BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002455
(920 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 219 bits (558), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 176/297 (59%), Gaps = 13/297 (4%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITEC 86
DRVF G+ +T VYE+ A I S + G N +IFAYGQT+SGKTYTM G +
Sbjct: 48 FDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPR 107
Query: 87 TVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXXXXXXX 144
+ DIF I + +R F+L+ S MEIYNE I DLL + PL + +D
Sbjct: 108 AIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLT 167
Query: 145 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR-EFLGKENSTTL 203
++ + ++ E R GET +N++SSRSH I R+++ES + E E S +
Sbjct: 168 EEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKV 227
Query: 204 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSK 262
S +N VDLAGSERA+Q + G RLKEGC+INRSL L VI+KLS G+ G INYRDSK
Sbjct: 228 S-HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286
Query: 263 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 319
LTR+LQ LGGNA+T IICT++P ++T L FA AK + VN V +D+
Sbjct: 287 LTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 178/336 (52%), Gaps = 29/336 (8%)
Query: 1 MKQPIGNASMTPLSYTETPFGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVS 60
+K P G A P ++T D V+ + ++Y++ + + SV+
Sbjct: 56 VKNPKGTAHEMPKTFT----------------FDAVYDWNAKQFELYDETFRPLVDSVLQ 99
Query: 61 GINSSIFAYGQTSSGKTYTMTGI-----TECTVADIFDYIHRHEERA----FVLKFSAME 111
G N +IFAYGQT +GKTYTM GI + + FD+I H R+ ++++ S +E
Sbjct: 100 GFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLE 159
Query: 112 IYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGET 170
IY E IRDLLS D T L L + P + K ++ ++++ R +G T
Sbjct: 160 IYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGAT 219
Query: 171 LLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKE 230
+NE SSRSH I + IE S G EN + +N VDLAGSER ++ + G RLKE
Sbjct: 220 NMNEHSSRSHAIFVITIECSEVGLDG-ENHIRV-GKLNLVDLAGSERQAKTGAQGERLKE 277
Query: 231 GCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 290
IN SL L VI L G++ HI YRDSKLTR+LQ LGGNA+T ++ + PA +V
Sbjct: 278 ATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV 337
Query: 291 EQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ 326
E+T TL +A AK + K +VN D AL++ Q
Sbjct: 338 EETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 159/294 (54%), Gaps = 15/294 (5%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------- 80
++L D+VF + S +VY + AK I V++G N +IFAYGQTSSGKT+TM
Sbjct: 52 VYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVK 111
Query: 81 TGITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXX 139
GI V DIF++I+ E F +K S EIY + IRDLL L + +D
Sbjct: 112 QGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPY 171
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 199
+ + E++ ++ R I T +NE SSRSH + + ++ +E L EN
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVK---QENL--EN 226
Query: 200 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYR 259
LS + VDLAGSE+ S+ + G L E +IN+SL L VI L+ G HI YR
Sbjct: 227 QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYR 286
Query: 260 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313
DSKLTR+LQ LGGNART I+ SPA + +T++TL F AK V VN
Sbjct: 287 DSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN 340
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 179 bits (453), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 163/300 (54%), Gaps = 22/300 (7%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------T 81
+ DRVF S QVY D AK+I V+ G N +IFAYGQTSSGKT+TM
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 82 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 140
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 201 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 317
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK + VNV ++
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 162/300 (54%), Gaps = 22/300 (7%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------T 81
+ DRVF S QVY D AK+I V+ G N +IFAYGQTSSGK +TM
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGM 105
Query: 82 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 140
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 201 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 317
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK + VNV ++
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 158/289 (54%), Gaps = 22/289 (7%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------T 81
+ DRVF S QVY D AK+I V+ G N +IFAYGQTSSGKT+TM
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 82 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 140
GI V DIF+YI+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYV 165
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ + + + + ++ R + T +NE SSRSH I + ++ +EN+
Sbjct: 166 KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENT 217
Query: 201 TT---LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
T LS + VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++
Sbjct: 218 QTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVP 276
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
YRDSK+TR+LQ LGGN RT I+ SP+ + +T++TLLF AK +
Sbjct: 277 YRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 162/315 (51%), Gaps = 36/315 (11%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG---------I 83
D V+ +Y++ + + SV+ G N ++FAYGQT +GKTYTM G +
Sbjct: 72 FDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGV 131
Query: 84 TECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD-NTPLRLLDDPXXXXXXXX 142
IF +I R + + ++++ S +EIY E IRDLLS + L L ++P
Sbjct: 132 IPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKD 191
Query: 143 XXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 202
+ K+ ++ ++++ R +G T +NE SSRSH I + +E S R G+++
Sbjct: 192 LSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRV 251
Query: 203 LSASVNFVDLAGSERASQA---LSTGA---------------------RLKEGCHINRSL 238
+N VDLAGSER ++A + GA R KE IN SL
Sbjct: 252 --GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSL 309
Query: 239 LTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLL 298
L VI L+ R+ HI YRDSKLTR+LQ LGGNA+T ++ TL PA +++ +TL
Sbjct: 310 SALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLR 369
Query: 299 FACCAKEVTTKAQVN 313
FA AK + K +VN
Sbjct: 370 FANRAKNIKNKPRVN 384
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 17/305 (5%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------IT 84
H+ DRVF G+ + V+ED K + S V G N IFAYGQT SGKT+T+ G +T
Sbjct: 49 HMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLT 107
Query: 85 ECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD---DPXXXXXX 140
++++F + + + +F LK +E+Y + + DLL LD D
Sbjct: 108 PRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSV 167
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ + LK ++ QR TL+NE+SSRSH I+ ++IES+ +
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST-----NLQTQ 222
Query: 201 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 260
++FVDLAGSER ++ S G +LKE IN+SL L VI LS G N HI YR+
Sbjct: 223 AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRN 281
Query: 261 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 320
KLT ++ LGGNA+T + +SPA S++++T N+L +A + + NV + A
Sbjct: 282 HKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVA 341
Query: 321 LVKHL 325
+K L
Sbjct: 342 RLKKL 346
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 169/314 (53%), Gaps = 29/314 (9%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGIT 84
H+ DRVF S ++ED K + S V G N IFAYGQT SGKT+T+ G+T
Sbjct: 57 HIYDRVFDMRASQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLT 115
Query: 85 ECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLL---STDNTPLRLLDDPXXXXXX 140
++F+ + R +R +F LK +E+Y + + DLL S L + D
Sbjct: 116 PRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFV 175
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ L+ +L +R + T +NE+SSRSH I+ ++IES + +
Sbjct: 176 ENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-----IDLQTQ 230
Query: 201 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 260
+ ++FVDLAGSER ++ S G +LKE IN+SL L VI LS G N HI YR+
Sbjct: 231 SAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPYRN 289
Query: 261 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 320
KLT ++ LGGNA+T + +SPA S++++T N+LL+A ++V +++D +
Sbjct: 290 HKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYA---------SRVRTIVNDPS 340
Query: 321 LVKHL-QKELARLE 333
KH+ KE+ RL+
Sbjct: 341 --KHISSKEMVRLK 352
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 16/305 (5%)
Query: 34 DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG----------I 83
DRVF C + +++ K +++G N ++FAYGQT +GK+YTM G +
Sbjct: 52 DRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGV 111
Query: 84 TECTVADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXX 142
V IF I + ++ S MEIY E IRDLL+ N L + ++
Sbjct: 112 IPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKG 171
Query: 143 XXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 202
+ + E++ R + T +N++SSRSH I + I E +
Sbjct: 172 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETGSA 226
Query: 203 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSK 262
S + VDLAGSE+ + ++G L+E IN+SL L VI L+ G++ H+ YRDSK
Sbjct: 227 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSK 286
Query: 263 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALV 322
LTR+LQ LGGN+RT +I SP+ + +T +TL F AK + KA+VN +S L
Sbjct: 287 LTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELK 346
Query: 323 KHLQK 327
+ L K
Sbjct: 347 QMLAK 351
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 158/289 (54%), Gaps = 14/289 (4%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE------C 86
D V+ +++ K + +V+ G NS+IFAYGQT +GKT+TM G E
Sbjct: 60 FDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPN 119
Query: 87 TVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXX 145
+ +FD I+ + F++ S +E+YNE IRDL+ +NT L L +D
Sbjct: 120 SFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSM 178
Query: 146 XILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSA 205
+ L L+ A R + T +N+ SSRSH I + IE S E + EN +
Sbjct: 179 HRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS--EVI--ENKEVIRV 234
Query: 206 S-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLT 264
+N VDLAGSER S+ +TG L EG IN SL L VI KL +G HI YRDSKLT
Sbjct: 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-HIPYRDSKLT 293
Query: 265 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313
R+LQ LGGN++T + +SPA ++ ++T +TL +A AK++ K ++N
Sbjct: 294 RLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 159/300 (53%), Gaps = 25/300 (8%)
Query: 41 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIF 92
S QVY D +E+ G N IFAYGQT +GK+YTM G I D+F
Sbjct: 84 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 143
Query: 93 DYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILK 149
I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P +
Sbjct: 144 SRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVT 203
Query: 150 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS-VN 208
+N +++L+ R + T +NE SSRSH + ++ + + + N TT S ++
Sbjct: 204 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNITTEKVSKIS 261
Query: 209 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-----------HIN 257
VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G I
Sbjct: 262 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 321
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 317
YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++ VN+ ++
Sbjct: 322 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNLELT 381
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 151/304 (49%), Gaps = 24/304 (7%)
Query: 20 FGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79
G+D HF + V D VY+ + + + G N+++FAYGQT SGKTYT
Sbjct: 46 LGRDRHFGFHV-----VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT 100
Query: 80 M------------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDN 125
M GI +A+ F I ++ ++ S +E+Y E RDLL T +
Sbjct: 101 MGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160
Query: 126 TPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRL 185
++L +D ++ + + LL + A R G T LN SSRSH + +
Sbjct: 161 RDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTV 220
Query: 186 MIESSAR---EFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLS 242
+E R L + +FVDLAGSER + STG RLKE IN SLL L
Sbjct: 221 TLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALG 280
Query: 243 TVIRKLS--KGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
VI L + R HI YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A
Sbjct: 281 NVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYA 340
Query: 301 CCAK 304
A+
Sbjct: 341 SRAQ 344
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 25/296 (8%)
Query: 41 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIF 92
S QVY D +E+ G N IFAYGQT +GK+YTM G I D+F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 93 DYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILK 149
I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P +
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVT 187
Query: 150 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS-VN 208
+N +++L+ R + T +NE SSRSH + ++ + + + N TT S ++
Sbjct: 188 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNITTEKVSKIS 245
Query: 209 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-----------HIN 257
VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G I
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313
YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++ VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 25/296 (8%)
Query: 41 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIF 92
S QVY D +E+ G N IFAYGQT +GK+YTM G I D+F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 93 DYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILK 149
I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P +
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVT 187
Query: 150 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS-VN 208
+N +++L+ R + T +NE SSRSH + ++ + + + N TT S ++
Sbjct: 188 SYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNITTEKVSKIS 245
Query: 209 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-----------HIN 257
VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G I
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313
YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++ VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 27/302 (8%)
Query: 34 DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG----------- 82
DR F + VY + V++G N ++FAYGQT +GKT+TM G
Sbjct: 72 DRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWE 131
Query: 83 ------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNT-PLRLLDDPX 135
I ++ +FD + R E + ++ S +E+YNE + DLLSTD+T +R+ DD
Sbjct: 132 DDSDIGIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDST 190
Query: 136 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 193
+ + + +LL + +R+ TL+N +SSRSH + +++ RE
Sbjct: 191 KKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH--IRE 248
Query: 194 FLGKENSTTLS-ASVNFVDLAGSERASQALS-TGARLKEGCHINRSLLTLSTVIRKLSKG 251
G E L +N VDLAGSE S+A + G R++E +IN+SLLTL VI L
Sbjct: 249 N-GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD- 306
Query: 252 RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 311
R H+ YR+SKLTR+LQ LGG +T+II T+SP +E+T +TL +A AK + K +
Sbjct: 307 RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366
Query: 312 VN 313
VN
Sbjct: 367 VN 368
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 157/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N++IFAYGQT +GKT+TM
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 126 CWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 184
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 245 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 309 KAQVN 313
K +VN
Sbjct: 362 KPEVN 366
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 25/296 (8%)
Query: 41 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIF 92
S QVY D +E+ G N IFAYGQT +GK+YTM G I D+F
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLF 127
Query: 93 DYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILK 149
I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P +
Sbjct: 128 SRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVT 187
Query: 150 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS-VN 208
+N +++L+ R + T +NE SSRSH + ++ + + + N TT S ++
Sbjct: 188 SYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNITTEKVSKIS 245
Query: 209 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG-----------HIN 257
VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G I
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313
YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++ VN
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 127
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 186
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 187 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 246
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 247 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 304
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 305 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 363
Query: 309 KAQVN 313
K +VN
Sbjct: 364 KPEVN 368
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 184
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 245 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 309 KAQVN 313
K +VN
Sbjct: 362 KPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 184
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 245 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 309 KAQVN 313
K +VN
Sbjct: 362 KPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 124
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 183
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 184 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 243
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 244 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 301
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 302 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 360
Query: 309 KAQVN 313
K +VN
Sbjct: 361 KPEVN 365
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 184
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 245 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 309 KAQVN 313
K +VN
Sbjct: 362 KPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 175
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 176 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 235
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 236 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 293
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 294 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 352
Query: 309 KAQVN 313
K +VN
Sbjct: 353 KPEVN 357
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 26/305 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 184
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 185 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 244
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 245 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 302
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 303 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Query: 309 KAQVN 313
K +VN
Sbjct: 362 KPEVN 366
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 164/326 (50%), Gaps = 46/326 (14%)
Query: 33 IDRVFWGD-------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE 85
D+ FW + VY+ +E G ++ IFAYGQT SGK+YTM G +
Sbjct: 100 FDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPD 159
Query: 86 C------TVADIFDYIHRHEER----AFVLKFSAMEIYNEAIRDLLS--TDNTP---LRL 130
T D+F I ++ ++ +K S E+YNE +RDLL+ N P L++
Sbjct: 160 QPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKV 219
Query: 131 LDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESS 190
+ P ++ + + I + R + T +N+ SSRSH + +M++
Sbjct: 220 RESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQI 279
Query: 191 AREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS- 249
+ L +++T S+ + VDLAGSERA +TG RL+EG +IN+SL TL VI L+
Sbjct: 280 HHD-LETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALAD 338
Query: 250 ---------------KGR-----NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 289
+GR N + YRDS LT +L+ LGGN++TA+I +SP +
Sbjct: 339 PKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TD 396
Query: 290 VEQTRNTLLFACCAKEVTTKAQVNVV 315
++T +TL +A AK + T+A VN V
Sbjct: 397 YDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 28/300 (9%)
Query: 30 IHLIDRVFWG-DCSTTQ-------VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81
+ D FW D S + V++ + I + G N+ IFAYGQT SGK+YTM
Sbjct: 52 VFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111
Query: 82 GITE--------CTVADIFDYIHR--HEERAFVLKFSAMEIYNEAIRDLLSTDNT--PLR 129
G + C+ +F+ + +EE++F ++ S MEIYNE +RDLL + L+
Sbjct: 112 GTADQPGLIPRLCS--GLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169
Query: 130 LLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIES 189
+ + + + ++ L+S R + T +NE+SSRSH + ++ +
Sbjct: 170 VREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTH 229
Query: 190 SAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 249
+ + + + ++ VDLAGSERA++ + G RLKEG +IN+SL TL VI L+
Sbjct: 230 TLYDVKSGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALA 288
Query: 250 -----KGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304
K +N + YRDS LT +L+ LGGN++TA++ T+SPA + ++T +TL +A AK
Sbjct: 289 DQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 146/284 (51%), Gaps = 12/284 (4%)
Query: 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADI 91
+ D VF + ++V+E K I S ++G N ++ AYG T +GKT+TM G +
Sbjct: 75 VFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMY 134
Query: 92 FDYIHRH-------EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXX 144
+H + EE+ S +E+YNE IRDLL ++ PL + +D
Sbjct: 135 LTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGLT 193
Query: 145 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLS 204
K + LL R T +N SSRSH + ++ + + N
Sbjct: 194 LHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT--ASINQNVRI 251
Query: 205 ASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL--SKGRNGHINYRDSK 262
A ++ +DLAGSERAS + + G R EG +INRSLL L VI L SK +N HI YR+SK
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 263 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
LTR+L+ LGGN +T +I +SP+ + T NTL +A AK++
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 153/301 (50%), Gaps = 26/301 (8%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 80
+ D VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 110
Query: 81 -------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRL 130
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++
Sbjct: 111 TWEEDPLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQM 169
Query: 131 LDDPXXXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188
DDP + + + + ++L A+R TL+N SSRSH + + I
Sbjct: 170 FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIH 229
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L
Sbjct: 230 MKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITAL 287
Query: 249 SKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308
+ R H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK +
Sbjct: 288 VE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
Query: 309 K 309
K
Sbjct: 347 K 347
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 149/304 (49%), Gaps = 24/304 (7%)
Query: 20 FGKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79
G+D HF + V D VY+ + + + G N+++FAYGQT SGKTYT
Sbjct: 46 LGRDRHFGFHV-----VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT 100
Query: 80 M------------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDN 125
M GI +A+ F I ++ ++ S +E+Y E RDLL T +
Sbjct: 101 MGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160
Query: 126 TPLRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRL 185
++L +D ++ + + LL + A R G T LN SSRSH + +
Sbjct: 161 RDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTV 220
Query: 186 MIESSAR---EFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLS 242
++ R L + +FVDLAGSER + STG KE IN SLL L
Sbjct: 221 TLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALG 280
Query: 243 TVIRKLS--KGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
VI L + R +I YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A
Sbjct: 281 NVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYA 340
Query: 301 CCAK 304
A+
Sbjct: 341 SRAQ 344
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 26/297 (8%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC--- 86
I D+VF S + ++E + I S + G N IFAYGQT SGKTYTM G+ E
Sbjct: 107 IFSFDQVFHPLSSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 165
Query: 87 ---TVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXX 139
TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 166 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 225
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK-- 197
+ D NHL+ L+ + R T NE+SSRSH + +L E +G+
Sbjct: 226 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHA 278
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
E S+N VDLAGSE T R+ E +INRSL L+ VI L + + HI
Sbjct: 279 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIP 333
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 313
YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 334 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 26/297 (8%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC--- 86
I D+VF S + ++E + I S + G N IFAYGQT SGKTYTM G+ E
Sbjct: 101 IFSFDQVFHPLSSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 159
Query: 87 ---TVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXX 139
TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 160 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 219
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK-- 197
+ D NHL+ L+ + R T NE+SSRSH + +L E +G+
Sbjct: 220 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHA 272
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
E S+N VDLAGSE T R+ E +INRSL L+ VI L + + HI
Sbjct: 273 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIP 327
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 313
YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 328 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 26/297 (8%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC--- 86
I D+VF S + ++E + I S + G N IFAYGQT SGKTYTM G+ E
Sbjct: 115 IFSFDQVFHPLSSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 173
Query: 87 ---TVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXX 139
TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 174 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 233
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK-- 197
+ D NHL+ L+ + R T NE+SSRSH + +L E +G+
Sbjct: 234 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHA 286
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
E S+N VDLAGSE T R+ E +INRSL L+ VI L + + HI
Sbjct: 287 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIP 341
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 313
YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 342 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 398
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 21/280 (7%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGITEC 86
+D+VF S V+++ + + S + G N IFAYGQT +GKTYTM GI +
Sbjct: 52 LDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQR 110
Query: 87 TVADIFDYIH-RHEERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXXXXXXXX 142
+ +F + + + + + SA EIYNE +RDLL + +RL D
Sbjct: 111 ALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPG 170
Query: 143 XXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 202
++ + + ++ R T LNE SSRSH ++ + + G + ST
Sbjct: 171 LTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR-------GVDCSTG 223
Query: 203 L--SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 260
L + +N VDLAGSER ++ + G+RL+E HIN+SL L VI L + R GH+ +R+
Sbjct: 224 LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRN 282
Query: 261 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
SKLT +LQ L G+++T ++ +SP + +T +L FA
Sbjct: 283 SKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFA 322
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 152/297 (51%), Gaps = 26/297 (8%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC--- 86
I D+VF S + ++E + I S + G N IFAYGQT SGKTYTM G+ E
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 162
Query: 87 ---TVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXX 139
TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 163 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 222
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK-- 197
+ D NHL+ L+ + R T NE+SSRSH + +L E +G+
Sbjct: 223 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHA 275
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
E S+N VDLAGSE T R+ E +I RSL L+ VI L + + HI
Sbjct: 276 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQ-KQDHIP 330
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 313
YR+SKLT +L P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 331 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 148/283 (52%), Gaps = 25/283 (8%)
Query: 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC--- 86
I D+VF S + ++E + I S + G N IFAYGQ+ SGKTYTM G+ E
Sbjct: 104 IFSFDQVFHPLSSQSDIFEMVSPLIQ-SALDGYNICIFAYGQSGSGKTYTMDGVPESVGV 162
Query: 87 ---TVADIFDYI--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXX 139
TV +FD I +R+ + +K + +EIYNE + DLLS + + +R+ +
Sbjct: 163 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIY 222
Query: 140 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK-- 197
+ D NHL+ L+ + R T NE+SSRSH + +L E +G+
Sbjct: 223 VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHA 275
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
E S+N VDLAGSE T R+ E +INRSL L+ VI L + + HI
Sbjct: 276 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIP 330
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
YR+SKLT +L P LGGN++T + +SP + +++ +L FA
Sbjct: 331 YRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 149/280 (53%), Gaps = 16/280 (5%)
Query: 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECT 87
L D++F + S V+E+ ++ I S+ G N +FAYGQT SGKT+TM+ G+ +
Sbjct: 433 LFDKIFEREQSNDLVFEELSQLIQCSL-DGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLS 491
Query: 88 VADIFDYIHRHEER--AFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXXXXXXXX 142
+ IF+ I +E+ ++ ++ +EIYNEAI DLL+ NT + D
Sbjct: 492 LKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVT 551
Query: 143 XXXXI-LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 201
I +K +L+ +R T N+ SSRSH I +I+ L KE+S
Sbjct: 552 NVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSI--FIIDLQGYNSLTKESSY 609
Query: 202 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDS 261
++N +DLAGSER + + + G RLKE IN+SL L VI L+ H+ YR+S
Sbjct: 610 ---GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNS 666
Query: 262 KLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 301
KLT +L+ LGGN++T + +SP + +T N+L FA
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 19/282 (6%)
Query: 40 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC---------TVAD 90
D S VYE AK++ + G N +I YGQT +GKTYTM G TE +
Sbjct: 82 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ 141
Query: 91 IFDYIHRHEERAFVLKFSAMEIYNEAIRDLLST------DNTPLRLLDDPXXXXXXXXXX 144
+F I A ++ S +EIYNE++ DLLST TP+ ++++P
Sbjct: 142 VFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSV 201
Query: 145 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLS 204
++ + LL E R I +N+ SSRSH I + +E+ +R L +E T
Sbjct: 202 HLTSQEEDAF-SLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT-LSEEKYIT-- 257
Query: 205 ASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLT 264
+ +N VDLAGSER ++ S G LKE +IN+SL L I L + HI +R KLT
Sbjct: 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLT 317
Query: 265 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
L+ LGGN ++ + + +E+T ++L FA K V
Sbjct: 318 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 24/286 (8%)
Query: 34 DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVA 89
D++F + V+++ ++ S + G N +IFAYGQT SGKT+TM GI T++
Sbjct: 113 DKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTIS 171
Query: 90 DIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXXX 137
IF++I++ + + + K +A +EIYNE I DLL +DN T + L D
Sbjct: 172 HIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 231
Query: 138 XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 197
L+ ++ +L R T NE SSRSH I + + S + G
Sbjct: 232 TTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-TGA 290
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNGH 255
+ TL N VDLAGSER + + G RL+E +IN+SL L VI L + H
Sbjct: 291 HSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRH 346
Query: 256 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 301
I +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 347 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 146/307 (47%), Gaps = 18/307 (5%)
Query: 36 VFWGDCSTTQ-VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE---CTVADI 91
F+G+ ST Q +Y + I ++ G N+S+ AYG T +GKT+TM G E +
Sbjct: 71 AFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRAL 130
Query: 92 FDYIHRHEER-------AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXX 144
D + E A + S +EIY E + DLL + L + +D
Sbjct: 131 MDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLS 190
Query: 145 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLS 204
+ + + R +G T LN++SSRSH + L+++ RE L
Sbjct: 191 QKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAV--LLVKVDQRERLAPFRQR--E 246
Query: 205 ASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLT 264
+ +DLAGSE + + G RLKE IN SL L V+ L++G + YRDSKLT
Sbjct: 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP-RVPYRDSKLT 305
Query: 265 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKAL--V 322
R+LQ LGG+A + +I ++P R T + L FA +KEV + N + AL V
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPV 365
Query: 323 KHLQKEL 329
K QKEL
Sbjct: 366 KLSQKEL 372
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 26/287 (9%)
Query: 34 DRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVA 89
D++F + +++++ + I S + G N IFAYGQT SGKTYTM GI T+
Sbjct: 79 DKIFDQQETNDEIFKEVGQLIQ-SSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATIN 137
Query: 90 DIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLL------------STDNTPLRLLDDPX 135
IF +I + R + K S +EIYNE I DLL + D+ D
Sbjct: 138 HIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQEL 197
Query: 136 XXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 195
+L + + ++L R T NE SSRSH I + +E E
Sbjct: 198 KTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGK-NEGT 256
Query: 196 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRN 253
G+++ L N VDLAGSER + ++ G RL+E IN+SL L VI L+ G+
Sbjct: 257 GEKSQGIL----NLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQK 312
Query: 254 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SPA H+ +T N+L FA
Sbjct: 313 RHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFA 359
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 24/286 (8%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI T+
Sbjct: 55 FDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTI 113
Query: 89 ADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXX 136
+ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 114 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 173
Query: 137 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 196
L+ ++ +L R T NE SSRSH I + + S + G
Sbjct: 174 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-TG 232
Query: 197 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNG 254
+ TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 233 AHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR 288
Query: 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 289 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 24/286 (8%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI T+
Sbjct: 67 FDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTI 125
Query: 89 ADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXX 136
+ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 126 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 185
Query: 137 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 196
L+ ++ +L R T NE SSRSH I + + S + G
Sbjct: 186 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-TG 244
Query: 197 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNG 254
+ TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 245 AHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR 300
Query: 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 301 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 146/286 (51%), Gaps = 24/286 (8%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI T+
Sbjct: 56 FDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTI 114
Query: 89 ADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXX 136
+ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 137 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 196
L+ ++ +L R T NE SSRSH I + + S + G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-TG 233
Query: 197 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNG 254
+ TL N VDLAGS R + + G RL+E +IN+SL L VI L +
Sbjct: 234 AHSYGTL----NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR 289
Query: 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 146/286 (51%), Gaps = 24/286 (8%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI T+
Sbjct: 56 FDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTI 114
Query: 89 ADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXX 136
+ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 137 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 196
L+ ++ +L R T NE SSRSH I + + S + G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK-TG 233
Query: 197 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNG 254
+ TL N VDLAGSER + + G RL+E +I +SL L VI L +
Sbjct: 234 AHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR 289
Query: 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 146/286 (51%), Gaps = 24/286 (8%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI T+
Sbjct: 56 FDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTI 114
Query: 89 ADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRLL-----DDPXX 136
+ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 137 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 196
L+ ++ +L R T NE SS SH I + + S + G
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-TG 233
Query: 197 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNG 254
+ TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 234 AHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR 289
Query: 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 137/293 (46%), Gaps = 34/293 (11%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG---------- 82
DRVF +V+E+ A + S + G IFAYGQT SGKT+TM G
Sbjct: 87 FDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEG 145
Query: 83 ITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-------TPLRLLDD 133
+ + +F + + F A +EIYNE +RDLL+T +R
Sbjct: 146 LIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGP 205
Query: 134 PXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 193
+ + LL + R + T NE+SSRSH + +L I
Sbjct: 206 GSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS----- 260
Query: 194 FLGKENSTTL--SASVNFVDLAGSERASQALSTGA----RLKEGCHINRSLLTLSTVIRK 247
G+ +S L A ++ VDLAGSER L+ G RL+E IN SL TL VI
Sbjct: 261 --GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 248 LSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
LS + H+ YR+SKLT +LQ LGG+A+ + +SP +V ++ N+L FA
Sbjct: 319 LSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFA 370
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 26/288 (9%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTV 88
D +F + +++E+ +++ S + G N IFAYGQT SGKTYTM G+ T+
Sbjct: 57 FDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTL 115
Query: 89 ADIFDYIHRHEERA--FVLKFSAMEIYNEAIRDLL----STDNTPLRLLDDPXXXXXXXX 142
+ IF + +ER + ++ +EIYNE I DLL S DN L
Sbjct: 116 SHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHE 175
Query: 143 XXXXILKDWNHLK--------ELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 194
+ + +K +L R T NE+SSRSH + M+ + R
Sbjct: 176 KQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV--FMVHINGRNL 233
Query: 195 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 254
E S +N VDLAGSER + + TG RL+E +IN+SL L VI L+ G
Sbjct: 234 HTGETS---QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAG 290
Query: 255 --HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
+I +R+SKLT +LQ L G+++T + + P +H+ +T N+L FA
Sbjct: 291 KRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFA 338
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 143/293 (48%), Gaps = 44/293 (15%)
Query: 32 LIDRVFWGDCSTTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMTG-------- 82
++D+VF VYE+ K + + + +G S FAYGQT SGKTYTM G
Sbjct: 53 IVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSD 112
Query: 83 ---ITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXX 136
I + DIF +++ +++ + + F EIY + DLL L
Sbjct: 113 TPGIFQYAAGDIFTFLNIYDKDNTKGIFISF--YEIYCGKLYDLLQKRKMVAAL------ 164
Query: 137 XXXXXXXXXXILKDWNHLKEL------LSICEAQ--RRIGETLLNEKSSRSHQIIRLMIE 188
++KD L+ L L + + R+IG N++SSRSH I+ + ++
Sbjct: 165 ---ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK 221
Query: 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRK 247
N T + F+DLAGSER + +S + + +G +INRSLL L IR
Sbjct: 222 DI--------NKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRA 273
Query: 248 LSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 300
+ +N HI +RDS+LT++L+ G +++ +I +SP S EQT NTL ++
Sbjct: 274 MDSDKN-HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYS 325
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 140/291 (48%), Gaps = 28/291 (9%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIF 92
D F S VY A+ + ++ G ++ FAYGQT SGKT+TM G +
Sbjct: 105 FDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNAS 164
Query: 93 DYIHRHEER-AFVLK-------------FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 138
I+ R F+LK + EIYN + DLL+ LR+L+D
Sbjct: 165 KGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQV 223
Query: 139 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 198
++ + + +++ + A R G+T N SSRSH ++++ + R
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR------ 277
Query: 199 NSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHIN 257
+ + VDLAG+ER + S + + EG IN+SLL L IR L + + H
Sbjct: 278 ----MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTP 332
Query: 258 YRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 307
+R+SKLT++L+ +G N+RT +I T+SP S E T NTL +A KE++
Sbjct: 333 FRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 28/291 (9%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------ 80
D F S VY A+ + ++ G ++ FAYGQT SGKT+TM
Sbjct: 125 FDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNAS 184
Query: 81 TGITECTVADIFDYIHRHEERAFVLK--FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 138
GI D+F ++ R L+ + EIYN + DLL+ LR+L+D
Sbjct: 185 KGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQV 243
Query: 139 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 198
++ + + +++++ A R G+T N SSRSH ++++ + R
Sbjct: 244 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR------ 297
Query: 199 NSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHIN 257
L + VDLAG+ER + S + + EG IN+SLL L IR L + + H
Sbjct: 298 ----LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTP 352
Query: 258 YRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 307
+R+SKLT++L+ +G N+RT +I +SP S E T NTL +A KE++
Sbjct: 353 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 28/291 (9%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------ 80
D F S VY A+ + ++ G ++ FAYGQT SGKT+TM
Sbjct: 53 FDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNAS 112
Query: 81 TGITECTVADIFDYIHRHEERAFVLK--FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXX 138
GI D+F ++ R L+ + EIYN + DLL+ LR+L+D
Sbjct: 113 KGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQV 171
Query: 139 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 198
++ + + +++++ A R G+T N SSRSH ++++ + R
Sbjct: 172 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR------ 225
Query: 199 NSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHIN 257
L + VDLAG+ER + S + + EG IN+SLL L IR L + + H
Sbjct: 226 ----LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTP 280
Query: 258 YRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 307
+R+SKLT++L+ +G N+RT +I +SP S E T NTL +A KE++
Sbjct: 281 FRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 138/291 (47%), Gaps = 30/291 (10%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------ 80
D F VY A+ + ++ ++ FAYGQT SGKT+TM
Sbjct: 143 FDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCS 202
Query: 81 TGITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDNTPLRLLDDPXXXX 138
GI D+F + + + L+ A EIY+ + DLL+ T LR+L+D
Sbjct: 203 KGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR-KTKLRVLEDGKQQV 261
Query: 139 XXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 198
+K + +L+ I + R G+T N SSRSH + ++++ +
Sbjct: 262 QVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------ 315
Query: 199 NSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNG-HI 256
L + +DLAG+ER + S + + EG IN+SLL L IR L GRN H
Sbjct: 316 ----LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKPHT 369
Query: 257 NYRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
+R SKLT++L+ +G N+RT +I T+SP + E T NTL +A KE+
Sbjct: 370 PFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Query: 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------T 81
++ DRV + + QVY AK+I V+ G N +IFAYGQTSSGKT+TM
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 82 GITECTVADIFDYIHRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 140
GI DIFD+I+ +E F +K S EIY + IRDLL T L + +D
Sbjct: 106 GIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYV 165
Query: 141 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 200
+ + +++ +A R + T +NE SSRSH I + I+ E
Sbjct: 166 KGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE-----NVETE 220
Query: 201 TTLSASVNFVDLAGSERA 218
LS + VDLAGSE+
Sbjct: 221 KKLSGKLYLVDLAGSEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 129/289 (44%), Gaps = 33/289 (11%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------ 80
D F S ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 65 FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEH 124
Query: 81 TGITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXX 137
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 125 LGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPMVA 178
Query: 138 XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 197
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 179 ARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------- 231
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G I
Sbjct: 232 ----THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IP 286
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306
YRDS LT +LQ L + + +SP + + +T +TL F AK++
Sbjct: 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 127/287 (44%), Gaps = 33/287 (11%)
Query: 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------ 80
D F S ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 65 FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEH 124
Query: 81 TGITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXX 137
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 125 LGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPMVA 178
Query: 138 XXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 197
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 179 ARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------- 231
Query: 198 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G I
Sbjct: 232 ----THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IP 286
Query: 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304
YRDS LT +LQ L + + +SP + + +T +TL F AK
Sbjct: 287 YRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 235 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTR 294
N+SL L VI L++G H+ YRDSK+TR+LQ LGGN RT I+ SP+ + +T+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 295 NTLLFACCAKEVTTKAQVNVVMS-----------------DKALVKHLQKELAR 331
+TL+F AK + VN+ ++ K++++HL+ EL R
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 233 HINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 292
+IN+SL L VI L++G H+ YRDSK+TR+LQ L GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 293 TRNTLLFACCAKEVTTKAQVNV 314
T++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 334 SELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDS 393
+ +R P P S D L+KKD+ +++ +R+ S +L ++G +D
Sbjct: 252 TSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRK--------ASETPELKGILGYTEDP 303
Query: 394 RQETGRNHNSHKQVSDIWE 412
+ NSH + D E
Sbjct: 304 IVSSDIKGNSHSSIVDGLE 322
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 563 NGFTYGALEQRLNNVQKTIESLVSPYPD 590
NG ALEQ NV+KT E L +PD
Sbjct: 69 NGKAKEALEQARQNVEKTAEELRKAHPD 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,216,460
Number of Sequences: 62578
Number of extensions: 926282
Number of successful extensions: 2290
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 81
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)