Query 002454
Match_columns 920
No_of_seqs 455 out of 3860
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 16:13:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002454.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1178-1181//hhsearch_pdb/002454hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 1.0 1 1 825.3 59.4 753 33-850 1-814 (823)
2 4f11_A Gamma-aminobutyric acid 1.0 1 1 382.1 33.4 372 31-446 11-426 (433)
3 3o21_A Glutamate receptor 3; p 1.0 1 1 371.4 37.9 353 32-410 3-380 (389)
4 3hsy_A Glutamate receptor 2; l 1.0 1 1 365.6 33.5 353 33-410 1-374 (376)
5 3om0_A Glutamate receptor, ion 1.0 1 1 363.8 33.1 358 33-411 3-382 (393)
6 3saj_A Glutamate receptor 1; r 1.0 1 1 360.2 33.6 351 30-410 6-377 (384)
7 1jdp_A NPR-C, atrial natriuret 1.0 1 1 354.2 37.5 375 31-439 6-414 (441)
8 1dp4_A Atrial natriuretic pept 1.0 1 1 354.1 32.4 378 33-445 1-419 (435)
9 3h6g_A Glutamate receptor, ion 1.0 1 1 352.3 35.4 359 32-411 2-384 (395)
10 2e4u_A Metabotropic glutamate 1.0 1 1 351.4 39.7 376 31-444 11-482 (555)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=825.28 Aligned_cols=753 Identities=19% Similarity=0.325 Sum_probs=627.5
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 618999997179836477999999999977427999549999824899-9899999999876308849999388637799
Q 002454 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEETA 111 (920)
Q Consensus 33 ~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-d~~~a~~~a~~li~~~~v~aiiGp~~s~~~~ 111 (920)
++|+||+++|+++ .....|+++|++++|+++ ++|++++.|+++ ++..+.+++|+++. ++|.|||||.+|..+.
T Consensus 1 ~~ikIG~l~~~tg---~~~~~a~~lAveeiN~~~--~~l~~~~~D~~~~~~~~a~~~~~~l~~-~~V~aiiG~~~S~~~~ 74 (823)
T 3kg2_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTSE--FRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVN 74 (823)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCSS--CEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTTTHH
T ss_pred CCCEEEEEECCCC---HHHHHHHHHHHHHHHCCC--EEEEEEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCCHHHHH
T ss_conf 9524999957998---699999999999985497--389878987588882888999999875-5928999689765799
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 99983055885299411799998766889861688026826779999999987399399999981898887534999999
Q 002454 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (920)
Q Consensus 112 ~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (920)
+++++++.+++|+|+++.+ . ...++|+||+.|+ ++.++++++++++|++|++|| |+++| .+.++.+.+
T Consensus 75 a~~~i~~~~~iP~is~~~~----~--~~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g--~~~~~~~~~ 142 (823)
T 3kg2_A 75 TITSFCGTLHVSFITPSFP----T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLD 142 (823)
T ss_dssp HHHHHHHHTTCEEEECSCC----C--SSCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGC--THHHHHHHH
T ss_pred HHHHHHHCCCCCEEECCCC----C--CCCCCEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHH--HHHHHHHHH
T ss_conf 9999862278863512367----7--7777618996787---899999999977997899999-67723--789999998
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 98635991586976339998889985789999985102884499998069768999999999859988883999825321
Q 002454 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (920)
Q Consensus 192 ~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (920)
++++.| ++|+....++.... ....|+..++.+++++++|+|++ .++...+..++++++++|+.++.|+|+.++.+.
T Consensus 143 ~~~~~g-~~v~~~~~~~~~~~--~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 218 (823)
T 3kg2_A 143 SAAEKK-WQVTAINVGNINND--KKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGF 218 (823)
T ss_dssp HHHHTT-CEEEEEECSSCCSS--STTTTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBS
T ss_pred HHHCCC-CCEEEEEEECCCCC--CCCHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 754369-70599982037877--66156899999987358739999-887789999999999728678980899951654
Q ss_pred CCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 134457700002353389987301699901689999999842236999888887502464731999999999861148--
Q 002454 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN-- 349 (920)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~-- 349 (920)
...+.. .......+++++..+.+. ++.+++|.++|++++..+++......++.+++.+|||++++++|+++++..
T Consensus 219 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~ 295 (823)
T 3kg2_A 219 TDGDLL--KIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 295 (823)
T ss_dssp SSSCCS--SSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHH--HHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 556557--762578783476423487-42799999999861432357777655441468999899999999999986166
Q ss_pred ------------------CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf ------------------99848999998808202331208972897667770999944598058998745999985346
Q 002454 350 ------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTS 411 (920)
Q Consensus 350 ------------------~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g~~~~~ 411 (920)
..+++.+.++|++++|+|++|+++||++|++....+.|+++.++++++||.|++..|+....
T Consensus 296 ~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~ 375 (823)
T 3kg2_A 296 EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTE 375 (823)
T ss_dssp CCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEECC
T ss_conf 53368999886678887666457899999735657766676789998665417999997278874578770798811214
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 78865666666433578883113999878899942138999890997206776432599614999998899974111244
Q 002454 412 SKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFS 491 (920)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~i~Wpg~~~~~~p~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~ 491 (920)
. . . ...++++++|++... +||++.+.+.+ ..+++.++.||+
T Consensus 376 ~------------------------~-~--------~~~~~~~l~v~~~~~---~P~~~~~~~~~---~~~~~~~~~G~~ 416 (823)
T 3kg2_A 376 D------------------------D-T--------SGLEQKTVVVTTILE---SPYVMMKANHA---ALAGNERYEGYC 416 (823)
T ss_dssp C------------------------C-C--------SSCCCCCEEEEECCC---TTTSEECTTGG---GCCGGGGEESHH
T ss_pred C------------------------C-C--------CCCCCCEEEEEEECC---CCCEEEECCCC---CCCCCCCEEEEH
T ss_conf 7------------------------6-6--------565797899999147---88489953744---567898668887
Q ss_pred HHHHHHHHHHCCCCCCEEEEE---------CCCCHHHHHHHHHCCCCCEEEECEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 899999999789921169970---------69986689998880924199821666337003456243321343799995
Q 002454 492 IELFRLVVDHLNYDLPYEFVP---------HDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVP 562 (920)
Q Consensus 492 ~dl~~~ia~~ln~~~~~~~~~---------~~g~~~~~~~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~iv~ 562 (920)
+|+++++++++|+++++...+ .||+|++++++|.+|++|++++++++|++|.+.++||.||+..++++++|
T Consensus 417 ~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~ 496 (823)
T 3kg2_A 417 VDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIK 496 (823)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEECCHHHEEEEEECCCHHHCCEEEEEE
T ss_conf 99999999973985799982688656657888853557876450457678523230320100489630046577799998
Q ss_pred CCCCC-C-CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------------CCCHHHHHHHHHHHHHHH
Q ss_conf 68998-8-4054146747489999999999999986530355966768--------------632013358999999985
Q 002454 563 AKQEE-S-TWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG--------------TLKDQISNILWFAFSTIF 626 (920)
Q Consensus 563 ~~~~~-~-~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~ 626 (920)
++... + +|.|++||++.+|++++++++++++++|+++|.++.++.. ....++.+++|+++++++
T Consensus 497 ~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 576 (823)
T 3kg2_A 497 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFM 576 (823)
T ss_dssp CCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSC
T ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77766665007646785648999999999999999999856835306765444555565333443227777999999997
Q ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH-CCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 04766-43333013678888899999888741012101664025899888688661-99623102656999999986088
Q 002454 627 FSHRA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS-GNLKVGCVDDSFVKKYLEEVLGF 704 (920)
Q Consensus 627 ~~~~~-~~~s~~~Ri~~~~w~~~~lil~~~Y~a~L~s~Lt~~~~~~~i~s~~dL~~-s~~~i~~~~~~~~~~~l~~~~~~ 704 (920)
+|+.. .|++.+.|+++++||++++|++++|+|+|+|+||.+++.++|++++||.+ +++++++..++....++.+....
T Consensus 577 ~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~ 656 (823)
T 3kg2_A 577 QQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIA 656 (823)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCH
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHCCCH
T ss_conf 43888688652240699999999999999999988877203465789889899802887158998688289998861123
Q ss_pred C----------CCCEEECCCCHHHHHHHHH-CCCEEEEEEECHHHHHHHHHC-CCCEEEEEEEEECCEEEEECCCCCCHH
Q ss_conf 8----------8860335899788999986-397049995020278998623-785688534652342668617993049
Q 002454 705 R----------SGNIVPFGNTEANYIQKFE-NNTIDSLFLERPYEKVFLDKY-CKKYTAINTYRFGGLGFAFQRGSPIAL 772 (920)
Q Consensus 705 ~----------~~~~~~~~~~~~~~~~~l~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~s~~~~ 772 (920)
. ......+.+ ..++++++. .++.+|++.+.+...|+.++. |++..+.+.+...++++++||+|||++
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~ 735 (823)
T 3kg2_A 657 VFDKMWTYMRSAEPSVFVRT-TAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGT 735 (823)
T ss_dssp HHHHHHHHHHHCSSCCCBSS-HHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHH
T ss_pred HHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCHHHH
T ss_conf 79999999985698643477-89999998625885699903678999985489854881552345633676259985899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999996310361889999984999999976668-8897631255305999999999999999999999984025321
Q 002454 773 DISRAILDLSEDGRLKTLEEEWFKPSSECSADERY-STRPENLTLHSFWGLYIVYGATSIFCFLLFVIRLLNNSWSHQE 850 (920)
Q Consensus 773 ~~n~~i~~l~e~G~~~~~~~~~~~~~~~c~~~~~~-~~~~~~L~l~~l~~~f~i~~~g~~ls~~vf~~E~~~~~~~~~~ 850 (920)
.||.+|++++|+|++++|.++|+.....|...... ..+..+|++++|.|+|+++++|+++|+++|++|++|+++++++
T Consensus 736 ~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 736 PVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999999998679399999865768998888876655667753525614089999989999999999999997220664
No 2
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=1.00 E-value=1 Score=382.08 Aligned_cols=372 Identities=19% Similarity=0.267 Sum_probs=314.8
Q ss_pred CCCCEEEEEEEECCC-----CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf 776189999971798-----364779999999999774279--99549999824899989999999987630-8849999
Q 002454 31 IEEVTKIGAIVDANS-----QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIA 102 (920)
Q Consensus 31 ~~~~i~IG~i~p~s~-----~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~d~~~a~~~a~~li~~-~~v~aii 102 (920)
+.++|+||+++|+++ ..|.....|+++|++++|+.+ +|++|++++.|++++|..++.++++|+.+ ++|.+||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~avi 90 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVF 90 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99846999999706887777541639999999999985047999977889995488987899999999986499669998
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC
Q ss_conf 38863779999983055885299411799998766889861688026826779999999987399399999981898887
Q 002454 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (920)
Q Consensus 103 Gp~~s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~ 182 (920)
||.+|..+.+++++++.+++|+|+++++++ .+..+..+|++||+.|++..++.++++++++++|++|++||++++||
T Consensus 91 G~~~S~~~~a~~~~~~~~~ip~is~~~~~~-~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g-- 167 (433)
T 4f11_A 91 GGVCPSVTSIIAESLQGWNLVQLSFAATTP-VLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF-- 167 (433)
T ss_dssp ECCSHHHHHHHHHTHHHHTCEEEESSCCCG-GGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHH--
T ss_conf 997435899999988756935997156883-44464348866993586677899999999984993899999656146--
Q ss_pred CCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 53499999998635991586976339998889985789999985102884499998069768999999999859988883
Q 002454 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (920)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~ 262 (920)
....+.+++.+++.| ++|+....++. |+..++.+++++++|+|++ ++....+..++++++++|+.++++
T Consensus 168 ~~~~~~~~~~~~~~g-~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~ 236 (433)
T 4f11_A 168 SEVRNDLTGVLYGED-IEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSKY 236 (433)
T ss_dssp HHHHHHHHHHSSSSS-CEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHTTCCSTTC
T ss_pred HHHHHHHHHHHHHCC-CEEEEEECCCC---------CHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 789999999998769-65999862683---------7899999986279819999-675799999999999849878976
Q ss_pred EEEEECCCCCCCC-----------CCCHHHHCCCCEEEEEEEECCCC-------CCHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 9998253211344-----------57700002353389987301699-------90168999999984-22369998888
Q 002454 263 VWIVTNTVANALD-----------SLNTTVISSMEGTLGIKSYYSDD-------SSPYKEFSALFRRN-FTSEYPEEDHF 323 (920)
Q Consensus 263 ~~i~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~f~~~~~~~-~~~~~~~~~~~ 323 (920)
+||+++....... .........++|++++..+.+.. ++..++|.++|.++ + +.
T Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~--------~~ 308 (433)
T 4f11_A 237 QWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS--------GV 308 (433)
T ss_dssp EEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT--------TS
T ss_pred EEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC--------CC
T ss_conf 9998672157674044667888897889999997177888886337788755577888999999987437--------88
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEE
Q ss_conf 875024647319999999998611489-----------------984899999880820233120897289766777099
Q 002454 324 HPSIHALRAHDSIKIITEAIGRLNYNI-----------------SSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386 (920)
Q Consensus 324 ~~~~~a~~~YDav~~~a~Al~~~~~~~-----------------~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~ 386 (920)
.|+.+++.+|||++++++|+++++.+. .+++.+.++|++++|+|++|+++| ++|++ ...+.
T Consensus 309 ~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~-~~~~~ 386 (433)
T 4f11_A 309 GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGER-MGTIK 386 (433)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEE-ECEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCEEEEE-ECCCE-EEEEE
T ss_conf 76630356899999999999999999740587775346535518999999999974689703058999-56954-10689
Q ss_pred EEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 994459805899874599998534678865666666433578883113999878899942
Q 002454 387 IVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGW 446 (920)
Q Consensus 387 i~~~~~~~~~~vg~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~Wpg~~~~~~p~~~ 446 (920)
|++++++++++||.|++..+. +. . ....|+|||+ .+|+..
T Consensus 387 I~~~~~g~~~~VG~~~~~~~~---l~-------------~-~~~~i~W~~~---~~P~D~ 426 (433)
T 4f11_A 387 FTQFQDSREVKVGEYNAVADT---LE-------------I-INDTIRFQGS---EPPKDD 426 (433)
T ss_dssp EEEEETTEEEEEEEEETTTTE---EE-------------E-CTTTCCCSSS---SCCCSS
T ss_pred EEEEECCCEEEEEEEECCCCE---EE-------------E-ECCCEECCCC---CCCCCC
T ss_conf 999778916899999778886---89-------------7-2772188898---879886
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=1.00 E-value=1 Score=371.39 Aligned_cols=353 Identities=16% Similarity=0.244 Sum_probs=300.3
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC----CCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 76189999971798364779999999999774279----99549999824899-98999999998763088499993886
Q 002454 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMET 106 (920)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~----~g~~i~l~~~D~~~-d~~~a~~~a~~li~~~~v~aiiGp~~ 106 (920)
+++|+||+++|+++ .....|+++|++++|+++ +|++|++++.|+++ ||..+++++++|+.+ +|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg---~~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTC---HHHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECCC
T ss_pred CCEEEEEEEECCCC---HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEEECCC
T ss_conf 85248999947998---7799999999999714764567771799998764789848999999988730-8099991797
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHH
Q ss_conf 37799999830558852994117999987668898616880268267799999999873993999999818988875349
Q 002454 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (920)
Q Consensus 107 s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (920)
|..+.+++++++.++||+|+++.+ . .+ ..+|.|++.|+ ++.++++++++++|++|++|| |++|| ...+
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~~---~-~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~ 146 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSFP---T-DA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERG--FSVL 146 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSCC---C-SS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTC--SHHH
T ss_pred HHHHHHHHHHHCCCCCCEEECCCC---C-CC--CCCEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-CCCHH--HHHH
T ss_conf 038999999855478964604778---7-66--77607997468---899999999967997799998-38077--8999
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999986359915869763399988899857899999851028844999980697689999999998599888839998
Q 002454 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (920)
Q Consensus 187 ~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (920)
+.+.+.+++.| ++|+....++.. ...|+..++.+++++++|+|++ .++...+..++++++++|+.++.|+||+
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~-----~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~ 219 (389)
T 3o21_A 147 QAIMEAAVQNN-WQVTARSVGNIK-----DVQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYML 219 (389)
T ss_dssp HHHHHHHHHTT-CEEEEEECTTCC-----CTHHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHCSCSTTCEEEE
T ss_pred HHHHHHHHCCC-CEEEEEEECCCC-----CCHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999763179-769999714778-----7077999999997289759999-8788999999999997284668759998
Q ss_pred ECCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 25321134457700002353389987301699901689999999842236999888887502464731999999999861
Q 002454 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (920)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (920)
++.|....+.. .......+++++..+.+ ++|.+++|.++|+++|..+++......++.+++++|||++++++|++++
T Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 296 (389)
T 3o21_A 220 ANLGFTDILLE--RVMHGGANITGFQIVNN-ENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296 (389)
T ss_dssp CCTTGGGCCCH--HHHHTTCEEEEEESCCT-TCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHH--HHHCCCCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 16871403278--87467851489997469-9756999999997525323588887753306889999999999999999
Q ss_pred CC-------------C-------CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCC
Q ss_conf 14-------------8-------998489999988082023312089728976677709999445980589987459999
Q 002454 347 NY-------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (920)
Q Consensus 347 ~~-------------~-------~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g 406 (920)
+. + ..++..++++|++++|+|++|+++||++|++....+.|+++.++++++||+|++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 297 RRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp HHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 86172201588887678999988787489999997176666614235489997336468999974888615469868988
Q ss_pred CCCC
Q ss_conf 8534
Q 002454 407 FSKT 410 (920)
Q Consensus 407 ~~~~ 410 (920)
+++.
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred CCCC
T ss_conf 4406
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=1.00 E-value=1 Score=365.63 Aligned_cols=353 Identities=17% Similarity=0.258 Sum_probs=295.8
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Q ss_conf 61899999717983647799999999997742799954999982489-99899999999876308849999388637799
Q 002454 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (920)
Q Consensus 33 ~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~-~d~~~a~~~a~~li~~~~v~aiiGp~~s~~~~ 111 (920)
.+|+||+++|++ |.....|+++|++++|+. |++|++++.|+. +||..+.+++|+|+.+ +|.+||||.+|..+.
T Consensus 1 ~~i~IG~i~~~s---g~~~~~~~~lAv~~iN~~--g~~l~~~~~d~~~~d~~~a~~~~~~li~~-~V~aiiG~~~S~~~~ 74 (376)
T 3hsy_A 1 NSIQIGGLFPRG---ADQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYDKKSVN 74 (376)
T ss_dssp CEEEEEEEEETT---CHHHHHHHHHHHHHTCCS--SCEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCCTTTHH
T ss_pred CCEEEEEEECCC---CHHHHHHHHHHHHHHHCC--CEEEEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEECCCCHHHHH
T ss_conf 940598885799---878999999999997458--73999888644877868999999997742-859999888666899
Q ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 99983055885299411799998766889861688026826779999999987399399999981898887534999999
Q 002454 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (920)
Q Consensus 112 ~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (920)
+++++++.+++|+|+++++ . ....+|+||+.|+ ++.++++++++++|++|++|| |++|| ....+.+.+
T Consensus 75 av~~~~~~~~ip~is~~~~---~---~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~~~~~~ 142 (376)
T 3hsy_A 75 TITSFCGTLHVSFITPSFP---T---DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLD 142 (376)
T ss_dssp HHHHHHHHHTCEEEECSCC---C---CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHHHH
T ss_pred HHHHHHCCCCCCEEECCCC---C---CCCCCCEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHH--HHHHHHHHH
T ss_conf 9999843576853622788---7---6667716996865---789999999966987799998-08425--899999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 98635991586976339998889985789999985102884499998069768999999999859988883999825321
Q 002454 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (920)
Q Consensus 192 ~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (920)
.+++.| ++|+....++... .....|+..++.+++++++|+|++ .++...+..++++++++|+.++.|+||+++...
T Consensus 143 ~~~~~g-~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~ 218 (376)
T 3hsy_A 143 SAAEKK-WQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGF 218 (376)
T ss_dssp HHHHHT-CEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBT
T ss_pred HHHHCC-CEEEEEEECCCCC--CCCCHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 764169-8489997135666--644246999999986279869999-888899999999999726678880899807984
Q ss_pred CCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 134457700002353389987301699901689999999842236999888887502464731999999999861148--
Q 002454 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN-- 349 (920)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~-- 349 (920)
...+.. .......++.++..+.+ ++|.+++|.++|+++|..+++......|+.+++.+|||++++++|++++++.
T Consensus 219 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~ 295 (376)
T 3hsy_A 219 TDGDLL--KIQFGGANVSGFQIVDY-DDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 295 (376)
T ss_dssp TSTTGG--GSCCTTCEEEEEESCCT-TSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHH--HHHCCCCCCEEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 633467--76067758449997648-855799999999742421147877765022589999999999999999985477
Q ss_pred --------------C----CCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf --------------9----984899999880820233120897289766777099994459805899874599998534
Q 002454 350 --------------I----SSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (920)
Q Consensus 350 --------------~----~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g~~~~ 410 (920)
. .++..|+++|++++|+|++|+|+||++|++....++|+++.++++++||+|++..|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 374 (376)
T 3hsy_A 296 EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT 374 (376)
T ss_dssp CCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEC
T ss_conf 6234787871579999875772899999983676787655467899987343489999538986277898388771006
No 5
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=1.00 E-value=1 Score=363.83 Aligned_cols=358 Identities=15% Similarity=0.287 Sum_probs=299.4
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCCEEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 6189999971798364779999999999774279---9954999982489998-99999999876308849999388637
Q 002454 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP-FQAATAAQELINKEKVKVIAGMETWE 108 (920)
Q Consensus 33 ~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~d~-~~a~~~a~~li~~~~v~aiiGp~~s~ 108 (920)
.+|+||+++|+++..|+....|+++|++++|+++ +|++|++++.|+++++ ..+..++|+++. ++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILP-KGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGG-GCCSCEECCSSCH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCCCH
T ss_conf 631588874278744379999999999997437122468479999973488861699999998785-1968999999941
Q ss_pred H-HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEE--EEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCH
Q ss_conf 7-99999830558852994117999987668898616--88026826779999999987399399999981898887534
Q 002454 109 E-TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL--IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (920)
Q Consensus 109 ~-~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~--~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (920)
. +.+++++++.+++|+|++++++ .+...+|++ ||+.|++..++.++++++++++|++|++||++++|| ..+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~----~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g--~~l 155 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEE----TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECL--LRL 155 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCC----CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHH--HHT
T ss_pred HHHHHHHHHHHCCCCCEEECCCCC----CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHH--HHH
T ss_conf 279999999725689758346776----74001565406993698789999999999967996899999674378--889
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99999998635991586976339998889985789999985102884499998069768999999999859988883999
Q 002454 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (920)
Q Consensus 186 ~~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (920)
.+.+ +.+.+.| .++.... ++ . ..|++.++.+++++++|+|++ .++...+..++++++++|+.++.|+|+
T Consensus 156 ~~~~-~~~~~~g-~~v~~~~-~~-~------~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i 224 (393)
T 3om0_A 156 EELV-RGFLISK-ETLSVRM-LD-D------SRDPTPLLKEIRDDKVSTIII-DANASISHLVLRKASELGMTSAFYKYI 224 (393)
T ss_dssp HHHH-HHHHHSS-SCEEEEE-CC--------CCCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHHTTTTSTTCEEE
T ss_pred HHHH-HHHHCCC-CEEEEEE-CC-C------CCCHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9999-7641169-7589983-58-8------877899999987359709999-798889999999999758666870799
Q ss_pred EECCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 82532113445770000235338998730169990168999999984223699988888750246473199999999986
Q 002454 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (920)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~ 345 (920)
+++......+ +.. ......++.++..+.+ .+|.+++|.++|+++|...+.......|+.+++.+|||++++++|+++
T Consensus 225 ~~~~~~~~~~-l~~-~~~~~~~~~g~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~ 301 (393)
T 3om0_A 225 LTTMDFPILH-LDG-IVEDSSNILGFSMFNT-SHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRE 301 (393)
T ss_dssp ECCTTGGGCC-CTT-TCCSSCSEEEEECCCT-TSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCC-HHH-HHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9425423334-144-4135770799998637-860788889999987654036778899764789998689999999999
Q ss_pred HCCC---------------CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 1148---------------9984899999880820233120897289766777099994459805899874599998534
Q 002454 346 LNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (920)
Q Consensus 346 ~~~~---------------~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g~~~~ 410 (920)
+++. ..++..+.++|++++|+|++|+++||++|++....|.|+++.++++++||+|++..|+.+.
T Consensus 302 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp HTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 76422576787699988756574679999982787775431775899965661699998606885686468687780314
Q ss_pred C
Q ss_conf 6
Q 002454 411 S 411 (920)
Q Consensus 411 ~ 411 (920)
.
T Consensus 382 ~ 382 (393)
T 3om0_A 382 A 382 (393)
T ss_dssp -
T ss_pred C
T ss_conf 5
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=360.15 Aligned_cols=351 Identities=16% Similarity=0.253 Sum_probs=299.1
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEECCCCHH
Q ss_conf 777618999997179836477999999999977427999549999824899-9899999999876308849999388637
Q 002454 30 NIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWE 108 (920)
Q Consensus 30 ~~~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-d~~~a~~~a~~li~~~~v~aiiGp~~s~ 108 (920)
..+++|+||+++|+++. ....|+++|++++|+.+ +|++++.|+++ ||..+.+++|+|+.+ +|.+||||.+|.
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g---~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~S~ 78 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYERR 78 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS---EEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCCHH
T ss_pred CCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHCCC---CCCEEEEECCCCCHHHHHHHHHHHHHC-CEEEEECCCCHH
T ss_conf 88764269888669987---79999999999972577---034046752567604489999998852-959999889777
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHH
Q ss_conf 79999983055885299411799998766889861688026826779999999987399399999981898887534999
Q 002454 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (920)
Q Consensus 109 ~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (920)
.+.+++++++.+++|+|+++++ ... ..+|.+++.|+ ++.++++++++++|++|++|| +++|| ....+.
T Consensus 79 ~~~a~~~~~~~~~iP~is~~~~----~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g--~~~~~~ 146 (384)
T 3saj_A 79 TVNMLTSFCGALHVCFITPSFP----VDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRG--LSVLQR 146 (384)
T ss_dssp HHHHHHHHHHHHTCCEEECSCC----CSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHH
T ss_pred HHHHHHHHHCCCCCCEEECCCC----CCC--CCCCEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHH--HHHHHH
T ss_conf 8999999956577986735466----767--66742895365---889999999977996899999-58463--899999
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 99998635991586976339998889985789999985102884499998069768999999999859988883999825
Q 002454 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (920)
Q Consensus 189 l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (920)
+.+.+++.| ++|+....++. ...|+..++.+++++++|+|++ .++...+..++++++++|+.++.|+|++++
T Consensus 147 ~~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~ 218 (384)
T 3saj_A 147 VLDTAAEKN-WQVTAVNILTT------TEEGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILAN 218 (384)
T ss_dssp HHHHHHHHT-CEEEEEEGGGC------CHHHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHTCCTTCEEEEEESS
T ss_pred HHHHHHHCC-CEEEEEEECCC------CCHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 999764059-65999981467------8266899999986069828999-838899999999999768777881899978
Q ss_pred CCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 32113445770000235338998730169990168999999984223699988888750246473199999999986114
Q 002454 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (920)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~ 348 (920)
.+....+. ........++.++..+.+ .+|.+++|.++|++++..+++......++.+++.+|||++++++|++++++
T Consensus 219 ~~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~ 295 (384)
T 3saj_A 219 LGFMDIDL--NKFKESGANVTGFQLVNY-TDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRR 295 (384)
T ss_dssp SCGGGSCH--HHHHHTTCCEEEEECCCT-TSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCH--HHHHCCCCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98452548--886177852599986558-874899999999733743357778774102579999999999999999986
Q ss_pred C--------------------CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 8--------------------99848999998808202331208972897667770999944598058998745999985
Q 002454 349 N--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (920)
Q Consensus 349 ~--------------------~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g~~ 408 (920)
. ..++..+.++|++++|+|++|+++||++|++....+.|+++.++++++||.|++..|+.
T Consensus 296 ~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~ 375 (384)
T 3saj_A 296 QRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFV 375 (384)
T ss_dssp TTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEE
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCC
T ss_conf 25310037888877899988858738999999837675660413768999754545899996268861557886888840
Q ss_pred CC
Q ss_conf 34
Q 002454 409 KT 410 (920)
Q Consensus 409 ~~ 410 (920)
..
T Consensus 376 ~~ 377 (384)
T 3saj_A 376 PA 377 (384)
T ss_dssp EC
T ss_pred CC
T ss_conf 06
No 7
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=1.00 E-value=1 Score=354.18 Aligned_cols=375 Identities=14% Similarity=0.165 Sum_probs=299.2
Q ss_pred CCCCEEEEEEEECCC---CCCHHHHHHHHHHHHHHHCCC-------CCCEEEEEEECCCCCHHHHHHHHHHHHH---CCC
Q ss_conf 776189999971798---364779999999999774279-------9954999982489998999999998763---088
Q 002454 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN---KEK 97 (920)
Q Consensus 31 ~~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~-------~g~~i~l~~~D~~~d~~~a~~~a~~li~---~~~ 97 (920)
.+++|+||+++|+++ ..|.....|+++|++++|+++ +|++|++++.|+++++. ++..+.+++. +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHH-HHHHHHHHHHHHCCCC
T ss_conf 898549999857889766403405999999999998388754446899579999964878666-7999999998633688
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 499993886377999998305588529941179999876688-9861688026826779999999987399399999981
Q 002454 98 VKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176 (920)
Q Consensus 98 v~aiiGp~~s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~-~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~ 176 (920)
|.+||||.+|..+.+++++++.+++|+|+++++++ .+.++. .+|++||+.|++..++.++++++++++|++|++||+|
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~-~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d 163 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAA-GFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 163 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSG-GGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCH-HHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 23998988503678999998626986884777703-32346554771677267588999999999986698578999975
Q ss_pred CCCCCCCC---HHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 89888753---499999998635991586976339998889985789999985102884499998069768999999999
Q 002454 177 NVYGGDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (920)
Q Consensus 177 ~~~g~~~~---~~~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~ 253 (920)
++|| +. ..+.+++.+++.| ++|+....++... .++...+.+++ +++|+|++ +++...+..+++++.
T Consensus 164 ~~~g--~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~~~ 232 (441)
T 1jdp_A 164 DKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDETKD------LDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLVAH 232 (441)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTTSC------CCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHHHCC-CEEEEEEECCCCC------CCHHHHHHHHH-CCCCEEEE-ECCHHHHHHHHHHHH
T ss_conf 8766--402899999999997548-2788888427762------17999999860-57758999-568899999999999
Q ss_pred HCCCCCCCEEEEEEC----------CCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCC
Q ss_conf 859988883999825----------321134457700002353389987301699901689999999842236-999888
Q 002454 254 RMGLVGKDSVWIVTN----------TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE-YPEEDH 322 (920)
Q Consensus 254 ~~g~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~ 322 (920)
+.|+.++.|+|++++ .|... +..........+++.++..+.+ ..|.+++|.++|++++... +. . .
T Consensus 233 ~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~-~~p~~~~F~~~~~~~~~~~~~~-~-~ 308 (441)
T 1jdp_A 233 RHGMTSGDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRT-VKPEFEKFSMEVKSSVEKQGLN-M-E 308 (441)
T ss_dssp HTTCTTTTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECCC-CCHHHHHHHHHHHHHHHTTTCC-C-C
T ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHHHHHEEEEECCC-CCCHHHHHHHHHHHHHHHCCCC-C-C
T ss_conf 839998887999982145444467887667-7641889999986268840578-9842999999999997408998-5-1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECC---CCEEE
Q ss_conf 887502464731999999999861148---998489999988082023312089728976677709999445---98058
Q 002454 323 FHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYK 396 (920)
Q Consensus 323 ~~~~~~a~~~YDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~~---~~~~~ 396 (920)
..++.+++.+||||+++++|++++..+ ..+++.|.++|++++|+|++|+++||++|++ ...|.|++++ ++.++
T Consensus 309 ~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~I~~~~~~~~g~~~ 387 (441)
T 1jdp_A 309 DYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFSVIAMTDVEAGTQE 387 (441)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEEEEEEEETTTTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCCCEEECCCCCC-CCCEEEEECCCCCCCCEE
T ss_conf 0242688889999999999999999828998878999999858846777554697888984-444799841367888557
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 9987459999853467886566666643357888311399987
Q 002454 397 ELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLI 439 (920)
Q Consensus 397 ~vg~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~Wpg~~~ 439 (920)
+||.|++..+... .....+|+|||+..
T Consensus 388 ~VG~~~~~~~~~~----------------~~~~~~i~w~g~~l 414 (441)
T 1jdp_A 388 VIGDYFGKEGRFE----------------MRPNVKYPWGPLKL 414 (441)
T ss_dssp EEEEEETTTTEEE----------------ECC-----------
T ss_pred EEEEECCCCCEEE----------------ECCCCEEECCCCCC
T ss_conf 9999817777698----------------77883466899894
No 8
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=1.00 E-value=1 Score=354.10 Aligned_cols=378 Identities=14% Similarity=0.182 Sum_probs=301.3
Q ss_pred CCEEEEEEEECC---CCCCHHHHH-HHHHHHHHHHCCC---CCCEEEEEEECC-----CCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 618999997179---836477999-9999999774279---995499998248-----9998999999998763088499
Q 002454 33 EVTKIGAIVDAN---SQMGKQAIT-AMKIAVQNFNSDS---RNHKLSLQIRDH-----NRDPFQAATAAQELINKEKVKV 100 (920)
Q Consensus 33 ~~i~IG~i~p~s---~~~g~~~~~-a~~~Av~~iN~~~---~g~~i~l~~~D~-----~~d~~~a~~~a~~li~~~~v~a 100 (920)
++|+||+++|++ +..|.+... |+++|++++|+++ +|++|++++.|+ +|++..++..+.+++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 93389998467688783468877999999999997478878982599999337675456435567999999997339639
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE------E
Q ss_conf 9938863779999983055885299411799998766889861688026826779999999987399399999------9
Q 002454 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI------Y 174 (920)
Q Consensus 101 iiGp~~s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii------~ 174 (920)
||||.+|..+.+++++++.+++|+|+++++++ .+.++..+|++||+.|++..++.++++++++++|++|++| +
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~-~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~ 159 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPAL-GIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLG 159 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCG-GGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSS
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEECCCCCCC-CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99999707788999999765985784555654-46763106707995384888999999999878981899999826877
Q ss_pred EECCCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 818988875349999999863-5991586976339998889985789999985102884499998069768999999999
Q 002454 175 EDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (920)
Q Consensus 175 ~~~~~g~~~~~~~~l~~~l~~-~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~ 253 (920)
+++++| .. ...+.+.+.+ .| ++|+....++.. ..++..++.++++ ++|+|++ .+....+..+++++.
T Consensus 160 ~~~~~g--~~-~~~~~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~l~~i~~-~~~viv~-~~~~~~~~~~~~~a~ 227 (435)
T 1dp4_A 160 DDRPCF--FI-VEGLYMRVRERLN-ITVNHQEFVEGD------PDHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLAL 227 (435)
T ss_dssp SCCHHH--HH-HHHHHHHHHHHHC-CEEEEEEECTTC------GGGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHHH
T ss_pred CCCHHH--HH-HHHHHHHHHHHCC-EEEEEEEEECCC------HHHHHHHHHHHHH-HCCEEEE-ECCHHHHHHHHHHHH
T ss_conf 752488--99-9999999876417-599999972485------5639999999986-2764999-528589999999999
Q ss_pred HCCCCCCCEEEEEECCCCCCCC---------------CCCHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 8599888839998253211344---------------5770000235338998730169990168999999984223699
Q 002454 254 RMGLVGKDSVWIVTNTVANALD---------------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYP 318 (920)
Q Consensus 254 ~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 318 (920)
++|+.++.++|++++.|..... .........++|++.+.++.+ .++.+++|.++|.+.+...+
T Consensus 228 ~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~- 305 (435)
T 1dp4_A 228 NAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEP-DNPEYLEFLKQLKLLADKKF- 305 (435)
T ss_dssp HTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCC-CSHHHHHHHHHHHHHHHHHH-
T ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCC-CCHHHHHHHHHHHHHHCCCC-
T ss_conf 7599989879999952564222354444568761588545999998530599935789-98368999999999735898-
Q ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEC--C
Q ss_conf 988--8887502464731999999999861148---99848999998808202331208972897667770999944--5
Q 002454 319 EED--HFHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV--V 391 (920)
Q Consensus 319 ~~~--~~~~~~~a~~~YDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~f~G~sG~i~F~~~g~~~~~~~~i~~~--~ 391 (920)
.+. ...++.+++.+|||++++++|++++..+ ..+++.|.++|++++|+|++|+++|+++|++ ...+.|+++ .
T Consensus 306 ~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~-~~~~~i~~~~~~ 384 (435)
T 1dp4_A 306 NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDR-DTDFSLWDMDPE 384 (435)
T ss_dssp CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBB-CCCEEEEEECTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCC-CCEEEEEEECCC
T ss_conf 8655311164899999999999999999999708997779999999857656534035898788974-011699985388
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 980589987459999853467886566666643357888311399987889994
Q 002454 392 GKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKG 445 (920)
Q Consensus 392 ~~~~~~vg~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~Wpg~~~~~~p~~ 445 (920)
+++++.||.|++..+ .+. .....+|+||++ ++|..
T Consensus 385 ~g~~~~vg~~~~~~~---~l~-------------~~~~~~i~W~~~---~~P~~ 419 (435)
T 1dp4_A 385 TGAFRVVLNYNGTSQ---ELM-------------AVSEHKLYWPLG---YPPPD 419 (435)
T ss_dssp TCCEEEEEEECTTTC---CEE-------------ESTTCCCCCTTS---SCCCS
T ss_pred CCCEEEEEEECCCCC---EEE-------------ECCCCEEECCCC---CCCCC
T ss_conf 985799999537776---699-------------728824368898---79899
No 9
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=1.00 E-value=1 Score=352.33 Aligned_cols=359 Identities=19% Similarity=0.274 Sum_probs=300.7
Q ss_pred CCCEEEEEEEECC-CCCCHHHHHHHHHHHHHHHCCC---CCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 7618999997179-8364779999999999774279---9954999982489-998999999998763088499993886
Q 002454 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMET 106 (920)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~-~d~~~a~~~a~~li~~~~v~aiiGp~~ 106 (920)
+++|+||+++|++ +..|.....|+++|++++|+++ ++.++++++.|.. .|+..+...+|+++. ++|.+||||.+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~-~~V~aiiG~~~ 80 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS-LGVAAIFGPSH 80 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH-HCCSCEECCSS
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCC
T ss_conf 96137878853787666448999999999997468422577468879853587675899999998664-39489999998
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHH
Q ss_conf 37799999830558852994117999987668898616880268267799999999873993999999818988875349
Q 002454 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (920)
Q Consensus 107 s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (920)
|..+.+++++++.+++|+|+++++++ .+. ...+|+||+.|++..++.++++++++++|++|++|| |++|| ....
T Consensus 81 S~~~~a~~~~~~~~~ip~is~~~~~~--~l~-~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g--~~~~ 154 (395)
T 3h6g_A 81 SSSANAVQSICNALGVPHIQTRWKHQ--VSD-NKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG--LIRL 154 (395)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCCCC--CTT-CCCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHH--HHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCC--CCC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE-ECHHH--HHHH
T ss_conf 25899999998607998685046766--556-667518995588778999999999977984999999-78467--8999
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999986359915869763399988899857899999851028844999980697689999999998599888839998
Q 002454 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (920)
Q Consensus 187 ~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (920)
+.+++.+++.| ++++... ++... .|+..++.+++++++|+|++ .+....+..++++++++|+.++.|+|++
T Consensus 155 ~~~~~~~~~~g-~~v~~~~-~~~~~------~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~gl~~~~~~~i~ 225 (395)
T 3h6g_A 155 QELIKAPSRYN-LRLKIRQ-LPADT------KDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEYYHYIF 225 (395)
T ss_dssp HHHHTGGGTSS-CEEEEEE-CCSSG------GGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHHHHCCC-CEEEEEE-ECCCC------HHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99998621489-5699999-27984------65999999986459759999-8987999999999997163578528999
Q ss_pred ECCCCCCCCCCCHHHHCCCCE--EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHH
Q ss_conf 253211344577000023533--8998730169990168999999984223699988----8887502464731999999
Q 002454 267 TNTVANALDSLNTTVISSMEG--TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED----HFHPSIHALRAHDSIKIIT 340 (920)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~a~~~YDav~~~a 340 (920)
++......+.... ...| +.++..+. ..++..++|.++|++++....+... ...++.+++.+|||+++++
T Consensus 226 ~~~~~~~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a 300 (395)
T 3h6g_A 226 TTLDLFALDVEPY----RYSGVNMTGFRILN-TENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVS 300 (395)
T ss_dssp CCTTGGGBCCTTT----TTSCCEEEEEECSC-TTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred ECCCEEEECHHHH----CCCCCCEEEEEEEC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6475067105774----16763318999754-895899999999874302367666777677754456799986899999
Q ss_pred HHHHHHCCC------------CCCHHHHHHHHHHCCCCCCCCCEEEEC-CCCCCCCCEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 999861148------------998489999988082023312089728-9766777099994459805899874599998
Q 002454 341 EAIGRLNYN------------ISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (920)
Q Consensus 341 ~Al~~~~~~------------~~~~~~l~~~l~~~~f~G~sG~i~F~~-~g~~~~~~~~i~~~~~~~~~~vg~w~~~~g~ 407 (920)
+|++++++. ..++..+.++|++++|+|++|+++||+ +|++....+.|++++++++++||+|++..|+
T Consensus 301 ~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 380 (395)
T 3h6g_A 301 VAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGL 380 (395)
T ss_dssp HHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCEECCCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 99976540787677789998676619999999618776752324864898806677589998415774477898388881
Q ss_pred CCCC
Q ss_conf 5346
Q 002454 408 SKTS 411 (920)
Q Consensus 408 ~~~~ 411 (920)
.+..
T Consensus 381 ~~~~ 384 (395)
T 3h6g_A 381 NMTE 384 (395)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 1158
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=351.39 Aligned_cols=376 Identities=17% Similarity=0.284 Sum_probs=301.2
Q ss_pred CCCCEEEEEEEECCC-------------CCCHHHHHHHHHHHHHHHCCC---CCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 776189999971798-------------364779999999999774279---9954999982489998999999998763
Q 002454 31 IEEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN 94 (920)
Q Consensus 31 ~~~~i~IG~i~p~s~-------------~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~d~~~a~~~a~~li~ 94 (920)
.+++|+||+++|+++ ..|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.+++.
T Consensus 11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~ 90 (555)
T 2e4u_A 11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 90 (555)
T ss_dssp ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 58999999998806778888765564642216999999999999847997788976989999789986899999999975
Q ss_pred ------------------------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf ------------------------08849999388637799999830558852994117999987668898616880268
Q 002454 95 ------------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150 (920)
Q Consensus 95 ------------------------~~~v~aiiGp~~s~~~~~~a~~~~~~~iP~Is~~~~~~~~~~~~~~~~~~~r~~p~ 150 (920)
+++|.+||||.+|..+.+++++++.+++|+|+++++++ .+.++..+|++||+.|+
T Consensus 91 ~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~-~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 91 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSA-KLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCG-GGGCTTTCTTEEESSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCC-CCCCCCCCCCCEEECCC
T ss_conf 76756678875267776554445678559999988727999999997076875685775887-66885448873351797
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-
Q ss_conf 2677999999998739939999998189888753499999998635991586976339998889985789999985102-
Q 002454 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD- 229 (920)
Q Consensus 151 ~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~- 229 (920)
+..++.++++++++++|++|++|++|++|| ....+.+++.+++.| ++|+....++... ...++..++.+++.
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~----~~~~~~~~l~~i~~~ 242 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATAEKVGRSN----IRKSYDSVIRELLQK 242 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTH--HHHHHHHHHHHHTTT-CEEEEEEEECTTC----CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEECHHH--HHHHHHHHHHHHHCC-CCEEEEEEECCCC----CHHHHHHHHHHHHCC
T ss_conf 488999999999986982999999428379--999999999998789-6289999937887----768999999997216
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCHHHHH----
Q ss_conf 8844999980697689999999998599888839998253211344577000023533899873016999016899----
Q 002454 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEF---- 305 (920)
Q Consensus 230 ~~~~viii~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f---- 305 (920)
+++|+||+ .++...+..+++++.+.|+ +++||+++.|........ .....++|++++..+... .+.+++|
T Consensus 243 s~a~vIi~-~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~-ipgf~~f~~~~ 316 (555)
T 2e4u_A 243 PNARVVVL-FMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHP-VRQFDRYFQSL 316 (555)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCC-CHHHHHHHHTC
T ss_pred CCCCEEEE-ECCHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCHHHC-CCHHHCCEEEEEEECCCC-CCCHHHHHHHC
T ss_conf 88878999-9277999999999998668---829998053103311210-212114548999744678-97679999647
Q ss_pred -----------HHHHHHHCCCCCC-------CCCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCC----------
Q ss_conf -----------9999984223699-------9888--------887502464731999999999861148----------
Q 002454 306 -----------SALFRRNFTSEYP-------EEDH--------FHPSIHALRAHDSIKIITEAIGRLNYN---------- 349 (920)
Q Consensus 306 -----------~~~~~~~~~~~~~-------~~~~--------~~~~~~a~~~YDav~~~a~Al~~~~~~---------- 349 (920)
.+.|...|.-... .|.+ ..+..+++.+||||+++|+||+++...
T Consensus 317 ~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~ 396 (555)
T 2e4u_A 317 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCD 396 (555)
T ss_dssp CTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCG
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 84558998799999999759999877766789997423033434333545016879999999999998501678876664
Q ss_pred ---CCCHHHHHH-HHHHCCCC------CCCCC-EEEECCCCCCCCCEEEEECC--CC--EEEEEEEECCCCCCCCCCCCC
Q ss_conf ---998489999-98808202------33120-89728976677709999445--98--058998745999985346788
Q 002454 350 ---ISSPEMLLR-QMLSSDFS------GLSGK-IRFKDGELLNADTLRIVNVV--GK--KYKELDFWLPNFGFSKTSSKH 414 (920)
Q Consensus 350 ---~~~~~~l~~-~l~~~~f~------G~sG~-i~F~~~g~~~~~~~~i~~~~--~~--~~~~vg~w~~~~g~~~~~~~~ 414 (920)
..++++|.+ +|++++|. |++|. +.||++|++ ...|+|++++ ++ .+++||.|++. +..+
T Consensus 397 ~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~~--l~i~---- 469 (555)
T 2e4u_A 397 AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAET--LSLD---- 469 (555)
T ss_dssp GGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESSS--EECC----
T ss_pred CCCCCCCCCCCHHHHHCEEECCCCCCCCCCCCEEEECCCCCC-CCEEEEEEEEECCCCEEEEEEEEECCE--EEEE----
T ss_conf 467898240127757132514544566889986897589985-321789999956996899999886164--7880----
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf 656666664335788831139998788999
Q 002454 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPK 444 (920)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~Wpg~~~~~~p~ 444 (920)
...|.|++ . ++|.
T Consensus 470 --------------~~~I~W~~--~-~~P~ 482 (555)
T 2e4u_A 470 --------------VDSIHWSR--N-SVPT 482 (555)
T ss_dssp --------------GGGCCCTT--S-SCCC
T ss_pred --------------CCCCCCCC--C-CCCC
T ss_conf --------------31033577--8-8764
Done!