Query 002455
Match_columns 920
No_of_seqs 332 out of 1824
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:18:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11995 DUF3490: Domain of un 100.0 2.1E-89 4.6E-94 664.7 13.3 161 742-902 1-161 (161)
2 KOG0245 Kinesin-like protein [ 100.0 1.7E-82 3.6E-87 741.1 27.7 364 26-391 44-446 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 2.6E-82 5.5E-87 726.6 23.1 309 28-339 51-368 (574)
4 KOG0242 Kinesin-like protein [ 100.0 6.2E-81 1.4E-85 736.9 27.1 352 28-391 52-411 (675)
5 KOG0243 Kinesin-like protein [ 100.0 2.9E-80 6.4E-85 734.9 26.4 311 28-342 94-426 (1041)
6 PLN03188 kinesin-12 family pro 100.0 1.2E-74 2.6E-79 692.3 32.1 316 25-341 128-474 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 9.7E-75 2.1E-79 649.9 27.0 294 29-327 49-352 (607)
8 cd01373 KISc_KLP2_like Kinesin 100.0 1.5E-71 3.3E-76 614.7 29.3 276 28-306 40-337 (337)
9 KOG0241 Kinesin-like protein [ 100.0 2.8E-71 6.1E-76 635.3 27.3 348 25-375 49-418 (1714)
10 cd01370 KISc_KIP3_like Kinesin 100.0 6.7E-71 1.5E-75 609.8 28.2 277 28-306 53-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.4E-69 7.3E-74 597.9 28.2 274 26-304 52-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.1E-69 2E-73 596.3 28.8 287 26-313 45-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.4E-67 3E-72 585.7 29.1 284 27-314 46-351 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 4E-67 8.7E-72 578.4 28.6 279 26-306 45-333 (333)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 4.9E-67 1.1E-71 574.7 28.6 277 27-306 38-321 (321)
16 cd01367 KISc_KIF2_like Kinesin 100.0 3.6E-67 7.8E-72 576.5 25.8 266 28-304 50-322 (322)
17 cd01375 KISc_KIF9_like Kinesin 100.0 1.3E-66 2.9E-71 574.7 28.5 273 28-304 47-334 (334)
18 cd01376 KISc_KID_like Kinesin 100.0 1.5E-66 3.3E-71 570.7 28.8 271 25-304 43-319 (319)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2E-66 4.4E-71 573.6 27.7 280 28-307 39-341 (341)
20 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.7E-66 8.1E-71 568.3 28.1 274 28-306 42-325 (325)
21 cd01366 KISc_C_terminal Kinesi 100.0 6.9E-64 1.5E-68 551.0 29.1 276 26-308 42-328 (329)
22 PF00225 Kinesin: Kinesin moto 100.0 1.4E-64 3.1E-69 556.3 23.5 281 25-306 37-335 (335)
23 smart00129 KISc Kinesin motor, 100.0 3.9E-63 8.5E-68 545.6 29.7 285 26-313 43-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 6.8E-62 1.5E-66 533.6 29.5 276 26-304 42-328 (328)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 3.9E-63 8.5E-68 584.2 20.3 276 30-312 361-646 (670)
26 KOG0244 Kinesin-like protein [ 100.0 1.2E-63 2.5E-68 585.7 10.3 306 29-340 32-350 (913)
27 KOG0246 Kinesin-like protein [ 100.0 5E-61 1.1E-65 537.6 21.8 273 29-311 258-546 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.4E-58 9.4E-63 537.0 24.7 282 28-314 55-344 (568)
29 KOG0247 Kinesin-like protein [ 100.0 2.2E-57 4.7E-62 520.2 26.6 285 26-313 78-443 (809)
30 cd01363 Motor_domain Myosin an 100.0 2.4E-44 5.2E-49 366.9 15.0 173 46-285 8-186 (186)
31 COG5059 KIP1 Kinesin-like prot 96.6 2.4E-05 5.3E-10 93.6 -11.4 209 25-249 349-566 (568)
32 COG0556 UvrB Helicase subunit 94.8 0.049 1.1E-06 64.3 6.3 84 30-118 4-101 (663)
33 PF00308 Bac_DnaA: Bacterial d 94.2 0.025 5.4E-07 60.1 2.1 51 29-82 3-53 (219)
34 PRK06893 DNA replication initi 91.4 0.13 2.8E-06 54.8 2.8 49 29-83 11-59 (229)
35 PRK06620 hypothetical protein; 90.7 0.19 4.1E-06 53.4 3.1 49 29-81 11-62 (214)
36 PRK12377 putative replication 89.8 0.23 5.1E-06 54.1 2.9 54 29-84 69-122 (248)
37 COG2805 PilT Tfp pilus assembl 89.0 0.46 9.9E-06 53.3 4.4 33 50-82 112-144 (353)
38 PRK07952 DNA replication prote 88.6 0.35 7.6E-06 52.6 3.2 54 29-84 67-120 (244)
39 PRK14086 dnaA chromosomal repl 88.6 0.24 5.2E-06 60.3 2.1 52 29-83 283-334 (617)
40 PRK08116 hypothetical protein; 88.5 0.23 4.9E-06 54.5 1.7 52 29-82 80-133 (268)
41 PRK06526 transposase; Provisio 87.4 0.27 5.9E-06 53.6 1.5 48 30-84 72-119 (254)
42 PRK05642 DNA replication initi 87.1 0.48 1E-05 50.8 3.2 48 29-83 14-65 (234)
43 PRK14088 dnaA chromosomal repl 87.0 0.44 9.5E-06 56.0 3.0 50 29-82 100-149 (440)
44 PRK00149 dnaA chromosomal repl 86.6 0.49 1.1E-05 55.4 3.2 52 29-83 117-168 (450)
45 TIGR00362 DnaA chromosomal rep 86.6 0.52 1.1E-05 54.4 3.3 51 29-82 105-155 (405)
46 PRK06835 DNA replication prote 86.4 0.28 6E-06 55.6 0.9 39 45-85 167-205 (329)
47 PRK09087 hypothetical protein; 86.3 0.48 1E-05 50.7 2.6 47 29-81 16-62 (226)
48 PF04851 ResIII: Type III rest 85.7 0.39 8.3E-06 47.5 1.4 31 52-82 13-44 (184)
49 PRK08084 DNA replication initi 85.5 0.69 1.5E-05 49.6 3.3 49 29-83 17-65 (235)
50 PRK14087 dnaA chromosomal repl 85.0 0.61 1.3E-05 55.0 2.9 51 29-82 110-160 (450)
51 COG1474 CDC6 Cdc6-related prot 84.9 1.7 3.8E-05 50.0 6.4 58 46-111 25-82 (366)
52 COG2804 PulE Type II secretory 83.7 0.55 1.2E-05 55.7 1.7 34 49-82 244-277 (500)
53 PRK10884 SH3 domain-containing 83.0 4.2 9.1E-05 43.4 7.8 74 317-390 90-165 (206)
54 PRK08903 DnaA regulatory inact 82.3 1.3 2.8E-05 46.7 3.7 49 29-82 13-61 (227)
55 PRK08939 primosomal protein Dn 82.3 0.76 1.7E-05 51.6 2.1 52 31-83 124-176 (306)
56 PRK08181 transposase; Validate 81.9 1 2.3E-05 49.7 2.9 43 37-84 84-127 (269)
57 COG0593 DnaA ATPase involved i 81.9 1 2.2E-05 52.6 2.9 52 27-81 80-131 (408)
58 TIGR03420 DnaA_homol_Hda DnaA 81.8 1.1 2.4E-05 46.7 3.0 48 29-82 10-57 (226)
59 cd00009 AAA The AAA+ (ATPases 81.3 1.2 2.7E-05 41.3 2.8 27 54-80 10-36 (151)
60 PRK08727 hypothetical protein; 80.2 0.97 2.1E-05 48.4 1.9 47 29-83 14-61 (233)
61 TIGR00631 uvrb excinuclease AB 79.7 1.9 4E-05 53.4 4.3 81 33-118 4-98 (655)
62 PRK00411 cdc6 cell division co 79.4 1.8 3.9E-05 49.2 3.9 36 44-80 36-72 (394)
63 TIGR02928 orc1/cdc6 family rep 79.0 1.8 3.8E-05 48.7 3.6 21 60-80 37-57 (365)
64 cd00046 DEXDc DEAD-like helica 77.4 0.98 2.1E-05 41.5 0.8 17 66-82 3-19 (144)
65 PLN00020 ribulose bisphosphate 76.7 5.9 0.00013 46.1 6.8 69 29-97 110-205 (413)
66 PF05673 DUF815: Protein of un 76.4 2.1 4.5E-05 46.9 3.0 123 31-182 24-154 (249)
67 PF00270 DEAD: DEAD/DEAH box h 75.7 1.8 3.8E-05 42.5 2.1 26 54-81 7-32 (169)
68 PRK06921 hypothetical protein; 75.6 1.9 4.2E-05 47.3 2.6 35 50-84 101-138 (266)
69 PRK12422 chromosomal replicati 74.5 2.6 5.6E-05 49.8 3.4 53 28-83 105-161 (445)
70 PRK03992 proteasome-activating 74.5 2.5 5.5E-05 48.8 3.3 51 30-80 127-182 (389)
71 smart00053 DYNc Dynamin, GTPas 74.0 7.5 0.00016 42.4 6.6 54 147-218 85-138 (240)
72 PTZ00112 origin recognition co 73.9 1.5 3.2E-05 55.6 1.3 22 60-81 778-799 (1164)
73 TIGR02538 type_IV_pilB type IV 72.9 1.6 3.5E-05 52.9 1.3 29 54-82 307-335 (564)
74 smart00382 AAA ATPases associa 72.7 1.6 3.4E-05 40.0 0.8 19 64-82 3-21 (148)
75 TIGR02533 type_II_gspE general 72.6 1.9 4.2E-05 51.4 1.8 29 54-82 233-261 (486)
76 PRK10436 hypothetical protein; 72.6 1.8 3.9E-05 51.3 1.6 29 54-82 209-237 (462)
77 COG1484 DnaC DNA replication p 72.3 2.5 5.5E-05 46.2 2.5 51 30-83 75-125 (254)
78 PF01935 DUF87: Domain of unkn 71.4 1.3 2.8E-05 46.7 0.0 22 66-87 26-47 (229)
79 PF13401 AAA_22: AAA domain; P 71.2 1.5 3.3E-05 41.4 0.4 18 63-80 4-21 (131)
80 TIGR01420 pilT_fam pilus retra 71.2 2.3 4.9E-05 48.4 1.9 30 53-82 112-141 (343)
81 KOG0989 Replication factor C, 71.0 3.3 7.1E-05 46.8 3.0 44 37-80 30-74 (346)
82 COG4962 CpaF Flp pilus assembl 70.4 3.7 8E-05 47.0 3.3 27 53-80 164-190 (355)
83 PF12846 AAA_10: AAA-like doma 70.3 1.5 3.2E-05 47.0 0.1 20 63-82 1-20 (304)
84 cd01131 PilT Pilus retraction 70.0 1.9 4.1E-05 45.0 0.8 18 64-81 2-19 (198)
85 PF01695 IstB_IS21: IstB-like 69.4 2.4 5.2E-05 43.8 1.4 21 64-84 48-68 (178)
86 PF04420 CHD5: CHD5-like prote 69.2 30 0.00066 35.5 9.3 66 319-388 39-104 (161)
87 PF13245 AAA_19: Part of AAA d 69.2 2.5 5.5E-05 37.9 1.4 27 55-82 3-29 (76)
88 TIGR02525 plasmid_TraJ plasmid 69.2 2.7 5.9E-05 48.6 1.9 28 54-82 141-168 (372)
89 PF00437 T2SE: Type II/IV secr 69.1 2.1 4.5E-05 46.4 1.0 29 52-81 117-145 (270)
90 TIGR02524 dot_icm_DotB Dot/Icm 68.7 2.8 6E-05 48.2 1.9 25 58-82 129-153 (358)
91 PTZ00454 26S protease regulato 68.3 4 8.8E-05 47.5 3.1 52 29-80 140-196 (398)
92 PRK09183 transposase/IS protei 66.7 2.6 5.7E-05 46.0 1.2 46 33-83 77-122 (259)
93 cd01129 PulE-GspE PulE/GspE Th 66.0 3.3 7.1E-05 45.5 1.7 29 54-82 71-99 (264)
94 COG5008 PilU Tfp pilus assembl 65.9 4.3 9.4E-05 45.2 2.6 31 51-81 115-145 (375)
95 PF13604 AAA_30: AAA domain; P 64.3 3.2 7E-05 43.3 1.2 28 54-81 9-36 (196)
96 TIGR03015 pepcterm_ATPase puta 63.7 4.5 9.7E-05 43.3 2.2 23 59-81 39-61 (269)
97 COG1222 RPT1 ATP-dependent 26S 63.1 6.3 0.00014 45.5 3.3 57 44-100 161-245 (406)
98 PF00448 SRP54: SRP54-type pro 62.7 3.1 6.7E-05 43.7 0.7 17 65-81 3-19 (196)
99 TIGR01241 FtsH_fam ATP-depende 62.4 11 0.00025 44.8 5.5 51 30-81 51-106 (495)
100 PRK13894 conjugal transfer ATP 62.3 5 0.00011 45.5 2.3 29 53-82 139-167 (319)
101 PF00004 AAA: ATPase family as 62.1 3.4 7.4E-05 38.7 0.8 15 66-80 1-15 (132)
102 PRK12402 replication factor C 61.6 6.2 0.00014 43.6 2.9 45 30-82 11-55 (337)
103 PF13086 AAA_11: AAA domain; P 61.0 5 0.00011 41.0 1.9 31 54-85 9-39 (236)
104 TIGR01242 26Sp45 26S proteasom 60.7 3.5 7.6E-05 47.0 0.8 53 29-81 117-174 (364)
105 cd00124 MYSc Myosin motor doma 60.6 69 0.0015 40.1 11.9 36 44-80 67-103 (679)
106 PF01637 Arch_ATPase: Archaeal 60.5 3.8 8.2E-05 42.0 0.9 29 52-80 9-37 (234)
107 cd01382 MYSc_type_VI Myosin mo 60.1 95 0.0021 39.2 13.0 36 45-81 73-109 (717)
108 PF13479 AAA_24: AAA domain 60.0 4.4 9.5E-05 42.8 1.3 20 63-82 3-22 (213)
109 smart00487 DEXDc DEAD-like hel 59.9 5.9 0.00013 38.7 2.1 26 56-82 18-43 (201)
110 TIGR02782 TrbB_P P-type conjug 59.5 4.7 0.0001 45.2 1.5 29 52-81 122-150 (299)
111 PF01580 FtsK_SpoIIIE: FtsK/Sp 59.4 2.6 5.6E-05 43.7 -0.6 19 65-83 40-58 (205)
112 PF13207 AAA_17: AAA domain; P 59.1 4.3 9.3E-05 38.0 0.9 16 65-80 1-16 (121)
113 COG1201 Lhr Lhr-like helicases 59.0 14 0.0003 47.0 5.5 24 55-80 31-54 (814)
114 PRK12723 flagellar biosynthesi 59.0 9.4 0.0002 44.5 3.9 20 63-82 174-193 (388)
115 KOG0727 26S proteasome regulat 59.0 20 0.00043 39.9 5.9 64 36-99 157-248 (408)
116 PF13191 AAA_16: AAA ATPase do 58.3 4.1 8.9E-05 40.6 0.7 32 59-98 20-51 (185)
117 TIGR03499 FlhF flagellar biosy 57.7 9.7 0.00021 42.2 3.6 20 65-84 196-215 (282)
118 PRK13900 type IV secretion sys 57.7 6.2 0.00013 44.9 2.1 29 52-81 150-178 (332)
119 PHA00729 NTP-binding motif con 57.4 9 0.0002 41.6 3.1 35 50-84 4-38 (226)
120 PRK13833 conjugal transfer pro 57.0 7.9 0.00017 44.0 2.8 29 53-82 135-163 (323)
121 PHA02544 44 clamp loader, smal 56.9 7.6 0.00016 42.9 2.6 23 60-82 39-62 (316)
122 PF05970 PIF1: PIF1-like helic 56.9 7.7 0.00017 44.5 2.7 36 41-80 4-39 (364)
123 PF06005 DUF904: Protein of un 56.8 77 0.0017 28.7 8.4 52 321-388 19-70 (72)
124 PF06309 Torsin: Torsin; Inte 56.4 5.4 0.00012 39.6 1.2 25 65-93 54-79 (127)
125 COG1223 Predicted ATPase (AAA+ 56.3 9.6 0.00021 42.5 3.1 17 64-80 152-168 (368)
126 PF03999 MAP65_ASE1: Microtubu 56.2 7.9 0.00017 47.6 2.8 47 743-789 288-336 (619)
127 cd00268 DEADc DEAD-box helicas 55.7 8.1 0.00018 39.5 2.4 22 56-79 31-52 (203)
128 PRK11448 hsdR type I restricti 55.4 6.3 0.00014 51.7 1.8 35 51-86 422-456 (1123)
129 TIGR02903 spore_lon_C ATP-depe 55.2 8.2 0.00018 47.5 2.7 45 29-81 149-193 (615)
130 cd01130 VirB11-like_ATPase Typ 54.3 8 0.00017 39.8 2.1 28 53-81 16-43 (186)
131 PTZ00424 helicase 45; Provisio 54.3 7.5 0.00016 44.3 2.0 26 53-80 57-82 (401)
132 PF13671 AAA_33: AAA domain; P 53.6 5.8 0.00013 38.1 0.9 15 66-80 2-16 (143)
133 PRK11776 ATP-dependent RNA hel 53.0 8.7 0.00019 45.0 2.3 23 55-79 35-57 (460)
134 KOG0739 AAA+-type ATPase [Post 52.4 14 0.00031 41.9 3.7 57 44-100 143-226 (439)
135 PF00910 RNA_helicase: RNA hel 51.7 5.1 0.00011 37.6 0.2 26 66-95 1-26 (107)
136 PF07728 AAA_5: AAA domain (dy 51.7 5.9 0.00013 38.2 0.6 15 66-80 2-16 (139)
137 PF14282 FlxA: FlxA-like prote 51.4 76 0.0016 30.5 8.0 58 319-381 18-75 (106)
138 PF02562 PhoH: PhoH-like prote 51.3 9.2 0.0002 40.8 2.0 44 62-112 18-61 (205)
139 PF07724 AAA_2: AAA domain (Cd 51.0 7.7 0.00017 39.9 1.3 17 64-80 4-20 (171)
140 PRK11637 AmiB activator; Provi 50.6 75 0.0016 37.3 9.5 26 358-383 97-122 (428)
141 PF00063 Myosin_head: Myosin h 50.3 11 0.00025 46.7 2.9 35 45-80 67-102 (689)
142 PRK11192 ATP-dependent RNA hel 50.2 10 0.00022 44.1 2.3 24 55-80 32-55 (434)
143 PRK06547 hypothetical protein; 49.9 15 0.00031 38.0 3.1 29 52-80 4-32 (172)
144 KOG0239 Kinesin (KAR3 subfamil 49.6 4.2 9.2E-05 50.4 -1.0 84 29-123 26-111 (670)
145 PF00580 UvrD-helicase: UvrD/R 49.3 6.3 0.00014 42.5 0.4 20 62-81 12-31 (315)
146 KOG0735 AAA+-type ATPase [Post 49.1 11 0.00024 46.8 2.5 39 61-99 699-760 (952)
147 PF13238 AAA_18: AAA domain; P 48.9 7.6 0.00017 36.1 0.9 16 66-81 1-16 (129)
148 KOG0651 26S proteasome regulat 48.6 7.4 0.00016 44.3 0.8 74 27-100 125-226 (388)
149 PRK13851 type IV secretion sys 48.6 7 0.00015 44.8 0.7 28 53-81 153-180 (344)
150 COG5019 CDC3 Septin family pro 48.5 27 0.00058 40.5 5.2 83 60-162 20-113 (373)
151 PF03215 Rad17: Rad17 cell cyc 48.5 11 0.00025 45.4 2.4 30 51-80 31-62 (519)
152 PF06048 DUF927: Domain of unk 47.9 17 0.00036 40.4 3.4 30 50-80 181-210 (286)
153 COG3883 Uncharacterized protei 47.8 36 0.00078 37.9 5.8 67 321-389 39-105 (265)
154 PF12325 TMF_TATA_bd: TATA ele 47.8 38 0.00083 33.4 5.5 34 358-391 62-95 (120)
155 TIGR00618 sbcc exonuclease Sbc 47.5 13 0.00028 48.4 2.9 24 64-87 27-57 (1042)
156 PRK04837 ATP-dependent RNA hel 47.4 12 0.00025 43.5 2.2 24 55-80 39-62 (423)
157 TIGR00614 recQ_fam ATP-depende 46.8 13 0.00028 44.0 2.4 25 54-80 19-43 (470)
158 PRK13764 ATPase; Provisional 46.7 9.9 0.00022 46.7 1.6 20 63-82 257-276 (602)
159 CHL00081 chlI Mg-protoporyphyr 46.6 8.5 0.00019 44.3 0.9 45 29-81 12-56 (350)
160 PLN03025 replication factor C 46.2 14 0.0003 41.4 2.5 23 61-83 32-54 (319)
161 COG1419 FlhF Flagellar GTP-bin 46.2 16 0.00034 42.9 3.0 38 44-81 180-221 (407)
162 TIGR00348 hsdR type I site-spe 45.8 14 0.00029 46.0 2.5 34 50-84 246-284 (667)
163 PF06414 Zeta_toxin: Zeta toxi 45.8 9.5 0.0002 39.7 1.0 21 61-81 13-33 (199)
164 TIGR02881 spore_V_K stage V sp 45.7 21 0.00046 38.7 3.8 20 63-82 42-61 (261)
165 PRK10590 ATP-dependent RNA hel 45.5 14 0.0003 43.6 2.4 24 55-80 32-55 (456)
166 PF02388 FemAB: FemAB family; 45.3 61 0.0013 37.9 7.7 47 236-285 194-240 (406)
167 KOG3990 Uncharacterized conser 45.1 55 0.0012 36.1 6.6 64 320-392 225-295 (305)
168 PRK14961 DNA polymerase III su 44.9 14 0.00031 42.2 2.4 42 32-81 14-56 (363)
169 KOG0336 ATP-dependent RNA heli 44.6 14 0.0003 43.4 2.1 57 21-82 209-278 (629)
170 cd01127 TrwB Bacterial conjuga 44.4 7.7 0.00017 45.2 0.1 21 63-83 42-62 (410)
171 TIGR01650 PD_CobS cobaltochela 44.1 14 0.00029 42.3 2.0 60 19-80 21-81 (327)
172 PF07693 KAP_NTPase: KAP famil 44.1 39 0.00085 37.2 5.6 56 50-113 4-63 (325)
173 PRK14722 flhF flagellar biosyn 43.7 10 0.00022 44.1 0.9 21 63-83 137-157 (374)
174 PRK00440 rfc replication facto 43.7 18 0.00039 39.6 2.9 22 60-81 35-56 (319)
175 TIGR00376 DNA helicase, putati 43.3 13 0.00028 46.0 1.8 20 65-84 175-194 (637)
176 COG0464 SpoVK ATPases of the A 43.1 29 0.00064 41.2 4.7 71 26-96 234-332 (494)
177 PRK11331 5-methylcytosine-spec 42.9 16 0.00035 43.5 2.4 26 271-300 320-345 (459)
178 TIGR01243 CDC48 AAA family ATP 42.9 25 0.00054 44.1 4.2 52 29-80 173-229 (733)
179 TIGR02788 VirB11 P-type DNA tr 42.9 17 0.00036 40.8 2.5 30 51-81 133-162 (308)
180 COG2433 Uncharacterized conser 42.8 57 0.0012 40.1 6.8 31 355-385 479-509 (652)
181 PF05496 RuvB_N: Holliday junc 42.7 31 0.00068 37.7 4.4 40 39-79 25-66 (233)
182 TIGR02902 spore_lonB ATP-depen 42.5 18 0.00039 43.8 2.8 43 29-79 60-102 (531)
183 PF10236 DAP3: Mitochondrial r 41.6 16 0.00035 41.1 2.1 27 57-83 17-43 (309)
184 CHL00176 ftsH cell division pr 41.0 25 0.00054 43.6 3.8 18 64-81 217-234 (638)
185 PTZ00361 26 proteosome regulat 41.0 19 0.00042 42.6 2.7 16 65-80 219-234 (438)
186 KOG0730 AAA+-type ATPase [Post 41.0 19 0.00042 44.4 2.7 36 64-99 469-527 (693)
187 smart00242 MYSc Myosin. Large 40.6 24 0.00052 44.1 3.5 36 44-80 73-109 (677)
188 PRK13342 recombination factor 40.4 15 0.00032 42.9 1.6 28 54-81 27-54 (413)
189 KOG0729 26S proteasome regulat 40.3 19 0.00041 40.3 2.3 39 60-98 206-269 (435)
190 TIGR00635 ruvB Holliday juncti 40.3 19 0.00042 39.5 2.5 39 42-81 8-48 (305)
191 KOG0335 ATP-dependent RNA heli 40.1 11 0.00023 45.0 0.4 16 66-81 114-129 (482)
192 PRK10416 signal recognition pa 40.1 26 0.00056 39.8 3.4 18 64-81 115-132 (318)
193 PRK04195 replication factor C 39.9 13 0.00027 44.3 1.0 30 51-80 26-56 (482)
194 PRK10536 hypothetical protein; 39.6 18 0.00038 40.2 2.0 42 30-81 51-92 (262)
195 PF05729 NACHT: NACHT domain 38.9 14 0.00031 35.7 1.1 18 65-82 2-19 (166)
196 PRK14974 cell division protein 38.8 37 0.00081 38.9 4.5 20 63-82 140-159 (336)
197 COG1219 ClpX ATP-dependent pro 38.8 14 0.0003 42.3 1.1 17 64-80 98-114 (408)
198 cd01126 TraG_VirD4 The TraG/Tr 38.7 14 0.0003 42.4 1.0 21 66-88 2-22 (384)
199 KOG2373 Predicted mitochondria 38.6 22 0.00048 41.0 2.6 29 52-81 260-291 (514)
200 smart00763 AAA_PrkA PrkA AAA d 38.5 34 0.00073 39.7 4.1 41 35-80 52-95 (361)
201 PF12775 AAA_7: P-loop contain 38.4 17 0.00038 40.1 1.7 18 63-80 33-50 (272)
202 CHL00195 ycf46 Ycf46; Provisio 38.4 29 0.00063 41.8 3.7 17 64-80 260-276 (489)
203 PRK00771 signal recognition pa 38.1 38 0.00082 40.2 4.5 20 63-82 95-114 (437)
204 KOG1962 B-cell receptor-associ 38.0 1.3E+02 0.0027 32.8 7.9 60 324-389 131-190 (216)
205 PRK11634 ATP-dependent RNA hel 38.0 19 0.00041 44.5 2.1 25 54-80 36-60 (629)
206 KOG0340 ATP-dependent RNA heli 37.9 30 0.00066 40.1 3.5 27 53-81 36-62 (442)
207 cd01120 RecA-like_NTPases RecA 37.9 13 0.00029 35.6 0.6 17 66-82 2-18 (165)
208 PF01486 K-box: K-box region; 37.8 2.2E+02 0.0048 26.7 8.8 69 319-388 18-99 (100)
209 PLN00206 DEAD-box ATP-dependen 37.7 25 0.00054 42.2 3.0 26 53-80 150-175 (518)
210 cd01384 MYSc_type_XI Myosin mo 37.6 29 0.00063 43.4 3.6 36 45-81 70-106 (674)
211 PF10205 KLRAQ: Predicted coil 37.6 1.1E+02 0.0023 29.7 6.5 43 347-389 30-72 (102)
212 PF09726 Macoilin: Transmembra 37.3 1.1E+02 0.0023 38.8 8.3 73 320-392 418-502 (697)
213 TIGR01243 CDC48 AAA family ATP 37.1 30 0.00066 43.4 3.7 17 64-80 488-504 (733)
214 PRK11637 AmiB activator; Provi 37.0 1.6E+02 0.0034 34.7 9.3 31 358-388 90-120 (428)
215 PF10412 TrwB_AAD_bind: Type I 37.0 10 0.00022 44.0 -0.4 18 65-82 17-34 (386)
216 PF08317 Spc7: Spc7 kinetochor 36.9 1.8E+02 0.0038 33.1 9.4 37 352-388 232-268 (325)
217 TIGR01817 nifA Nif-specific re 36.6 19 0.00042 43.2 1.9 46 29-80 191-236 (534)
218 TIGR01389 recQ ATP-dependent D 36.6 20 0.00043 43.7 2.0 26 53-80 20-45 (591)
219 cd01383 MYSc_type_VIII Myosin 36.5 32 0.0007 43.0 3.8 35 45-80 74-109 (677)
220 TIGR02640 gas_vesic_GvpN gas v 36.4 34 0.00074 37.4 3.6 28 51-80 11-38 (262)
221 KOG0354 DEAD-box like helicase 36.3 26 0.00056 44.0 2.8 27 51-80 67-93 (746)
222 KOG2543 Origin recognition com 36.2 17 0.00036 42.5 1.2 38 64-114 31-68 (438)
223 PRK04406 hypothetical protein; 36.2 3.4E+02 0.0073 24.7 9.3 51 323-389 7-57 (75)
224 PF00735 Septin: Septin; Inte 36.1 16 0.00034 40.8 0.9 20 60-79 1-20 (281)
225 cd01385 MYSc_type_IX Myosin mo 36.0 31 0.00067 43.2 3.5 37 44-81 75-112 (692)
226 PRK00080 ruvB Holliday junctio 35.8 19 0.00041 40.4 1.5 18 64-81 52-69 (328)
227 PRK14962 DNA polymerase III su 35.6 24 0.00052 42.2 2.4 43 30-80 10-53 (472)
228 PF13476 AAA_23: AAA domain; P 35.6 17 0.00038 36.4 1.1 18 64-81 20-37 (202)
229 PRK10865 protein disaggregatio 35.6 25 0.00055 45.1 2.7 46 30-80 564-615 (857)
230 PRK04328 hypothetical protein; 35.4 26 0.00057 38.0 2.5 28 52-79 9-39 (249)
231 PHA02244 ATPase-like protein 35.3 35 0.00077 39.8 3.6 28 52-81 110-137 (383)
232 TIGR01618 phage_P_loop phage n 35.1 15 0.00033 39.6 0.6 20 63-82 12-31 (220)
233 PF07795 DUF1635: Protein of u 35.0 94 0.002 33.7 6.4 36 349-384 25-60 (214)
234 TIGR02237 recomb_radB DNA repa 35.0 23 0.00049 36.7 1.8 25 56-80 2-29 (209)
235 KOG4348 Adaptor protein CMS/SE 35.0 1.5E+02 0.0032 35.3 8.3 68 309-388 558-625 (627)
236 PRK01297 ATP-dependent RNA hel 34.9 23 0.0005 41.9 2.1 26 53-80 116-141 (475)
237 smart00489 DEXDc3 DEAD-like he 34.9 37 0.00079 37.9 3.5 29 51-81 17-45 (289)
238 smart00488 DEXDc2 DEAD-like he 34.9 37 0.00079 37.9 3.5 29 51-81 17-45 (289)
239 KOG0953 Mitochondrial RNA heli 34.8 28 0.00062 42.3 2.7 33 65-97 193-237 (700)
240 cd02021 GntK Gluconate kinase 34.8 17 0.00036 35.6 0.8 15 66-80 2-16 (150)
241 cd01378 MYSc_type_I Myosin mot 34.6 35 0.00076 42.6 3.7 36 44-80 67-103 (674)
242 PF12774 AAA_6: Hydrolytic ATP 34.3 60 0.0013 35.2 5.0 33 67-99 36-85 (231)
243 PF02456 Adeno_IVa2: Adenoviru 34.3 16 0.00035 41.6 0.6 16 66-81 90-105 (369)
244 PLN03137 ATP-dependent DNA hel 34.1 30 0.00066 45.5 3.1 28 51-80 465-492 (1195)
245 cd01381 MYSc_type_VII Myosin m 34.0 39 0.00084 42.3 3.9 37 44-81 67-104 (671)
246 PRK09270 nucleoside triphospha 34.0 44 0.00096 35.5 3.9 37 44-80 13-50 (229)
247 PRK11057 ATP-dependent DNA hel 33.8 26 0.00056 43.0 2.4 25 54-80 33-57 (607)
248 PRK05703 flhF flagellar biosyn 33.8 18 0.00039 42.6 0.9 19 65-83 223-241 (424)
249 PRK06696 uridine kinase; Valid 33.8 41 0.00089 35.6 3.6 35 45-80 5-39 (223)
250 cd01387 MYSc_type_XV Myosin mo 33.7 38 0.00082 42.4 3.7 37 44-81 68-105 (677)
251 PRK00131 aroK shikimate kinase 33.6 20 0.00044 35.3 1.2 17 64-80 5-21 (175)
252 PRK04537 ATP-dependent RNA hel 33.6 26 0.00057 42.8 2.3 24 55-80 40-63 (572)
253 TIGR03158 cas3_cyano CRISPR-as 33.5 27 0.00058 39.9 2.3 26 55-80 6-31 (357)
254 cd01377 MYSc_type_II Myosin mo 33.5 38 0.00082 42.5 3.7 36 44-80 72-108 (693)
255 COG0419 SbcC ATPase involved i 33.1 31 0.00068 44.4 3.0 22 65-86 27-55 (908)
256 cd01850 CDC_Septin CDC/Septin. 33.0 22 0.00047 39.4 1.4 21 60-80 1-21 (276)
257 KOG0726 26S proteasome regulat 32.9 45 0.00098 37.9 3.8 36 65-100 221-279 (440)
258 cd01123 Rad51_DMC1_radA Rad51_ 32.8 31 0.00067 36.3 2.5 29 52-80 5-36 (235)
259 PRK10820 DNA-binding transcrip 32.8 24 0.00051 42.6 1.7 46 29-80 199-244 (520)
260 KOG0926 DEAH-box RNA helicase 32.7 24 0.00051 44.6 1.7 18 63-80 271-288 (1172)
261 COG4096 HsdR Type I site-speci 32.7 34 0.00073 43.4 3.0 42 45-87 167-209 (875)
262 PRK05580 primosome assembly pr 32.7 16 0.00035 45.5 0.3 37 37-80 143-179 (679)
263 PRK06995 flhF flagellar biosyn 32.6 19 0.00041 43.3 0.9 19 64-82 257-275 (484)
264 TIGR01359 UMP_CMP_kin_fam UMP- 32.6 20 0.00044 36.1 1.0 15 66-80 2-16 (183)
265 PRK14723 flhF flagellar biosyn 32.6 43 0.00094 42.5 4.0 18 64-81 186-203 (767)
266 KOG0993 Rab5 GTPase effector R 32.5 1.7E+02 0.0037 34.5 8.2 68 322-389 116-187 (542)
267 cd01380 MYSc_type_V Myosin mot 32.3 39 0.00084 42.4 3.5 36 45-81 68-104 (691)
268 PF13555 AAA_29: P-loop contai 32.3 21 0.00045 31.3 0.8 15 66-80 26-40 (62)
269 PF07106 TBPIP: Tat binding pr 32.2 2.4E+02 0.0052 28.8 8.8 13 239-251 33-45 (169)
270 COG0606 Predicted ATPase with 32.2 32 0.0007 41.2 2.7 35 51-86 187-224 (490)
271 PRK06067 flagellar accessory p 32.2 32 0.00069 36.5 2.4 30 51-80 10-42 (234)
272 PF13173 AAA_14: AAA domain 32.0 21 0.00045 34.4 0.9 17 65-81 4-20 (128)
273 PHA02653 RNA helicase NPH-II; 31.7 38 0.00083 42.3 3.3 25 53-79 171-195 (675)
274 PRK10917 ATP-dependent DNA hel 31.7 34 0.00075 42.6 3.0 39 38-80 261-299 (681)
275 PF08826 DMPK_coil: DMPK coile 31.6 2.7E+02 0.0059 24.5 7.5 31 348-378 30-60 (61)
276 PRK07261 topology modulation p 31.1 22 0.00048 36.3 1.0 15 66-80 3-17 (171)
277 PF02367 UPF0079: Uncharacteri 31.1 25 0.00054 34.7 1.3 32 50-83 4-35 (123)
278 KOG1803 DNA helicase [Replicat 30.9 20 0.00043 43.9 0.7 23 64-86 202-224 (649)
279 PRK13341 recombination factor 30.8 31 0.00068 43.5 2.4 48 30-82 24-71 (725)
280 PRK13767 ATP-dependent helicas 30.8 30 0.00065 44.5 2.3 23 56-80 42-64 (876)
281 PF02534 T4SS-DNA_transf: Type 30.7 33 0.00072 40.3 2.5 23 64-88 45-67 (469)
282 TIGR02030 BchI-ChlI magnesium 30.7 29 0.00064 39.7 2.0 31 51-81 13-43 (337)
283 CHL00181 cbbX CbbX; Provisiona 30.6 47 0.001 37.0 3.5 16 66-81 62-77 (287)
284 PF14257 DUF4349: Domain of un 30.4 2.7E+02 0.0059 30.4 9.3 96 275-389 94-194 (262)
285 PRK04296 thymidine kinase; Pro 30.4 19 0.0004 37.5 0.3 22 65-86 4-25 (190)
286 TIGR00064 ftsY signal recognit 30.3 59 0.0013 36.0 4.2 19 64-82 73-91 (272)
287 PRK15424 propionate catabolism 30.0 30 0.00064 42.2 2.0 46 29-80 214-259 (538)
288 cd01428 ADK Adenylate kinase ( 30.0 24 0.00052 35.8 1.0 15 66-80 2-16 (194)
289 TIGR01313 therm_gnt_kin carboh 29.9 20 0.00043 35.6 0.4 14 66-79 1-14 (163)
290 PRK02119 hypothetical protein; 29.8 4.2E+02 0.0091 23.9 8.9 51 323-389 5-55 (73)
291 TIGR03819 heli_sec_ATPase heli 29.7 33 0.00072 39.3 2.2 30 51-81 167-196 (340)
292 COG0630 VirB11 Type IV secreto 29.5 21 0.00046 40.3 0.6 18 64-81 144-161 (312)
293 TIGR02329 propionate_PrpR prop 29.4 29 0.00064 42.0 1.8 46 29-80 207-252 (526)
294 PRK11131 ATP-dependent RNA hel 29.3 38 0.00083 45.2 2.9 23 57-80 84-106 (1294)
295 cd00464 SK Shikimate kinase (S 29.2 24 0.00051 34.3 0.8 16 65-80 1-16 (154)
296 COG3829 RocR Transcriptional r 29.2 34 0.00075 41.5 2.2 42 29-76 240-281 (560)
297 TIGR03817 DECH_helic helicase/ 29.1 33 0.00073 43.2 2.3 25 54-80 44-68 (742)
298 PF12329 TMF_DNA_bd: TATA elem 29.1 4.3E+02 0.0094 23.9 9.3 34 354-387 37-70 (74)
299 PF06745 KaiC: KaiC; InterPro 29.1 32 0.00069 36.2 1.8 26 54-79 7-35 (226)
300 TIGR02880 cbbX_cfxQ probable R 29.1 23 0.0005 39.3 0.8 16 65-80 60-75 (284)
301 COG1125 OpuBA ABC-type proline 29.1 23 0.00051 39.5 0.8 13 68-80 32-44 (309)
302 COG3074 Uncharacterized protei 29.1 4.2E+02 0.0092 24.1 8.3 58 321-387 19-76 (79)
303 PRK15429 formate hydrogenlyase 28.8 32 0.00069 42.8 2.0 43 31-79 373-415 (686)
304 PRK15483 type III restriction- 28.8 73 0.0016 41.5 5.1 12 71-82 67-78 (986)
305 PHA02624 large T antigen; Prov 28.7 44 0.00095 41.4 3.0 30 53-82 419-450 (647)
306 PRK06305 DNA polymerase III su 28.7 36 0.00079 40.4 2.3 42 32-81 15-57 (451)
307 COG1126 GlnQ ABC-type polar am 28.5 26 0.00056 38.3 0.9 23 58-80 17-45 (240)
308 PRK08118 topology modulation p 28.5 26 0.00057 35.7 1.0 14 66-79 4-17 (167)
309 TIGR01360 aden_kin_iso1 adenyl 28.4 31 0.00067 34.7 1.5 16 65-80 5-20 (188)
310 PF15619 Lebercilin: Ciliary p 28.3 1.9E+02 0.0041 30.8 7.3 51 318-370 59-109 (194)
311 PTZ00110 helicase; Provisional 28.3 37 0.0008 41.2 2.4 24 55-80 161-184 (545)
312 COG2256 MGS1 ATPase related to 28.2 25 0.00055 41.2 0.9 45 30-79 20-64 (436)
313 KOG3859 Septins (P-loop GTPase 28.0 35 0.00076 38.4 1.9 24 57-80 36-59 (406)
314 cd02020 CMPK Cytidine monophos 28.0 28 0.0006 33.4 1.0 15 66-80 2-16 (147)
315 PRK09361 radB DNA repair and r 27.9 48 0.001 34.9 2.9 31 51-81 8-41 (225)
316 PRK10867 signal recognition pa 27.7 66 0.0014 38.2 4.2 19 63-81 100-118 (433)
317 TIGR02746 TraC-F-type type-IV 27.6 20 0.00044 45.1 -0.0 21 63-83 430-450 (797)
318 PF00931 NB-ARC: NB-ARC domain 27.5 60 0.0013 34.9 3.6 30 51-80 5-36 (287)
319 TIGR03238 dnd_assoc_3 dnd syst 27.4 36 0.00078 41.0 2.0 27 55-81 18-50 (504)
320 PRK14964 DNA polymerase III su 27.3 35 0.00076 41.1 1.9 24 57-80 28-52 (491)
321 PF08614 ATG16: Autophagy prot 27.3 4.5E+02 0.0097 27.6 9.9 57 319-384 115-171 (194)
322 PRK08233 hypothetical protein; 27.3 28 0.00061 34.8 1.0 16 65-80 5-20 (182)
323 PRK12724 flagellar biosynthesi 27.3 57 0.0012 38.8 3.6 18 64-81 224-241 (432)
324 KOG2655 Septin family protein 27.2 2E+02 0.0044 33.6 7.9 23 58-80 16-38 (366)
325 PRK11664 ATP-dependent RNA hel 27.2 45 0.00097 42.6 2.9 28 51-80 10-37 (812)
326 cd01379 MYSc_type_III Myosin m 27.2 53 0.0011 41.0 3.5 36 45-81 68-104 (653)
327 TIGR02322 phosphon_PhnN phosph 27.2 27 0.00059 35.2 0.9 17 65-81 3-19 (179)
328 PF05529 Bap31: B-cell recepto 27.1 1.9E+02 0.0042 30.1 7.1 33 354-386 158-190 (192)
329 PRK15422 septal ring assembly 26.9 4.6E+02 0.01 24.4 8.4 29 360-388 49-77 (79)
330 KOG1514 Origin recognition com 26.9 67 0.0015 40.3 4.1 30 54-83 411-442 (767)
331 PRK01172 ski2-like helicase; P 26.9 41 0.0009 41.6 2.5 22 57-80 33-54 (674)
332 KOG4196 bZIP transcription fac 26.9 2.3E+02 0.005 28.6 7.0 62 326-387 46-118 (135)
333 TIGR02397 dnaX_nterm DNA polym 26.9 56 0.0012 36.6 3.3 24 57-80 29-53 (355)
334 cd01983 Fer4_NifH The Fer4_Nif 26.7 29 0.00064 30.0 0.9 17 66-82 2-18 (99)
335 PRK00295 hypothetical protein; 26.7 4.6E+02 0.01 23.3 8.3 28 356-383 25-52 (68)
336 PF15186 TEX13: Testis-express 26.4 76 0.0016 32.5 3.7 43 785-832 84-126 (152)
337 cd01124 KaiC KaiC is a circadi 26.4 29 0.00064 34.8 0.9 15 66-80 2-16 (187)
338 TIGR03744 traC_PFL_4706 conjug 26.4 22 0.00048 45.7 0.1 23 62-84 474-496 (893)
339 PRK12726 flagellar biosynthesi 26.3 29 0.00063 40.8 1.0 20 64-83 207-226 (407)
340 PRK11889 flhF flagellar biosyn 26.3 28 0.00061 41.1 0.8 19 64-82 242-260 (436)
341 cd01386 MYSc_type_XVIII Myosin 26.2 56 0.0012 41.6 3.4 36 44-80 67-103 (767)
342 PRK14955 DNA polymerase III su 26.1 42 0.0009 39.0 2.2 43 30-80 12-55 (397)
343 TIGR00643 recG ATP-dependent D 26.0 48 0.001 40.9 2.8 40 37-80 234-273 (630)
344 PF00485 PRK: Phosphoribulokin 25.9 28 0.00061 35.9 0.7 15 66-80 2-16 (194)
345 PRK14531 adenylate kinase; Pro 25.9 31 0.00068 35.3 1.0 16 65-80 4-19 (183)
346 PRK14721 flhF flagellar biosyn 25.8 30 0.00065 40.9 1.0 20 63-82 191-210 (420)
347 PRK00736 hypothetical protein; 25.8 3.9E+02 0.0085 23.8 7.7 29 359-387 21-49 (68)
348 KOG1532 GTPase XAB1, interacts 25.8 77 0.0017 35.9 4.0 38 62-107 18-55 (366)
349 PRK11034 clpA ATP-dependent Cl 25.7 62 0.0013 41.1 3.7 18 63-80 488-505 (758)
350 KOG2391 Vacuolar sorting prote 25.7 2.4E+02 0.0052 32.7 7.8 62 321-384 219-280 (365)
351 cd02023 UMPK Uridine monophosp 25.5 28 0.00062 35.8 0.6 15 66-80 2-16 (198)
352 PF08657 DASH_Spc34: DASH comp 25.5 1.1E+02 0.0024 34.0 5.2 83 279-376 168-258 (259)
353 PRK10246 exonuclease subunit S 25.5 48 0.001 43.5 2.8 23 64-86 31-60 (1047)
354 TIGR03689 pup_AAA proteasome A 25.5 29 0.00063 42.0 0.8 16 65-80 218-233 (512)
355 TIGR02894 DNA_bind_RsfA transc 25.4 3.3E+02 0.0071 28.5 8.1 36 354-389 115-150 (161)
356 cd01394 radB RadB. The archaea 25.3 51 0.0011 34.4 2.5 29 53-81 6-37 (218)
357 PF04102 SlyX: SlyX; InterPro 25.2 3.3E+02 0.0072 24.1 7.2 32 358-389 19-50 (69)
358 PF03668 ATP_bind_2: P-loop AT 25.1 89 0.0019 35.2 4.4 32 65-96 3-45 (284)
359 PRK06217 hypothetical protein; 25.0 33 0.00071 35.1 0.9 14 66-79 4-17 (183)
360 PF04548 AIG1: AIG1 family; I 24.9 36 0.00079 35.8 1.3 16 65-80 2-17 (212)
361 PRK14970 DNA polymerase III su 24.9 56 0.0012 37.2 2.9 28 54-81 29-57 (367)
362 PRK09111 DNA polymerase III su 24.8 41 0.0009 41.5 1.9 27 54-80 36-63 (598)
363 PF04859 DUF641: Plant protein 24.7 1.5E+02 0.0034 29.8 5.5 63 784-846 53-117 (131)
364 PF14584 DUF4446: Protein of u 24.6 1.9E+02 0.0042 29.6 6.4 63 329-391 25-87 (151)
365 TIGR00602 rad24 checkpoint pro 24.6 49 0.0011 41.2 2.5 17 65-81 112-128 (637)
366 PF04977 DivIC: Septum formati 24.5 1.7E+02 0.0036 25.6 5.3 24 358-381 25-48 (80)
367 TIGR00231 small_GTP small GTP- 24.5 31 0.00067 32.1 0.6 16 65-80 3-18 (161)
368 TIGR02688 conserved hypothetic 24.5 26 0.00056 41.6 0.1 36 60-97 208-252 (449)
369 PRK04325 hypothetical protein; 24.3 4.7E+02 0.01 23.7 8.0 29 359-387 25-53 (74)
370 cd00820 PEPCK_HprK Phosphoenol 24.2 36 0.00077 32.9 1.0 18 64-81 16-33 (107)
371 PF10458 Val_tRNA-synt_C: Valy 24.2 1.4E+02 0.003 26.1 4.6 16 321-336 5-20 (66)
372 cd01393 recA_like RecA is a b 24.2 53 0.0012 34.3 2.4 31 51-81 4-37 (226)
373 TIGR03263 guanyl_kin guanylate 24.2 33 0.00072 34.5 0.8 16 65-80 3-18 (180)
374 TIGR03881 KaiC_arch_4 KaiC dom 24.1 57 0.0012 34.3 2.6 29 53-81 7-38 (229)
375 TIGR03185 DNA_S_dndD DNA sulfu 24.1 2.6E+02 0.0056 34.8 8.6 16 65-80 30-45 (650)
376 TIGR02639 ClpA ATP-dependent C 23.9 68 0.0015 40.4 3.6 18 63-80 484-501 (731)
377 PF08317 Spc7: Spc7 kinetochor 23.8 3.5E+02 0.0075 30.8 8.9 63 322-384 186-250 (325)
378 PRK05416 glmZ(sRNA)-inactivati 23.7 90 0.002 35.1 4.2 17 65-81 8-24 (288)
379 PRK14532 adenylate kinase; Pro 23.6 37 0.0008 34.6 1.1 16 65-80 2-17 (188)
380 PF15254 CCDC14: Coiled-coil d 23.4 3E+02 0.0066 35.1 8.7 31 360-390 437-467 (861)
381 TIGR02173 cyt_kin_arch cytidyl 23.4 37 0.00079 33.6 1.0 16 65-80 2-17 (171)
382 PRK00300 gmk guanylate kinase; 23.3 36 0.00078 35.0 0.9 18 63-80 5-22 (205)
383 TIGR03877 thermo_KaiC_1 KaiC d 23.3 62 0.0014 34.6 2.8 27 53-79 8-37 (237)
384 TIGR03117 cas_csf4 CRISPR-asso 23.3 56 0.0012 40.7 2.7 32 43-80 2-33 (636)
385 PF08477 Miro: Miro-like prote 23.2 41 0.00088 31.1 1.2 15 66-80 2-16 (119)
386 KOG2228 Origin recognition com 23.2 1.1E+02 0.0024 35.7 4.6 40 37-80 27-66 (408)
387 COG2433 Uncharacterized conser 23.1 2.8E+02 0.0061 34.5 8.2 41 354-394 471-511 (652)
388 TIGR02639 ClpA ATP-dependent C 23.1 43 0.00094 42.1 1.7 35 53-87 193-227 (731)
389 TIGR00763 lon ATP-dependent pr 23.0 43 0.00093 42.4 1.7 16 65-80 349-364 (775)
390 PHA01747 putative ATP-dependen 23.0 40 0.00087 39.4 1.2 34 47-80 174-207 (425)
391 PRK09039 hypothetical protein; 22.9 3.5E+02 0.0076 31.2 8.8 15 322-336 139-153 (343)
392 KOG0330 ATP-dependent RNA heli 22.9 49 0.0011 38.9 1.9 24 55-80 92-115 (476)
393 TIGR01425 SRP54_euk signal rec 22.8 96 0.0021 36.9 4.3 19 63-81 100-118 (429)
394 PF12240 Angiomotin_C: Angiomo 22.8 9.2E+02 0.02 26.2 11.0 75 289-373 7-87 (205)
395 TIGR00959 ffh signal recogniti 22.7 1E+02 0.0022 36.7 4.5 20 63-82 99-118 (428)
396 PRK05342 clpX ATP-dependent pr 22.7 72 0.0016 37.6 3.3 17 64-80 109-125 (412)
397 cd02025 PanK Pantothenate kina 22.6 27 0.00058 37.3 -0.2 12 69-80 5-16 (220)
398 PRK11034 clpA ATP-dependent Cl 22.6 47 0.001 42.1 1.9 20 65-84 209-228 (758)
399 PRK06762 hypothetical protein; 22.6 42 0.00091 33.4 1.2 15 65-79 4-18 (166)
400 PRK14952 DNA polymerase III su 22.6 48 0.001 40.8 1.9 41 32-80 11-52 (584)
401 PF06156 DUF972: Protein of un 22.6 4.7E+02 0.01 25.4 8.2 33 353-385 25-57 (107)
402 KOG0652 26S proteasome regulat 22.5 76 0.0017 35.6 3.2 16 65-80 207-222 (424)
403 PF03969 AFG1_ATPase: AFG1-lik 22.5 55 0.0012 37.9 2.2 36 64-99 63-111 (362)
404 PRK05896 DNA polymerase III su 22.4 48 0.001 41.0 1.8 28 54-81 28-56 (605)
405 PRK11388 DNA-binding transcrip 22.3 49 0.0011 40.7 1.9 44 30-79 321-364 (638)
406 PF10146 zf-C4H2: Zinc finger- 22.2 5E+02 0.011 28.5 9.3 51 319-378 31-81 (230)
407 PRK05022 anaerobic nitric oxid 22.0 51 0.0011 39.6 1.9 43 32-80 185-227 (509)
408 PRK06851 hypothetical protein; 21.9 53 0.0011 38.2 1.9 31 50-80 17-47 (367)
409 PRK14960 DNA polymerase III su 21.9 56 0.0012 40.9 2.3 42 31-80 12-54 (702)
410 smart00787 Spc7 Spc7 kinetocho 21.7 5E+02 0.011 29.7 9.6 29 359-387 234-262 (312)
411 KOG2129 Uncharacterized conser 21.7 2.3E+02 0.005 33.6 6.8 21 318-338 251-271 (552)
412 PRK13531 regulatory ATPase Rav 21.6 68 0.0015 38.8 2.8 30 49-80 27-56 (498)
413 PRK14729 miaA tRNA delta(2)-is 21.6 46 0.00099 37.7 1.3 37 65-115 6-42 (300)
414 TIGR00929 VirB4_CagE type IV s 21.5 38 0.00082 42.4 0.7 20 63-82 434-453 (785)
415 PRK04040 adenylate kinase; Pro 21.5 42 0.00091 35.0 0.9 16 65-80 4-19 (188)
416 PF04859 DUF641: Plant protein 21.4 5.4E+02 0.012 26.0 8.6 70 318-388 47-118 (131)
417 TIGR00382 clpX endopeptidase C 21.4 41 0.00088 39.7 1.0 17 64-80 117-133 (413)
418 TIGR00390 hslU ATP-dependent p 21.3 65 0.0014 38.4 2.5 17 64-80 48-64 (441)
419 PRK13880 conjugal transfer cou 21.3 47 0.001 41.3 1.5 23 64-88 176-198 (636)
420 TIGR01351 adk adenylate kinase 21.3 48 0.001 34.7 1.4 28 66-93 2-35 (210)
421 TIGR01447 recD exodeoxyribonuc 21.2 44 0.00095 41.1 1.2 28 55-84 154-181 (586)
422 PRK13729 conjugal transfer pil 21.1 2.2E+02 0.0048 34.4 6.8 15 322-336 78-92 (475)
423 PRK05563 DNA polymerase III su 21.1 66 0.0014 39.4 2.6 41 32-80 14-55 (559)
424 COG1162 Predicted GTPases [Gen 21.0 1E+02 0.0023 35.0 4.0 31 53-85 156-186 (301)
425 TIGR03743 SXT_TraD conjugative 21.0 33 0.00072 42.5 0.1 27 62-88 175-201 (634)
426 PRK00846 hypothetical protein; 20.9 6.7E+02 0.014 23.2 8.8 13 324-336 10-22 (77)
427 PRK14530 adenylate kinase; Pro 20.9 43 0.00094 35.1 0.9 16 65-80 5-20 (215)
428 cd03274 ABC_SMC4_euk Eukaryoti 20.9 43 0.00094 35.5 0.9 17 65-81 27-43 (212)
429 TIGR02759 TraD_Ftype type IV c 20.9 84 0.0018 38.6 3.5 29 65-101 178-206 (566)
430 COG3879 Uncharacterized protei 20.8 5.8E+02 0.013 28.4 9.4 44 290-335 22-65 (247)
431 PRK10078 ribose 1,5-bisphospho 20.8 43 0.00093 34.4 0.9 16 65-80 4-19 (186)
432 KOG4603 TBP-1 interacting prot 20.8 1.9E+02 0.0041 30.5 5.3 61 322-385 81-144 (201)
433 TIGR01613 primase_Cterm phage/ 20.8 41 0.00089 37.5 0.8 28 53-80 63-93 (304)
434 PRK14527 adenylate kinase; Pro 20.7 49 0.0011 34.0 1.2 17 64-80 7-23 (191)
435 PF04111 APG6: Autophagy prote 20.7 1.9E+02 0.0041 32.9 6.0 8 694-701 245-252 (314)
436 PF14553 YqbF: YqbF, hypotheti 20.7 74 0.0016 26.2 2.0 25 75-99 3-33 (43)
437 PRK14958 DNA polymerase III su 20.6 61 0.0013 39.2 2.2 41 32-80 14-55 (509)
438 PRK03839 putative kinase; Prov 20.6 45 0.00097 33.8 0.9 14 66-79 3-16 (180)
439 PTZ00014 myosin-A; Provisional 20.6 91 0.002 40.0 3.8 35 45-80 165-200 (821)
440 PRK13889 conjugal transfer rel 20.6 61 0.0013 42.4 2.3 27 53-80 353-379 (988)
441 PF03193 DUF258: Protein of un 20.5 30 0.00065 35.7 -0.4 31 54-86 28-58 (161)
442 COG3839 MalK ABC-type sugar tr 20.5 41 0.00089 38.7 0.7 23 58-80 18-46 (338)
443 PRK13700 conjugal transfer pro 20.5 34 0.00073 43.0 0.0 49 66-123 188-240 (732)
444 PRK11608 pspF phage shock prot 20.4 55 0.0012 37.1 1.7 42 33-80 5-46 (326)
445 PRK14951 DNA polymerase III su 20.4 63 0.0014 40.1 2.3 43 31-81 13-56 (618)
446 TIGR02236 recomb_radA DNA repa 20.4 77 0.0017 35.3 2.8 31 51-81 80-113 (310)
447 TIGR03345 VI_ClpV1 type VI sec 20.3 97 0.0021 39.9 4.0 18 64-81 597-614 (852)
448 TIGR02768 TraA_Ti Ti-type conj 20.3 59 0.0013 41.1 2.1 28 54-82 360-387 (744)
449 PF12709 Kinetocho_Slk19: Cent 20.2 3.4E+02 0.0074 25.6 6.4 39 349-387 48-86 (87)
450 PF07106 TBPIP: Tat binding pr 20.2 73 0.0016 32.6 2.4 24 362-385 114-137 (169)
451 COG4942 Membrane-bound metallo 20.2 2.2E+02 0.0047 33.9 6.4 14 323-336 41-54 (420)
452 cd02027 APSK Adenosine 5'-phos 20.1 44 0.00095 33.3 0.7 15 66-80 2-16 (149)
453 KOG0250 DNA repair protein RAD 20.1 3.6E+02 0.0078 35.6 8.6 15 67-81 66-80 (1074)
454 PRK00295 hypothetical protein; 20.1 5.6E+02 0.012 22.8 7.6 37 355-391 17-53 (68)
455 TIGR01587 cas3_core CRISPR-ass 20.0 44 0.00096 37.5 0.8 15 66-80 2-16 (358)
456 PF10923 DUF2791: P-loop Domai 20.0 91 0.002 37.0 3.4 29 53-81 39-67 (416)
No 1
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=2.1e-89 Score=664.69 Aligned_cols=161 Identities=66% Similarity=1.107 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhhhcccceeecceeeeeecCCCCCceeEEeeehhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHH
Q 002455 742 EFERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIYMGVELKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRER 821 (920)
Q Consensus 742 ~F~~~~~eIIeLW~~C~VslvHRTyFfLLfkGD~~D~iYmEVElRRL~~l~~~~~~~~~~~~~~~~~~~~ss~k~l~~er 821 (920)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||+++++|++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhhCCCCCcccchhhhhhhccCCcccchhHHHHHHHHHHHhhhccccccccccccccccC
Q 002455 822 ETLSKLMRRRLSADERNKLYQKWGIGLNSKRRRLQLANHLWSNSKDMNRITESAAIIAKLIRFVEQGDALKGMFGLSFTP 901 (920)
Q Consensus 822 ~~l~k~~~~~l~~~ere~ly~kw~i~l~~k~r~lql~~~lwt~~~d~~hv~esa~~vaklv~~~e~~~~~kemf~l~f~~ 901 (920)
+||||||++||+.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 002455 902 L 902 (920)
Q Consensus 902 ~ 902 (920)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-82 Score=741.07 Aligned_cols=364 Identities=34% Similarity=0.508 Sum_probs=315.8
Q ss_pred ccCCceecceEeCCC-------CChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC--------CCchhHHHH
Q 002455 26 FHLPIHLIDRVFWGD-------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT--------GITECTVAD 90 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~-------asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~--------GIipral~d 90 (920)
-....|+||+.||.. ++|.+||+.++.++++.+++|||+||||||||||||||||+ ||||+.+.+
T Consensus 44 k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEe 123 (1221)
T KOG0245|consen 44 KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEE 123 (1221)
T ss_pred ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHH
Confidence 334569999999875 48999999999999999999999999999999999999997 499999999
Q ss_pred HHHHHHhcc--cCcEEEEeeeeeeeccceeecCC-CCC-CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhcc
Q 002455 91 IFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLS-TDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRR 166 (920)
Q Consensus 91 LF~~I~~~~--e~~f~V~vS~lEIYnE~V~DLLs-~~~-~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~ 166 (920)
||.+|.... +..|.|.|||+|||||+|+|||+ |.+ .+|+++|+|..|+||++|+.+.|.|+.++..++..|+++|+
T Consensus 124 LF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRT 203 (1221)
T KOG0245|consen 124 LFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRT 203 (1221)
T ss_pred HHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhh
Confidence 999998654 57899999999999999999998 544 58999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHH
Q 002455 167 IGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIR 246 (920)
Q Consensus 167 ~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~ 246 (920)
+++|+||++|||||+||+|++.+....... +.....+|+|+|||||||||++.+++.|+|+|||.+||+||++||+||.
T Consensus 204 tAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVIS 282 (1221)
T KOG0245|consen 204 TAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVIS 282 (1221)
T ss_pred hhhhccccccccceeEEEEEEEeeeccccC-CCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHH
Confidence 999999999999999999999987665432 2446789999999999999999999999999999999999999999999
Q ss_pred Hhcc------CCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHH
Q 002455 247 KLSK------GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKA 320 (920)
Q Consensus 247 aLs~------~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~ 320 (920)
||++ +++.+||||||.|||||+++||||+||+|||+|||++.||+|||+|||||.|||+|+|+|+||+.++.+
T Consensus 283 ALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK- 361 (1221)
T KOG0245|consen 283 ALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK- 361 (1221)
T ss_pred HHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-
Confidence 9974 244599999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 321 LVKHLQKELARLESELRSPAPASST--------------CDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 386 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL~~~~~~~s~--------------~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~ 386 (920)
+|++|++|+++|+..|+........ ......|.+.+.++..|++..+|--++-+....+-+.+++.
T Consensus 362 LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~e 441 (1221)
T KOG0245|consen 362 LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAE 441 (1221)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 8999999999999999765543221 11233455555555556655555544444444455556777
Q ss_pred hccCC
Q 002455 387 VGCDQ 391 (920)
Q Consensus 387 ~~~~~ 391 (920)
+|...
T Consensus 442 mGva~ 446 (1221)
T KOG0245|consen 442 MGVAV 446 (1221)
T ss_pred cCcee
Confidence 76543
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-82 Score=726.60 Aligned_cols=309 Identities=43% Similarity=0.613 Sum_probs=292.4
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC-------CCchhHHHHHHHHHHhccc
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT-------GITECTVADIFDYIHRHEE 100 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~-------GIipral~dLF~~I~~~~e 100 (920)
.++|+||+||+++++|++||+.+++|+|++|++|||+||||||||||||||||. ||+|+++.+||..|.+.++
T Consensus 51 ~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~ 130 (574)
T KOG4280|consen 51 PKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE 130 (574)
T ss_pred CCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc
Confidence 468999999999999999999999999999999999999999999999999996 5899999999999998764
Q ss_pred -CcEEEEeeeeeeeccceeecCCCCC-CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCC
Q 002455 101 -RAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSR 178 (920)
Q Consensus 101 -~~f~V~vS~lEIYnE~V~DLLs~~~-~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSR 178 (920)
..|.|+|||+|||||.|+|||++.+ +.+.++++|..|+||+||+++.|.+++++..+|..|.++|++++|.||..|||
T Consensus 131 ~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsR 210 (574)
T KOG4280|consen 131 KTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSR 210 (574)
T ss_pred cceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCccccc
Confidence 4699999999999999999999988 58999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCcccC
Q 002455 179 SHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 258 (920)
Q Consensus 179 SH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPY 258 (920)
||+||+|+|++... ...+......++|+|||||||||..++++.|.|+||+.+||+||.+||+||.+|+.++++||||
T Consensus 211 SH~ift~~i~~~~~--~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPY 288 (574)
T KOG4280|consen 211 SHAIFTIHIESSEK--SDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPY 288 (574)
T ss_pred ceEEEEEEEEeecc--cCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCc
Confidence 99999999998322 2334556788999999999999999999999999999999999999999999999998889999
Q ss_pred CCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHHhcC
Q 002455 259 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRS 338 (920)
Q Consensus 259 RDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~eL~~ 338 (920)
||||||+||||||||||+|+|||||+|+..+++||++||+||+|||.|+|+|.+|+++. .+++++|++||++|+.++..
T Consensus 289 RdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 289 RDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDP 367 (574)
T ss_pred chhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999987 45789999999999999865
Q ss_pred C
Q 002455 339 P 339 (920)
Q Consensus 339 ~ 339 (920)
.
T Consensus 368 ~ 368 (574)
T KOG4280|consen 368 G 368 (574)
T ss_pred c
Confidence 4
No 4
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-81 Score=736.92 Aligned_cols=352 Identities=53% Similarity=0.736 Sum_probs=325.8
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC------CchhHHHHHHHHHHhcccC
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHEER 101 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G------Iipral~dLF~~I~~~~e~ 101 (920)
...|.||+||+++++|++||+.+++|||++|+.|||+||||||||||||||||.| |+|.++.|||++|..+.++
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r 131 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGER 131 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCc
Confidence 3799999999999999999999999999999999999999999999999999965 7899999999999999999
Q ss_pred cEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCcee
Q 002455 102 AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQ 181 (920)
Q Consensus 102 ~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~ 181 (920)
.|.|+|||+|||||.|+|||+++..+++|++|+.+|++|.||+++.|.|+++++++|..|+.+|+++.|.+|..|||||+
T Consensus 132 ~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHa 211 (675)
T KOG0242|consen 132 EFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHA 211 (675)
T ss_pred eeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccC-CCCcccCCC
Q 002455 182 IIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRD 260 (920)
Q Consensus 182 IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRD 260 (920)
||+|+|.+..+... . ..++|+|||||||||+.++++.|.|++||++||+||++||+||++|+++ ...||||||
T Consensus 212 Il~i~i~s~~~~~~-----~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRD 285 (675)
T KOG0242|consen 212 ILRITVESRGREAS-----S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRD 285 (675)
T ss_pred eeeEEEEecccccc-----c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccc
Confidence 99999998765422 1 7789999999999999999999999999999999999999999999998 567999999
Q ss_pred CcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 002455 261 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 340 (920)
Q Consensus 261 SKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~eL~~~~ 340 (920)
||||||||++|||||+|+|||||+|+..+++||.+||+||+|||.|++++.+|+.+.++.+++.+++++..|+.++....
T Consensus 286 SKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 286 SKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLK 365 (675)
T ss_pred cHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002455 341 PASSTCDYVALLRKKDLQIQKME-REIRELTKQRDLAQSRVEDLLRMVGCDQ 391 (920)
Q Consensus 341 ~~~s~~~~~~~l~ekd~~i~kle-~ei~el~~q~d~~q~r~e~l~~~~~~~~ 391 (920)
...... ...+..+.+++ ++..++..+++.++...+.+........
T Consensus 366 ~~~~~~------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (675)
T KOG0242|consen 366 KKLEPE------REQELLIQKLEKEEVEELLPQRSEIQSLVELLKRLSASRR 411 (675)
T ss_pred cccccc------hhhHHHHhHhhhhhHhhhhhhhhHHHHHHHHHhhhccccc
Confidence 442211 24566677777 7888888888888888887776665544
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-80 Score=734.87 Aligned_cols=311 Identities=38% Similarity=0.596 Sum_probs=290.3
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC--------------CchhHHHHHHH
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------------ITECTVADIFD 93 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G--------------Iipral~dLF~ 93 (920)
.+.|+||+||+|.+.|++||+.++.|+|..|+.|||||||||||||+||||||.| ||||++.+||+
T Consensus 94 ~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd 173 (1041)
T KOG0243|consen 94 DKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFD 173 (1041)
T ss_pred cceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999964 99999999999
Q ss_pred HHHhcccCcEEEEeeeeeeeccceeecCCCCC---CCceeeeCC-----CCCeEeccceEEEeCCHHHHHHHHHHHHhhc
Q 002455 94 YIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLLDDP-----EKGVVVEKVTEEILKDWNHLKELLSICEAQR 165 (920)
Q Consensus 94 ~I~~~~e~~f~V~vS~lEIYnE~V~DLLs~~~---~~L~i~ed~-----~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R 165 (920)
.++... .+|.|+|||+|+|||.++|||++.. ..+++.+++ .+|++|.||.++.|.++.++..+|.+|...|
T Consensus 174 ~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kR 252 (1041)
T KOG0243|consen 174 TLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKR 252 (1041)
T ss_pred HHHhcC-CeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHh
Confidence 999776 7999999999999999999998754 356666665 6789999999999999999999999999999
Q ss_pred cccccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHH
Q 002455 166 RIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVI 245 (920)
Q Consensus 166 ~~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI 245 (920)
++++|.||..|||||+||+|+|...... ..+..-...|||+||||||||..+++|+.+.|.+|++.||+||++||+||
T Consensus 253 rtAaTl~N~~SSRSHsIFsItvhike~t--~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVI 330 (1041)
T KOG0243|consen 253 RTAATLMNDQSSRSHSIFSITVHIKENT--PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVI 330 (1041)
T ss_pred HHHHHHhhhhccccceEEEEEEEEecCC--CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999764432 33445567899999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHH
Q 002455 246 RKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHL 325 (920)
Q Consensus 246 ~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~L 325 (920)
+||..+ .+|||||+|||||||||||||..||+|||||||+..+++||++||.||.|||.|+|+|.+|.-+..+.+++.|
T Consensus 331 nALVe~-s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~ 409 (1041)
T KOG0243|consen 331 NALVEH-SGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDL 409 (1041)
T ss_pred HHHHcc-CCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHH
Confidence 999984 5699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 002455 326 QKELARLESELRSPAPA 342 (920)
Q Consensus 326 q~Eia~Le~eL~~~~~~ 342 (920)
-.||.+|+.+|...+..
T Consensus 410 ~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHHHHHHHHHhHhh
Confidence 99999999999876554
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.2e-74 Score=692.30 Aligned_cols=316 Identities=38% Similarity=0.567 Sum_probs=288.7
Q ss_pred CccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC----------------CchhHH
Q 002455 25 HFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG----------------ITECTV 88 (920)
Q Consensus 25 ~~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G----------------Iipral 88 (920)
.+..+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+| |+||++
T Consensus 128 ~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRal 207 (1320)
T PLN03188 128 TINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVF 207 (1320)
T ss_pred EEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHH
Confidence 3445799999999999999999999999999999999999999999999999999964 899999
Q ss_pred HHHHHHHHhc------ccCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHH
Q 002455 89 ADIFDYIHRH------EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICE 162 (920)
Q Consensus 89 ~dLF~~I~~~------~e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~ 162 (920)
++||..|... ....|.|+|||+|||||+|+|||++....+.|++++.+|++|.||+++.|.+++++.++|..|.
T Consensus 208 edLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~ 287 (1320)
T PLN03188 208 ERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGL 287 (1320)
T ss_pred HHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHh
Confidence 9999999743 2457999999999999999999999888999999999999999999999999999999999999
Q ss_pred hhccccccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHH
Q 002455 163 AQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLS 242 (920)
Q Consensus 163 ~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg 242 (920)
.+|++++|.+|..|||||+||+|+|++...... .+......|+|+|||||||||...+++.|.+++|+++||+||++||
T Consensus 288 ~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~-dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLG 366 (1320)
T PLN03188 288 SNRRTGATSINAESSRSHSVFTCVVESRCKSVA-DGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLG 366 (1320)
T ss_pred ccceeccCCCCCccCCCceeEEEEEEEeecccC-CCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999987543321 2233456899999999999999999999999999999999999999
Q ss_pred HHHHHhcc----CCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCH
Q 002455 243 TVIRKLSK----GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD 318 (920)
Q Consensus 243 ~VI~aLs~----~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~ 318 (920)
+||.+|+. ++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|++|..+.+
T Consensus 367 nVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~ 446 (1320)
T PLN03188 367 NLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446 (1320)
T ss_pred HHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh
Confidence 99999975 35569999999999999999999999999999999999999999999999999999999999987643
Q ss_pred -----HHHHHHHHHHHHHHHHHhcCCCC
Q 002455 319 -----KALVKHLQKELARLESELRSPAP 341 (920)
Q Consensus 319 -----~~lik~Lq~Eia~Le~eL~~~~~ 341 (920)
..+|++|+.|+.+|+.....+..
T Consensus 447 ~vn~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 447 DVNFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45788999999999998765544
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.7e-75 Score=649.90 Aligned_cols=294 Identities=40% Similarity=0.575 Sum_probs=280.8
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC---------CCchhHHHHHHHHHHhcc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHE 99 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~---------GIipral~dLF~~I~~~~ 99 (920)
++|.||+||.|+++|++||+.++.|+|++||.|||+||||||||||||||||. ||+||++++||++|....
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~ 128 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSME 128 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCc
Confidence 79999999999999999999999999999999999999999999999999995 699999999999999766
Q ss_pred c-CcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCC
Q 002455 100 E-RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSR 178 (920)
Q Consensus 100 e-~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSR 178 (920)
+ ..|.|+|||+|||+|+++|||++...++.+++|...+++|.|+++..|.++++++++++.|..+|+++.|.||.+|||
T Consensus 129 ~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSR 208 (607)
T KOG0240|consen 129 ENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSR 208 (607)
T ss_pred ccceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccc
Confidence 4 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCcccC
Q 002455 179 SHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 258 (920)
Q Consensus 179 SH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPY 258 (920)
||.||+|+|.+... .....+.|+|++|||||||+++++++.|.-+.|+.+||+||.|||+||++|+.+...||||
T Consensus 209 SHsIF~i~VkQ~n~-----e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipY 283 (607)
T KOG0240|consen 209 SHSIFLIHVKQENV-----EDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPY 283 (607)
T ss_pred cceEEEEEEEeccc-----cchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999998754 3445789999999999999999999999999999999999999999999999998889999
Q ss_pred CCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHH
Q 002455 259 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQK 327 (920)
Q Consensus 259 RDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~ 327 (920)
|||||||||||+|||||||+||+|+||+.-+-.||.+||+|+.|||.|+|.+.+|...+.++..+.|..
T Consensus 284 RDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~ 352 (607)
T KOG0240|consen 284 RDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEK 352 (607)
T ss_pred hhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888777666643
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.5e-71 Score=614.66 Aligned_cols=276 Identities=40% Similarity=0.575 Sum_probs=258.0
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC--------------CCchhHHHHHHH
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT--------------GITECTVADIFD 93 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~--------------GIipral~dLF~ 93 (920)
.+.|.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+ ||+|+++++||.
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~ 119 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS 119 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999996 478999999999
Q ss_pred HHHhc-----ccCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhcccc
Q 002455 94 YIHRH-----EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIG 168 (920)
Q Consensus 94 ~I~~~-----~e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~ 168 (920)
.+... ....|.|++||+|||||+|+|||++....+.+++++.+|++|+|++++.|.+++|++++|..|.++|+++
T Consensus 120 ~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~ 199 (337)
T cd01373 120 LIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVA 199 (337)
T ss_pred HHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcc
Confidence 98754 3457999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHh
Q 002455 169 ETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL 248 (920)
Q Consensus 169 ~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aL 248 (920)
+|.+|..|||||+||+|+|.+.... ........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|
T Consensus 200 ~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL 276 (337)
T cd01373 200 ATSMNSESSRSHAVFTCTIESWEKK---ASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMAL 276 (337)
T ss_pred cCcCCCCCCCccEEEEEEEEEeecC---CCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999875432 1222456799999999999999999999999999999999999999999999
Q ss_pred cc---CCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 249 SK---GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 249 s~---~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
++ ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 277 ~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 277 VDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 75 34679999999999999999999999999999999999999999999999999986
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-71 Score=635.35 Aligned_cols=348 Identities=32% Similarity=0.500 Sum_probs=304.2
Q ss_pred CccCCceecceEeCCCC-------ChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHH
Q 002455 25 HFHLPIHLIDRVFWGDC-------STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADI 91 (920)
Q Consensus 25 ~~~~ksFtFD~VF~~~a-------sQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dL 91 (920)
.-+.++|.||+.|++.+ .|+.||+.++..+|+++|+|||+||||||||||||||||+ |||||.+..|
T Consensus 49 ~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~l 128 (1714)
T KOG0241|consen 49 SKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESL 128 (1714)
T ss_pred cCCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHH
Confidence 34568999999999764 7999999999999999999999999999999999999997 5999999999
Q ss_pred HHHHHhc--ccCcEEEEeeeeeeeccceeecCCCCC--CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccc
Q 002455 92 FDYIHRH--EERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRI 167 (920)
Q Consensus 92 F~~I~~~--~e~~f~V~vS~lEIYnE~V~DLLs~~~--~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~ 167 (920)
|..|... +...|.|.|||+|||||+|||||+|.. ..++++++.-.|.+|.||++..|.|++++..++..|++.|++
T Consensus 129 Fe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtv 208 (1714)
T KOG0241|consen 129 FERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTV 208 (1714)
T ss_pred HHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhcccccee
Confidence 9999864 467899999999999999999999865 479999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHH
Q 002455 168 GETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRK 247 (920)
Q Consensus 168 ~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~a 247 (920)
++|+||..|||||+||.|.|.+...+. ..+.+....++|.+|||||+||++++++.|.|++||++||+||++||.||.+
T Consensus 209 aatnmn~EssrsHaVFslvvtQ~l~D~-ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsa 287 (1714)
T KOG0241|consen 209 AATNMNEESSRSHAVFSLVVTQTLYDL-KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISA 287 (1714)
T ss_pred eeecccccccccceeEEEEEeeEEecc-ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHH
Confidence 999999999999999999999876543 2334456789999999999999999999999999999999999999999999
Q ss_pred hcc-----CCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHH
Q 002455 248 LSK-----GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALV 322 (920)
Q Consensus 248 Ls~-----~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~li 322 (920)
|+. |+..+||||||.||+||||+|||||+|+||+||||+..+|+||++|||||.|||.|+|.+.+|..+... .+
T Consensus 288 Ladq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-vi 366 (1714)
T KOG0241|consen 288 LADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VI 366 (1714)
T ss_pred HHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HH
Confidence 974 345689999999999999999999999999999999999999999999999999999999999997765 78
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 323 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDL 375 (920)
Q Consensus 323 k~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~ 375 (920)
++|++|+..|+.+|...... ...+....+.+.+.-|+++....+|--...+.
T Consensus 367 rElReEve~lr~qL~~ae~~-~~~el~e~l~esekli~ei~~twEEkl~ktE~ 418 (1714)
T KOG0241|consen 367 RELREEVEKLREQLEQAEAM-KLPELKEKLEESEKLIKEITVTWEEKLRKTEE 418 (1714)
T ss_pred HHHHHHHHHHHHHHhhhhhc-cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999773322 12333444444444455544444433333333
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.7e-71 Score=609.78 Aligned_cols=277 Identities=43% Similarity=0.642 Sum_probs=262.0
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC------CchhHHHHHHHHHHhcc-c
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE-E 100 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G------Iipral~dLF~~I~~~~-e 100 (920)
.+.|+||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+| |+|+++++||+.+.... .
T Consensus 53 ~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~ 132 (338)
T cd01370 53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDD 132 (338)
T ss_pred ceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccC
Confidence 4789999999999999999999999999999999999999999999999999975 99999999999998776 6
Q ss_pred CcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCce
Q 002455 101 RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSH 180 (920)
Q Consensus 101 ~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH 180 (920)
..|.|++||+|||||+|+|||++...++.+++++.++++|.|++++.|.++++++++|..|.++|++++|.+|..|||||
T Consensus 133 ~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH 212 (338)
T cd01370 133 KEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSH 212 (338)
T ss_pred ceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcce
Confidence 78999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCC--CCcccC
Q 002455 181 QIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINY 258 (920)
Q Consensus 181 ~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPY 258 (920)
+||+|+|.+..... ........|+|+|||||||||..+++..|.+++|+++||+||.+|++||.+|+.+. ..||||
T Consensus 213 ~i~~i~i~~~~~~~--~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipy 290 (338)
T cd01370 213 AVLQITVRQKDRTA--SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPY 290 (338)
T ss_pred EEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCC
Confidence 99999998865431 12345678999999999999999999999999999999999999999999999876 379999
Q ss_pred CCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 259 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 259 RDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 291 R~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 291 RDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred cCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999986
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.4e-69 Score=597.86 Aligned_cols=274 Identities=33% Similarity=0.497 Sum_probs=254.9
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC------CchhHHHHHHHHHHhcc
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE 99 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G------Iipral~dLF~~I~~~~ 99 (920)
...+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+| |+|+++++||+.+..
T Consensus 52 ~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-- 129 (345)
T cd01368 52 QKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-- 129 (345)
T ss_pred CCceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh--
Confidence 345799999999999999999999999999999999999999999999999999975 999999999999876
Q ss_pred cCcEEEEeeeeeeeccceeecCCCCCC------CceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccc
Q 002455 100 ERAFVLKFSAMEIYNEAIRDLLSTDNT------PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLN 173 (920)
Q Consensus 100 e~~f~V~vS~lEIYnE~V~DLLs~~~~------~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N 173 (920)
|.|+|||+|||||+|+|||++... ++.+++|+.++++|.|++++.|.+++|+.++|..|.++|++++|.+|
T Consensus 130 ---~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N 206 (345)
T cd01368 130 ---YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLN 206 (345)
T ss_pred ---eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCc
Confidence 999999999999999999987543 69999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEEEEeccccccCC---CCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhcc
Q 002455 174 EKSSRSHQIIRLMIESSAREFLGK---ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK 250 (920)
Q Consensus 174 ~~SSRSH~IftL~Ve~~~~e~~~~---~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~ 250 (920)
..|||||+||+|+|.+......+. .......++|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++
T Consensus 207 ~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~ 286 (345)
T cd01368 207 RESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRE 286 (345)
T ss_pred CCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999998765432111 23456789999999999999999999999999999999999999999999986
Q ss_pred C-----CCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhh
Q 002455 251 G-----RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304 (920)
Q Consensus 251 ~-----k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK 304 (920)
+ +..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||.+|+
T Consensus 287 ~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 287 NQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred hhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 3 46799999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.1e-69 Score=596.33 Aligned_cols=287 Identities=37% Similarity=0.567 Sum_probs=267.2
Q ss_pred ccCCceecceEeCCC-------CChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHH
Q 002455 26 FHLPIHLIDRVFWGD-------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIF 92 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~-------asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF 92 (920)
...+.|.||+||++. ++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+|+++++||
T Consensus 45 ~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf 124 (356)
T cd01365 45 KKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELF 124 (356)
T ss_pred cCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHH
Confidence 445799999999999 99999999999999999999999999999999999999997 58999999999
Q ss_pred HHHHhccc--CcEEEEeeeeeeeccceeecCCCCC---CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccc
Q 002455 93 DYIHRHEE--RAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRI 167 (920)
Q Consensus 93 ~~I~~~~e--~~f~V~vS~lEIYnE~V~DLLs~~~---~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~ 167 (920)
+.+....+ ..|.|+|||+|||||+|+|||++.. ..+.+++++.+|++|+|++++.|.+++++..++..|.++|++
T Consensus 125 ~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~ 204 (356)
T cd01365 125 QRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTT 204 (356)
T ss_pred HHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccc
Confidence 99987654 6899999999999999999999874 689999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHH
Q 002455 168 GETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRK 247 (920)
Q Consensus 168 ~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~a 247 (920)
++|.+|..|||||+||+|+|.+...... ........++|+||||||+||...++..|.+++|+..||+||.+|++||.+
T Consensus 205 ~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~ 283 (356)
T cd01365 205 ASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISA 283 (356)
T ss_pred cCCCCCCCcCCceEEEEEEEEEEecccC-CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999987643321 124456789999999999999999999999999999999999999999999
Q ss_pred hccC-------CCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeec
Q 002455 248 LSKG-------RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313 (920)
Q Consensus 248 Ls~~-------k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN 313 (920)
|+.+ +..||||||||||+||+++||||++|+||+||||...+++||++||+||++|++|++.|++|
T Consensus 284 l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 284 LADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9864 35799999999999999999999999999999999999999999999999999999999876
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.4e-67 Score=585.71 Aligned_cols=284 Identities=39% Similarity=0.583 Sum_probs=265.5
Q ss_pred cCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC-----------------CCchhHHH
Q 002455 27 HLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT-----------------GITECTVA 89 (920)
Q Consensus 27 ~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~-----------------GIipral~ 89 (920)
..+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+|+++.
T Consensus 46 ~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~ 125 (352)
T cd01364 46 STKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALY 125 (352)
T ss_pred cceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHH
Confidence 4578999999999999999999999999999999999999999999999999995 58999999
Q ss_pred HHHHHHHhcccCcEEEEeeeeeeeccceeecCCCC---CCCceeeeC--CCCCeEeccceEEEeCCHHHHHHHHHHHHhh
Q 002455 90 DIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLKELLSICEAQ 164 (920)
Q Consensus 90 dLF~~I~~~~e~~f~V~vS~lEIYnE~V~DLLs~~---~~~L~i~ed--~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~ 164 (920)
+||+.+... ...|.|+|||+|||||+|+|||++. ..+++++++ +.+|++|.|++++.|.+++++.++|..|.++
T Consensus 126 ~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~ 204 (352)
T cd01364 126 QLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAK 204 (352)
T ss_pred HHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhh
Confidence 999999876 6689999999999999999999986 568999999 5899999999999999999999999999999
Q ss_pred ccccccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHH
Q 002455 165 RRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTV 244 (920)
Q Consensus 165 R~~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~V 244 (920)
|++++|.+|..|||||+||+|+|.+..... .+......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++|
T Consensus 205 R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~v 282 (352)
T cd01364 205 RKTAATLMNDQSSRSHSIFSITIHIKETTI--SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRV 282 (352)
T ss_pred cccccCcCCCCCCCCceEEEEEEEEeccCC--CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHH
Confidence 999999999999999999999998754321 223345679999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeecc
Q 002455 245 IRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 314 (920)
Q Consensus 245 I~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 314 (920)
|.+|+.+. .|||||+||||+||+++|||||+|+|||||||+..+++||++||+||++|++|+|+|.+|.
T Consensus 283 i~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 283 INALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99998754 6999999999999999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4e-67 Score=578.40 Aligned_cols=279 Identities=40% Similarity=0.621 Sum_probs=263.4
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC---------CchhHHHHHHHHHH
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG---------ITECTVADIFDYIH 96 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G---------Iipral~dLF~~I~ 96 (920)
...+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+| |+|+++++||+.+.
T Consensus 45 ~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~ 124 (333)
T cd01371 45 EPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIA 124 (333)
T ss_pred CCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999999999999999999999999975 89999999999999
Q ss_pred hcccCcEEEEeeeeeeeccceeecCCCCC-CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccC
Q 002455 97 RHEERAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEK 175 (920)
Q Consensus 97 ~~~e~~f~V~vS~lEIYnE~V~DLLs~~~-~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~ 175 (920)
..++..|.|.|||+|||||+|+|||++.. ..+.+++++.++++|.|++++.|.+++++..+|..|.++|+++.|.+|..
T Consensus 125 ~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ 204 (333)
T cd01371 125 KAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNED 204 (333)
T ss_pred hccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCC
Confidence 88888999999999999999999999876 58999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCc
Q 002455 176 SSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH 255 (920)
Q Consensus 176 SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~h 255 (920)
|||||+||+|+|++..... .+......|+|+||||||+||..+++..|.+++|+..||+||.+|++||.+|+.++..|
T Consensus 205 ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ 282 (333)
T cd01371 205 SSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTH 282 (333)
T ss_pred CCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCc
Confidence 9999999999998765432 12334678999999999999999999999999999999999999999999999987779
Q ss_pred ccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 256 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 256 IPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
|||||||||+||+++||||++|+||+||+|...+++||++||+||+|||+|
T Consensus 283 ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 283 IPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.9e-67 Score=574.68 Aligned_cols=277 Identities=56% Similarity=0.793 Sum_probs=262.7
Q ss_pred cCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhccc
Q 002455 27 HLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEE 100 (920)
Q Consensus 27 ~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~~e 100 (920)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+ ||+|+++++||..+...++
T Consensus 38 ~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~ 117 (321)
T cd01374 38 PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPD 117 (321)
T ss_pred CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccC
Confidence 3589999999999999999999999999999999999999999999999999998 7999999999999998888
Q ss_pred CcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCce
Q 002455 101 RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSH 180 (920)
Q Consensus 101 ~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH 180 (920)
..|.|++||+|||||+|+|||++...++++++++.+|++|.|++++.|.+++++..+|..|.++|+.+.|.+|..|||||
T Consensus 118 ~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH 197 (321)
T cd01374 118 REFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSH 197 (321)
T ss_pred ceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCcccccc
Confidence 89999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCC-CCcccCC
Q 002455 181 QIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYR 259 (920)
Q Consensus 181 ~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYR 259 (920)
+||+|+|.+..... ........|+|+||||||+|+..+.+ .+.+++|+.+||+||.+|++||.+|+.+. ..|||||
T Consensus 198 ~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR 274 (321)
T cd01374 198 TIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYR 274 (321)
T ss_pred EEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCc
Confidence 99999998865421 12345678999999999999999988 89999999999999999999999999875 5799999
Q ss_pred CCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 260 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 260 DSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
|||||+||+++||||++|+|||||||...+++||++||+||++|++|
T Consensus 275 ~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 275 DSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred CCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999986
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.6e-67 Score=576.49 Aligned_cols=266 Identities=35% Similarity=0.518 Sum_probs=252.4
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhcccC
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEER 101 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~~e~ 101 (920)
..+|+||+||+++++|++||+.+++|+|+.+++|||+||||||||||||||||+ ||+|+++++||+.+.... .
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~ 128 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-D 128 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-c
Confidence 479999999999999999999999999999999999999999999999999998 899999999999998766 6
Q ss_pred cEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCcee
Q 002455 102 AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQ 181 (920)
Q Consensus 102 ~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~ 181 (920)
.|.|++||+|||||+|+|||++ ..++.+++++.++++|.|++++.|.+++|++++|..|.++|+++.|.+|..|||||+
T Consensus 129 ~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~ 207 (322)
T cd01367 129 DLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHA 207 (322)
T ss_pred ccEEEEEEEeeecCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceE
Confidence 8999999999999999999987 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeccccccCCCCcceEEEEEEEEEcCCCccccccc-chhhhhhhhhcccccHHHHHHHHHHhccCCCCcccCCC
Q 002455 182 IIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 260 (920)
Q Consensus 182 IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRD 260 (920)
||+|.|.+... ....|+|+||||||||+...+. ..+.+++|+.+||+||++|++||.+|++++ .||||||
T Consensus 208 i~~i~v~~~~~--------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRd 278 (322)
T cd01367 208 ILQIILKNKKL--------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRG 278 (322)
T ss_pred EEEEEEEEecC--------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCcc
Confidence 99999987542 3578999999999999998765 468899999999999999999999999865 6999999
Q ss_pred CcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhh
Q 002455 261 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304 (920)
Q Consensus 261 SKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK 304 (920)
||||+||+|+|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 279 SkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 279 SKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred CHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999986
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.3e-66 Score=574.65 Aligned_cols=273 Identities=37% Similarity=0.522 Sum_probs=258.5
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC---------CCchhHHHHHHHHHHhc
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH 98 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~---------GIipral~dLF~~I~~~ 98 (920)
...|.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+ ||+|+++.+||+.++..
T Consensus 47 ~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~ 125 (334)
T cd01375 47 DFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR 125 (334)
T ss_pred ceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc
Confidence 357999999999 99999999999999999999999999999999999999996 49999999999999998
Q ss_pred ccCcEEEEeeeeeeeccceeecCCCCC------CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhcccccccc
Q 002455 99 EERAFVLKFSAMEIYNEAIRDLLSTDN------TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLL 172 (920)
Q Consensus 99 ~e~~f~V~vS~lEIYnE~V~DLLs~~~------~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~ 172 (920)
.+..|.|++||+|||||+|+|||++.. ..+.+++++.++++|+|++++.|.+++|++.++..|..+|.+++|.+
T Consensus 126 ~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~ 205 (334)
T cd01375 126 ATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSM 205 (334)
T ss_pred cCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcC
Confidence 888999999999999999999999874 57999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCC
Q 002455 173 NEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR 252 (920)
Q Consensus 173 N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k 252 (920)
|..|||||+||+|+|.+...+ ........++|+||||||+|+..++++.+.+++|+..||+||.+|++||.+|+.+.
T Consensus 206 n~~sSRSH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~ 282 (334)
T cd01375 206 NQASSRSHCIFTIHLESRSRE---AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA 282 (334)
T ss_pred cCCcCcCeEEEEEEEEEEecC---CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC
Confidence 999999999999999986433 23345678999999999999999999999999999999999999999999999877
Q ss_pred CCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhh
Q 002455 253 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304 (920)
Q Consensus 253 ~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK 304 (920)
..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 283 ~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 283 RTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999999999999999999999999985
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-66 Score=570.72 Aligned_cols=271 Identities=34% Similarity=0.529 Sum_probs=256.5
Q ss_pred CccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhc
Q 002455 25 HFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH 98 (920)
Q Consensus 25 ~~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~ 98 (920)
....+.|.||+||+++++|++||+.++.|+|+.+++|||+||||||||||||||||+ ||+|+++++||+.+...
T Consensus 43 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~ 122 (319)
T cd01376 43 RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ 122 (319)
T ss_pred CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc
Confidence 345579999999999999999999999999999999999999999999999999996 69999999999988765
Q ss_pred ccCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCC
Q 002455 99 EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSR 178 (920)
Q Consensus 99 ~e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSR 178 (920)
. ..|.|++||+|||||.|+|||++....+.+++++.++++|.|++++.|.+++++..++..|.++|..++|.+|..|||
T Consensus 123 ~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSR 201 (319)
T cd01376 123 A-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSR 201 (319)
T ss_pred c-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCC
Confidence 4 679999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCcccC
Q 002455 179 SHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINY 258 (920)
Q Consensus 179 SH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPY 258 (920)
||+||+|.|.+... .....|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+. .||||
T Consensus 202 SH~i~~i~v~~~~~-------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipy 273 (319)
T cd01376 202 SHAVLRIKVTQPAS-------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPY 273 (319)
T ss_pred CeEEEEEEEEEECC-------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCC
Confidence 99999999987532 12578999999999999999999999999999999999999999999999864 69999
Q ss_pred CCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhh
Q 002455 259 RDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304 (920)
Q Consensus 259 RDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK 304 (920)
|||+||+||+|+|||||+|+|||||||...+++||++||+||+|||
T Consensus 274 r~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 274 RESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred ccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2e-66 Score=573.57 Aligned_cols=280 Identities=39% Similarity=0.589 Sum_probs=261.8
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------------CCchhHHHHHHHHH
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYI 95 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------------GIipral~dLF~~I 95 (920)
.+.|.||+||+++++|++||+.+++|+|+.+++|||+||||||||||||||||+ ||+|+++++||+.+
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~ 118 (341)
T cd01372 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKI 118 (341)
T ss_pred CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999996 48999999999999
Q ss_pred Hhccc-CcEEEEeeeeeeeccceeecCCCC---CCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccc
Q 002455 96 HRHEE-RAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETL 171 (920)
Q Consensus 96 ~~~~e-~~f~V~vS~lEIYnE~V~DLLs~~---~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~ 171 (920)
....+ ..|.|.|||+|||||.|+|||++. ...+.+++++.++++|.|++++.|.++++++.+|..|.++|..+.|.
T Consensus 119 ~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~ 198 (341)
T cd01372 119 DEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTA 198 (341)
T ss_pred HhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhccccccc
Confidence 87765 789999999999999999999986 46899999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeEEEEEEEecccccc-----CCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHH
Q 002455 172 LNEKSSRSHQIIRLMIESSAREFL-----GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIR 246 (920)
Q Consensus 172 ~N~~SSRSH~IftL~Ve~~~~e~~-----~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~ 246 (920)
+|..|||||+||+|.|.+...... .........|+|+||||||+|+..++.+.|.+++|+..||+||.+|++||.
T Consensus 199 ~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~ 278 (341)
T cd01372 199 MNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVIS 278 (341)
T ss_pred CCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHH
Confidence 999999999999999988654311 113345688999999999999999999999999999999999999999999
Q ss_pred HhccCC--CCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccc
Q 002455 247 KLSKGR--NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 307 (920)
Q Consensus 247 aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ik 307 (920)
+|+.+. ..|||||+||||+||+++||||++|+||+||||...+++||++||+||++||+|+
T Consensus 279 al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 279 ALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999765 3799999999999999999999999999999999999999999999999999986
No 20
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.7e-66 Score=568.31 Aligned_cols=274 Identities=41% Similarity=0.578 Sum_probs=259.7
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC---------CCchhHHHHHHHHHHhc
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH 98 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~---------GIipral~dLF~~I~~~ 98 (920)
.+.|.||+||+++++|++||+.+++|+|+.+++|+|+||||||||||||||||+ ||+|+++++||+.+...
T Consensus 42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~ 121 (325)
T cd01369 42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM 121 (325)
T ss_pred ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc
Confidence 479999999999999999999999999999999999999999999999999995 59999999999999865
Q ss_pred c-cCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCC
Q 002455 99 E-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSS 177 (920)
Q Consensus 99 ~-e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SS 177 (920)
. ...|.|++||+|||||.|+|||++....+.+++++.+|++|+|++++.|.|++++..+|..|.++|++++|.+|..||
T Consensus 122 ~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ss 201 (325)
T cd01369 122 DENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESS 201 (325)
T ss_pred cCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccc
Confidence 4 457999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCccc
Q 002455 178 RSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHIN 257 (920)
Q Consensus 178 RSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIP 257 (920)
|||+||+|+|.+... .......++|+||||||+|+..++++.|.+++|+..||+||.+|++||.+|+.++..|||
T Consensus 202 RSH~i~~i~v~~~~~-----~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vp 276 (325)
T cd01369 202 RSHSIFLITLKQENV-----ETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIP 276 (325)
T ss_pred cccEEEEEEEEEEec-----CCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCC
Confidence 999999999987542 233457899999999999999999999999999999999999999999999988768999
Q ss_pred CCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 258 YRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
||||+||+||+++|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 277 yR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 277 YRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=6.9e-64 Score=550.97 Aligned_cols=276 Identities=37% Similarity=0.548 Sum_probs=260.2
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC------CchhHHHHHHHHHHhcc
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE 99 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G------Iipral~dLF~~I~~~~ 99 (920)
...+.|.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+| |+|+++++||+.+....
T Consensus 42 ~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~ 120 (329)
T cd01366 42 GKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK 120 (329)
T ss_pred CCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhh
Confidence 445789999999999999999998 59999999999999999999999999999975 89999999999998765
Q ss_pred --cCcEEEEeeeeeeeccceeecCCCC---CCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhcccccccccc
Q 002455 100 --ERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNE 174 (920)
Q Consensus 100 --e~~f~V~vS~lEIYnE~V~DLLs~~---~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~ 174 (920)
...|.|.+||+|||||+|+|||++. ..++.+++++.+++++.|++++.|.+++++..++..|..+|..+.|.+|.
T Consensus 121 ~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~ 200 (329)
T cd01366 121 EKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNE 200 (329)
T ss_pred ccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccC
Confidence 4789999999999999999999987 67899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCC
Q 002455 175 KSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG 254 (920)
Q Consensus 175 ~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~ 254 (920)
.|||||+||+|+|.+.... ......|+|+||||||+|+..++++.+.+++|+..||+||.+|++||.+|+.+ ..
T Consensus 201 ~sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~ 274 (329)
T cd01366 201 HSSRSHAVFQLKIRGTNLQ-----TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DS 274 (329)
T ss_pred CCCCccEEEEEEEEEEcCC-----CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CC
Confidence 9999999999999875432 34567899999999999999999999999999999999999999999999986 56
Q ss_pred cccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcccc
Q 002455 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 308 (920)
Q Consensus 255 hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn 308 (920)
|||||+||||+||+++||||++|+|||||||...+++||++||+||++|++|++
T Consensus 275 ~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 275 HVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred cCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999999999999986
No 22
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.4e-64 Score=556.32 Aligned_cols=281 Identities=41% Similarity=0.633 Sum_probs=257.6
Q ss_pred CccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC--------CchhHHHHHHHHHH
Q 002455 25 HFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIFDYIH 96 (920)
Q Consensus 25 ~~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G--------Iipral~dLF~~I~ 96 (920)
......|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+| |+|+++++||..+.
T Consensus 37 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~ 116 (335)
T PF00225_consen 37 SQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIE 116 (335)
T ss_dssp TTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhhc
Confidence 3345799999999999999999999999999999999999999999999999999987 79999999999999
Q ss_pred hcccC---cEEEEeeeeeeeccceeecCCCC----CCCceeeeCCCCC-eEeccceEEEeCCHHHHHHHHHHHHhhcccc
Q 002455 97 RHEER---AFVLKFSAMEIYNEAIRDLLSTD----NTPLRLLDDPEKG-VVVEKVTEEILKDWNHLKELLSICEAQRRIG 168 (920)
Q Consensus 97 ~~~e~---~f~V~vS~lEIYnE~V~DLLs~~----~~~L~i~ed~~~g-~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~ 168 (920)
...+. .|.|+|||+|||||.|+|||++. ..++.+++++..| ++|.|++++.|.+++++..+|..|.++|+++
T Consensus 117 ~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~ 196 (335)
T PF00225_consen 117 ERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTA 196 (335)
T ss_dssp HHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCT
T ss_pred cccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccc
Confidence 87654 89999999999999999999987 3579999999987 9999999999999999999999999999999
Q ss_pred ccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccc-hhhhhhhhhcccccHHHHHHHHHH
Q 002455 169 ETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALS-TGARLKEGCHINRSLLTLSTVIRK 247 (920)
Q Consensus 169 ~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s-~g~rlkEg~~INkSL~aLg~VI~a 247 (920)
.|.+|..|||||+||+|.|.+......... .....++|+||||||+|+..+..+ .+.+++|+..||+||.+|++||.+
T Consensus 197 ~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~ 275 (335)
T PF00225_consen 197 STKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRA 275 (335)
T ss_dssp SSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc-cceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhh
Confidence 999999999999999999998754321111 135789999999999999998876 488899999999999999999999
Q ss_pred hccC-CCCcccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhcc
Q 002455 248 LSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 306 (920)
Q Consensus 248 Ls~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~I 306 (920)
|+.+ ...|||||+||||+||+|+|||||+|+||+||||...+++||++||+||.+||+|
T Consensus 276 L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 276 LAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9987 5679999999999999999999999999999999999999999999999999987
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.9e-63 Score=545.59 Aligned_cols=285 Identities=43% Similarity=0.636 Sum_probs=269.3
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhcc
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE 99 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~~ 99 (920)
...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+ |++|+++++||+.+....
T Consensus 43 ~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~ 122 (335)
T smart00129 43 KEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE 122 (335)
T ss_pred CCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc
Confidence 44589999999999999999999999999999999999999999999999999998 799999999999998655
Q ss_pred -cCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCC
Q 002455 100 -ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSR 178 (920)
Q Consensus 100 -e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSR 178 (920)
+..|.|+|||+|||+|.|+|||++...++.+++++.+++++.|++++.|.+++++.+++..|..+|.+++|.+|..|||
T Consensus 123 ~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssR 202 (335)
T smart00129 123 EGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSR 202 (335)
T ss_pred cCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccC-CCCccc
Q 002455 179 SHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHIN 257 (920)
Q Consensus 179 SH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIP 257 (920)
||+||+|+|.+.... ........++|+||||||+|+....++.|.+++|+..||+||.+|++||.+|+.+ +..|||
T Consensus 203 sH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip 279 (335)
T smart00129 203 SHAVFTITVESKIKN---SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIP 279 (335)
T ss_pred ceEEEEEEEEEEecC---CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999975322 3344578999999999999999999999999999999999999999999999985 567999
Q ss_pred CCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeec
Q 002455 258 YRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313 (920)
Q Consensus 258 YRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN 313 (920)
||+|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+++|++|
T Consensus 280 ~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 280 YRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999875
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.8e-62 Score=533.61 Aligned_cols=276 Identities=43% Similarity=0.616 Sum_probs=260.3
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC------CchhHHHHHHHHHHhcc
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE 99 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G------Iipral~dLF~~I~~~~ 99 (920)
...+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+| |+|+++++||+.+....
T Consensus 42 ~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~ 121 (328)
T cd00106 42 AGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERK 121 (328)
T ss_pred cCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhcc
Confidence 345899999999999999999999999999999999999999999999999999987 99999999999999876
Q ss_pred --cCcEEEEeeeeeeeccceeecCCCC--CCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccC
Q 002455 100 --ERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEK 175 (920)
Q Consensus 100 --e~~f~V~vS~lEIYnE~V~DLLs~~--~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~ 175 (920)
...|.|.+||+|||+|+|+|||++. ..++.+++++.+++++.|++++.|.+++++..++..|.++|..+.|.+|..
T Consensus 122 ~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ 201 (328)
T cd00106 122 EKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNER 201 (328)
T ss_pred ccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCC
Confidence 5789999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCC-CC
Q 002455 176 SSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NG 254 (920)
Q Consensus 176 SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~ 254 (920)
|||||+||+|+|.+..... .......++|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. ..
T Consensus 202 ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~ 278 (328)
T cd00106 202 SSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKK 278 (328)
T ss_pred cCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence 9999999999998865431 1113678999999999999999988999999999999999999999999999876 57
Q ss_pred cccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhh
Q 002455 255 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 304 (920)
Q Consensus 255 hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK 304 (920)
|||||+||||+||+++|||+++|+|||||+|...+++||++||+||+|||
T Consensus 279 ~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 279 HIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999986
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.9e-63 Score=584.16 Aligned_cols=276 Identities=38% Similarity=0.546 Sum_probs=260.0
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC-------CchhHHHHHHHHHHhcc-cC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG-------ITECTVADIFDYIHRHE-ER 101 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G-------Iipral~dLF~~I~~~~-e~ 101 (920)
.|.||+||+|.++|++||.+ +.|+|+++++|||+||||||||||||||||.| |+||++.+||..+.... .+
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~ 439 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGW 439 (670)
T ss_pred cceeeeecCCcccHHHHHHH-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCc
Confidence 59999999999999999988 99999999999999999999999999999976 99999999999998654 58
Q ss_pred cEEEEeeeeeeeccceeecCCCCC--CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCc
Q 002455 102 AFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRS 179 (920)
Q Consensus 102 ~f~V~vS~lEIYnE~V~DLLs~~~--~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRS 179 (920)
.|.+.++|+|||||.|+|||++.. ..+.|+++++++++|.+++.+.|.+.+++..++..|..+|++++|.+|.+||||
T Consensus 440 ~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRS 519 (670)
T KOG0239|consen 440 KYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRS 519 (670)
T ss_pred eEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhcc
Confidence 999999999999999999999874 789999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCcccCC
Q 002455 180 HQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYR 259 (920)
Q Consensus 180 H~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYR 259 (920)
|+||+|+|... +........+.|+|||||||||++++++.|.|++|+.+||+||.+||.||.||+. +..|||||
T Consensus 520 H~v~~v~v~g~-----~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyR 593 (670)
T KOG0239|consen 520 HLVFRVRIRGI-----NELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYR 593 (670)
T ss_pred ceEEEEEEecc-----ccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCccc
Confidence 99999999765 2334456789999999999999999999999999999999999999999999998 56699999
Q ss_pred CCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceee
Q 002455 260 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQV 312 (920)
Q Consensus 260 DSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~v 312 (920)
|||||+|||++|||++||+|+++|||...++.||+++|+||.|++.+...+-.
T Consensus 594 NSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 594 NSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred ccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 99999999999999999999999999999999999999999999998876554
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-63 Score=585.73 Aligned_cols=306 Identities=36% Similarity=0.544 Sum_probs=283.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc----------CCCchhHHHHHHHHHHhc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM----------TGITECTVADIFDYIHRH 98 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM----------~GIipral~dLF~~I~~~ 98 (920)
++|+||+||....+|.++|+.++.|+++.++.|||+||+||||||||||||| .|++|+++.++|..|...
T Consensus 32 ~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~ 111 (913)
T KOG0244|consen 32 ASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKT 111 (913)
T ss_pred cceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999999999 289999999999999998
Q ss_pred ccCcEEEEeeeeeeeccceeecCCCCC--CCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCC
Q 002455 99 EERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKS 176 (920)
Q Consensus 99 ~e~~f~V~vS~lEIYnE~V~DLLs~~~--~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~S 176 (920)
....|.|.|||+|||+|.|+|||.|.. .++.+++ +.+++.+.|+++..|.+..++...|..|...|++++|+||..|
T Consensus 112 ~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qs 190 (913)
T KOG0244|consen 112 ESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQS 190 (913)
T ss_pred hccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhh
Confidence 888999999999999999999998554 3577777 7788999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccC-CCCc
Q 002455 177 SRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGH 255 (920)
Q Consensus 177 SRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~h 255 (920)
||||+||++++++.... .....++++|+|||||||||.++++++|.|++||.+||.+|++||+||.||... +.+|
T Consensus 191 sRshAifti~lkq~kk~----~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~ 266 (913)
T KOG0244|consen 191 SRSHAIFTITLKQRKKL----SKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGE 266 (913)
T ss_pred hhhhHHHHHHHHHHHHh----hccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCc
Confidence 99999999999875432 233367899999999999999999999999999999999999999999999764 4579
Q ss_pred ccCCCCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHH
Q 002455 256 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESE 335 (920)
Q Consensus 256 IPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~e 335 (920)
|||||||||||||++||||++|+||+||||++.+.+||++||+||.||++|+|+|++|.. .....+..|+.+|..|+.+
T Consensus 267 vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~e 345 (913)
T KOG0244|consen 267 VPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVE 345 (913)
T ss_pred ccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999994 3455788999999999998
Q ss_pred hcCCC
Q 002455 336 LRSPA 340 (920)
Q Consensus 336 L~~~~ 340 (920)
|-...
T Consensus 346 ll~~~ 350 (913)
T KOG0244|consen 346 LLSKA 350 (913)
T ss_pred HHhhc
Confidence 86654
No 27
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-61 Score=537.59 Aligned_cols=273 Identities=34% Similarity=0.496 Sum_probs=250.8
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------------CCchhHHHHHHHHHH
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIH 96 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------------GIipral~dLF~~I~ 96 (920)
..|.||++|++.++++.||..+++|||..+|+|--+|+||||||||||||||- ||.-.+.+|+|..+.
T Consensus 258 ~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~ 337 (676)
T KOG0246|consen 258 QKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLR 337 (676)
T ss_pred ceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhc
Confidence 48999999999999999999999999999999999999999999999999992 677788999999887
Q ss_pred hcc--cCcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhcccccccccc
Q 002455 97 RHE--ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNE 174 (920)
Q Consensus 97 ~~~--e~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~ 174 (920)
.-. ...+.|.+||+|||+.+|||||+. .+.|++++|.+..+.|.||+|..|.+.++++++|..|++.|+.|.|..|.
T Consensus 338 ~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs 416 (676)
T KOG0246|consen 338 QPTYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANS 416 (676)
T ss_pred ccchhhcceEEEEEEEEEeCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcc
Confidence 533 457899999999999999999986 67899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccc-cchhhhhhhhhcccccHHHHHHHHHHhccCCC
Q 002455 175 KSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQA-LSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 253 (920)
Q Consensus 175 ~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt-~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~ 253 (920)
.|||||+||+|.+.... .....+++.||||||+||...+ .+..++..||+.||+||+||..||+||.+++
T Consensus 417 ~SSRSHAvfQIilr~~~--------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk- 487 (676)
T KOG0246|consen 417 NSSRSHAVFQIILRKHG--------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK- 487 (676)
T ss_pred cccccceeEeeeeecCC--------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-
Confidence 99999999999996532 2468999999999999997654 4566778899999999999999999998865
Q ss_pred CcccCCCCcccccccccCCC-CcccceEeccCCCcchHHHHHHHHHHHHHhhcccccee
Q 002455 254 GHINYRDSKLTRMLQPCLGG-NARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 311 (920)
Q Consensus 254 ~hIPYRDSKLTrLLqdSLGG-NskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~ 311 (920)
.|+|||.||||.+|+|||=| |++|+||+||||....++.||||||||.|+|+......
T Consensus 488 ~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 488 SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 59999999999999999988 99999999999999999999999999999998765443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-58 Score=537.04 Aligned_cols=282 Identities=42% Similarity=0.637 Sum_probs=264.7
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhcc-c
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-E 100 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~~-e 100 (920)
..+|.||+||++.++|++||+..++|++++++.|||+||||||||||||||||. ||+|+++.+||+.+.... +
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 356999999999999999999999999999999999999999999999999995 599999999999998655 4
Q ss_pred CcEEEEeeeeeeeccceeecCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCce
Q 002455 101 RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSH 180 (920)
Q Consensus 101 ~~f~V~vS~lEIYnE~V~DLLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH 180 (920)
..|.|.+||+|||||+++|||.+....+.++++...+++|.|+++..+.++++++.+|..|..+|+++.|.+|..|||||
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRsh 214 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSH 214 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccce
Confidence 67999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhcc-CCCCcccCC
Q 002455 181 QIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK-GRNGHINYR 259 (920)
Q Consensus 181 ~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~-~k~~hIPYR 259 (920)
+||++++.+.... ......++++||||||||++..++..+.|++||..||+||++||+||.+|.. ++..|||||
T Consensus 215 si~~i~~~~~~~~-----~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyR 289 (568)
T COG5059 215 SIFQIELASKNKV-----SGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYR 289 (568)
T ss_pred EEEEEEEEEeccC-----ccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchh
Confidence 9999999887543 2223347899999999999999999999999999999999999999999985 356799999
Q ss_pred CCcccccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeecc
Q 002455 260 DSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 314 (920)
Q Consensus 260 DSKLTrLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~ 314 (920)
+|||||+||++|||+++|+|||||+|...++++|.+||+||.+|+.|++.+.+|.
T Consensus 290 eskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 290 ESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999995
No 29
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-57 Score=520.19 Aligned_cols=285 Identities=31% Similarity=0.465 Sum_probs=259.3
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhc-
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH- 98 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~- 98 (920)
.-...|.|-+||+|+++|.+||+.++.|+|.+++.|.|..+|+||-|||||||||+ ||+||+++-||..|...
T Consensus 78 q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~ 157 (809)
T KOG0247|consen 78 QMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQ 157 (809)
T ss_pred ceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhcee
Confidence 33468999999999999999999999999999999999999999999999999997 59999999999866530
Q ss_pred ----------------------------------------------------------------ccCcEEEEeeeeeeec
Q 002455 99 ----------------------------------------------------------------EERAFVLKFSAMEIYN 114 (920)
Q Consensus 99 ----------------------------------------------------------------~e~~f~V~vS~lEIYn 114 (920)
.+..|.|+|||+||||
T Consensus 158 ~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN 237 (809)
T KOG0247|consen 158 AKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYN 237 (809)
T ss_pred ccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHH
Confidence 1125789999999999
Q ss_pred cceeecCCCCCC------CceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCceeEEEEEEE
Q 002455 115 EAIRDLLSTDNT------PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 188 (920)
Q Consensus 115 E~V~DLLs~~~~------~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve 188 (920)
|-|||||.+.+. -..+++|.++..||.|++++.|.+.+|++++++.|.++|++++|.+|..|||||+||+|.|.
T Consensus 238 ~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~ 317 (809)
T KOG0247|consen 238 NYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLV 317 (809)
T ss_pred HHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEee
Confidence 999999986532 26678899999999999999999999999999999999999999999999999999999998
Q ss_pred eccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccC----CCCcccCCCCccc
Q 002455 189 SSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG----RNGHINYRDSKLT 264 (920)
Q Consensus 189 ~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~----k~~hIPYRDSKLT 264 (920)
+.... .+......|.|.|||||||||..++.+.|.|++|+++||.||++||+||.+|..+ .+.+|||||||||
T Consensus 318 q~~~~---~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLT 394 (809)
T KOG0247|consen 318 QAPRS---QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLT 394 (809)
T ss_pred ecccc---cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHH
Confidence 86654 2345678899999999999999999999999999999999999999999999753 3468999999999
Q ss_pred ccccccCCCCcccceEeccCCCcchHHHHHHHHHHHHHhhccccceeec
Q 002455 265 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 313 (920)
Q Consensus 265 rLLqdSLGGNskT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN 313 (920)
++++.+|.|..+.+||+||+|.+.+|+|+++.|+||..|+.|.....++
T Consensus 395 hlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 395 HLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 9999999999999999999999999999999999999999998876654
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.4e-44 Score=366.87 Aligned_cols=173 Identities=44% Similarity=0.654 Sum_probs=160.5
Q ss_pred HHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC------CCchhHHHHHHHHHHhcccCcEEEEeeeeeeeccceee
Q 002455 46 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRD 119 (920)
Q Consensus 46 VYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~------GIipral~dLF~~I~~~~e~~f~V~vS~lEIYnE~V~D 119 (920)
||+.++ |+|+.+++|||+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999998 788888877
Q ss_pred cCCCCCCCceeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccCCCCceeEEEEEEEeccccccCCCC
Q 002455 120 LLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 199 (920)
Q Consensus 120 LLs~~~~~L~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~ 199 (920)
+.+++..|.++|+.+.|.+|..|||||+||+|+|.+..... ...
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~ 101 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SAT 101 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCc
Confidence 88999999999999999999999999999999998765432 122
Q ss_pred cceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcccce
Q 002455 200 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAI 279 (920)
Q Consensus 200 ~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~m 279 (920)
.....++|+||||||||+..+++..+.+++|+..||+||.+|++||.+|+++ ..||||||||||+||||+|||||+|+|
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 4567899999999999999999999999999999999999999999999975 469999999999999999999999999
Q ss_pred EeccCC
Q 002455 280 ICTLSP 285 (920)
Q Consensus 280 IatISP 285 (920)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=96.58 E-value=2.4e-05 Score=93.57 Aligned_cols=209 Identities=25% Similarity=0.233 Sum_probs=131.2
Q ss_pred CccCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC----CCchhHHHHHHHHHHhccc
Q 002455 25 HFHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHEE 100 (920)
Q Consensus 25 ~~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~----GIipral~dLF~~I~~~~e 100 (920)
..+...|.||.+|.+...+..++.. ...+++..++| +++||++++|+++||. ++....+..+|..+.....
T Consensus 349 ~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 423 (568)
T COG5059 349 SREIEEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKE 423 (568)
T ss_pred hHHHHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhh
Confidence 3455689999999998888888866 66778888888 9999999999999995 4555555666766654432
Q ss_pred --CcEEEEeeeeeeeccceeecCCCC-CCCcee-eeC-CCCCeEeccceEEEeCCHHHHHHHHHHHHhhccccccccccC
Q 002455 101 --RAFVLKFSAMEIYNEAIRDLLSTD-NTPLRL-LDD-PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEK 175 (920)
Q Consensus 101 --~~f~V~vS~lEIYnE~V~DLLs~~-~~~L~i-~ed-~~~g~~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~ 175 (920)
..+...+-++++|-....++.... ..+... ... .-....+..++. ......+..... .+...+..+.+..|..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~ 501 (568)
T COG5059 424 EGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLR 501 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccchhhh
Confidence 233344445555522222222111 110000 000 000000001111 111111111112 4566778889999999
Q ss_pred CCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCcccccccchhhhhhhhhcccccHHHHHHHHHHhc
Q 002455 176 SSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 249 (920)
Q Consensus 176 SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~~kt~s~g~rlkEg~~INkSL~aLg~VI~aLs 249 (920)
++++|.+|+........- .. ... ++.|||||+||. -...-|.++++...+|++|..++.+|.++.
T Consensus 502 ~~~~~~~~~~~~~~~~~~-----~~-~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 502 SSRSHSKFRDHLNGSNSS-----TK-ELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hcccchhhhhcccchhhh-----hH-HHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999999997766432110 00 011 799999999999 888899999999999999999999998764
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.049 Score=64.33 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=60.9
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCchh-------------HHHHHHHHHH
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIH 96 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipr-------------al~dLF~~I~ 96 (920)
.|..-.-|.|.-+|-+- ...||+.+-.|.-.-++ .|.|||||||||.-+|.. ....||..+.
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 45666678888888653 45577777777655444 599999999999765543 3567888776
Q ss_pred h-cccCcEEEEeeeeeeecccee
Q 002455 97 R-HEERAFVLKFSAMEIYNEAIR 118 (920)
Q Consensus 97 ~-~~e~~f~V~vS~lEIYnE~V~ 118 (920)
. .++..+...|||+.-|.-..|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 5 467788889999999976554
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.20 E-value=0.025 Score=60.05 Aligned_cols=51 Identities=31% Similarity=0.432 Sum_probs=33.9
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
+.|+||.-+..+ .++..|.. +..+++.--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 579999877654 56777754 66666653334555 68899999999997544
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=91.45 E-value=0.13 Score=54.84 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=34.0
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
..++||..+... +..- +..+...+-.++|..++-||++|+||||-+.++
T Consensus 11 ~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai 59 (229)
T PRK06893 11 DDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAV 59 (229)
T ss_pred CcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHHH
Confidence 567999999755 2221 222233334578888999999999999988654
No 35
>PRK06620 hypothetical protein; Validated
Probab=90.70 E-value=0.19 Score=53.38 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=34.3
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCcc---EEEEEeccCCcCcccccC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGIN---SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~N---atIfAYGQTGSGKTyTM~ 81 (920)
..|+||..+... ++...|.. ++.+.+. -|+| -.++-||++|+||||.+.
T Consensus 11 ~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSS-SNDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecc-cHHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 578999888765 44667765 4444431 1444 358999999999999875
No 36
>PRK12377 putative replication protein; Provisional
Probab=89.76 E-value=0.23 Score=54.08 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=38.1
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
...+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+|.
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred ccCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHH
Confidence 344677655545566667754 777888777654 467889999999999986543
No 37
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.01 E-value=0.46 Score=53.31 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.2
Q ss_pred hHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 50 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 50 ~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
...+++..+++--++.|+.-|+||||||+||.-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 467888889999999999999999999999743
No 38
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.58 E-value=0.35 Score=52.62 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=36.7
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
..++||........|..++.. +...++....|+. .++-||.+|+||||.+.+|.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred cCCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHHHHH
Confidence 356777655444456667655 6666666555543 68889999999999986643
No 39
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.57 E-value=0.24 Score=60.32 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=37.6
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
..|+||..+-... +..+| ..+..++...-.+||. ||-||.+|+||||-+..|
T Consensus 283 ~~~TFDnFvvG~s-N~~A~-aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAH-AAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCHhhhcCCCc-cHHHH-HHHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 5799998775543 44555 3466666654456786 899999999999998653
No 40
>PRK08116 hypothetical protein; Validated
Probab=88.51 E-value=0.23 Score=54.55 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=37.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhC--CccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~--G~NatIfAYGQTGSGKTyTM~G 82 (920)
..++||... .+..+...|.. ++..++.+.. +.+..++-||++|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 567888655 34455556644 7777777654 3455699999999999998765
No 41
>PRK06526 transposase; Provisional
Probab=87.44 E-value=0.27 Score=53.62 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=30.8
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
.|.|+ +.+..++..+..-...+.+. .+.| |+.||++|+||||.+.++.
T Consensus 72 ~fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 72 EFDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHH
Confidence 44444 44555555555544444443 3444 7899999999999997654
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=87.13 E-value=0.48 Score=50.81 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=30.1
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhC---Cc-cEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVS---GI-NSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~---G~-NatIfAYGQTGSGKTyTM~GI 83 (920)
..|+||.-+... +.. +...+....+ ++ ...++-||++|+||||-+.++
T Consensus 14 ~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 14 DDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 468999888432 232 3333433332 22 246889999999999987543
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.04 E-value=0.44 Score=55.95 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=35.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..|+||.-+-.. ++...|.. +..+++. -..||. +|-||++|+||||-|..
T Consensus 100 ~~~tFdnFv~g~-~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVGP-GNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccCC-chHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 679999877543 55556654 5555543 123675 99999999999998754
No 44
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.64 E-value=0.49 Score=55.43 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=34.6
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
..|+||.-... ..+...|.. ++.+++.--..+| .++-||++|+||||.+..+
T Consensus 117 ~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 117 PKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHHH
Confidence 68899985543 355556644 5555554223355 4788999999999998653
No 45
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.60 E-value=0.52 Score=54.35 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=33.3
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..|+||...- ...+...|.. +..++..--..+| .++-||++|+||||.+..
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 6899998543 2345556644 5555554212244 478899999999998754
No 46
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.38 E-value=0.28 Score=55.63 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCch
Q 002455 45 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE 85 (920)
Q Consensus 45 eVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIip 85 (920)
.+++. ++..++.+-.+. -.|+-||++|+||||.+.+|..
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~ 205 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAK 205 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHH
Confidence 44533 666787776554 5599999999999998866443
No 47
>PRK09087 hypothetical protein; Validated
Probab=86.35 E-value=0.48 Score=50.73 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=32.4
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..|+||.-+..+++ ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 46799998865544 557763 222222235568999999999999886
No 48
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.69 E-value=0.39 Score=47.47 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHHHHHHhCC-ccEEEEEeccCCcCcccccCC
Q 002455 52 KEIALSVVSG-INSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 52 ~pLV~svL~G-~NatIfAYGQTGSGKTyTM~G 82 (920)
..++..+-.+ ....++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444444 344556667999999999975
No 49
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.53 E-value=0.69 Score=49.59 Aligned_cols=49 Identities=6% Similarity=0.158 Sum_probs=32.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
..|+||.-+.. .+..++.. +..++. ......++-||++|+||||.+.++
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHHH
Confidence 46788876654 55666654 333332 222247899999999999998653
No 50
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.01 E-value=0.61 Score=54.97 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=34.0
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..|+||.-+... +++..|. .+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 110 ~~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 110 NENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred cccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 369999977554 4555664 35555542111245 488999999999998854
No 51
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.85 E-value=1.7 Score=49.97 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEeeeee
Q 002455 46 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAME 111 (920)
Q Consensus 46 VYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~vS~lE 111 (920)
-++..+.-+...+..|....++.||.||+|||.|+ ..+++.+.........+.+-+.+
T Consensus 25 ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 25 EINQLASFLAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVEVVYINCLE 82 (366)
T ss_pred HHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCceEEEeeee
Confidence 34443433333333444444999999999999874 55566665543332244444433
No 52
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.66 E-value=0.55 Score=55.70 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=28.4
Q ss_pred HhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 49 DGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 49 ~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
......+..++..=++.|+.-|+||||||.||+.
T Consensus 244 ~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 244 PFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3355566788889999999999999999999965
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.02 E-value=4.2 Score=43.44 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002455 317 SDKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 390 (920)
Q Consensus 317 s~~~lik~Lq~Eia~Le~eL~~~~~~~s--~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~~ 390 (920)
+....+.++++|++.|+.+|........ .......+.+.+.++.+|+++.++|++++..++++++.+.......
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999988876543311 1122333445566677788888888888888888877766655443
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.31 E-value=1.3 Score=46.66 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=31.4
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..|+||.++... . +.++. .++.++.. .+.+..|+-||++|+||||-+..
T Consensus 13 ~~~~~d~f~~~~-~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE-N-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC-c-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 568999988332 2 33333 24444431 23445789999999999998754
No 55
>PRK08939 primosomal protein DnaI; Reviewed
Probab=82.31 E-value=0.76 Score=51.56 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=34.6
Q ss_pred eecceEeCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCcccccCCC
Q 002455 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 31 FtFD~VF~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM~GI 83 (920)
.+||.+-.....+..++.. +...++....| ..-.++-||++|+||||-+.++
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 4555543333356667764 56677766543 3346999999999999998654
No 56
>PRK08181 transposase; Validated
Probab=81.94 E-value=1 Score=49.68 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=26.8
Q ss_pred eCCCCChHHHHHHh-HHHHHHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 37 FWGDCSTTQVYEDG-AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 37 F~~~asQeeVYe~~-~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.++.
T Consensus 84 ~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~Aia 127 (269)
T PRK08181 84 AVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAAIG 127 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHHHH
Confidence 44554554444332 222332 4555 8899999999999987643
No 57
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.93 E-value=1 Score=52.60 Aligned_cols=52 Identities=29% Similarity=0.360 Sum_probs=34.0
Q ss_pred cCCceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 27 HLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 27 ~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
....|+||.-.... ++...|.. +..+.+..-.-||- ||-||++|+||||-|.
T Consensus 80 l~~~ytFdnFv~g~-~N~~A~aa-~~~va~~~g~~~np-lfi~G~~GlGKTHLl~ 131 (408)
T COG0593 80 LNPKYTFDNFVVGP-SNRLAYAA-AKAVAENPGGAYNP-LFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCCchhheeeCC-chHHHHHH-HHHHHhccCCcCCc-EEEECCCCCCHHHHHH
Confidence 34689999866554 55555533 44444332223554 8889999999999884
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.80 E-value=1.1 Score=46.66 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=32.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..|+||.... + .+..+++. .+.++ ..+....|+-||++|+||||....
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 3577877763 2 44556655 33332 245677899999999999998754
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.26 E-value=1.2 Score=41.26 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHhCCccEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+...+.......++-+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334456888999999999865
No 60
>PRK08727 hypothetical protein; Validated
Probab=80.21 E-value=0.97 Score=48.41 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=28.3
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCc-cEEEEEeccCCcCcccccCCC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~-NatIfAYGQTGSGKTyTM~GI 83 (920)
..|+||.-+.... + .... +..+. .|. .-.|+-||++|+||||-+..+
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~-~~~~~----~~~~~~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQ-LQALA----AGQSSDWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CcCChhhccCCcH-H--HHHH-HHHHH----hccCCCeEEEECCCCCCHHHHHHHH
Confidence 3568888764443 2 2222 12221 232 235999999999999987653
No 61
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.66 E-value=1.9 Score=53.37 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=54.6
Q ss_pred cceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCchh-------------HHHHHHHHHHhc-
Q 002455 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIHRH- 98 (920)
Q Consensus 33 FD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipr-------------al~dLF~~I~~~- 98 (920)
...=|.|.-.|..-+.. ++..+-+|....+ .+|.||||||+||..++.. ....|++.+...
T Consensus 4 ~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 4 LHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred eccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhC
Confidence 33447788888887776 4455556643323 6899999999999764332 345677666543
Q ss_pred ccCcEEEEeeeeeeecccee
Q 002455 99 EERAFVLKFSAMEIYNEAIR 118 (920)
Q Consensus 99 ~e~~f~V~vS~lEIYnE~V~ 118 (920)
++..+...|||+.-|.-..|
T Consensus 79 p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 79 PENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCeEEEEeeecccCCcccc
Confidence 44558888999999976654
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.39 E-value=1.8 Score=49.21 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
++-++.+..-+ ..++ .+....++-||++|+|||+++
T Consensus 36 e~e~~~l~~~l-~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 36 EEQIEELAFAL-RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHH-HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 44444433333 3333 345566899999999999975
No 63
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.05 E-value=1.8 Score=48.74 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.5
Q ss_pred CCccEEEEEeccCCcCccccc
Q 002455 60 SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM 80 (920)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345568999999999999975
No 64
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.42 E-value=0.98 Score=41.47 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.8
Q ss_pred EEEeccCCcCcccccCC
Q 002455 66 IFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~G 82 (920)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999865
No 65
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=76.66 E-value=5.9 Score=46.15 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=49.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhC----CccEEEEEeccCCcCccccc-----------------------C
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVS----GINSSIFAYGQTSSGKTYTM-----------------------T 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~----G~NatIfAYGQTGSGKTyTM-----------------------~ 81 (920)
.++.||.+.+.----..+.+.++..++.+.+. -.--.+.-||+.|+|||+.. .
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 56788888766555566777777777777773 23345788999999999985 2
Q ss_pred CCchhHHHHHHHHHHh
Q 002455 82 GITECTVADIFDYIHR 97 (920)
Q Consensus 82 GIipral~dLF~~I~~ 97 (920)
|-.++.++++|.....
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4455678888876654
No 66
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=76.44 E-value=2.1 Score=46.94 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=69.7
Q ss_pred eecceEeCCCCChHHHHHHhHHHHHHHHhCCccEE-EEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEeee
Q 002455 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSS-IFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSA 109 (920)
Q Consensus 31 FtFD~VF~~~asQeeVYe~~~~pLV~svL~G~Nat-IfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~vS~ 109 (920)
..+|...+-+...+.+.+.+ ..+++|..+- ++-||..|+|||.++-++ ........ +..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y~~~G-------LRl 83 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEYADQG-------LRL 83 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHHhhcC-------ceE
Confidence 34455555443333344332 4677777653 677999999999876443 32222222 556
Q ss_pred eeeeccceeecC------CCCCCCceeeeCCCCCeEeccceEEE-eCCHHHHHHHHHHHHhhccccccccccCCCCceeE
Q 002455 110 MEIYNEAIRDLL------STDNTPLRLLDDPEKGVVVEKVTEEI-LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQI 182 (920)
Q Consensus 110 lEIYnE~V~DLL------s~~~~~L~i~ed~~~g~~V~gLte~~-V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~I 182 (920)
+||..+.+.||- .......- +++.+|+-.. =.+...+..+|..|...| .....+.++|.|-|.|
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFI--------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFI--------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEE--------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 888888766663 21111111 2334444221 123566777777666555 4556677788888876
No 67
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.71 E-value=1.8 Score=42.53 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=19.9
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
++..+++|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4445567777 6788999999999864
No 68
>PRK06921 hypothetical protein; Provisional
Probab=75.64 E-value=1.9 Score=47.34 Aligned_cols=35 Identities=31% Similarity=0.261 Sum_probs=24.5
Q ss_pred hHHHHHHHHhC---CccEEEEEeccCCcCcccccCCCc
Q 002455 50 GAKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 50 ~~~pLV~svL~---G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
.+...++++-. +..-.|+-||++|+||||.+..|.
T Consensus 101 ~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 101 CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHH
Confidence 35566665532 234568889999999999986543
No 69
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.52 E-value=2.6 Score=49.79 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=35.4
Q ss_pred CCceecceEeCCCCChHHHHHHhHHHHHHHH--hCC--ccEEEEEeccCCcCcccccCCC
Q 002455 28 LPIHLIDRVFWGDCSTTQVYEDGAKEIALSV--VSG--INSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 28 ~ksFtFD~VF~~~asQeeVYe~~~~pLV~sv--L~G--~NatIfAYGQTGSGKTyTM~GI 83 (920)
...|+||.-+-.. +++..|. .+..+.... ..| ||. +|-||++|+||||.+..+
T Consensus 105 ~~~~tFdnFv~g~-~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 105 DPLMTFANFLVTP-ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred CccccccceeeCC-cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHHH
Confidence 3679999877644 5555553 366665433 223 454 678999999999988643
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=74.50 E-value=2.5 Score=48.82 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=30.5
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHH-HHhC--C--ccEEEEEeccCCcCccccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~-svL~--G--~NatIfAYGQTGSGKTyTM 80 (920)
.++||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666655543344555555444443 2222 2 2345889999999999876
No 71
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=74.03 E-value=7.5 Score=42.37 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=33.9
Q ss_pred EeCCHHHHHHHHHHHHhhccccccccccCCCCceeEEEEEEEeccccccCCCCcceEEEEEEEEEcCCCccc
Q 002455 147 ILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERA 218 (920)
Q Consensus 147 ~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~e~~~~~~~~~~~SkL~fVDLAGSER~ 218 (920)
.+.+++++...+...... ..+. ...-|.-+++|.|.... .-.+.||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~------------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH------------VLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC------------CCceEEEeCCCcccc
Confidence 346788888888765432 1111 12345668888886532 134899999999654
No 72
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.89 E-value=1.5 Score=55.59 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=17.9
Q ss_pred CCccEEEEEeccCCcCcccccC
Q 002455 60 SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.|-+.+||-||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678899999999999864
No 73
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=72.93 E-value=1.6 Score=52.90 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.0
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.+..++..-++.|+..|+||||||+||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566677788899999999999999854
No 74
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.68 E-value=1.6 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=15.9
Q ss_pred EEEEEeccCCcCcccccCC
Q 002455 64 SSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~G 82 (920)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3578899999999999854
No 75
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.64 E-value=1.9 Score=51.39 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.+..++..-++.|+-.|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45556677777899999999999999854
No 76
>PRK10436 hypothetical protein; Provisional
Probab=72.58 E-value=1.8 Score=51.34 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.+..++..-++.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45556667788899999999999999853
No 77
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.31 E-value=2.5 Score=46.15 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=33.1
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
+|.|..+=.....+..+|.. +..++..+-+|.| ++-||++|+||||-..+|
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHHH
Confidence 34333333334466778866 5666666654444 577999999999998654
No 78
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=71.44 E-value=1.3 Score=46.65 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=15.8
Q ss_pred EEEeccCCcCcccccCCCchhH
Q 002455 66 IFAYGQTSSGKTYTMTGITECT 87 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~GIipra 87 (920)
+.-+|.||||||+|+.-++...
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l 47 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEEL 47 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999986544433
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=71.22 E-value=1.5 Score=41.40 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=12.9
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999886
No 80
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.21 E-value=2.3 Score=48.37 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
+.+..++.--.+.|+-.|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455555544457789999999999999853
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=70.95 E-value=3.3 Score=46.82 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=29.6
Q ss_pred eCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCccccc
Q 002455 37 FWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 37 F~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM 80 (920)
|.|.+.-+-++++.+..++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3344444556666566666655555 4445788999999999997
No 82
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=70.44 E-value=3.7 Score=47.01 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.++..++.+. +.|+-.|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444455555 77888999999999988
No 83
>PF12846 AAA_10: AAA-like domain
Probab=70.28 E-value=1.5 Score=47.00 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.5
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
|.-++..|.||||||++|.-
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45678889999999998854
No 84
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.03 E-value=1.9 Score=45.03 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
+.|+-.|+||||||+++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568889999999999974
No 85
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.36 E-value=2.4 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.0
Q ss_pred EEEEEeccCCcCcccccCCCc
Q 002455 64 SSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GIi 84 (920)
-.++-||++|+||||...++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHH
Confidence 458899999999999986543
No 86
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=69.24 E-value=30 Score=35.48 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 319 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 319 ~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
....++|++|+..|+.|+...... ++++ .--+.+.++.++++|++++.+++...+..+......+-
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~q---DeFA-kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQ---DEFA-KWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TT---TSHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999875433 3343 33345778888999999999998888887776665544
No 87
>PF13245 AAA_19: Part of AAA domain
Probab=69.19 E-value=2.5 Score=37.87 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
|..++.| +..++-.|+.|||||+|+..
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHHH
Confidence 4444552 33344479999999999753
No 88
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.17 E-value=2.7 Score=48.59 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
+++.++. .++.|+-.|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3344433 455678899999999999743
No 89
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=69.09 E-value=2.1 Score=46.40 Aligned_cols=29 Identities=38% Similarity=0.480 Sum_probs=19.0
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.+++...+.+ .+.|+-.|.||||||.+|.
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 3334333333 4556667999999999973
No 90
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.66 E-value=2.8 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.9
Q ss_pred HhCCccEEEEEeccCCcCcccccCC
Q 002455 58 VVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 58 vL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
++.--.+.|+-.|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3444568899999999999999754
No 91
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=68.32 E-value=4 Score=47.54 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=33.9
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHH-HHhC--C--ccEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~-svL~--G--~NatIfAYGQTGSGKTyTM 80 (920)
...+|+.|-+.+..-+++.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3556777777654445565555555553 2333 2 2456889999999999987
No 92
>PRK09183 transposase/IS protein; Provisional
Probab=66.74 E-value=2.6 Score=46.05 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=27.2
Q ss_pred cceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 33 FD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
||.=|.+..+...+..-..... +-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 3444556655554443222222 234554 567899999999998654
No 93
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.00 E-value=3.3 Score=45.51 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.+..++..-.+.|+-.|+||||||.||..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34555555556678889999999999854
No 94
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.85 E-value=4.3 Score=45.16 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..+++..+.--.-+.|+-.|.|||||+.||.
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4456667666777789999999999999994
No 95
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=64.30 E-value=3.2 Score=43.35 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=18.6
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.+..++...+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3444554443344557999999999874
No 96
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=63.67 E-value=4.5 Score=43.34 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=17.3
Q ss_pred hCCccEEEEEeccCCcCcccccC
Q 002455 59 VSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 59 L~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+......++-+|+.|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44345567889999999998753
No 97
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=6.3 Score=45.48 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHH-HHh--CCccE--EEEEeccCCcCccccc-----------------------CCCchhHHHHHHHHH
Q 002455 44 TQVYEDGAKEIAL-SVV--SGINS--SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYI 95 (920)
Q Consensus 44 eeVYe~~~~pLV~-svL--~G~Na--tIfAYGQTGSGKTyTM-----------------------~GIipral~dLF~~I 95 (920)
++|.+.+-.||.+ ..+ -|+.- .|+.||+.|+|||-.- .|--+|.++++|...
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA 240 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA 240 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH
Confidence 4566666666654 222 25543 5899999999998654 255578899999887
Q ss_pred Hhccc
Q 002455 96 HRHEE 100 (920)
Q Consensus 96 ~~~~e 100 (920)
..+..
T Consensus 241 rekaP 245 (406)
T COG1222 241 REKAP 245 (406)
T ss_pred hhcCC
Confidence 76653
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.68 E-value=3.1 Score=43.73 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.7
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999974
No 99
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=62.42 E-value=11 Score=44.80 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=28.5
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHH-HHhC--C--ccEEEEEeccCCcCcccccC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~-svL~--G--~NatIfAYGQTGSGKTyTM~ 81 (920)
..+||.|.+.+...+++.+ .+..+-. ..+. | ..-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 5677877765543333332 2222111 0111 2 22358889999999999873
No 100
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.34 E-value=5 Score=45.45 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=20.1
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.++..++.+. ..|+-.|.||||||++|..
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 4555566554 4456669999999987744
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.11 E-value=3.4 Score=38.67 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.2
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999874
No 102
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.63 E-value=6.2 Score=43.63 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=27.5
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.-+||.+.+ ++++.+. +...+-.|....++-||++|+|||+++..
T Consensus 11 P~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 11 PALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CCcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 446777765 3444333 22222244434578899999999998743
No 103
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=60.98 E-value=5 Score=41.05 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=19.1
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCCCch
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTGITE 85 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~GIip 85 (920)
.|..++..-. ..+..|+.|||||+|+..++-
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHHHHH
Confidence 3445554333 455579999999999876443
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.70 E-value=3.5 Score=46.99 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=29.7
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHH-HHhC--Cc--cEEEEEeccCCcCcccccC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~-svL~--G~--NatIfAYGQTGSGKTyTM~ 81 (920)
..++||.|.+-+..-+++.+.+..|+.. ..+. |. ...|+-||++|+|||+...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 3455666655443334444444444332 1111 22 3458999999999998864
No 105
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=60.63 E-value=69 Score=40.09 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
-.||.- |......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 347754 555555555 599999999999999999885
No 106
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=60.47 E-value=3.8 Score=42.00 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=20.3
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+...+-.|.+..++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 33444444566788999999999999876
No 107
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=60.07 E-value=95 Score=39.25 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.||.- |......++ .|.|-||+.-|.+|||||.|.-
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHHH
Confidence 46754 444444444 6999999999999999999863
No 108
>PF13479 AAA_24: AAA domain
Probab=59.99 E-value=4.4 Score=42.79 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.6
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998743
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.87 E-value=5.9 Score=38.75 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHhCCccEEEEEeccCCcCcccccCC
Q 002455 56 LSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 56 ~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
..++.+. ..++..|+||||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 3456678999999998754
No 110
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.54 E-value=4.7 Score=45.15 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=20.7
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..++..++.+ ...|+-.|+||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 3457788999999999874
No 111
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=59.36 E-value=2.6 Score=43.71 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.1
Q ss_pred EEEEeccCCcCcccccCCC
Q 002455 65 SIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GI 83 (920)
-++.+|+||||||.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp SEEEE--TTSSHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHH
Confidence 5788999999999998643
No 112
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=59.12 E-value=4.3 Score=38.00 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.9
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999874
No 113
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=59.02 E-value=14 Score=46.97 Aligned_cols=24 Identities=42% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..+.+|.|+.|.| +||||||-+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH
Confidence 34567999999999 9999998773
No 114
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.99 E-value=9.4 Score=44.50 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.0
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
...|+.+|+||+|||+|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999743
No 115
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=20 Score=39.89 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=42.5
Q ss_pred EeCCCCChHHHHHHhHHHHHHHHh---CCcc--EEEEEeccCCcCccccc-----------------------CCCchhH
Q 002455 36 VFWGDCSTTQVYEDGAKEIALSVV---SGIN--SSIFAYGQTSSGKTYTM-----------------------TGITECT 87 (920)
Q Consensus 36 VF~~~asQeeVYe~~~~pLV~svL---~G~N--atIfAYGQTGSGKTyTM-----------------------~GIipra 87 (920)
|=+-+..-++|-+.+-.|+...-+ =|++ -.|+.||+.|+|||--. .|--||.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprm 236 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRM 236 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHH
Confidence 333344455677776667665444 2443 35899999999997433 2566889
Q ss_pred HHHHHHHHHhcc
Q 002455 88 VADIFDYIHRHE 99 (920)
Q Consensus 88 l~dLF~~I~~~~ 99 (920)
++|+|....++.
T Consensus 237 vrdvfrlakena 248 (408)
T KOG0727|consen 237 VRDVFRLAKENA 248 (408)
T ss_pred HHHHHHHHhccC
Confidence 999998776544
No 116
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=58.32 E-value=4.1 Score=40.55 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=18.2
Q ss_pred hCCccEEEEEeccCCcCcccccCCCchhHHHHHHHHHHhc
Q 002455 59 VSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH 98 (920)
Q Consensus 59 L~G~NatIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~ 98 (920)
..|-...|+-+|..|+|||+.+ ..++..+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll--------~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL--------RALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH--------HHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH--------HHHHHHHHhc
Confidence 4666778999999999999874 4555555544
No 117
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.74 E-value=9.7 Score=42.18 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=16.0
Q ss_pred EEEEeccCCcCcccccCCCc
Q 002455 65 SIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIi 84 (920)
.|.-.|+||+|||+|+..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56666999999999986543
No 118
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=57.69 E-value=6.2 Score=44.95 Aligned_cols=29 Identities=34% Similarity=0.310 Sum_probs=19.4
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..++..++.+. ..|+-.|+||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34454444433 336677999999999874
No 119
>PHA00729 NTP-binding motif containing protein
Probab=57.40 E-value=9 Score=41.55 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=25.6
Q ss_pred hHHHHHHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 50 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 50 ~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
.++.++..+..|--..|+.+|.+|+||||-...+.
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 35566766665444579999999999999876543
No 120
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=56.97 E-value=7.9 Score=44.02 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.++..++.+. ..|+-.|.||||||++|.-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA 163 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 3444444432 2467789999999999743
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.89 E-value=7.6 Score=42.90 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCc-cEEEEEeccCCcCcccccCC
Q 002455 60 SGI-NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 60 ~G~-NatIfAYGQTGSGKTyTM~G 82 (920)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45677799999999998753
No 122
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.88 E-value=7.7 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=26.8
Q ss_pred CChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 41 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 41 asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..|+.+|+.+...+.. .+| ..+|.-|+-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence 4688899886655443 344 46688999999999985
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.83 E-value=77 Score=28.65 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 321 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
.|..|+.|+..|+.+-. ....+...|+.+...|+.++...+.++..|+.++.
T Consensus 19 ti~~Lq~e~eeLke~n~----------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN----------------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566666666665431 22255677888999999999999999999888764
No 124
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=56.42 E-value=5.4 Score=39.62 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=16.6
Q ss_pred EEEE-eccCCcCcccccCCCchhHHHHHHH
Q 002455 65 SIFA-YGQTSSGKTYTMTGITECTVADIFD 93 (920)
Q Consensus 65 tIfA-YGQTGSGKTyTM~GIipral~dLF~ 93 (920)
.|++ .|+||+||||+- ..+.+.||.
T Consensus 54 LVlSfHG~tGtGKn~v~----~liA~~ly~ 79 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS----RLIAEHLYK 79 (127)
T ss_pred EEEEeecCCCCcHHHHH----HHHHHHHHh
Confidence 3544 599999999974 234455564
No 125
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=56.26 E-value=9.6 Score=42.50 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.8
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
-.|+-||++|+|||.+-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 36899999999999876
No 126
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=56.23 E-value=7.9 Score=47.63 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=1.1
Q ss_pred HHHHHHHHHHHhhhcccceeecceeeeeecCCCCCcee--EEeeehhhh
Q 002455 743 FERQRRELFQLWQTCNVSLVHRTYFFLLFRGDPSDSIY--MGVELKRLS 789 (920)
Q Consensus 743 F~~~~~eIIeLW~~C~VslvHRTyFfLLfkGD~~D~iY--mEVElRRL~ 789 (920)
.++.|.+|-+||+.|++|--.|..|--.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47889999999999999999999988888766666654 899998874
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.74 E-value=8.1 Score=39.47 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=16.8
Q ss_pred HHHhCCccEEEEEeccCCcCcccc
Q 002455 56 LSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 56 ~svL~G~NatIfAYGQTGSGKTyT 79 (920)
+.++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44455887 46677999999987
No 128
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=55.38 E-value=6.3 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccCCCchh
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC 86 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipr 86 (920)
+..++..+.+|....++. .+||||||+||.+++-+
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~li~~ 456 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIALMYR 456 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHHHHHH
Confidence 344455555676554444 89999999999765433
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=55.23 E-value=8.2 Score=47.49 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+..+||.+++.+ .... .++..+..++...|+-||++|+|||+...
T Consensus 149 rp~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 149 RPRAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcCcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 456788887643 2222 24455566788889999999999998753
No 130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.32 E-value=8 Score=39.82 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+++..++.. ...+.-.|+||||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 344444443 2346667999999999873
No 131
>PTZ00424 helicase 45; Provisional
Probab=54.28 E-value=7.5 Score=44.25 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+..+++|.|.. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4455678899864 5689999999764
No 132
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=53.63 E-value=5.8 Score=38.09 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.3
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 133
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=53.00 E-value=8.7 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.7
Q ss_pred HHHHhCCccEEEEEeccCCcCcccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyT 79 (920)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 344568888 66777999999966
No 134
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=14 Score=41.88 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHH-HHHhCCcc---EEEEEeccCCcCccccc-----------------------CCCchhHHHHHHHHHH
Q 002455 44 TQVYEDGAKEIA-LSVVSGIN---SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIH 96 (920)
Q Consensus 44 eeVYe~~~~pLV-~svL~G~N---atIfAYGQTGSGKTyTM-----------------------~GIipral~dLF~~I~ 96 (920)
+.+=+.+..|+- -.++.|-- ..|+.||+.|+||+|-- +|--+..+..||+...
T Consensus 143 eALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR 222 (439)
T KOG0739|consen 143 EALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR 222 (439)
T ss_pred HHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444442 36666654 67999999999999965 3666788999999887
Q ss_pred hccc
Q 002455 97 RHEE 100 (920)
Q Consensus 97 ~~~e 100 (920)
++..
T Consensus 223 e~kP 226 (439)
T KOG0739|consen 223 ENKP 226 (439)
T ss_pred hcCC
Confidence 7654
No 135
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=51.72 E-value=5.1 Score=37.64 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEeccCCcCcccccCCCchhHHHHHHHHH
Q 002455 66 IFAYGQTSSGKTYTMTGITECTVADIFDYI 95 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~GIipral~dLF~~I 95 (920)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----HHHHHHHHHh
Confidence 5789999999999864 3455555544
No 136
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.66 E-value=5.9 Score=38.24 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.3
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 137
>PF14282 FlxA: FlxA-like protein
Probab=51.37 E-value=76 Score=30.46 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 319 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 381 (920)
Q Consensus 319 ~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e 381 (920)
...|+.|+++|..|..+|.......... -..+..+++.|..+|..|+.++..++.+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~-----~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLD-----AEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999987654421111 134556667777777777777776655443
No 138
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=51.25 E-value=9.2 Score=40.85 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=22.2
Q ss_pred ccEEEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEeeeeee
Q 002455 62 INSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEI 112 (920)
Q Consensus 62 ~NatIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~vS~lEI 112 (920)
.+-.+++.|+.||||||.. +..-.+.+....-..+.+.-..+++
T Consensus 18 ~~~~v~~~G~AGTGKT~LA-------~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA-------LAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH-------HHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred hCCeEEEECCCCCcHHHHH-------HHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4557999999999999864 2222233333333455555555554
No 139
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=51.02 E-value=7.7 Score=39.94 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.5
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999953
No 140
>PRK11637 AmiB activator; Provisional
Probab=50.63 E-value=75 Score=37.28 Aligned_cols=26 Identities=12% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 358 QIQKMEREIRELTKQRDLAQSRVEDL 383 (920)
Q Consensus 358 ~i~kle~ei~el~~q~d~~q~r~e~l 383 (920)
+|..++++|.+++.+++.++.+++.+
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 141
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=50.27 E-value=11 Score=46.71 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHH-hCCccEEEEEeccCCcCccccc
Q 002455 45 QVYEDGAKEIALSV-VSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 45 eVYe~~~~pLV~sv-L~G~NatIfAYGQTGSGKTyTM 80 (920)
.||.. |......+ ..|.|-||+-.|.+|||||.++
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 47755 44444444 4689999999999999999985
No 142
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=50.25 E-value=10 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445668887 788889999999874
No 143
>PRK06547 hypothetical protein; Provisional
Probab=49.90 E-value=15 Score=37.96 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=20.3
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..++..+..+.---|.-+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555556677799999999865
No 144
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.57 E-value=4.2 Score=50.41 Aligned_cols=84 Identities=27% Similarity=0.422 Sum_probs=41.2
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCCCc--hhHHHHHHHHHHhcccCcEEEE
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT--ECTVADIFDYIHRHEERAFVLK 106 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIi--pral~dLF~~I~~~~e~~f~V~ 106 (920)
..+.|+++......+..-+.. +.+-+..++++++.. +|++|++.+-- -..+..++..+.......-..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS- 95 (670)
T ss_pred cccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc-
Confidence 455666665543222222222 223334445555553 89999997611 122333333222111111111
Q ss_pred eeeeeeeccceeecCCC
Q 002455 107 FSAMEIYNEAIRDLLST 123 (920)
Q Consensus 107 vS~lEIYnE~V~DLLs~ 123 (920)
..++.|++.+.|++..
T Consensus 96 -~~~~~~~~~~~~~~~~ 111 (670)
T KOG0239|consen 96 -NVVEAYNERLRDLLSE 111 (670)
T ss_pred -hhHHHHHHHHhhhccc
Confidence 1688899999999864
No 145
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=49.30 E-value=6.3 Score=42.52 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.0
Q ss_pred ccEEEEEeccCCcCcccccC
Q 002455 62 INSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 62 ~NatIfAYGQTGSGKTyTM~ 81 (920)
.++.++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 56667777889999999984
No 146
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.11 E-value=11 Score=46.83 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=29.4
Q ss_pred CccEEEEEeccCCcCccccc-----------------------CCCchhHHHHHHHHHHhcc
Q 002455 61 GINSSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 99 (920)
Q Consensus 61 G~NatIfAYGQTGSGKTyTM-----------------------~GIipral~dLF~~I~~~~ 99 (920)
-..+.|+-||+.|+||||-. .|--+..+++||.......
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 34566999999999999976 2555678888998766433
No 147
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=48.94 E-value=7.6 Score=36.13 Aligned_cols=16 Identities=38% Similarity=0.266 Sum_probs=13.5
Q ss_pred EEEeccCCcCcccccC
Q 002455 66 IFAYGQTSSGKTYTMT 81 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~ 81 (920)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6778999999998764
No 148
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=7.4 Score=44.26 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=50.6
Q ss_pred cCCceecceEeCCCCChHHHHHHhHHHHHHHHh-C--CccE--EEEEeccCCcCccccc------C--------------
Q 002455 27 HLPIHLIDRVFWGDCSTTQVYEDGAKEIALSVV-S--GINS--SIFAYGQTSSGKTYTM------T-------------- 81 (920)
Q Consensus 27 ~~ksFtFD~VF~~~asQeeVYe~~~~pLV~svL-~--G~Na--tIfAYGQTGSGKTyTM------~-------------- 81 (920)
....|+||.|-+...--.++-+.+..|++...+ . |+.. .+.-||+.|+|||+-. +
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 346788888877554444555666777776444 2 4332 4788999999999865 1
Q ss_pred ---CCchhHHHHHHHHHHhccc
Q 002455 82 ---GITECTVADIFDYIHRHEE 100 (920)
Q Consensus 82 ---GIipral~dLF~~I~~~~e 100 (920)
|-..|.+++.|.+...+..
T Consensus 205 kyiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCc
Confidence 4445788999998887654
No 149
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.63 E-value=7 Score=44.79 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=18.9
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.++..++.+ ...|+-.|+||||||++|.
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 344444432 2346777999999999984
No 150
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=48.49 E-value=27 Score=40.51 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=47.7
Q ss_pred CCccEEEEEeccCCcCcccccCCCchhHHHHHHHH-HHhc----------ccCcEEEEeeeeeeeccceeecCCCCCCCc
Q 002455 60 SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDY-IHRH----------EERAFVLKFSAMEIYNEAIRDLLSTDNTPL 128 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM~GIipral~dLF~~-I~~~----------~e~~f~V~vS~lEIYnE~V~DLLs~~~~~L 128 (920)
.|+.-+|+..|+.|+|||.-+ ..||.. +... ......+..+-.+|-.+.+ .-.+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi--------NtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~-------~~~l 84 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI--------NTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF-------HLNL 84 (373)
T ss_pred cCCceEEEEecCCCCchhHHH--------HhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe-------EEEE
Confidence 699999999999999999754 333332 1111 1123344444444433311 1245
Q ss_pred eeeeCCCCCeEeccceEEEeCCHHHHHHHHHHHH
Q 002455 129 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICE 162 (920)
Q Consensus 129 ~i~ed~~~g~~V~gLte~~V~S~ee~~~lL~~g~ 162 (920)
.+.+.|.=|-.|.+ -.+|+-+..+|..-.
T Consensus 85 ~vIDtpGfGD~idN-----s~~we~I~~yI~~q~ 113 (373)
T COG5019 85 TVIDTPGFGDFIDN-----SKCWEPIVDYIDDQF 113 (373)
T ss_pred EEeccCCccccccc-----cccHHHHHHHHHHHH
Confidence 56666766666665 246777777665433
No 151
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=48.48 E-value=11 Score=45.44 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCcc--EEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGIN--SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~N--atIfAYGQTGSGKTyTM 80 (920)
++..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5666777666653 56888999999999997
No 152
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.85 E-value=17 Score=40.42 Aligned_cols=30 Identities=33% Similarity=0.364 Sum_probs=23.5
Q ss_pred hHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 50 GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 50 ~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 181 fa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 181 FAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 355555 556667778899999999999988
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.76 E-value=36 Score=37.88 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 321 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
.+.+++++...++.++...... ..+......+.+.+|.+.+.+|++++++++.+.+++.+....+.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~q--i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQ--IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444322111 122344455666777778888888888888888887766666555
No 154
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.76 E-value=38 Score=33.42 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002455 358 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 391 (920)
Q Consensus 358 ~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~~~ 391 (920)
+++....++..|+.+.+.++.|.+.++.++|+..
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 4455567777888888888899999999888753
No 155
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.49 E-value=13 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEEeccCCcCccccc-------CCCchhH
Q 002455 64 SSIFAYGQTSSGKTYTM-------TGITECT 87 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM-------~GIipra 87 (920)
+.+.-+|+||||||..+ +|-.|+.
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~~ 57 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPRR 57 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45567899999998776 6776653
No 156
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.38 E-value=12 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..++.|.|. ++.++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 3456789885 55669999999864
No 157
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.75 E-value=13 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHhCCccEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+..++.|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 44557789975 55569999999764
No 158
>PRK13764 ATPase; Provisional
Probab=46.73 E-value=9.9 Score=46.72 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.7
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34488999999999999854
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=46.56 E-value=8.5 Score=44.26 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=30.3
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..|.|..|-+. ++ .-.-|+..+.+..-+.|+-+|.+||||||.+.
T Consensus 12 ~~~pf~~ivGq----~~----~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVGQ----EE----MKLALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhCh----HH----HHHHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 36788877764 33 33445555555443568899999999999864
No 160
>PLN03025 replication factor C subunit; Provisional
Probab=46.19 E-value=14 Score=41.43 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.1
Q ss_pred CccEEEEEeccCCcCcccccCCC
Q 002455 61 GINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 61 G~NatIfAYGQTGSGKTyTM~GI 83 (920)
|.-..++-||+.|+|||++...+
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 33334667999999999998653
No 161
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.15 E-value=16 Score=42.89 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHHHHhCCc----cEEEEEeccCCcCcccccC
Q 002455 44 TQVYEDGAKEIALSVVSGI----NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 44 eeVYe~~~~pLV~svL~G~----NatIfAYGQTGSGKTyTM~ 81 (920)
...|.....-++..+.+-. ..-|.-.||||.|||+|+.
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3445454444444444442 5567778999999999984
No 162
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=45.82 E-value=14 Score=46.05 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=23.9
Q ss_pred hHHHHHHHHhC-----CccEEEEEeccCCcCcccccCCCc
Q 002455 50 GAKEIALSVVS-----GINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 50 ~~~pLV~svL~-----G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
++..+++.+.. |.+..|+.. +||||||+||..++
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la 284 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAA 284 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHH
Confidence 46677777766 344555443 89999999997643
No 163
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=45.82 E-value=9.5 Score=39.65 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=15.2
Q ss_pred CccEEEEEeccCCcCcccccC
Q 002455 61 GINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 61 G~NatIfAYGQTGSGKTyTM~ 81 (920)
..-..||..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344578889999999998764
No 164
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.73 E-value=21 Score=38.73 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.1
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
...|+-||++|+|||++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 34578899999999998643
No 165
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.55 E-value=14 Score=43.56 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=18.8
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..+++|.| |++..+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678988 567779999999874
No 166
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=45.34 E-value=61 Score=37.92 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcccceEeccCC
Q 002455 236 RSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 285 (920)
Q Consensus 236 kSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISP 285 (920)
.-|..+-.++..-++++ ++.+|+---=+-|.+.+|.+++ ++||.+..
T Consensus 194 e~l~~F~~l~~~T~~R~--~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 194 EELDDFYDLYKETAERK--GFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHT--T-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred HHHHHHHHHHHHHHhhC--CCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 34777777777776643 4566665544555667766654 77888744
No 167
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.07 E-value=55 Score=36.10 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Q 002455 320 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME------REIRELTKQ-RDLAQSRVEDLLRMVGCDQD 392 (920)
Q Consensus 320 ~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle------~ei~el~~q-~d~~q~r~e~l~~~~~~~~~ 392 (920)
..|..|++||++|+..|... ..++-+++.+|-.|. ++++.+.++ .+.++.+.++.++.+.....
T Consensus 225 V~i~~lkeeia~Lkk~L~qk---------dq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQK---------DQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999988532 233445555554432 334444444 56677777777777766543
No 168
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.87 E-value=14 Score=42.19 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=25.9
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCcccccC
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM~ 81 (920)
+||.|.+ |+.+-+ .+...+..| ..-+++-||+.|+|||++..
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHHH
Confidence 5666654 333332 233333444 45568899999999998763
No 169
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.60 E-value=14 Score=43.36 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCCCCccCCceecceEeCCCCChHHHHHHhHH-------HHHH----HHhCCccEEEEEeccCCcCcccc--cCC
Q 002455 21 GKDPHFHLPIHLIDRVFWGDCSTTQVYEDGAK-------EIAL----SVVSGINSSIFAYGQTSSGKTYT--MTG 82 (920)
Q Consensus 21 g~~~~~~~ksFtFD~VF~~~asQeeVYe~~~~-------pLV~----svL~G~NatIfAYGQTGSGKTyT--M~G 82 (920)
|...-.+..+.+||..|... .+|.+.+-+ |+-. =+|+|.+.+..| |||+|||-. |.|
T Consensus 209 gekrpIPnP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~L~pg 278 (629)
T KOG0336|consen 209 GEKRPIPNPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAFLLPG 278 (629)
T ss_pred CCcccCCCCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHHhccc
Confidence 34444556788999999744 456655433 1111 247999987777 999999854 456
No 170
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=44.42 E-value=7.7 Score=45.19 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.3
Q ss_pred cEEEEEeccCCcCcccccCCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~GI 83 (920)
+--++.+|+||||||..|..+
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l 62 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIREL 62 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHH
Confidence 345788999999999875443
No 171
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.13 E-value=14 Score=42.31 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=36.4
Q ss_pred cCCCCCCccCCceecceEeCCCCChHHHHHH-hHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 19 PFGKDPHFHLPIHLIDRVFWGDCSTTQVYED-GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 19 ~~g~~~~~~~ksFtFD~VF~~~asQeeVYe~-~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.||-+.......|.-.+.+-|..+..-+|+. +.+.++..+.. +.-|+-.|++|+|||...
T Consensus 21 ~Fg~~~~~~v~~f~~~~~~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 21 AFGFDSDMKVPAFSHRDEHVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred hcCCCCCCcccCcCCCCCCCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 4555544444555555555565555556653 34445544443 345888999999999764
No 172
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=44.09 E-value=39 Score=37.22 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=36.0
Q ss_pred hHHHHHHHHhC---CccEEEEEeccCCcCcccccCCCchhHHHHHHHHHHhc-ccCcEEEEeeeeeee
Q 002455 50 GAKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH-EERAFVLKFSAMEIY 113 (920)
Q Consensus 50 ~~~pLV~svL~---G~NatIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~-~e~~f~V~vS~lEIY 113 (920)
.+..+++-+.+ .-+.+|.-||+=|||||+.| +.+.+.+... ...-+.|.++.++.-
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccCC
Confidence 34444444443 56788999999999999864 4556666655 334555666665543
No 173
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.75 E-value=10 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.2
Q ss_pred cEEEEEeccCCcCcccccCCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~GI 83 (920)
...|+-+|+||+|||+|+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456778999999999998654
No 174
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.72 E-value=18 Score=39.61 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.0
Q ss_pred CCccEEEEEeccCCcCcccccC
Q 002455 60 SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.|...-++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444457889999999998864
No 175
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=43.34 E-value=13 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.4
Q ss_pred EEEEeccCCcCcccccCCCc
Q 002455 65 SIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIi 84 (920)
.++-.|++|||||||+..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999987654
No 176
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=43.15 E-value=29 Score=41.17 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=42.7
Q ss_pred ccCCceecceEeCCCCChHHHHHHhHHHHHHHH-h----CCccEEEEEeccCCcCccccc--------------------
Q 002455 26 FHLPIHLIDRVFWGDCSTTQVYEDGAKEIALSV-V----SGINSSIFAYGQTSSGKTYTM-------------------- 80 (920)
Q Consensus 26 ~~~ksFtFD~VF~~~asQeeVYe~~~~pLV~sv-L----~G~NatIfAYGQTGSGKTyTM-------------------- 80 (920)
+....++|+.+-+-+.-.+.+.+.+..++...- + -+....|+-||+.|+|||+.-
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 344455666665533333444444444443222 2 245557999999999999876
Q ss_pred ---CCCchhHHHHHHHHHH
Q 002455 81 ---TGITECTVADIFDYIH 96 (920)
Q Consensus 81 ---~GIipral~dLF~~I~ 96 (920)
.|-....++.+|....
T Consensus 314 sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 314 SKWVGESEKNIRELFEKAR 332 (494)
T ss_pred ccccchHHHHHHHHHHHHH
Confidence 2445566777777665
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=42.94 E-value=16 Score=43.53 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=19.0
Q ss_pred CCCCcccceEeccCCCcchHHHHHHHHHHH
Q 002455 271 LGGNARTAIICTLSPARSHVEQTRNTLLFA 300 (920)
Q Consensus 271 LGGNskT~mIatISPs~~~~eETLsTLrFA 300 (920)
+.-..+..||||+..++.. +..|.+|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~A 345 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYA 345 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHH
Confidence 4557889999999988754 3456655
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=42.89 E-value=25 Score=44.11 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=29.6
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHH-HHhC--Cc--cEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~-svL~--G~--NatIfAYGQTGSGKTyTM 80 (920)
..++||.|-+-+..-+.+.+.+..|+-. .+++ |+ ...|+-||++|+|||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 4567777665443333444443333321 1222 21 246889999999999876
No 179
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=42.87 E-value=17 Score=40.79 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..+++..++.+. ..|+-.|+||||||+.|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345555566544 345566999999999863
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.77 E-value=57 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 355 KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 385 (920)
Q Consensus 355 kd~~i~kle~ei~el~~q~d~~q~r~e~l~~ 385 (920)
++..|..|++++++-.+..+.+..++..+.+
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554443
No 181
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.75 E-value=31 Score=37.68 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCChHHHHHHhHHHHHHHHhC-C-ccEEEEEeccCCcCcccc
Q 002455 39 GDCSTTQVYEDGAKEIALSVVS-G-INSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 39 ~~asQeeVYe~~~~pLV~svL~-G-~NatIfAYGQTGSGKTyT 79 (920)
+-.-|+++-.. .+.++..+.. | .-..++-||+.|.|||.-
T Consensus 25 efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 25 EFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34467888866 6667777653 2 334688899999999753
No 182
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=42.52 E-value=18 Score=43.80 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=29.1
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyT 79 (920)
+..+||.+++.+.. .+.+...+..+....|+-||++|+|||+.
T Consensus 60 rp~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 60 RPKSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CcCCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 45678888876522 22233334556667788899999999875
No 183
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.56 E-value=16 Score=41.09 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHhCCccEEEEEeccCCcCcccccCCC
Q 002455 57 SVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 57 svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
..-..-+.-++-||+.|||||.+|.-+
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L~q~ 43 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLLAQA 43 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHHHHH
Confidence 334567778999999999999998643
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=41.02 E-value=25 Score=43.64 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.5
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999873
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=41.00 E-value=19 Score=42.61 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.1
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999886
No 186
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.96 E-value=19 Score=44.39 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=28.6
Q ss_pred EEEEEeccCCcCccccc-----------------------CCCchhHHHHHHHHHHhcc
Q 002455 64 SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 99 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM-----------------------~GIipral~dLF~~I~~~~ 99 (920)
-.|+.||+.|+|||.+. .|--++++.++|+......
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA 527 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC
Confidence 45999999999999876 2566788889998776544
No 187
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=40.59 E-value=24 Score=44.09 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=27.0
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
-.||.- |......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 457755 444444443 799999999999999999986
No 188
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.36 E-value=15 Score=42.88 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+...+-.+.-..++-||++|+|||+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3333345555567779999999997764
No 189
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.29 E-value=19 Score=40.28 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=27.5
Q ss_pred CCccE--EEEEeccCCcCcccccC-----------------------CCchhHHHHHHHHHHhc
Q 002455 60 SGINS--SIFAYGQTSSGKTYTMT-----------------------GITECTVADIFDYIHRH 98 (920)
Q Consensus 60 ~G~Na--tIfAYGQTGSGKTyTM~-----------------------GIipral~dLF~~I~~~ 98 (920)
-|+.- .|+.||+.|+|||.+-. |--.|.+++||+.....
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 35543 58999999999998762 23346788899766543
No 190
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=40.28 E-value=19 Score=39.49 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=22.5
Q ss_pred ChHHHHHHhHHHHHHHHhC--CccEEEEEeccCCcCcccccC
Q 002455 42 STTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 42 sQeeVYe~~~~pLV~svL~--G~NatIfAYGQTGSGKTyTM~ 81 (920)
-|+++.+. ...++..... +....++-||+.|+|||+...
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 45555554 3333333222 222346779999999998764
No 191
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.11 E-value=11 Score=45.04 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=14.2
Q ss_pred EEEeccCCcCcccccC
Q 002455 66 IFAYGQTSSGKTYTMT 81 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~ 81 (920)
++|++|||||||+...
T Consensus 114 l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 114 LMACAQTGSGKTAAFL 129 (482)
T ss_pred eEEEccCCCcchHHHH
Confidence 4899999999999874
No 192
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.06 E-value=26 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.1
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466777999999999974
No 193
>PRK04195 replication factor C large subunit; Provisional
Probab=39.95 E-value=13 Score=44.33 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCc-cEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~-NatIfAYGQTGSGKTyTM 80 (920)
...++.....|. .-.++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444455555554 557888999999999876
No 194
>PRK10536 hypothetical protein; Provisional
Probab=39.64 E-value=18 Score=40.22 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=25.9
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4555555554444443332 2223 3489999999999999853
No 195
>PF05729 NACHT: NACHT domain
Probab=38.87 E-value=14 Score=35.71 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.9
Q ss_pred EEEEeccCCcCcccccCC
Q 002455 65 SIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~G 82 (920)
.++-+|..|+|||..|..
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 467899999999998743
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=38.81 E-value=37 Score=38.91 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.8
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
...|.-.|.+|+|||+|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46788899999999999743
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=14 Score=42.28 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.2
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
+-|+..|+||||||+--
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 45899999999999743
No 198
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=38.65 E-value=14 Score=42.45 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.3
Q ss_pred EEEeccCCcCcccccCCCchhHH
Q 002455 66 IFAYGQTSSGKTYTMTGITECTV 88 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~GIipral 88 (920)
++.+|+||||||+++ ++|.++
T Consensus 2 ~lv~g~tGsGKt~~~--viP~ll 22 (384)
T cd01126 2 VLVFAPTRSGKGVGF--VIPNLL 22 (384)
T ss_pred eeEecCCCCCCccEE--Eccchh
Confidence 578899999999987 355444
No 199
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=38.60 E-value=22 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred HHHHHHHhCCcc---EEEEEeccCCcCcccccC
Q 002455 52 KEIALSVVSGIN---SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 52 ~pLV~svL~G~N---atIfAYGQTGSGKTyTM~ 81 (920)
-|++...+.|.- -|||+ |+||||||.-|.
T Consensus 260 FpvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hhHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 366777787754 36665 999999998873
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.45 E-value=34 Score=39.70 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=25.2
Q ss_pred eEeCCCCChHHHHHHhHHHHHHHHhCC---ccEEEEEeccCCcCccccc
Q 002455 35 RVFWGDCSTTQVYEDGAKEIALSVVSG---INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 35 ~VF~~~asQeeVYe~~~~pLV~svL~G---~NatIfAYGQTGSGKTyTM 80 (920)
.||+- +++-+.++.- +.....| -+-.+.-.|++|+|||...
T Consensus 52 ~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 52 DFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred hccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 67774 4444444432 3333333 4566788899999999753
No 201
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=38.45 E-value=17 Score=40.13 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=15.0
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
+--|+-+|++|+|||-++
T Consensus 33 ~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp TEEEEEESSTTSSHHHHH
T ss_pred CCcEEEECCCCCchhHHH
Confidence 556788999999999775
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=38.42 E-value=29 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.2
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999876
No 203
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.06 E-value=38 Score=40.24 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=16.6
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
-..|+-+|.+|+|||+|..-
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999743
No 204
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.02 E-value=1.3e+02 Score=32.82 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 324 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 324 ~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
+++++...++..+.+... +.+......+.+.++++++++..+.++.++.....|.+...+
T Consensus 131 ~~~~~~~~lk~~~~~~~~------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSK------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHhhhcccc------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556655544322 222223333444555555555555555555555555555443
No 205
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.98 E-value=19 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHHhCCccEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3445678876 677789999999874
No 206
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.91 E-value=30 Score=40.07 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=21.1
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..|-.+|+|.+| +.+..||||||..+.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFa 62 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFA 62 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhh
Confidence 345677899998 556699999998874
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.90 E-value=13 Score=35.57 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.0
Q ss_pred EEEeccCCcCcccccCC
Q 002455 66 IFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~G 82 (920)
++-+|++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 46689999999998754
No 208
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.78 E-value=2.2e+02 Score=26.66 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC-cchHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 319 KALVKHLQKELARLESELRSPAPASS-TCDYVALLRKK------------DLQIQKMEREIRELTKQRDLAQSRVEDLLR 385 (920)
Q Consensus 319 ~~lik~Lq~Eia~Le~eL~~~~~~~s-~~~~~~~l~ek------------d~~i~kle~ei~el~~q~d~~q~r~e~l~~ 385 (920)
..-+..|+.++..|+..++......- ..++ ..|... ..+.+.+..++..|+++...++.....|.+
T Consensus 18 ~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~-~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~ 96 (100)
T PF01486_consen 18 QQEIAKLRKENESLQKELRHLMGEDLESLSL-KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQ 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccch-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888877654321 1221 112221 223344567777777777777777776766
Q ss_pred Hhc
Q 002455 386 MVG 388 (920)
Q Consensus 386 ~~~ 388 (920)
++.
T Consensus 97 ~~~ 99 (100)
T PF01486_consen 97 KIE 99 (100)
T ss_pred Hhc
Confidence 653
No 209
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=37.67 E-value=25 Score=42.24 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+..++.|.|. ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 345567789875 55569999999764
No 210
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=37.63 E-value=29 Score=43.35 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.||.. |.....+++ .|.|-||+.-|.+|||||.|.-
T Consensus 70 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 70 HVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 47744 444444444 6999999999999999999863
No 211
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.59 E-value=1.1e+02 Score=29.68 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 347 DYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 347 ~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
+....|++++..|++++.|+.-|.-..+.+..|++.|...+..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999999999999999999999888887764
No 212
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.27 E-value=1.1e+02 Score=38.77 Aligned_cols=73 Identities=12% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 320 ALVKHLQKELARLESELRSPAPASS------------TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 320 ~lik~Lq~Eia~Le~eL~~~~~~~s------------~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
..+..|..+|++|+.+|...+.... .......+.+...+.+.|+..+.+|.++++.-.+.++.|.+++
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899998888876554311 0112223444444455555666666666665556666666666
Q ss_pred ccCCC
Q 002455 388 GCDQD 392 (920)
Q Consensus 388 ~~~~~ 392 (920)
.+.+.
T Consensus 498 ~eE~~ 502 (697)
T PF09726_consen 498 AEERR 502 (697)
T ss_pred HHHHH
Confidence 66653
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=37.11 E-value=30 Score=43.37 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=14.4
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999876
No 214
>PRK11637 AmiB activator; Provisional
Probab=36.98 E-value=1.6e+02 Score=34.68 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 358 QIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 358 ~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
+|..++++|.+++.+++.++.++.++.+.+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 215
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=36.98 E-value=10 Score=43.95 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=13.0
Q ss_pred EEEEeccCCcCcccccCC
Q 002455 65 SIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~G 82 (920)
-++..|.||||||.+|..
T Consensus 17 ~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRH 34 (386)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 367889999999986644
No 216
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.90 E-value=1.8e+02 Score=33.14 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 352 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 352 l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
+.+...++..++.+++++..++..++.++.++.+...
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555566666665555544
No 217
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=36.64 E-value=19 Score=43.22 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=32.9
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..|.||.+++.+..-.++.+.+. .+ ...+..|+-+|.+||||++.-
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~-----~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQAR-----VV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHH-----HH-hCcCCCEEEECCCCccHHHHH
Confidence 45889999997765555554422 21 256778999999999998753
No 218
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=36.58 E-value=20 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.++..++.|.|+. +..+||+|||.+.
T Consensus 20 ~~i~~il~g~dvl--v~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDVL--VVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCEE--EEcCCCccHhHHH
Confidence 3445677899864 4459999999875
No 219
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=36.50 E-value=32 Score=43.00 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 47744 444555555 599999999999999999986
No 220
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=36.42 E-value=34 Score=37.35 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
...++..+..|.+. +-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 33445555566655 55899999999865
No 221
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=36.32 E-value=26 Score=44.02 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
-..+++.+| |-|+.|.+ +||+|||+.-
T Consensus 67 Q~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 456788899 99998877 9999999863
No 222
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=36.21 E-value=17 Score=42.48 Aligned_cols=38 Identities=21% Similarity=0.464 Sum_probs=27.1
Q ss_pred EEEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEeeeeeeec
Q 002455 64 SSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYN 114 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~vS~lEIYn 114 (920)
+.|+-||.+||||||++ +.+|+... .-.|.+.++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------r~~l~~~n-----~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------RQLLRKLN-----LENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------HHHHhhcC-----CcceeeehHHhcc
Confidence 34699999999999984 45555442 2247888888874
No 223
>PRK04406 hypothetical protein; Provisional
Probab=36.20 E-value=3.4e+02 Score=24.74 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 323 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 323 k~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
..+...|..|+..+. -.+.-|+.|.+.+-+.+++++.++.++..|.+.+..
T Consensus 7 ~~le~Ri~~LE~~lA----------------fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLA----------------FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666777776652 223334445555555555555555555555444433
No 224
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=36.09 E-value=16 Score=40.77 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.0
Q ss_pred CCccEEEEEeccCCcCcccc
Q 002455 60 SGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyT 79 (920)
.|++-+|+..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 38899999999999999874
No 225
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=35.98 E-value=31 Score=43.25 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
-.||.- |......++ .|.|-||+.-|.+|||||.|.-
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 347754 444444444 6899999999999999999864
No 226
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=35.77 E-value=19 Score=40.45 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357779999999999875
No 227
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.62 E-value=24 Score=42.21 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=26.7
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCc-cEEEEEeccCCcCccccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~-NatIfAYGQTGSGKTyTM 80 (920)
.-+||.|.+. +.+ ...+-..+-.|. ...++-||+.|+|||++.
T Consensus 10 P~~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 10 PKTFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCCHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4467777764 333 223333333453 345888999999999876
No 228
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=35.62 E-value=17 Score=36.38 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.6
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
+..+-||++|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 455678999999999873
No 229
>PRK10865 protein disaggregation chaperone; Provisional
Probab=35.60 E-value=25 Score=45.06 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=27.1
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCcc------EEEEEeccCCcCccccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGIN------SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~N------atIfAYGQTGSGKTyTM 80 (920)
..-+.+|++.+..-..|... + ..+..|.. +.++-+|++|+|||++.
T Consensus 564 ~~l~~~viGQ~~ai~~l~~~----i-~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 564 QELHHRVIGQNEAVEAVSNA----I-RRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HHhCCeEeCCHHHHHHHHHH----H-HHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34566777654333333322 2 22333332 57788899999999975
No 230
>PRK04328 hypothetical protein; Provisional
Probab=35.40 E-value=26 Score=37.97 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.4
Q ss_pred HHHHHHHhCC---ccEEEEEeccCCcCcccc
Q 002455 52 KEIALSVVSG---INSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 52 ~pLV~svL~G---~NatIfAYGQTGSGKTyT 79 (920)
-+-+|.++.| ..++++-+|++|+|||.-
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3457788876 588899999999999753
No 231
>PHA02244 ATPase-like protein
Probab=35.33 E-value=35 Score=39.83 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 52 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 52 ~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
..+..-+-.|.+. +-+|+||+|||+...
T Consensus 110 ~ri~r~l~~~~PV--LL~GppGtGKTtLA~ 137 (383)
T PHA02244 110 ADIAKIVNANIPV--FLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHHH
Confidence 3444444456665 458999999998753
No 232
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=35.10 E-value=15 Score=39.57 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=16.7
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
...++-||..|+|||+...+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999997654
No 233
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.01 E-value=94 Score=33.70 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 349 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 384 (920)
Q Consensus 349 ~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~ 384 (920)
.+.+++++.+|..|.+-++...++||.|+.+++.|+
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888999999999999998877
No 234
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.98 E-value=23 Score=36.73 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHhCCc---cEEEEEeccCCcCccccc
Q 002455 56 LSVVSGI---NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 56 ~svL~G~---NatIfAYGQTGSGKTyTM 80 (920)
|.++.|- ...+.-||++|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455443 678899999999998765
No 235
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=34.96 E-value=1.5e+02 Score=35.26 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=48.8
Q ss_pred ceeeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 309 KAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 309 ~p~vN~~~s~~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
+|++......++-+.+|+.+|..|..-+ .++-.+...+|++|.+++.|-+..|..++-++++|.+.+.
T Consensus 558 k~k~e~~~~~k~s~delr~qi~el~~iv------------e~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 558 KAKVETDDVKKNSLDELRAQIIELLCIV------------EALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 3444444444566778888887776433 3344455678999999999999999999999998887653
No 236
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=34.89 E-value=23 Score=41.86 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667889998755 459999999764
No 237
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=34.88 E-value=37 Score=37.87 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+..+.+.+.+|-++ +.=.+||+|||.+..
T Consensus 17 m~~v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00489 17 MEELKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 33345555677654 555699999998763
No 238
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=34.88 E-value=37 Score=37.87 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
+..+.+.+.+|-++ +.=.+||+|||.+..
T Consensus 17 m~~v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00488 17 MEELKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 33345555677654 555699999998763
No 239
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=34.80 E-value=28 Score=42.32 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=24.8
Q ss_pred EEEEeccCCcCcccccC------------CCchhHHHHHHHHHHh
Q 002455 65 SIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHR 97 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~------------GIipral~dLF~~I~~ 97 (920)
.||..|+|.|||||--. |-+-....++|+...+
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 38999999999999862 4444456678887764
No 240
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=34.78 E-value=17 Score=35.56 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.6
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998763
No 241
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=34.59 E-value=35 Score=42.65 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
-.||.- |......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 347754 444444444 699999999999999999986
No 242
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=34.29 E-value=60 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred EEeccCCcCccccc------CC-----------CchhHHHHHHHHHHhcc
Q 002455 67 FAYGQTSSGKTYTM------TG-----------ITECTVADIFDYIHRHE 99 (920)
Q Consensus 67 fAYGQTGSGKTyTM------~G-----------Iipral~dLF~~I~~~~ 99 (920)
..+|++|+|||.|+ +| +-...+..||.-+....
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~G 85 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSG 85 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcC
Confidence 35999999999999 23 44567888888777654
No 243
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=34.25 E-value=16 Score=41.62 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.7
Q ss_pred EEEeccCCcCcccccC
Q 002455 66 IFAYGQTSSGKTYTMT 81 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~ 81 (920)
...||+|||||++-+.
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4669999999999883
No 244
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=34.12 E-value=30 Score=45.52 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
=..+|..++.|.++.+.+ +||+|||.+-
T Consensus 465 Q~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 465 QREIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 345667789999976666 9999999874
No 245
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=34.04 E-value=39 Score=42.29 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
-.||.. |......++ .|.|-||+.-|.+|||||.|.-
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 347754 444444444 6899999999999999999863
No 246
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=33.95 E-value=44 Score=35.54 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHhC-CccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVVS-GINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL~-G~NatIfAYGQTGSGKTyTM 80 (920)
..+|..++..+...+-. +..-.|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555555554443333 44556666799999999875
No 247
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=33.83 E-value=26 Score=43.03 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.3
Q ss_pred HHHHHhCCccEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
++..++.|.++.|. ++||+|||.+.
T Consensus 33 ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 34456789887555 69999999753
No 248
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.80 E-value=18 Score=42.64 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.6
Q ss_pred EEEEeccCCcCcccccCCC
Q 002455 65 SIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GI 83 (920)
.|+-.|+||+|||+|+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666799999999998654
No 249
>PRK06696 uridine kinase; Validated
Probab=33.78 E-value=41 Score=35.64 Aligned_cols=35 Identities=26% Similarity=0.106 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 45 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 45 eVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
++.+.++..++.. -.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHH
Confidence 4444544444332 2455566777899999999864
No 250
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=33.67 E-value=38 Score=42.42 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
-.||.. |......++ .|.|-||+.-|.+|||||.|.-
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 347754 544454544 7999999999999999999863
No 251
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.63 E-value=20 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.6
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
-.|+-+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999864
No 252
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=33.59 E-value=26 Score=42.78 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..+++|.|. ++.++||||||.+.
T Consensus 40 ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 3456899985 55679999999774
No 253
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=33.55 E-value=27 Score=39.93 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+.+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34456788777888899999999874
No 254
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=33.51 E-value=38 Score=42.53 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=27.7
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
-.||.- |......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 447754 555554544 699999999999999999985
No 255
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.14 E-value=31 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=16.4
Q ss_pred EEEEeccCCcCccccc-------CCCchh
Q 002455 65 SIFAYGQTSSGKTYTM-------TGITEC 86 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM-------~GIipr 86 (920)
..+-+|+||||||.-+ ||-.|+
T Consensus 27 i~lI~G~nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 27 IFLIVGPNGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHcCCCCC
Confidence 3446799999998655 787774
No 256
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=32.95 E-value=22 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred CCccEEEEEeccCCcCccccc
Q 002455 60 SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM 80 (920)
.|+.-.|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999998764
No 257
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=45 Score=37.92 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=28.7
Q ss_pred EEEEeccCCcCccccc-----------------------CCCchhHHHHHHHHHHhccc
Q 002455 65 SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHEE 100 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM-----------------------~GIipral~dLF~~I~~~~e 100 (920)
.|+-||..|+|||.-- .|--|+.+++||.....+..
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 4889999999998643 26668999999998876653
No 258
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.83 E-value=31 Score=36.26 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHhCC---ccEEEEEeccCCcCccccc
Q 002455 52 KEIALSVVSG---INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 52 ~pLV~svL~G---~NatIfAYGQTGSGKTyTM 80 (920)
-+-+|.++.| ....+.-+|++|||||.-+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456777875 5667889999999999765
No 259
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=32.79 E-value=24 Score=42.62 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=31.1
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+.||.+++.+..-..+.+.+ + . +...+..|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-~----~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-R----K-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-H----H-HhCCCCCEEEECCCCccHHHHH
Confidence 4678899888664444444442 1 1 1335777999999999998754
No 260
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=32.74 E-value=24 Score=44.60 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.3
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 446778899999999887
No 261
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=32.69 E-value=34 Score=43.39 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=31.3
Q ss_pred HHHHH-hHHHHHHHHhCCccEEEEEeccCCcCcccccCCCchhH
Q 002455 45 QVYED-GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECT 87 (920)
Q Consensus 45 eVYe~-~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipra 87 (920)
.-|+. .+..+++++-+|.+-.+++. .||+|||||-+-|+.+.
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~rL 209 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDRL 209 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHHH
Confidence 34544 56778889999999965554 69999999987655543
No 262
>PRK05580 primosome assembly protein PriA; Validated
Probab=32.65 E-value=16 Score=45.54 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=23.0
Q ss_pred eCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 37 FWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 37 F~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+.....|+++++.+... . ++ ..++.+|+||||||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHH
Confidence 33444566555553321 1 33 34889999999999775
No 263
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.64 E-value=19 Score=43.27 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.0
Q ss_pred EEEEEeccCCcCcccccCC
Q 002455 64 SSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~G 82 (920)
..|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4677889999999999854
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.61 E-value=20 Score=36.12 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.0
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998863
No 265
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.59 E-value=43 Score=42.46 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.7
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467888999999999984
No 266
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.51 E-value=1.7e+02 Score=34.55 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcch---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 322 VKHLQKELARLESELRSPAPASSTCD---YVALLRKKDLQ-IQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 322 ik~Lq~Eia~Le~eL~~~~~~~s~~~---~~~~l~ekd~~-i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
-+.+.+||++|+..|....+..+..+ +.....+|..+ ..-|+++|.+|++.+-.+..++++|.+....
T Consensus 116 ~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 116 EEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 34577888888877754323222111 12222222222 2347899999999999999999988855443
No 267
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=32.31 E-value=39 Score=42.42 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=27.3
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.||.- |......++ .|.|-||+.-|.+|||||.+.-
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 68 HIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 47744 444444444 7999999999999999999863
No 268
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=32.26 E-value=21 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.5
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 269
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.24 E-value=2.4e+02 Score=28.81 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHHHHHHhccC
Q 002455 239 LTLSTVIRKLSKG 251 (920)
Q Consensus 239 ~aLg~VI~aLs~~ 251 (920)
.++.+++..|+..
T Consensus 33 ~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 33 TAVQKALDSLVEE 45 (169)
T ss_pred HHHHHHHHHHHhC
Confidence 4556667777653
No 270
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=32 Score=41.16 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCccccc---CCCchh
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTM---TGITEC 86 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM---~GIipr 86 (920)
++..+.=+..|.+. ++.||+.|||||... .||+|-
T Consensus 187 AKrAleiAAAGgHn-Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 187 AKRALEIAAAGGHN-LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HHHHHHHHHhcCCc-EEEecCCCCchHHhhhhhcccCCC
Confidence 44444333334443 578999999999876 587764
No 271
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=32.19 E-value=32 Score=36.53 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCc---cEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~---NatIfAYGQTGSGKTyTM 80 (920)
+-+-+|.++.|- .++++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345567777642 677888899999998765
No 272
>PF13173 AAA_14: AAA domain
Probab=31.99 E-value=21 Score=34.41 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=14.7
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999874
No 273
>PHA02653 RNA helicase NPH-II; Provisional
Probab=31.68 E-value=38 Score=42.35 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=18.4
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyT 79 (920)
.++..+++|.+ |+..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 34555567765 48889999999965
No 274
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=31.67 E-value=34 Score=42.63 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 38 WGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 38 ~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+...|+.+...+.. ..-.+...-++..|+||||||.+.
T Consensus 261 ~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 355556666555333 333455556899999999999875
No 275
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.64 E-value=2.7e+02 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 348 YVALLRKKDLQIQKMEREIRELTKQRDLAQS 378 (920)
Q Consensus 348 ~~~~l~ekd~~i~kle~ei~el~~q~d~~q~ 378 (920)
+...|++.+.+.+.|+.+|..|+++.+.+++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666666666666666655543
No 276
>PRK07261 topology modulation protein; Provisional
Probab=31.11 E-value=22 Score=36.27 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.6
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998754
No 277
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=31.06 E-value=25 Score=34.69 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=22.4
Q ss_pred hHHHHHHHHhCCccEEEEEeccCCcCcccccCCC
Q 002455 50 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 50 ~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
.++.+...+-.| ..|+-+|.-|||||+-..|+
T Consensus 4 la~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l 35 (123)
T PF02367_consen 4 LAKKLAQILKPG--DVILLSGDLGAGKTTFVRGL 35 (123)
T ss_dssp HHHHHHHHHSS---EEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCC--CEEEEECCCCCCHHHHHHHH
Confidence 455555444333 56999999999999987664
No 278
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=30.91 E-value=20 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=16.9
Q ss_pred EEEEEeccCCcCcccccCCCchh
Q 002455 64 SSIFAYGQTSSGKTYTMTGITEC 86 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GIipr 86 (920)
-..+-.|+.|+|||||+.=|+.+
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHH
Confidence 34566799999999998644433
No 279
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=30.80 E-value=31 Score=43.46 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.-+||.+++ |+.+-.. ...+...+-.|.-..++-||++|+|||++...
T Consensus 24 P~tldd~vG----Qe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 24 PRTLEEFVG----QDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CCcHHHhcC----cHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 345666654 3333322 12232223345555788899999999988743
No 280
>PRK13767 ATP-dependent helicase; Provisional
Probab=30.75 E-value=30 Score=44.48 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=17.8
Q ss_pred HHHhCCccEEEEEeccCCcCccccc
Q 002455 56 LSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 56 ~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..+++|.|+.|.| +||||||.+.
T Consensus 42 ~~il~g~nvli~A--PTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLISS--PTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEEEC--CCCCcHHHHH
Confidence 3457899876655 9999999874
No 281
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=30.72 E-value=33 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=18.1
Q ss_pred EEEEEeccCCcCcccccCCCchhHH
Q 002455 64 SSIFAYGQTSSGKTYTMTGITECTV 88 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GIipral 88 (920)
.-++.+|+||||||.++ ++|.++
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~ll 67 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNLL 67 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHHH
Confidence 56889999999999987 455443
No 282
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=30.68 E-value=29 Score=39.72 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
...++..+++..-+-|+-.|.+|+|||..+.
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 4456677777767778899999999998874
No 283
>CHL00181 cbbX CbbX; Provisional
Probab=30.56 E-value=47 Score=37.03 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.7
Q ss_pred EEEeccCCcCcccccC
Q 002455 66 IFAYGQTSSGKTYTMT 81 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~ 81 (920)
|+-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999998753
No 284
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.37 E-value=2.7e+02 Score=30.37 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=55.5
Q ss_pred cccceEeccCCCcchHHHHHHHHHHHHHhhccccceeecccc-----CHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHH
Q 002455 275 ARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVM-----SDKALVKHLQKELARLESELRSPAPASSTCDYV 349 (920)
Q Consensus 275 skT~mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~-----s~~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~ 349 (920)
....|..-|.+ ..+++.++.|. ..-.|...-..-+++ +..+.++.++++..+|.+.|.....
T Consensus 94 ~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~-------- 160 (262)
T PF14257_consen 94 RSASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT-------- 160 (262)
T ss_pred ceEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 34445555544 47888887777 122333332222222 2344566777777777776653321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 350 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 350 ~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
-..+.++|+++.+.+.++|.++.++..|.+.+.=
T Consensus 161 ------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 161 ------VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 1235567777788888888887777777766543
No 285
>PRK04296 thymidine kinase; Provisional
Probab=30.37 E-value=19 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.3
Q ss_pred EEEEeccCCcCcccccCCCchh
Q 002455 65 SIFAYGQTSSGKTYTMTGITEC 86 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIipr 86 (920)
.++-+|+.|+|||..+.|++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
Confidence 5678999999999887765443
No 286
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.27 E-value=59 Score=36.02 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.0
Q ss_pred EEEEEeccCCcCcccccCC
Q 002455 64 SSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~G 82 (920)
.+|...|++|+|||.|..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4566669999999999743
No 287
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=30.05 E-value=30 Score=42.18 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=30.9
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..|.||.+++.+..-+++.+. +.. +...+..|+-+|.+||||++.-
T Consensus 214 ~~~~f~~iiG~S~~m~~~~~~-----i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 214 TRYVLGDLLGQSPQMEQVRQT-----ILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred cccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 347888888866433333333 222 3456889999999999997653
No 288
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=29.95 E-value=24 Score=35.75 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 289
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=29.86 E-value=20 Score=35.59 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.1
Q ss_pred EEEeccCCcCcccc
Q 002455 66 IFAYGQTSSGKTYT 79 (920)
Q Consensus 66 IfAYGQTGSGKTyT 79 (920)
|+-.|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 290
>PRK02119 hypothetical protein; Provisional
Probab=29.85 E-value=4.2e+02 Score=23.94 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 323 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 323 k~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
..+...|..|+..+. -.+.-|..|.+.+-+.+++++.++.++..|.+.+.+
T Consensus 5 ~~~e~Ri~~LE~rla----------------~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIA----------------FQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666552 122334444444444444455555555544444433
No 291
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=29.75 E-value=33 Score=39.28 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
...++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 445666666654 678888999999998763
No 292
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.52 E-value=21 Score=40.32 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.0
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
-+|+-.|.||||||+.|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346778999999999984
No 293
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.42 E-value=29 Score=42.04 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=31.1
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..|.||.+++.+..-+.+.+. +.. +...+..|+-+|.+||||++..
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 458899988865433333333 222 3456789999999999997653
No 294
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=29.31 E-value=38 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=16.7
Q ss_pred HHhCCccEEEEEeccCCcCccccc
Q 002455 57 SVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 57 svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.++.+.. .|+..|+||||||.-+
T Consensus 84 ~ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 84 EAIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHhCC-eEEEECCCCCCHHHHH
Confidence 3445544 5667799999999976
No 295
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=29.22 E-value=24 Score=34.31 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.2
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998754
No 296
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=29.19 E-value=34 Score=41.54 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=30.4
Q ss_pred CceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCc
Q 002455 29 PIHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGK 76 (920)
Q Consensus 29 ksFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGK 76 (920)
..|+||.+.+.+..-.++-+ ++ .-..+.+++|+-+|.||+||
T Consensus 240 a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccH
Confidence 57899999987643322222 22 23478999999999999999
No 297
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=29.14 E-value=33 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHhCCccEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+..+++|.|+.+.| +||||||.+.
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 345678999976666 9999999864
No 298
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.13 E-value=4.3e+02 Score=23.85 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 354 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 354 ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
+...++..+++++.++..+++.+...++.|...+
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555666666666666666555555443
No 299
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.12 E-value=32 Score=36.22 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHhCC---ccEEEEEeccCCcCcccc
Q 002455 54 IALSVVSG---INSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 54 LV~svL~G---~NatIfAYGQTGSGKTyT 79 (920)
-+|.++.| .+++++.+|++|||||.-
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 35666643 467899999999999864
No 300
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=29.11 E-value=23 Score=39.30 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=14.0
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999875
No 301
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.10 E-value=23 Score=39.50 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.5
Q ss_pred EeccCCcCccccc
Q 002455 68 AYGQTSSGKTYTM 80 (920)
Q Consensus 68 AYGQTGSGKTyTM 80 (920)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 3599999999997
No 302
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.05 E-value=4.2e+02 Score=24.13 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 321 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
.|.-||-||..|+.+-.+. ...........+.|+.+..+|+.+-..-|.|+..|+-++
T Consensus 19 TI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 19 TITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556777777777654221 111222234456677778888888777778777776544
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=28.84 E-value=32 Score=42.85 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=29.4
Q ss_pred eecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccc
Q 002455 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 31 FtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyT 79 (920)
+.|+.+++.+..-..+.+.+.. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~------~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM------VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH------HhCCCCCEEEECCCCcCHHHH
Confidence 5677788766544555544222 235677899999999999874
No 304
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=28.77 E-value=73 Score=41.53 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=10.3
Q ss_pred cCCcCcccccCC
Q 002455 71 QTSSGKTYTMTG 82 (920)
Q Consensus 71 QTGSGKTyTM~G 82 (920)
.|||||||||.+
T Consensus 67 ~TGtGKT~~~~~ 78 (986)
T PRK15483 67 ETGTGKTYVYTR 78 (986)
T ss_pred CCCCCHHHHHHH
Confidence 799999998754
No 305
>PHA02624 large T antigen; Provisional
Probab=28.75 E-value=44 Score=41.39 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHHhCCccE--EEEEeccCCcCcccccCC
Q 002455 53 EIALSVVSGINS--SIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 53 pLV~svL~G~Na--tIfAYGQTGSGKTyTM~G 82 (920)
.++..++.|.-. ||+-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 345566677665 899999999999986544
No 306
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=28.66 E-value=36 Score=40.41 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=26.7
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCCc-cEEEEEeccCCcCcccccC
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G~-NatIfAYGQTGSGKTyTM~ 81 (920)
+||.|++.+ .+ +..+...+-.|. .-+++-||+.|+|||.+..
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 677777643 22 333444444564 3457779999999998864
No 307
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.46 E-value=26 Score=38.26 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.1
Q ss_pred HhCCccEE------EEEeccCCcCccccc
Q 002455 58 VVSGINSS------IFAYGQTSSGKTYTM 80 (920)
Q Consensus 58 vL~G~Nat------IfAYGQTGSGKTyTM 80 (920)
||+|+|.+ |.-.|++|||||+-+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45666654 355799999999876
No 308
>PRK08118 topology modulation protein; Reviewed
Probab=28.46 E-value=26 Score=35.68 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.1
Q ss_pred EEEeccCCcCcccc
Q 002455 66 IFAYGQTSSGKTYT 79 (920)
Q Consensus 66 IfAYGQTGSGKTyT 79 (920)
|+-.|+.|||||+-
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999953
No 309
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=28.39 E-value=31 Score=34.67 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.6
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999876
No 310
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.28 E-value=1.9e+02 Score=30.85 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 318 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELT 370 (920)
Q Consensus 318 ~~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~ 370 (920)
.+.++.....||..|+..|+..... ..+....+++++.++.+.+.++..|+
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~--~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQ--ERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777778888888877654322 12234445566666665555554443
No 311
>PTZ00110 helicase; Provisional
Probab=28.26 E-value=37 Score=41.20 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+..++.|.|.. +.++||||||.+.
T Consensus 161 ip~~l~G~dvI--~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDMI--GIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCEE--EEeCCCChHHHHH
Confidence 44567898764 5569999999864
No 312
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.23 E-value=25 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=31.4
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyT 79 (920)
.-+||.|++ |+.+... .+++=.-+-.|.-.+.+-||+.|+|||.-
T Consensus 20 P~~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 20 PKSLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CCCHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 345666654 5666655 45555555567778888999999999863
No 313
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.05 E-value=35 Score=38.42 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred HHhCCccEEEEEeccCCcCccccc
Q 002455 57 SVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 57 svL~G~NatIfAYGQTGSGKTyTM 80 (920)
++-+||.--|++.|.||.|||.-|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 556899999999999999999765
No 314
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=27.95 E-value=28 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.5
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 315
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=27.94 E-value=48 Score=34.85 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCc---cEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~---NatIfAYGQTGSGKTyTM~ 81 (920)
+-+-+|.++.|- ...+.-+|.+|+|||....
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345577788543 5678999999999998764
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=27.67 E-value=66 Score=38.21 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.9
Q ss_pred cEEEEEeccCCcCcccccC
Q 002455 63 NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~ 81 (920)
-..|+..|.+|+|||+|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3568888999999999964
No 317
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.61 E-value=20 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.5
Q ss_pred cEEEEEeccCCcCcccccCCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~GI 83 (920)
|.-++..|.||||||++|.-+
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l 450 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQEL 450 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHH
Confidence 444677899999999998643
No 318
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=27.48 E-value=60 Score=34.93 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=23.0
Q ss_pred HHHHHHHHhC--CccEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVS--GINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~--G~NatIfAYGQTGSGKTyTM 80 (920)
+..+.+.+.+ .-...|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 67778999999999999764
No 319
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=27.41 E-value=36 Score=41.01 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHhCCccE------EEEEeccCCcCcccccC
Q 002455 55 ALSVVSGINS------SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 55 V~svL~G~Na------tIfAYGQTGSGKTyTM~ 81 (920)
+..+++|++. .|+-+|++|||||+.|.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3456677554 46788999999999875
No 320
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.35 E-value=35 Score=41.11 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=18.0
Q ss_pred HHhCCccE-EEEEeccCCcCccccc
Q 002455 57 SVVSGINS-SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 57 svL~G~Na-tIfAYGQTGSGKTyTM 80 (920)
.+-.|.-. .++-||+.|+|||.+.
T Consensus 28 a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 28 AFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHcCCCCceEEEECCCCccHHHHH
Confidence 33455444 7899999999999865
No 321
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.33 E-value=4.5e+02 Score=27.61 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 319 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 384 (920)
Q Consensus 319 ~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~ 384 (920)
...+..|+.+++.|+.+++ +....++++...++.+..|+.-|+-+...++.++..|.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~---------~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIK---------DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766653 33445556666666666665555555544444444433
No 322
>PRK08233 hypothetical protein; Provisional
Probab=27.28 E-value=28 Score=34.79 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=12.5
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999865
No 323
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.27 E-value=57 Score=38.75 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.1
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999974
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.25 E-value=2e+02 Score=33.57 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.0
Q ss_pred HhCCccEEEEEeccCCcCccccc
Q 002455 58 VVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 58 vL~G~NatIfAYGQTGSGKTyTM 80 (920)
+-.|+.-+|+..|+.|+|||.-+
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHH
Confidence 34899999999999999998753
No 325
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=27.22 E-value=45 Score=42.64 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 51 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 51 ~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
...+++.+-++- .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 455666665544 3677899999999887
No 326
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=27.21 E-value=53 Score=41.00 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCcccccC
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.||.. +......++ .|.|-||+.-|.+|||||.|+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 47743 444444444 5899999999999999999974
No 327
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=27.17 E-value=27 Score=35.17 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.2
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.|+-.|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998864
No 328
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.12 E-value=1.9e+02 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 354 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 386 (920)
Q Consensus 354 ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~ 386 (920)
..+.+|+++++++++.+.+.+.++.+.+++.+.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566777777777777777777777766653
No 329
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.95 E-value=4.6e+02 Score=24.40 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 360 QKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 360 ~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
..|+.+..+|+.+...-+.|+..|+-++.
T Consensus 49 ~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 49 EELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778888888888888888888876654
No 330
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=26.90 E-value=67 Score=40.28 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=23.1
Q ss_pred HHHHHh--CCccEEEEEeccCCcCcccccCCC
Q 002455 54 IALSVV--SGINSSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 54 LV~svL--~G~NatIfAYGQTGSGKTyTM~GI 83 (920)
.+..++ +|-.+|+.--|..|||||.|..++
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~V 442 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEV 442 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehHHHH
Confidence 344444 477779999999999999998664
No 331
>PRK01172 ski2-like helicase; Provisional
Probab=26.90 E-value=41 Score=41.65 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=16.5
Q ss_pred HHhCCccEEEEEeccCCcCccccc
Q 002455 57 SVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 57 svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.+.+|-| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3467877 566679999999763
No 332
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.88 E-value=2.3e+02 Score=28.61 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCCCC--CcchHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 326 QKELARLESELRSPAPAS--STCDYV---------ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 326 q~Eia~Le~eL~~~~~~~--s~~~~~---------~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
++||-+|++.-+.....+ .+|-.. ..-.+...++++|.+++.++..++|.+..+.+.|..-.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467777777655443321 112221 11112233566677777777777777777777766543
No 333
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=26.86 E-value=56 Score=36.56 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHhCC-ccEEEEEeccCCcCccccc
Q 002455 57 SVVSG-INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 57 svL~G-~NatIfAYGQTGSGKTyTM 80 (920)
.+-.| +.-.++-||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33345 4457889999999999775
No 334
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.70 E-value=29 Score=30.04 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.3
Q ss_pred EEEeccCCcCcccccCC
Q 002455 66 IFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~G 82 (920)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46678889999998654
No 335
>PRK00295 hypothetical protein; Provisional
Probab=26.68 E-value=4.6e+02 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 356 DLQIQKMEREIRELTKQRDLAQSRVEDL 383 (920)
Q Consensus 356 d~~i~kle~ei~el~~q~d~~q~r~e~l 383 (920)
+..+-+..++|..|+++...+..++.++
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445555555555554444443
No 336
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=26.41 E-value=76 Score=32.50 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=31.5
Q ss_pred ehhhhhHHHHhhcCCccccCCccccHHHHHHHHHHHHHHHHHHHHhhC
Q 002455 785 LKRLSFLKESFSQGNMAMQDGRVLSLASSERALRRERETLSKLMRRRL 832 (920)
Q Consensus 785 lRRL~~l~~~~~~~~~~~~~~~~~~~~ss~k~l~~er~~l~k~~~~~l 832 (920)
-||.-||++....--.| +-.++|-++.|+.+|||=+|.....|
T Consensus 84 ~~rV~~Lqd~~~~hksa-----~~aLas~L~~Lr~q~e~e~keaa~qL 126 (152)
T PF15186_consen 84 ARRVQWLQDQAEEHKSA-----AWALASELKRLREQREMERKEAAFQL 126 (152)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999877542211 34689999999999998777665543
No 337
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=26.39 E-value=29 Score=34.80 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.0
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
++-+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 338
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.38 E-value=22 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.6
Q ss_pred ccEEEEEeccCCcCcccccCCCc
Q 002455 62 INSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 62 ~NatIfAYGQTGSGKTyTM~GIi 84 (920)
-|+-.+.+|+||||||++|..++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li 496 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLL 496 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHH
Confidence 46777888999999999986543
No 339
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.30 E-value=29 Score=40.76 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEEEeccCCcCcccccCCC
Q 002455 64 SSIFAYGQTSSGKTYTMTGI 83 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GI 83 (920)
-.|+-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35778899999999998654
No 340
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.27 E-value=28 Score=41.15 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.1
Q ss_pred EEEEEeccCCcCcccccCC
Q 002455 64 SSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~G 82 (920)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4678889999999999753
No 341
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=26.15 E-value=56 Score=41.59 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 44 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 44 eeVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
-.||.. +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 347744 444444544 699999999999999999985
No 342
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.14 E-value=42 Score=39.03 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=24.8
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCcc-EEEEEeccCCcCccccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~N-atIfAYGQTGSGKTyTM 80 (920)
.-+||.|++ |+.+- +.|...+-.|.- -+++-||+.|+|||.+.
T Consensus 12 P~~~~eiiG----q~~~~----~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 12 PKKFADITA----QEHIT----RTIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred CCcHhhccC----hHHHH----HHHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 345677765 23332 223333334533 34777999999998764
No 343
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=25.97 E-value=48 Score=40.94 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=24.8
Q ss_pred eCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 37 FWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 37 F~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
|.+...|+.+...+... .-.....-++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 34444566655554433 22334445788999999999865
No 344
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=25.94 E-value=28 Score=35.94 Aligned_cols=15 Identities=40% Similarity=0.328 Sum_probs=12.4
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999863
No 345
>PRK14531 adenylate kinase; Provisional
Probab=25.87 E-value=31 Score=35.32 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.5
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
-|+.+|+.|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 346
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.82 E-value=30 Score=40.90 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=16.5
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
+..|...|++|+|||+|+.-
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34678889999999999853
No 347
>PRK00736 hypothetical protein; Provisional
Probab=25.81 E-value=3.9e+02 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 359 IQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 359 i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
|+.|.+.+-+-.++++.++.++..|...+
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 348
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=25.79 E-value=77 Score=35.91 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.4
Q ss_pred ccEEEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEe
Q 002455 62 INSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKF 107 (920)
Q Consensus 62 ~NatIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~v 107 (920)
.-+||+..|-.|||||.- ++.|..++.......|.|.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF--------~QrL~~hl~~~~~ppYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTF--------MQRLNSHLHAKKTPPYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhH--------HHHHHHHHhhccCCCeEEeC
Confidence 356999999999999975 45566666666655665543
No 349
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.65 E-value=62 Score=41.13 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.9
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
.++++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999986
No 350
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.65 E-value=2.4e+02 Score=32.68 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 321 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 384 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~ 384 (920)
+....++|+.++.+++.+.+.. ..+......+.+..++.||.++..|++..|.+....++-+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt--~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRT--EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556666666666655433221 1122233344455566677777777777777776666533
No 351
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=25.52 E-value=28 Score=35.80 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=12.6
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999987
No 352
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.51 E-value=1.1e+02 Score=34.02 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=43.6
Q ss_pred eEeccCCCcchHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCcchH--------HH
Q 002455 279 IICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDY--------VA 350 (920)
Q Consensus 279 mIatISPs~~~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~--------~~ 350 (920)
.||.+.|.. .+.+-+..|+.--. ....-+..|+.+|+.-+.+|..+.......+. ..
T Consensus 168 ~L~~vYP~~-ga~eki~~Lr~~y~--------------~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~ 232 (259)
T PF08657_consen 168 KLCNVYPLP-GAREKIAALRQRYN--------------QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSE 232 (259)
T ss_pred HHHHhCCCh-HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 457777765 45555555553211 12234677888888777777654332211100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 351 LLRKKDLQIQKMEREIRELTKQRDLA 376 (920)
Q Consensus 351 ~l~ekd~~i~kle~ei~el~~q~d~~ 376 (920)
....-+..|++.+++|++|+.++..+
T Consensus 233 ~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 233 DSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11123455666677777777666544
No 353
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.47 E-value=48 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.1
Q ss_pred EEEEEeccCCcCccccc-------CCCchh
Q 002455 64 SSIFAYGQTSSGKTYTM-------TGITEC 86 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM-------~GIipr 86 (920)
+.+.-+|+||||||..+ +|-+|+
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLyg~~~r 60 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALYHETPR 60 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 34556799999998865 676665
No 354
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=25.45 E-value=29 Score=42.01 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.8
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 355
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.43 E-value=3.3e+02 Score=28.46 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 354 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 354 ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
+...+++.|++++..|.++....+...+.|...|.-
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777766654
No 356
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.33 E-value=51 Score=34.39 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.6
Q ss_pred HHHHHHhC-Ccc--EEEEEeccCCcCcccccC
Q 002455 53 EIALSVVS-GIN--SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~-G~N--atIfAYGQTGSGKTyTM~ 81 (920)
+-+|.++. |+. ..+..+|++|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 45677785 443 458899999999998754
No 357
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.22 E-value=3.3e+02 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002455 358 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 389 (920)
Q Consensus 358 ~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~ 389 (920)
-|+.|.+.+-+..++++.++.++..|..++..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555544444444
No 358
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=25.06 E-value=89 Score=35.24 Aligned_cols=32 Identities=13% Similarity=0.398 Sum_probs=23.9
Q ss_pred EEEEeccCCcCccccc-----CC------CchhHHHHHHHHHH
Q 002455 65 SIFAYGQTSSGKTYTM-----TG------ITECTVADIFDYIH 96 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM-----~G------Iipral~dLF~~I~ 96 (920)
.|+.-|.+|||||..| .| +.|..+..+.+.+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 4677899999999999 34 66666666666555
No 359
>PRK06217 hypothetical protein; Validated
Probab=24.95 E-value=33 Score=35.13 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=12.3
Q ss_pred EEEeccCCcCcccc
Q 002455 66 IFAYGQTSSGKTYT 79 (920)
Q Consensus 66 IfAYGQTGSGKTyT 79 (920)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999875
No 360
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.88 E-value=36 Score=35.84 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.0
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999764
No 361
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.87 E-value=56 Score=37.15 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=19.9
Q ss_pred HHHHHhCC-ccEEEEEeccCCcCcccccC
Q 002455 54 IALSVVSG-INSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 54 LV~svL~G-~NatIfAYGQTGSGKTyTM~ 81 (920)
+...+-.| ....++-||+.|+|||++..
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 44444456 34578889999999998764
No 362
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=24.75 E-value=41 Score=41.47 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHhCCc-cEEEEEeccCCcCccccc
Q 002455 54 IALSVVSGI-NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 54 LV~svL~G~-NatIfAYGQTGSGKTyTM 80 (920)
|...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333444564 346888999999999886
No 363
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.73 E-value=1.5e+02 Score=29.76 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=44.4
Q ss_pred eehhhhhHHHHhhcCCccc--cCCccccHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhCC
Q 002455 784 ELKRLSFLKESFSQGNMAM--QDGRVLSLASSERALRRERETLSKLMRRRLSADERNKLYQKWGI 846 (920)
Q Consensus 784 ElRRL~~l~~~~~~~~~~~--~~~~~~~~~ss~k~l~~er~~l~k~~~~~l~~~ere~ly~kw~i 846 (920)
|||||+-||+.|...+... .+..-..-....+.|-+..|...+.++.-+...+=|-.+.|+.+
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997643221 11111223345667888889999999988888888877777654
No 364
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.64 E-value=1.9e+02 Score=29.60 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002455 329 LARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 391 (920)
Q Consensus 329 ia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~~~ 391 (920)
+.+|+...+.........+....+.+...++.++++++++++++.+.++.++....+.++.-+
T Consensus 25 l~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvR 87 (151)
T PF14584_consen 25 LRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVR 87 (151)
T ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEE
Confidence 344444433322222233566667777777888888888888887777777776666666543
No 365
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.61 E-value=49 Score=41.17 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=15.0
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999985
No 366
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.47 E-value=1.7e+02 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 358 QIQKMEREIRELTKQRDLAQSRVE 381 (920)
Q Consensus 358 ~i~kle~ei~el~~q~d~~q~r~e 381 (920)
++..+++++.+++.+.+.++.+++
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 367
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=24.47 E-value=31 Score=32.11 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.4
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999865
No 368
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=24.46 E-value=26 Score=41.65 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCccEEEEEeccCCcCcccccCCCchh---------HHHHHHHHHHh
Q 002455 60 SGINSSIFAYGQTSSGKTYTMTGITEC---------TVADIFDYIHR 97 (920)
Q Consensus 60 ~G~NatIfAYGQTGSGKTyTM~GIipr---------al~dLF~~I~~ 97 (920)
.++|. +-.|++|+||||...++-+. ++..||..+..
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST 252 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH
Confidence 56775 55699999999988765554 24566666654
No 369
>PRK04325 hypothetical protein; Provisional
Probab=24.26 E-value=4.7e+02 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 359 IQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 359 i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
|+.|.+.+-+.+++++.++.++..|...+
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=24.22 E-value=36 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.2
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
..+.-.|++|||||.++.
T Consensus 16 e~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 16 VGVLITGDSGIGKTELAL 33 (107)
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 345677999999998763
No 371
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.18 E-value=1.4e+02 Score=26.11 Aligned_cols=16 Identities=44% Similarity=0.738 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 002455 321 LVKHLQKELARLESEL 336 (920)
Q Consensus 321 lik~Lq~Eia~Le~eL 336 (920)
.+..|++++..++.++
T Consensus 5 E~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 5 EIERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 372
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=24.18 E-value=53 Score=34.27 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHHhC-Cc--cEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~-G~--NatIfAYGQTGSGKTyTM~ 81 (920)
+-+-+|.++. |+ ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 3456777775 43 4467888999999998764
No 373
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=24.17 E-value=33 Score=34.46 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.3
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999853
No 374
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=24.08 E-value=57 Score=34.34 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.6
Q ss_pred HHHHHHhC-Cc--cEEEEEeccCCcCcccccC
Q 002455 53 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~-G~--NatIfAYGQTGSGKTyTM~ 81 (920)
+-++.++. |+ ..++.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 44667664 54 5678889999999998653
No 375
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.06 E-value=2.6e+02 Score=34.82 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.7
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999988
No 376
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.93 E-value=68 Score=40.41 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=15.1
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
.++++-+|+||+|||++.
T Consensus 484 ~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELA 501 (731)
T ss_pred ceeEEEECCCCccHHHHH
Confidence 356888999999999875
No 377
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.76 E-value=3.5e+02 Score=30.81 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 322 VKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 384 (920)
Q Consensus 322 ik~Lq~Eia~Le~eL~~~~~~~s--~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~ 384 (920)
...|+.++..|++.......... -......+.+.+.+|..+++++.+++.++..++.+++.+.
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666654433211100 0011223444445555555555555555555554444433
No 378
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=23.73 E-value=90 Score=35.05 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.9
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.|+-.|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999873
No 379
>PRK14532 adenylate kinase; Provisional
Probab=23.64 E-value=37 Score=34.59 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.4
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 380
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.45 E-value=3e+02 Score=35.07 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002455 360 QKMEREIRELTKQRDLAQSRVEDLLRMVGCD 390 (920)
Q Consensus 360 ~kle~ei~el~~q~d~~q~r~e~l~~~~~~~ 390 (920)
..|+.+++|..+..+.+|++.++|++.+...
T Consensus 437 ~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 4466777788888888888888777766543
No 381
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=23.44 E-value=37 Score=33.58 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.3
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999998765
No 382
>PRK00300 gmk guanylate kinase; Provisional
Probab=23.34 E-value=36 Score=35.03 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.0
Q ss_pred cEEEEEeccCCcCccccc
Q 002455 63 NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM 80 (920)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778899999999654
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=23.32 E-value=62 Score=34.64 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHHHHhC-C--ccEEEEEeccCCcCcccc
Q 002455 53 EIALSVVS-G--INSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 53 pLV~svL~-G--~NatIfAYGQTGSGKTyT 79 (920)
+-++.++. | ...+++-+|++|||||.-
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 44566665 4 357889999999999863
No 384
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=23.28 E-value=56 Score=40.67 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=21.9
Q ss_pred hHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 43 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 43 QeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
|.++|+.+...+ -+| ..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQK--RIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHHH
Confidence 667776644433 333 45778889999999764
No 385
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=23.24 E-value=41 Score=31.06 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.9
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999765
No 386
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=23.19 E-value=1.1e+02 Score=35.66 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=29.6
Q ss_pred eCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 37 FWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 37 F~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
|+-...|..+++- +-+.++.|-.-+|+-.|+-|||||+-+
T Consensus 27 ~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 27 FGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred eehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 3444456666654 234667898889999999999999987
No 387
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=2.8e+02 Score=34.46 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 002455 354 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSR 394 (920)
Q Consensus 354 ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~~~~~~ 394 (920)
.++.+|+.++.+|..|++++.....++++|.+.+.....-+
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999988765433
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.09 E-value=43 Score=42.11 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccCCCchhH
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITECT 87 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~GIipra 87 (920)
.+++-+..+....++-||++|+|||....|+..++
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444444555567889999999999887654443
No 389
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=22.98 E-value=43 Score=42.44 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.8
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999765
No 390
>PHA01747 putative ATP-dependent protease
Probab=22.96 E-value=40 Score=39.44 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 47 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 47 Ye~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+=.-.-|+|+....+-|.-++=.|+.||||||+.
T Consensus 174 ~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 174 TLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred HHHhhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 3344567787667788999999999999999984
No 391
>PRK09039 hypothetical protein; Validated
Probab=22.91 E-value=3.5e+02 Score=31.21 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q 002455 322 VKHLQKELARLESEL 336 (920)
Q Consensus 322 ik~Lq~Eia~Le~eL 336 (920)
+..|+.+|+.|+.+|
T Consensus 139 V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 139 VELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 392
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.85 E-value=49 Score=38.85 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHhCCccEEEEEeccCCcCccccc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+-.++.|.++..+| +||||||-+.
T Consensus 92 iP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 92 IPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred cchhhCCCcEEEEe--ccCCCchhhh
Confidence 44678899886666 9999999776
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.84 E-value=96 Score=36.90 Aligned_cols=19 Identities=42% Similarity=0.438 Sum_probs=16.2
Q ss_pred cEEEEEeccCCcCcccccC
Q 002455 63 NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~ 81 (920)
...|+..|.+|+|||+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999974
No 394
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.83 E-value=9.2e+02 Score=26.21 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHH
Q 002455 289 HVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASS------TCDYVALLRKKDLQIQKM 362 (920)
Q Consensus 289 ~~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~eL~~~~~~~s------~~~~~~~l~ekd~~i~kl 362 (920)
.+...|..|+-|+.=+... ...+--+|.+|+..|+.+-+......+ ...+...|++++.+|..|
T Consensus 7 ~LQ~AL~~LQaa~ekRE~l----------E~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaL 76 (205)
T PF12240_consen 7 RLQQALAQLQAACEKREQL----------ERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILAL 76 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456677777775443221 123455788888888877665443322 233567799999999999
Q ss_pred HHHHHHHHHHH
Q 002455 363 EREIRELTKQR 373 (920)
Q Consensus 363 e~ei~el~~q~ 373 (920)
|.++...+...
T Consensus 77 Ead~~kWEqkY 87 (205)
T PF12240_consen 77 EADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHH
Confidence 98887665443
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=22.69 E-value=1e+02 Score=36.66 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=16.5
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
-..|+..|.+|+|||.|...
T Consensus 99 p~vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGK 118 (428)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 35788889999999999643
No 396
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=22.67 E-value=72 Score=37.63 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.9
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
..|+-+|+||+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56899999999999875
No 397
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=22.62 E-value=27 Score=37.34 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.8
Q ss_pred eccCCcCccccc
Q 002455 69 YGQTSSGKTYTM 80 (920)
Q Consensus 69 YGQTGSGKTyTM 80 (920)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999986
No 398
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=22.62 E-value=47 Score=42.15 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.7
Q ss_pred EEEEeccCCcCcccccCCCc
Q 002455 65 SIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIi 84 (920)
.++-||++|+|||+...|+.
T Consensus 209 n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CeEEECCCCCCHHHHHHHHH
Confidence 34559999999999976653
No 399
>PRK06762 hypothetical protein; Provisional
Probab=22.59 E-value=42 Score=33.41 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.3
Q ss_pred EEEEeccCCcCcccc
Q 002455 65 SIFAYGQTSSGKTYT 79 (920)
Q Consensus 65 tIfAYGQTGSGKTyT 79 (920)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999874
No 400
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.56 E-value=48 Score=40.84 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=26.1
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCccccc
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM 80 (920)
+||.|.+ |+.|.+. |...+-.| ..-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666664 4444433 33333344 3446788999999999887
No 401
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.55 E-value=4.7e+02 Score=25.39 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 353 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 385 (920)
Q Consensus 353 ~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~ 385 (920)
.+...++..+.++..+|+.+.+.++.++.++.+
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555556666666666666655555544
No 402
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=76 Score=35.64 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.6
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+.||+.|+|||..-
T Consensus 207 GvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMA 222 (424)
T ss_pred ceEeeCCCCCcHHHHH
Confidence 5899999999998643
No 403
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=22.49 E-value=55 Score=37.94 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=24.8
Q ss_pred EEEEEeccCCcCcccccC---C-Cc---------hhHHHHHHHHHHhcc
Q 002455 64 SSIFAYGQTSSGKTYTMT---G-IT---------ECTVADIFDYIHRHE 99 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~---G-Ii---------pral~dLF~~I~~~~ 99 (920)
-.|--||..|.|||+-|- . +. -.++.+++..+....
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh
Confidence 458899999999999982 1 11 146677777666543
No 404
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=22.39 E-value=48 Score=41.00 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.3
Q ss_pred HHHHHhCC-ccEEEEEeccCCcCcccccC
Q 002455 54 IALSVVSG-INSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 54 LV~svL~G-~NatIfAYGQTGSGKTyTM~ 81 (920)
+...+-.| ..-+++-||+.|+|||.++.
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHH
Confidence 33333344 34468889999999998773
No 405
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=22.32 E-value=49 Score=40.73 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=27.4
Q ss_pred ceecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCcccc
Q 002455 30 IHLIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 79 (920)
Q Consensus 30 sFtFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyT 79 (920)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-+|.+|+||++.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~-----~~~~a-~~~~pvli~Ge~GtGK~~~ 364 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHF-----GRQAA-KSSFPVLLCGEEGVGKALL 364 (638)
T ss_pred cccccceEECCHHHHHHHHH-----HHHHh-CcCCCEEEECCCCcCHHHH
Confidence 45677777654333333332 22222 4567799999999999765
No 406
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.21 E-value=5e+02 Score=28.51 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 319 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQS 378 (920)
Q Consensus 319 ~~lik~Lq~Eia~Le~eL~~~~~~~s~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~ 378 (920)
...+.+|++|+..|..|-. .....|++....|..|+..|++.+.+++..+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~---------~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERM---------AHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888877776643 23445555566666666666666555554443
No 407
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=21.95 E-value=51 Score=39.64 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=30.5
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
.|+.+.+.+..-..+++.+.+ +...+..|+-+|.+|+||++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~------~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV------VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH------HhCCCCcEEEECCCCccHHHHH
Confidence 677788766555555555322 3466889999999999998653
No 408
>PRK06851 hypothetical protein; Provisional
Probab=21.89 E-value=53 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 50 GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 50 ~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
+...+.+.++.|.+-.++-.|..|+|||++|
T Consensus 17 Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 17 GFYSLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred chhhhhhhhccccceEEEEECCCCCCHHHHH
No 409
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.85 E-value=56 Score=40.93 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=26.1
Q ss_pred eecceEeCCCCChHHHHHHhHHHHHHHHhCCc-cEEEEEeccCCcCccccc
Q 002455 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 31 FtFD~VF~~~asQeeVYe~~~~pLV~svL~G~-NatIfAYGQTGSGKTyTM 80 (920)
-+||.|++. +.+ .+.|...+-.|. .-.++-||+.|+|||.+.
T Consensus 12 ktFddVIGQ----e~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 12 RNFNELVGQ----NHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CCHHHhcCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 356766653 333 333333334553 457788999999999775
No 410
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.73 E-value=5e+02 Score=29.69 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 359 IQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 359 i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
+..++..|++...++..++.++.++.+..
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 411
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.67 E-value=2.3e+02 Score=33.62 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 002455 318 DKALVKHLQKELARLESELRS 338 (920)
Q Consensus 318 ~~~lik~Lq~Eia~Le~eL~~ 338 (920)
.+..|+.|+.||.||+..|+.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999998853
No 412
>PRK13531 regulatory ATPase RavA; Provisional
Probab=21.64 E-value=68 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=21.6
Q ss_pred HhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 49 DGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 49 ~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
++++-++..++.|-| |+-+|++|+|||+..
T Consensus 27 ~vI~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 27 HAIRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 345555666666665 577899999999865
No 413
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=21.57 E-value=46 Score=37.66 Aligned_cols=37 Identities=22% Similarity=0.524 Sum_probs=25.0
Q ss_pred EEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEEEEeeeeeeecc
Q 002455 65 SIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNE 115 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~V~vS~lEIYnE 115 (920)
.|+-.|+||||||---. .+.+.. .-.|.+=.++||.+
T Consensus 6 ii~I~GpTasGKS~LAl------------~LA~~~--~eIIsaDS~QvYr~ 42 (300)
T PRK14729 6 IVFIFGPTAVGKSNILF------------HFPKGK--AEIINVDSIQVYKE 42 (300)
T ss_pred EEEEECCCccCHHHHHH------------HHHHhC--CcEEeccHHHHHCC
Confidence 57888999999986321 122221 24677778899976
No 414
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=21.46 E-value=38 Score=42.45 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.8
Q ss_pred cEEEEEeccCCcCcccccCC
Q 002455 63 NSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 63 NatIfAYGQTGSGKTyTM~G 82 (920)
|.-++-.|+||||||++|.-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~ 453 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNF 453 (785)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 66678889999999999844
No 415
>PRK04040 adenylate kinase; Provisional
Probab=21.45 E-value=42 Score=35.03 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=13.9
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999875
No 416
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.44 E-value=5.4e+02 Score=25.98 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002455 318 DKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 388 (920)
Q Consensus 318 ~~~lik~Lq~Eia~Le~eL~~~~~~~s--~~~~~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~ 388 (920)
|...|.+|++ +..|+...+......+ .....+.+.+....|+-.+.-+++|+.+.+.-.+++..|...+.
T Consensus 47 D~~vVsEL~~-Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~ 118 (131)
T PF04859_consen 47 DEAVVSELRR-LSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLD 118 (131)
T ss_pred HHHHHHHHHH-HHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666653 5666665544333222 11122233344444444444445555555444444444444443
No 417
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=21.44 E-value=41 Score=39.70 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=15.1
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999875
No 418
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=21.31 E-value=65 Score=38.37 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.6
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999864
No 419
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=21.30 E-value=47 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEEeccCCcCcccccCCCchhHH
Q 002455 64 SSIFAYGQTSSGKTYTMTGITECTV 88 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~GIipral 88 (920)
.-++++|+||||||..+ ++|..+
T Consensus 176 ~HvlviapTgSGKgvg~--ViPnLL 198 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGL--VVPTLL 198 (636)
T ss_pred ceEEEEecCCCCCceEE--Eccchh
Confidence 44899999999999977 556544
No 420
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=21.27 E-value=48 Score=34.67 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEeccCCcCccccc------CCCchhHHHHHHH
Q 002455 66 IFAYGQTSSGKTYTM------TGITECTVADIFD 93 (920)
Q Consensus 66 IfAYGQTGSGKTyTM------~GIipral~dLF~ 93 (920)
|+.+|+.|||||+.- +|+..-.+.+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHH
Confidence 678999999998754 4655555555554
No 421
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.18 E-value=44 Score=41.14 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=18.1
Q ss_pred HHHHhCCccEEEEEeccCCcCcccccCCCc
Q 002455 55 ALSVVSGINSSIFAYGQTSSGKTYTMTGIT 84 (920)
Q Consensus 55 V~svL~G~NatIfAYGQTGSGKTyTM~GIi 84 (920)
|..++.. ...+-.|..|||||||+..++
T Consensus 154 ~~~al~~--~~~vitGgpGTGKTt~v~~ll 181 (586)
T TIGR01447 154 VALALKS--NFSLITGGPGTGKTTTVARLL 181 (586)
T ss_pred HHHHhhC--CeEEEEcCCCCCHHHHHHHHH
Confidence 3344442 344556889999999986543
No 422
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.14 E-value=2.2e+02 Score=34.37 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 002455 322 VKHLQKELARLESEL 336 (920)
Q Consensus 322 ik~Lq~Eia~Le~eL 336 (920)
..+|+++++.|+.++
T Consensus 78 asELEKqLaaLrqEl 92 (475)
T PRK13729 78 AAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 423
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=21.08 E-value=66 Score=39.35 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=24.2
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCccccc
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM 80 (920)
+||.|.+ |+.|... +-..+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~~----L~~~i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITKT----LKNAIKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666654 4444433 22233334 3445666999999999775
No 424
>COG1162 Predicted GTPases [General function prediction only]
Probab=21.04 E-value=1e+02 Score=34.99 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccCCCch
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITE 85 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~GIip 85 (920)
..+...+.|. .+||+ ||+|-|||.-+-=+.|
T Consensus 156 ~~l~~~l~~~-~svl~-GqSGVGKSSLiN~L~p 186 (301)
T COG1162 156 EELAELLAGK-ITVLL-GQSGVGKSTLINALLP 186 (301)
T ss_pred HHHHHHhcCC-eEEEE-CCCCCcHHHHHHhhCc
Confidence 3455667777 56665 9999999988765555
No 425
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=21.02 E-value=33 Score=42.54 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=19.4
Q ss_pred ccEEEEEeccCCcCcccccCCCchhHH
Q 002455 62 INSSIFAYGQTSSGKTYTMTGITECTV 88 (920)
Q Consensus 62 ~NatIfAYGQTGSGKTyTM~GIipral 88 (920)
.+.=++..|.||+|||..+..++..++
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i 201 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDI 201 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 344567889999999988755554444
No 426
>PRK00846 hypothetical protein; Provisional
Probab=20.94 E-value=6.7e+02 Score=23.17 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHh
Q 002455 324 HLQKELARLESEL 336 (920)
Q Consensus 324 ~Lq~Eia~Le~eL 336 (920)
.+...|..|+..+
T Consensus 10 ~le~Ri~~LE~rl 22 (77)
T PRK00846 10 ALEARLVELETRL 22 (77)
T ss_pred hHHHHHHHHHHHH
Confidence 4556666666655
No 427
>PRK14530 adenylate kinase; Provisional
Probab=20.93 E-value=43 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.3
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-.|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999998765
No 428
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.90 E-value=43 Score=35.45 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.5
Q ss_pred EEEEeccCCcCcccccC
Q 002455 65 SIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~ 81 (920)
.+.-.|+.|||||.+|-
T Consensus 27 i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 27 FSAIVGPNGSGKSNVID 43 (212)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34467999999999983
No 429
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=20.88 E-value=84 Score=38.57 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEeccCCcCcccccCCCchhHHHHHHHHHHhcccC
Q 002455 65 SIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEER 101 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~ 101 (920)
-++.+|.||||||.. +..|.+++....++
T Consensus 178 h~li~G~tGsGKs~~--------i~~ll~~~~~~g~~ 206 (566)
T TIGR02759 178 HILIHGTTGSGKSVA--------IRKLLRWIRQRGDR 206 (566)
T ss_pred ceEEEcCCCCCHHHH--------HHHHHHHHHhcCCe
Confidence 468899999999964 34444555444443
No 430
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=5.8e+02 Score=28.44 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhccccceeeccccCHHHHHHHHHHHHHHHHHH
Q 002455 290 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESE 335 (920)
Q Consensus 290 ~eETLsTLrFAsrAK~Ikn~p~vN~~~s~~~lik~Lq~Eia~Le~e 335 (920)
+.-++.++.++.....+...-+.-.....+.+ .|.+++..++++
T Consensus 22 ~s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~ 65 (247)
T COG3879 22 LSISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKK 65 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHH
Confidence 34456677777666665555444333332222 444555444443
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=20.83 E-value=43 Score=34.35 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEEeccCCcCccccc
Q 002455 65 SIFAYGQTSSGKTYTM 80 (920)
Q Consensus 65 tIfAYGQTGSGKTyTM 80 (920)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999764
No 432
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.80 E-value=1.9e+02 Score=30.54 Aligned_cols=61 Identities=23% Similarity=0.430 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 322 VKHLQKELARLESELRSPAPASSTCDY-VALLRK--KDLQIQKMEREIRELTKQRDLAQSRVEDLLR 385 (920)
Q Consensus 322 ik~Lq~Eia~Le~eL~~~~~~~s~~~~-~~~l~e--kd~~i~kle~ei~el~~q~d~~q~r~e~l~~ 385 (920)
...|..+|.+|.+.+++.... |.+ .+.++. +.+-+.+|+++|.+|+++......|+..+..
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t---~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQT---CSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766544332 222 233333 2345778888888888888888877776654
No 433
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=20.76 E-value=41 Score=37.47 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.9
Q ss_pred HHHHHHhCC---ccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSG---INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G---~NatIfAYGQTGSGKTyTM 80 (920)
.++-.+|.| .-..+|.||..|+|||..+
T Consensus 63 ~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 63 RVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 334444544 4467999999999998765
No 434
>PRK14527 adenylate kinase; Provisional
Probab=20.71 E-value=49 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.3
Q ss_pred EEEEEeccCCcCccccc
Q 002455 64 SSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM 80 (920)
-.|+.+|++|||||+..
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999998754
No 435
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.68 E-value=1.9e+02 Score=32.93 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.1
Q ss_pred hhhhhhcc
Q 002455 694 IQTFVAGL 701 (920)
Q Consensus 694 ~~~~v~~l 701 (920)
+.++|..+
T Consensus 245 ~L~~~~q~ 252 (314)
T PF04111_consen 245 FLDCLQQL 252 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 436
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=20.67 E-value=74 Score=26.22 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=17.0
Q ss_pred CcccccCC------CchhHHHHHHHHHHhcc
Q 002455 75 GKTYTMTG------ITECTVADIFDYIHRHE 99 (920)
Q Consensus 75 GKTyTM~G------Iipral~dLF~~I~~~~ 99 (920)
||||+.+| +-...-..+|+++...+
T Consensus 3 GktY~~~g~~F~~g~ee~V~kk~y~YL~~ne 33 (43)
T PF14553_consen 3 GKTYYAMGHRFLLGQEEKVSKKIYNYLNDNE 33 (43)
T ss_dssp -SEEEETTEEEEBT-EEEE-HHHHHHHHHST
T ss_pred CcEEEEeeeEEeCCCeeehhHHHHHHHhcCC
Confidence 89999987 33345678899888765
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.65 E-value=61 Score=39.21 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=25.0
Q ss_pred ecceEeCCCCChHHHHHHhHHHHHHHHhCC-ccEEEEEeccCCcCccccc
Q 002455 32 LIDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 32 tFD~VF~~~asQeeVYe~~~~pLV~svL~G-~NatIfAYGQTGSGKTyTM 80 (920)
+||.|.+ |+.|-. .+...+-.| ..-+++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 5666664 344433 233333333 4556888999999999764
No 438
>PRK03839 putative kinase; Provisional
Probab=20.64 E-value=45 Score=33.80 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.2
Q ss_pred EEEeccCCcCcccc
Q 002455 66 IFAYGQTSSGKTYT 79 (920)
Q Consensus 66 IfAYGQTGSGKTyT 79 (920)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 439
>PTZ00014 myosin-A; Provisional
Probab=20.58 E-value=91 Score=40.04 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHHHHh-CCccEEEEEeccCCcCccccc
Q 002455 45 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 45 eVYe~~~~pLV~svL-~G~NatIfAYGQTGSGKTyTM 80 (920)
.||.- +.....+++ .|.|-||+.-|.+|||||.+.
T Consensus 165 Hifav-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 165 HVFTT-ARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 37744 444455554 689999999999999999875
No 440
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=20.56 E-value=61 Score=42.38 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
..|..++.|.+.+ +..|..|+||||+|
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 3566777777654 47899999999987
No 441
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=20.53 E-value=30 Score=35.73 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCCCchh
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTGITEC 86 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~GIipr 86 (920)
-+...+.| . +++-.||+|.|||..+-.++|.
T Consensus 28 ~l~~~l~~-k-~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 28 ELKELLKG-K-TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHTT-S-EEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHhcC-C-EEEEECCCCCCHHHHHHHHHhh
Confidence 34566777 4 4455699999999887544443
No 442
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=20.48 E-value=41 Score=38.70 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=16.9
Q ss_pred HhCCccEE------EEEeccCCcCccccc
Q 002455 58 VVSGINSS------IFAYGQTSSGKTYTM 80 (920)
Q Consensus 58 vL~G~Nat------IfAYGQTGSGKTyTM 80 (920)
+++|+|-. +.-.|++|||||+++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 34555544 456799999999998
No 443
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=20.47 E-value=34 Score=43.04 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=30.1
Q ss_pred EEEeccCCcCcccccCCCchhHHHHHHHHHHhcccCcEE--EEeeeeee-eccceeecC-CC
Q 002455 66 IFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFV--LKFSAMEI-YNEAIRDLL-ST 123 (920)
Q Consensus 66 IfAYGQTGSGKTyTM~GIipral~dLF~~I~~~~e~~f~--V~vS~lEI-YnE~V~DLL-s~ 123 (920)
++..|.||||||.+|.++ .+.+....++.+. .+..|++- |+.. .|.+ +|
T Consensus 188 ~li~GttGSGKS~~i~~L--------L~~ir~RGdrAIIyD~~GeFv~~FY~p~-~DiILNP 240 (732)
T PRK13700 188 FCLHGTVGAGKSEVIRRL--------ANYARQRGDMVVIYDRSGEFVKSYYDPS-IDKILNP 240 (732)
T ss_pred eEEeCCCCCCHHHHHHHH--------HHHHHHcCCeEEEEeCCCchHHHhcCCc-cceeeCC
Confidence 578899999999976543 4455555554433 44567765 4443 3543 44
No 444
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.44 E-value=55 Score=37.05 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=26.5
Q ss_pred cceEeCCCCChHHHHHHhHHHHHHHHhCCccEEEEEeccCCcCccccc
Q 002455 33 IDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 80 (920)
Q Consensus 33 FD~VF~~~asQeeVYe~~~~pLV~svL~G~NatIfAYGQTGSGKTyTM 80 (920)
||.+++.+..-..+.+. +..+ ...+.-|+-+|.+||||++.-
T Consensus 5 ~~~liG~S~~~~~~~~~-----i~~~-a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQ-----VSRL-APLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHHHHHHHHH-----HHHH-hCCCCCEEEECCCCCcHHHHH
Confidence 56666655444445444 2222 245677888999999997653
No 445
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.41 E-value=63 Score=40.14 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=27.1
Q ss_pred eecceEeCCCCChHHHHHHhHHHHHHHHhCCc-cEEEEEeccCCcCcccccC
Q 002455 31 HLIDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 31 FtFD~VF~~~asQeeVYe~~~~pLV~svL~G~-NatIfAYGQTGSGKTyTM~ 81 (920)
-+||.|++ |+.|... |...+-.|. .-.++-||+.|+|||++..
T Consensus 13 ~~f~dviG----Qe~vv~~----L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 13 RSFSEMVG----QEHVVQA----LTNALTQQRLHHAYLFTGTRGVGKTTVSR 56 (618)
T ss_pred CCHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 36777775 4444432 333333443 3567889999999998863
No 446
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=20.37 E-value=77 Score=35.26 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCc---cEEEEEeccCCcCcccccC
Q 002455 51 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 51 ~~pLV~svL~G~---NatIfAYGQTGSGKTyTM~ 81 (920)
..+-++.++.|- ...+.-||++|||||..+.
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 335567777653 5667899999999997653
No 447
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.31 E-value=97 Score=39.93 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred EEEEEeccCCcCcccccC
Q 002455 64 SSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 64 atIfAYGQTGSGKTyTM~ 81 (920)
++++-+|+||+|||+...
T Consensus 597 ~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETAL 614 (852)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568889999999999853
No 448
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=20.28 E-value=59 Score=41.15 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHHhCCccEEEEEeccCCcCcccccCC
Q 002455 54 IALSVVSGINSSIFAYGQTSSGKTYTMTG 82 (920)
Q Consensus 54 LV~svL~G~NatIfAYGQTGSGKTyTM~G 82 (920)
.|..++.+ +..++-.|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 34455555 33566789999999999865
No 449
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.23 E-value=3.4e+02 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002455 349 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 387 (920)
Q Consensus 349 ~~~l~ekd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~ 387 (920)
...+++...++..+.+++.+|+.+++....+-+.|++.+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777778888887777777777776654
No 450
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.19 E-value=73 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002455 362 MEREIRELTKQRDLAQSRVEDLLR 385 (920)
Q Consensus 362 le~ei~el~~q~d~~q~r~e~l~~ 385 (920)
|..+|.+|+.+...++++++.|..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555554443
No 451
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.19 E-value=2.2e+02 Score=33.91 Aligned_cols=14 Identities=50% Similarity=0.786 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 002455 323 KHLQKELARLESEL 336 (920)
Q Consensus 323 k~Lq~Eia~Le~eL 336 (920)
++.+++|++++..+
T Consensus 41 ~q~q~ei~~~~~~i 54 (420)
T COG4942 41 KQIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 452
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=20.15 E-value=44 Score=33.29 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.3
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999997753
No 453
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.14 E-value=3.6e+02 Score=35.64 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.3
Q ss_pred EEeccCCcCcccccC
Q 002455 67 FAYGQTSSGKTYTMT 81 (920)
Q Consensus 67 fAYGQTGSGKTyTM~ 81 (920)
|--|+.||||+-.|.
T Consensus 66 fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILT 80 (1074)
T ss_pred EeecCCCCcHHHHHH
Confidence 778999999999885
No 454
>PRK00295 hypothetical protein; Provisional
Probab=20.11 E-value=5.6e+02 Score=22.79 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002455 355 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 391 (920)
Q Consensus 355 kd~~i~kle~ei~el~~q~d~~q~r~e~l~~~~~~~~ 391 (920)
.+.-|..|.+.+-+.+++++.++.++..|.+.+.+..
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888888888888988888888877776643
No 455
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=20.03 E-value=44 Score=37.52 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.6
Q ss_pred EEEeccCCcCccccc
Q 002455 66 IFAYGQTSSGKTYTM 80 (920)
Q Consensus 66 IfAYGQTGSGKTyTM 80 (920)
|+..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567799999999874
No 456
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.03 E-value=91 Score=36.96 Aligned_cols=29 Identities=31% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHhCCccEEEEEeccCCcCcccccC
Q 002455 53 EIALSVVSGINSSIFAYGQTSSGKTYTMT 81 (920)
Q Consensus 53 pLV~svL~G~NatIfAYGQTGSGKTyTM~ 81 (920)
.-++.+-+|....-|..|.-||||||.+.
T Consensus 39 ~~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 39 RDLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 34677889999999999999999999863
Done!