777651 2211
Q ss_pred c--------cccccCcc---hhcccchHHHHHHhcCC--CCcHHHHHHHHHHHHhccC---------ChhHHHHhhhhhh
Q 002453 227 G--------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVPFL 284 (920)
Q Consensus 227 ~--------~~~~~~~~---~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eil~~~~---------~~~~~l~~~~~~l 284 (920)
. |.+.||.+ .+..+..++..|+..+. +++.+.|++|++.+-+-.+ ++.+.++..+..+
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 0 00122221 12345677888887763 5778999999998776433 2344444443322
Q ss_pred HhhhhchhhcCCCHhHHhhHHHHHHHHHHhh-hHHHHh--CChhHHHH-HHHHHhhcCCCCCCc--chhhccHHHHHHHH
Q 002453 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAA-PSLIVE--ASPEALAL-ADALLSCVAFPSEDW--EIADSTLQFWSTLA 358 (920)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~-~~~l~~--~~~~~~~l-l~~ll~~~~~p~~d~--~v~~~~~~FW~~l~ 358 (920)
+.+ .-.-.|.+.+..+||++..+-.+| ..-++. .-++..++ -++-+.-..| ++. .-....+.+|..+.
T Consensus 310 ---l~n-p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~--wefa~nSvyyLlt~WqRmv 383 (1082)
T KOG1410|consen 310 ---LEN-PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQH--WEFAPNSVYYLLTLWQRMV 383 (1082)
T ss_pred ---HhC-CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHh--hhcccchhHHHHHHHHHHH
Confidence 211 112246777888888887764443 111111 11122211 1221111111 111 23346689999877
Q ss_pred HHhhccchhhhhhhhhhhhhhHHHHHHHHHHHH----Hhcc--cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 002453 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALL----LRAQ--VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR 432 (920)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~k~~--~p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~ 432 (920)
..+.-.... .+...+.|.| ++..+.+ ...+ .|++. | +--|+- ..-.+.-|.+-.+|..--
T Consensus 384 aSVPyvk~~----~phlLd~y~P---eIt~afi~SRl~sV~~ivrd~~--d----~PLdd~-~~~~q~le~l~~icRceY 449 (1082)
T KOG1410|consen 384 ASVPYVKNT----EPHLLDTYCP---EITKAFITSRLQSVEIIVRDGL--D----DPLDDT-GAVQQQLEQLATICRCEY 449 (1082)
T ss_pred hcCCcccCC----ChHHHhhhcH---HHHHHHHHHHhhhhheecccCC--C----Ccchhh-HHHHHHHHHhhhhhhhhH
Confidence 654212111 1223333333 2222222 2211 12221 1 111111 111111222222221100
Q ss_pred ch--HHHHHHHh-------hhhcC-CCCCCCchhhhHH----HHHHHhhhhc-cc---cCC-cccc---hhHHHHHHH--
Q 002453 433 SA--TFIQKVFF-------GSWGS-ANVPIPWKEVETK----LFALNVVSEV-VL---QEG-QAFD---FSVIMQLVA-- 488 (920)
Q Consensus 433 ~~--~~l~~~~~-------~~~~~-~~~~~~W~~~Ea~----L~~l~~iae~-~~---~~~-~~~~---l~~i~~~l~-- 488 (920)
.. ..+.+.++ +++.. ...+.+..-.|+- +|.+|++..+ +. .++ +..+ ...+++++.
T Consensus 450 EkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlm 529 (1082)
T KOG1410|consen 450 EKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLM 529 (1082)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhh
Confidence 00 12333332 22211 1122233333432 4566655322 21 111 1000 123444443
Q ss_pred --HhccCchhhhhh-HH----HHHH--------HHHHHHHHhhhHHHH--hchhchHHHHHHHHHhcc----cCchHHHH
Q 002453 489 --VLSASRSEELKG-FM----HIVY--------RSLADVIGSYSKWIS--AFQTNARPLLLFLAAGIS----EAVSSNAC 547 (920)
Q Consensus 489 --~l~~~~~~~~~~-~~----~l~~--------~t~~~~ig~y~~~l~--~~p~~L~~vl~~l~~~l~----~~~v~~~A 547 (920)
.+|.....+... +. ..|. ++ ..+-.+.++-+. .+...|..++..++..+. +..+....
T Consensus 530 dsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rs-SkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~t 608 (1082)
T KOG1410|consen 530 DSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRS-SKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLT 608 (1082)
T ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHH
Confidence 223222211000 00 0010 11 122333333332 234466777777776665 22355555
Q ss_pred HHHHHHHHHHhh--cccCCCccHHHHHHHHHHHH---------hCC-CChhhHHHHHHHHHHHHcc-CCchHHHHHHHHH
Q 002453 548 ASALRKICEDAS--ALIDEPSNLEILMWIGEALE---------KRH-LPLEDEEEVVGAISLILGS-VSNKELKNNLLAR 614 (920)
Q Consensus 548 a~al~~lc~~c~--~~l~~~~~~~~l~~~~~~l~---------~~~-l~~~~~~~l~eai~~ii~~-~p~~~~~~~~l~~ 614 (920)
-.-|..+.-.-. +.+. -++...-+..+-. +.. -+...|...+++++.++-. ..+++ .-+++
T Consensus 609 Lslf~dLs~GY~~~kkL~---kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede---~~fe~ 682 (1082)
T KOG1410|consen 609 LSLFNDLSLGYSAVKKLV---KLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDE---DMFER 682 (1082)
T ss_pred HHHHHHHhhhHHHHHHHh---cchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccH---HHHHH
Confidence 555555543321 1111 1111111111000 001 1345688899999999865 33333 33788
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHH----HhHHHHHHH
Q 002453 615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL----RVFWPMLEK 690 (920)
Q Consensus 615 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~----~~i~~~l~~ 690 (920)
++.|+.+..+.+++..+++-.+. ++. -+.+..|..=+|++... . .......-.+ -..+|++..
T Consensus 683 fm~PLt~~fe~v~~~~~nn~f~e--e~v-------K~~liGL~RDLRGiA~A--~--~tktsy~~LFdWmYP~~mpllq~ 749 (1082)
T KOG1410|consen 683 FMLPLTDAFEGVLQVFQNNCFEE--EQV-------KRILIGLCRDLRGIAFA--S--NTKTSYQMLFDWMYPEYMPLLQR 749 (1082)
T ss_pred HHHHHHHHHHHHHHHhccccccH--HHH-------HHHHHHHHHHhhhhhhh--h--ccchHHHHHHHHhhhhHHHHHHH
Confidence 99999999888777654322211 111 12222222222332211 0 1111122222 445677777
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHhh----hhhh------------HhhHHHHHHHHHH--------hhh-hhcC-cch
Q 002453 691 LFRSEHMENGNLSTAACRALSLAIQSS----GQHF------------VTLLPQVLDCLST--------NFV-SFQN-HEC 744 (920)
Q Consensus 691 i~~~~~~~~~~v~e~~c~~~~~~~~~~----~~~~------------~~~l~~l~~~l~~--------~~~-~~~~-~~~ 744 (920)
..+ +|.++++++.-+.++....+..= .-++ ..++..-=+.+++ .|. +... ..|
T Consensus 750 ~Ve-~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~ 828 (1082)
T KOG1410|consen 750 AVE-KWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVC 828 (1082)
T ss_pred HHH-hcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceeh
Confidence 777 69999988877666665554421 0000 0111100011111 010 0001 122
Q ss_pred HHHHHHHHHHHc---cCCCCCc-chhHHHHHHHhhhHHHHHhhc--cCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcch
Q 002453 745 YIRTASVVIEEF---GHKDEYG-PLFVTTFERFSQAASVRALNS--SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASG 818 (920)
Q Consensus 745 ~L~l~s~lv~~~---~~~~~~~-~~~~~l~~~l~~~~~~~~l~~--~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~ 818 (920)
|.-+-+.+...| |--.=+. ..+.+.+..+ +.++.+ ..++-+++-+.++||+|+..+.+.+-..+.....
T Consensus 829 ~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~f-----vKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~ 903 (1082)
T KOG1410|consen 829 FSILKNALSGNYVNFGVFRLYGDSALDDALQTF-----VKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEP 903 (1082)
T ss_pred HHHHHHHhhcCccccceeeeeCchHHHHHHHHH-----HHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcH
Confidence 333333333322 1100000 1233333322 222222 1355678999999999999999988777776655
Q ss_pred hhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhh
Q 002453 819 ALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLA 856 (920)
Q Consensus 819 ~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~ 856 (920)
+.+..++..+-.+++.-+.-...+++.-+..+++.-..
T Consensus 904 ~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk 941 (1082)
T KOG1410|consen 904 DVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFK 941 (1082)
T ss_pred HHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHH
Confidence 67777887777788888888888888888887776554
No 15
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.57 E-value=2.3e-09 Score=120.69 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCC-----
Q 002453 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL----- 81 (920)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l----- 81 (920)
+.+...+.+.. ++|+..|.+|+..|.++..+++.-....++..+.. .+...|.+|+..|+.-|.++|...
T Consensus 4 ~~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr 78 (1005)
T KOG2274|consen 4 QAIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD----ASLPLRQIALVLLKRYIEKHWSPNFEAFR 78 (1005)
T ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc----cCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 34455555544 57999999999999999998874443344443332 357899999999999999999853
Q ss_pred -----ChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-hc-cCCchHHHHHHHhhhccCCCchhHHHHHHHh
Q 002453 82 -----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (920)
Q Consensus 82 -----~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~-~~-~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~ 154 (920)
+++.+.-+|+.|++.+. ..++.+++-.+.+++.++-. +| .||+.++-+..+++++ +.+.....+++|.
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~--n~n~i~~am~vL~ 153 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSG--NENSIHGAMRVLA 153 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhcc--chhhhhhHHHHHH
Confidence 45678889999988876 46677888888888888744 45 6999999999999862 4556677888887
Q ss_pred hhhhhcc
Q 002453 155 VLPEEVI 161 (920)
Q Consensus 155 ~l~EE~~ 161 (920)
.+..|+.
T Consensus 154 el~~ev~ 160 (1005)
T KOG2274|consen 154 ELSDEVD 160 (1005)
T ss_pred HHHHHHH
Confidence 7776663
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2e-05 Score=88.45 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=99.6
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccC-----CCChhHHHHHHHHH
Q 002453 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQSAAKDALLNAL 93 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~-----~l~~e~~~~Lr~~L 93 (920)
++|+..++-|++.|++..+.|+.......+.-+. +.+.++|..|+..+|+-|.+.|. .+|+|++..||..+
T Consensus 11 s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~----t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~L 86 (978)
T KOG1993|consen 11 SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSK----TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNL 86 (978)
T ss_pred CCCcccchhHHHHHHhhccCCcHHHHHHHHHhcc----ccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHH
Confidence 6788899999999999999999998888887654 34689999999999999999987 58999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH-hhhc-cCCchHHHHHHHhhhcc
Q 002453 94 LVAAKRFSSGPPQLLTQICLALSALI-LRAV-EHGKPIEKLFYSLQNLQ 140 (920)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~~La~l~-~~~~-~W~~~i~~l~~~l~~~~ 140 (920)
+.++. +.+..+..|.++.++.+| +.+| .||+.+++++..+++..
T Consensus 87 l~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~ 132 (978)
T KOG1993|consen 87 LLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSL 132 (978)
T ss_pred HHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhc
Confidence 98876 456778888999999987 4456 79999999999998743
No 17
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.06 E-value=2.8e-08 Score=106.30 Aligned_cols=174 Identities=10% Similarity=0.146 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhhhhhc---CcchHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHH
Q 002453 723 TLLPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (920)
Q Consensus 723 ~~l~~l~~~l~~~~~~~~---~~~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f 799 (920)
.++||+++.++..|..+. +.+.+|++.+.+|...|+. ..+.+..+++.+.++| +.++.+ ++.++||++..||
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~--~~~~v~~I~~~vf~~T-l~MI~~--d~~~yPe~r~~ff 141 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL--IQPQVPQILEAVFECT-LPMINK--DFEEYPEHRVNFF 141 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG--CCCCHHHHHHHHHHHH-HHHHSS--TSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH-HHHHHh--hhhhChHHHHHHH
Confidence 578999999999998653 4677999999999999973 4456677777777887 777764 6889999999999
Q ss_pred HHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHH
Q 002453 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVIS 879 (920)
Q Consensus 800 ~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 879 (920)
.|+..++++|+..++..|++.+..++++.++|+++.+++....+++.+..+++..... ..+..+++.+
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~------------~~~~~~~F~~ 209 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT------------NPEFANQFYQ 209 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------------SHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc------------CHHHHHHHHH
Confidence 9999999999999998877899999999999999999999999999999999987651 1356678889
Q ss_pred hccHHHHHHHHHHhccCCcccchhhhHHHHHHHH
Q 002453 880 HSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIF 913 (920)
Q Consensus 880 ~~G~~lv~~ll~~~~g~~~rs~l~~~~e~l~~l~ 913 (920)
++.-.++..++..+.-..-++..+..+.+|+.|+
T Consensus 210 ~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 210 QYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 9999999999999998888999999999998886
No 18
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.83 E-value=8.4e-09 Score=85.82 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=62.0
Q ss_pred HHHHHHHhhcC-hHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccC--------CCChhHHHHHHHHHHHHHH
Q 002453 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (920)
Q Consensus 28 A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~--------~l~~e~~~~Lr~~Ll~~l~ 98 (920)
|+++|++++++ |++|..+.+++.++. .+.++|+||+++||++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 999999999996643 4689999999999999999999 9999999999999999875
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00023 Score=84.13 Aligned_cols=372 Identities=15% Similarity=0.148 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHHHhcCch---HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHh
Q 002453 414 VQFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (920)
Q Consensus 414 ~~~R~~~~d~l~~~~~il~~~---~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l 490 (920)
...|+.++|++-.+..-..++ ..++-+++.+ .+.+-...|++++.+.++.+.+.+... .++..+..++..-
T Consensus 94 ~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s~~~~~~~~~~-~~~~~l~~lf~q~ 167 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSSLPETFGNTLQ-PHLDDLLRLFSQT 167 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhhhhccccc-hhHHHHHHHHHHh
Confidence 457899999999988755444 2344444433 234456679999999999999875444 2356677776654
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh-------chHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcc
Q 002453 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-------NARPLLLFLAAGISEAV--SSNACASALRKICEDASAL 561 (920)
Q Consensus 491 ~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~-------~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~ 561 (920)
-..+... ||.+++ +.+|.|..++..++. .||.+++.+-..+.+.+ ....+-.+|-.|.+.+.+.
T Consensus 168 ~~d~s~~------vr~~a~-rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 168 MTDPSSP------VRVAAV-RALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred ccCCcch------HHHHHH-HHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 4444322 566564 889999988864432 44555555544444332 4566777788888888887
Q ss_pred cCCCccHHHHHHHHHHH-HhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCC
Q 002453 562 IDEPSNLEILMWIGEAL-EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-----HSL 635 (920)
Q Consensus 562 l~~~~~~~~l~~~~~~l-~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~-----~~~ 635 (920)
+. +++..++++...+ .+..+++..|...+|-|...+...|. +-+....+..+++..+-..+..... +..
T Consensus 241 l~--~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~---~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 241 LR--PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPA---MCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred HH--HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH---HhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 74 2676666665544 46788999999999999999887553 2222333555555555555443211 100
Q ss_pred CCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002453 636 IHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (920)
Q Consensus 636 ~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~ 715 (920)
..+..+....=..+.+.+++++.- +++. . ++-.+++.+.+.+++ .+-.-..++...+..+..
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~---L~g~--------~----v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~E 377 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALH---LGGK--------Q----VLPPLFEALEAMLQS---TEWKERHAALLALSVIAE 377 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhc---CChh--------h----ehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHc
Confidence 111111111112356788888632 2211 1 122233444444432 222334566777777777
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchH
Q 002453 716 SSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLV 795 (920)
Q Consensus 716 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~ 795 (920)
-+++.+.+.+|++++.++..+. +||+-+=|.+...+..+..+ +.+.+..-.. +.. ...+...-+-..+|-+-
T Consensus 378 Gc~~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~naigQ~std--l~p~iqk~~~---e~l-~~aL~~~ld~~~~~rV~ 449 (1075)
T KOG2171|consen 378 GCSDVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTD--LQPEIQKKHH---ERL-PPALIALLDSTQNVRVQ 449 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhh--hcHHHHHHHH---Hhc-cHHHHHHhcccCchHHH
Confidence 7788888899999999988664 48988888888888888764 4444433222 111 11111111112334333
Q ss_pred HHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhh
Q 002453 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC 832 (920)
Q Consensus 796 ~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l 832 (920)
...-.-+-.+...|+...+. +.++.+++.-+..+
T Consensus 450 ahAa~al~nf~E~~~~~~l~---pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILE---PYLDGLMEKKLLLL 483 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHH---HHHHHHHHHHHHHH
Confidence 33333344455667776664 56777776444334
No 20
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=98.52 E-value=0.0021 Score=74.24 Aligned_cols=126 Identities=17% Similarity=0.071 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCC---
Q 002453 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY--- 80 (920)
Q Consensus 4 ~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~--- 80 (920)
+..+.|.++-.+ .++||..++.|++.|++..+.++.-.....+-... ..+.+.|.-|+.-+|+-|.++|.+
T Consensus 2 ~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~----~~~m~lR~~a~i~fkn~I~~~W~~~~~ 75 (947)
T COG5657 2 EDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSA----FNSMSLRWAALIQFKNYIDKHWREENG 75 (947)
T ss_pred CchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhcc----ccchhHHHHHHHHHHhhHHHHhhhhcc
Confidence 444455554333 25688889999999999999987544444444333 346899999999999999999996
Q ss_pred --CChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hhc-cCCchHHHHHHHhhh
Q 002453 81 --LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL-RAV-EHGKPIEKLFYSLQN 138 (920)
Q Consensus 81 --l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~-~~~-~W~~~i~~l~~~l~~ 138 (920)
+.+++...+|..++..+.+ .+..+.-|.+.+++.+|- .+| .||+.++|+++.+++
T Consensus 76 ~~i~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~ 134 (947)
T COG5657 76 NSILPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE 134 (947)
T ss_pred cCCCCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc
Confidence 5556666999999998875 333333377888888873 455 799999999999986
No 21
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.57 E-value=0.0068 Score=66.25 Aligned_cols=204 Identities=12% Similarity=0.164 Sum_probs=105.0
Q ss_pred HHHHHHHhhcCCCCCCcchhhccHHHHHHHHHHhhccchhhhhhhhhhhhhh--HHHHHHHHHH-HHHhcccCCCCCCCC
Q 002453 328 ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLDA-LLLRAQVDESSFNDD 404 (920)
Q Consensus 328 ~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l~e~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-l~~k~~~p~~~~~~~ 404 (920)
.+.++|......+.+ +.+...++.|-..+.+. . .....| +|++.+++.. ++..|.+-+++.. .
T Consensus 141 ~vw~lL~~~~~~~~~-D~lv~~al~FL~~v~~~----~--------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~E-l 206 (370)
T PF08506_consen 141 AVWNLLTKISQQPKY-DILVSKALQFLSSVAES----P--------HHKNLFENKPHLQQIIEKVIFPNLCLREEDEE-L 206 (370)
T ss_dssp HHHHHHTC--SSGGG-HHHHHHHHHHHHHHHTS----H--------HHHTTT-SHHHHHHHHHHTHHHHHS--HHHHH-H
T ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcc----h--------hHHHHhCCHHHHHHHHHHhccCccCCCHHHHH-H
Confidence 456666676655532 24566788884432221 1 111233 7888888874 4556666433211 1
Q ss_pred CC---------CCCCchHHHHHHHHHHHHHHHHHhcCch------HHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhh
Q 002453 405 GM---------VDLPDGLVQFRMNLVELLVDICQLLRSA------TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSE 469 (920)
Q Consensus 405 ~~---------~d~~~~f~~~R~~~~d~l~~~~~il~~~------~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae 469 (920)
|+ +-|..|+..-|+...|+++..+.--+.. .+++.++++..++ .+.+|+..++|++.+++++.
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHHB
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--CcccHHHHHHHHHHHHHHHh
Confidence 11 0123456667788889998887543321 1233333332222 35689999999999999975
Q ss_pred ccccC--C--cccchhHHHHHHHH--hccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCc-
Q 002453 470 VVLQE--G--QAFDFSVIMQLVAV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV- 542 (920)
Q Consensus 470 ~~~~~--~--~~~~l~~i~~~l~~--l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~- 542 (920)
..... + +...+-.+.+++.. +|+.. +.....+-+++++ ++.+..|..-+ .++.+..+++.+.+.|.++.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~a-ik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADA-IKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHH-HHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-H
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHH-HHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCc
Confidence 44210 0 00011234444432 12111 0001112256656 58888776643 45788999999999999877
Q ss_pred -hHHHHHHHH
Q 002453 543 -SSNACASAL 551 (920)
Q Consensus 543 -v~~~Aa~al 551 (920)
|..-||.|+
T Consensus 361 vv~tyAA~~i 370 (370)
T PF08506_consen 361 VVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHH
T ss_pred chhhhhhhhC
Confidence 566666654
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.28 Score=54.26 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCc--hHHHHHHHHHHH----
Q 002453 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKI---- 554 (920)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~l---- 554 (920)
|.+.+++..--+.+... ...++.-+.+|+.+..+.. ....+.+|+.|+=+.+..++ -+.+|..||.++
T Consensus 324 P~lL~LL~~q~ed~~~D-dWn~smaA~sCLqlfaq~~-----gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 324 PELLSLLEKQGEDYYGD-DWNPSMAASSCLQLFAQLK-----GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHhcCCCcccc-ccchhhhHHHHHHHHHHHh-----hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 55666665543333211 2222233444444444322 23467789999999998776 578899999998
Q ss_pred HHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 555 CEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 555 c~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
|++|...++ |+.+|.+..... .+ .......-..++|.+.+.++
T Consensus 398 ~~~~lT~~V-~qalp~i~n~m~---D~--~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 398 CEDCLTKIV-PQALPGIENEMS---DS--CLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred cHHHHHhhH-HhhhHHHHHhcc---cc--eeehhhHHHHHHHHHHHHHH
Confidence 566665554 344444443211 11 11233444555666655443
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.61 Score=52.75 Aligned_cols=265 Identities=14% Similarity=0.121 Sum_probs=131.4
Q ss_pred HHHHHhhhhccccCCc-ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh-chh---chHHHHHHHH
Q 002453 461 LFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQT---NARPLLLFLA 535 (920)
Q Consensus 461 L~~l~~iae~~~~~~~-~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~-~p~---~L~~vl~~l~ 535 (920)
+|-++..+..+..+.. .+-.|.+..++..+....+ + |.-++ | +.++.+.+. .++ ||..+|.-+.
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK-~------VQEAA-c---sAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK-K------VQEAA-C---SAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH-H------HHHHH-H---HHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4555555555543332 1213455556666554432 1 33322 2 333443333 232 6667777776
Q ss_pred Hhccc---CchHHHHHHHHHHHHHHhhcccCCCccH----HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchH--
Q 002453 536 AGISE---AVSSNACASALRKICEDASALIDEPSNL----EILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE-- 606 (920)
Q Consensus 536 ~~l~~---~~v~~~Aa~al~~lc~~c~~~l~~~~~~----~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~-- 606 (920)
.++.. ..+ .--..|+..+++.|+..|..|.++ |.|++-.+.+.+ +.++.--++|++++|.+++...=
T Consensus 524 ~af~kYQ~KNL-lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd---~DKdLfPLLEClSsia~AL~~gF~P 599 (885)
T KOG2023|consen 524 FAFGKYQKKNL-LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD---SDKDLFPLLECLSSIASALGVGFLP 599 (885)
T ss_pred HHHHHHhhcce-ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc---ccchHHHHHHHHHHHHHHHhccccc
Confidence 66652 222 123678999999999988766554 445555544322 34566778888888887753210
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHH
Q 002453 607 LKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (920)
Q Consensus 607 ~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (920)
-.....++.++-+-..++.......++ ....+.. . .+-.++-++.+.++++..+ +|.+ .-+.+.
T Consensus 600 ~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd-f------iI~sLDL~SGLaegLg~~i-------e~Lv-a~snl~ 664 (885)
T KOG2023|consen 600 YAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD-F------IIVSLDLLSGLAEGLGSHI-------EPLV-AQSNLL 664 (885)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc-e------EEEeHHHHhHHHHHhhhch-------HHHh-hhccHH
Confidence 001222233322222222222222111 0111111 1 1223454444455554321 2222 123344
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHccCC
Q 002453 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC---YIRTASVVIEEFGHK 759 (920)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~---~L~l~s~lv~~~~~~ 759 (920)
.++.+.+.. .-++|++.+.-+++...+.+-+++.|.+..++..+...+... ..|. ..|.++-+..++|..
T Consensus 665 ~lll~C~~D---~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 665 DLLLQCLQD---EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHHHhcc---CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhchh
Confidence 555444432 457899888888888888776666666655555554444321 1222 356666666677764
No 24
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.96 Score=56.12 Aligned_cols=175 Identities=12% Similarity=0.121 Sum_probs=100.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc------hHHHHHHHhhhhcC
Q 002453 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------ATFIQKVFFGSWGS 447 (920)
Q Consensus 374 ~~~~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~~~d~l~~~~~il~~------~~~l~~~~~~~~~~ 447 (920)
+..+..+|++.+|++.+++ -+|+|+ ..+.+.+.+++..+=. +.+++.+++.+..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyR-Y~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYR-YQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhh-hccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 4567889999999988874 566554 1345566777754332 24677777776542
Q ss_pred CCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHH--hc--
Q 002453 448 ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS--AF-- 523 (920)
Q Consensus 448 ~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~--~~-- 523 (920)
. .+..|+-+||++.++.-+-.+=+.++-...+|.++..+-..-++=+.. .|.++-+ + +..+++.+-=.. .|
T Consensus 1048 l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs-VR~aa~~--~-~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1048 L-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES-VREAADK--A-ARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred c-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--H-HHHHHHHHhhhcccCCcc
Confidence 2 356799999999999877554221111001333332221211111111 1111111 1 234444332221 23
Q ss_pred --hhchHHHHHHHH-Hhcc-c-CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHH
Q 002453 524 --QTNARPLLLFLA-AGIS-E-AVSSNACASALRKICEDASALIDEPSNLEILMWI 574 (920)
Q Consensus 524 --p~~L~~vl~~l~-~~l~-~-~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~ 574 (920)
.+.+..+|+|++ .|+. + ++++..+-.++.++.+..++.+. | +.+.|+-+
T Consensus 1123 ~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P-~~~~LIp~ 1176 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-P-HFPKLIPL 1176 (1702)
T ss_pred cHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-c-hhhHHHHH
Confidence 368888899988 3443 2 45899999999999999998875 3 65555443
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=3.9 Score=45.72 Aligned_cols=336 Identities=12% Similarity=0.121 Sum_probs=164.2
Q ss_pred CchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhc----cCch--hhhhhHHHHHHHHHHHHHHhhhHHHHhchhc
Q 002453 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS----ASRS--EELKGFMHIVYRSLADVIGSYSKWISAFQTN 526 (920)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~----~~~~--~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~ 526 (920)
-.+..-|+.+-+..+...+..+++ ..+|-+++..+. ..|+ .+.-|...+-+ ++ -.+| ..+-.|
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~---~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA-~~-iaLg------~~~~~Y 81 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNND---YDQIRKVISELAGDYAYSPHANMRKGGLIGLAA-VA-IALG------IKDAGY 81 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCc---HHHHHHHHHHHHHHhccCcccccccchHHHHHH-HH-HHhc------cccHHH
Confidence 366677888888877766554333 355555554321 1111 11011111111 10 1222 123348
Q ss_pred hHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh------------------------
Q 002453 527 ARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK------------------------ 580 (920)
Q Consensus 527 L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~------------------------ 580 (920)
+..+++-++.++++++ ++.-||.++..+++-|+..... +++.+....-.+..
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 9999999999999876 8899999999999999987642 44333332222210
Q ss_pred -----------------CCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhH
Q 002453 581 -----------------RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT 643 (920)
Q Consensus 581 -----------------~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~ 643 (920)
+..++..|..+++=+- ++...|+-+ +-.|+..+++.+++-+.. . .++..
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~-m~~yl~~~ldGLf~~LsD----~-------s~eVr- 225 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLE-MISYLPSLLDGLFNMLSD----S-------SDEVR- 225 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHH-HHhcchHHHHHHHHHhcC----C-------cHHHH-
Confidence 0113334444444433 223344433 345555555444433221 0 11100
Q ss_pred HHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHh
Q 002453 644 QILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVT 723 (920)
Q Consensus 644 ~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~ 723 (920)
..+-.+++.+.+++.++.. +-+ ..++.+++-.-+ ...++++-..+...+.-.+...|.+..+
T Consensus 226 ------~~~~t~l~~fL~eI~s~P~-s~d--------~~~~i~vlv~~l---~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 226 ------TLTDTLLSEFLAEIRSSPS-SMD--------YDDMINVLVPHL---QSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred ------HHHHHHHHHHHHHHhcCcc-ccC--------cccchhhccccc---cCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 0011222333333332110 001 111223332222 1255666677777788888888889999
Q ss_pred hHHHHHHHHHHhhhhhcCcchH-----HH-HHHHHH-HHccCCC-CCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchH
Q 002453 724 LLPQVLDCLSTNFVSFQNHECY-----IR-TASVVI-EEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLV 795 (920)
Q Consensus 724 ~l~~l~~~l~~~~~~~~~~~~~-----L~-l~s~lv-~~~~~~~-~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~ 795 (920)
+++.++..++.+...+.+.+.. +. .+..++ ...+..+ ++.+. ++.+.. .+ ..+.-|..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~i----i~vl~~-----~l-----~~~~~~tr 353 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSI----IEVLTK-----YL-----SDDREETR 353 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHH----HHHHHH-----Hh-----hcchHHHH
Confidence 9998888887765444332221 11 122222 2222211 11122 221111 11 13445677
Q ss_pred HHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 002453 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFL 851 (920)
Q Consensus 796 ~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li 851 (920)
-..++-+..+..+.|..++.- ...+|...+.++.-+.-+.+--++..+..+.
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVH----NDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhh----ccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 778888888888888877753 2334444445555555555555555444443
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=7 Score=46.89 Aligned_cols=186 Identities=10% Similarity=0.046 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC---------------cchHHHHHHHHHHHccCCCCCcchhHH
Q 002453 704 TAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN---------------HECYIRTASVVIEEFGHKDEYGPLFVT 768 (920)
Q Consensus 704 e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---------------~~~~L~l~s~lv~~~~~~~~~~~~~~~ 768 (920)
|.+..++..++-.++.++.|+-+.+++.+.+.|.+.-. ..++|...++++.++.+.++....+..
T Consensus 562 d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45778888888899999999999999988887765311 123566777777777654332222222
Q ss_pred HHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 002453 769 TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (920)
Q Consensus 769 l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~ 848 (920)
.+-.+.+ .+.. .+-.|.-++.++++..+.-..+.+ + +..=.+++....+++-.-.+=.-..+-++.
T Consensus 642 ~~l~vi~-----~iL~----~~i~dfyeE~~ei~~~~t~~~~~I---s--p~mW~ll~li~e~~~~~~~dyf~d~~~~l~ 707 (1010)
T KOG1991|consen 642 IVLPVIG-----FILK----NDITDFYEELLEIVSSLTFLSKEI---S--PIMWGLLELILEVFQDDGIDYFTDMMPALH 707 (1010)
T ss_pred HHHHHHH-----HHHH----HhhHHHHHHHHHHHhhhhhhhccc---C--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 1111111 1111 111355555555554444333322 1 122234444445554333444555566677
Q ss_pred HHHhhhhhhccCCCCCCCCch-HHHHHHHHHH---------hccHHHHHHHHHHhccCCcccchhhhHH
Q 002453 849 CFLEECLASLLGYTTSIPEGS-FNAMAIQVIS---------HSGEGLVSNVVYALLGVSAMSRVNTSFN 907 (920)
Q Consensus 849 ~li~~~~~~~~~~~~~~~~~~-~~~~~~~~l~---------~~G~~lv~~ll~~~~g~~~rs~l~~~~e 907 (920)
++++.++.+. .+.|.+.+ +-...+.++. +++..|+..++.++.| .+.+-++.+.+
T Consensus 708 N~vt~g~~~~---~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq~iplf~~ 772 (1010)
T KOG1991|consen 708 NYVTYGTPSL---LSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQYIPLFLE 772 (1010)
T ss_pred hheeeCchhh---hccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhhHhHHHHH
Confidence 7777766643 11111111 1233444443 3477888888888887 44444444443
No 27
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.24 E-value=2.6 Score=47.35 Aligned_cols=181 Identities=9% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHhhhh---hhHhh-HHHHHHHHHHhhhhhcCcchHHHH
Q 002453 677 IFALLRVFWPMLEKLFRSEHMENGNLS----TAACRALSLAIQSSGQ---HFVTL-LPQVLDCLSTNFVSFQNHECYIRT 748 (920)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~----e~~c~~~~~~~~~~~~---~~~~~-l~~l~~~l~~~~~~~~~~~~~L~l 748 (920)
...+++++..++..+..+ ++++... |.++.++|.....-.. .+.+. +|++ ..+++.-.. ...+..+.+
T Consensus 65 ~~~il~~L~~il~~v~kN--PsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f-~~ILq~dV~-EF~PYvfQI 140 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSKN--PSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF-QEILQQDVQ-EFIPYVFQI 140 (435)
T ss_dssp HHHHHHHHHHHHHHHHTS-----HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH-HHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHH
Confidence 445778888888887753 5666665 5555555543322111 23343 4444 444442111 146667789
Q ss_pred HHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHH
Q 002453 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKA 828 (920)
Q Consensus 749 ~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~ 828 (920)
++.+++...+. ...+...+++..+.... .-+.++-+-...+|+..++++.|..+... +.++.++...
T Consensus 141 la~Lle~~~~~-~~p~~y~~L~~~Ll~p~----------lWe~~gniPalvrLL~a~i~k~~~~i~~~--~~l~~iLgvF 207 (435)
T PF03378_consen 141 LAQLLELRPSS-PLPDAYKQLFPPLLSPA----------LWERRGNIPALVRLLQAYIKKDPSFIVAN--NQLEPILGVF 207 (435)
T ss_dssp HHHHHHHSS---S--TTTGGGHHHHTSGG----------GGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHH
T ss_pred HHHHHHcCCCC-CCcHHHHHHHHHHcCcc----------hhccCCCcCcHHHHHHHHHHhCchhhcch--hhHHHHHHHH
Confidence 99999877621 11122222333322221 23445678899999999999999998654 4566666654
Q ss_pred HHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhcc
Q 002453 829 AICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLG 895 (920)
Q Consensus 829 l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g 895 (920)
-..+...-.+ ..++.++..++..... +.+.++-+++...++..+.+
T Consensus 208 QkLi~sk~~D--~~gF~LL~~iv~~~p~-------------------~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 208 QKLIASKAND--HYGFDLLESIVENLPP-------------------EALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp HHHHT-TTCH--HHHHHHHHHHHHHS-H-------------------HHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHCCCCcc--hHHHHHHHHHHHHCCH-------------------HHHHHHHHHHHHHHHHHHhh
Confidence 4444332222 2356677776665322 22445555666666666653
No 28
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.24 E-value=8.7 Score=43.30 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhh
Q 002453 570 ILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSA 649 (920)
Q Consensus 570 ~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 649 (920)
.+..+...+... +..+.+.++++|-+++....+. ...+...+++-+...+..+..+. ++|.-. .
T Consensus 27 ll~~Lf~~i~~~--~s~ENeylMk~iMRvl~~~~e~--~~p~~~~il~~L~~il~~v~kNP------snP~Fn-H----- 90 (435)
T PF03378_consen 27 LLQNLFALIEKP--GSAENEYLMKCIMRVLSVLQED--ILPIAVEILQHLTAILKEVSKNP------SNPRFN-H----- 90 (435)
T ss_dssp HHHHHHHHHHTT---STC-HHHHHHHHHHHHHSTTT--TGGGHHHHHHHHHHHHHHHHTS---------HHHH-H-----
T ss_pred HHHHHHHHHhcC--CCccchHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCC------CCcchh-h-----
Confidence 344444444322 2267889999999999887653 23445566666666666665553 233211 1
Q ss_pred HHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-----hhhHhh
Q 002453 650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-----QHFVTL 724 (920)
Q Consensus 650 ~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~-----~~~~~~ 724 (920)
-..+.++.++|..... ..+-+...-+.+||.+..++++ .-.|.+..+--++...+.... +....+
T Consensus 91 -ylFEsi~~lir~~~~~------~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L 160 (435)
T PF03378_consen 91 -YLFESIGALIRFVCEA------DPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPLPDAYKQL 160 (435)
T ss_dssp -HHHHHHHHHHHHS-GG------GHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S--TTTGGG
T ss_pred -hHHHHHHHHHHhccCC------ChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 1355666666653321 1111233557899999999974 234667777777777666543 233445
Q ss_pred HHHHHHHHHHhhhhhcCcchHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHH
Q 002453 725 LPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST 804 (920)
Q Consensus 725 l~~l~~~l~~~~~~~~~~~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~ 804 (920)
+|+++.-. .+......+....+++..+..-+..-.-.+.+..+++. |+.+.+. +. .| ...|.++..
T Consensus 161 ~~~Ll~p~--lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgv------FQkLi~s---k~-~D--~~gF~LL~~ 226 (435)
T PF03378_consen 161 FPPLLSPA--LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGV------FQKLIAS---KA-ND--HYGFDLLES 226 (435)
T ss_dssp HHHHTSGG--GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHH------HHHHHT----TT-CH--HHHHHHHHH
T ss_pred HHHHcCcc--hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHH------HHHHHCC---CC-cc--hHHHHHHHH
Confidence 56554322 22222234556667777776655421111233344442 2223221 11 22 557899999
Q ss_pred HHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhH-HHHHHHHHHHHHhh
Q 002453 805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFLEE 853 (920)
Q Consensus 805 ~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~-~~~~~~fl~~li~~ 853 (920)
++.++|...+. +.+..++...+.-++...++- .+....|+.-++..
T Consensus 227 iv~~~p~~~l~---~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 227 IVENLPPEALE---PYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp HHHHS-HHHHG---GGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHH---HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 99999997775 467888887776665443333 45555565544443
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=15 Score=41.99 Aligned_cols=213 Identities=11% Similarity=0.124 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHH---HHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCC
Q 002453 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMN---LVELLVDICQLLRSATFIQKVFFGSWGSANVPIP 453 (920)
Q Consensus 377 ~~~~~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~---~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~ 453 (920)
..+.|++..++..++.+.- |.+ ..-|.. ....+++|...-+...++..++..+.. ..
T Consensus 208 ~~~EPyiv~~lp~il~~~~----------d~~-----~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~k 267 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG----------DKI-----NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AK 267 (569)
T ss_pred CCCCchHHhhHHHHHHHhh----------ccc-----hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hh
Confidence 3456777777777765441 100 223333 334455555544545566666655432 26
Q ss_pred chhhhHHHHHHHhhhhccccCCcccchhHHHHHHH-HhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHH
Q 002453 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLL 532 (920)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~-~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~ 532 (920)
|+...+++..+++++++.+..-+ ..++.+.+.+. .+.+. ++. +|.+. ..++-+|++.+ .||+ +.+.++
T Consensus 268 WrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~e------vr~a~-~~~l~~~~svi-dN~d-I~~~ip 336 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPE------VRKAG-IETLLKFGSVI-DNPD-IQKIIP 336 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHH------HHHHH-HHHHHHHHHhh-ccHH-HHHHHH
Confidence 99999999999999998763211 11344444333 33332 211 45544 47888888864 5666 889999
Q ss_pred HHHHhcccCc-hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhCCCChhhHHHHHHHHHHHHccCCchHHHHH
Q 002453 533 FLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN 610 (920)
Q Consensus 533 ~l~~~l~~~~-v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~ 610 (920)
-++.++.+|. -...+.+++. ..--.+.+.++.+..+.-+.. .+. .-+...+...+.-++....-.+++....+
T Consensus 337 ~Lld~l~dp~~~~~e~~~~L~---~ttFV~~V~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 337 TLLDALADPSCYTPECLDSLG---ATTFVAEVDAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred HHHHHhcCcccchHHHHHhhc---ceeeeeeecchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 9999999997 3344333332 111111122334444444432 221 11333445666677777776766555556
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 002453 611 LLARLLSSSYEAIGKLIDG 629 (920)
Q Consensus 611 ~l~~ll~p~~~~l~~~~~~ 629 (920)
++..|+ ..++..+..
T Consensus 412 fl~~Ll----p~lk~~~~d 426 (569)
T KOG1242|consen 412 FLPSLL----PGLKENLDD 426 (569)
T ss_pred hHHHHh----hHHHHHhcC
Confidence 555554 455555443
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=18 Score=42.36 Aligned_cols=315 Identities=12% Similarity=0.120 Sum_probs=159.1
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh----c
Q 002453 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----N 526 (920)
Q Consensus 451 ~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~----~ 526 (920)
..+|.---|+=-||.-+++.+.+ + .++.++.++..-...|.=+. |-..+ ..+|+--+ ...|. .
T Consensus 337 ~DdWnp~kAAg~CL~l~A~~~~D-~---Iv~~Vl~Fiee~i~~pdwr~------reaav-mAFGSIl~--gp~~~~Lt~i 403 (859)
T KOG1241|consen 337 DDDWNPAKAAGVCLMLFAQCVGD-D---IVPHVLPFIEENIQNPDWRN------REAAV-MAFGSILE--GPEPDKLTPI 403 (859)
T ss_pred cccCcHHHHHHHHHHHHHHHhcc-c---chhhhHHHHHHhcCCcchhh------hhHHH-HHHHhhhc--CCchhhhhHH
Confidence 34699999999999999998853 2 15778888874333332111 22122 23333222 12333 4
Q ss_pred hHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHh-CCCChh---hHHHHHHHHHHHH
Q 002453 527 ARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIG-EALEK-RHLPLE---DEEEVVGAISLIL 599 (920)
Q Consensus 527 L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~-~~l~~-~~l~~~---~~~~l~eai~~ii 599 (920)
.+..++.+++.+.||. +.+.++-+|.++|+.|.....+..++.+.+++. ..+.. +++... ....+.+++-...
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhc
Confidence 4667888888888887 679999999999999886554322344444332 33321 111111 1223333333222
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHH
Q 002453 600 GSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA 679 (920)
Q Consensus 600 ~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~ 679 (920)
..-+. .........+++..|-+..+...-+++..+.+ .-+.|+.+++... +-+.+
T Consensus 484 ~s~~q----t~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A-----------AYeALmElIk~st----------~~vy~ 538 (859)
T KOG1241|consen 484 VSNGQ----TDPATPFYEAIIGSLLKVTDRADGNQSNLRSA-----------AYEALMELIKNST----------DDVYP 538 (859)
T ss_pred cCCCC----CCccchhHHHHHHHHHhhccccccchhhHHHH-----------HHHHHHHHHHcCc----------HHHHH
Confidence 22111 11112333444444444433321111111112 2344555554421 12333
Q ss_pred HHHhHHHHHHH---------HHHhh-hccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC----cchH
Q 002453 680 LLRVFWPMLEK---------LFRSE-HMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN----HECY 745 (920)
Q Consensus 680 ~~~~i~~~l~~---------i~~~~-~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~----~~~~ 745 (920)
..+++.+++.. +++.. -.+-.++=.-+|.++..++|..++++.+.-..+.+.+++.|... + +-..
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~-~s~~v~e~a 617 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK-RSAVVHEEA 617 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC-ccccchHHH
Confidence 33333333332 22100 00112344579999999999999988777778888888877652 2 2234
Q ss_pred HHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHh
Q 002453 746 IRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLA 815 (920)
Q Consensus 746 L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~ 815 (920)
+.-.+.++...|.. |..-+..|..-- ...|. ++.+++ +.-...+|++++.+.--.-+.+
T Consensus 618 ~laV~tl~~~Lg~~------F~kym~~f~pyL-~~gL~---n~~e~q-Vc~~aVglVgdl~raL~~~i~p 676 (859)
T KOG1241|consen 618 FLAVSTLAESLGKG------FAKYMPAFKPYL-LMGLS---NFQEYQ-VCAAAVGLVGDLARALEDDILP 676 (859)
T ss_pred HHHHHHHHHHHhHh------HHHHHHHHHHHH-HHHhh---cchHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 56677777777764 222222221110 11121 123333 5556667777776665555554
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.92 E-value=0.14 Score=33.44 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHhcccCc--hHHHHHHHHHHHHHHh
Q 002453 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (920)
Q Consensus 530 vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c 558 (920)
+++.+++.+.||. |+.+|+.+|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888888865 9999999999999876
No 32
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.92 E-value=26 Score=42.04 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhh
Q 002453 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (920)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 737 (920)
+.+++....+-+. .-..|-+|.|++..|+...+..+|+.....+|.++..+.+...
T Consensus 566 v~~m~~~tl~rL~-a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~ 621 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLK-ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG 621 (1233)
T ss_pred HHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh
Confidence 3444454444444 2457889999999999999999998888888888888777553
No 33
>PRK09687 putative lyase; Provisional
Probab=90.01 E-value=28 Score=36.73 Aligned_cols=207 Identities=15% Similarity=0.100 Sum_probs=113.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHH
Q 002453 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (920)
Q Consensus 9 v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~ 88 (920)
+...+..|. ++|...|..|...|.++. +++++..+..++.++ +..+|.+|+..|.. +.. +......
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~------d~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK------NPIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC------CHHHHHHHHHHHHh-cCC-----CccchHH
Confidence 344444554 668889999999998775 688999999988764 47999999999975 221 1110111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhccC-CchHHHHHHHhhhcc--------------CCCchhHHHHHHH
Q 002453 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (920)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~~W-~~~i~~l~~~l~~~~--------------~~~~~~~~~L~iL 153 (920)
.-..|...+. ......||...+.+|+.+......| +..+..+...+.... +++...+.++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 1122222222 1345678888888887764333334 344444433332210 0112222333333
Q ss_pred hhhhhhcccccccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHccccc
Q 002453 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (920)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~ 230 (920)
+. + ...-|..-...|.. ..+.+...|...+.. .+..++..+...+..+ +
T Consensus 169 ~d---~-----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~---~--- 220 (280)
T PRK09687 169 KD---P-----------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLALR---K--- 220 (280)
T ss_pred cC---C-----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHcc---C---
Confidence 21 0 12334444444443 255666666666643 2345677766666541 1
Q ss_pred ccCcchhcccchHHHHHHhcCCCCcHHHHHHHHHHHH
Q 002453 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELV 267 (920)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil 267 (920)
....++.+++.|.++..+..+++.+-++-
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig 249 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELG 249 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcC
Confidence 22466777777777777666666665543
No 34
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.29 E-value=57 Score=39.20 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=114.6
Q ss_pred chHHHHHHhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHHhhhhhcCcchHHHHHHH
Q 002453 675 DPIFALLRVFWPMLEKLFRSEHMEN--GNLSTAACRALSLAIQSSGQHFVT-LLPQVLDCLSTNFVSFQNHECYIRTASV 751 (920)
Q Consensus 675 ~p~~~~~~~i~~~l~~i~~~~~~~~--~~v~e~~c~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~~L~l~s~ 751 (920)
|++.+....++..|.++.. ++..+ .-++|++|.+++.--.... .+.. ..|..+..++ .|. ..+.+..++.-
T Consensus 522 ~vl~~~~p~ild~L~qlas-~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~-k~s---~DP~V~~~~qd 595 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLAS-KSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFL-KYS---EDPQVASLAQD 595 (1005)
T ss_pred eeccccchHHHHHHHHHcc-cccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHH-Hhc---CCchHHHHHHH
Confidence 5555555555666666554 23211 1235777777664221111 1111 2233333222 232 33333334433
Q ss_pred HHHHccCCC-CCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHH
Q 002453 752 VIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAI 830 (920)
Q Consensus 752 lv~~~~~~~-~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~ 830 (920)
++.+.-+.. .+.+....++.++.+ -++. ++-..++.+..-.+.++..++|+.|..+-+ .+....|.-...
T Consensus 596 ~f~el~q~~~~~g~m~e~~iPslis-----il~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak 666 (1005)
T KOG2274|consen 596 LFEELLQIAANYGPMQERLIPSLIS-----VLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-----HHcC-cccccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHh
Confidence 333322211 122233333333322 2222 222445677777888899999998776433 345555554443
Q ss_pred hh-ccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCc--hHHHHHHHHH----HhccHHHHHHHHHHhccCCcccchh
Q 002453 831 CC-TAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEG--SFNAMAIQVI----SHSGEGLVSNVVYALLGVSAMSRVN 903 (920)
Q Consensus 831 ~l-~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~--~~~~~~~~~l----~~~G~~lv~~ll~~~~g~~~rs~l~ 903 (920)
+. -..+.+....+...+..+++.+.....+..+.|.-. .+-+.+.+++ ...+...|-.++..+..+++|..=+
T Consensus 667 ~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~ 746 (1005)
T KOG2274|consen 667 ITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGP 746 (1005)
T ss_pred heeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhch
Confidence 33 246777899999999999998665432222222111 1224444444 2444556666666666677777777
Q ss_pred hhHHHHHHHH
Q 002453 904 TSFNLKYAIF 913 (920)
Q Consensus 904 ~~~e~l~~l~ 913 (920)
++..+|+|++
T Consensus 747 n~d~IL~Avi 756 (1005)
T KOG2274|consen 747 NLDQILRAVI 756 (1005)
T ss_pred hHHHHHHHHH
Confidence 7777777764
No 35
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.22 E-value=15 Score=39.66 Aligned_cols=169 Identities=9% Similarity=0.155 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhc------CCCCcHH-HHHHHHHHHHhccCC----hhHHHHh
Q 002453 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFD-VAIEVLVELVGRHEG----LPQALLC 279 (920)
Q Consensus 211 ~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L------~~~~~~~-~a~~~l~eil~~~~~----~~~~l~~ 279 (920)
.+++.+|+-+..|+.... +.+. ....+++.+++.+ ..|+.++ ....++..++.+..+ ....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~----~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE----DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-----HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC----CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 367888899999998541 1122 2333444444322 2345554 466777777765432 2233333
Q ss_pred hhhh-hHhhhhchhhcCCCHhHHhhHHHHHHHHHHhhhHHHHhCCh-hHHHHHHHHHhhcCCCCCCcchhhccHHHHHHH
Q 002453 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (920)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~~~~FW~~l 357 (920)
.+.. ..+.+. .-.++-+|...++.+++..+.+.+...+..-|+ .+..+++.++....|+ +.+|++.++..-..+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 3322 111110 001223577888999999999988888877654 5668899999999998 689999999887777
Q ss_pred HHHhhccchhhhhhhhhhhhhhHHHHHHHHHHHHHhc
Q 002453 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRA 394 (920)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 394 (920)
.+.+...+. +.....++.+|..++..++.-+
T Consensus 193 l~~~~~~~~------~~~~~F~~~y~~~il~~if~vl 223 (319)
T PF08767_consen 193 LNNVSKTNP------EFANQFYQQYYLDILQDIFSVL 223 (319)
T ss_dssp HHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 766543111 2345666777777776666554
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.21 E-value=9.5 Score=38.92 Aligned_cols=139 Identities=16% Similarity=0.108 Sum_probs=80.4
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHH----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhhHHHHhch
Q 002453 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (920)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~----~l~-~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p 524 (920)
.+.+|.....++--+..+..+-..... .+.+...+. .+. .....+. .+.. ++|.+++..+.-+..+-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~-~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVSK-TACQLLSDLARQLGSHF 88 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HHH-HHHHHHHHHHHHHGGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHHH-HHHHHHHHHHHHHhHhH
Confidence 356899999999999988654311111 133333332 221 1222121 1334 44699999988887764
Q ss_pred -hchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHcc
Q 002453 525 -TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (920)
Q Consensus 525 -~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (920)
.++..+++.|+..+.++. ++.+|..++..+|+.|... +.. +........ ..-+...|....+.+..++..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~---~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI---LLEILSQGL-KSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH---HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHH
Confidence 367888898998888754 8899999999999988710 111 122222211 223577899999999999999
Q ss_pred CC
Q 002453 602 VS 603 (920)
Q Consensus 602 ~p 603 (920)
.+
T Consensus 162 ~~ 163 (228)
T PF12348_consen 162 WG 163 (228)
T ss_dssp --
T ss_pred cc
Confidence 88
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.82 E-value=3.6 Score=35.44 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=57.8
Q ss_pred hhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh-chhchHHHHHHHH
Q 002453 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLA 535 (920)
Q Consensus 457 ~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~-~p~~L~~vl~~l~ 535 (920)
.-++|.+|.+++-++..... ..++.|++.+.....++..+ ||+.+ |+.+...+..... .-.++..++..++
T Consensus 3 R~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999888764422 22456666555555554433 78877 5999998876643 2236788888888
Q ss_pred HhcccCc--hHHHHHHHHHH
Q 002453 536 AGISEAV--SSNACASALRK 553 (920)
Q Consensus 536 ~~l~~~~--v~~~Aa~al~~ 553 (920)
+.+.||+ |+..| ..+-+
T Consensus 75 kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 75 KLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHcCCchhHHHHH-HHHHH
Confidence 8888865 66555 44443
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.33 E-value=1.5 Score=33.15 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhHHHH-hchhchHHHHHHHHHhcccCc--hHHHHHHHHHHH
Q 002453 504 IVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISEAV--SSNACASALRKI 554 (920)
Q Consensus 504 l~~~t~~~~ig~y~~~l~-~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~l 554 (920)
+|..+ ++.+|+.+.-.. .-..+++.+++.++..+.|++ |+..|+.||.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56666 489997542111 112377889999999998654 999999998754
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.50 E-value=5.6 Score=34.23 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=34.4
Q ss_pred hhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhccc
Q 002453 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (920)
Q Consensus 524 p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l 562 (920)
.++++.+++.++.++.|++ |+..|+.|+..+++.++..+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~ 62 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI 62 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999765 99999999999999998755
No 40
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.60 E-value=42 Score=34.13 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=83.8
Q ss_pred HHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHH-HHHHHHHHH
Q 002453 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYI-RTASVVIEE 755 (920)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~L-~l~s~lv~~ 755 (920)
+...++++.+.+...+.. ....|+-.+|.+++.++..+|..+.|+++.+++.++.....+ ..++ .-+..++..
T Consensus 47 ~~~~l~~~~~~i~~~l~d---~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~---~~~i~~~a~~~L~~ 120 (228)
T PF12348_consen 47 FVECLRQLLDAIIKQLSD---LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS---KKFIREAANNALDA 120 (228)
T ss_dssp HHHHHH---HHHHH-S-H---H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG------HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHHH
Confidence 334444444444333321 345688999999999999999999999888888887754321 1222 222222222
Q ss_pred ccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhh--HHHHhcchhhhHHHHHHHHHhhc
Q 002453 756 FGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR--KEVLAASGALLEVSFQKAAICCT 833 (920)
Q Consensus 756 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p--~~~~~s~~~~l~~il~~~l~~l~ 833 (920)
+-..-.+.+ .++..+... . .-+.+|.+......++..++.+++ ...+.. ...+..+......++.
T Consensus 121 i~~~~~~~~---~~~~~~l~~-----~----~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 121 IIESCSYSP---KILLEILSQ-----G----LKSKNPQVREECAEWLAIILEKWGSDSSVLQK-SAFLKQLVKALVKLLS 187 (228)
T ss_dssp HHTTS-H-----HHHHHHHHH-----H----TT-S-HHHHHHHHHHHHHHHTT-----GGG---HHHHHHHHHHHHHHHT
T ss_pred HHHHCCcHH---HHHHHHHHH-----H----HhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-cchHHHHHHHHHHHCC
Confidence 221100001 111111010 1 124669999999999999999988 333322 1335667777777777
Q ss_pred cCChhHHHHHHHHHHHHHhhhh
Q 002453 834 AMHRGAALAAMSYLSCFLEECL 855 (920)
Q Consensus 834 ~~e~~~~~~~~~fl~~li~~~~ 855 (920)
-.++++-.++-..+..+.+...
T Consensus 188 D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 188 DADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp SS-HHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
Confidence 7777776666666666655543
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.57 E-value=88 Score=36.50 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=80.0
Q ss_pred CCChHHHHHHHHHHHHhhcC-hHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHH
Q 002453 19 DTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAA 97 (920)
Q Consensus 19 ~~d~~~~~~A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~~l 97 (920)
++|...|+-+.-++..+... ++...++..-+..+=. +.++.+|-.|..++-+-. +++....+-..+.+.+
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll 123 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLN--SPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLL 123 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHh
Confidence 56788899999999988774 6645555555443211 335678888888886533 4566666666666665
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhcc-CCc-hHHHHHHHhhhccCCCchhHHHHHHHhhh
Q 002453 98 KRFSSGPPQLLTQICLALSALILRAVE-HGK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVL 156 (920)
Q Consensus 98 ~~~~~~~~~v~~kL~~~La~l~~~~~~-W~~-~i~~l~~~l~~~~~~~~~~~~~L~iL~~l 156 (920)
. ..++.||++-+.++..++...++ =+. +++.+...+... ++......+.++..+
T Consensus 124 ~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 124 S---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI 179 (526)
T ss_dssp H---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH
T ss_pred c---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH
Confidence 5 35679999999999999877552 122 577777777542 333334455555544
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=83.25 E-value=1.5 Score=33.17 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=35.0
Q ss_pred chhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 002453 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (920)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~ 515 (920)
|.-.++++++|+.+++...+.... .++.++..+..+..++.+. ||..+ ++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~------VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDS------VRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHH------HHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHH------HHHHH-HHHHhc
Confidence 778899999999988766533221 2455665555545555432 67766 588886
No 43
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=82.58 E-value=1.3e+02 Score=36.75 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=44.5
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh
Q 002453 58 TDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122 (920)
Q Consensus 58 ~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~ 122 (920)
.|-..||.|..=|-+.++++--.|..+.-.-+-.-+++.+.- .+.-|.+--.-+++-++-+.
T Consensus 17 sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKv 78 (1233)
T KOG1824|consen 17 SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKV 78 (1233)
T ss_pred CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhc
Confidence 356899999999999999997778777776677777776652 34456665555666666443
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.08 E-value=82 Score=35.91 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHHhcc---cCchHHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 530 LLLFLAAGIS---EAVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 530 vl~~l~~~l~---~~~v~~~Aa~al~~lc~~c~~---~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
+++-++.++. +|.++-.||.|+.+++..-.. ..+.....|.|..+... -..+.++..+=|+|.|+.--|
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-----~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-----PSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-----CcHHHHHHHHHHHhccccCCh
Confidence 3444444443 377899999999999974432 22222356776666432 246678999999999988766
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHh
Q 002453 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (920)
Q Consensus 604 ~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~ 683 (920)
.-.. .-.-...+.|++..+.. . ++ ..-+..+... |+.+.|+-+ ++|-....+.
T Consensus 185 ~~Rd-~vl~~g~l~pLl~~l~~----~-------~~---~~~lRn~tW~---LsNlcrgk~---------P~P~~~~v~~ 237 (514)
T KOG0166|consen 185 DCRD-YVLSCGALDPLLRLLNK----S-------DK---LSMLRNATWT---LSNLCRGKN---------PSPPFDVVAP 237 (514)
T ss_pred HHHH-HHHhhcchHHHHHHhcc----c-------cc---hHHHHHHHHH---HHHHHcCCC---------CCCcHHHHHH
Confidence 5321 12122345555543321 1 11 0111112222 233344422 2456668888
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002453 684 FWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (920)
Q Consensus 684 i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~ 715 (920)
++|+|..++. ..|++|..-+|-.+.....
T Consensus 238 iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 238 ILPALLRLLH---STDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHHhc
Confidence 9999988874 4789998888888876654
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.46 E-value=2.3 Score=37.90 Aligned_cols=94 Identities=15% Similarity=0.025 Sum_probs=55.3
Q ss_pred CCchhhhHHHHHHHhhhhccccCCcc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhch
Q 002453 452 IPWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA 527 (920)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~----~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L 527 (920)
.+|...+.++++++.++...++.... ..++.+.+++ . ++..+ ++..+ ++++++.+......++.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l---~-~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL---K-SEDEE------VVKAA-LWALRNLAAGPEDNKLIV 87 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH---h-CCCHH------HHHHH-HHHHHHHccCcHHHHHHH
Confidence 34899999999999998763211100 0123333333 2 22211 45545 488888876443322322
Q ss_pred H--HHHHHHHHhcccC--chHHHHHHHHHHHHH
Q 002453 528 R--PLLLFLAAGISEA--VSSNACASALRKICE 556 (920)
Q Consensus 528 ~--~vl~~l~~~l~~~--~v~~~Aa~al~~lc~ 556 (920)
. .+++.+.+.+.++ +++..|+.+|..+|+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 1 2566777766654 489999999998874
No 46
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=80.04 E-value=1.2e+02 Score=35.06 Aligned_cols=227 Identities=11% Similarity=0.073 Sum_probs=119.8
Q ss_pred HHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCc--chHHHHHHHHHHHcc
Q 002453 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFG 757 (920)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~--~~~L~l~s~lv~~~~ 757 (920)
-+.++.....++++ +..++.++++...-+-+.+....-.. -+...+++.+.+.|... |. ...|.++.-+++ .|
T Consensus 189 EF~qIF~lc~qiLE--~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~~-L~ 263 (1053)
T COG5101 189 EFPQIFGLCKQILE--YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSM-PDTRVATLSCLTEIVD-LG 263 (1053)
T ss_pred hHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHh-hc
Confidence 45677788888885 67899999988877776655442221 14466888888888754 33 233555555443 45
Q ss_pred CCCCCcchhHHHHHHHhhhHHHHHhhc----c-------CCC-CCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHH--
Q 002453 758 HKDEYGPLFVTTFERFSQAASVRALNS----S-------YIC-DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV-- 823 (920)
Q Consensus 758 ~~~~~~~~~~~l~~~l~~~~~~~~l~~----~-------~~~-~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~-- 823 (920)
+.+.........+..+.+++-+..+.+ . ++. .++-+-++.+-.|+..+...+-+.+- +++ ..+.
T Consensus 264 ~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE-~~e-~~e~ll 341 (1053)
T COG5101 264 RHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLE-ARE-MAENLL 341 (1053)
T ss_pred cCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhc-Chh-HHHHHH
Confidence 444332222222222223221111100 0 111 23345566666666666666544433 222 2222
Q ss_pred -HHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhc-cCCCC--CC-------CC----chHHHHHHHHHHhccHHHHHH
Q 002453 824 -SFQKAAICCTAMHRGAALAAMSYLSCFLEECLASL-LGYTT--SI-------PE----GSFNAMAIQVISHSGEGLVSN 888 (920)
Q Consensus 824 -il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~-~~~~~--~~-------~~----~~~~~~~~~~l~~~G~~lv~~ 888 (920)
..++.+.--+.++++..+.++..|..++-.-.+.. ..|.. +| +. .+-+..-..+=.+.-..++++
T Consensus 342 nah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsq 421 (1053)
T COG5101 342 NAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQ 421 (1053)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHH
Confidence 22333434458999999999999999987654421 00000 00 00 000000011112334467777
Q ss_pred HHHHhccCCcccc-----hhhhHHHHHHHH
Q 002453 889 VVYALLGVSAMSR-----VNTSFNLKYAIF 913 (920)
Q Consensus 889 ll~~~~g~~~rs~-----l~~~~e~l~~l~ 913 (920)
+..-+..+.+|.+ .+..+|+.|..+
T Consensus 422 LrlvlienMvrPEEVliVendegEivRefv 451 (1053)
T COG5101 422 LRLVLIENMVRPEEVLIVENDEGEIVREFV 451 (1053)
T ss_pred HHHHHHHcCCCcceEEEEECCCcHHHHHHh
Confidence 7777777888764 577788888654
No 47
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=79.97 E-value=55 Score=37.46 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCc
Q 002453 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (920)
Q Consensus 415 ~~R~~~~d~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~ 494 (920)
+.|+..-+++-.+...+|+..+|..+++.+..+ .-+..=..-.+++-+|+.+-+ ...++.++..- ..|
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY-~TP 812 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY-ETP 812 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-cCc
Confidence 456666677777888899988888887776421 223333445677778887642 13333333221 112
Q ss_pred hhh-hhhHHHHHHHHHHHHHHhhhHHHH----hchhchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCCcc
Q 002453 495 SEE-LKGFMHIVYRSLADVIGSYSKWIS----AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSN 567 (920)
Q Consensus 495 ~~~-~~~~~~l~~~t~~~~ig~y~~~l~----~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~~~~ 567 (920)
... ++| ++...+.+|+ ..-+|...+.+.+-.+|.| |..++.|+.-++++.-.|.... .
T Consensus 813 e~nVQnG-----------vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg----~ 877 (975)
T COG5181 813 EANVQNG-----------VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG----D 877 (975)
T ss_pred hhHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc----c
Confidence 111 122 1222222222 2346888888888888886 4468999999999999898643 4
Q ss_pred HHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHccCCc
Q 002453 568 LEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSN 604 (920)
Q Consensus 568 ~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~~p~ 604 (920)
.+..+.+..-+-. ..-.+.....+-||+-.+...+.+
T Consensus 878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4544444333211 112344555666666655555544
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=1.1e+02 Score=36.67 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccC---CCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 527 ARPLLLFLAAGISEAVSSNACASALRKICEDASALID---EPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 527 L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~---~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
+-++|-.|++.=+++++...||+|+..+|+-|+.... .-..+|.|+.-...+. . .+.-+...+++-.|-..-|
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie--y--iDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE--Y--IDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh--h--hHHHHHHHHHHHHHHhhcc
Confidence 3444445554445677999999999999999986332 1123555555433221 1 2334455555555544444
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHh
Q 002453 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (920)
Q Consensus 604 ~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~ 683 (920)
.+-.+...|...+.. +.-+....+ + .+ |-..+.+.+.+.+ ..-|+ +-+
T Consensus 288 ~AiL~AG~l~a~Lsy-lDFFSi~aQ---------R---------~A---laiaaN~Cksi~s------d~f~~----v~e 335 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSY-LDFFSIHAQ---------R---------VA---LAIAANCCKSIRS------DEFHF----VME 335 (1051)
T ss_pred HHHHhcccHHHHHHH-HHHHHHHHH---------H---------HH---HHHHHHHHhcCCC------ccchH----HHH
Confidence 332222222222110 000000000 0 00 1111112222222 12233 345
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Q 002453 684 FWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ 719 (920)
Q Consensus 684 i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~ 719 (920)
..|++..++++ .|...+|.+|.|+-+++..+..
T Consensus 336 alPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 336 ALPLLTPLLSY---QDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHHHHHHHhh---ccchhHHHHHHHHHHHHHhccc
Confidence 78999999973 6789999999999999887633
No 49
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=73.40 E-value=26 Score=29.12 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHH
Q 002453 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL 89 (920)
Q Consensus 10 ~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~L 89 (920)
...++.+-.++|+..|..|-..|.++. ++++-.....++.++ +..+|..|+..|.. +. . ...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~~-i~-------~---~~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALGR-IG-------D---PEA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHHC-CH-------H---HHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHHH-hC-------C---HHH
Confidence 344555645789999999999999775 588889999999543 47999999999972 21 1 223
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Q 002453 90 LNALLVAAKRFSSGPPQLLTQICLALS 116 (920)
Q Consensus 90 r~~Ll~~l~~~~~~~~~v~~kL~~~La 116 (920)
...|.+.+.. ..+..|+.....+|+
T Consensus 64 ~~~L~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence 3334443332 234556766666654
No 50
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=72.62 E-value=1.7e+02 Score=32.96 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHH
Q 002453 793 DLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNA 872 (920)
Q Consensus 793 D~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 872 (920)
+....|+.-+..++++.|..++. +.++.++...+.++..++.+...+++.-+..++.-.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~---~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~------------------ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLL---PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA------------------ 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC------------------
Confidence 37788999999999999998886 358889999999999999999999999888877641
Q ss_pred HHHHHHHhccHHHHHHHHH
Q 002453 873 MAIQVISHSGEGLVSNVVY 891 (920)
Q Consensus 873 ~~~~~l~~~G~~lv~~ll~ 891 (920)
.+++.+|-..||..++.
T Consensus 397 --~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 397 --PELISEHLSSLIPRLLK 413 (415)
T ss_pred --HHHHHHHHHHHHHHHHh
Confidence 33455566666666654
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.13 E-value=2e+02 Score=33.44 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=78.9
Q ss_pred CchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh----ch-
Q 002453 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NA- 527 (920)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~----~L- 527 (920)
+-.+++.++.+|..+-+....+.- .+.+.+++.....||.+. ||.-+ ++.|+++.+ |++ .+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l~-l~~l~~~~~----~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRLA-LKQLGRIAR----HSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHhc----CCHHHHHHhc
Confidence 346678888888877665543221 366677777666677643 55545 477887653 222 11
Q ss_pred -HHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhc--ccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccC
Q 002453 528 -RPLLLFLAAGISEAV--SSNACASALRKICEDASA--LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (920)
Q Consensus 528 -~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~--~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~ 602 (920)
..++..++.++.+++ |+..|+.++.+++..-.. .+..+.. ......+.. .-+...|.++++.++.+.+.-
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~----~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL----LSKLKSLMS-QSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch----HHHHHHHHh-ccCHHHHHHHHHHHHHHHhcC
Confidence 356778888888776 899999999999853211 1111111 222222221 124567899999988886543
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=71.94 E-value=2e+02 Score=33.47 Aligned_cols=127 Identities=13% Similarity=-0.063 Sum_probs=73.0
Q ss_pred chhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHH-HHH
Q 002453 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP-LLL 532 (920)
Q Consensus 454 W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~-vl~ 532 (920)
-...-.||-+++.++.. +- .+.+.+.+..+..++.+. ||.+++ .++.+. +...|+.++. .++
T Consensus 93 ~~~~~lAL~~l~~i~~~---~~----~~~l~~~v~~ll~~~~~~------VRk~A~-~~l~~i---~~~~p~~~~~~~~~ 155 (526)
T PF01602_consen 93 PYIRGLALRTLSNIRTP---EM----AEPLIPDVIKLLSDPSPY------VRKKAA-LALLKI---YRKDPDLVEDELIP 155 (526)
T ss_dssp HHHHHHHHHHHHHH-SH---HH----HHHHHHHHHHHHHSSSHH------HHHHHH-HHHHHH---HHHCHCCHHGGHHH
T ss_pred HHHHHHHHhhhhhhccc---ch----hhHHHHHHHHHhcCCchH------HHHHHH-HHHHHH---hccCHHHHHHHHHH
Confidence 34445566666655421 11 355555555555566532 676564 455544 3558888877 688
Q ss_pred HHHHhcccC--chHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHcc
Q 002453 533 FLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (920)
Q Consensus 533 ~l~~~l~~~--~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (920)
.+.+.+.++ .|..+|..++..+ +|...... ..++.+......+. ...++..+..+++.+......
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSS
T ss_pred HHhhhccCCcchhHHHHHHHHHHH--ccCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccC
Confidence 888888864 4888888888888 34332211 13444443333221 344667788888877765543
No 53
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.22 E-value=20 Score=34.47 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHhhccCCCCCCchhhHHHHHHHHHHHHhhcc-cCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhc
Q 002453 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (920)
Q Consensus 45 ~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~-w~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~ 123 (920)
...+|++. +...|+.|+..++..+... |.-+-+.. ...-+.++..+.+ ..+..++.-.|.+++.++....
T Consensus 30 i~~LL~s~------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSK------SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCC------ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45667653 3688999999999999986 87665444 3444447777765 4667788888999999988877
Q ss_pred cCCchHHHHH
Q 002453 124 EHGKPIEKLF 133 (920)
Q Consensus 124 ~W~~~i~~l~ 133 (920)
+||++.+++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 8999876653
No 54
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=69.49 E-value=1.4e+02 Score=33.38 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=94.2
Q ss_pred HHHHHhhhHHHHhchhchHHHHHHHHHhcccC---chHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChh
Q 002453 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEA---VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLE 586 (920)
Q Consensus 510 ~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~---~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~ 586 (920)
|.+-|.++-|-+ +...+|..+++-+.+. ..+..|-+.++++|+.=+..+.. +..-.+....+.-. ....+
T Consensus 314 m~~e~sfsvWeq----~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D-stE~ai~K~Leaa~--ds~~~ 386 (516)
T KOG2956|consen 314 MLCEGSFSVWEQ----HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD-STEIAICKVLEAAK--DSQDE 386 (516)
T ss_pred HHHccchhHHHH----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-hHHHHHHHHHHHHh--CCchh
Confidence 356677777753 4455555556656652 25666666666666665555532 12223333333211 11122
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhccccccccc
Q 002453 587 DEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVP 666 (920)
Q Consensus 587 ~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~ 666 (920)
.....-|....+++...+..+.. .+.|++.. + .+| .+..++..+..+|..+..
T Consensus 387 v~~~Aeed~~~~las~~P~~~I~-----~i~~~Ilt-------~------D~~--------~~~~~iKm~Tkl~e~l~~- 439 (516)
T KOG2956|consen 387 VMRVAEEDCLTTLASHLPLQCIV-----NISPLILT-------A------DEP--------RAVAVIKMLTKLFERLSA- 439 (516)
T ss_pred HHHHHHHHHHHHHHhhCchhHHH-----HHhhHHhc-------C------cch--------HHHHHHHHHHHHHhhcCH-
Confidence 23333344444444433222221 22233321 1 111 234457777778877653
Q ss_pred CCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhHhhHHHH
Q 002453 667 LPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLLPQV 728 (920)
Q Consensus 667 ~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~-~~~~~~l~~l 728 (920)
+-...++..+.|.+-+...+ .+..|+..+..|+..++..+| ..+.|+|.++
T Consensus 440 --------EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 440 --------EELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred --------HHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 23455667777777665542 566788888999999999999 6788877654
No 55
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=69.32 E-value=58 Score=28.62 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHH
Q 002453 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (920)
Q Consensus 543 v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~ 622 (920)
-+.+|-+++..+.+-|+..+. ...|+++.+.+..... .+-+...+++-...+..+++++ ....++++...++..
T Consensus 31 ek~~~l~si~~lI~~~~~~i~--~~~pQI~a~L~sal~~---~~l~~~al~~W~~fi~~L~~~~-l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 31 EKKRALRSIEELIKLGGSHIS--SARPQIMACLQSALEI---PELREEALSCWNCFIKTLDEED-LGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHh
Confidence 578899999999999998875 3788888877654321 2567788999999999999866 566676666555544
Q ss_pred H
Q 002453 623 I 623 (920)
Q Consensus 623 l 623 (920)
|
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
No 56
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.86 E-value=1e+02 Score=29.57 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=69.6
Q ss_pred CCCchHHHHHHHHHHHHhhh-hHHHHhcchhhhHHHHHHHHHhhccCChh-HHHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 002453 790 QEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMHRG-AALAAMSYLSCFLEECLASLLGYTTSIPE 867 (920)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~-p~~~~~s~~~~l~~il~~~l~~l~~~e~~-~~~~~~~fl~~li~~~~~~~~~~~~~~~~ 867 (920)
.+|+-+-.-..++...++.| |..|......++..++. .++.+++. ..++++.-++.++...++.
T Consensus 37 ~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~----~L~~~~~~~~~~~ai~~L~~l~~~~~~~---------- 102 (165)
T PF08167_consen 37 KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLS----ILEKPDPPSVLEAAIITLTRLFDLIRGK---------- 102 (165)
T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHhcCC----------
Confidence 45777788899999999998 66665654456665544 45444444 4778888888888875541
Q ss_pred chHHHHHHHHHHhccHHHHHHHHHHhc-cCCcccchhhhHHHH
Q 002453 868 GSFNAMAIQVISHSGEGLVSNVVYALL-GVSAMSRVNTSFNLK 909 (920)
Q Consensus 868 ~~~~~~~~~~l~~~G~~lv~~ll~~~~-g~~~rs~l~~~~e~l 909 (920)
.+-.+++..++.+.++..++.-+. +..+-..++.++.++
T Consensus 103 ---p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 103 ---PTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred ---CchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 133677788888999988888776 344444444444444
No 57
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.70 E-value=1.1e+02 Score=32.05 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=100.1
Q ss_pred hhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 524 QTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 524 p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
.+-...+++|+.+.+.|......|..++..+. +++..-. ......+..+.....-......+|..+++-+-.+++...
T Consensus 37 ~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 37 RQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFSP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCCh-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 34457778888888888776666688888888 4433111 111222333333222234567788888888888876532
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHh
Q 002453 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (920)
Q Consensus 604 ~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~ 683 (920)
..+..+-...+..+-++++.. .||.- |..+.+.+..+. +.+. .....+.
T Consensus 115 ------~~l~~~~~~fv~~~i~~~~gE------kDPRn----Ll~~F~l~~~i~---~~~~------------~~~~~e~ 163 (262)
T PF14500_consen 115 ------EALQSMGDDFVYGFIQLIDGE------KDPRN----LLLSFKLLKVIL---QEFD------------ISEFAED 163 (262)
T ss_pred ------HHHHhchhHHHHHHHHHhccC------CCHHH----HHHHHHHHHHHH---Hhcc------------cchhHHH
Confidence 223344444555555555554 24422 122222222222 2111 0113344
Q ss_pred HHHHHHHHHHh---hhccch--HHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHcc
Q 002453 684 FWPMLEKLFRS---EHMENG--NLSTAACRALSLAIQSSGQHFVT-LLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFG 757 (920)
Q Consensus 684 i~~~l~~i~~~---~~~~~~--~v~e~~c~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~~L~l~s~lv~~~~ 757 (920)
++.++.....- .-++|+ ...|.+-+.++.++.+-. .+.| .+|.+++.+.+.... -....|.++..++..||
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~--~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPS--VKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHCC
Confidence 44444443311 112343 223555555555555332 3333 356666666543211 12335778888889998
Q ss_pred CC
Q 002453 758 HK 759 (920)
Q Consensus 758 ~~ 759 (920)
..
T Consensus 241 ~~ 242 (262)
T PF14500_consen 241 AD 242 (262)
T ss_pred HH
Confidence 63
No 58
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=66.69 E-value=61 Score=28.47 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=62.6
Q ss_pred HHHHHHHHhcccCc------hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccC
Q 002453 529 PLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (920)
Q Consensus 529 ~vl~~l~~~l~~~~------v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~ 602 (920)
.+++.+-+.++|++ -+.+|-.|+..+.+-|+.++. ...|++..+.+.-.. .++-+...+++-...+..+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~---~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALE---IPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHHhC
Confidence 45555556666533 378899999999999998874 378888887764221 3456788899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 002453 603 SNKELKNNLLARLLSSSYEAI 623 (920)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l 623 (920)
++++ ....+++.+.-+...|
T Consensus 86 ~~~~-l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 86 KEEE-LGPLLDQIFAAILPLW 105 (107)
T ss_pred CHHH-HHHHHHHHHHHHHHhc
Confidence 9765 5666666665555443
No 59
>PTZ00429 beta-adaptin; Provisional
Probab=65.41 E-value=3.2e+02 Score=33.33 Aligned_cols=95 Identities=8% Similarity=0.107 Sum_probs=48.2
Q ss_pred CCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHH
Q 002453 452 IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLL 531 (920)
Q Consensus 452 ~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl 531 (920)
..|.++ +.|..+....+.++.. ...++..+.....|.. .+|+..++ .++-.+.... +|+.+..++
T Consensus 232 ~EW~Qi----~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N------~AVVl~Ai-k~il~l~~~~--~~~~~~~~~ 296 (746)
T PTZ00429 232 NEWGQL----YILELLAAQRPSDKES--AETLLTRVLPRMSHQN------PAVVMGAI-KVVANLASRC--SQELIERCT 296 (746)
T ss_pred ChHHHH----HHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCC------HHHHHHHH-HHHHHhcCcC--CHHHHHHHH
Confidence 458665 5666666655533221 1233333332223332 23666564 6766665432 344444443
Q ss_pred HHH----HHhc-ccCchHHHHHHHHHHHHHHhhcc
Q 002453 532 LFL----AAGI-SEAVSSNACASALRKICEDASAL 561 (920)
Q Consensus 532 ~~l----~~~l-~~~~v~~~Aa~al~~lc~~c~~~ 561 (920)
..+ +.-. .+|+++-.+-..+..+...++..
T Consensus 297 ~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~l 331 (746)
T PTZ00429 297 VRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNL 331 (746)
T ss_pred HHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHH
Confidence 222 1112 24668888888888887766543
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=63.37 E-value=22 Score=29.52 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHH
Q 002453 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (920)
Q Consensus 8 ~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL 70 (920)
++...+..+..++|+..|.+|-..|.++. +++++.....++.+++ +..+|..|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 44555555556789999999999999996 5999999999998754 356788887765
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.76 E-value=1.8e+02 Score=31.36 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=82.0
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHH
Q 002453 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (920)
Q Consensus 450 ~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~ 529 (920)
.+.+-++.|.++.-|.-..+.+....+-..+.-+..++. ..+++... +|..+ +++||... ..||..-..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~------lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAE------LRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHH------HHHHH-HHHHHHHH---hcCHHHHHH
Confidence 356799999999999999988863222111122333444 34444322 67767 49999875 577753332
Q ss_pred -----HHHHHHHhccc--Cc-hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHcc
Q 002453 530 -----LLLFLAAGISE--AV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (920)
Q Consensus 530 -----vl~~l~~~l~~--~~-v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~ 601 (920)
.++.|+..+.. |. ++..|-.|+..+.+.-..-...-.-++.+.-+...+.....+...+.+++.=++.+++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 34445555542 32 56666666666655433211000001122333334444445677788888888888887
Q ss_pred CCchH
Q 002453 602 VSNKE 606 (920)
Q Consensus 602 ~p~~~ 606 (920)
.+.++
T Consensus 242 ~~s~~ 246 (342)
T KOG2160|consen 242 DKSDE 246 (342)
T ss_pred hhhhh
Confidence 66644
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=3.5e+02 Score=32.09 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhccc
Q 002453 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (920)
Q Consensus 504 l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l 562 (920)
+|.+++ .++ -.-|-+-|+.|.++++-|.+.|.+|+ |+++|..-|-.++++.++..
T Consensus 160 vRKkAI-l~l---ykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 160 VRKKAI-LLL---YKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHH-HHH---HHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 565554 222 23345679999999999999999765 88888777766666665543
No 63
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=58.72 E-value=2.5e+02 Score=29.88 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred chHHHHHHHHHhcccCc-hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 526 NARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 526 ~L~~vl~~l~~~l~~~~-v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
..-.+|.-|++++.+|. ++.....++-.+|.+|+.... ..+.+.++-.-+.+..++.+++..++.++..++..-.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44567788889999877 899999999999999996442 3445555555666678899999999999999986543
No 64
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=51.26 E-value=76 Score=30.48 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHH
Q 002453 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFN 871 (920)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~ 871 (920)
=|++...|+++..++..|+..+- +..++.....|+.- +.+...-+...+..++...... ..
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~------~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~------------v~ 101 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID------ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE------------VL 101 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH------------HH
Confidence 57899999999999998765532 34567788888865 8888888888888887664321 11
Q ss_pred HHHHHHHHhccHHHHHHHHHHhccCCcccchhhhHHHHHHHH
Q 002453 872 AMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAIF 913 (920)
Q Consensus 872 ~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l~~~~e~l~~l~ 913 (920)
+. +...-+.+-..+-..+..++...++|...|..|+.+
T Consensus 102 ~~----Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~l 139 (169)
T PF08623_consen 102 QR----LDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVL 139 (169)
T ss_dssp HC----CTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHH
Confidence 22 333344444444455666777788888888777764
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.89 E-value=4.6e+02 Score=30.53 Aligned_cols=134 Identities=14% Similarity=0.083 Sum_probs=85.8
Q ss_pred CchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh-chhchHHHH
Q 002453 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLL 531 (920)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~-~p~~L~~vl 531 (920)
+-.-.|..--+.+.+++.+. ++++.+++..+.-..+.-. -|.|. .+++.+.+.++.. .-.+|.+++
T Consensus 294 deYVRnvt~ra~~vva~alg-------v~~llpfl~a~c~SrkSw~-----aRhTg-iri~qqI~~llG~s~l~hl~~l~ 360 (975)
T COG5181 294 DEYVRNVTGRAVGVVADALG-------VEELLPFLEALCGSRKSWE-----ARHTG-IRIAQQICELLGRSRLSHLGPLL 360 (975)
T ss_pred cHHHHHHHHHHHHHHHHhhC-------cHHHHHHHHHHhcCccchh-----hhchh-hHHHHHHHHHhCccHHhhhhhHH
Confidence 33445666667777777653 4677778877764332111 24444 4888888887765 346888999
Q ss_pred HHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHccCCc
Q 002453 532 LFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSN 604 (920)
Q Consensus 532 ~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~~p~ 604 (920)
..+-.++.|.. ++-.+|.|+..+.+... |+-++.+..+..-+-. ..-.......+..|.|.+|--+.+
T Consensus 361 ~ci~~~l~D~~~~vRi~tA~alS~lae~~~-----Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~p 432 (975)
T COG5181 361 KCISKLLKDRSRFVRIDTANALSYLAELVG-----PYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSP 432 (975)
T ss_pred HHHHHHhhccceeeeehhHhHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCCh
Confidence 99999988744 78888999998886544 4455555554433311 112345667778888888876654
No 66
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=50.77 E-value=40 Score=32.85 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHHhhhHHHHhchhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhh
Q 002453 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDAS 559 (920)
Q Consensus 511 ~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~ 559 (920)
.++..++++..++|..+.+.++.+..+|.|++ |+..|...+.++....-
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ 57 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM 57 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc
Confidence 45555666778999999999999999999865 89999999998876543
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=50.74 E-value=4.6e+02 Score=30.48 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=95.5
Q ss_pred HHHHHHHhcccCc---hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchH
Q 002453 530 LLLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (920)
Q Consensus 530 vl~~l~~~l~~~~---v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~ 606 (920)
.+.-+..++.+.. .+..+.-++...|..-+... .|+..+.+-.+...+. ...+..|....+++-.+.++++..-
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~~~~--d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILTNFG--DKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHHHhh--ccchhhhHHHHHHHHHHHHhcCcch
Confidence 3444455555422 34467888888887776433 3545555555554432 3357788888999999998888643
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHH
Q 002453 607 LKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWP 686 (920)
Q Consensus 607 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~ 686 (920)
.+ .++.+++..+... .+ |+ . ..++..+.+++.+. . .-.-..+..+.|
T Consensus 252 -VK----~llpsll~~l~~~---kW----rt-K-------~aslellg~m~~~a---p----------~qLs~~lp~iiP 298 (569)
T KOG1242|consen 252 -VK----LLLPSLLGSLLEA---KW----RT-K-------MASLELLGAMADCA---P----------KQLSLCLPDLIP 298 (569)
T ss_pred -hh----HhhhhhHHHHHHH---hh----hh-H-------HHHHHHHHHHHHhc---h----------HHHHHHHhHhhH
Confidence 33 3444444443332 11 10 0 02233344333110 0 112235577888
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhh-hhhhHhhHHHHHHHHH
Q 002453 687 MLEKLFRSEHMENGNLSTAACRALSLAIQSS-GQHFVTLLPQVLDCLS 733 (920)
Q Consensus 687 ~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~-~~~~~~~l~~l~~~l~ 733 (920)
.+..++ |...++|.++.-.++.+.-+.. .+++.+++|.+++.+.
T Consensus 299 ~lsevl---~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 299 VLSEVL---WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALA 343 (569)
T ss_pred HHHHHH---ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 887766 5688999999888888876655 3456677777666553
No 68
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.08 E-value=4.7e+02 Score=30.11 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=66.7
Q ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCc
Q 002453 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEG 868 (920)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~ 868 (920)
.+++|..+.+-+++..+.+.+-..+...++ .+-.+++..+..-.+++.+.+...+.||..+-..-.. ++
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np~-~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~-----~~----- 326 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNPE-EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTL-----TD----- 326 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCC-cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhc-----cc-----
Confidence 577888888888888888877666666654 3334556666667789999999999999987665443 11
Q ss_pred hHHHHHHHHHHhccHHHHHHHHHHhc
Q 002453 869 SFNAMAIQVISHSGEGLVSNVVYALL 894 (920)
Q Consensus 869 ~~~~~~~~~l~~~G~~lv~~ll~~~~ 894 (920)
......++..+-..+|+.+...+.
T Consensus 327 --~~~~~~~frpy~~rLvs~l~~h~q 350 (559)
T KOG2081|consen 327 --DDEALGIFRPYFLRLVSLLKRHVQ 350 (559)
T ss_pred --cHHHHHHhHHHHHHHHHHHHHHcc
Confidence 133445677788888888887765
No 69
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.70 E-value=4.1e+02 Score=32.12 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh---hhhcCcch---HH-HHHHHHHHHccCC-CCCcchhHHHHHHHh
Q 002453 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF---VSFQNHEC---YI-RTASVVIEEFGHK-DEYGPLFVTTFERFS 774 (920)
Q Consensus 703 ~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~~---~L-~l~s~lv~~~~~~-~~~~~~~~~l~~~l~ 774 (920)
-|-+.+++-|++..+.....|+.|+++..+.+-. .+.+..|- || ...+.++..-++. +...+.+..-+....
T Consensus 565 neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f 644 (960)
T KOG1992|consen 565 NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF 644 (960)
T ss_pred cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 3566777777777777777777777666665522 22211222 33 3556666554442 222233332222112
Q ss_pred hhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhh
Q 002453 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (920)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~ 854 (920)
+.+ + + .+--|.+-.-|.+++.++..+-..+-.+..++++.++.=.+|..+.+=+ +....+..|+..+
T Consensus 645 q~I-l----~----eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNip----alvrLl~aflk~g 711 (960)
T KOG1992|consen 645 QTI-L----S----EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIP----ALVRLLQAFLKTG 711 (960)
T ss_pred HHH-H----H----HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcH----HHHHHHHHHHhcC
Confidence 222 1 1 1223566677888888888765521111113444444444555444444 3444555666554
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHH-----hccHHHHHHHHHHhc
Q 002453 855 LASLLGYTTSIPEGSFNAMAIQVIS-----HSGEGLVSNVVYALL 894 (920)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~G~~lv~~ll~~~~ 894 (920)
...- ++.+ .-+..-..++.++. +||-.|+.+++..+-
T Consensus 712 ~~~~-~~~~--~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~ 753 (960)
T KOG1992|consen 712 SQIV-EAAD--KLSGILGIFQKLIASKANDHHGFYLLNTIIESIP 753 (960)
T ss_pred chhh-cccc--cchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC
Confidence 3211 0000 00133466677775 888888888776654
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=47.65 E-value=5.6e+02 Score=30.62 Aligned_cols=378 Identities=11% Similarity=0.125 Sum_probs=185.3
Q ss_pred CchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHh-chhchHHHH
Q 002453 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLL 531 (920)
Q Consensus 453 ~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~-~p~~L~~vl 531 (920)
+-.-.+..--+++.+++.+. ++.+.+++..++...+.-. -|.|. ..++.+.+.+... --.+|.+++
T Consensus 489 deYVRnttarafavvasalg-------ip~llpfLkavc~SkkSwq-----aRhTg-IkivqqIail~Gcsvlphl~~lv 555 (1172)
T KOG0213|consen 489 DEYVRNTTARAFAVVASALG-------IPALLPFLKAVCGSKKSWQ-----ARHTG-IKIVQQIAILSGCSVLPHLKPLV 555 (1172)
T ss_pred cHHHHHHHHHHHHHHHHHhC-------cHHHHHHHHHHhccccchh-----hhchh-hHHHHHHHHHhcchhhhhhHHHH
Confidence 33345666666666666543 4777788877764432111 24444 4777777776654 235788999
Q ss_pred HHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHccCCchHH
Q 002453 532 LFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKEL 607 (920)
Q Consensus 532 ~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~~p~~~~ 607 (920)
..+-.++.|.. |+.-+|.|+..+.+... |+-++.+-.+..-|-. ..-.......+..|+|++|--+..+-
T Consensus 556 ~ii~~gl~De~qkVR~itAlalsalaeaa~-----Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~ey- 629 (1172)
T KOG0213|consen 556 KIIEHGLKDEQQKVRTITALALSALAEAAT-----PYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEY- 629 (1172)
T ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHH-
Confidence 99999998743 88889999998887654 4445555444433311 11134567788899999987665432
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhh----------------cccccccc---cCC
Q 002453 608 KNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG----------------TVFSHLPV---PLP 668 (920)
Q Consensus 608 ~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~----------------~i~~~l~~---~~~ 668 (920)
...+-...+--++ ....++ | +.... .++..+.+++ .+|+.+-. ..+
T Consensus 630 a~yyTrevmlil~-------rEf~sP----D-eemkk---ivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~d 694 (1172)
T KOG0213|consen 630 ASYYTREVMLILI-------REFGSP----D-EEMKK---IVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALD 694 (1172)
T ss_pred HHHhHHHHHHHHH-------HhhCCC----h-HHHHH---HHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhcc
Confidence 2233322221111 111110 1 11111 1222333332 11111100 000
Q ss_pred CCCCCC---chHHHHHHh--HHHHHHHHHHhhhccchH-----HHHHHHHHHHHHHHhhhh-hhHh-hHHHHHHHHHHhh
Q 002453 669 TNPAGD---DPIFALLRV--FWPMLEKLFRSEHMENGN-----LSTAACRALSLAIQSSGQ-HFVT-LLPQVLDCLSTNF 736 (920)
Q Consensus 669 ~~~~~~---~p~~~~~~~--i~~~l~~i~~~~~~~~~~-----v~e~~c~~~~~~~~~~~~-~~~~-~l~~l~~~l~~~~ 736 (920)
.. ... +-.+.+.++ .-|++..++. .+..+++ ++|.+-+++. .+|. ++.. +-..+++-++-.|
T Consensus 695 rr-~ykqlv~ttv~ia~KvG~~~~v~R~v~-~lkde~e~yrkm~~etv~ri~~----~lg~~diderleE~lidgil~Af 768 (1172)
T KOG0213|consen 695 RR-NYKQLVDTTVEIAAKVGSDPIVSRVVL-DLKDEPEQYRKMVAETVSRIVG----RLGAADIDERLEERLIDGILYAF 768 (1172)
T ss_pred cc-chhhHHHHHHHHHHHhCchHHHHHHhh-hhccccHHHHHHHHHHHHHHHh----ccccccccHHHHHHHHHHHHHHH
Confidence 00 000 001111111 1344444444 2444444 3344333333 3322 1111 1223444444445
Q ss_pred hh-hcCcchHHHHHHHHHHHccCCCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHH---hhhhHH
Q 002453 737 VS-FQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFV---RTSRKE 812 (920)
Q Consensus 737 ~~-~~~~~~~L~l~s~lv~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l---~~~p~~ 812 (920)
+. +...+..|.....++..+|.. +.+.+.+++..+ +-.|.+ -.|++.+-...+++++. +.|...
T Consensus 769 qeqtt~d~vml~gfg~V~~~lg~r--~kpylpqi~sti-----L~rLnn-----ksa~vRqqaadlis~la~Vlktc~ee 836 (1172)
T KOG0213|consen 769 QEQTTEDSVMLLGFGTVVNALGGR--VKPYLPQICSTI-----LWRLNN-----KSAKVRQQAADLISSLAKVLKTCGEE 836 (1172)
T ss_pred HhcccchhhhhhhHHHHHHHHhhc--cccchHHHHHHH-----HHHhcC-----CChhHHHHHHHHHHHHHHHHHhccHH
Confidence 32 213444566777788888863 233344434432 222332 34788877666666554 444322
Q ss_pred HHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHH
Q 002453 813 VLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYA 892 (920)
Q Consensus 813 ~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~ 892 (920)
-+- ..+..++ ...+....+++.-+++.-+..+.+...-. +..||-.++-.++..++.+.-+.+..+++.-
T Consensus 837 ~~m---~~lGvvL---yEylgeeypEvLgsILgAikaI~nvigm~----km~pPi~dllPrltPILknrheKVqen~IdL 906 (1172)
T KOG0213|consen 837 KLM---GHLGVVL---YEYLGEEYPEVLGSILGAIKAIVNVIGMT----KMTPPIKDLLPRLTPILKNRHEKVQENCIDL 906 (1172)
T ss_pred HHH---HHhhHHH---HHhcCcccHHHHHHHHHHHHHHHHhcccc----ccCCChhhhcccchHhhhhhHHHHHHHHHHH
Confidence 110 1122222 24667788888888887777777766543 2334444555556666655555555554443
No 71
>PRK09687 putative lyase; Provisional
Probab=47.41 E-value=3.7e+02 Score=28.39 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=69.5
Q ss_pred cCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002453 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (920)
Q Consensus 431 l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~ 510 (920)
+|.+..+..++..+. ..+|.-...+.++||.+.. .+ +.+...|.....++.. .||..++
T Consensus 155 ~~~~~ai~~L~~~L~-----d~~~~VR~~A~~aLg~~~~-----~~----~~~~~~L~~~L~D~~~------~VR~~A~- 213 (280)
T PRK09687 155 INDEAAIPLLINLLK-----DPNGDVRNWAAFALNSNKY-----DN----PDIREAFVAMLQDKNE------EIRIEAI- 213 (280)
T ss_pred cCCHHHHHHHHHHhc-----CCCHHHHHHHHHHHhcCCC-----CC----HHHHHHHHHHhcCCCh------HHHHHHH-
Confidence 344445555544442 3457777888888887721 11 2233333322233321 2666564
Q ss_pred HHHHhhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhHHH
Q 002453 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEE 590 (920)
Q Consensus 511 ~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (920)
+.+|++. + +.+++.|++.+.++.++..|+.|+..+-. +..+|.|..+... ..+...+.+
T Consensus 214 ~aLg~~~-----~----~~av~~Li~~L~~~~~~~~a~~ALg~ig~--------~~a~p~L~~l~~~----~~d~~v~~~ 272 (280)
T PRK09687 214 IGLALRK-----D----KRVLSVLIKELKKGTVGDLIIEAAGELGD--------KTLLPVLDTLLYK----FDDNEIITK 272 (280)
T ss_pred HHHHccC-----C----hhHHHHHHHHHcCCchHHHHHHHHHhcCC--------HhHHHHHHHHHhh----CCChhHHHH
Confidence 7888753 2 36777788888887788788888776543 2345666665432 225555666
Q ss_pred HHHHH
Q 002453 591 VVGAI 595 (920)
Q Consensus 591 l~eai 595 (920)
..+++
T Consensus 273 a~~a~ 277 (280)
T PRK09687 273 AIDKL 277 (280)
T ss_pred HHHHH
Confidence 65554
No 72
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.83 E-value=5e+02 Score=29.78 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhc
Q 002453 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (920)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~ 833 (920)
-..|.+.-+||+++.-+..+.|..+-..+......+.+|.-.+++
T Consensus 568 Lk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMT 612 (748)
T KOG4541|consen 568 LKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMT 612 (748)
T ss_pred HhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCc
Confidence 367999999999999999999999876655566666666555555
No 73
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=43.48 E-value=6.6e+02 Score=30.20 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhc
Q 002453 505 VYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASA 560 (920)
Q Consensus 505 ~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~ 560 (920)
..++ +.++|+|-.|+.-+--.=...++.+.+.+...+++.+||.++..+..+--+
T Consensus 210 ~~~c-Ldc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMk 264 (980)
T KOG2021|consen 210 INSC-LDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMK 264 (980)
T ss_pred HHHH-HHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC
Confidence 4434 699999999997643333456677777777777999999999988876443
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.17 E-value=6.9e+02 Score=29.82 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhc-cCCchHHHHHHHhhhccCCCchhHHHHHHHhhhhhhc
Q 002453 82 QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEV 160 (920)
Q Consensus 82 ~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~-~W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~EE~ 160 (920)
+++-...|-+-++..+.. .-++||.|-...|=.+++++| .-...++-+.+.+... ++....+. ..+++|=.
T Consensus 138 TpdLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAA---V~VICELA 209 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAA---VSVICELA 209 (877)
T ss_pred CchhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHH---HHHHHHHH
Confidence 344455566666666542 446899998888888888876 3344556666666542 23222222 23344322
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHHcc
Q 002453 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAG 227 (920)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~ 227 (920)
- +- + +....-+|..+.++...-. .=+...++|-|.+-.++.
T Consensus 210 r---Kn----P--------knyL~LAP~ffkllttSsN-----------NWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 210 R---KN----P--------QNYLQLAPLFYKLLVTSSN-----------NWVLIKLLKLFAALTPLE 250 (877)
T ss_pred h---hC----C--------cccccccHHHHHHHhccCC-----------CeehHHHHHHHhhccccC
Confidence 1 10 1 0122345666666643211 126778888888877654
No 75
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.60 E-value=1.1e+03 Score=31.17 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=50.5
Q ss_pred chhhhHHHHHHHHHHHHHcccccccCcchhcccchHHHHHHhcCCC--CcHHHHHHHHHHHHhccCChhHHHHhhhhhhH
Q 002453 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLK 285 (920)
Q Consensus 208 ~~~~~~~~~l~c~~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~ 285 (920)
+..+++.+|+||++.-+.. ++..+.....-..+-+-+.|. ..+++|+|.+...+-..+++....+..+ .
T Consensus 828 ~~ialRtkAlKclS~ive~------Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i---~ 898 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEA------DPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQI---I 898 (1692)
T ss_pred chHHHHHHHHHHHHHHHhc------ChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHH---H
Confidence 4567999999999998874 333333333333444444443 4468888888765544433221111111 1
Q ss_pred hhhhchhhcCCCHhHHhhHHHHHHHHHHhh
Q 002453 286 ELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (920)
Q Consensus 286 ~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~ 315 (920)
+.+.+...-+.+...++..++++.+
T Consensus 899 -----erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 899 -----ERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----hhcCCCchhHHHHHHHHHHHHHHhC
Confidence 1222333445566666666666654
No 76
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.50 E-value=6.7e+02 Score=28.88 Aligned_cols=233 Identities=14% Similarity=0.167 Sum_probs=112.7
Q ss_pred hhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh---ch--HHH
Q 002453 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT---NA--RPL 530 (920)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~---~L--~~v 530 (920)
++|| -|+|..||.+-.+......-.....++..+...|+.. ++-.++ |.+|..+. ..|. +. ..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~------v~eQav-WALgNIag---ds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD------VREQAV-WALGNIAG---DSPDCRDYVLSCGA 195 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH------HHHHHH-HHHhcccc---CChHHHHHHHhhcc
Confidence 4554 6899988876543222110001112223333444422 555564 88887653 2232 11 233
Q ss_pred HHHHHHhcccCc---hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--CCCChhhHHHHHHHHHHHHccCCch
Q 002453 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNK 605 (920)
Q Consensus 531 l~~l~~~l~~~~---v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~ii~~~p~~ 605 (920)
+.-++..+..+. ..+.+..++.+||+.+.. ++.++.+..+...+.. ...+.+......=+++++...-+ +
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n-e 270 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN-E 270 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-H
Confidence 445555555433 567889999999987752 2233333333333321 23466667777778887765433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHH-HHHhH
Q 002453 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFA-LLRVF 684 (920)
Q Consensus 606 ~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~-~~~~i 684 (920)
. .... +-..+..++..++..... ..+ .-++..+|.|.-+-+. -... +-...
T Consensus 271 ~-iq~v---i~~gvv~~LV~lL~~~~~-~v~-------------~PaLRaiGNIvtG~d~----------QTq~vi~~~~ 322 (514)
T KOG0166|consen 271 K-IQMV---IDAGVVPRLVDLLGHSSP-KVV-------------TPALRAIGNIVTGSDE----------QTQVVINSGA 322 (514)
T ss_pred H-HHHH---HHccchHHHHHHHcCCCc-ccc-------------cHHHhhccceeeccHH----------HHHHHHhcCh
Confidence 2 1111 222344455555544311 001 1134444443322110 0111 22456
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-----HhhHHHHHHHHHH
Q 002453 685 WPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-----VTLLPQVLDCLST 734 (920)
Q Consensus 685 ~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~-----~~~l~~l~~~l~~ 734 (920)
+|.+..++.. -+. ..+...+|-.+..+..--..+. ..++|.++..+..
T Consensus 323 L~~l~~ll~~-s~~-~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 323 LPVLSNLLSS-SPK-ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred HHHHHHHhcc-Ccc-hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 7888887762 222 2366667777777644222222 2466777665543
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=38.37 E-value=7.7e+02 Score=29.56 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCchH--------HHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchh
Q 002453 410 PDGLVQFRMNLVELLVDICQLLRSAT--------FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481 (920)
Q Consensus 410 ~~~f~~~R~~~~d~l~~~~~il~~~~--------~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~ 481 (920)
.||-..||+-+.+++..+...+|... ++.-++..++.+. .+.-..|-+++.+...+.....+ +++
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt------t~d~vml~gfg~V~~~lg~r~kp-ylp 798 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT------TEDSVMLLGFGTVVNALGGRVKP-YLP 798 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc------cchhhhhhhHHHHHHHHhhcccc-chH
Confidence 34456799999999999988777531 2222222222211 11125677788877666432232 267
Q ss_pred HHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchh--chHHHHHHHHHhcc--cCchHHHHHHHHHHHHHH
Q 002453 482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGIS--EAVSSNACASALRKICED 557 (920)
Q Consensus 482 ~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~--~L~~vl~~l~~~l~--~~~v~~~Aa~al~~lc~~ 557 (920)
+|+.-+.-..++++.. +|..++ .++++.+.-++...+ .+..+=..|...+. .|++-..--.|+..|+..
T Consensus 799 qi~stiL~rLnnksa~------vRqqaa-dlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv 871 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAK------VRQQAA-DLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV 871 (1172)
T ss_pred HHHHHHHHHhcCCChh------HHHHHH-HHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 7776554444554432 677775 999999998876432 34444444556666 377776667777777765
Q ss_pred hhc-ccCCCc---cHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCc
Q 002453 558 ASA-LIDEPS---NLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (920)
Q Consensus 558 c~~-~l~~~~---~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~ 604 (920)
-+- .+. |+ .+|.|.-+..+ -..+.+++.+.-+|.|...-|.
T Consensus 872 igm~km~-pPi~dllPrltPILkn-----rheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 872 IGMTKMT-PPIKDLLPRLTPILKN-----RHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred ccccccC-CChhhhcccchHhhhh-----hHHHHHHHHHHHHHHHHhcCcc
Confidence 421 121 21 12222222211 1234566677777777655444
No 78
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=38.35 E-value=2.7e+02 Score=34.66 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHhhhHHHHhchhchHHHHHHHHHh-ccc--CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhH
Q 002453 512 VIGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDE 588 (920)
Q Consensus 512 ~ig~y~~~l~~~p~~L~~vl~~l~~~-l~~--~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~ 588 (920)
+-+..+..++..|.|..++++=++.. +.| +.++..|+.|+.++...-.+.+.. +.++.++.... ..+...|
T Consensus 526 cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~l-----s~~~~~r 599 (1133)
T KOG1943|consen 526 CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTL-----SKDASMR 599 (1133)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhc-----CCChHHh
Confidence 33444555667788889998888754 553 668999999999999888877653 45555554321 1234555
Q ss_pred HHHHHHHHHHHcc
Q 002453 589 EEVVGAISLILGS 601 (920)
Q Consensus 589 ~~l~eai~~ii~~ 601 (920)
...+-+.|.++.+
T Consensus 600 ~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGA 612 (1133)
T ss_pred hhhHHHHHHHHHH
Confidence 6666666666544
No 79
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.93 E-value=9e+02 Score=29.61 Aligned_cols=178 Identities=13% Similarity=0.097 Sum_probs=101.4
Q ss_pred HHHHhhhHHHHhc--hh--chHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCC
Q 002453 511 DVIGSYSKWISAF--QT--NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (920)
Q Consensus 511 ~~ig~y~~~l~~~--p~--~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~ 584 (920)
+-+....+|++++ .. ....++...+..+.|.+ +--.|-.++..+|+--.. ..+|.+...|... +....
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL~e~Y~s~-k~k~~ 819 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDLSEEYLSE-KKKLQ 819 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHHHHHHHhc-ccCCC
Confidence 3445556788743 22 55788999999888754 777888888899986433 2567777777763 23444
Q ss_pred hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhccccccc
Q 002453 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (920)
Q Consensus 585 ~~~~~~l~eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~ 664 (920)
.+.+.++=|+|+.++++..+ ....|...++ +..-..+.. ++ ..+. ++.+..+..+.-+.+...
T Consensus 820 ~d~~lkVGEai~k~~qa~Ge--l~~~y~~~Li----~tfl~gvre-pd-------~~~R---aSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGE--LVFKYKAVLI----NTFLSGVRE-PD-------HEFR---ASSLANLGQLCQLLAFQV 882 (982)
T ss_pred ccceehHHHHHHHHHHHhcc--HHHHHHHHHH----HHHHHhcCC-ch-------HHHH---HhHHHHHHHHHHHHhhhh
Confidence 68899999999999988764 2344444444 333333321 11 1110 012222222221111111
Q ss_pred ccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHH
Q 002453 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (920)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~ 726 (920)
+ + .+-++..-+..+.. -.++.-+.-++..+++..++..|.++.|++.
T Consensus 883 s---------d----~~~ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 883 S---------D----FFHEVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred h---------H----HHHHHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 0 1 22222222222222 2355566788889999999999887776553
No 80
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.50 E-value=2.8e+02 Score=23.59 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=47.7
Q ss_pred HHHHHHhcccCc--hHHHHHHHHHHHHHHhh-cccCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCc
Q 002453 531 LLFLAAGISEAV--SSNACASALRKICEDAS-ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSN 604 (920)
Q Consensus 531 l~~l~~~l~~~~--v~~~Aa~al~~lc~~c~-~~l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~ 604 (920)
++-.+..+++|. ++.+|-..++++.++.. .. ...+.++.+....... -+.-.-+..+.|++.++...|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~----~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPV----IDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcch----hhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 344455566655 89999999999998877 22 2556666665443221 2556788999999999988875
No 81
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.14 E-value=5.5e+02 Score=28.40 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcc------hHHHHHHHHHHHccCC-CC--CcchhHHHHHHH
Q 002453 703 STAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE------CYIRTASVVIEEFGHK-DE--YGPLFVTTFERF 773 (920)
Q Consensus 703 ~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~------~~L~l~s~lv~~~~~~-~~--~~~~~~~l~~~l 773 (920)
..++|++++...+..+..+.+.+...++.+++.|... +.. +.+++.+.+...-... .. -.+.+.++..-+
T Consensus 228 R~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~-~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff 306 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN-PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFF 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC-CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHH
Confidence 3466666666666666666666666667777767654 322 2456666654322111 11 112222333334
Q ss_pred hhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhH
Q 002453 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA 839 (920)
Q Consensus 774 ~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~ 839 (920)
.+.+ ++.|+ .+...+|=+..+.+.++..+-..-|. +.+..+++..+..|..++...
T Consensus 307 ~~~v-~peL~--~~~~~~piLka~aik~~~~Fr~~l~~-------~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 307 SQHV-LPELQ--PDVNSHPILKADAIKFLYTFRNQLPK-------EQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp HHHT-CHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H-------HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHh-HHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHhCCCCcch
Confidence 4544 45565 24467787888888888777665443 345567777777887666544
No 82
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=34.55 E-value=7.1e+02 Score=27.98 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 002453 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSC 849 (920)
Q Consensus 797 ~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l~~~e~~~~~~~~~fl~~ 849 (920)
-|++.+..++...|..-+. .....+|.....++..++..++..|+.||.+
T Consensus 274 ~FL~el~~il~~~~~~~f~---~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQ---KIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHHHHHHTT--HHHHH---HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 3667777777765544443 3556677777788888999888888888754
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.53 E-value=9.1e+02 Score=29.26 Aligned_cols=176 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHccC
Q 002453 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (920)
Q Consensus 679 ~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~L~l~s~lv~~~~~ 758 (920)
...+-+.|-++.++.. .++-|..++.-|.-+.++...+.+..|+++....+.+. .|+..+.....+.+....
T Consensus 138 EmardlapeVe~Ll~~---~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek-----~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQH---RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEK-----HHGVLIAGLHLITELCKI 209 (866)
T ss_pred HHhHHhhHHHHHHHhC---CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhc-----CCceeeeHHHHHHHHHhc
Q ss_pred CCCCcchhHHHHHHHhhhHHHHHhhccCCCCCCCchHHHHHHHHHHHHhhhhHHHHhc-chhhhHHHHHHHHHhhccCCh
Q 002453 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAA-SGALLEVSFQKAAICCTAMHR 837 (920)
Q Consensus 759 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s-~~~~l~~il~~~l~~l~~~e~ 837 (920)
.++....+..+...|... +..+.+.....+|. +.. +.|+++.-+-..+.-+...+.
T Consensus 210 ~~~~l~~fr~l~~~lV~i--Lk~l~~~~yspeyd---------------------v~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKI--LKQLTNSGYSPEYD---------------------VHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHhcCCCCCccC---------------------ccCCCchHHHHHHHHHHHHhcCCCc
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhccCCcccchhhhH
Q 002453 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSF 906 (920)
Q Consensus 838 ~~~~~~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l~~~~ 906 (920)
++.......|..+.+.+..+ ..-|..++..+++.|..--|-+.+.-++
T Consensus 267 daSd~M~DiLaqvatntdss---------------------kN~GnAILYE~V~TI~~I~~~~~Lrvla 314 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTDSS---------------------KNAGNAILYECVRTIMDIRSNSGLRVLA 314 (866)
T ss_pred cHHHHHHHHHHHHHhccccc---------------------ccchhHHHHHHHHHHHhccCCchHHHHH
No 84
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=34.47 E-value=7.9e+02 Score=28.51 Aligned_cols=139 Identities=16% Similarity=0.091 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcChHH----------HHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhh
Q 002453 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAA----------WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ 75 (920)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~~a----------w~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~ 75 (920)
.+++...+.....++++..|.-+-..|.+.-+.+++ .......|..+ +.+|.--|+.+|+.-.+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~------d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP------DLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC------cHHHHHHHHHHHHHHhC
Confidence 456666677655577888888887778776554433 33445555443 46888889888887665
Q ss_pred cccCCCChhHHHHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhc-----cC-CchHHHHHHHhhhccCCCchhH
Q 002453 76 NEGYYLQSAAKDAL-LNALLVAAKRFSS-GPPQLLTQICLALSALILRAV-----EH-GKPIEKLFYSLQNLQSQDNGNM 147 (920)
Q Consensus 76 ~~w~~l~~e~~~~L-r~~Ll~~l~~~~~-~~~~v~~kL~~~La~l~~~~~-----~W-~~~i~~l~~~l~~~~~~~~~~~ 147 (920)
+. ...+.+ ...++..+..... .+..+|-+....++.++.+.+ .| ...++.++..+.+. +.-...
T Consensus 149 ~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvql 220 (503)
T PF10508_consen 149 HP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD--DILVQL 220 (503)
T ss_pred Cc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHH
Confidence 32 122223 2222444433322 366789999999888876654 13 34677777777652 333344
Q ss_pred HHHHHHhhhhh
Q 002453 148 AVLEMLTVLPE 158 (920)
Q Consensus 148 ~~L~iL~~l~E 158 (920)
..++++..|++
T Consensus 221 nalell~~La~ 231 (503)
T PF10508_consen 221 NALELLSELAE 231 (503)
T ss_pred HHHHHHHHHHc
Confidence 67777777766
No 85
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=34.42 E-value=3.2e+02 Score=26.63 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=39.4
Q ss_pred hHHHHHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh---hhhhhHhhHHHHHHHHH
Q 002453 676 PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS---SGQHFVTLLPQVLDCLS 733 (920)
Q Consensus 676 p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~---~~~~~~~~l~~l~~~l~ 733 (920)
-+++++-++.+-+...+.. .|++|+.++..++++.+++ .|+...|++..++..+.
T Consensus 73 kilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 73 KILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3566676666666666653 6899999999999999665 57777777766665543
No 86
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.27 E-value=64 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.2
Q ss_pred HHHHHHHhccc--CchHHHHHHHHHHHHH
Q 002453 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (920)
Q Consensus 530 vl~~l~~~l~~--~~v~~~Aa~al~~lc~ 556 (920)
+++.|++.+.+ ++++..|+.|+.++|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45666666665 4489999999999873
No 87
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.12 E-value=45 Score=30.96 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHhhhHHHHhchhchHHHHHHHHHhcccCchHHHHHHHH
Q 002453 510 ADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (920)
Q Consensus 510 ~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al 551 (920)
+.++++|..|+.-+.-.-.+.++.+++.+++|.++..|+.+|
T Consensus 107 L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 107 LKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 588898888875433333457888888889999998888764
No 88
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=33.12 E-value=3e+02 Score=29.21 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHhhcCh---HHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCC
Q 002453 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (920)
Q Consensus 6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~s~---~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~ 82 (920)
.+.|.+++..|-.-..........++|....++. ..|.....|+..-- ...--.||- ..-...+. ......
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl----~~v~~e~~~-~~p~~~~~-~~~~~~ 75 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL----EKVIDEFFE-SAPEESGP-QNPNVE 75 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH----HHHHHHHHh-cCccccCC-CCCCcc
Confidence 3567888888776545567788899998888873 45888777775410 001111220 00001111 122344
Q ss_pred hhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002453 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118 (920)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l 118 (920)
...+..++..+..++..|.. +++.+.|||..|..=
T Consensus 76 ~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P 110 (288)
T PF09184_consen 76 PEDYEEMKERILELLDSFDE-PPFTIQRLCELLLDP 110 (288)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhCh
Confidence 56788999999999988875 899999999776543
No 89
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=32.39 E-value=8.7e+02 Score=28.39 Aligned_cols=209 Identities=10% Similarity=0.052 Sum_probs=90.0
Q ss_pred HHHHhhhHHHHhchhchHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCCChhhH
Q 002453 511 DVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDE 588 (920)
Q Consensus 511 ~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~l~~~~l~~~~~ 588 (920)
..|.....+.+.+|+++..+...|.+-|.. +.-..++-.||..+-..-... .+..+...+..-.+. +...|
T Consensus 78 ~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-----tL~~lf~~i~~~~~~--de~~R 150 (556)
T PF05918_consen 78 QAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-----TLTGLFSQIESSKSG--DEQVR 150 (556)
T ss_dssp HHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHH---HS---HHHH
T ss_pred HHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhcccC--chHHH
Confidence 344444555566777777777777776663 223445555565555433321 222222222110011 34467
Q ss_pred HHHHHHHHHHHccCCchHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccC
Q 002453 589 EEVVGAISLILGSVSNKELK-NNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (920)
Q Consensus 589 ~~l~eai~~ii~~~p~~~~~-~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~ 667 (920)
++++.-|..-+-.++.+... ..-++ .-++..+.+++... .+ ...+-+..+++++..=.
T Consensus 151 e~~lkFl~~kl~~l~~~~~~p~~E~e---~~i~~~ikkvL~DV--------Ta----------eEF~l~m~lL~~lk~~~ 209 (556)
T PF05918_consen 151 ERALKFLREKLKPLKPELLTPQKEME---EFIVDEIKKVLQDV--------TA----------EEFELFMSLLKSLKIYG 209 (556)
T ss_dssp HHHHHHHHHHGGGS-TTTS---HHHH---HHHHHHHHHHCTT----------H----------HHHHHHHHHHHTSGG--
T ss_pred HHHHHHHHHHHhhCcHHHhhchHHHH---HHHHHHHHHHHHhc--------cH----------HHHHHHHHHHHhCcccc
Confidence 77777776666555543211 01122 23344555555421 01 11223333344433200
Q ss_pred CCCCCCCchHHHHHHhHHHHHHHHH--Hhhhc-cchHHHHHHHHHHHHHHHhh--hhhhHhhHHHHHHHHHHhhhhhcCc
Q 002453 668 PTNPAGDDPIFALLRVFWPMLEKLF--RSEHM-ENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNH 742 (920)
Q Consensus 668 ~~~~~~~~p~~~~~~~i~~~l~~i~--~~~~~-~~~~v~e~~c~~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~ 742 (920)
...+ ..-.+++..++..-. ...|. .|.+.++++..|+++++..+ +.....|+.-+++.++-.|..- +.
T Consensus 210 -----~~~t-~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l-~e 282 (556)
T PF05918_consen 210 -----GKQT-IEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL-PE 282 (556)
T ss_dssp ------GSS-HHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----
T ss_pred -----ccCC-hHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC-Ch
Confidence 0011 123455667666544 11344 78899999999999987765 3344455555555544334322 12
Q ss_pred chHHHHHHHHHH
Q 002453 743 ECYIRTASVVIE 754 (920)
Q Consensus 743 ~~~L~l~s~lv~ 754 (920)
.-=+.++..+..
T Consensus 283 ~~kl~lLk~lAE 294 (556)
T PF05918_consen 283 DRKLDLLKLLAE 294 (556)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 222455555543
No 90
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=32.01 E-value=4e+02 Score=26.05 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHHHHhhcccCCC--------ccH-------HHHHHHHHHHH---hCCCChhhHHHHHHHHHHHHccC
Q 002453 541 AVSSNACASALRKICEDASALIDEP--------SNL-------EILMWIGEALE---KRHLPLEDEEEVVGAISLILGSV 602 (920)
Q Consensus 541 ~~v~~~Aa~al~~lc~~c~~~l~~~--------~~~-------~~l~~~~~~l~---~~~l~~~~~~~l~eai~~ii~~~ 602 (920)
++++.+|+.++..+-+.++..+..+ .+. ..+.+++..+. ...-.......++++++.++++-
T Consensus 54 ~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 54 PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 3489999999988877766433110 121 22344444432 12224456778999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcc
Q 002453 603 SNKELKNNLLARLLSSSYEAIGKLIDG 629 (920)
Q Consensus 603 p~~~~~~~~l~~ll~p~~~~l~~~~~~ 629 (920)
|.+.... .++.+++..+...+..
T Consensus 134 PY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 134 PYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred ChhhcCH----hHHHHHHHHHHHHHhc
Confidence 9876433 4566666666666654
No 91
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=30.80 E-value=2.3e+02 Score=24.58 Aligned_cols=90 Identities=18% Similarity=0.069 Sum_probs=53.0
Q ss_pred cCCChHHHHHHHHHHHHhhcC-h---------HHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHH
Q 002453 18 HDTESCNRVAANQWLVQFQQT-D---------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (920)
Q Consensus 18 ~~~d~~~~~~A~~~L~~~q~s-~---------~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~ 87 (920)
..+++..|..|-..|..+-.. | ++++....+|..+ +..++..++.+|.+-.... ++...
T Consensus 17 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l~~~~-----~~~~~ 85 (120)
T cd00020 17 SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNLAAGP-----EDNKL 85 (120)
T ss_pred HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHHccCc-----HHHHH
Confidence 345667777777777777654 2 4455666677653 3688888888888776542 12222
Q ss_pred -HHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 002453 88 -ALLNALLVAAKRFS-SGPPQLLTQICLALSAL 118 (920)
Q Consensus 88 -~Lr~~Ll~~l~~~~-~~~~~v~~kL~~~La~l 118 (920)
..+..++..+.+.- .++..++...+.+|..+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22233444443322 23456777777777655
No 92
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=29.44 E-value=1.4e+02 Score=31.82 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHhhhhccccC-CcccchhHHHHHHHHhcc-CchhhhhhHHHHHHHHHHHHHHhhhHHHHhch----hchH
Q 002453 455 KEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSA-SRSEELKGFMHIVYRSLADVIGSYSKWISAFQ----TNAR 528 (920)
Q Consensus 455 ~~~Ea~L~~l~~iae~~~~~-~~~~~l~~i~~~l~~l~~-~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p----~~L~ 528 (920)
.-.|-++|+||.||..-..- +-...-..+-.++..+.+ .++.. -+|- +.|+++.+++ .++| ..+.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~is-----mlRn--~TWtLSNlcR--GknP~P~w~~is 242 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHIS-----MLRN--ATWTLSNLCR--GKNPPPDWSNIS 242 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHH-----HHHH--hHHHHHHhhC--CCCCCCchHHHH
Confidence 45689999999997532210 000000123333333332 22211 1343 3489988876 5555 3677
Q ss_pred HHHHHHHHhcc--cCchHHHHHHHHHHHHH
Q 002453 529 PLLLFLAAGIS--EAVSSNACASALRKICE 556 (920)
Q Consensus 529 ~vl~~l~~~l~--~~~v~~~Aa~al~~lc~ 556 (920)
.+++.|.+-+. ||++-.-|+.|+..+.+
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 88888876654 67888889999988764
No 93
>PRK10236 hypothetical protein; Provisional
Probab=28.46 E-value=1.2e+02 Score=30.70 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHH---Hhhc---ChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhccc
Q 002453 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (920)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~---~~q~---s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w 78 (920)
+++...+..|-++.|-..| ..+-|. .+++ .+.--.--|+.+. .+.|+||+.++.+.++.+.
T Consensus 20 edL~~Lv~~Lt~d~dG~~R--~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~G 86 (237)
T PRK10236 20 EQLANFARLLTHNEKGKTR--LSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGHG 86 (237)
T ss_pred HHHHHHHHHHhcCCCCCEe--ehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcCC
Confidence 5777888887655443222 222232 4444 3222222233442 4899999999999988643
No 94
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.28 E-value=2.5e+02 Score=28.12 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=47.9
Q ss_pred hhcCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHH
Q 002453 16 LNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (920)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~ 87 (920)
+++-+.|..|+-|..++.+.+.. ++-|.++..|++++ .-+.|++|...|..+... +++++..
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~------~~E~r~~al~~l~~~~~~----~~~~~~~ 83 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQP------EREYQYVAIDLLRKYKKF----LTPEDLP 83 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcch------HHHHHHHHHHHHHHHHhc----CCHHHHH
Confidence 66667899999999999988775 67899999999764 258999999888775442 5555533
No 95
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=28.08 E-value=1.4e+03 Score=29.38 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHhhcChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHH
Q 002453 33 VQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK 98 (920)
Q Consensus 33 ~~~q~s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~~l~ 98 (920)
...-+.|.+|.+-.-+... + ...-+|.|--..|+.+|.++ .-|..-++..+--.|+..+.
T Consensus 75 ~~l~~~pn~lPfqk~~~t~-k----AAylvRqyvkhnLyDRlSTR-PFL~~iEKkWiaFQLL~al~ 134 (1431)
T KOG1240|consen 75 FALMKAPNCLPFQKVLVTD-K----AAYLVRQYVKHNLYDRLSTR-PFLVLIEKKWIAFQLLKALS 134 (1431)
T ss_pred HHhhcCCcccchHHHHHhh-H----HHHHHHHHHhhhhhhhhccc-hHHHHHHHHHHHHHHHHHHH
Confidence 3444567777776554432 2 23456777667777777654 11334445555555555554
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.98 E-value=5.6e+02 Score=24.74 Aligned_cols=60 Identities=13% Similarity=0.303 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHHHHhh-hhHHHHhcchhhhHHHHHHHHHhh-c-----cCChhHHHHHHHHHHHHHhh
Q 002453 789 DQEPDLVEAYTNFASTFVRT-SRKEVLAASGALLEVSFQKAAICC-T-----AMHRGAALAAMSYLSCFLEE 853 (920)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~-~p~~~~~s~~~~l~~il~~~l~~l-~-----~~e~~~~~~~~~fl~~li~~ 853 (920)
+++|++.+..-.++..+..+ .|..+.+. +..++.. +... . ..+++-.+...+|+..+++.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~----~~e~i~~-l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNN----FPELISS-LNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHH-HhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 67899999999999999988 78777642 3332221 1111 1 24455577888888887763
No 97
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.62 E-value=1.5e+03 Score=29.78 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHHhh
Q 002453 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDAS 559 (920)
Q Consensus 504 l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~c~ 559 (920)
||-++ .+++|+| +-.+|++.......+.+++.|+. |+.+|-+-++.+|++-.
T Consensus 871 VREAa-ldLvGrf---vl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 871 VREAA-LDLVGRF---VLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHH-HHHHhhh---hhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 67755 5999987 57899999999999999999987 78999998888887644
No 98
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.42 E-value=1.7e+03 Score=29.48 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=68.0
Q ss_pred cCchHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHH
Q 002453 431 LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA 510 (920)
Q Consensus 431 l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~ 510 (920)
+|.+..+....+-. +.+..|...-.+-|.+++|++.-.+... |.+.++++.+-....+.. +.|+.+..
T Consensus 952 l~qPdLVYKFM~LA----nh~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~---~~Vq~aM~- 1019 (1702)
T KOG0915|consen 952 LGQPDLVYKFMQLA----NHNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPD---KKVQDAMT- 1019 (1702)
T ss_pred cCChHHHHHHHHHh----hhhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCc---HHHHHHHH-
Confidence 45544444443332 2346799999999999999876543332 666677776643221111 11333221
Q ss_pred HHHHhhhHHHHh----chhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 002453 511 DVIGSYSKWISA----FQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (920)
Q Consensus 511 ~~ig~y~~~l~~----~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~ 557 (920)
.+-+.. +.. -.+|+..++.-|+.++.+.+ |+.++|.|+..+.+.
T Consensus 1020 sIW~~L---i~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1020 SIWNAL---ITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred HHHHHh---ccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 111111 111 12588889999999998876 999999999999876
No 99
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=25.25 E-value=3.2e+02 Score=23.92 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHH
Q 002453 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLST 734 (920)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~~~~-~~~~~l~~l~~~l~~ 734 (920)
..-|++-.+...+ ..+++.+.+++++...++.++. +..|+++.++-.+..
T Consensus 53 ~~pQI~a~L~sal-----~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 53 ARPQIMACLQSAL-----EIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHh-----CChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 3344444444444 3458999999999999999865 567777776665554
No 100
>PTZ00429 beta-adaptin; Provisional
Probab=25.08 E-value=1.3e+03 Score=28.19 Aligned_cols=126 Identities=12% Similarity=0.090 Sum_probs=76.3
Q ss_pred cCCChHHHHHHHHHHHHhhc-ChH-HHHHHHHhhccCCCCCCchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Q 002453 18 HDTESCNRVAANQWLVQFQQ-TDA-AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLV 95 (920)
Q Consensus 18 ~~~d~~~~~~A~~~L~~~q~-s~~-aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~~ki~~~w~~l~~e~~~~Lr~~Ll~ 95 (920)
.++|.+.|+-.--||...-+ .|+ +--.+..+...-. +.++.+|=.|..||-. |+ .++..+.+-..+..
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~---d~Np~IRaLALRtLs~-Ir------~~~i~e~l~~~lkk 147 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTT---NSSPVVRALAVRTMMC-IR------VSSVLEYTLEPLRR 147 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHc-CC------cHHHHHHHHHHHHH
Confidence 45688889999999988877 566 5555555554333 3467788888777743 22 12333333333333
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHhhhccCCCchhHHHHHHHhhhhh
Q 002453 96 AAKRFSSGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPE 158 (920)
Q Consensus 96 ~l~~~~~~~~~v~~kL~~~La~l~~~~~~---W~~~i~~l~~~l~~~~~~~~~~~~~L~iL~~l~E 158 (920)
.+. ..++.||++-+.++..++-..+. =.++++.+...+.. .++......+..|..+.+
T Consensus 148 ~L~---D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D--~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 148 AVA---DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLND--NNPVVASNAAAIVCEVND 208 (746)
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcC--CCccHHHHHHHHHHHHHH
Confidence 332 45689999999999998655442 23456666666654 244444555555555544
No 101
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.53 E-value=6.5e+02 Score=27.25 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHHhh----c-----cCC--------hhHHHHHHHHHHHHHh
Q 002453 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC----T-----AMH--------RGAALAAMSYLSCFLE 852 (920)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~il~~~l~~l----~-----~~e--------~~~~~~~~~fl~~li~ 852 (920)
..+.++...++|+..++.......... ++. -|++...++ . ... +..=....+||..|+.
T Consensus 68 ~~~~~~~~~LrLL~~iv~f~~g~~a~~---v~~-~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~ 143 (330)
T PF11707_consen 68 SKPSLTNPALRLLTAIVSFDGGALARE---VLR-SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLS 143 (330)
T ss_pred CcHHHHHHHHHHHHHHHccCCHHHHHH---HHH-hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHc
Confidence 337788899999999998544333221 111 111111111 1 011 1444567899999997
Q ss_pred hhhhhccCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhccCCcccchhhhHHHHHHH
Q 002453 853 ECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVNTSFNLKYAI 912 (920)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~~rs~l~~~~e~l~~l 912 (920)
.+.. ....+++.+++- +..+++++.. =|.+.+..+=+.|+.-
T Consensus 144 ~~~~---------------~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~~ 185 (330)
T PF11707_consen 144 SGDP---------------ELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKDK 185 (330)
T ss_pred cCCH---------------HHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHHH
Confidence 6422 445677776665 8888888885 5555555555555543
No 102
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=24.23 E-value=3.3e+02 Score=25.52 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=34.4
Q ss_pred HhchhchHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhcccC
Q 002453 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALID 563 (920)
Q Consensus 521 ~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~al~~lc~~c~~~l~ 563 (920)
.++...|.++|.|+.+.+.+|+.......+...+.+-+...+.
T Consensus 70 ~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~~~~~ 112 (148)
T PF09384_consen 70 GRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYSPVIG 112 (148)
T ss_pred hCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999777777777777776766654
No 103
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=23.04 E-value=1.2e+03 Score=27.04 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhhc-ChHHHHHHHHhhccCCCCCCchhhHHHHHHHHHH
Q 002453 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQ-TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILK 71 (920)
Q Consensus 7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~~q~-s~~aw~~~~~lL~~~~~~~~~~~~v~ffaa~tL~ 71 (920)
+++.++++.|...+....|=.|-..|+++.. .|+-...|..=+.+=-+ ..+..+-.||..||-
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtLL 365 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTLL 365 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHHH
Confidence 4555666666666666677777777777643 56655554322211000 123456677766663
No 104
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.44 E-value=6.8e+02 Score=30.20 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHhc-Cc-hHHHHHHHhhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCccc-chhHHHHHHH
Q 002453 412 GLVQFRMNLVELLVDICQLL-RS-ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAF-DFSVIMQLVA 488 (920)
Q Consensus 412 ~f~~~R~~~~d~l~~~~~il-~~-~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~-~l~~i~~~l~ 488 (920)
.+.+|.+.+.|++.++..-. .. +.-+.++...+. +.+-.+-+.+.++-++...+...++. ++..+..-
T Consensus 404 Gg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIE-------Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR-- 474 (865)
T KOG1078|consen 404 GGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIE-------DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR-- 474 (865)
T ss_pred cCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH-------hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhh--
Confidence 34566777777777766532 22 124444444332 12334556677777766555322221 11122221
Q ss_pred HhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccCc--hHHHHHHHHHHHHH
Q 002453 489 VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICE 556 (920)
Q Consensus 489 ~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~ 556 (920)
.+.+... +|+.+. .++.+ |....+...+++...+-+++.|++ ++.+|.-++..+-+
T Consensus 475 viLEn~i--------vRaaAv-~alaK---fg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 475 VILENAI--------VRAAAV-SALAK---FGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhh--------hHHHHH-HHHHH---HhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1222322 565332 44444 447788889999999999999865 89999988887763
No 105
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=1.6e+03 Score=28.28 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHh--h---hccchHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHH
Q 002453 680 LLRVFWPMLEKLFRS--E---HMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLST 734 (920)
Q Consensus 680 ~~~~i~~~l~~i~~~--~---~~~~~~v~e~~c~~~~~~~~~~~~-~~~~~l~~l~~~l~~ 734 (920)
.+..+.|+|...+.. + ......|.+++|-++....|+..+ ++.|++..+...++.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~ 477 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLI 477 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHH
Confidence 345566777766532 1 224557899999999999999866 467777766666654
No 106
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.36 E-value=1.7e+03 Score=28.33 Aligned_cols=231 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHhCCh-hHHHHHHHHHhhcCCCCC-------CcchhhccHHHHHHHHH-Hhhccchhhhhhhhhhhhh
Q 002453 308 MSEIGQAAPSLIVEASP-EALALADALLSCVAFPSE-------DWEIADSTLQFWSTLAS-YILGLDASIAKNKKHVEDM 378 (920)
Q Consensus 308 ~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~-------d~~v~~~~~~FW~~l~e-~l~~~~~~~~~~~~~~~~~ 378 (920)
..+++..|...-.++.. ..+.++++++.|+|..|. +-+.+++++.--..+.+ + ..++........+..
T Consensus 94 i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~e---s~DYpl~~~g~~~k~ 170 (1048)
T KOG2011|consen 94 IEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERE---SGDYPLTSKGPEWKN 170 (1048)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhh---hccCcCCCCCHHHHH
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCchHHHHHHHHHH----HHHHHHHhcCch--HHHHHHHhhhhcCCCCCC
Q 002453 379 FFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVE----LLVDICQLLRSA--TFIQKVFFGSWGSANVPI 452 (920)
Q Consensus 379 ~~~~~~~l~~~l~~k~~~p~~~~~~~~~~d~~~~f~~~R~~~~d----~l~~~~~il~~~--~~l~~~~~~~~~~~~~~~ 452 (920)
|+..|..++..++.+++|..-..++ ---|++..+=..+.| .++.+..+.... .++..+...+.. .....
T Consensus 171 fr~~~~~fl~~lV~q~q~~s~l~d~----~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~-~~~~t 245 (1048)
T KOG2011|consen 171 FRENFCEFLPTLVSQCQYGSCLFDS----FLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSS-HNDKT 245 (1048)
T ss_pred HHHHHHHHHHHHHHHhccCCccccc----hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHH
Q ss_pred Cch-------------hhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHH
Q 002453 453 PWK-------------EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKW 519 (920)
Q Consensus 453 ~W~-------------~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~ 519 (920)
+=| ++|+.+--..-..+...+-+ ..|-.++..+.-|.. +... +.+| +.++...+.|
T Consensus 246 skQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~-----~mi~~if~sVFVHRY-RDV~-~~IR----aiCiqeLgiW 314 (1048)
T KOG2011|consen 246 SKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIE-----SMINDIFDSVFVHRY-RDVD-PDIR----AICIQELGIW 314 (1048)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhheeeeec-ccCc-hHHH----HHHHHHHHHH
Q ss_pred HHhchhch--HHHHHHHHHhcccCc--hHHHHHHHHHHHHHH
Q 002453 520 ISAFQTNA--RPLLLFLAAGISEAV--SSNACASALRKICED 557 (920)
Q Consensus 520 l~~~p~~L--~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~ 557 (920)
+..-|+++ ..-|.|+=-.|+|.. |+..+-+|+.+|-+.
T Consensus 315 i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 315 IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
No 107
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.02 E-value=3.3e+02 Score=28.15 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=50.9
Q ss_pred hhhHHHHHHHhhhhccccCCcccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhhHHHHhchhchHHHHHHHH
Q 002453 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLA 535 (920)
Q Consensus 456 ~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~ 535 (920)
+.+.++|.++.++.. ..|..++..+...+. ..|- .+.+++|+.- +|..++.....+.
T Consensus 172 ~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Sa-------lfrh-EvAfVfGQl~-----s~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGTE----------EAINALIDGLADDSA-------LFRH-EVAFVFGQLQ-----SPAAIPSLIKVLL 228 (289)
T ss_pred HHHhhhhHhhccCcH----------HHHHHHHHhcccchH-------HHHH-HHHHHHhhcc-----chhhhHHHHHHHH
Confidence 345788888766321 234445555443322 1233 3348889864 5665555555555
Q ss_pred HhcccCchHHHHHHHHHHHH-HHhhccc
Q 002453 536 AGISEAVSSNACASALRKIC-EDASALI 562 (920)
Q Consensus 536 ~~l~~~~v~~~Aa~al~~lc-~~c~~~l 562 (920)
..-.+|-|+..|+.||..+. ++|...|
T Consensus 229 d~~E~pMVRhEaAeALGaIa~e~~~~vL 256 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIADEDCVEVL 256 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcCHHHHHHH
Confidence 55556779999999999998 4466544
No 108
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=21.87 E-value=8.6e+02 Score=26.13 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHccCCchHHHHHHHH--HHHH
Q 002453 543 SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLA--RLLS 617 (920)
Q Consensus 543 v~~~Aa~al~~lc~~c~~~---l~~~~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~ii~~~p~~~~~~~~l~--~ll~ 617 (920)
++-.|+.|+.+++.....+ .+.....|-|.++.. .-+.+.++..+=++|.|..-.+.-. .++- ..++
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~-----s~~~~V~eQavWALGNiAGDS~~~R---D~vL~~gale 202 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS-----STEDDVREQAVWALGNIAGDSEGCR---DYVLQCGALE 202 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc-----CchHHHHHHHHHHhccccCCchhHH---HHHHhcCchH
Confidence 4557899999998765432 222235666766643 2246778999999999976544322 2221 2344
Q ss_pred HHHHHHHhhhccCCCCCCCCCchhhHHHHHhhHHHHHhhhcccccccccCCCCCCCCchHHHHHHhHHHHHHHHHHhhhc
Q 002453 618 SSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM 697 (920)
Q Consensus 618 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~ 697 (920)
|++.-+. +. .. -++.+......++.+.... .+.|--..+.+.+|++..+. |.
T Consensus 203 plL~ll~----ss-----~~-----------~ismlRn~TWtLSNlcRGk-----nP~P~w~~isqalpiL~KLi---ys 254 (526)
T COG5064 203 PLLGLLL----SS-----AI-----------HISMLRNATWTLSNLCRGK-----NPPPDWSNISQALPILAKLI---YS 254 (526)
T ss_pred HHHHHHH----hc-----cc-----------hHHHHHHhHHHHHHhhCCC-----CCCCchHHHHHHHHHHHHHH---hh
Confidence 5544333 11 10 0122333332233322110 12344457788899998875 55
Q ss_pred cchHHHHHHHHHHHHHHH
Q 002453 698 ENGNLSTAACRALSLAIQ 715 (920)
Q Consensus 698 ~~~~v~e~~c~~~~~~~~ 715 (920)
.|++++--+|=.+.....
T Consensus 255 ~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 255 RDPEVLVDACWAISYLSD 272 (526)
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 788888766766665533
No 109
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=21.62 E-value=7.6e+02 Score=24.11 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=53.2
Q ss_pred hchhch--HHHHHHHHHhcccCc--hHHHHHHHHHHHHHH-hhcccCCCccHHHHHHHH-HHHHhCCCChhhHHHHHHHH
Q 002453 522 AFQTNA--RPLLLFLAAGISEAV--SSNACASALRKICED-ASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAI 595 (920)
Q Consensus 522 ~~p~~L--~~vl~~l~~~l~~~~--v~~~Aa~al~~lc~~-c~~~l~~~~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai 595 (920)
..|+-| .+.|+.++.|+...+ .+--|..++..+.+. ....+. +.+|++..-. .++. .-+.+.....++++
T Consensus 29 ~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil--PvlPqLI~plk~AL~--tr~~~V~~~~L~~L 104 (183)
T PF10274_consen 29 VDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL--PVLPQLIIPLKRALN--TRDPEVFCATLKAL 104 (183)
T ss_pred cChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 345543 578889999998643 677788888888888 444443 2555554433 3333 22566677777777
Q ss_pred HHHHccCCc-hHHHHHHHHHHH
Q 002453 596 SLILGSVSN-KELKNNLLARLL 616 (920)
Q Consensus 596 ~~ii~~~p~-~~~~~~~l~~ll 616 (920)
-.++...+. .++...++.+++
T Consensus 105 q~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 105 QQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH
Confidence 766433221 123445555554
No 110
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=1.5e+03 Score=27.56 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhHHHHhchhchHHHHHHHHHhcccC-c--hHHHHHHHHHHHHHHhh---cccCCCccHHHHHHHHHH
Q 002453 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA-V--SSNACASALRKICEDAS---ALIDEPSNLEILMWIGEA 577 (920)
Q Consensus 504 l~~~t~~~~ig~y~~~l~~~p~~L~~vl~~l~~~l~~~-~--v~~~Aa~al~~lc~~c~---~~l~~~~~~~~l~~~~~~ 577 (920)
+|.+.+ +++|+... .+.--+.-+.+...+++-+.+. + |+-+++.+++-..++-- .... | +++.+....-.
T Consensus 503 iRRRVa-~ilg~Wvs-vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl-p-~lenlf~~lfk 578 (978)
T KOG1993|consen 503 IRRRVA-WILGQWVS-VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL-P-YLENLFVLLFK 578 (978)
T ss_pred HHHHHH-HHHhhhhh-eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh-h-hHHHHHHHHHH
Confidence 566665 88886544 1122234455566666666654 2 78899999998887743 2221 1 33443333322
Q ss_pred HHhCCCChhhHHHHHHHHHHHHccCC
Q 002453 578 LEKRHLPLEDEEEVVGAISLILGSVS 603 (920)
Q Consensus 578 l~~~~l~~~~~~~l~eai~~ii~~~p 603 (920)
+-...-..+.+..+..-++.+|..+.
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22222257789999999999987543
No 111
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.01 E-value=6.8e+02 Score=23.31 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhccc
Q 002453 527 ARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (920)
Q Consensus 527 L~~vl~~l~~~l~~--~~v~~~Aa~al~~lc~~c~~~l 562 (920)
=..++..|-+.+.+ |.++..|-..+..+.+.|+..+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 34455555555654 5588888888888888898755
Done!