Query 002458
Match_columns 919
No_of_seqs 835 out of 5466
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 00:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.7E-98 2E-102 938.7 78.8 818 1-856 193-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.6E-58 1.4E-62 546.2 32.1 517 3-533 169-732 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-37 4.1E-42 336.2 17.1 265 1-269 5-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 9E-33 2E-37 349.5 22.1 419 308-733 42-487 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.7E-31 3.6E-36 338.0 19.8 377 332-710 139-540 (968)
6 KOG4194 Membrane glycoprotein 99.9 5.1E-28 1.1E-32 259.4 4.4 397 333-741 78-487 (873)
7 KOG0444 Cytoskeletal regulator 99.9 3.2E-28 7E-33 261.9 -5.7 334 334-706 33-375 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 4.6E-28 9.9E-33 260.8 -7.5 315 331-673 53-378 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.7E-30 241.3 2.7 393 344-749 63-476 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 6E-26 1.3E-30 233.9 -10.5 299 351-656 85-474 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 5.9E-25 1.3E-29 226.7 -9.4 350 335-706 116-541 (565)
12 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.3E-25 239.7 24.4 282 376-665 556-854 (1153)
13 KOG0618 Serine/threonine phosp 99.8 1.8E-22 3.9E-27 228.7 -3.5 364 345-732 33-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 2E-18 4.2E-23 203.3 15.3 258 383-711 206-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 7.1E-18 1.5E-22 198.6 19.1 256 338-652 206-461 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.5E-23 206.7 12.0 244 358-647 179-426 (754)
17 KOG0618 Serine/threonine phosp 99.8 1.4E-20 3E-25 213.6 -5.6 346 335-704 47-487 (1081)
18 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.5E-22 198.3 11.5 249 377-678 177-425 (754)
19 KOG4237 Extracellular matrix p 99.6 1.2E-17 2.7E-22 172.9 -3.5 125 333-457 67-199 (498)
20 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 153.6 -3.5 165 419-634 29-194 (264)
21 KOG4237 Extracellular matrix p 99.6 1.8E-16 4E-21 164.3 -2.1 266 385-654 53-340 (498)
22 KOG0617 Ras suppressor protein 99.5 9.8E-17 2.1E-21 147.7 -5.1 159 392-552 25-184 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 4.9E-15 1.1E-19 163.4 -2.3 35 613-647 250-289 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-14 3.5E-19 159.2 -0.1 165 465-648 76-262 (319)
25 PRK04841 transcriptional regul 99.4 4.2E-11 9.1E-16 151.4 27.0 283 3-305 21-335 (903)
26 KOG0532 Leucine-rich repeat (L 99.2 6.9E-13 1.5E-17 144.1 -1.8 231 405-668 55-291 (722)
27 PF05729 NACHT: NACHT domain 99.1 4.5E-10 9.9E-15 110.7 13.0 141 16-165 1-163 (166)
28 KOG4658 Apoptotic ATPase [Sign 99.1 2.5E-11 5.4E-16 146.9 4.4 251 400-653 523-787 (889)
29 PRK00411 cdc6 cell division co 99.1 3.3E-08 7.2E-13 112.2 25.5 271 2-284 40-358 (394)
30 KOG3207 Beta-tubulin folding c 99.0 5E-11 1.1E-15 126.2 1.2 206 421-648 119-338 (505)
31 KOG3207 Beta-tubulin folding c 99.0 3.4E-11 7.4E-16 127.5 -0.8 142 468-626 195-339 (505)
32 COG4886 Leucine-rich repeat (L 99.0 3.4E-10 7.4E-15 128.6 7.0 197 427-653 97-294 (394)
33 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.8E-15 116.9 2.1 57 588-647 352-410 (490)
34 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.2E-16 131.7 -3.7 213 445-695 74-293 (722)
35 COG4886 Leucine-rich repeat (L 99.0 7.5E-10 1.6E-14 125.8 7.5 191 361-555 97-291 (394)
36 TIGR03015 pepcterm_ATPase puta 99.0 3.6E-08 7.8E-13 105.7 19.7 178 15-200 43-242 (269)
37 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.2E-15 115.6 0.7 132 400-535 284-416 (490)
38 KOG1909 Ran GTPase-activating 98.9 5.1E-11 1.1E-15 123.0 -3.5 202 417-648 86-310 (382)
39 TIGR02928 orc1/cdc6 family rep 98.9 4.3E-07 9.3E-12 102.1 26.5 272 2-284 25-350 (365)
40 COG2909 MalT ATP-dependent tra 98.9 1.6E-07 3.5E-12 108.4 22.7 274 13-305 35-341 (894)
41 TIGR00635 ruvB Holliday juncti 98.9 4.5E-08 9.7E-13 107.0 16.6 247 14-284 29-289 (305)
42 PRK00080 ruvB Holliday junctio 98.8 3E-08 6.5E-13 109.1 11.3 248 14-284 50-310 (328)
43 PF14580 LRR_9: Leucine-rich r 98.8 2.9E-09 6.3E-14 103.8 2.7 103 518-648 19-125 (175)
44 PF01637 Arch_ATPase: Archaeal 98.8 4E-08 8.7E-13 102.8 11.6 189 2-195 9-233 (234)
45 PF14580 LRR_9: Leucine-rich r 98.7 7.1E-09 1.5E-13 101.1 3.1 132 392-550 11-149 (175)
46 COG3903 Predicted ATPase [Gene 98.7 1.9E-08 4.2E-13 107.5 5.2 281 13-304 12-316 (414)
47 PRK06893 DNA replication initi 98.6 2.8E-07 6.1E-12 95.6 13.0 150 15-196 39-203 (229)
48 COG2256 MGS1 ATPase related to 98.6 2.4E-07 5.2E-12 98.5 12.0 217 13-260 46-288 (436)
49 COG3899 Predicted ATPase [Gene 98.6 8.9E-07 1.9E-11 108.2 18.4 205 96-304 153-388 (849)
50 PLN03150 hypothetical protein; 98.6 5.3E-08 1.1E-12 116.0 7.1 106 447-552 419-526 (623)
51 KOG1909 Ran GTPase-activating 98.6 1.3E-08 2.8E-13 105.6 0.2 137 492-648 90-253 (382)
52 PLN03150 hypothetical protein; 98.5 8.9E-08 1.9E-12 114.1 6.6 105 425-529 420-526 (623)
53 TIGR03420 DnaA_homol_Hda DnaA 98.5 9.1E-07 2E-11 92.1 13.1 162 3-198 28-203 (226)
54 PF13173 AAA_14: AAA domain 98.5 2.8E-07 6E-12 86.4 7.9 119 16-157 3-127 (128)
55 KOG0531 Protein phosphatase 1, 98.5 1.8E-08 3.8E-13 114.8 -1.9 107 442-553 91-198 (414)
56 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 82.8 10.0 114 14-134 3-125 (131)
57 PRK13342 recombination factor 98.4 1.6E-05 3.5E-10 90.3 21.1 161 4-196 27-196 (413)
58 KOG0531 Protein phosphatase 1, 98.4 4.3E-08 9.3E-13 111.7 -0.5 216 400-649 95-318 (414)
59 PRK15386 type III secretion pr 98.4 1.2E-06 2.7E-11 95.7 10.2 57 445-507 51-107 (426)
60 KOG2120 SCF ubiquitin ligase, 98.4 4.9E-09 1.1E-13 105.9 -7.9 105 401-505 186-297 (419)
61 KOG2120 SCF ubiquitin ligase, 98.3 9.4E-09 2E-13 103.8 -8.7 160 466-647 206-374 (419)
62 PRK15386 type III secretion pr 98.3 2.9E-06 6.3E-11 92.8 9.2 133 491-667 49-187 (426)
63 PRK08727 hypothetical protein; 98.3 1.1E-05 2.5E-10 83.8 13.4 145 16-192 42-200 (233)
64 TIGR00678 holB DNA polymerase 98.2 1.5E-05 3.2E-10 80.3 13.6 159 2-191 2-186 (188)
65 PRK12402 replication factor C 98.2 4.1E-05 8.9E-10 85.0 17.9 186 3-194 26-224 (337)
66 PRK09087 hypothetical protein; 98.2 1.4E-05 3E-10 82.5 12.8 138 15-195 44-194 (226)
67 PLN03025 replication factor C 98.2 4.1E-05 8.8E-10 84.0 17.3 166 4-191 25-195 (319)
68 PRK14961 DNA polymerase III su 98.2 4.5E-05 9.8E-10 85.0 17.5 96 96-193 118-217 (363)
69 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 69.3 4.4 59 447-505 2-60 (61)
70 PTZ00112 origin recognition co 98.2 2.8E-05 6E-10 91.0 15.7 221 15-247 781-1031(1164)
71 TIGR01242 26Sp45 26S proteasom 98.2 1.2E-05 2.6E-10 89.9 12.7 148 15-190 156-328 (364)
72 cd00009 AAA The AAA+ (ATPases 98.2 1.5E-05 3.3E-10 76.3 11.8 106 14-136 18-131 (151)
73 PRK07003 DNA polymerase III su 98.2 6.6E-05 1.4E-09 87.7 18.4 99 96-196 118-221 (830)
74 PRK14963 DNA polymerase III su 98.2 3.5E-05 7.6E-10 88.7 16.0 169 15-193 36-214 (504)
75 PRK08084 DNA replication initi 98.2 5.2E-05 1.1E-09 79.0 15.9 148 14-195 44-208 (235)
76 PRK05642 DNA replication initi 98.2 3.1E-05 6.7E-10 80.6 14.1 150 15-196 45-208 (234)
77 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.7E-11 68.6 3.8 58 495-552 2-60 (61)
78 PRK14949 DNA polymerase III su 98.1 9E-05 2E-09 88.3 18.7 98 95-194 117-218 (944)
79 PRK14960 DNA polymerase III su 98.1 0.00022 4.8E-09 82.5 21.4 178 4-193 27-216 (702)
80 KOG4341 F-box protein containi 98.1 7.9E-08 1.7E-12 101.9 -6.0 254 419-705 160-438 (483)
81 KOG2028 ATPase related to the 98.1 2.3E-05 5E-10 81.8 11.7 127 13-164 160-293 (554)
82 PRK05564 DNA polymerase III su 98.1 0.0002 4.4E-09 78.3 19.6 165 4-196 16-190 (313)
83 PF00308 Bac_DnaA: Bacterial d 98.1 3.6E-05 7.9E-10 79.1 12.8 158 14-194 33-206 (219)
84 PRK04195 replication factor C 98.1 5.7E-05 1.2E-09 87.6 15.9 166 2-194 24-200 (482)
85 KOG1859 Leucine-rich repeat pr 98.1 7.4E-08 1.6E-12 108.2 -8.1 177 350-531 102-292 (1096)
86 PRK14087 dnaA chromosomal repl 98.0 0.00011 2.3E-09 83.9 16.6 163 16-197 142-320 (450)
87 PRK14962 DNA polymerase III su 98.0 0.00033 7.1E-09 80.1 20.3 101 96-198 116-221 (472)
88 PRK13341 recombination factor 98.0 0.0003 6.5E-09 84.3 20.7 149 13-191 50-212 (725)
89 PRK08903 DnaA regulatory inact 98.0 3.5E-05 7.5E-10 80.2 11.3 151 14-200 41-203 (227)
90 PRK09376 rho transcription ter 98.0 1.2E-05 2.7E-10 87.0 7.7 94 16-111 170-270 (416)
91 PRK14956 DNA polymerase III su 98.0 0.00022 4.8E-09 80.2 17.8 166 16-191 41-217 (484)
92 PRK12323 DNA polymerase III su 98.0 9.1E-05 2E-09 85.4 14.9 98 95-194 122-223 (700)
93 PRK00440 rfc replication facto 98.0 0.00034 7.3E-09 77.0 19.2 169 3-193 28-200 (319)
94 cd01128 rho_factor Transcripti 98.0 8.2E-06 1.8E-10 84.9 5.6 95 15-111 16-117 (249)
95 PRK14957 DNA polymerase III su 98.0 0.00013 2.8E-09 84.2 15.4 100 95-196 117-221 (546)
96 KOG2982 Uncharacterized conser 97.9 5.3E-06 1.2E-10 84.3 3.2 86 587-674 198-285 (418)
97 KOG1859 Leucine-rich repeat pr 97.9 8E-08 1.7E-12 107.9 -10.8 98 448-551 166-264 (1096)
98 TIGR00362 DnaA chromosomal rep 97.9 0.00045 9.8E-09 78.5 18.8 156 16-194 137-308 (405)
99 PRK06645 DNA polymerase III su 97.9 0.00082 1.8E-08 77.2 20.7 96 95-192 126-225 (507)
100 PRK08691 DNA polymerase III su 97.9 0.00042 9.1E-09 81.0 18.3 97 96-194 118-218 (709)
101 PRK07940 DNA polymerase III su 97.9 0.00018 3.9E-09 80.2 14.8 94 96-196 116-213 (394)
102 PRK03992 proteasome-activating 97.9 0.00015 3.3E-09 81.4 14.3 148 14-189 164-336 (389)
103 PRK00149 dnaA chromosomal repl 97.9 0.00022 4.8E-09 82.1 15.8 178 15-215 148-349 (450)
104 TIGR02397 dnaX_nterm DNA polym 97.9 0.00096 2.1E-08 74.6 20.5 99 96-196 116-218 (355)
105 PRK14955 DNA polymerase III su 97.9 0.00039 8.4E-09 78.5 16.9 171 15-193 38-225 (397)
106 PRK07471 DNA polymerase III su 97.9 0.00078 1.7E-08 74.6 18.8 96 96-197 140-239 (365)
107 PRK14088 dnaA chromosomal repl 97.8 0.00013 2.9E-09 83.1 12.5 156 15-194 130-303 (440)
108 PRK14951 DNA polymerase III su 97.8 0.0016 3.5E-08 76.3 21.4 96 96-193 123-222 (618)
109 PRK06620 hypothetical protein; 97.8 0.0002 4.3E-09 73.3 12.2 132 16-192 45-185 (214)
110 TIGR03689 pup_AAA proteasome A 97.8 0.00037 8.1E-09 79.6 15.5 138 14-166 215-379 (512)
111 PRK14964 DNA polymerase III su 97.8 0.001 2.2E-08 75.8 18.9 95 96-192 115-213 (491)
112 KOG2982 Uncharacterized conser 97.8 7.9E-06 1.7E-10 83.1 1.7 84 398-481 69-157 (418)
113 PRK12422 chromosomal replicati 97.8 0.00046 1E-08 78.5 16.1 151 16-189 142-306 (445)
114 PRK09112 DNA polymerase III su 97.8 0.00039 8.5E-09 76.5 14.3 171 15-197 45-241 (351)
115 PRK14970 DNA polymerase III su 97.8 0.0012 2.6E-08 74.1 18.5 156 15-193 39-206 (367)
116 PRK07994 DNA polymerase III su 97.8 0.0002 4.3E-09 84.0 12.5 169 15-194 38-218 (647)
117 PRK14958 DNA polymerase III su 97.7 0.0011 2.4E-08 76.7 18.4 96 96-193 118-217 (509)
118 TIGR02881 spore_V_K stage V sp 97.7 0.00025 5.4E-09 75.4 12.0 133 14-167 41-193 (261)
119 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.2E-10 57.4 2.8 35 613-647 1-35 (44)
120 TIGR00767 rho transcription te 97.7 6.7E-05 1.4E-09 81.9 7.2 94 16-111 169-269 (415)
121 PF14516 AAA_35: AAA-like doma 97.7 0.006 1.3E-07 67.0 22.7 180 16-202 32-245 (331)
122 PRK07764 DNA polymerase III su 97.7 0.00078 1.7E-08 81.9 17.0 96 95-192 118-217 (824)
123 PRK05896 DNA polymerase III su 97.7 0.0013 2.9E-08 76.2 17.8 172 15-197 38-222 (605)
124 PRK14954 DNA polymerase III su 97.7 0.0013 2.8E-08 77.4 18.0 170 15-191 38-223 (620)
125 PRK14959 DNA polymerase III su 97.7 0.0015 3.2E-08 76.2 18.1 103 95-199 117-224 (624)
126 PRK14969 DNA polymerase III su 97.7 0.0012 2.6E-08 76.9 17.5 94 96-191 118-215 (527)
127 COG1474 CDC6 Cdc6-related prot 97.7 0.0016 3.6E-08 71.9 17.6 216 18-248 45-291 (366)
128 PTZ00454 26S protease regulato 97.7 0.00062 1.4E-08 76.2 14.4 149 14-189 178-350 (398)
129 COG5238 RNA1 Ran GTPase-activa 97.7 3.3E-06 7.1E-11 84.7 -3.3 42 417-458 86-132 (388)
130 PRK07133 DNA polymerase III su 97.7 0.0022 4.7E-08 75.9 19.3 99 96-196 117-220 (725)
131 PF13191 AAA_16: AAA ATPase do 97.7 0.00014 3E-09 72.9 8.4 41 2-42 10-51 (185)
132 COG1373 Predicted ATPase (AAA+ 97.7 0.00047 1E-08 77.5 13.4 120 17-162 39-164 (398)
133 PF05496 RuvB_N: Holliday junc 97.7 0.00049 1.1E-08 69.0 11.9 150 13-195 48-220 (233)
134 PTZ00361 26 proteosome regulat 97.6 0.00019 4.2E-09 80.7 9.8 131 14-167 216-369 (438)
135 PRK14952 DNA polymerase III su 97.6 0.0027 5.9E-08 74.2 19.6 99 96-196 117-220 (584)
136 PRK05707 DNA polymerase III su 97.6 0.00065 1.4E-08 74.1 13.5 94 97-196 106-203 (328)
137 PRK14950 DNA polymerase III su 97.6 0.0017 3.7E-08 77.0 17.9 170 15-195 38-220 (585)
138 PRK09111 DNA polymerase III su 97.6 0.0017 3.7E-08 76.3 17.5 174 15-194 46-231 (598)
139 PRK08451 DNA polymerase III su 97.6 0.005 1.1E-07 71.0 20.7 98 96-195 116-217 (535)
140 PRK14086 dnaA chromosomal repl 97.6 0.00069 1.5E-08 78.5 13.7 154 16-194 315-486 (617)
141 PHA02544 44 clamp loader, smal 97.6 0.00077 1.7E-08 74.0 13.7 135 3-163 32-171 (316)
142 PF00004 AAA: ATPase family as 97.6 0.00056 1.2E-08 64.2 10.9 23 18-40 1-23 (132)
143 PRK14953 DNA polymerase III su 97.6 0.005 1.1E-07 70.9 20.4 97 96-194 118-218 (486)
144 TIGR02880 cbbX_cfxQ probable R 97.6 0.0013 2.9E-08 70.4 14.8 130 17-167 60-210 (284)
145 PRK14948 DNA polymerase III su 97.6 0.0026 5.7E-08 75.3 18.2 169 15-195 38-221 (620)
146 PRK08116 hypothetical protein; 97.6 0.00031 6.7E-09 74.5 9.5 100 16-135 115-221 (268)
147 COG1222 RPT1 ATP-dependent 26S 97.5 0.00091 2E-08 70.7 12.2 147 13-190 183-357 (406)
148 smart00382 AAA ATPases associa 97.5 0.00026 5.6E-09 67.0 7.7 35 16-50 3-37 (148)
149 COG0593 DnaA ATPase involved i 97.5 0.0027 5.9E-08 70.0 16.0 181 15-215 113-313 (408)
150 CHL00176 ftsH cell division pr 97.5 0.0037 8E-08 74.1 18.2 148 15-188 216-386 (638)
151 PRK06305 DNA polymerase III su 97.5 0.0022 4.8E-08 73.3 15.8 99 96-196 120-223 (451)
152 PF12799 LRR_4: Leucine Rich r 97.5 9.2E-05 2E-09 54.3 2.9 40 588-629 1-40 (44)
153 PRK06647 DNA polymerase III su 97.5 0.0064 1.4E-07 71.2 19.7 98 95-194 117-218 (563)
154 CHL00181 cbbX CbbX; Provisiona 97.5 0.0037 8E-08 67.0 16.4 131 16-167 60-211 (287)
155 PF05621 TniB: Bacterial TniB 97.4 0.0043 9.2E-08 65.3 15.5 184 2-194 47-259 (302)
156 KOG4341 F-box protein containi 97.4 1E-05 2.2E-10 86.3 -3.8 230 420-678 187-436 (483)
157 PRK14971 DNA polymerase III su 97.4 0.0077 1.7E-07 71.4 19.6 94 96-191 120-217 (614)
158 KOG3665 ZYG-1-like serine/thre 97.4 4.9E-05 1.1E-09 90.6 1.2 155 470-647 122-286 (699)
159 TIGR01241 FtsH_fam ATP-depende 97.4 0.0022 4.7E-08 74.8 14.7 149 15-189 88-259 (495)
160 KOG0989 Replication factor C, 97.4 0.0033 7.1E-08 65.2 13.7 170 13-198 55-233 (346)
161 TIGR02903 spore_lon_C ATP-depe 97.4 0.0019 4.1E-08 76.8 13.8 110 87-198 282-397 (615)
162 PLN00020 ribulose bisphosphate 97.3 0.0032 6.9E-08 67.8 13.5 151 13-191 146-333 (413)
163 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0016 3.4E-08 74.7 11.7 152 14-189 258-428 (489)
164 COG5238 RNA1 Ran GTPase-activa 97.3 0.00018 3.8E-09 72.6 3.0 184 445-648 29-254 (388)
165 PRK08181 transposase; Validate 97.2 0.0011 2.3E-08 70.0 8.4 35 16-50 107-141 (269)
166 PF04665 Pox_A32: Poxvirus A32 97.2 0.0011 2.4E-08 68.0 7.9 35 17-51 15-49 (241)
167 KOG2543 Origin recognition com 97.2 0.013 2.7E-07 62.8 15.7 157 2-165 16-193 (438)
168 PF05673 DUF815: Protein of un 97.2 0.019 4.1E-07 58.6 16.5 98 15-140 52-156 (249)
169 KOG0730 AAA+-type ATPase [Post 97.2 0.0082 1.8E-07 68.5 15.1 137 9-169 462-619 (693)
170 PRK07399 DNA polymerase III su 97.2 0.017 3.6E-07 62.8 17.2 171 15-196 26-221 (314)
171 PRK09183 transposase/IS protei 97.1 0.0013 2.9E-08 69.4 8.5 36 15-50 102-137 (259)
172 PRK12377 putative replication 97.1 0.0015 3.2E-08 68.0 8.7 36 15-50 101-136 (248)
173 PRK06921 hypothetical protein; 97.1 0.0011 2.3E-08 70.3 7.7 36 15-50 117-153 (266)
174 PRK09361 radB DNA repair and r 97.1 0.0022 4.7E-08 66.6 9.9 49 2-50 10-58 (225)
175 TIGR02639 ClpA ATP-dependent C 97.1 0.0041 8.8E-08 76.0 13.7 129 16-165 204-358 (731)
176 PRK07952 DNA replication prote 97.1 0.001 2.2E-08 69.0 7.2 36 15-50 99-134 (244)
177 KOG0741 AAA+-type ATPase [Post 97.1 0.01 2.2E-07 65.7 14.8 129 13-165 536-686 (744)
178 PRK08769 DNA polymerase III su 97.1 0.044 9.6E-07 59.4 19.3 94 96-197 112-209 (319)
179 PRK06090 DNA polymerase III su 97.1 0.023 5.1E-07 61.4 17.2 91 96-196 107-201 (319)
180 TIGR00602 rad24 checkpoint pro 97.1 0.003 6.4E-08 74.4 11.1 39 2-40 94-135 (637)
181 KOG4579 Leucine-rich repeat (L 97.1 6.4E-05 1.4E-09 68.1 -2.1 61 586-648 75-135 (177)
182 PRK06835 DNA replication prote 97.0 0.0011 2.3E-08 72.3 6.7 35 16-50 184-218 (329)
183 PRK06526 transposase; Provisio 97.0 0.0011 2.3E-08 69.6 6.5 34 15-48 98-131 (254)
184 PRK08058 DNA polymerase III su 97.0 0.012 2.5E-07 64.8 14.6 69 96-164 109-181 (329)
185 PF10443 RNA12: RNA12 protein; 97.0 0.15 3.2E-06 56.5 22.7 102 97-202 148-284 (431)
186 PRK04296 thymidine kinase; Pro 97.0 0.0021 4.6E-08 64.5 8.1 111 16-135 3-116 (190)
187 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0048 1E-07 65.5 11.0 26 17-42 23-48 (262)
188 COG3267 ExeA Type II secretory 97.0 0.037 8.1E-07 56.3 16.4 178 13-198 49-247 (269)
189 KOG1644 U2-associated snRNP A' 97.0 0.0013 2.9E-08 63.9 6.0 106 589-704 43-151 (233)
190 cd01120 RecA-like_NTPases RecA 97.0 0.002 4.2E-08 62.9 7.5 34 17-50 1-34 (165)
191 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0055 1.2E-07 75.5 12.9 129 16-165 209-363 (852)
192 PRK14965 DNA polymerase III su 97.0 0.035 7.6E-07 65.7 19.1 99 96-196 118-221 (576)
193 PRK05563 DNA polymerase III su 97.0 0.025 5.4E-07 66.6 17.7 165 15-192 38-216 (559)
194 KOG3665 ZYG-1-like serine/thre 97.0 0.00035 7.6E-09 83.4 2.3 131 493-648 121-262 (699)
195 PTZ00202 tuzin; Provisional 97.0 0.047 1E-06 60.2 17.9 146 2-164 272-433 (550)
196 cd01394 radB RadB. The archaea 96.9 0.0028 6E-08 65.5 8.3 49 2-50 6-54 (218)
197 PRK08118 topology modulation p 96.9 0.00068 1.5E-08 66.5 3.5 34 16-49 2-38 (167)
198 PRK06871 DNA polymerase III su 96.9 0.026 5.7E-07 61.2 15.9 161 15-193 24-200 (325)
199 TIGR01243 CDC48 AAA family ATP 96.9 0.006 1.3E-07 74.8 12.4 147 15-189 487-656 (733)
200 CHL00095 clpC Clp protease ATP 96.9 0.0098 2.1E-07 73.7 13.7 140 3-164 190-353 (821)
201 PRK04132 replication factor C 96.9 0.026 5.6E-07 68.5 16.7 149 23-193 574-728 (846)
202 PRK07993 DNA polymerase III su 96.8 0.022 4.9E-07 62.3 14.9 92 96-194 107-202 (334)
203 PRK06964 DNA polymerase III su 96.8 0.042 9.1E-07 60.1 16.9 91 96-196 131-225 (342)
204 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0025 5.3E-08 66.8 7.0 93 16-110 70-176 (274)
205 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.011 2.4E-07 56.8 10.7 130 16-150 3-153 (159)
206 KOG1644 U2-associated snRNP A' 96.8 0.0022 4.7E-08 62.5 5.8 55 401-456 43-98 (233)
207 KOG0744 AAA+-type ATPase [Post 96.8 0.0093 2E-07 62.1 10.6 80 15-109 177-262 (423)
208 COG2255 RuvB Holliday junction 96.8 0.014 3E-07 60.1 11.4 149 129-284 156-311 (332)
209 KOG0735 AAA+-type ATPase [Post 96.8 0.018 4E-07 66.0 13.4 159 16-196 432-616 (952)
210 TIGR02237 recomb_radB DNA repa 96.7 0.0033 7.2E-08 64.4 7.2 44 7-50 4-47 (209)
211 TIGR01243 CDC48 AAA family ATP 96.7 0.021 4.5E-07 70.1 15.2 151 14-190 211-381 (733)
212 PF01695 IstB_IS21: IstB-like 96.7 0.0017 3.6E-08 64.4 4.6 36 15-50 47-82 (178)
213 KOG4579 Leucine-rich repeat (L 96.7 0.0001 2.3E-09 66.7 -3.7 78 380-457 55-134 (177)
214 PF13207 AAA_17: AAA domain; P 96.7 0.0014 3E-08 60.6 3.6 23 17-39 1-23 (121)
215 PRK05541 adenylylsulfate kinas 96.7 0.0089 1.9E-07 59.3 9.4 36 15-50 7-42 (176)
216 PF00448 SRP54: SRP54-type pro 96.6 0.0042 9.1E-08 62.5 6.8 36 15-50 1-36 (196)
217 COG2812 DnaX DNA polymerase II 96.6 0.042 9.1E-07 62.8 15.4 93 96-190 118-214 (515)
218 cd01393 recA_like RecA is a b 96.6 0.014 2.9E-07 60.7 10.9 49 2-50 6-60 (226)
219 PF07693 KAP_NTPase: KAP famil 96.6 0.12 2.7E-06 56.8 19.1 41 2-42 6-47 (325)
220 PRK10733 hflB ATP-dependent me 96.6 0.024 5.2E-07 68.1 13.9 129 16-167 186-337 (644)
221 PRK10865 protein disaggregatio 96.6 0.023 5E-07 70.4 13.9 130 16-165 200-354 (857)
222 PRK10536 hypothetical protein; 96.6 0.007 1.5E-07 62.5 7.9 118 16-136 75-214 (262)
223 PRK12608 transcription termina 96.5 0.01 2.2E-07 64.7 9.4 94 16-111 134-234 (380)
224 KOG0731 AAA+-type ATPase conta 96.5 0.034 7.3E-07 65.7 14.1 154 15-193 344-521 (774)
225 KOG2227 Pre-initiation complex 96.5 0.073 1.6E-06 58.7 15.6 158 4-166 162-339 (529)
226 PRK11889 flhF flagellar biosyn 96.5 0.023 5E-07 62.2 11.9 37 14-50 240-276 (436)
227 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0094 2E-07 62.3 8.9 49 2-50 6-60 (235)
228 TIGR03346 chaperone_ClpB ATP-d 96.5 0.039 8.4E-07 68.7 15.6 130 16-165 195-349 (852)
229 PRK07667 uridine kinase; Provi 96.5 0.0052 1.1E-07 61.9 6.3 41 2-42 4-44 (193)
230 PF07728 AAA_5: AAA domain (dy 96.5 0.0037 8E-08 59.3 4.8 22 18-39 2-23 (139)
231 KOG0733 Nuclear AAA ATPase (VC 96.4 0.024 5.2E-07 64.0 11.6 129 15-166 545-693 (802)
232 PRK07261 topology modulation p 96.4 0.011 2.4E-07 58.2 8.3 23 17-39 2-24 (171)
233 PRK11331 5-methylcytosine-spec 96.4 0.0084 1.8E-07 67.0 8.0 35 16-50 195-231 (459)
234 COG1484 DnaC DNA replication p 96.4 0.011 2.3E-07 62.2 8.5 37 14-50 104-140 (254)
235 PRK06762 hypothetical protein; 96.4 0.015 3.3E-07 57.0 9.1 24 16-39 3-26 (166)
236 PF02562 PhoH: PhoH-like prote 96.4 0.0056 1.2E-07 61.4 5.7 111 14-136 18-157 (205)
237 KOG2739 Leucine-rich acidic nu 96.4 0.002 4.4E-08 65.4 2.6 62 584-647 61-127 (260)
238 COG1223 Predicted ATPase (AAA+ 96.3 0.073 1.6E-06 54.0 13.2 149 14-189 150-318 (368)
239 cd03223 ABCD_peroxisomal_ALDP 96.3 0.012 2.6E-07 57.7 7.8 123 16-150 28-161 (166)
240 PHA00729 NTP-binding motif con 96.3 0.018 4E-07 58.5 9.1 27 14-40 16-42 (226)
241 COG0572 Udk Uridine kinase [Nu 96.3 0.0083 1.8E-07 60.2 6.5 31 13-43 6-36 (218)
242 COG1618 Predicted nucleotide k 96.3 0.0047 1E-07 58.0 4.3 39 16-54 6-46 (179)
243 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.012 2.6E-07 56.2 7.2 108 16-149 27-140 (144)
244 PRK08699 DNA polymerase III su 96.3 0.1 2.2E-06 56.9 15.2 86 97-192 113-202 (325)
245 KOG0729 26S proteasome regulat 96.3 0.026 5.6E-07 57.1 9.5 129 10-165 206-361 (435)
246 PRK06067 flagellar accessory p 96.3 0.025 5.5E-07 59.0 10.2 49 2-50 12-60 (234)
247 cd01121 Sms Sms (bacterial rad 96.3 0.021 4.6E-07 63.3 10.0 49 2-50 69-117 (372)
248 PRK08233 hypothetical protein; 96.2 0.015 3.2E-07 58.0 7.8 26 15-40 3-28 (182)
249 PF03215 Rad17: Rad17 cell cyc 96.2 0.024 5.1E-07 65.6 10.3 48 1-50 28-78 (519)
250 cd01131 PilT Pilus retraction 96.2 0.013 2.9E-07 59.2 7.4 109 16-137 2-111 (198)
251 KOG0991 Replication factor C, 96.2 0.034 7.4E-07 55.3 9.7 29 12-40 45-73 (333)
252 COG0464 SpoVK ATPases of the A 96.2 0.028 6E-07 65.8 11.1 133 13-169 274-427 (494)
253 COG0470 HolB ATPase involved i 96.2 0.033 7.1E-07 61.4 11.1 121 15-156 24-172 (325)
254 PRK11034 clpA ATP-dependent Cl 96.2 0.029 6.3E-07 68.0 11.2 130 17-165 209-362 (758)
255 PRK12723 flagellar biosynthesi 96.1 0.045 9.7E-07 60.9 11.8 27 14-40 173-199 (388)
256 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.036 7.7E-07 57.9 10.4 49 2-50 8-56 (237)
257 cd03228 ABCC_MRP_Like The MRP 96.1 0.032 7E-07 55.0 9.3 126 16-150 29-168 (171)
258 PRK08939 primosomal protein Dn 96.1 0.018 3.9E-07 62.3 8.0 36 15-50 156-191 (306)
259 PF00485 PRK: Phosphoribulokin 96.0 0.034 7.4E-07 56.1 9.7 26 17-42 1-26 (194)
260 PF13177 DNA_pol3_delta2: DNA 96.0 0.069 1.5E-06 52.1 11.4 57 96-152 101-161 (162)
261 COG4608 AppF ABC-type oligopep 96.0 0.021 4.5E-07 59.0 7.9 124 15-141 39-176 (268)
262 TIGR00763 lon ATP-dependent pr 96.0 0.06 1.3E-06 66.4 13.4 29 15-43 347-375 (775)
263 KOG0733 Nuclear AAA ATPase (VC 96.0 0.067 1.5E-06 60.6 12.2 130 14-167 222-376 (802)
264 PRK06696 uridine kinase; Valid 96.0 0.01 2.3E-07 61.3 5.7 41 2-42 8-49 (223)
265 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.052 1.1E-06 54.1 10.6 23 17-39 1-23 (183)
266 PRK10865 protein disaggregatio 96.0 0.094 2E-06 65.1 14.8 34 16-49 599-632 (857)
267 TIGR02858 spore_III_AA stage I 96.0 0.033 7.3E-07 58.9 9.3 120 13-139 109-233 (270)
268 TIGR03499 FlhF flagellar biosy 95.9 0.032 6.9E-07 59.8 9.3 37 14-50 193-231 (282)
269 COG0466 Lon ATP-dependent Lon 95.9 0.058 1.3E-06 62.5 11.7 135 15-165 350-508 (782)
270 KOG1947 Leucine rich repeat pr 95.9 0.00059 1.3E-08 79.8 -4.5 35 445-479 187-223 (482)
271 KOG2739 Leucine-rich acidic nu 95.9 0.0044 9.6E-08 63.0 2.4 85 466-552 39-127 (260)
272 COG2607 Predicted ATPase (AAA+ 95.9 0.059 1.3E-06 54.2 10.1 31 15-45 85-115 (287)
273 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.04 8.7E-07 57.3 9.8 49 2-50 7-55 (229)
274 PF13238 AAA_18: AAA domain; P 95.9 0.0064 1.4E-07 56.6 3.3 22 18-39 1-22 (129)
275 TIGR02012 tigrfam_recA protein 95.9 0.026 5.6E-07 60.9 8.2 48 3-50 42-90 (321)
276 PF13671 AAA_33: AAA domain; P 95.9 0.04 8.6E-07 52.4 8.7 24 17-40 1-24 (143)
277 KOG2228 Origin recognition com 95.8 0.049 1.1E-06 57.4 9.6 150 14-165 48-219 (408)
278 PRK00771 signal recognition pa 95.8 0.064 1.4E-06 60.7 11.4 36 14-49 94-129 (437)
279 PF01583 APS_kinase: Adenylyls 95.8 0.012 2.6E-07 56.2 4.8 35 16-50 3-37 (156)
280 PRK04040 adenylate kinase; Pro 95.8 0.013 2.7E-07 58.7 5.1 25 16-40 3-27 (188)
281 TIGR00064 ftsY signal recognit 95.8 0.059 1.3E-06 57.3 10.5 38 13-50 70-107 (272)
282 cd00983 recA RecA is a bacter 95.8 0.028 6.1E-07 60.7 8.0 48 3-50 42-90 (325)
283 TIGR03574 selen_PSTK L-seryl-t 95.8 0.029 6.3E-07 59.1 8.0 26 17-42 1-26 (249)
284 PF10236 DAP3: Mitochondrial r 95.8 0.18 3.8E-06 54.8 14.2 48 146-193 258-306 (309)
285 PRK09354 recA recombinase A; P 95.8 0.032 6.9E-07 60.8 8.3 97 3-107 47-148 (349)
286 KOG1947 Leucine rich repeat pr 95.8 0.0016 3.4E-08 76.1 -1.8 109 420-528 185-305 (482)
287 cd03214 ABC_Iron-Siderophores_ 95.7 0.058 1.3E-06 53.7 9.7 129 16-149 26-171 (180)
288 KOG0728 26S proteasome regulat 95.7 0.15 3.3E-06 51.2 12.2 127 13-166 179-332 (404)
289 PF07726 AAA_3: ATPase family 95.7 0.0069 1.5E-07 55.2 2.7 29 18-46 2-30 (131)
290 PRK04301 radA DNA repair and r 95.7 0.044 9.6E-07 60.0 9.4 48 3-50 90-143 (317)
291 TIGR00708 cobA cob(I)alamin ad 95.7 0.045 9.6E-07 53.3 8.2 132 16-151 6-156 (173)
292 cd03247 ABCC_cytochrome_bd The 95.7 0.067 1.4E-06 53.1 9.9 122 16-150 29-170 (178)
293 cd03246 ABCC_Protease_Secretio 95.7 0.034 7.3E-07 55.0 7.7 127 16-150 29-169 (173)
294 cd03238 ABC_UvrA The excision 95.7 0.042 9E-07 54.3 8.2 126 15-150 21-162 (176)
295 PRK08356 hypothetical protein; 95.7 0.078 1.7E-06 53.5 10.5 21 16-36 6-26 (195)
296 KOG2035 Replication factor C, 95.7 0.3 6.5E-06 50.3 14.1 207 13-234 32-282 (351)
297 cd03115 SRP The signal recogni 95.7 0.1 2.2E-06 51.5 11.0 34 17-50 2-35 (173)
298 cd03216 ABC_Carb_Monos_I This 95.6 0.023 5E-07 55.5 6.3 123 16-149 27-155 (163)
299 KOG1970 Checkpoint RAD17-RFC c 95.6 0.036 7.8E-07 62.1 8.1 40 1-40 91-135 (634)
300 PRK11823 DNA repair protein Ra 95.6 0.057 1.2E-06 61.8 10.0 49 2-50 67-115 (446)
301 PRK05703 flhF flagellar biosyn 95.6 0.12 2.6E-06 58.6 12.5 36 15-50 221-258 (424)
302 PF07724 AAA_2: AAA domain (Cd 95.5 0.019 4.2E-07 56.3 5.3 41 15-56 3-44 (171)
303 PF13604 AAA_30: AAA domain; P 95.5 0.059 1.3E-06 54.4 8.9 109 15-138 18-134 (196)
304 KOG0651 26S proteasome regulat 95.5 0.036 7.7E-07 57.7 7.2 122 14-162 165-313 (388)
305 PRK12726 flagellar biosynthesi 95.5 0.12 2.7E-06 56.5 11.6 37 14-50 205-241 (407)
306 PRK05986 cob(I)alamin adenolsy 95.5 0.055 1.2E-06 53.5 8.2 118 14-135 21-158 (191)
307 cd02027 APSK Adenosine 5'-phos 95.5 0.092 2E-06 50.4 9.8 24 17-40 1-24 (149)
308 PRK10787 DNA-binding ATP-depen 95.5 0.079 1.7E-06 64.8 11.4 136 14-165 348-506 (784)
309 cd02019 NK Nucleoside/nucleoti 95.5 0.02 4.3E-07 46.8 4.4 23 17-39 1-23 (69)
310 COG0542 clpA ATP-binding subun 95.5 0.043 9.3E-07 65.3 8.6 108 15-133 521-642 (786)
311 PRK14974 cell division protein 95.5 0.15 3.4E-06 55.6 12.4 29 14-42 139-167 (336)
312 PRK05800 cobU adenosylcobinami 95.5 0.13 2.8E-06 50.5 10.7 80 17-106 3-85 (170)
313 TIGR02639 ClpA ATP-dependent C 95.4 0.15 3.1E-06 62.6 13.5 26 15-40 484-509 (731)
314 COG1875 NYN ribonuclease and A 95.4 0.045 9.8E-07 58.3 7.7 35 98-135 352-388 (436)
315 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.02 4.4E-07 55.5 5.0 123 16-150 26-154 (157)
316 PRK04328 hypothetical protein; 95.4 0.063 1.4E-06 56.5 9.1 49 2-50 10-58 (249)
317 PF08423 Rad51: Rad51; InterP 95.4 0.029 6.3E-07 59.1 6.4 48 3-50 26-79 (256)
318 PRK05480 uridine/cytidine kina 95.4 0.014 3E-07 59.7 4.0 27 13-39 4-30 (209)
319 COG4088 Predicted nucleotide k 95.4 0.047 1E-06 53.5 7.1 32 16-47 2-33 (261)
320 PRK03839 putative kinase; Prov 95.4 0.012 2.6E-07 58.6 3.4 24 17-40 2-25 (180)
321 PRK14722 flhF flagellar biosyn 95.4 0.11 2.4E-06 57.3 11.0 36 15-50 137-174 (374)
322 cd01130 VirB11-like_ATPase Typ 95.4 0.018 4E-07 57.6 4.5 105 5-116 15-119 (186)
323 cd03232 ABC_PDR_domain2 The pl 95.4 0.073 1.6E-06 53.6 8.9 23 16-38 34-56 (192)
324 TIGR00416 sms DNA repair prote 95.4 0.069 1.5E-06 61.1 9.7 49 2-50 81-129 (454)
325 PRK13695 putative NTPase; Prov 95.3 0.056 1.2E-06 53.5 7.9 33 17-49 2-35 (174)
326 PRK12724 flagellar biosynthesi 95.3 0.13 2.8E-06 57.2 11.3 25 15-39 223-247 (432)
327 PTZ00301 uridine kinase; Provi 95.3 0.015 3.2E-07 59.2 3.7 29 15-43 3-31 (210)
328 TIGR03345 VI_ClpV1 type VI sec 95.3 0.065 1.4E-06 66.3 10.0 28 15-42 596-623 (852)
329 PRK10867 signal recognition pa 95.3 0.16 3.4E-06 57.4 12.2 28 15-42 100-127 (433)
330 COG0468 RecA RecA/RadA recombi 95.3 0.099 2.1E-06 55.2 9.8 47 5-51 50-96 (279)
331 cd03229 ABC_Class3 This class 95.3 0.014 2.9E-07 58.1 3.3 129 16-149 27-174 (178)
332 PTZ00088 adenylate kinase 1; P 95.3 0.082 1.8E-06 54.6 9.1 88 18-116 9-105 (229)
333 cd01129 PulE-GspE PulE/GspE Th 95.3 0.056 1.2E-06 57.2 8.1 89 15-116 80-168 (264)
334 PRK07132 DNA polymerase III su 95.3 0.86 1.9E-05 49.0 17.1 155 15-197 18-186 (299)
335 KOG0743 AAA+-type ATPase [Post 95.3 0.24 5.1E-06 54.8 12.8 152 16-203 236-417 (457)
336 PRK00625 shikimate kinase; Pro 95.3 0.014 3.1E-07 57.4 3.3 24 17-40 2-25 (173)
337 cd03222 ABC_RNaseL_inhibitor T 95.3 0.033 7.1E-07 55.1 5.8 113 16-150 26-146 (177)
338 KOG0734 AAA+-type ATPase conta 95.3 0.075 1.6E-06 59.2 8.9 140 1-167 316-486 (752)
339 COG0003 ArsA Predicted ATPase 95.2 0.026 5.7E-07 60.9 5.5 49 15-67 2-50 (322)
340 KOG0736 Peroxisome assembly fa 95.2 0.26 5.7E-06 57.6 13.5 121 15-158 705-849 (953)
341 cd03230 ABC_DR_subfamily_A Thi 95.2 0.054 1.2E-06 53.5 7.3 126 16-149 27-168 (173)
342 TIGR00235 udk uridine kinase. 95.2 0.02 4.4E-07 58.4 4.4 29 13-41 4-32 (207)
343 TIGR02238 recomb_DMC1 meiotic 95.2 0.07 1.5E-06 57.9 8.6 49 2-50 83-137 (313)
344 cd03233 ABC_PDR_domain1 The pl 95.2 0.1 2.2E-06 53.1 9.4 34 16-49 34-69 (202)
345 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.11 2.3E-06 67.0 11.1 27 14-40 1629-1655(2281)
346 COG1419 FlhF Flagellar GTP-bin 95.2 0.11 2.4E-06 56.9 10.0 36 15-50 203-240 (407)
347 PRK06217 hypothetical protein; 95.2 0.078 1.7E-06 52.9 8.3 24 17-40 3-26 (183)
348 PF00910 RNA_helicase: RNA hel 95.1 0.013 2.7E-07 52.8 2.2 25 18-42 1-25 (107)
349 cd03278 ABC_SMC_barmotin Barmo 95.1 0.18 4E-06 50.9 10.8 21 17-37 24-44 (197)
350 COG5635 Predicted NTPase (NACH 95.0 0.12 2.7E-06 64.1 11.3 194 17-219 224-451 (824)
351 PRK09270 nucleoside triphospha 95.0 0.027 5.9E-07 58.5 4.6 32 12-43 30-61 (229)
352 TIGR01360 aden_kin_iso1 adenyl 95.0 0.02 4.3E-07 57.4 3.5 26 14-39 2-27 (188)
353 TIGR03346 chaperone_ClpB ATP-d 95.0 0.08 1.7E-06 66.0 9.4 35 15-49 595-629 (852)
354 PRK00131 aroK shikimate kinase 95.0 0.019 4.2E-07 56.7 3.4 26 15-40 4-29 (175)
355 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.065 1.4E-06 55.4 7.1 52 88-141 148-205 (254)
356 TIGR02788 VirB11 P-type DNA tr 95.0 0.036 7.9E-07 60.3 5.7 94 14-116 143-237 (308)
357 PRK06547 hypothetical protein; 95.0 0.025 5.3E-07 55.7 4.0 27 13-39 13-39 (172)
358 COG0563 Adk Adenylate kinase a 94.9 0.071 1.5E-06 52.7 7.1 23 17-39 2-24 (178)
359 cd00544 CobU Adenosylcobinamid 94.9 0.2 4.3E-06 49.1 10.1 80 17-106 1-82 (169)
360 COG1136 SalX ABC-type antimicr 94.9 0.11 2.3E-06 52.9 8.4 61 87-150 150-216 (226)
361 PRK13539 cytochrome c biogenes 94.9 0.093 2E-06 53.6 8.3 24 15-38 28-51 (207)
362 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.065 1.4E-06 54.4 7.0 23 16-38 27-49 (200)
363 PF08433 KTI12: Chromatin asso 94.9 0.061 1.3E-06 57.0 6.9 35 16-50 2-36 (270)
364 PRK13947 shikimate kinase; Pro 94.9 0.02 4.4E-07 56.5 3.2 26 17-42 3-28 (171)
365 CHL00095 clpC Clp protease ATP 94.9 0.11 2.4E-06 64.5 10.2 108 16-134 540-661 (821)
366 COG1066 Sms Predicted ATP-depe 94.9 0.14 3.1E-06 55.7 9.6 35 15-50 93-127 (456)
367 TIGR00959 ffh signal recogniti 94.9 0.17 3.7E-06 57.2 10.8 26 15-40 99-124 (428)
368 cd01122 GP4d_helicase GP4d_hel 94.9 0.2 4.4E-06 53.5 11.1 36 15-50 30-66 (271)
369 PLN03187 meiotic recombination 94.8 0.098 2.1E-06 57.2 8.6 48 3-50 114-167 (344)
370 TIGR01069 mutS2 MutS2 family p 94.8 0.026 5.7E-07 68.7 4.6 180 15-217 322-522 (771)
371 KOG1969 DNA replication checkp 94.8 0.081 1.7E-06 61.3 8.1 27 13-39 324-350 (877)
372 COG0396 sufC Cysteine desulfur 94.8 0.066 1.4E-06 53.7 6.5 59 87-147 152-216 (251)
373 cd03240 ABC_Rad50 The catalyti 94.8 0.14 3E-06 52.1 9.2 57 90-150 132-196 (204)
374 KOG0727 26S proteasome regulat 94.8 0.34 7.3E-06 48.9 11.2 129 11-166 185-340 (408)
375 PRK12727 flagellar biosynthesi 94.8 0.086 1.9E-06 60.2 8.0 28 15-42 350-377 (559)
376 PF00437 T2SE: Type II/IV secr 94.8 0.064 1.4E-06 57.3 6.9 114 3-133 115-230 (270)
377 PRK00889 adenylylsulfate kinas 94.7 0.042 9.1E-07 54.4 5.1 35 15-49 4-38 (175)
378 cd02028 UMPK_like Uridine mono 94.7 0.035 7.6E-07 55.1 4.4 26 17-42 1-26 (179)
379 smart00763 AAA_PrkA PrkA AAA d 94.7 0.033 7.1E-07 60.6 4.5 28 13-40 76-103 (361)
380 cd00227 CPT Chloramphenicol (C 94.7 0.027 5.8E-07 55.9 3.5 26 16-41 3-28 (175)
381 KOG2123 Uncharacterized conser 94.7 0.0015 3.2E-08 66.4 -5.4 76 381-457 22-99 (388)
382 PF00158 Sigma54_activat: Sigm 94.7 0.094 2E-06 51.4 7.2 23 16-38 23-45 (168)
383 cd03253 ABCC_ATM1_transporter 94.7 0.17 3.8E-06 52.7 9.8 24 16-39 28-51 (236)
384 TIGR02236 recomb_radA DNA repa 94.7 0.16 3.5E-06 55.5 9.9 48 3-50 83-136 (310)
385 PTZ00035 Rad51 protein; Provis 94.6 0.17 3.8E-06 55.5 10.0 49 2-50 105-159 (337)
386 cd02021 GntK Gluconate kinase 94.6 0.23 5.1E-06 47.6 9.8 23 17-39 1-23 (150)
387 COG1428 Deoxynucleoside kinase 94.6 0.027 5.8E-07 55.8 3.2 26 15-40 4-29 (216)
388 PRK03846 adenylylsulfate kinas 94.6 0.049 1.1E-06 55.1 5.2 38 13-50 22-59 (198)
389 cd03213 ABCG_EPDR ABCG transpo 94.6 0.15 3.3E-06 51.4 8.7 35 15-49 35-70 (194)
390 TIGR01420 pilT_fam pilus retra 94.6 0.14 3.1E-06 56.6 9.2 106 16-134 123-229 (343)
391 COG2019 AdkA Archaeal adenylat 94.5 0.032 6.9E-07 52.8 3.3 25 15-39 4-28 (189)
392 PF00560 LRR_1: Leucine Rich R 94.5 0.0098 2.1E-07 36.3 -0.1 20 614-633 1-20 (22)
393 PF00154 RecA: recA bacterial 94.5 0.14 3.1E-06 55.1 8.7 90 13-111 51-145 (322)
394 COG1120 FepC ABC-type cobalami 94.5 0.1 2.2E-06 54.2 7.3 55 87-142 146-206 (258)
395 TIGR03575 selen_PSTK_euk L-ser 94.5 0.085 1.8E-06 57.5 7.0 23 18-40 2-24 (340)
396 PF03308 ArgK: ArgK protein; 94.5 0.086 1.9E-06 54.3 6.6 39 4-42 18-56 (266)
397 COG0488 Uup ATPase components 94.5 0.2 4.3E-06 58.2 10.4 57 89-151 449-511 (530)
398 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.08 1.7E-06 58.5 6.9 101 14-133 61-166 (362)
399 PF02374 ArsA_ATPase: Anion-tr 94.5 0.04 8.7E-07 59.6 4.5 35 16-50 2-36 (305)
400 PF13306 LRR_5: Leucine rich r 94.5 0.13 2.8E-06 47.7 7.5 51 401-454 13-66 (129)
401 COG3640 CooC CO dehydrogenase 94.5 0.055 1.2E-06 54.4 5.0 37 17-53 2-38 (255)
402 PRK10416 signal recognition pa 94.5 0.11 2.5E-06 56.4 7.9 36 14-49 113-148 (318)
403 cd03237 ABC_RNaseL_inhibitor_d 94.4 0.25 5.5E-06 51.8 10.3 24 16-39 26-49 (246)
404 PRK00279 adk adenylate kinase; 94.4 0.18 4E-06 51.7 9.2 24 17-40 2-25 (215)
405 cd03283 ABC_MutS-like MutS-lik 94.4 0.24 5.2E-06 50.1 9.7 23 16-38 26-48 (199)
406 KOG0735 AAA+-type ATPase [Post 94.4 0.58 1.2E-05 54.4 13.4 148 17-191 703-871 (952)
407 cd03251 ABCC_MsbA MsbA is an e 94.4 0.2 4.4E-06 52.2 9.6 24 16-39 29-52 (234)
408 TIGR02655 circ_KaiC circadian 94.4 0.11 2.4E-06 60.4 8.2 49 2-50 250-298 (484)
409 TIGR01351 adk adenylate kinase 94.4 0.15 3.3E-06 52.1 8.4 22 18-39 2-23 (210)
410 PF14532 Sigma54_activ_2: Sigm 94.3 0.038 8.2E-07 52.3 3.5 25 15-39 21-45 (138)
411 TIGR01287 nifH nitrogenase iro 94.3 0.045 9.7E-07 58.7 4.5 27 16-42 1-27 (275)
412 cd03248 ABCC_TAP TAP, the Tran 94.3 0.27 5.9E-06 50.9 10.2 24 15-38 40-63 (226)
413 TIGR01425 SRP54_euk signal rec 94.3 0.3 6.6E-06 54.9 11.0 36 14-49 99-134 (429)
414 KOG2004 Mitochondrial ATP-depe 94.3 0.1 2.3E-06 60.2 7.4 33 12-44 435-467 (906)
415 KOG0652 26S proteasome regulat 94.3 0.69 1.5E-05 47.0 12.2 141 14-181 204-372 (424)
416 cd01125 repA Hexameric Replica 94.3 0.39 8.5E-06 50.2 11.4 24 17-40 3-26 (239)
417 cd03250 ABCC_MRP_domain1 Domai 94.3 0.36 7.9E-06 49.0 10.9 25 15-39 31-55 (204)
418 COG3854 SpoIIIAA ncharacterize 94.3 0.23 5E-06 49.7 8.7 109 16-134 138-252 (308)
419 KOG3928 Mitochondrial ribosome 94.3 0.48 1E-05 51.6 11.8 54 144-200 403-460 (461)
420 PLN03186 DNA repair protein RA 94.3 0.14 2.9E-06 56.2 8.1 49 2-50 110-164 (342)
421 PRK13543 cytochrome c biogenes 94.3 0.19 4.1E-06 51.6 8.8 23 16-38 38-60 (214)
422 PRK13949 shikimate kinase; Pro 94.3 0.035 7.6E-07 54.5 3.2 24 17-40 3-26 (169)
423 COG2884 FtsE Predicted ATPase 94.3 0.17 3.6E-06 49.3 7.5 53 88-142 146-204 (223)
424 cd02025 PanK Pantothenate kina 94.3 0.031 6.7E-07 57.5 2.9 24 17-40 1-24 (220)
425 PRK09435 membrane ATPase/prote 94.3 0.29 6.3E-06 53.3 10.5 31 12-42 53-83 (332)
426 PRK09580 sufC cysteine desulfu 94.3 0.17 3.7E-06 53.2 8.7 24 16-39 28-51 (248)
427 PF00406 ADK: Adenylate kinase 94.3 0.11 2.3E-06 50.0 6.5 88 20-117 1-94 (151)
428 cd02024 NRK1 Nicotinamide ribo 94.2 0.03 6.4E-07 55.7 2.6 23 17-39 1-23 (187)
429 PF13306 LRR_5: Leucine rich r 94.2 0.12 2.7E-06 47.9 6.8 119 419-543 8-128 (129)
430 cd00071 GMPK Guanosine monopho 94.2 0.03 6.4E-07 52.9 2.5 27 17-43 1-27 (137)
431 cd02023 UMPK Uridine monophosp 94.2 0.032 6.9E-07 56.5 2.9 23 17-39 1-23 (198)
432 PRK10751 molybdopterin-guanine 94.2 0.083 1.8E-06 51.6 5.6 30 13-42 4-33 (173)
433 TIGR02782 TrbB_P P-type conjug 94.2 0.13 2.8E-06 55.6 7.6 88 16-116 133-223 (299)
434 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.2 0.25 5.4E-06 51.6 9.7 25 15-39 29-53 (238)
435 PRK13946 shikimate kinase; Pro 94.2 0.034 7.5E-07 55.5 3.0 25 16-40 11-35 (184)
436 cd03254 ABCC_Glucan_exporter_l 94.2 0.26 5.6E-06 51.2 9.8 24 16-39 30-53 (229)
437 cd03244 ABCC_MRP_domain2 Domai 94.2 0.27 5.9E-06 50.7 9.9 23 16-38 31-53 (221)
438 TIGR00455 apsK adenylylsulfate 94.2 0.33 7.2E-06 48.4 10.1 28 14-41 17-44 (184)
439 PRK13657 cyclic beta-1,2-gluca 94.1 0.16 3.5E-06 60.9 9.2 24 16-39 362-385 (588)
440 PF03205 MobB: Molybdopterin g 94.1 0.07 1.5E-06 50.5 4.8 35 16-50 1-36 (140)
441 PRK14526 adenylate kinase; Pro 94.1 0.22 4.9E-06 50.7 8.8 89 18-117 3-98 (211)
442 cd02020 CMPK Cytidine monophos 94.1 0.037 8E-07 52.9 3.0 24 17-40 1-24 (147)
443 KOG1514 Origin recognition com 94.1 0.91 2E-05 52.9 14.3 155 3-167 407-591 (767)
444 TIGR02322 phosphon_PhnN phosph 94.1 0.039 8.5E-07 54.8 3.2 25 16-40 2-26 (179)
445 cd03215 ABC_Carb_Monos_II This 94.1 0.29 6.4E-06 48.7 9.5 34 16-50 27-60 (182)
446 PRK13948 shikimate kinase; Pro 94.1 0.037 8E-07 54.9 2.9 27 14-40 9-35 (182)
447 TIGR01313 therm_gnt_kin carboh 94.1 0.3 6.5E-06 47.6 9.4 22 18-39 1-22 (163)
448 PRK14528 adenylate kinase; Pro 94.1 0.26 5.7E-06 49.3 9.1 24 16-39 2-25 (186)
449 PF00625 Guanylate_kin: Guanyl 94.1 0.044 9.5E-07 54.7 3.5 35 15-49 2-36 (183)
450 COG0703 AroK Shikimate kinase 94.1 0.042 9E-07 53.1 3.1 28 16-43 3-30 (172)
451 COG0467 RAD55 RecA-superfamily 94.1 0.084 1.8E-06 56.1 5.8 47 4-50 12-58 (260)
452 cd00464 SK Shikimate kinase (S 94.0 0.042 9E-07 53.0 3.2 23 18-40 2-24 (154)
453 PRK13768 GTPase; Provisional 94.0 0.07 1.5E-06 56.2 5.1 34 16-49 3-36 (253)
454 PRK14531 adenylate kinase; Pro 94.0 0.29 6.3E-06 48.8 9.3 24 16-39 3-26 (183)
455 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.51 1.1E-05 48.1 11.3 24 16-39 35-58 (207)
456 PRK14529 adenylate kinase; Pro 94.0 0.24 5.2E-06 50.7 8.7 89 18-115 3-95 (223)
457 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.26 5.7E-06 50.4 9.0 23 15-37 29-51 (213)
458 PRK01184 hypothetical protein; 94.0 0.18 4E-06 50.3 7.8 22 16-38 2-23 (184)
459 TIGR02239 recomb_RAD51 DNA rep 93.9 0.22 4.7E-06 54.3 8.7 49 2-50 83-137 (316)
460 PRK13230 nitrogenase reductase 93.9 0.072 1.6E-06 57.2 5.0 34 16-49 2-35 (279)
461 PRK11174 cysteine/glutathione 93.9 0.18 3.8E-06 60.6 8.8 33 16-50 377-409 (588)
462 PRK09280 F0F1 ATP synthase sub 93.9 0.16 3.4E-06 57.5 7.6 93 16-110 145-251 (463)
463 PF12775 AAA_7: P-loop contain 93.9 0.046 9.9E-07 58.1 3.3 24 16-39 34-57 (272)
464 cd02117 NifH_like This family 93.8 0.069 1.5E-06 54.7 4.5 26 16-41 1-26 (212)
465 cd02029 PRK_like Phosphoribulo 93.8 0.23 5E-06 51.8 8.2 33 17-49 1-33 (277)
466 KOG0927 Predicted transporter 93.8 0.066 1.4E-06 60.0 4.5 24 15-38 101-124 (614)
467 PRK05057 aroK shikimate kinase 93.8 0.047 1E-06 53.8 3.1 26 15-40 4-29 (172)
468 COG1102 Cmk Cytidylate kinase 93.8 0.049 1.1E-06 51.4 2.9 25 17-41 2-26 (179)
469 PRK13975 thymidylate kinase; P 93.8 0.055 1.2E-06 54.7 3.7 26 16-41 3-28 (196)
470 COG0488 Uup ATPase components 93.8 0.18 3.8E-06 58.6 8.1 57 89-151 163-225 (530)
471 PRK00409 recombination and DNA 93.8 0.05 1.1E-06 66.5 3.8 187 14-217 326-527 (782)
472 PF13481 AAA_25: AAA domain; P 93.7 0.066 1.4E-06 53.9 4.1 25 16-40 33-57 (193)
473 PLN02459 probable adenylate ki 93.7 0.31 6.8E-06 50.9 9.1 89 18-117 32-129 (261)
474 COG3910 Predicted ATPase [Gene 93.7 0.81 1.8E-05 44.5 10.9 62 87-150 137-202 (233)
475 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6E-07 34.3 0.8 19 520-538 2-20 (22)
476 TIGR02902 spore_lonB ATP-depen 93.7 0.27 5.8E-06 57.8 9.5 24 16-39 87-110 (531)
477 TIGR00150 HI0065_YjeE ATPase, 93.7 0.065 1.4E-06 49.8 3.6 26 15-40 22-47 (133)
478 COG1703 ArgK Putative periplas 93.7 0.12 2.6E-06 53.9 5.8 47 3-49 39-85 (323)
479 cd03289 ABCC_CFTR2 The CFTR su 93.7 0.41 8.9E-06 51.1 10.2 33 16-50 31-63 (275)
480 PRK11034 clpA ATP-dependent Cl 93.7 0.24 5.2E-06 60.2 9.3 26 15-40 488-513 (758)
481 cd01983 Fer4_NifH The Fer4_Nif 93.7 0.081 1.8E-06 46.1 4.1 25 17-41 1-25 (99)
482 TIGR00176 mobB molybdopterin-g 93.6 0.082 1.8E-06 51.0 4.3 26 17-42 1-26 (155)
483 COG1936 Predicted nucleotide k 93.6 0.05 1.1E-06 52.1 2.6 20 17-36 2-21 (180)
484 PF13245 AAA_19: Part of AAA d 93.6 0.14 3E-06 42.7 5.0 24 16-39 11-35 (76)
485 PF03266 NTPase_1: NTPase; In 93.5 0.057 1.2E-06 52.9 3.1 24 18-41 2-25 (168)
486 PRK10463 hydrogenase nickel in 93.5 0.13 2.7E-06 54.6 5.8 36 13-48 102-137 (290)
487 cd02034 CooC The accessory pro 93.5 0.11 2.3E-06 47.4 4.7 32 18-49 2-33 (116)
488 PRK14493 putative bifunctional 93.5 0.093 2E-06 55.7 4.9 34 16-50 2-35 (274)
489 cd00046 DEXDc DEAD-like helica 93.5 0.2 4.2E-06 46.8 6.8 34 17-50 2-37 (144)
490 PRK14738 gmk guanylate kinase; 93.5 0.055 1.2E-06 55.2 3.0 31 8-38 6-36 (206)
491 KOG0730 AAA+-type ATPase [Post 93.5 0.41 8.9E-06 55.2 10.1 150 13-189 216-385 (693)
492 COG4618 ArpD ABC-type protease 93.5 0.15 3.3E-06 56.9 6.5 22 16-37 363-384 (580)
493 PLN02318 phosphoribulokinase/u 93.5 0.084 1.8E-06 60.8 4.7 34 6-39 56-89 (656)
494 PRK15453 phosphoribulokinase; 93.5 0.11 2.3E-06 54.6 5.2 29 13-41 3-31 (290)
495 KOG0739 AAA+-type ATPase [Post 93.5 1.5 3.3E-05 45.7 13.1 149 15-189 166-334 (439)
496 COG2401 ABC-type ATPase fused 93.5 0.23 5E-06 53.9 7.6 56 87-147 515-580 (593)
497 COG1124 DppF ABC-type dipeptid 93.5 0.066 1.4E-06 54.2 3.4 22 16-37 34-55 (252)
498 PRK05439 pantothenate kinase; 93.5 0.1 2.2E-06 56.2 5.0 29 13-41 84-112 (311)
499 cd03243 ABC_MutS_homologs The 93.4 0.076 1.7E-06 54.0 4.0 22 16-37 30-51 (202)
500 PRK14530 adenylate kinase; Pro 93.4 0.059 1.3E-06 55.4 3.2 23 17-39 5-27 (215)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.7e-98 Score=938.73 Aligned_cols=818 Identities=31% Similarity=0.521 Sum_probs=655.9
Q ss_pred ChHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEec--hh---hhcc------CChHHHHHHHH
Q 002458 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--RE---VSVT------RGLVPLQEQLL 69 (919)
Q Consensus 1 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~---~s~~------~~l~~l~~~ll 69 (919)
+++|.++|..+.+++++||||||||+||||||+++|+++..+|++.+|+.+. +. .... .....++++++
T Consensus 193 l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l 272 (1153)
T PLN03210 193 IAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFL 272 (1153)
T ss_pred HHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHH
Confidence 3678888888888999999999999999999999999999999999998642 11 1110 11345677888
Q ss_pred HHHhcccCccccchhhhHHHHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEc
Q 002458 70 SEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
.+++...+..... ...++++++++|+||||||||+.++|+.+.+...|+++|||||||||+++++..++++++|+|
T Consensus 273 ~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 273 SEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 8776655443322 356788999999999999999999999999988999999999999999999988888899999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHHHHhcCCChhHHHHHHh
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPNEKVLKVLRI 229 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~ 229 (919)
+.++++||++||+++||++..+++++.+++++|+++|+|+||||+++|++|++++.++|+++++++++..+.+|..+|++
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~ 428 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRV 428 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999999888999999999
Q ss_pred hhccCCh-hhHHHhhhhccccCCCCHHHHHHHHhhcCCCchhhHHHHhhcCCeEEeCCEEeehHHHHHHhHhhhhccCCC
Q 002458 230 SYDGLDR-RDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIVREHHSD 308 (919)
Q Consensus 230 sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~~~~mHdli~~~~~~i~~~e~~~ 308 (919)
||++|++ .+|.||+++||||.+.+.+.+..++..+++.++.+++.|++++||++..+++.|||++|+||++++++++ .
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~ 507 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-N 507 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-C
Confidence 9999986 5899999999999999999999999999999999999999999999998999999999999999999998 7
Q ss_pred CCCCeeeccCchhHHHHHhcCcCCCcEEEEEeeCC--CccccChhhhcCCCCCcEEEecCc----------ccCCCcccc
Q 002458 309 KPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVP--EMTELEAKSFSTMSNLRLLEINNL----------YSSGNLEYL 376 (919)
Q Consensus 309 ~p~~~~rl~~~~d~~~vl~~~~~~~~v~~l~l~~~--~~~~~~~~~f~~l~~L~~L~l~~~----------~l~~~~~~~ 376 (919)
+|++|+|+|.++|+++++.+++|++.+++|.++.+ ....+...+|.+|++|+.|.+..+ ++++.+...
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 89999999999999999999999999999999987 456688899999999999999654 244556667
Q ss_pred CCCcceEEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCc
Q 002458 377 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (919)
Q Consensus 377 ~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~ 456 (919)
+.+|+.|+|.+++++.+|..|.+.+|++|+|++|+++.+|.++..+++|+.|+|++|..+..+|+++.+++|++|+|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 78999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred cccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCcc
Q 002458 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (919)
Q Consensus 457 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~ 536 (919)
..+..+|.+++++++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.. .++|+.|++++|.++.+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc
Confidence 9999999999999999999999999999999877 8999999999999988888864 45789999999999988875
Q ss_pred ccCCCCCcEE-------------------------------EeCCCCCCCCCCCcchhhcccccCC-CCCCCccccCCCC
Q 002458 537 IVQLVNLKIF-------------------------------SLHGCKGQPPKILSSNFFLSLLLPN-KNSDSMCLSFPRF 584 (919)
Q Consensus 537 l~~l~~L~~L-------------------------------~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l 584 (919)
+ .+++|+.| ++++|......+.+...+..+..+. .++... ..+|..
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L-~~LP~~ 821 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL-ETLPTG 821 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc-CeeCCC
Confidence 4 34444444 4444432222222222222221111 111111 223443
Q ss_pred CCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCCCCC---CcccE
Q 002458 585 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP---PEIVF 661 (919)
Q Consensus 585 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp---~~L~~ 661 (919)
.++++|+.|+|++|..+. .+|. ...+|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 822 INLESLESLDLSGCSRLR-TFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCccccCEEECCCCCccc-cccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 356666666666665332 2333 2357889999999999999999999999999999999999988654 56778
Q ss_pred eeccCCCccceeccccccc------------CCCCceeEecccccchhhhhhhhHHHHHHHHHHhhcCCCCCCceEEecC
Q 002458 662 VGAEDCTSLETISAFAKLS------------RSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLP 729 (919)
Q Consensus 662 L~~~~c~~L~~l~~~~n~~------------~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~l~ 729 (919)
+++++|++|+.+++..... ........|.+|.+|..--+ . ........+.+|
T Consensus 898 L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~-------------l---~~~~~~~~~~l~ 961 (1153)
T PLN03210 898 VDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL-------------L---QQQSIFKQLILS 961 (1153)
T ss_pred eecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-------------h---cccccceEEECC
Confidence 8999999999876643210 11123456788888742111 0 111224467899
Q ss_pred CCCCCCccccccCCceEE-EEcCC---CCCeeeEEEEEEEecCCCCC-CcccceEEEEEeCCCcceeeEeeCCCccccCC
Q 002458 730 GNEIPRWFRFRNIGGSVT-MTAPR---LDNFIGFAVCAVLSLPRCMD-RFYSEIQCKLLWGEDDYKFSVAIPSFTTLESD 804 (919)
Q Consensus 730 g~~iP~wf~~~~~g~sv~-~~lp~---~~~~~g~~~c~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (919)
|.++|+||.||+.|++++ |.+|+ ...|.||++|+|+++..... .....+.|.|.+.+..- ... ....++
T Consensus 962 g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~-----~~~~~~ 1035 (1153)
T PLN03210 962 GEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG-NHF-----DSPYQP 1035 (1153)
T ss_pred CccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCC-Ccc-----ccCCCc
Confidence 999999999999999998 99987 45799999999998766432 22346677777765210 000 011355
Q ss_pred cEEEEEeCccchh----------h---hhcCCCceEEEEEEEecccCCccEEEEeeEEEEEeccc
Q 002458 805 HLWLAYLPRETFK----------T---QCFRGLTKASFNIFYMGEEFRNASVKMCGVVSLYMEVE 856 (919)
Q Consensus 805 h~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~vk~cGv~l~~~~~e 856 (919)
|+|+.|....++. + ....++++++++|.++... ..++||+|||+++|+++.
T Consensus 1036 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1036 HVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKN-SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred eeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCC-CCeEEEeeeEEEeccCCC
Confidence 5555554432211 1 1122456677888665422 347999999999996643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-58 Score=546.17 Aligned_cols=517 Identities=26% Similarity=0.338 Sum_probs=365.1
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHH---HhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc-
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL- 78 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~- 78 (919)
++...|.. ++.++|||+||||+||||||+.++|+ ++.+|+.++|+. +|+......++++++..+......
T Consensus 169 kl~~~L~~--d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~~ 242 (889)
T KOG4658|consen 169 KLWNRLME--DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEEW 242 (889)
T ss_pred HHHHHhcc--CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCccc
Confidence 34444444 33499999999999999999999993 689999999999 777889999999999985442222
Q ss_pred cccchhhhHHHHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-hCCCceEEcCCCCHHHH
Q 002458 79 IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVRGLDYVEA 157 (919)
Q Consensus 79 ~~~~~~~~~~~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~-~~~~~~~~v~~L~~~ea 157 (919)
...+.++....+.+.|.+||++|||||||+..+|+.+...++....||+|++|||++.|+.. ++++..++++.|+.+||
T Consensus 243 ~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ea 322 (889)
T KOG4658|consen 243 EDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEA 322 (889)
T ss_pred chhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcccc
Confidence 11223677889999999999999999999999999999999877889999999999999998 78888999999999999
Q ss_pred HHHHHHHhcCC-CCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCC-CHHHHHHHHHHHhcC-----C--ChhHHHHHH
Q 002458 158 LQLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR-SVEEWKSALNRLQEA-----P--NEKVLKVLR 228 (919)
Q Consensus 158 ~~Lf~~~a~~~-~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-~~~~w~~~l~~l~~~-----~--~~~i~~~l~ 228 (919)
|+||++.|+.. ....+..++++++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... + ...+..+++
T Consensus 323 W~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLk 402 (889)
T KOG4658|consen 323 WDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILK 402 (889)
T ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhh
Confidence 99999999876 34445589999999999999999999999999985 677999999988664 1 356889999
Q ss_pred hhhccCChhhHHHhhhhccccCCCC--HHHHHHHHhhcCCCc------------hhhHHHHhhcCCeEEeC-----CEEe
Q 002458 229 ISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNS------------DIGIRELLDKSLITIVN-----NKLW 289 (919)
Q Consensus 229 ~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~------------~~~l~~L~~~sLi~~~~-----~~~~ 289 (919)
.|||.||++.|.||+|||.||+++. .+.+...|.++||.. ..++++|++++|+...+ ..+.
T Consensus 403 lSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~k 482 (889)
T KOG4658|consen 403 LSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVK 482 (889)
T ss_pred ccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEE
Confidence 9999999889999999999999995 578999999999763 34699999999999875 6799
Q ss_pred ehHHHHHHhHhhhhccCCCCCCCeeeccCchhHHHHHhcCcCCCcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcc-
Q 002458 290 MHDLLQEMGWEIVREHHSDKPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLY- 368 (919)
Q Consensus 290 mHdli~~~~~~i~~~e~~~~p~~~~rl~~~~d~~~vl~~~~~~~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~- 368 (919)
|||++||||.+++.+...........- .....+ ..+......++++++..+....+... ..+++|++|-+.+|.
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~--~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSD--GVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSD 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEEC--CcCccc-cccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecch
Confidence 999999999999984322111100000 000000 11112223344444433322222111 112244444444442
Q ss_pred -cC---CCccccCCCcceEEee-CCCCCCCCCCC-CCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCC
Q 002458 369 -SS---GNLEYLSNNLRYLKWH-EYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDF 442 (919)
Q Consensus 369 -l~---~~~~~~~~~L~~L~~~-~~~~~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 442 (919)
+. ..+...++.|+.|+++ +.++..+|..+ .+-+|++|+|+++.|+++|.++++|++|.+||+.++..+..+|.+
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch
Confidence 11 1112223344444444 33456777776 477888999999999999999999999999999988777777764
Q ss_pred -CCCCccceeeccCcc--ccccccccccCccccceecccccccccccCccccCCCCCc----EEEecCcCCCCcCccccc
Q 002458 443 -TGVPNLERLNLEGCT--RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK----ILCLCGCLKLEKLPQDLG 515 (919)
Q Consensus 443 -~~l~~L~~L~L~~~~--~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~----~L~Ls~~~~~~~lp~~l~ 515 (919)
..+++|++|.+..-. .....-..+.++.+|+.+....... .+-..+..++.|. .+.+.+| .....+..++
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~ 714 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLG 714 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccc
Confidence 448899998887633 1111112334455555555533221 1111122233333 2222222 2233445567
Q ss_pred CCCCCcEeecCCCccccc
Q 002458 516 EVECLEELDVGGTAIRQI 533 (919)
Q Consensus 516 ~l~~L~~L~L~~n~i~~l 533 (919)
.+.+|+.|.+.++.+.+.
T Consensus 715 ~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEI 732 (889)
T ss_pred cccCcceEEEEcCCCchh
Confidence 777888888877777643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-37 Score=336.19 Aligned_cols=265 Identities=32% Similarity=0.494 Sum_probs=211.2
Q ss_pred ChHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHH--HhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccC-
Q 002458 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD- 77 (919)
Q Consensus 1 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~- 77 (919)
+++|.+.|....+++++|+|+||||+||||||++++++ ++.+|+.++|+.. +.......++++++..+.....
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccccccc
Confidence 36788888886688999999999999999999999987 8999999999983 4445558888888888554422
Q ss_pred c-cccchhhhHHHHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCC-CceEEcCCCCHH
Q 002458 78 L-IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGV-TNTYKVRGLDYV 155 (919)
Q Consensus 78 ~-~~~~~~~~~~~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~-~~~~~v~~L~~~ 155 (919)
. ...+..+....+++.|+++++|||||||++..+|+.+...++.++.|++||||||++.++..... ...|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 34567778899999999999999999999999999988877777789999999999988876654 679999999999
Q ss_pred HHHHHHHHHhcCCC-CCChhHHHHHHHHHHHhCCchhHHHHHHhhccC-CCHHHHHHHHHHHhcCC------ChhHHHHH
Q 002458 156 EALQLFHLKVSNGK-QPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEAP------NEKVLKVL 227 (919)
Q Consensus 156 ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~-~~~~~w~~~l~~l~~~~------~~~i~~~l 227 (919)
||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+..++++.... ...+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997655 334445678999999999999999999999955 36788999998776543 47799999
Q ss_pred HhhhccCChhhHHHhhhhccccCCCC--HHHHHHHHhhcCCCch
Q 002458 228 RISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSD 269 (919)
Q Consensus 228 ~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~ 269 (919)
..||+.|+++.|.||+++|+||.+.. .+.++++|.++|++..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999975 7889999999988653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-33 Score=349.51 Aligned_cols=419 Identities=19% Similarity=0.194 Sum_probs=308.6
Q ss_pred CCCCCeeeccCchhHHHHHhcCc--CCCcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCccc----cCCCcc
Q 002458 308 DKPGKWSRLWLYKDVYHVLSKYM--GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY----LSNNLR 381 (919)
Q Consensus 308 ~~p~~~~rl~~~~d~~~vl~~~~--~~~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~----~~~~L~ 381 (919)
.+|.++.+.|...+.+-.....+ ....|+.+.+..+......+.+|..+++|+.|++++|++.+.+|. .+.+|+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 34566666775433221111122 245788898888776666788999999999999999999876663 456899
Q ss_pred eEEeeCCCCCCCCCCCCCCCcEEEEccCCCCc-cccccccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCcccc
Q 002458 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 459 (919)
Q Consensus 382 ~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~ 459 (919)
+|++.++.+........+.+|++|+|++|.+. .+|..++.+++|++|+|++|.+....|. +.++++|++|+|++|.+.
T Consensus 122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 99998888764333345789999999999997 6788899999999999999988877775 899999999999999999
Q ss_pred ccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCccc-ccCcccc
Q 002458 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIV 538 (919)
Q Consensus 460 ~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~ 538 (919)
+.+|..++++++|++|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|+.|++++|.++ .+|.++.
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 6888999
Q ss_pred CCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCe
Q 002458 539 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 617 (919)
Q Consensus 539 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~ 617 (919)
.+++|+.|++++|......+.....+..+..+....+......|. +..+++|+.|+|++|+ +.+.+|..++.+++|+.
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTV 360 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcE
Confidence 999999999999985433332222222222211111122122333 7778888888888888 45678888888888888
Q ss_pred eeCCCCCCc-cCcHhhhccCCCcEEecCcCccCCcCCCC---CCcccEeeccC-------------CCccceeccccccc
Q 002458 618 IDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPEL---PPEIVFVGAED-------------CTSLETISAFAKLS 680 (919)
Q Consensus 618 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~l---p~~L~~L~~~~-------------c~~L~~l~~~~n~~ 680 (919)
|+|++|+++ .+|.++..+++|+.|++++|+....+|.. .++|+.|++++ +++|+.++++.| .
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~ 439 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-N 439 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-c
Confidence 888888887 67878888888888888888766665531 13444444433 345555555555 3
Q ss_pred CCCCceeEecccccchhhhhhhhHHHHHHHHHHhhcCCCCCCceEEecCCCCC
Q 002458 681 RSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLPGNEI 733 (919)
Q Consensus 681 ~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~l~g~~i 733 (919)
..+..+..+..+++|+.|++++|++.+.+|... ....+..+.+.+|.+
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-----~~~~L~~L~ls~n~l 487 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-----GSKRLENLDLSRNQF 487 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCccc-----ccccceEEECcCCcc
Confidence 334444445566667777777776665554311 224456666766643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.7e-31 Score=338.01 Aligned_cols=377 Identities=19% Similarity=0.207 Sum_probs=247.7
Q ss_pred CCcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCcccc---CCCcceEEeeCCCCC-CCCCCC-CCCCcEEEE
Q 002458 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFN-SLPVSF-RPEKLFKLN 406 (919)
Q Consensus 332 ~~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~~---~~~L~~L~~~~~~~~-~lp~~~-~~~~L~~L~ 406 (919)
...++.+.+..+......+..|.++++|+.|++++|.+.+.+|.. +.+|++|++.++.+. .+|..+ .+.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 345666666666555556677888888888888888877766654 345666666666654 345554 667888888
Q ss_pred ccCCCCc-cccccccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCccccccccccccCccccceeccccccccc
Q 002458 407 LCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (919)
Q Consensus 407 L~~n~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~ 484 (919)
|++|.+. .+|..+..+++|++|++++|.+....|. ++++++|++|++++|.+.+.+|.+++++++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 8888877 5677788888888888888877766664 7788888888888888777888888888888888888888777
Q ss_pred ccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCccc-ccCccccCCCCCcEEEeCCCCCCCCCCCcchh
Q 002458 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNF 563 (919)
Q Consensus 485 ~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 563 (919)
.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.....
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 78877778888888888888887778888888888888888888877 67777888888888888887743322222222
Q ss_pred hcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCc-cCcHhhhccCCCcEE
Q 002458 564 FLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKIL 641 (919)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 641 (919)
...+..+....+......|. +..+++|+.|+|++|+ +++.+|..+..+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 11111111111111112232 5666777777777777 44566667777777777777777776 455556666677777
Q ss_pred ecCcCccCCcCCCCC--CcccEeeccC-------------CCccceecccccccCCCCceeEecccccchhhhhhhhHHH
Q 002458 642 CLEKCRNLKSLPELP--PEIVFVGAED-------------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (919)
Q Consensus 642 ~L~~~~~l~~lp~lp--~~L~~L~~~~-------------c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~ 706 (919)
++++|+..+.+|... ++|+.|++++ +++|+.|+++.| ...+..+..+.+|++|+.|++++|+++
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCccc
Confidence 777666655555322 3444444433 234455555444 333334444555555555555555555
Q ss_pred HHHH
Q 002458 707 VTLM 710 (919)
Q Consensus 707 ~~~~ 710 (919)
+.+|
T Consensus 537 ~~~p 540 (968)
T PLN00113 537 GQIP 540 (968)
T ss_pred ccCC
Confidence 4444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=5.1e-28 Score=259.45 Aligned_cols=397 Identities=19% Similarity=0.135 Sum_probs=226.1
Q ss_pred CcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCcc--ccCCCcceEEeeCCCCCCCCCCC--CCCCcEEEEcc
Q 002458 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLC 408 (919)
Q Consensus 333 ~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~--~~~~~L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~ 408 (919)
..++.+.+..+...++....|.++++|+.+++.+|.++..+. ...++++.|.+.++-+.++.+.- .++.|+.|||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 445667777778888999999999999999999998876443 33456788888777776665443 45678888888
Q ss_pred CCCCcccccc-ccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCccccccccccccCccccceeccccccccccc
Q 002458 409 NSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 486 (919)
Q Consensus 409 ~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~l 486 (919)
.|.|..+|.. +..-.++++|+|++|.+.+.-.+ |.++.+|..|.|++|.+...-+.+|.+|++|+.|+|..|.+--.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 8888877743 55557788888888877766554 777778888888887766555566777888888888877643332
Q ss_pred CccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCc-cccCCCCCcEEEeCCCCCCCCCCCcchhhc
Q 002458 487 PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFFL 565 (919)
Q Consensus 487 p~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 565 (919)
-..|..|++|+.|.|..|.+...--..|..|.++++|+|+.|+++.+.. ++.+|+.|+.|+++.|........+...-.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 3346677777777777766655445556677777777777777776553 566777777777777764321111110000
Q ss_pred cc--ccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCc-cCc---HhhhccCCCc
Q 002458 566 SL--LLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLP---SSINQLLKLK 639 (919)
Q Consensus 566 ~l--~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp---~~l~~l~~L~ 639 (919)
++ +.+..|.... ..-.+|..++.|++|+|++|++ +-.-...|.++++|+.|||++|.++ .+. ..+..|++|+
T Consensus 318 kL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 318 KLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cceeEecccccccc-CChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 00 0000000000 1111244444455555555542 2112223444555555555555444 111 1234455555
Q ss_pred EEecCcCccCCcCCCCCCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHHHHHHHHHHhhcCCC
Q 002458 640 ILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPN 719 (919)
Q Consensus 640 ~L~L~~~~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~~~~~ 719 (919)
.|.+.+|+ +++||. =.+++.++||.|++.+| .+....+..|..+ .|++|-++.-.+.-.-.-.|++.+-.
T Consensus 396 kL~l~gNq-lk~I~k-------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 396 KLRLTGNQ-LKSIPK-------RAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred heeecCce-eeecch-------hhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 55555544 333332 02345566666666555 3334444455555 55555544332221111122222222
Q ss_pred CCCceEEecCCCCCCCcccccc
Q 002458 720 CSSQFHIFLPGNEIPRWFRFRN 741 (919)
Q Consensus 720 ~~~~~~~~l~g~~iP~wf~~~~ 741 (919)
...+..........|+|+..|.
T Consensus 466 ~~~lq~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 466 RRKLQSSVIAKCAYPEPLADQS 487 (873)
T ss_pred hcccccceeeeccCCcccccce
Confidence 2223333344456778877664
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.2e-28 Score=261.93 Aligned_cols=334 Identities=19% Similarity=0.249 Sum_probs=254.7
Q ss_pred cEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCcc--ccCCCcceEEeeCCCCCC--CCCC-CCCCCcEEEEcc
Q 002458 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNS--LPVS-FRPEKLFKLNLC 408 (919)
Q Consensus 334 ~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~--~~~~~L~~L~~~~~~~~~--lp~~-~~~~~L~~L~L~ 408 (919)
.++-+.++......+ ++.++.+.+|..|.+++|++..... ..++.||.+...++.++. +|.+ |.+..|+.|||+
T Consensus 33 ~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred heeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 345555544433333 4567777788888888877664332 224467777777776553 6655 588899999999
Q ss_pred CCCCccccccccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCccccccccccccCccccceecccccccccccC
Q 002458 409 NSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFP 487 (919)
Q Consensus 409 ~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp 487 (919)
+|++++.|.++..-+++-+|+||+|++.+.+.. |.+++.|-.|||++|. +..+|+.+..|..|++|.|++|.+.----
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 999999999998899999999999977665544 7788899999999854 77888899999999999999988643222
Q ss_pred ccccCCCCCcEEEecCcCC-CCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcc
Q 002458 488 KNVCLMKSLKILCLCGCLK-LEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLS 566 (919)
Q Consensus 488 ~~i~~l~~L~~L~Ls~~~~-~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 566 (919)
..+..+++|++|.+++... +..+|.++..+.+|..+|++.|.+..+|..+-++++|+.|+|++|......
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--------- 261 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN--------- 261 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee---------
Confidence 2344678888898888554 356888999999999999999999999999999999999999998854310
Q ss_pred cccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCc--cCcHhhhccCCCcEEecC
Q 002458 567 LLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLE 644 (919)
Q Consensus 567 l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~ 644 (919)
-......+|++|+||.|.+. .+|..++.++.|+.|.+.+|+++ .+|++|+.|.+|+.+...
T Consensus 262 ---------------~~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 262 ---------------MTEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred ---------------ccHHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 01334568899999999964 48999999999999999999777 899999999999999988
Q ss_pred cCccCCcCCCCCCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHHH
Q 002458 645 KCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (919)
Q Consensus 645 ~~~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~ 706 (919)
+|. ++-+|+ .+..|..|+.|.++.|..++ .|..+.-++.|..||+..|.-.
T Consensus 325 nN~-LElVPE--------glcRC~kL~kL~L~~NrLiT--LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 325 NNK-LELVPE--------GLCRCVKLQKLKLDHNRLIT--LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccc-cccCch--------hhhhhHHHHHhcccccceee--chhhhhhcCCcceeeccCCcCc
Confidence 876 566665 55778888888888774443 4555666788888888888544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4.6e-28 Score=260.76 Aligned_cols=315 Identities=20% Similarity=0.288 Sum_probs=254.9
Q ss_pred CCCcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccC--CCcccc--CCCcceEEeeCCCCCCCCCCC-CCCCcEEE
Q 002458 331 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSS--GNLEYL--SNNLRYLKWHEYPFNSLPVSF-RPEKLFKL 405 (919)
Q Consensus 331 ~~~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~--~~~~~~--~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L 405 (919)
...+++++++..+....+. ..++.++.||.+++..|++. |.++.. +..|+.|+++++.++..|... ..+++.+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3456777777776655544 45778899999999888765 333333 357888888888888888877 77899999
Q ss_pred EccCCCCcccccc-ccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceeccccccc-c
Q 002458 406 NLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN-L 483 (919)
Q Consensus 406 ~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~-~ 483 (919)
+|++|+|..+|.. +.+|..|-.||||+|++...+|....+.+|++|.|++|.....--..+-.|++|++|.+++.+. +
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9999999999976 6678999999999999888888899999999999999876544444555678888999987543 3
Q ss_pred cccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchh
Q 002458 484 VSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNF 563 (919)
Q Consensus 484 ~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 563 (919)
..+|.++..+.+|..+++|.|+ +..+|+.+.++.+|+.|+|++|.|+++........+|++|+++.|...
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt--------- 281 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT--------- 281 (1255)
T ss_pred hcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc---------
Confidence 5688889999999999999865 457899999999999999999999999888888999999999998853
Q ss_pred hcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEe
Q 002458 564 FLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILC 642 (919)
Q Consensus 564 ~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 642 (919)
.+|. +..++.|+.|.+.+|++.-+.+|+.++.+.+|+.+..++|++.-+|.++..|.+|+.|.
T Consensus 282 ----------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 282 ----------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred ----------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence 2454 77889999999999997667899999999999999999999999999999999999999
Q ss_pred cCcCccCCcCCC---CCCcccEeeccCCCcccee
Q 002458 643 LEKCRNLKSLPE---LPPEIVFVGAEDCTSLETI 673 (919)
Q Consensus 643 L~~~~~l~~lp~---lp~~L~~L~~~~c~~L~~l 673 (919)
|++|+.++ +|+ +-+.|+.|++++.++|..=
T Consensus 346 L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 346 LDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccccceee-chhhhhhcCCcceeeccCCcCccCC
Confidence 99988554 664 2256666666666665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-25 Score=241.31 Aligned_cols=393 Identities=17% Similarity=0.132 Sum_probs=265.6
Q ss_pred CccccChhhhcCC--CCCcEEEecCcccCCCcc---ccCCCcceEEeeCCCCCCCCCCCC-CCCcEEEEccCCCCcccc-
Q 002458 344 EMTELEAKSFSTM--SNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSLPVSFR-PEKLFKLNLCNSRIKYLW- 416 (919)
Q Consensus 344 ~~~~~~~~~f~~l--~~L~~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~lp~~~~-~~~L~~L~L~~n~i~~l~- 416 (919)
+...++...+... +.-++|++++|.+...-+ ..+.+|+.+.+..+.+..+|.... ..+|+.|+|.+|.|.++.
T Consensus 63 ~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 63 ELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred ccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccH
Confidence 4444444455543 345669999999987544 345688888889999999998774 456999999999999886
Q ss_pred ccccCCCCCcEEecCCCCCCCcC-CCCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCC
Q 002458 417 KGIKPLKELKFMNLSHSCNLIRT-PDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKS 495 (919)
Q Consensus 417 ~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~ 495 (919)
+.++.++.|+.||||.|.+.... |.|..-.++++|+|++|.+...-...|.++.+|..|.|++|++....+..|.+|++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 45888999999999999776543 45888899999999999988777788999999999999999977666677878999
Q ss_pred CcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCcc-ccCCCCCcEEEeCCCCCCCCCCCcchhhccc--ccCCC
Q 002458 496 LKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSL--LLPNK 572 (919)
Q Consensus 496 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l--~~~~~ 572 (919)
|+.|+|..|.+...---.|.++++|+.|.|..|.|..+.++ |..+.++++|+|..|+...........+..+ +.+..
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 99999999876443244688999999999999999988764 5779999999999998543222222222222 11111
Q ss_pred CCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcH-hhhccCCCcEEecCcCccCCc
Q 002458 573 NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKS 651 (919)
Q Consensus 573 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~ 651 (919)
|.... ......+..++|++|+|++|++ +..-+..|..++.|++|+|+.|.++.+.. .+..+++|+.|||++|.....
T Consensus 303 NaI~r-ih~d~WsftqkL~~LdLs~N~i-~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 303 NAIQR-IHIDSWSFTQKLKELDLSSNRI-TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred hhhhe-eecchhhhcccceeEecccccc-ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 11111 2223344556666666666663 32334455666666666666666665544 345666666666666665444
Q ss_pred CCCCCCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHHHHHHHHHHhhcCCCCCCceEEecCCC
Q 002458 652 LPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLPGN 731 (919)
Q Consensus 652 lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~~~~~~~~~~~~~l~g~ 731 (919)
|.+-. --+.++++|+.|.+.+| .+.....-.|..++.|+.||+.+|.|.+.-|. .+... .+..+.+...
T Consensus 381 IEDaa-----~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n----AFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 381 IEDAA-----VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPN----AFEPM-ELKELVMNSS 449 (873)
T ss_pred Eecch-----hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeeccc----ccccc-hhhhhhhccc
Confidence 43211 01345778888888777 44444555688888888888888877643332 11111 2222222222
Q ss_pred ---------CCCCccccccCCceEEEE
Q 002458 732 ---------EIPRWFRFRNIGGSVTMT 749 (919)
Q Consensus 732 ---------~iP~wf~~~~~g~sv~~~ 749 (919)
=++.|+-.+...++++..
T Consensus 450 sflCDCql~Wl~qWl~~~~lq~sv~a~ 476 (873)
T KOG4194|consen 450 SFLCDCQLKWLAQWLYRRKLQSSVIAK 476 (873)
T ss_pred ceEEeccHHHHHHHHHhcccccceeee
Confidence 246777777766777665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=6e-26 Score=233.94 Aligned_cols=299 Identities=24% Similarity=0.329 Sum_probs=176.9
Q ss_pred hhhcCCCCCcEEEecCcccCCCcccc--CCCcceEEeeCCCCCCCCCCC-CCCCcEEEEccCCCCccccccccCCCCCcE
Q 002458 351 KSFSTMSNLRLLEINNLYSSGNLEYL--SNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKF 427 (919)
Q Consensus 351 ~~f~~l~~L~~L~l~~~~l~~~~~~~--~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 427 (919)
.+++++..++.|+.+.|.++..++.. ..+++.|+.+.+.+..+|.++ .+..|..|+..+|++.++|+++..+.+|..
T Consensus 85 ~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 85 AAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence 45566666666666666665544433 224555666666666666555 555666666666666666666666666666
Q ss_pred EecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceeccccccc---------------------cccc
Q 002458 428 MNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN---------------------LVSF 486 (919)
Q Consensus 428 L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~---------------------~~~l 486 (919)
+++.+|+....+|+.-+++.|++||... +.++.+|+.++.|.+|..|+|..|++ +..+
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh
Confidence 6666655555555433355555555555 23555555555555555555555442 3334
Q ss_pred Ccccc-CCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCC--CCcch-
Q 002458 487 PKNVC-LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPK--ILSSN- 562 (919)
Q Consensus 487 p~~i~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~~~~- 562 (919)
|...+ .+++|.+|||..| .+++.|+.+..+.+|+.||+++|.|+.+|.+++++ +|+.|-+.||...... ..+..
T Consensus 244 pae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred HHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 44333 6778888888885 45678888888888888888888888888888888 8888888888722110 00000
Q ss_pred --hhccc--cc---CCCCCCCc--------cccCCCCCCCCCCc--------------------------EEecCCCCCC
Q 002458 563 --FFLSL--LL---PNKNSDSM--------CLSFPRFTGLSSLQ--------------------------TLDLSDCNLL 601 (919)
Q Consensus 563 --~~~~l--~~---~~~~~~~~--------~~~~~~l~~l~~L~--------------------------~L~Ls~n~l~ 601 (919)
-+..+ .. ..+..... ...+|....+.+.+ ..+++.|++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence 00000 00 00000000 01111111222233 3344444321
Q ss_pred C----------------------CCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCCCCC
Q 002458 602 E----------------------GAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP 656 (919)
Q Consensus 602 ~----------------------~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp 656 (919)
+ +.+|..++.+++|..|+|++|-+..+|..++.+..|+.|++++|+ ++.+|
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr----Fr~lP 474 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR----FRMLP 474 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc----cccch
Confidence 1 345556677889999999999999999999999999999999985 45544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5.9e-25 Score=226.69 Aligned_cols=350 Identities=24% Similarity=0.331 Sum_probs=257.6
Q ss_pred EEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCccccC--CCcceEEeeCCCCCCCCCCC-CCCCcEEEEccCCC
Q 002458 335 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSR 411 (919)
Q Consensus 335 v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~~~--~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~n~ 411 (919)
...+....++...++ ..++.+..|..|+..+|+++..++... .++..|.+.++.++.+|... .++.|++||...|-
T Consensus 116 l~~l~~s~n~~~el~-~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 116 LVKLDCSSNELKELP-DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhhhhccccceeecC-chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh
Confidence 334444444555554 456778888899999998877665543 35667777888888887764 78899999999999
Q ss_pred CccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCcccccccccccc-CccccceecccccccccccCccc
Q 002458 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVG-TLKRLILLNLKDCRNLVSFPKNV 490 (919)
Q Consensus 412 i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~n~~~~~lp~~i 490 (919)
++.+|+.++.+.+|..|+|.+|++. ..|.|.++..|.+|++..|. +..+|.... ++++|.+|||.+|+ +...|..+
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~ 271 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI 271 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHH
Confidence 9999999999999999999999654 55699999999999999865 667776665 89999999999987 78899999
Q ss_pred cCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCC------CCCc--------------------
Q 002458 491 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQL------VNLK-------------------- 544 (919)
Q Consensus 491 ~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l------~~L~-------------------- 544 (919)
+.+++|++||+|+|.+ +.+|..++++ .|+.|-+.||.+..+-..+-+. +.|+
T Consensus 272 clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 9999999999999775 4688899999 8999999999988654433221 1111
Q ss_pred ----------------EEEeCCCCCCC-CC--------------CCcchhhc-------------ccccCCCCCCCcccc
Q 002458 545 ----------------IFSLHGCKGQP-PK--------------ILSSNFFL-------------SLLLPNKNSDSMCLS 580 (919)
Q Consensus 545 ----------------~L~L~~~~~~~-~~--------------~~~~~~~~-------------~l~~~~~~~~~~~~~ 580 (919)
.|++++-.... |. .++...+. .......+. .+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~----is 425 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK----IS 425 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc----cc
Confidence 11111111000 00 00000000 000111111 22
Q ss_pred CCC--CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCCCCCCc
Q 002458 581 FPR--FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPE 658 (919)
Q Consensus 581 ~~~--l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~ 658 (919)
++. ++.+++|..|+|++|-+- .+|..++.+..|+.|+++.|.|..+|.++..+..|+.+-.++|+ +..++++
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq----i~~vd~~ 499 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ----IGSVDPS 499 (565)
T ss_pred cchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc----ccccChH
Confidence 222 667899999999999753 59999999999999999999999999999888888888777776 3334433
Q ss_pred ccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHHH
Q 002458 659 IVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (919)
Q Consensus 659 L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~ 706 (919)
.+.++.+|++|++.+| .+ ..+|..++||.+|+.|++.+|.+.
T Consensus 500 ----~l~nm~nL~tLDL~nN-dl-q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 ----GLKNMRNLTTLDLQNN-DL-QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ----HhhhhhhcceeccCCC-ch-hhCChhhccccceeEEEecCCccC
Confidence 3567889999999877 22 236667999999999999999887
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.1e-20 Score=239.70 Aligned_cols=282 Identities=24% Similarity=0.358 Sum_probs=213.7
Q ss_pred cCCCcceEEeeCCCC-------CCCCCCC--CCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCC
Q 002458 376 LSNNLRYLKWHEYPF-------NSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVP 446 (919)
Q Consensus 376 ~~~~L~~L~~~~~~~-------~~lp~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~ 446 (919)
.+.+|+.|.+..... -.+|..+ .+.+|+.|++.++.++.+|..+ ...+|+.|++++|.+......+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 366888888765432 1356655 3568999999999999999887 57999999999998766555688999
Q ss_pred ccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecC
Q 002458 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 526 (919)
Q Consensus 447 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~ 526 (919)
+|+.|+|++|..++.+| .++.+++|++|+|++|..+..+|..+.++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999998888887 48899999999999999999999999999999999999999999999876 78999999999
Q ss_pred CCc-ccccCccccCCCCCcEEEeCCCCCCC-CCCCcchhhcccccCCCCCCCc---cccCCC--CCCCCCCcEEecCCCC
Q 002458 527 GTA-IRQIPPSIVQLVNLKIFSLHGCKGQP-PKILSSNFFLSLLLPNKNSDSM---CLSFPR--FTGLSSLQTLDLSDCN 599 (919)
Q Consensus 527 ~n~-i~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~---~~~~~~--l~~l~~L~~L~Ls~n~ 599 (919)
+|. +..+|.. .++|+.|++++|.... |.......+..+.+........ ...++. ...+++|+.|+|++|.
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 984 4456542 5689999999988432 1111111111111111000000 001111 2235789999999997
Q ss_pred CCCCCCCcccCCCCCCCeeeCCCC-CCccCcHhhhccCCCcEEecCcCccCCcCCCCCCcccEeecc
Q 002458 600 LLEGAIPSDIGSLFSLEAIDLSGN-NFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAE 665 (919)
Q Consensus 600 l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~ 665 (919)
.. ..+|..++++++|+.|+|++| ++..+|..+ ++++|+.|+|++|..++.+|.++.+++.|+++
T Consensus 790 ~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 790 SL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred Cc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence 43 468999999999999999987 577888776 78999999999999988888776666666554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-22 Score=228.73 Aligned_cols=364 Identities=22% Similarity=0.156 Sum_probs=222.9
Q ss_pred ccccChhhhcCCCCCcEEEecCcccCCCcc--ccCCCcceEEeeCCCCCCCCCCC-CCCCcEEEEccCCCCccccccccC
Q 002458 345 MTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKP 421 (919)
Q Consensus 345 ~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~--~~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~ 421 (919)
....+.++.++.-+|+.|++++|++...+. .....|+.|.++.+.+.+.|... .+.+|++|.|.+|.+..+|.++..
T Consensus 33 ~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~ 112 (1081)
T KOG0618|consen 33 LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISE 112 (1081)
T ss_pred cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHh
Confidence 333344555556669999999998864332 23457888888888899998665 788999999999999999999999
Q ss_pred CCCCcEEecCCCCCCCcCCCCCCCCcccee-------------------eccCccccccccccccCccccceeccccccc
Q 002458 422 LKELKFMNLSHSCNLIRTPDFTGVPNLERL-------------------NLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (919)
Q Consensus 422 l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L-------------------~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 482 (919)
+++|++|++|+|.+...++-+..++.++.+ ++..|...+.++..+.+++. .|+|++|.+
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 999999999999887666555444444444 44444455555566666665 577877765
Q ss_pred ccccCccc-----------------cCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcE
Q 002458 483 LVSFPKNV-----------------CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKI 545 (919)
Q Consensus 483 ~~~lp~~i-----------------~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 545 (919)
....-..+ -.-++|+.|+.++|.+....+. .--.+|+.++++.|.++.+|+++..+.+|+.
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceE
Confidence 41110101 0123444444445444422211 1123455555555555555555555555555
Q ss_pred EEeCCCCCCCCCCCcchhhccc-------------------------ccCCCCCCC----------------------cc
Q 002458 546 FSLHGCKGQPPKILSSNFFLSL-------------------------LLPNKNSDS----------------------MC 578 (919)
Q Consensus 546 L~L~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~~~~----------------------~~ 578 (919)
+....|... ..+.......++ +.+..+... ..
T Consensus 269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 555555421 111111100000 000000000 00
Q ss_pred ccCCCCC--CCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcH-hhhccCCCcEEecCcCccCCcCCCC
Q 002458 579 LSFPRFT--GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPEL 655 (919)
Q Consensus 579 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~l 655 (919)
..+|..+ .++.|+.|.+.+|.+.+ ..-..+.++.+|+.|+|++|.+.++|+ .+.++..|+.|+|++|+ ++.+|+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~- 424 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD- 424 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH-
Confidence 1111111 23446666666666433 333346778889999999999998887 45888889999999987 444554
Q ss_pred CCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHHH-HHHHHHHhhcCCCC-CCceEEecCCCC
Q 002458 656 PPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA-VTLMKQWLLEVPNC-SSQFHIFLPGNE 732 (919)
Q Consensus 656 p~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l~-~~~~~~~~~~~~~~-~~~~~~~l~g~~ 732 (919)
.+.+|..|++|..-+|... ..| .+.++++|+.+|+|.|++. ..+|. ..+ ..+..+++.||.
T Consensus 425 -------tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~~~~l~~------~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 425 -------TVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLSEVTLPE------ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -------HHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccchhhhhhhhh------hCCCcccceeeccCCc
Confidence 4567888888887766322 244 6888899999999999887 23332 222 677788888885
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2e-18 Score=203.26 Aligned_cols=258 Identities=20% Similarity=0.201 Sum_probs=132.8
Q ss_pred EEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccc
Q 002458 383 LKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEV 462 (919)
Q Consensus 383 L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 462 (919)
|++.++.++.+|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|++.. +|.+ .++|++|++++|.+ ..+
T Consensus 206 LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls~N~L-~~L 277 (788)
T PRK15387 206 LNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL--PPGLLELSIFSNPL-THL 277 (788)
T ss_pred EEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc--ccccceeeccCCch-hhh
Confidence 3333334444444332 2455555555555555432 3455555555554332 2321 34555555555542 233
Q ss_pred cccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCC
Q 002458 463 HQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN 542 (919)
Q Consensus 463 p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~ 542 (919)
|.. ..+|+.|++++|.+ ..+|. .+++|+.|++++|.+.+ +|... .+|+.|++++|.++.+|.. ..+
T Consensus 278 p~l---p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~ 343 (788)
T PRK15387 278 PAL---PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL---PSG 343 (788)
T ss_pred hhc---hhhcCEEECcCCcc-ccccc---cccccceeECCCCcccc-CCCCc---ccccccccccCcccccccc---ccc
Confidence 332 23455566666543 33443 23556666666654433 33321 2355666666666666542 245
Q ss_pred CcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCC
Q 002458 543 LKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSG 622 (919)
Q Consensus 543 L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~ 622 (919)
|+.|+|++|.... +|.+ .++|+.|++++|.+. .+|.. .++|+.|+|++
T Consensus 344 Lq~LdLS~N~Ls~-------------------------LP~l--p~~L~~L~Ls~N~L~--~LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 344 LQELSVSDNQLAS-------------------------LPTL--PSELYKLWAYNNRLT--SLPAL---PSGLKELIVSG 391 (788)
T ss_pred cceEecCCCccCC-------------------------CCCC--Ccccceehhhccccc--cCccc---ccccceEEecC
Confidence 6666666665321 1211 235666666666643 25542 24567777777
Q ss_pred CCCccCcHhhhccCCCcEEecCcCccCCcCCCCCCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhh
Q 002458 623 NNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSK 702 (919)
Q Consensus 623 n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~ 702 (919)
|+|+.+|.. .++|+.|++++|+ +..+|.+|..|+ .|++++|. +. .+|..+.++++|+.+++++
T Consensus 392 N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~-----------~L~Ls~Nq-Lt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 392 NRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLL-----------SLSVYRNQ-LT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred CcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhh-----------hhhhccCc-cc-ccChHHhhccCCCeEECCC
Confidence 777766642 2467777777765 344555443333 33333331 11 2344466777888888888
Q ss_pred hHHHHHHHH
Q 002458 703 DNLAVTLMK 711 (919)
Q Consensus 703 N~l~~~~~~ 711 (919)
|++++..+.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 888776665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=7.1e-18 Score=198.55 Aligned_cols=256 Identities=21% Similarity=0.175 Sum_probs=194.3
Q ss_pred EEeeCCCccccChhhhcCCCCCcEEEecCcccCCCccccCCCcceEEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccc
Q 002458 338 IIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK 417 (919)
Q Consensus 338 l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~ 417 (919)
+.+..+....+++. +. ++|+.|++.+|+++. +|..+.+|++|++.+|.++.+|.. +++|+.|++++|.++.+|.
T Consensus 206 LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 206 LNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPA 279 (788)
T ss_pred EEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhh
Confidence 44555555555543 32 479999999999886 556778999999999999999864 4689999999999998886
Q ss_pred cccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCc
Q 002458 418 GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (919)
Q Consensus 418 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 497 (919)
. ..+|+.|++++|++.. +|. ..++|+.|++++|.+. .+|... .+|+.|++++|.+ +.+|. ...+|+
T Consensus 280 l---p~~L~~L~Ls~N~Lt~-LP~--~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L-~~LP~---lp~~Lq 345 (788)
T PRK15387 280 L---PSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQL-TSLPT---LPSGLQ 345 (788)
T ss_pred c---hhhcCEEECcCCcccc-ccc--cccccceeECCCCccc-cCCCCc---ccccccccccCcc-ccccc---cccccc
Confidence 3 3678899999997654 443 2578999999998654 455432 4577888998875 45664 235899
Q ss_pred EEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCc
Q 002458 498 ILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM 577 (919)
Q Consensus 498 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 577 (919)
.|+|++|.+. .+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|....
T Consensus 346 ~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~---------------------- 396 (788)
T PRK15387 346 ELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS---------------------- 396 (788)
T ss_pred eEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC----------------------
Confidence 9999998765 46653 34688899999999988864 3578999999887432
Q ss_pred cccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcC
Q 002458 578 CLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSL 652 (919)
Q Consensus 578 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~l 652 (919)
+|.. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++.+|.++.++++|+.|+|++|+.....
T Consensus 397 ---LP~l--~s~L~~LdLS~N~Ls--sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 397 ---LPVL--PSELKELMVSGNRLT--SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ---CCCc--ccCCCEEEccCCcCC--CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 2221 357999999999954 37753 35788999999999999999999999999999999865443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.2e-18 Score=206.73 Aligned_cols=244 Identities=18% Similarity=0.224 Sum_probs=144.0
Q ss_pred CCcEEEecCcccCCCccccCCCcceEEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCC
Q 002458 358 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI 437 (919)
Q Consensus 358 ~L~~L~l~~~~l~~~~~~~~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~ 437 (919)
+...|+++++.++..+...+..++.|++.+|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE 255 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc
Confidence 45566676666665544455667777777777776666543 467777777777777665443 367777777775543
Q ss_pred cCCCCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCC
Q 002458 438 RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEV 517 (919)
Q Consensus 438 ~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l 517 (919)
.+..+. .+|+.|++++|.+. .+|..+. ++|++|++++|++. .+|..+ .++|+.|++++|.+. .+|..+.
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l~-- 324 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLT-ALPETLP-- 324 (754)
T ss_pred CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCccc-cCCcccc--
Confidence 322232 35677777665433 4555443 36777777776533 345433 235666777766554 3444332
Q ss_pred CCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCC
Q 002458 518 ECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSD 597 (919)
Q Consensus 518 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 597 (919)
++|+.|++++|.++.+|..+. ++|+.|++++|.... +|. .-.++|+.|+|++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~-------------------------LP~-~lp~~L~~LdLs~ 376 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV-------------------------LPE-TLPPTITTLDVSR 376 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCCc-------------------------CCh-hhcCCcCEEECCC
Confidence 467777777777776666543 567777777665321 111 0024677777777
Q ss_pred CCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhh----ccCCCcEEecCcCc
Q 002458 598 CNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSIN----QLLKLKILCLEKCR 647 (919)
Q Consensus 598 n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~----~l~~L~~L~L~~~~ 647 (919)
|++. .+|..+. .+|+.|++++|+++.+|.++. .++++..|+|.+|+
T Consensus 377 N~Lt--~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 377 NALT--NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcCC--CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7743 3555443 357777777777776665443 34667777777776
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-20 Score=213.56 Aligned_cols=346 Identities=21% Similarity=0.249 Sum_probs=216.2
Q ss_pred EEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCcccc--CCCcceEEeeCCCCCCCCCCC-CCCCcEEEEccCCC
Q 002458 335 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL--SNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSR 411 (919)
Q Consensus 335 v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~~--~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~~n~ 411 (919)
++.+.+..+.... -+..+..+.+|+.|+++.|.+....... ..+|++|.+.++.+..+|..+ .+.+|+.|+++.|.
T Consensus 47 L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeecccccccc-CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 4444444443333 3456777889999999998876654332 457889999999999999887 78899999999999
Q ss_pred CccccccccCCCCCcEEecCCC-------------------CCCCcCCCCCCCCccce-eeccCccccccccccccCc--
Q 002458 412 IKYLWKGIKPLKELKFMNLSHS-------------------CNLIRTPDFTGVPNLER-LNLEGCTRLLEVHQSVGTL-- 469 (919)
Q Consensus 412 i~~l~~~~~~l~~L~~L~Ls~n-------------------~~~~~~~~~~~l~~L~~-L~L~~~~~~~~~p~~l~~l-- 469 (919)
+...|..+..+..+..+..++| .+...++ ....+|++ |+|..|... .+ .+.++
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~--~~i~~l~~~ldLr~N~~~-~~--dls~~~~ 200 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL--IDIYNLTHQLDLRYNEME-VL--DLSNLAN 200 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh--cchhhhheeeecccchhh-hh--hhhhccc
Confidence 9988877666666666666655 2221111 11122333 555555433 11 11111
Q ss_pred ----------------------------------------cccceecccccccccccCccccCCCCCcEEEecCcCCCCc
Q 002458 470 ----------------------------------------KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK 509 (919)
Q Consensus 470 ----------------------------------------~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~ 509 (919)
.+|++++++.|+ ...+|+.++.+.+|+.|+..+|.+ ..
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~ 278 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VA 278 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh-hhcchHHHHhcccceEecccchhH-Hh
Confidence 234444444433 233445555555555555555444 44
Q ss_pred CcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCC--cchhh-----------------------
Q 002458 510 LPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKIL--SSNFF----------------------- 564 (919)
Q Consensus 510 lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~----------------------- 564 (919)
+|..+..+++|+.|.+..|.++.+|+....++.|++|+|..|....-... .....
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~ 358 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH 358 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence 45555555555555566666666777777788999999988873221111 00000
Q ss_pred --cccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCc-ccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEE
Q 002458 565 --LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKIL 641 (919)
Q Consensus 565 --~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 641 (919)
+..+.+..|. -....+|.+.++.+|+.|+|++|++- .+|. .+.++..|+.|+||||+++.+|..+..++.|++|
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCc-ccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 0001112222 22256788999999999999999953 3665 5678999999999999999999999999999999
Q ss_pred ecCcCccCCcCCCCC--CcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhH
Q 002458 642 CLEKCRNLKSLPELP--PEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (919)
Q Consensus 642 ~L~~~~~l~~lp~lp--~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~ 704 (919)
...+|+ +.++|++. +.|+.+|++ |..|..+.+... . .-++|+.||+++|.
T Consensus 436 ~ahsN~-l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~----------~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQ-LLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA----------L-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCc-eeechhhhhcCcceEEecc-cchhhhhhhhhh----------C-CCcccceeeccCCc
Confidence 999887 44567543 455555553 334433333221 1 11788888888885
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.1e-17 Score=198.29 Aligned_cols=249 Identities=19% Similarity=0.262 Sum_probs=176.5
Q ss_pred CCCcceEEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCc
Q 002458 377 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (919)
Q Consensus 377 ~~~L~~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~ 456 (919)
..+...|++.++.++.+|..+ +++|+.|+|++|+++.+|..+. .+|+.|++++|.+...+..+ .++|+.|+|++|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSIN 251 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCC
Confidence 346678999999999999876 4589999999999999997664 58999999999765433223 347999999998
Q ss_pred cccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCcc
Q 002458 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (919)
Q Consensus 457 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~ 536 (919)
.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|..
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcc
Confidence 754 7777664 57999999987654 6777653 58999999998655 4565443 4688899999998888865
Q ss_pred ccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCC
Q 002458 537 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (919)
Q Consensus 537 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~ 616 (919)
+. ++|+.|++++|.... +|. .-.++|+.|+|++|++. .+|..+ .++|+
T Consensus 323 l~--~sL~~L~Ls~N~Lt~-------------------------LP~-~l~~sL~~L~Ls~N~L~--~LP~~l--p~~L~ 370 (754)
T PRK15370 323 LP--PGLKTLEAGENALTS-------------------------LPA-SLPPELQVLDVSKNQIT--VLPETL--PPTIT 370 (754)
T ss_pred cc--ccceeccccCCcccc-------------------------CCh-hhcCcccEEECCCCCCC--cCChhh--cCCcC
Confidence 53 688888888876321 111 01257888889888854 366655 36888
Q ss_pred eeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCCCCCCcccEeeccCCCccceeccccc
Q 002458 617 AIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (919)
Q Consensus 617 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n 678 (919)
.|+|++|+++.+|..+.. .|+.|++++|+. ..+|+ ++..+ ...++.+..+.+..|
T Consensus 371 ~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L-~~LP~---sl~~~-~~~~~~l~~L~L~~N 425 (754)
T PRK15370 371 TLDVSRNALTNLPENLPA--ALQIMQASRNNL-VRLPE---SLPHF-RGEGPQPTRIIVEYN 425 (754)
T ss_pred EEECCCCcCCCCCHhHHH--HHHHHhhccCCc-ccCch---hHHHH-hhcCCCccEEEeeCC
Confidence 889988888888877643 688888888763 34443 22111 123455555555544
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-17 Score=172.94 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=96.7
Q ss_pred CcEEEEEeeCCCccccChhhhcCCCCCcEEEecCcccCCCccccCCCcceE---Ee-eCCCCCCCCCCC--CCCCcEEEE
Q 002458 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYL---KW-HEYPFNSLPVSF--RPEKLFKLN 406 (919)
Q Consensus 333 ~~v~~l~l~~~~~~~~~~~~f~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L---~~-~~~~~~~lp~~~--~~~~L~~L~ 406 (919)
+....|.++.+.+..+++.+|+.+++||.|+|++|.|+..-|..+..|+.| .+ .++.++++|... .+..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 445678999999999999999999999999999999999888887766543 23 347777777654 667778888
Q ss_pred ccCCCCccccc-cccCCCCCcEEecCCCCCCCcCC-CCCCCCccceeeccCcc
Q 002458 407 LCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCT 457 (919)
Q Consensus 407 L~~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~~~ 457 (919)
+.-|++..++. .+..+++|..|.+-+|.+..... .|.++.+++++.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88888876653 47778888888888886655444 37778888888777665
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-17 Score=153.56 Aligned_cols=165 Identities=28% Similarity=0.453 Sum_probs=117.4
Q ss_pred ccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcE
Q 002458 419 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKI 498 (919)
Q Consensus 419 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~ 498 (919)
+..+.+.+.|.||+|++...+|.+..+.+|+.|++.+|+ +.++|.+++.+++|+.|+++-|+ +..+|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 344556666666666666666666677777777777654 56778888888888888888766 5677888888888888
Q ss_pred EEecCcCCCC-cCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCc
Q 002458 499 LCLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM 577 (919)
Q Consensus 499 L~Ls~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 577 (919)
|||++|++.+ .+|..|..|+.|+.|++++|.++-+|..++++++|+.|.+..|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd------------------------- 161 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND------------------------- 161 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-------------------------
Confidence 8888877654 46777777888888888888888777776666666666555544
Q ss_pred cccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhc
Q 002458 578 CLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 634 (919)
Q Consensus 578 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 634 (919)
+++ +|..++.+..|++|.+.+|.++-+|..+++
T Consensus 162 ----------------------ll~--lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 162 ----------------------LLS--LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ----------------------hhh--CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 233 666677777777777777777777755443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=1.8e-16 Score=164.34 Aligned_cols=266 Identities=18% Similarity=0.167 Sum_probs=179.8
Q ss_pred eeCCCCCCCCCCCCCCCcEEEEccCCCCcccccc-ccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCccccccc
Q 002458 385 WHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEV 462 (919)
Q Consensus 385 ~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~ 462 (919)
..+-.++.+|...+ +.-++++|..|.|+.+|++ |+.+++|+.||||+|.+....|+ |.++++|..|-+-+++.+..+
T Consensus 53 Cr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred ccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 34445666776664 4678899999999999865 88999999999999998888887 999999988888886666677
Q ss_pred c-ccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcc-cccCCCCCcEeecCCCccc---------
Q 002458 463 H-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIR--------- 531 (919)
Q Consensus 463 p-~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~--------- 531 (919)
| ..|++|..|+.|.+.-|+..-.....+..+++|..|.+.+|.+. .++. .+..+.+++.+.+..|.+-
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhh
Confidence 6 45788999999999888866666667788888888888886543 3444 6778888888888777632
Q ss_pred ----ccCccccCCCCCcEEEeCCCCCC-CCCCCcchhhcccc-cCCCCCCCccccCCC--CCCCCCCcEEecCCCCCCCC
Q 002458 532 ----QIPPSIVQLVNLKIFSLHGCKGQ-PPKILSSNFFLSLL-LPNKNSDSMCLSFPR--FTGLSSLQTLDLSDCNLLEG 603 (919)
Q Consensus 532 ----~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~ 603 (919)
..|..++...-.....+...+.. ....-.......+. .....+. .....|. |..+++|+.|+|++|. +++
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~ 288 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITR 288 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc-cch
Confidence 11222222221111111111100 00000000011110 0111111 1122333 7889999999999999 555
Q ss_pred CCCcccCCCCCCCeeeCCCCCCccCcH-hhhccCCCcEEecCcCccCCcCCC
Q 002458 604 AIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPE 654 (919)
Q Consensus 604 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~ 654 (919)
.-+.+|..+..+++|.|..|++..+.. .+.++..|+.|+|.+|+....-|.
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 668889999999999999999987765 458899999999999986554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9.8e-17 Score=147.73 Aligned_cols=159 Identities=25% Similarity=0.364 Sum_probs=96.1
Q ss_pred CCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccc
Q 002458 392 SLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKR 471 (919)
Q Consensus 392 ~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 471 (919)
.+|+.|.+.+++.|-|++|+++.+|+.+..+.+|+.|++++|++...++.++.++.|+.|++.-|. +..+|..+|.++.
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 345555556666666666666666666666666666666666555555556666666666665533 4555666666666
Q ss_pred cceeccccccccc-ccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCC
Q 002458 472 LILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHG 550 (919)
Q Consensus 472 L~~L~L~~n~~~~-~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 550 (919)
|+.|||.+|++.+ .+|..|..++.|+.|+|++|. .+.+|..++++++|+.|.+..|.+-++|..++.++.|++|.+.|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 6666666655432 356656566666666666643 34555566666666666666666666666666666666666666
Q ss_pred CC
Q 002458 551 CK 552 (919)
Q Consensus 551 ~~ 552 (919)
|+
T Consensus 183 nr 184 (264)
T KOG0617|consen 183 NR 184 (264)
T ss_pred ce
Confidence 65
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=4.9e-15 Score=163.35 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=16.9
Q ss_pred CCCCeeeCCCCCCc-----cCcHhhhccCCCcEEecCcCc
Q 002458 613 FSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCR 647 (919)
Q Consensus 613 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~ 647 (919)
+.|+.|++++|.++ .++..+..+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 45555555555543 223333444555555555554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=1.6e-14 Score=159.24 Aligned_cols=165 Identities=21% Similarity=0.163 Sum_probs=78.1
Q ss_pred cccCccccceecccccccccccCccccCCC---CCcEEEecCcCCCC----cCcccccCC-CCCcEeecCCCccc-----
Q 002458 465 SVGTLKRLILLNLKDCRNLVSFPKNVCLMK---SLKILCLCGCLKLE----KLPQDLGEV-ECLEELDVGGTAIR----- 531 (919)
Q Consensus 465 ~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~---~L~~L~Ls~~~~~~----~lp~~l~~l-~~L~~L~L~~n~i~----- 531 (919)
.+..+++|+.|++++|.+....+..+..+. +|++|++++|.... .+...+..+ ++|++|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344455555555555544333332222222 25555555555432 122233344 55666666666555
Q ss_pred ccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCC---CCCcc
Q 002458 532 QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG---AIPSD 608 (919)
Q Consensus 532 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~ 608 (919)
.++..+..+++|+.|++++|....... . .-...+..+++|+.|+|++|.+.+. .++..
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~---~----------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGI---R----------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHH---H----------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 233344555566666666654221000 0 0001123345666666666663211 12334
Q ss_pred cCCCCCCCeeeCCCCCCcc-CcHhh-hc----cCCCcEEecCcCcc
Q 002458 609 IGSLFSLEAIDLSGNNFFS-LPSSI-NQ----LLKLKILCLEKCRN 648 (919)
Q Consensus 609 l~~l~~L~~L~Ls~n~l~~-lp~~l-~~----l~~L~~L~L~~~~~ 648 (919)
+..+++|+.|++++|.++. -...+ .. .+.|+.|++++|..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 4556667777777776662 11122 12 36777777777753
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=4.2e-11 Score=151.39 Aligned_cols=283 Identities=13% Similarity=0.166 Sum_probs=175.4
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc----
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---- 78 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~---- 78 (919)
++...|.. ....+++.|.|++|.||||++..+..+. +.+.|+. +.. ...+.......++..+......
T Consensus 21 rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~~l~~~l~~~~~~~~~~ 92 (903)
T PRK04841 21 RLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFASYLIAALQQATNGHCSK 92 (903)
T ss_pred HHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHHHHHHHHHHhcCcccch
Confidence 45555553 2467899999999999999999988642 3688986 221 1223333334444433111000
Q ss_pred --------cccchhhhHHHHHHHHc--CCcEEEEEeCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCChhhHh--h
Q 002458 79 --------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDEHVLK--S 140 (919)
Q Consensus 79 --------~~~~~~~~~~~i~~~L~--~kk~LlVlDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~~~~--~ 140 (919)
...+.......+...+. +.+++||+||++..+ .+..+.... .++.++|||||...-.. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 93 SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHh
Confidence 00111222222333333 678999999997753 355555443 46788999999842111 1
Q ss_pred -hCCCceEEcC----CCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHHHH
Q 002458 141 -HGVTNTYKVR----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRL 215 (919)
Q Consensus 141 -~~~~~~~~v~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l 215 (919)
.......++. .|+.+|+.++|....... . ..+...++.+.++|+|+++..++..+...... .......+
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~ 243 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL 243 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh
Confidence 1112345555 999999999998765322 1 12456889999999999999988776543210 01112222
Q ss_pred hcCCChhHHHHH-HhhhccCChhhHHHhhhhccccCCCCHHHHHHHHhhcCCCchhhHHHHhhcCCeEE-eC---CEEee
Q 002458 216 QEAPNEKVLKVL-RISYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITI-VN---NKLWM 290 (919)
Q Consensus 216 ~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~-~~---~~~~m 290 (919)
...+...+.+.+ ...++.||++.+..++.+|++. .++.+.+..+.+.. .....++.|.+.+++.. .+ ..+++
T Consensus 244 ~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~ 320 (903)
T PRK04841 244 AGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRY 320 (903)
T ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEeh
Confidence 222334566654 3348999999999999999986 55555555554321 23567899999999653 22 36889
Q ss_pred hHHHHHHhHhhhhcc
Q 002458 291 HDLLQEMGWEIVREH 305 (919)
Q Consensus 291 Hdli~~~~~~i~~~e 305 (919)
|++++++.+.....+
T Consensus 321 H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 321 HPLFASFLRHRCQWE 335 (903)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999998877443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=6.9e-13 Score=144.08 Aligned_cols=231 Identities=23% Similarity=0.357 Sum_probs=167.6
Q ss_pred EEccCCCCcccccccc--CCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceeccccccc
Q 002458 405 LNLCNSRIKYLWKGIK--PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (919)
Q Consensus 405 L~L~~n~i~~l~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~ 482 (919)
|.|++.+++..|.+-. .+.--...||+.|++...+.++..+..|+.|.|..|. ...+|..+.++..|++|+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq- 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ- 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-
Confidence 4455555555554322 2334445677777776666667777778888888754 56788899999999999999987
Q ss_pred ccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcch
Q 002458 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSN 562 (919)
Q Consensus 483 ~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 562 (919)
+..+|..+|.|+ |+.|.+++| .++.+|+.++.+..|.+|+.+.|.+..+|+.++++.+|+.|++..|....
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------- 203 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------- 203 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-------
Confidence 667888888775 899999885 56778999998899999999999999999999999999999988887421
Q ss_pred hhcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhh---hccCCC
Q 002458 563 FFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI---NQLLKL 638 (919)
Q Consensus 563 ~~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L 638 (919)
+|. +. .-.|..||+|+|++.. +|..|..|+.|++|-|.+|.+.+=|..| +...-.
T Consensus 204 ------------------lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 204 ------------------LPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred ------------------CCHHHh-CCceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 222 33 2357888888888654 8888888888888888888888878766 445556
Q ss_pred cEEecCcCccCCcCCCCCCcccEeeccCCC
Q 002458 639 KILCLEKCRNLKSLPELPPEIVFVGAEDCT 668 (919)
Q Consensus 639 ~~L~L~~~~~l~~lp~lp~~L~~L~~~~c~ 668 (919)
++|+..-|+ .+.-+.++..++-...+.|.
T Consensus 263 KyL~~qA~q-~~~a~~~~t~~RP~~~~~c~ 291 (722)
T KOG0532|consen 263 KYLSTQACQ-SGGALDLYTTLRPRHFSSCH 291 (722)
T ss_pred eeecchhcc-ccCCcccccccCCcccCCcc
Confidence 778888875 33333444333333333443
No 27
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=4.5e-10 Score=110.74 Aligned_cols=141 Identities=26% Similarity=0.325 Sum_probs=87.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..........+...+... ...... .... ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~-~~~~~~---~~~~--~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQ-LPESIA---PIEE--LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHh-hccchh---hhHH--HH
Confidence 6899999999999999999999775543 233343 344433332222344444333 211111 1111 11
Q ss_pred HHHHHcCCcEEEEEeCCCCHHH-------------HHHHhcCCCCCCCCcEEEEEeCChhh---HhhhCCCceEEcCCCC
Q 002458 90 IRWRLCRKRVLVILDDVDQLEQ-------------LQALVGNHDWFGFGSRIIITSRDEHV---LKSHGVTNTYKVRGLD 153 (919)
Q Consensus 90 i~~~L~~kk~LlVlDdv~~~~~-------------l~~l~~~~~~~~~gsrIIiTTR~~~~---~~~~~~~~~~~v~~L~ 153 (919)
..-....++++||+|++|+... +..+... ...++.+||||+|.... .........+++++|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1122357899999999966654 2223332 12468999999998765 2233444689999999
Q ss_pred HHHHHHHHHHHh
Q 002458 154 YVEALQLFHLKV 165 (919)
Q Consensus 154 ~~ea~~Lf~~~a 165 (919)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=2.5e-11 Score=146.89 Aligned_cols=251 Identities=22% Similarity=0.273 Sum_probs=132.0
Q ss_pred CCcEEEEccCCCCccccccccCCCCCcEEecCCCCC-CCcCCC--CCCCCccceeeccCccccccccccccCccccceec
Q 002458 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCN-LIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (919)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~-~~~~~~--~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 476 (919)
...+...+.+|.+..++.... .++|++|-+..|.. ....+. |..+|.|+.|||++|...+.+|.+|+.|-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 344444444444444433322 23455555555541 222222 55566666666666666666666666666666666
Q ss_pred ccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCccc---ccCccccCCCCCcEEEeCCCCC
Q 002458 477 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKG 553 (919)
Q Consensus 477 L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~---~lp~~l~~l~~L~~L~L~~~~~ 553 (919)
+++.. ...+|..+.++++|.+|++..+.....+|.....|++|++|.+...... ..-..+.++.+|+.+.......
T Consensus 602 L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 602 LSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 66644 4466666666666666666666555555555555666666666554322 1112234455555555533332
Q ss_pred CC-CCCCcchhhcccccCCC-CCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccC------CCCCCCeeeCCCCCC
Q 002458 554 QP-PKILSSNFFLSLLLPNK-NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIG------SLFSLEAIDLSGNNF 625 (919)
Q Consensus 554 ~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~------~l~~L~~L~Ls~n~l 625 (919)
.. ........+.+...... .........+.+..+.+|+.|.+.+|...+..+ .+.. .++++..+...++..
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhcccc
Confidence 00 00011111111100000 112222334557788899999999998543111 1111 134555555556655
Q ss_pred ccCcHhhhccCCCcEEecCcCccCCcCC
Q 002458 626 FSLPSSINQLLKLKILCLEKCRNLKSLP 653 (919)
Q Consensus 626 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp 653 (919)
-..+.+....++|+.|.+..|+.++.+.
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCC
Confidence 5566666777899999999988877654
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=3.3e-08 Score=112.25 Aligned_cols=271 Identities=18% Similarity=0.148 Sum_probs=154.4
Q ss_pred hHHHHhHhcC--CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEEechhhhccCChHHHHHHHHHHHhcccC
Q 002458 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (919)
Q Consensus 2 ~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~ 77 (919)
++|...+... ....+.+.|+|++|+|||++++.+++.+.... -..+++. .. ...+...+..+++.++.....
T Consensus 40 ~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~---~~~~~~~~~~~i~~~l~~~~~ 115 (394)
T PRK00411 40 EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQ---IDRTRYAIFSEIARQLFGHPP 115 (394)
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CC---cCCCHHHHHHHHHHHhcCCCC
Confidence 3455555332 23345678999999999999999999876554 2234443 22 223455667777777543221
Q ss_pred c-cccchhhhHHHHHHHHc--CCcEEEEEeCCCCHH------HHHHHhcCCCCCCCCcE--EEEEeCChhhHhhh-----
Q 002458 78 L-IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGSR--IIITSRDEHVLKSH----- 141 (919)
Q Consensus 78 ~-~~~~~~~~~~~i~~~L~--~kk~LlVlDdv~~~~------~l~~l~~~~~~~~~gsr--IIiTTR~~~~~~~~----- 141 (919)
. ...+..+....+.+.+. +++++||+|+++... .+..+...... .++++ +|.++.+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~ 194 (394)
T PRK00411 116 PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVK 194 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHH
Confidence 1 11234455666666665 456899999998754 35555433221 12333 66676655432221
Q ss_pred --CCCceEEcCCCCHHHHHHHHHHHhcCC---CCCChhH-HHHHHHHHHHhCCchhHHHHHHhhc-----cC---CCHHH
Q 002458 142 --GVTNTYKVRGLDYVEALQLFHLKVSNG---KQPTDYR-VELSKYVVNYAGGLPLAIEVLGSFL-----CG---RSVEE 207 (919)
Q Consensus 142 --~~~~~~~v~~L~~~ea~~Lf~~~a~~~---~~~~~~~-~~~~~~i~~~~~GlPLal~~l~~~L-----~~---~~~~~ 207 (919)
-....+.+++++.++..+++..++... ...+++. ..+++.+....|..+.|+.++-... .+ -+.+.
T Consensus 195 s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~ 274 (394)
T PRK00411 195 SVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEED 274 (394)
T ss_pred hcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 112467899999999999999886322 1222222 2222222222455777777664321 11 24566
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhhccCChhhHHHhhhhccccC----CCCHHHHH----HHHhhcCCCc------hhhHH
Q 002458 208 WKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK----GKDEDRVR----KKLDSCGFNS------DIGIR 273 (919)
Q Consensus 208 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~l~----~~~~~~g~~~------~~~l~ 273 (919)
++.+.++.. .....-.+..||..+|..+..++...+ ......+. .+....|..+ ...+.
T Consensus 275 v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 275 VRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYIN 347 (394)
T ss_pred HHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 666666551 233455688999999988887775432 12222222 2333334322 34578
Q ss_pred HHhhcCCeEEe
Q 002458 274 ELLDKSLITIV 284 (919)
Q Consensus 274 ~L~~~sLi~~~ 284 (919)
.|.+.++|...
T Consensus 348 ~L~~~glI~~~ 358 (394)
T PRK00411 348 KLDMLGIINTR 358 (394)
T ss_pred HHHhcCCeEEE
Confidence 88889998864
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5e-11 Score=126.24 Aligned_cols=206 Identities=24% Similarity=0.122 Sum_probs=115.9
Q ss_pred CCCCCcEEecCCCCCCCcCC--CCCCCCccceeeccCccccc--cccccccCccccceecccccccccccCcc-ccCCCC
Q 002458 421 PLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLL--EVHQSVGTLKRLILLNLKDCRNLVSFPKN-VCLMKS 495 (919)
Q Consensus 421 ~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~~~~~lp~~-i~~l~~ 495 (919)
++.+|+.+.|.++....... ....+++++.|||++|-+.. .+..-...|++|+.|+|+.|++.....+. -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555443322221 23445555555555543211 12233455666777777766643322211 124667
Q ss_pred CcEEEecCcCCCCc-CcccccCCCCCcEeecCCCc-ccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCC
Q 002458 496 LKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTA-IRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 573 (919)
Q Consensus 496 L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~ 573 (919)
|+.|.|++|.+... +-..+..+++|+.|+|.+|. +..-..+..-+..|+.|+|++|.....
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~----------------- 261 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF----------------- 261 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-----------------
Confidence 77888888777632 22234556778888887773 222222334466777777777764221
Q ss_pred CCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcc-----cCCCCCCCeeeCCCCCCccCcH--hhhccCCCcEEecCcC
Q 002458 574 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSD-----IGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKC 646 (919)
Q Consensus 574 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~-----l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~ 646 (919)
..++..+.++.|+.|+++.|.+.+-.+|+. ...+++|++|+++.|++...+. .+..+++|+.|.+..|
T Consensus 262 -----~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 262 -----DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred -----ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 123345667777777777777655445554 3557788888888888765552 4566677777776666
Q ss_pred cc
Q 002458 647 RN 648 (919)
Q Consensus 647 ~~ 648 (919)
..
T Consensus 337 ~l 338 (505)
T KOG3207|consen 337 YL 338 (505)
T ss_pred cc
Confidence 53
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.4e-11 Score=127.45 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=82.7
Q ss_pred Cccccceecccccccccc-cCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccC--ccccCCCCCc
Q 002458 468 TLKRLILLNLKDCRNLVS-FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP--PSIVQLVNLK 544 (919)
Q Consensus 468 ~l~~L~~L~L~~n~~~~~-lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~ 544 (919)
.+++|+.|.|+.|.+... +-.....+++|+.|+|.+|...........-+..|++|+|++|.+-..+ ...+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 345566666666654421 1112234566777777776433322223334555777777777766555 4556677777
Q ss_pred EEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCC
Q 002458 545 IFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN 624 (919)
Q Consensus 545 ~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~ 624 (919)
.|+++.|......... +.+......+++|++|+++.|++.+-.....+..+++|+.|.+..|.
T Consensus 275 ~Lnls~tgi~si~~~d-----------------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPD-----------------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhccccCcchhcCCC-----------------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 7777776633210000 01111135678899999999996553344556677888888888887
Q ss_pred Cc
Q 002458 625 FF 626 (919)
Q Consensus 625 l~ 626 (919)
++
T Consensus 338 ln 339 (505)
T KOG3207|consen 338 LN 339 (505)
T ss_pred cc
Confidence 76
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.4e-10 Score=128.62 Aligned_cols=197 Identities=28% Similarity=0.395 Sum_probs=135.4
Q ss_pred EEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCcc-ccceecccccccccccCccccCCCCCcEEEecCcC
Q 002458 427 FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (919)
Q Consensus 427 ~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~ 505 (919)
.++++.+........+..++.++.|++.+|. ...++...+.+. +|+.|++++|. ...+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 4555555444444444455666666666644 445555566663 77777777765 44444456677777777777765
Q ss_pred CCCcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCC
Q 002458 506 KLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFT 585 (919)
Q Consensus 506 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 585 (919)
+. .+|...+.+++|+.|++++|.++.+|..+..+..|++|.+++|... .....+.
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------------------~~~~~~~ 229 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII------------------------ELLSSLS 229 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce------------------------ecchhhh
Confidence 43 4454445777888888888888888887777777888888887511 1123356
Q ss_pred CCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCC
Q 002458 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (919)
Q Consensus 586 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 653 (919)
.+.++..|.+.+|.+.. ++..++.+++|+.|++++|.++.++. ++.+.+|+.|+++++.....+|
T Consensus 230 ~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 230 NLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hcccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 67777777788887433 47778888889999999999998886 8888999999999988665444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.3e-10 Score=116.88 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcH--hhhccCCCcEEecCcCc
Q 002458 588 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCR 647 (919)
Q Consensus 588 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~ 647 (919)
-+.+.|.|+.|.+ + -.+.++.+-+|..||+++|+|..+.. +|+++|.|+.|.|.+|+
T Consensus 352 GNIKtL~La~N~i-E--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKI-E--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhH-h--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 3445555555542 1 12334555566666666666664432 56666666666666666
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.9e-11 Score=131.71 Aligned_cols=213 Identities=23% Similarity=0.336 Sum_probs=168.0
Q ss_pred CCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEee
Q 002458 445 VPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELD 524 (919)
Q Consensus 445 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 524 (919)
+.--...||+.|. ..++|..+..+..|+.|.|..|. ...+|..++++..|.+|+|+.|. +..+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 4445677888865 57889999999999999999987 56788889999999999999965 567888888888 99999
Q ss_pred cCCCcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCC
Q 002458 525 VGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEG 603 (919)
Q Consensus 525 L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 603 (919)
+++|+++.+|..++.+..|..|+.+.|... .+|+ ++++.+|+.|++..|++..
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-------------------------slpsql~~l~slr~l~vrRn~l~~- 203 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-------------------------SLPSQLGYLTSLRDLNVRRNHLED- 203 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhh-------------------------hchHHhhhHHHHHHHHHhhhhhhh-
Confidence 999999999999999999999999998742 2343 8899999999999999765
Q ss_pred CCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCccCCcCCC------CCCcccEeeccCCCccceecccc
Q 002458 604 AIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE------LPPEIVFVGAEDCTSLETISAFA 677 (919)
Q Consensus 604 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~------lp~~L~~L~~~~c~~L~~l~~~~ 677 (919)
+|..+..| .|..||+|.|+++.||.++.+|..|++|-|.+|+ |++-|. .-.-.++|++.-|.+=-.+++
T Consensus 204 -lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q~~~a~~~-- 278 (722)
T KOG0532|consen 204 -LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQSGGALDL-- 278 (722)
T ss_pred -CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhccccCCccc--
Confidence 88888855 5999999999999999999999999999999998 444331 113356777777742112221
Q ss_pred cccCCCCceeEecccccc
Q 002458 678 KLSRSPNIALNFLNCFKL 695 (919)
Q Consensus 678 n~~~~~~~~~~~~~~~~L 695 (919)
.....|..|..|.-.
T Consensus 279 ---~t~~RP~~~~~c~~e 293 (722)
T KOG0532|consen 279 ---YTTLRPRHFSSCHVE 293 (722)
T ss_pred ---ccccCCcccCCcchh
Confidence 122245556666644
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=7.5e-10 Score=125.83 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=158.1
Q ss_pred EEEecCcccCCCccccC--CCcceEEeeCCCCCCCCCCCCCC--CcEEEEccCCCCccccccccCCCCCcEEecCCCCCC
Q 002458 361 LLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSFRPE--KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (919)
Q Consensus 361 ~L~l~~~~l~~~~~~~~--~~L~~L~~~~~~~~~lp~~~~~~--~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~ 436 (919)
.|++..+.+........ ..++.|.+.++.+.++|...... +|+.|++++|.+.++|..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 57777777744444333 46899999999999999887554 899999999999999888999999999999999877
Q ss_pred CcCCCCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccC
Q 002458 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (919)
Q Consensus 437 ~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~ 516 (919)
...+..+.+++|+.|++++|. +..+|..++.+..|++|.+++|.. ...+..+.+++++..|.+.+|.. ..++..++.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKL-EDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCcee-eeccchhcc
Confidence 766666689999999999966 667787777788899999999863 34455577889999999777544 444778899
Q ss_pred CCCCcEeecCCCcccccCccccCCCCCcEEEeCCCCCCC
Q 002458 517 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQP 555 (919)
Q Consensus 517 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~~~~~~ 555 (919)
+++++.|++++|.++.++. +..+.+|+.|+++++....
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 9999999999999999988 9999999999999998543
No 36
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.96 E-value=3.6e-08 Score=105.70 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=106.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHH---
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR--- 91 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~--- 91 (919)
..++.|+|++|+||||+|+.+++.....=-..+++.+ ...+..++...+...+..... . .+.......+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~-~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETE-G-RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCC-C-CCHHHHHHHHHHHH
Confidence 4589999999999999999999987532112223321 123445666666665322211 1 11112222222
Q ss_pred -HH-HcCCcEEEEEeCCCCHH--HHHHHhc---CCCCCCCCcEEEEEeCChhhHhhh----------CCCceEEcCCCCH
Q 002458 92 -WR-LCRKRVLVILDDVDQLE--QLQALVG---NHDWFGFGSRIIITSRDEHVLKSH----------GVTNTYKVRGLDY 154 (919)
Q Consensus 92 -~~-L~~kk~LlVlDdv~~~~--~l~~l~~---~~~~~~~gsrIIiTTR~~~~~~~~----------~~~~~~~v~~L~~ 154 (919)
.. ..++++++|+||++... .++.+.. ..........|++|.... +.... .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 22 35788999999997754 3444332 111112233556666543 11111 1234678999999
Q ss_pred HHHHHHHHHHhcCCC--CCChhHHHHHHHHHHHhCCchhHHHHHHhhc
Q 002458 155 VEALQLFHLKVSNGK--QPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (919)
Q Consensus 155 ~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 200 (919)
+|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999987764221 1122345788999999999999999888765
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.9e-10 Score=115.63 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=87.2
Q ss_pred CCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceecccc
Q 002458 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (919)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 479 (919)
+.|++|||++|.|+++.++.+-+++++.|++|+|.+...- .+..+++|+.|||++|.. .++..+-..|-+.+.|+|+.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhh
Confidence 3678888888888888888888888888888888665443 377778888888887653 33333334455666777777
Q ss_pred cccccccCccccCCCCCcEEEecCcCCCCc-CcccccCCCCCcEeecCCCcccccCc
Q 002458 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP 535 (919)
Q Consensus 480 n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~L~~n~i~~lp~ 535 (919)
|. +..+. .+.++-+|..||+++|.+... -...+|++++|+++.|.+|.+..+|+
T Consensus 362 N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 65 33333 255667777777777655321 12346777777777777777665554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=5.1e-11 Score=123.02 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=132.9
Q ss_pred ccccCCCCCcEEecCCCCCCCcCCC-----CCCCCccceeeccCccccccccccccCccccceecccccccccccCcccc
Q 002458 417 KGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 491 (919)
Q Consensus 417 ~~~~~l~~L~~L~Ls~n~~~~~~~~-----~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~ 491 (919)
+.+..+++|++||||+|.+....+. ++.+.+|++|.|.+|.....-...++. .|..|. .++ .+.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~ 154 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAA 154 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccC
Confidence 3456677889999998877655442 566788888888887643322222221 122222 111 133
Q ss_pred CCCCCcEEEecCcCCCC----cCcccccCCCCCcEeecCCCccc-----ccCccccCCCCCcEEEeCCCCCCCCCCCcch
Q 002458 492 LMKSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILSSN 562 (919)
Q Consensus 492 ~l~~L~~L~Ls~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 562 (919)
+-+.|+++....|.+-. .+...+...+.|+.+.+..|.|. -+-..+..+++|+.|+|+.|..........
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L- 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL- 233 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-
Confidence 55678888887765532 22345666788999999988876 233467889999999999987433211110
Q ss_pred hhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCC---Cccc-CCCCCCCeeeCCCCCCc-----cCcHhhh
Q 002458 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI---PSDI-GSLFSLEAIDLSGNNFF-----SLPSSIN 633 (919)
Q Consensus 563 ~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---p~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~ 633 (919)
-..++.+++|+.|++++|.+.+..- ...+ ...++|+.|.+.+|.++ .+-.++.
T Consensus 234 ------------------akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 234 ------------------AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred ------------------HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence 0125667799999999998644221 1111 34789999999999988 3445677
Q ss_pred ccCCCcEEecCcCcc
Q 002458 634 QLLKLKILCLEKCRN 648 (919)
Q Consensus 634 ~l~~L~~L~L~~~~~ 648 (919)
..+.|+.|+|++|+.
T Consensus 296 ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 296 EKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhhHHhcCCcccc
Confidence 899999999999984
No 39
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.90 E-value=4.3e-07 Score=102.06 Aligned_cols=272 Identities=17% Similarity=0.130 Sum_probs=149.3
Q ss_pred hHHHHhHhc--CCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCC------eeEEEEechhhhccCChHHHHHHHHHHHh
Q 002458 2 EKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (919)
Q Consensus 2 ~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~s~~~~l~~l~~~ll~~~~ 73 (919)
++|...+.. .....+.+.|+|++|+|||++|+++++.+....+ ..+|+. .. ...+...+..+++.++.
T Consensus 25 ~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~---~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQ---ILDTLYQVLVELANQLR 100 (365)
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CC---CCCCHHHHHHHHHHHHh
Confidence 345555543 1233467899999999999999999997653322 234443 22 22344566666776653
Q ss_pred c--ccCc-cccchhhhHHHHHHHHc--CCcEEEEEeCCCCHH-----HHHHHhcCCCC---CCCCcEEEEEeCChhhHhh
Q 002458 74 M--ERDL-IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-----QLQALVGNHDW---FGFGSRIIITSRDEHVLKS 140 (919)
Q Consensus 74 ~--~~~~-~~~~~~~~~~~i~~~L~--~kk~LlVlDdv~~~~-----~l~~l~~~~~~---~~~gsrIIiTTR~~~~~~~ 140 (919)
. .... ...+..+....+.+.+. +++++||||++|... .+..+.....+ .+....+|.+|.+......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~ 180 (365)
T TIGR02928 101 GSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFREN 180 (365)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhh
Confidence 2 1111 11122333444555553 567899999998872 13344322111 1133455666654432211
Q ss_pred h------C-CCceEEcCCCCHHHHHHHHHHHhc---CCCCCChhHHHHHHHHHHHhCCchhH-HHHHHhhc-----cC--
Q 002458 141 H------G-VTNTYKVRGLDYVEALQLFHLKVS---NGKQPTDYRVELSKYVVNYAGGLPLA-IEVLGSFL-----CG-- 202 (919)
Q Consensus 141 ~------~-~~~~~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~l~~~L-----~~-- 202 (919)
. . ....+.+++.+.+|..+++..++. .....+++..+.+.+++....|.|-. +.++-... .+
T Consensus 181 l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~ 260 (365)
T TIGR02928 181 LDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAE 260 (365)
T ss_pred cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 1 1 124688999999999999998874 22223333445556677777788743 33322111 11
Q ss_pred -CCHHHHHHHHHHHhcCCChhHHHHHHhhhccCChhhHHHhhhhccccCC----CCHHHHH----HHHhhcCCCc-----
Q 002458 203 -RSVEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFKG----KDEDRVR----KKLDSCGFNS----- 268 (919)
Q Consensus 203 -~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~----~~~~~l~----~~~~~~g~~~----- 268 (919)
-+.+..+.+.+.+. .....-.+.+||..+|.++..++...+. .....+. .+....|..+
T Consensus 261 ~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 333 (365)
T TIGR02928 261 RVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRR 333 (365)
T ss_pred CCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 24455555555442 2334456778999888877777643321 1222222 2223333322
Q ss_pred -hhhHHHHhhcCCeEEe
Q 002458 269 -DIGIRELLDKSLITIV 284 (919)
Q Consensus 269 -~~~l~~L~~~sLi~~~ 284 (919)
...+..|...++|+..
T Consensus 334 ~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 334 ISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCeEEE
Confidence 3457888888999875
No 40
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.90 E-value=1.6e-07 Score=108.43 Aligned_cols=274 Identities=18% Similarity=0.174 Sum_probs=172.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc------------cc
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL------------II 80 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~------------~~ 80 (919)
.+.|.+.|..++|.||||++..... ....-..+.|+.--. ...+.......++..+..-... ..
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde---~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~ 110 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDE---SDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQY 110 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCC---ccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccc
Confidence 4789999999999999999999988 444556789987321 2334555555555553211111 11
Q ss_pred cchhhhHHHHHHHHc--CCcEEEEEeCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCChhhHhh---hCCCceEEc
Q 002458 81 WDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDEHVLKS---HGVTNTYKV 149 (919)
Q Consensus 81 ~~~~~~~~~i~~~L~--~kk~LlVlDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~---~~~~~~~~v 149 (919)
.+.......+...+. .++..+||||..-.. -++.+.... .++-..|||||...-+.. --.+...++
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 122223333333333 368999999985443 266666654 478999999998632221 111233444
Q ss_pred C----CCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccC-CCHHHHHHHHHHHhcCCChhHH
Q 002458 150 R----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEAPNEKVL 224 (919)
Q Consensus 150 ~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~ 224 (919)
. .++.+|+.++|...... +-....++.+.++.+|.+-|+..++-.+++ .+.+.-...+. .. .+.+.
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~ 258 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---GA-ASHLS 258 (894)
T ss_pred ChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---ch-HHHHH
Confidence 4 68899999999877521 112245788999999999999999888874 33332222221 11 22233
Q ss_pred H-HHHhhhccCChhhHHHhhhhccccCCCCHHHHHHHHhhcCCCchhhHHHHhhcCCeEEe----CCEEeehHHHHHHhH
Q 002458 225 K-VLRISYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV----NNKLWMHDLLQEMGW 299 (919)
Q Consensus 225 ~-~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~----~~~~~mHdli~~~~~ 299 (919)
+ ...--+|.||++.|..++.+|++..-. +.+...+...+ .....++.|.+++|.-.. ++.++.|.++.||-+
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~ 335 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLR 335 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHH
Confidence 3 334457999999999999999884321 22222221111 123448899999887754 567999999999988
Q ss_pred hhhhcc
Q 002458 300 EIVREH 305 (919)
Q Consensus 300 ~i~~~e 305 (919)
...+.+
T Consensus 336 ~r~~~~ 341 (894)
T COG2909 336 QRLQRE 341 (894)
T ss_pred hhhccc
Confidence 876664
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.87 E-value=4.5e-08 Score=106.99 Aligned_cols=247 Identities=15% Similarity=0.102 Sum_probs=134.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc-cccch----hhhHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDV----HKGIN 88 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~-~~~~~----~~~~~ 88 (919)
..+.+.++|++|+|||+||+++++.+...+. ........ ....+ ...+..+ ..... -+.+. .....
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~---~~~~l-~~~l~~~-~~~~vl~iDEi~~l~~~~~e 99 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALE---KPGDL-AAILTNL-EEGDVLFIDEIHRLSPAVEE 99 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchhc---CchhH-HHHHHhc-ccCCEEEEehHhhhCHHHHH
Confidence 3556889999999999999999998754321 11110011 11111 1112221 11110 00000 11122
Q ss_pred HHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh--CCCceEEcCCCCHHHHHHHHHHHhc
Q 002458 89 LIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--GVTNTYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~--~~~~~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.... .....++++.++.+|..+++.+.+.
T Consensus 100 ~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred HhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 333444445555555554444333221 12355666777765433321 2234789999999999999998875
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHH-HHhcCCC---hhHHHHHHhhhccCChhhHHHh
Q 002458 167 NGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN-RLQEAPN---EKVLKVLRISYDGLDRRDKEIF 242 (919)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~-~l~~~~~---~~i~~~l~~sy~~L~~~~k~~f 242 (919)
.... ....+....+++.|+|.|-.+..++..+ |..+.. .-..... ......+...|.++++.++..+
T Consensus 174 ~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L 244 (305)
T TIGR00635 174 LLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLL 244 (305)
T ss_pred HhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3322 2224567889999999997655444322 111100 0000111 1122225667888998888777
Q ss_pred h-hhccccCC-CCHHHHHHHHhhcCCCchhhHH-HHhhcCCeEEe
Q 002458 243 L-DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLDKSLITIV 284 (919)
Q Consensus 243 l-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~ 284 (919)
. .++.+..+ ...+.+...++......+..++ .|++++||...
T Consensus 245 ~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 245 SVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 6 44555433 4566777777666555666677 69999999744
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.77 E-value=3e-08 Score=109.09 Aligned_cols=248 Identities=15% Similarity=0.102 Sum_probs=132.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc-cccchh----hhHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVH----KGIN 88 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~-~~~~~~----~~~~ 88 (919)
..+.+.|+|++|+||||+|+.+++.+...+. +.. ....... .....++..+ ..... -+.+.+ ...+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~l~~~l~~l-~~~~vl~IDEi~~l~~~~~e 120 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GDLAAILTNL-EEGDVLFIDEIHRLSPVVEE 120 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HHHHHHHHhc-ccCCEEEEecHhhcchHHHH
Confidence 3567889999999999999999998764321 111 1001111 1111222221 10000 000000 0111
Q ss_pred HHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh--CCCceEEcCCCCHHHHHHHHHHHhc
Q 002458 89 LIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--GVTNTYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~--~~~~~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.... .....++++.++.++..+++.+.+.
T Consensus 121 ~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 121 ILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred HHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 222233333444444443332221110 12245566677754433221 1234789999999999999998875
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHHHHhcCCC---hhHHHHHHhhhccCChhhHHHhh
Q 002458 167 NGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPN---EKVLKVLRISYDGLDRRDKEIFL 243 (919)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl 243 (919)
.... ....+.+..|+++|+|.|-.+..+...+ ..|..... -+.... ....+.+...+.+|++..+..+.
T Consensus 195 ~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~ 266 (328)
T PRK00080 195 ILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLR 266 (328)
T ss_pred HcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHH
Confidence 4322 2233668899999999996544443322 11211100 001111 22234456677889988888776
Q ss_pred -hhccccCC-CCHHHHHHHHhhcCCCchhhHH-HHhhcCCeEEe
Q 002458 244 -DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLDKSLITIV 284 (919)
Q Consensus 244 -~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~ 284 (919)
.+..|..+ ...+.+...++......+..++ .|++.+||+..
T Consensus 267 ~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 267 TIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 44555544 3567777777655555565677 89999999754
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=2.9e-09 Score=103.81 Aligned_cols=103 Identities=29% Similarity=0.412 Sum_probs=28.0
Q ss_pred CCCcEeecCCCcccccCcccc-CCCCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecC
Q 002458 518 ECLEELDVGGTAIRQIPPSIV-QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLS 596 (919)
Q Consensus 518 ~~L~~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls 596 (919)
..+++|+|++|.|+.+. .++ .+.+|+.|++++|... .++.+..++.|+.|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-------------------------~l~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-------------------------KLEGLPGLPRLKTLDLS 72 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---------------------------TT----TT--EEE--
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCc-------------------------cccCccChhhhhhcccC
Confidence 34556666666655543 333 3555666666655532 12334455666666666
Q ss_pred CCCCCCCCCCccc-CCCCCCCeeeCCCCCCccCc--HhhhccCCCcEEecCcCcc
Q 002458 597 DCNLLEGAIPSDI-GSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCRN 648 (919)
Q Consensus 597 ~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~ 648 (919)
+|.+.+ +...+ ..+++|+.|+|++|+|..+. ..++.+++|+.|+|.+|+.
T Consensus 73 ~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 73 NNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 666432 33333 24666666666666665333 2455666677777766663
No 44
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.77 E-value=4e-08 Score=102.81 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=93.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHH------HHHHHHHH---
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL------QEQLLSEV--- 72 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l------~~~ll~~~--- 72 (919)
++|.+++.. +..+.+.|+|+.|+|||+|++.+.+.....-..++|+........ ...... ...+...+
T Consensus 9 ~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 85 (234)
T PF01637_consen 9 EKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGIS 85 (234)
T ss_dssp HHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHH
T ss_pred HHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555554 235789999999999999999999987443334455443221111 011111 11111111
Q ss_pred hcccCc------cccchhhhHHHHHHHHc--CCcEEEEEeCCCCHH-----------HHHHHhcCCCCCCCCcEEEEEeC
Q 002458 73 LMERDL------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-----------QLQALVGNHDWFGFGSRIIITSR 133 (919)
Q Consensus 73 ~~~~~~------~~~~~~~~~~~i~~~L~--~kk~LlVlDdv~~~~-----------~l~~l~~~~~~~~~gsrIIiTTR 133 (919)
...... ...........+.+.+. +++++||+||++... .+..+...... .....+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S 164 (234)
T PF01637_consen 86 IPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGS 164 (234)
T ss_dssp CCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEES
T ss_pred cccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECC
Confidence 111110 01122233344444443 345999999986665 12222322111 23444555554
Q ss_pred ChhhHhh--------hCCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 134 DEHVLKS--------HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 134 ~~~~~~~--------~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
...+... .+....+.+++|+.+++.+++...+-....- +...+..++|...+||+|..|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp SHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred chHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444433 2233459999999999999999976443111 22345679999999999988764
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=7.1e-09 Score=101.14 Aligned_cols=132 Identities=21% Similarity=0.286 Sum_probs=36.6
Q ss_pred CCCCCCCCCCcEEEEccCCCCcccccccc-CCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccc-cCc
Q 002458 392 SLPVSFRPEKLFKLNLCNSRIKYLWKGIK-PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSV-GTL 469 (919)
Q Consensus 392 ~lp~~~~~~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l-~~l 469 (919)
..+....+.++++|+|++|.|+.+. .++ .+.+|+.|+|++|.+. .++.+..+++|++|++++|.+.. +.+.+ ..+
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l 87 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-
T ss_pred ccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCc-cccchHHhC
Confidence 3344445556777777777777663 344 4667777777777443 34456666666666666654332 22222 234
Q ss_pred cccceecccccccccccCccccCCCCCcEEEecCcCCCCc-CcccccCCCCCcEeecCCCcccccCc----cccCCCCCc
Q 002458 470 KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP----SIVQLVNLK 544 (919)
Q Consensus 470 ~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~L~~n~i~~lp~----~l~~l~~L~ 544 (919)
++|+.|++++|+ +... --..+..+++|+.|++.+|.++.-+. .+..+++|+
T Consensus 88 p~L~~L~L~~N~------------------------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 88 PNLQELYLSNNK------------------------ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp TT--EEE-TTS---------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred CcCCEEECcCCc------------------------CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 555555555544 3210 01234455666666666666664432 345667777
Q ss_pred EEEeCC
Q 002458 545 IFSLHG 550 (919)
Q Consensus 545 ~L~L~~ 550 (919)
.||-..
T Consensus 144 ~LD~~~ 149 (175)
T PF14580_consen 144 VLDGQD 149 (175)
T ss_dssp EETTEE
T ss_pred eeCCEE
Confidence 766543
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=1.9e-08 Score=107.45 Aligned_cols=281 Identities=20% Similarity=0.241 Sum_probs=183.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
...|-|.++|.|||||||++-.+.. +...|....++.+...+..+.-+-...-..+- ....+-+.....+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~g-------l~~~~g~~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALG-------LHVQPGDSAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcc-------cccccchHHHHHHHH
Confidence 4568999999999999999999999 88899988888877766554333222221111 111122234556667
Q ss_pred HHcCCcEEEEEeCCCCHHH-HHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcCCCCHH-HHHHHHHHHhcCC--
Q 002458 93 RLCRKRVLVILDDVDQLEQ-LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYV-EALQLFHLKVSNG-- 168 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~~L~~~-ea~~Lf~~~a~~~-- 168 (919)
+..++|.++|+||..+... --.+........+.-+|+.|+|+... ...+..+.++.|+.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7888999999999877654 22222222222456689999997633 344567888888755 7999998776321
Q ss_pred -CCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHH----HHhcC------CChhHHHHHHhhhccCChh
Q 002458 169 -KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN----RLQEA------PNEKVLKVLRISYDGLDRR 237 (919)
Q Consensus 169 -~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~~ 237 (919)
-...........+|.+..+|.|++|...++..+.....+-.+.++ .++.. ..+.....+..||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 112223345678899999999999999999988765554433333 12221 2345566789999999999
Q ss_pred hHHHhhhhccccCCCCHHHHHHHHh-hc----CCCchhhHHHHhhcCCeEEeC----CEEeehHHHHHHhHhhhhc
Q 002458 238 DKEIFLDIACFFKGKDEDRVRKKLD-SC----GFNSDIGIRELLDKSLITIVN----NKLWMHDLLQEMGWEIVRE 304 (919)
Q Consensus 238 ~k~~fl~~a~f~~~~~~~~l~~~~~-~~----g~~~~~~l~~L~~~sLi~~~~----~~~~mHdli~~~~~~i~~~ 304 (919)
++..|-.++.|..+++.+.....-. .. .|..-..+..+++++++...+ -+++.-+-.+.|+.+.+.+
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988887653222211 11 111233467788898887652 2345555556665555444
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.64 E-value=2.8e-07 Score=95.64 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=92.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+.+.|||++|+|||+||+++++.+..+...+.|+.. ... .....+ +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~~---~~~~~~----------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SKS---QYFSPA----------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HHh---hhhhHH----------------------HHhhc
Confidence 3578999999999999999999987666666777752 100 000001 11112
Q ss_pred cCCcEEEEEeCCCCH---HHHH-HHhcCCCC-CCCCcEEEEEeCC----------hhhHhhhCCCceEEcCCCCHHHHHH
Q 002458 95 CRKRVLVILDDVDQL---EQLQ-ALVGNHDW-FGFGSRIIITSRD----------EHVLKSHGVTNTYKVRGLDYVEALQ 159 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~---~~l~-~l~~~~~~-~~~gsrIIiTTR~----------~~~~~~~~~~~~~~v~~L~~~ea~~ 159 (919)
+ +.-+||+||++.. .+|+ .+..-... ...|.++||+|.+ +.+.........++++.+++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 2348999999763 2333 11111110 1236666554443 2444444555689999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 160 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
++.+.+..... .--++....+++++.|..-++..+
T Consensus 169 iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99999875432 122366788888888776555443
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.4e-07 Score=98.48 Aligned_cols=217 Identities=22% Similarity=0.277 Sum_probs=122.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
..+.-.-+||++|+||||||+.++......|...-=+ ..++.++.+- +.+ .-+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i-~e~-----------------a~~~ 99 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREI-IEE-----------------ARKN 99 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHH-HHH-----------------HHHH
Confidence 4556667999999999999999999887766432211 2233333221 111 0122
Q ss_pred HHcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCChhhHh---hhCCCceEEcCCCCHHHHHHHHHHHh
Q 002458 93 RLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEHVLK---SHGVTNTYKVRGLDYVEALQLFHLKV 165 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~~~~---~~~~~~~~~v~~L~~~ea~~Lf~~~a 165 (919)
+..++|.++.+|.|+.. .|-+.+++... .|.-|+| ||.++...- ...-..++++++|+.++-.+++.+-+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 44589999999999654 56777777653 6777777 677653211 12334699999999999999998844
Q ss_pred cCCCCCC-----hhHHHHHHHHHHHhCCchhHH----HHHHhhccCC---CHHHHHHHHHHHhcC------CChhHHHHH
Q 002458 166 SNGKQPT-----DYRVELSKYVVNYAGGLPLAI----EVLGSFLCGR---SVEEWKSALNRLQEA------PNEKVLKVL 227 (919)
Q Consensus 166 ~~~~~~~-----~~~~~~~~~i~~~~~GlPLal----~~l~~~L~~~---~~~~w~~~l~~l~~~------~~~~i~~~l 227 (919)
......- .-.++..+.+++.++|---+. +.+...-+.. ..+..++.+++-... ..-++...+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 2221111 122356677888888854322 2222222221 234444444432111 112345556
Q ss_pred HhhhccCChhhHHHhhhhcc-ccCCCCHHHHHHH
Q 002458 228 RISYDGLDRRDKEIFLDIAC-FFKGKDEDRVRKK 260 (919)
Q Consensus 228 ~~sy~~L~~~~k~~fl~~a~-f~~~~~~~~l~~~ 260 (919)
.-|..+=+++.. +-|+|- +-.|.+..++.+.
T Consensus 257 hKSvRGSD~dAA--LyylARmi~~GeDp~yiARR 288 (436)
T COG2256 257 HKSVRGSDPDAA--LYYLARMIEAGEDPLYIARR 288 (436)
T ss_pred HHhhccCCcCHH--HHHHHHHHhcCCCHHHHHHH
Confidence 666665554432 334443 3334556555443
No 49
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.62 E-value=8.9e-07 Score=108.20 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=133.0
Q ss_pred CCcEEEEEeCCCCHHH-----HHHHhcCCC---CCCCCcEEEEEeCCh--hhHhhhCCCceEEcCCCCHHHHHHHHHHHh
Q 002458 96 RKRVLVILDDVDQLEQ-----LQALVGNHD---WFGFGSRIIITSRDE--HVLKSHGVTNTYKVRGLDYVEALQLFHLKV 165 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~-----l~~l~~~~~---~~~~gsrIIiTTR~~--~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 165 (919)
.+++++|+||++..+. ++.++.... ..-.-.-.+.|.+.. .+.........+.+.+|+..+..++.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 4699999999966654 445544432 000122233344433 122222334689999999999999998877
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCC-------CHHHHHHHHHHHhcCCC-hhHHHHHHhhhccCChh
Q 002458 166 SNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR-------SVEEWKSALNRLQEAPN-EKVLKVLRISYDGLDRR 237 (919)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~ 237 (919)
...... ..+....|+++..|+|+.+..+-..+... +...|..-...+..... +.+.+.+..-.+.||..
T Consensus 233 ~~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 233 GCTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred CCcccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 442222 23567889999999999999888877652 34455555444443322 33566788999999999
Q ss_pred hHHHhhhhccccCCCCHHHHHHHHhhcCCCchhh-HHHHhhcCCeEEe---------CC---EEeehHHHHHHhHhhhhc
Q 002458 238 DKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIG-IRELLDKSLITIV---------NN---KLWMHDLLQEMGWEIVRE 304 (919)
Q Consensus 238 ~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~-l~~L~~~sLi~~~---------~~---~~~mHdli~~~~~~i~~~ 304 (919)
.|.++-..||+.+.++.+.+..++.......-.+ .+.|.+ ++|.+. .. +-..|+.+|+.+.....+
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 9999999999999999988888876533222222 334443 444431 11 226899999988765544
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=5.3e-08 Score=116.02 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=92.0
Q ss_pred ccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecC
Q 002458 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 526 (919)
Q Consensus 447 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~ 526 (919)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999988888899999999999999999998888899888899999999999999988999999999999999999
Q ss_pred CCccc-ccCccccCC-CCCcEEEeCCCC
Q 002458 527 GTAIR-QIPPSIVQL-VNLKIFSLHGCK 552 (919)
Q Consensus 527 ~n~i~-~lp~~l~~l-~~L~~L~L~~~~ 552 (919)
+|.++ .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99888 788877653 467788888876
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=1.3e-08 Score=105.57 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCCCCcEEEecCcCCCCcCccc----ccCCCCCcEeecCCCccccc--------------CccccCCCCCcEEEeCCCCC
Q 002458 492 LMKSLKILCLCGCLKLEKLPQD----LGEVECLEELDVGGTAIRQI--------------PPSIVQLVNLKIFSLHGCKG 553 (919)
Q Consensus 492 ~l~~L~~L~Ls~~~~~~~lp~~----l~~l~~L~~L~L~~n~i~~l--------------p~~l~~l~~L~~L~L~~~~~ 553 (919)
.++.|++|+||+|.+-...++. +.++++|++|+|.+|.+... ..-+..-++|+.+....|+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3456666666666554433332 34456666666666665421 11223445677776666653
Q ss_pred CCCCCCcchhhcccccCCCCCCCccccC-CCCCCCCCCcEEecCCCCCCCCCC---CcccCCCCCCCeeeCCCCCCc---
Q 002458 554 QPPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTGLSSLQTLDLSDCNLLEGAI---PSDIGSLFSLEAIDLSGNNFF--- 626 (919)
Q Consensus 554 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---p~~l~~l~~L~~L~Ls~n~l~--- 626 (919)
..... ..+ ..+...+.|+.+.++.|.+....+ -..+..+++|+.|||..|-|+
T Consensus 170 en~ga--------------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 170 ENGGA--------------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred ccccH--------------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 21100 000 114455677777777777533222 223566777888888777776
Q ss_pred --cCcHhhhccCCCcEEecCcCcc
Q 002458 627 --SLPSSINQLLKLKILCLEKCRN 648 (919)
Q Consensus 627 --~lp~~l~~l~~L~~L~L~~~~~ 648 (919)
.+...+..+++|+.|++++|..
T Consensus 230 s~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHhcccchheeeccccccc
Confidence 2334456677777777777763
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=8.9e-08 Score=114.07 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=79.4
Q ss_pred CcEEecCCCCCCCcCCC-CCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecC
Q 002458 425 LKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 503 (919)
Q Consensus 425 L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~ 503 (919)
++.|+|++|.+...+|. ++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66777777776666554 77777888888888777777887788888888888888887777887778888888888888
Q ss_pred cCCCCcCcccccCC-CCCcEeecCCCc
Q 002458 504 CLKLEKLPQDLGEV-ECLEELDVGGTA 529 (919)
Q Consensus 504 ~~~~~~lp~~l~~l-~~L~~L~L~~n~ 529 (919)
|.+.+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 88777888776653 356677777764
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.52 E-value=9.1e-07 Score=92.11 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=95.5
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~ 82 (919)
++.+++.. ...+.|.|+|++|+|||++|+.+++.........+++. ....... ...++
T Consensus 28 ~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~~~------------- 85 (226)
T TIGR03420 28 ALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPEVL------------- 85 (226)
T ss_pred HHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHHHH-------------
Confidence 44555432 34568899999999999999999997755544455554 2221110 00111
Q ss_pred hhhhHHHHHHHHcCCcEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCChh---------hHhhhCCCceEE
Q 002458 83 VHKGINLIRWRLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYK 148 (919)
Q Consensus 83 ~~~~~~~i~~~L~~kk~LlVlDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~~---------~~~~~~~~~~~~ 148 (919)
+.+.+ .-+||+||++... . .+.+...... ...+.++|+||+... +.........++
T Consensus 86 ---------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 86 ---------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred ---------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 11222 2378999997653 1 2223221110 123458999888532 122222245799
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 002458 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (919)
Q Consensus 149 v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 198 (919)
+++++.+|...++..++..... .-..+..+.+++++.|+|..+..+..
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999876532221 11235567788889999887776543
No 54
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=2.8e-07 Score=86.38 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=77.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
+++.|.|+.|+||||+++.+++... .-+..++++ ..+... ... . . . +..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~----~~~----~-~-----------~-~~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD----RRL----A-D-----------P-DLLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH----HHH----h-h-----------h-hhHHHHHHhhc
Confidence 6899999999999999999998765 333455554 111110 000 0 0 0 01233333334
Q ss_pred CCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh------CCCceEEcCCCCHHHH
Q 002458 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH------GVTNTYKVRGLDYVEA 157 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~------~~~~~~~v~~L~~~ea 157 (919)
.++.+|++|++....+|..........++..+|++|+......... +....+++.+|+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4788999999999988877766655455678999999987665331 2234689999998774
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-08 Score=114.85 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcccccCCCCCc
Q 002458 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 521 (919)
Q Consensus 442 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 521 (919)
+..+.+|+.|++.+|.+ ..+...+..+++|++|++++|.+... .. +..++.|+.|++++|.+.. + ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i-~~-l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL-EG-LSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccch-hhcccchhhhhcchheeccccccccc-cc-hhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 44444444444444332 22222244455555555555443222 11 3344445555555554432 1 1233355555
Q ss_pred EeecCCCcccccCcc-ccCCCCCcEEEeCCCCC
Q 002458 522 ELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKG 553 (919)
Q Consensus 522 ~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~~~~ 553 (919)
.+++++|.+..+... +..+.+|+.+.+.+|..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 556666555554432 35555555555655553
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=1.1e-06 Score=82.80 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=74.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCC-----CCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~ 88 (919)
+-+++.|+|.+|+|||++++.+++....+ -..++|+. .........+..+++..+...... ..+..+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 34789999999999999999999976542 23455665 333447788888888885443332 334555566
Q ss_pred HHHHHHcCCc-EEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 002458 89 LIRWRLCRKR-VLVILDDVDQL---EQLQALVGNHDWFGFGSRIIITSRD 134 (919)
Q Consensus 89 ~i~~~L~~kk-~LlVlDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~ 134 (919)
.+.+.+...+ .+||+|+++.. +.++.+..-.+ ..+.++|+..++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777776554 59999999876 23555543333 677888888876
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.43 E-value=1.6e-05 Score=90.25 Aligned_cols=161 Identities=23% Similarity=0.335 Sum_probs=95.0
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccch
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~ 83 (919)
+..++.. .....+.++|++|+||||+|+.+++.....|.. +... ..+...+ ++++..
T Consensus 27 L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i-r~ii~~------------ 83 (413)
T PRK13342 27 LRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL-REVIEE------------ 83 (413)
T ss_pred HHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH-HHHHHH------------
Confidence 4444443 345678899999999999999999987654421 1110 1111111 111111
Q ss_pred hhhHHHHHH-HHcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCChh--hHh-hhCCCceEEcCCCCHH
Q 002458 84 HKGINLIRW-RLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEH--VLK-SHGVTNTYKVRGLDYV 155 (919)
Q Consensus 84 ~~~~~~i~~-~L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~--~~~-~~~~~~~~~v~~L~~~ 155 (919)
... ...+++.+|++|+++.. .+.+.+..... .|..++| ||.+.. +.. ...-...+++..++.+
T Consensus 84 ------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e 154 (413)
T PRK13342 84 ------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEE 154 (413)
T ss_pred ------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHH
Confidence 111 12457889999999765 34566655443 3555555 344332 111 1122358999999999
Q ss_pred HHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHhCCchhHHHHH
Q 002458 156 EALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 156 ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
+..+++.+.+....... ....+..+.++++++|.+..+..+
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 99999988753311111 223466788999999998766544
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=4.3e-08 Score=111.68 Aligned_cols=216 Identities=23% Similarity=0.198 Sum_probs=99.1
Q ss_pred CCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccccccCccccceecccc
Q 002458 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (919)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 479 (919)
.+|+.|++.+|.|+++...+..+++|++|++++|.+ +.+..+..++.|+.|++++|.+... ..+..+..|+.+++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccc-ccccchhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence 445555555555555544345555555555555532 2333344444555555555443221 2333355555555555
Q ss_pred cccccccC-ccccCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCccccCCC--CCcEEEeCCCCCCCC
Q 002458 480 CRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLV--NLKIFSLHGCKGQPP 556 (919)
Q Consensus 480 n~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~~~~~~~ 556 (919)
|.+...-+ . ...+.+|+.+.+.+|.+... +.+..+..+..+++..|.++.+-. +..+. +|+.+++++|.....
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccc
Confidence 55433322 1 23555556666655544321 122233334444555555553321 22222 255555555553210
Q ss_pred CCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCcc----CcHh-
Q 002458 557 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS----LPSS- 631 (919)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~----lp~~- 631 (919)
...+..+..+..|++.+|++.. -..+...+.+..+.+..|.+.. ....
T Consensus 248 ------------------------~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 248 ------------------------PEGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred ------------------------cccccccccccccchhhccccc---cccccccchHHHhccCcchhcchhhhhcccc
Confidence 0123445555666666655321 1123334455555555554441 1111
Q ss_pred hhccCCCcEEecCcCccC
Q 002458 632 INQLLKLKILCLEKCRNL 649 (919)
Q Consensus 632 l~~l~~L~~L~L~~~~~l 649 (919)
....+.++...+..+..-
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccccccccccccccCccc
Confidence 345566666666666533
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=1.2e-06 Score=95.66 Aligned_cols=57 Identities=21% Similarity=0.528 Sum_probs=25.0
Q ss_pred CCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCC
Q 002458 445 VPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL 507 (919)
Q Consensus 445 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~ 507 (919)
+.+++.|++++| .+..+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc
Confidence 445555555554 2333331 11234555555544444444432 234444444444333
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.9e-09 Score=105.86 Aligned_cols=105 Identities=28% Similarity=0.240 Sum_probs=63.4
Q ss_pred CcEEEEccCCCCc--cccccccCCCCCcEEecCCCCCCCcCCC-CCCCCccceeeccCcccccccc--ccccCcccccee
Q 002458 401 KLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILL 475 (919)
Q Consensus 401 ~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L 475 (919)
.|++|||+++.|+ ++-.-++.+.+|+.|.|.++++...+.. +..-.+|+.|+|+.|+-..+.. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777888888776 4444467778888888887765544332 6667778888888776554432 224566777777
Q ss_pred cccccccccccCcc-cc-CCCCCcEEEecCcC
Q 002458 476 NLKDCRNLVSFPKN-VC-LMKSLKILCLCGCL 505 (919)
Q Consensus 476 ~L~~n~~~~~lp~~-i~-~l~~L~~L~Ls~~~ 505 (919)
||+.|......-.. +. --++|..|+|+||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 77777644332110 10 12345556666653
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.4e-09 Score=103.84 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=78.9
Q ss_pred ccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCc--ccccCCCCCcEeecCCCcccc--cCccccC-C
Q 002458 466 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP--QDLGEVECLEELDVGGTAIRQ--IPPSIVQ-L 540 (919)
Q Consensus 466 l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~L~~n~i~~--lp~~l~~-l 540 (919)
+..+.+|+.|.|.++++...+-..+.+-.+|+.|+|++|+-..+.. -.+.+++.|..|+++.+.+.. +...+.+ -
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3444555555555554444444444455555555555554433321 123455555555555554431 1111111 2
Q ss_pred CCCcEEEeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeee
Q 002458 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAID 619 (919)
Q Consensus 541 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~ 619 (919)
++|+.|+++|+...... ..+.. ...+++|..||||+|..++......+-.++.|++|.
T Consensus 286 e~l~~LNlsG~rrnl~~---------------------sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQK---------------------SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred hhhhhhhhhhhHhhhhh---------------------hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 35666666666521100 00001 234566777777776655544444555666777777
Q ss_pred CCCCCCccCcH---hhhccCCCcEEecCcCc
Q 002458 620 LSGNNFFSLPS---SINQLLKLKILCLEKCR 647 (919)
Q Consensus 620 Ls~n~l~~lp~---~l~~l~~L~~L~L~~~~ 647 (919)
|+.|..- +|. .+...|.|.+|++.+|-
T Consensus 345 lsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 7766432 111 34567778888877773
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=2.9e-06 Score=92.81 Aligned_cols=133 Identities=20% Similarity=0.307 Sum_probs=87.7
Q ss_pred cCCCCCcEEEecCcCCCCcCcccccCCCCCcEeecCC-CcccccCccccCCCCCcEEEeCCCCCCCCCCCcchhhccccc
Q 002458 491 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (919)
Q Consensus 491 ~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~-n~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 569 (919)
..+.+++.|++++| .+..+|. -..+|++|.+++ +.++.+|..+ .++|+.|++++|....
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-------------- 108 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-------------- 108 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--------------
Confidence 34678999999998 4556663 224699999987 4667777655 3689999999885321
Q ss_pred CCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCC-CCCCeeeCCCCCCc---cCcHhhhcc-CCCcEEecC
Q 002458 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL-FSLEAIDLSGNNFF---SLPSSINQL-LKLKILCLE 644 (919)
Q Consensus 570 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l-~~L~~L~Ls~n~l~---~lp~~l~~l-~~L~~L~L~ 644 (919)
.+| ++|+.|+++.+.... +..+ ++|+.|.+.+++.. .+|. .+ ++|++|+++
T Consensus 109 ----------sLP-----~sLe~L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is 164 (426)
T PRK15386 109 ----------GLP-----ESVRSLEIKGSATDS------IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLT 164 (426)
T ss_pred ----------ccc-----cccceEEeCCCCCcc------cccCcchHhheecccccccccccccc---ccCCcccEEEec
Confidence 112 357788887655211 2222 36778877554311 2221 12 589999999
Q ss_pred cCccCCcCCCCCCcccEeeccCC
Q 002458 645 KCRNLKSLPELPPEIVFVGAEDC 667 (919)
Q Consensus 645 ~~~~l~~lp~lp~~L~~L~~~~c 667 (919)
+|..+...+.+|.+|+.|.++.+
T Consensus 165 ~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 165 GCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCcccCcccccccCcEEEeccc
Confidence 99977644469999999998764
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.26 E-value=1.1e-05 Score=83.81 Aligned_cols=145 Identities=18% Similarity=0.170 Sum_probs=87.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
..+.|+|..|+|||.||+++++....+...+.|+.. .+ ....+. .+.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~---------~~~~~~-------------------~~~~~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA---------AAGRLR-------------------DALEAL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH---------hhhhHH-------------------HHHHHH-
Confidence 469999999999999999999987766556677651 11 111000 011112
Q ss_pred CCcEEEEEeCCCCHH---HH-HHHhcCCCC-CCCCcEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHHHHHHH
Q 002458 96 RKRVLVILDDVDQLE---QL-QALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~---~l-~~l~~~~~~-~~~gsrIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~ea~~Lf 161 (919)
.+.-+||+||++... ++ +.+..-... ...|..||+||+.. .+.........+++++++.++..+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 123489999996432 12 122211110 13467799999853 12222233458999999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHhCCchhH
Q 002458 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 192 (919)
.+++....- .-..+....+++++.|-.-+
T Consensus 172 ~~~a~~~~l--~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 172 RERAQRRGL--ALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 998754321 12235667788888765433
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=1.5e-05 Score=80.27 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=94.0
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC---------------------CCeeEEEEechhhhccCC
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ---------------------FEASSFLANVREVSVTRG 60 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~s~~~~ 60 (919)
+.+...+..+ .-...+.++|+.|+||||+|+.+.+.+-.. +....++.. .....+
T Consensus 2 ~~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~ 77 (188)
T TIGR00678 2 QQLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIK 77 (188)
T ss_pred hHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCC
Confidence 3455566543 123678899999999999999999977432 111111110 000001
Q ss_pred hHHHHHHHHHHHhcccCccccchhhhHHHHHH-HHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 002458 61 LVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-H 136 (919)
Q Consensus 61 l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~-~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~ 136 (919)
. +..+++... +.. -..+.+-++|+|+++... ..+.+........+.+.+|++|++. .
T Consensus 78 ~-~~i~~i~~~------------------~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 138 (188)
T TIGR00678 78 V-DQVRELVEF------------------LSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEK 138 (188)
T ss_pred H-HHHHHHHHH------------------HccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHh
Confidence 1 111111111 110 012456789999987653 3555655555445677788777754 2
Q ss_pred hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 137 VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 137 ~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
+... ......+++.+++.++..+.+.+. + .+ .+.+..+++.++|.|.
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCcc
Confidence 2221 122358999999999999998877 1 11 3568899999999885
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=4.1e-05 Score=85.00 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=93.9
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCC-Ce-eEEEEechhhhccCChHHHHHH-HHHHHhccc-Cc
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EA-SSFLANVREVSVTRGLVPLQEQ-LLSEVLMER-DL 78 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~s~~~~l~~l~~~-ll~~~~~~~-~~ 78 (919)
++..++.. +..+.+.++|+.|+||||+|+++++.+...- .. .+++. ..+.... ....+... -........ ..
T Consensus 26 ~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 101 (337)
T PRK12402 26 RLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVEDPRFAHFLGTDKRI 101 (337)
T ss_pred HHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhcCcchhhhhhhhhhh
Confidence 34444443 3445678999999999999999999775432 22 23332 2111100 00000000 000000000 00
Q ss_pred cccchhhhHHHHHHHH-----cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhh-CCCceEEc
Q 002458 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKV 149 (919)
Q Consensus 79 ~~~~~~~~~~~i~~~L-----~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~~-~~~~~~~v 149 (919)
.....+.....++... ...+-+||+||++... ..+.+..........+++|+||... .+.... .....+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~ 181 (337)
T PRK12402 102 RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFF 181 (337)
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEe
Confidence 0000111111111111 1334589999997663 2333333222224567788877543 222211 22347899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.+++.++..+++.+.+...... -..+....++++++|.+-.+.
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 182 RAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred cCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999998876433221 223567888889988765543
No 66
>PRK09087 hypothetical protein; Validated
Probab=98.21 E-value=1.4e-05 Score=82.52 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=85.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+.+.|||..|+|||+|+++++.... ..|++. ......+... +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~----------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANA----------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHh----------------------h
Confidence 45689999999999999999887642 235441 0111111111 1
Q ss_pred cCCcEEEEEeCCCCH----HHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHHHHHHH
Q 002458 95 CRKRVLVILDDVDQL----EQLQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~----~~l~~l~~~~~~~~~gsrIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~ea~~Lf 161 (919)
.+ -+|++||++.. +.+-.+..... ..|..||+|++.. .+........++++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 27888999543 22322322221 3477899988742 23333344568999999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
.+++....- .--+++...+++++.|..-++..
T Consensus 163 ~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 998854321 12236677788888777665553
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.21 E-value=4.1e-05 Score=83.97 Aligned_cols=166 Identities=18% Similarity=0.185 Sum_probs=92.3
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHh-CCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~ 82 (919)
+.+++.. +..+-+.++|++|+||||+|+++++.+. ..|...+.--+ .+...+... .++.+....... ..
T Consensus 25 L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~-vr~~i~~~~~~~-~~--- 94 (319)
T PLN03025 25 LQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDV-VRNKIKMFAQKK-VT--- 94 (319)
T ss_pred HHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHH-HHHHHHHHHhcc-cc---
Confidence 4444443 3344577999999999999999999763 33332211111 111122221 122222111000 00
Q ss_pred hhhhHHHHHHHHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHH
Q 002458 83 VHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 83 ~~~~~~~i~~~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~ 158 (919)
.-.++.-++|+|+++... .-+.+.......+..+++|+++... .+... ..-...++++.+++++..
T Consensus 95 ----------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 95 ----------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred ----------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 002356789999997763 2344433333335678888877543 22111 112347899999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
+.+.+.+-.....- ..+....+++.++|..-
T Consensus 165 ~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 165 GRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 99988875433211 13567888999988653
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.5e-05 Score=85.01 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... .++++........+..++|++|.+.. +... .+-...+++++++.++..+.+.+.+......
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456689999998775 36667666655556778887776543 3222 2224589999999999999988876443211
Q ss_pred ChhHHHHHHHHHHHhCCchhHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal 193 (919)
...+.+..+++.++|.|-.+
T Consensus 198 --i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 198 --TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 12355678899999988543
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.6e-06 Score=69.30 Aligned_cols=59 Identities=24% Similarity=0.176 Sum_probs=27.6
Q ss_pred ccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcC
Q 002458 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (919)
Q Consensus 447 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~ 505 (919)
+|++|++++|.+...-+..+.++++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555543332222344445555555555544444444444555555555555543
No 70
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.19 E-value=2.8e-05 Score=91.04 Aligned_cols=221 Identities=14% Similarity=0.125 Sum_probs=110.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC-----CC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~ 87 (919)
..++.|+|++|.|||+.++.|.+++... .+ .++++. ... -.....+...+..++............+..
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---Lstp~sIYqvI~qqL~g~~P~~GlsS~evL 856 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---VVHPNAAYQVLYKQLFNKKPPNALNSFKIL 856 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc---cCCHHHHHHHHHHHHcCCCCCccccHHHHH
Confidence 4678899999999999999999876421 12 133443 221 123344455555554333222222233334
Q ss_pred HHHHHHHc---CCcEEEEEeCCCCHH--HHHHHhcCCCCC-CCCcEEEE--EeCCh--------hhHhhhCCCceEEcCC
Q 002458 88 NLIRWRLC---RKRVLVILDDVDQLE--QLQALVGNHDWF-GFGSRIII--TSRDE--------HVLKSHGVTNTYKVRG 151 (919)
Q Consensus 88 ~~i~~~L~---~kk~LlVlDdv~~~~--~l~~l~~~~~~~-~~gsrIIi--TTR~~--------~~~~~~~~~~~~~v~~ 151 (919)
..+.+.+. ....+||||+||... +-+.|..-+.|. ..+++|+| +|.+- .+...++ ...+..++
T Consensus 857 erLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~P 935 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSP 935 (1164)
T ss_pred HHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCC
Confidence 44444442 224689999997654 112222111111 24566554 34321 1111122 22466799
Q ss_pred CCHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHhCC-chhHHHHHHhhcc--C---CCHHHHHHHHHHHhcCCChhHH
Q 002458 152 LDYVEALQLFHLKVSNG-KQPTDYRVELSKYVVNYAGG-LPLAIEVLGSFLC--G---RSVEEWKSALNRLQEAPNEKVL 224 (919)
Q Consensus 152 L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~i~~~~~G-lPLal~~l~~~L~--~---~~~~~w~~~l~~l~~~~~~~i~ 224 (919)
.+.+|-.+++..++... ...+++..+++.+.+....| .=.||.++-.... + ...+..+.+.+++..
T Consensus 936 YTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~------- 1008 (1164)
T PTZ00112 936 YKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFD------- 1008 (1164)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHh-------
Confidence 99999999999998532 12233333333332223444 4455555433322 1 123334444433321
Q ss_pred HHHHhhhccCChhhHHHhhhhcc
Q 002458 225 KVLRISYDGLDRRDKEIFLDIAC 247 (919)
Q Consensus 225 ~~l~~sy~~L~~~~k~~fl~~a~ 247 (919)
..+.-....||.+.|.+++.++.
T Consensus 1009 srI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 1009 SPLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred hhHHHHHHcCCHHHHHHHHHHHH
Confidence 12233446788877766664443
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.19 E-value=1.2e-05 Score=89.94 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=86.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhH-HHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI-NLIRWR 93 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~-~~i~~~ 93 (919)
.+-|.++|++|+|||++|+++++.....|-... ...+....... ..... ..++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-------------~~~l~~~~~g~-----------~~~~i~~~f~~a 211 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------------GSELVRKYIGE-----------GARLVREIFELA 211 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-------------hHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 456899999999999999999998765432110 01111111111 00111 112222
Q ss_pred HcCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChh-----hHhhhCCCceEEcC
Q 002458 94 LCRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEH-----VLKSHGVTNTYKVR 150 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~-----~~~~~~~~~~~~v~ 150 (919)
-...+.+|++|++|... .+..+......+ ..+.+||.||.... +......+..++++
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 23467899999987541 133333322211 24678888888543 22222346689999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHhCCch
Q 002458 151 GLDYVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLP 190 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 190 (919)
..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 9999999999999886544332 12 345666776653
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=1.5e-05 Score=76.28 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=59.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+.+.|+|.+|+||||+|+++++.+...-..++++. ..+...... .. ..... . .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~---~~-~~~~~-~-----------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLV---VA-ELFGH-F-----------LVRLLFELA 80 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhH---HH-HHhhh-h-----------hHhHHHHhh
Confidence 4568899999999999999999998754333444443 221111100 00 00000 0 001111222
Q ss_pred HcCCcEEEEEeCCCCH-----HHHHHHhcCCCCC---CCCcEEEEEeCChh
Q 002458 94 LCRKRVLVILDDVDQL-----EQLQALVGNHDWF---GFGSRIIITSRDEH 136 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~-----~~l~~l~~~~~~~---~~gsrIIiTTR~~~ 136 (919)
...++.++|+||++.. ..+.......... ..+.+||+||.+..
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999864 2233333333221 36789999988653
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=6.6e-05 Score=87.66 Aligned_cols=99 Identities=9% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChhhHh-h-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEHVLK-S-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~~~~-~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
++.-++|||+++.... +..|+..+.......++|+||++.+-.. . ..-...++++.++.++..+.+.+.+.....
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 4556888999987754 6666665554456889898888764332 1 123468999999999999999887743322
Q ss_pred ChhHHHHHHHHHHHhCCch-hHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLP-LAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlP-Lal~~l 196 (919)
....+..+.|++.++|.. -|+..+
T Consensus 197 -~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 197 -AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122356778899998854 455543
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.5e-05 Score=88.69 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=94.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhC--CCCeeEEEEechh-hhc--cCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVRE-VSV--TRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~-~s~--~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
...+.++|++|+||||+|+.+++.+.. .+...|+.+.... +.. ..++..+ .........+..+....
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el--------~~~~~~~vd~iR~l~~~ 107 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI--------DAASNNSVEDVRDLREK 107 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe--------cccccCCHHHHHHHHHH
Confidence 466799999999999999999997642 2333444432110 000 0000000 00000001111111111
Q ss_pred HHH-HHcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHH
Q 002458 90 IRW-RLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 90 i~~-~L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
+.. -..+++-++|+|+++.. ..++.+........+...+|++|... .+... ......+++..++.++..+.+.+.
T Consensus 108 ~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i 187 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRL 187 (504)
T ss_pred HhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHH
Confidence 111 12245678899999765 34666666555444566666666543 33222 123458999999999999999988
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 165 VSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 165 a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
+...... ...+....|++.++|.+--+
T Consensus 188 ~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 188 LEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 7543322 12356788999999987544
No 75
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=5.2e-05 Score=79.04 Aligned_cols=148 Identities=15% Similarity=0.206 Sum_probs=88.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+.+.|+|+.|+|||+||+++++....+-..+.|+. ..... ....+ +.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~~~----------------------~~~~ 94 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFVPE----------------------VLEG 94 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhhHH----------------------HHHH
Confidence 3467899999999999999999997765544556665 11100 00000 1111
Q ss_pred HcCCcEEEEEeCCCCH---HHHH----HHhcCCCCCCCC-cEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHH
Q 002458 94 LCRKRVLVILDDVDQL---EQLQ----ALVGNHDWFGFG-SRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVE 156 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~---~~l~----~l~~~~~~~~~g-srIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~e 156 (919)
+.+ --+|++||++.. .+|+ .+..... ..| .++|+||+.. .+...+....+++++++++++
T Consensus 95 ~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 95 MEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred hhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 111 137889999654 2222 1111111 123 4799999854 222223344689999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 157 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
-.+.+.+++.... -.--++....+++++.|..-++..
T Consensus 172 ~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 172 KLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 9999988774332 112246778888888876555443
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=3.1e-05 Score=80.62 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=89.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+.+.|||..|+|||.||+++++.+..+-..++|+.. .+ +.. . ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~---------~~~----~---------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE---------LLD----R---------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH---------HHh----h---------------hHHHHHhh
Confidence 3678999999999999999999977655456677651 11 110 0 01122233
Q ss_pred cCCcEEEEEeCCCCH---HHHHH-HhcCCCC-CCCCcEEEEEeCChhh-H--------hhhCCCceEEcCCCCHHHHHHH
Q 002458 95 CRKRVLVILDDVDQL---EQLQA-LVGNHDW-FGFGSRIIITSRDEHV-L--------KSHGVTNTYKVRGLDYVEALQL 160 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~---~~l~~-l~~~~~~-~~~gsrIIiTTR~~~~-~--------~~~~~~~~~~v~~L~~~ea~~L 160 (919)
.+-. ++|+||++.. .+++. +..-.+. ...|.+||+|++...- . .......+++++++++++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3323 6788999633 23222 2221111 1347789998885321 1 1122335789999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 161 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
+.+++..... .-.++....+++++.|-.-++..+
T Consensus 175 l~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 9977644321 112367778888887765554443
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.2e-06 Score=68.56 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCcEEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCc-cccCCCCCcEEEeCCCC
Q 002458 495 SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (919)
Q Consensus 495 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~~~ 552 (919)
+|++|++++|.+...-+..|.++++|++|++++|.++.+|+ .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555554433333445555555555555555554443 44555555555555553
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=9e-05 Score=88.27 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=67.2
Q ss_pred cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|+|+++.. ...+.|+..+.......++|++|.+.+ +... ..-...|+++.++.++..+++.+.+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 467789999999766 456777666654456777777766643 3322 12246899999999999999988764322
Q ss_pred CChhHHHHHHHHHHHhCCchhHHH
Q 002458 171 PTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.....+....|++.++|.|--+.
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12233567889999999885433
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00022 Score=82.47 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=96.5
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHH----Hh---ccc
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE----VL---MER 76 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~----~~---~~~ 76 (919)
|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.... .. ....+.....+.+... +. ...
T Consensus 27 L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-----~~pCg~C~sC~~I~~g~hpDviEIDAAs 96 (702)
T PRK14960 27 LSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-----STPCEVCATCKAVNEGRFIDLIEIDAAS 96 (702)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-----CCCCccCHHHHHHhcCCCCceEEecccc
Confidence 34444432 22478899999999999999999997632210 00 0000100111111100 00 000
Q ss_pred CccccchhhhHHHHHH-HHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChhhHh-h-hCCCceEEcCC
Q 002458 77 DLIIWDVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEHVLK-S-HGVTNTYKVRG 151 (919)
Q Consensus 77 ~~~~~~~~~~~~~i~~-~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~~~~-~-~~~~~~~~v~~ 151 (919)
.....+..+.+..+.. -..+++-++|+|+++... ...++...+.....+.++|++|.+.+-.. . ......++++.
T Consensus 97 ~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkp 176 (702)
T PRK14960 97 RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRP 176 (702)
T ss_pred cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccC
Confidence 0000111111111110 123566789999998763 45566555544446778888887753222 1 13346899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 152 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
++.++..+.+.+.+.+... ....+....|+++++|.+-.+
T Consensus 177 Ls~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 177 LAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999999887744322 122355678999999976443
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=7.9e-08 Score=101.90 Aligned_cols=254 Identities=17% Similarity=0.211 Sum_probs=135.5
Q ss_pred ccCCCCCcEEecCCCCCCCcCCC--C-CCCCccceeeccCcccccccc--ccccCccccceecccccccccc--cCcccc
Q 002458 419 IKPLKELKFMNLSHSCNLIRTPD--F-TGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILLNLKDCRNLVS--FPKNVC 491 (919)
Q Consensus 419 ~~~l~~L~~L~Ls~n~~~~~~~~--~-~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L~L~~n~~~~~--lp~~i~ 491 (919)
...+++++.|++.+|..++...- + ..+++|++|+|..|..+.... .-...+++|.+|++++|..... +..-..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 45677777777777764443321 2 246777888887776554332 1224577888888888765433 111123
Q ss_pred CCCCCcEEEecCcCCCCc--CcccccCCCCCcEeecCCC-cccccC--ccccCCCCCcEEEeCCCCCCCCCCCcchhhcc
Q 002458 492 LMKSLKILCLCGCLKLEK--LPQDLGEVECLEELDVGGT-AIRQIP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLS 566 (919)
Q Consensus 492 ~l~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~L~~n-~i~~lp--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 566 (919)
+++.|+.+.+.||.-.+. +-..-+.+..+..+++..+ .++... ..-..+..|+.|+.++|......
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~--------- 310 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE--------- 310 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH---------
Confidence 455566776667654331 1111122333444454443 233211 11134667777777777642211
Q ss_pred cccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCCCCccc-CCCCCCCeeeCCCCCCc---cCcHhhhccCCCcEE
Q 002458 567 LLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNNFF---SLPSSINQLLKLKIL 641 (919)
Q Consensus 567 l~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L 641 (919)
.+.. -.+.++|+.|.++.|..+++.-...+ .+.+.|+.+++.++... ++-.--.+++.|+.|
T Consensus 311 -------------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 311 -------------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred -------------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 0111 23456778888887775443332233 35677888888777543 233233567788888
Q ss_pred ecCcCccCCcCC--------CCCCcccEeeccCCCccceecccccccCCCCceeEecccccchhhhhhhhHH
Q 002458 642 CLEKCRNLKSLP--------ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 705 (919)
Q Consensus 642 ~L~~~~~l~~lp--------~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~l~ls~N~l 705 (919)
.|++|...+.-. .--..+..+.+++|+..+.-.+.. +.+|++|+.+++-..+-
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----------l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-----------LSICRNLERIELIDCQD 438 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH-----------HhhCcccceeeeechhh
Confidence 888877654431 111344555555555544433322 46677777766655543
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=2.3e-05 Score=81.83 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=80.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
+...-+.+||++|+||||||+.+...-+.+ ...|+.-........+++.+.++--. ..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~ife~aq~--------------------~~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDIFEQAQN--------------------EK 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHHHHHHHH--------------------HH
Confidence 567778899999999999999999865443 24555522111222222222222111 12
Q ss_pred HHcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCChhhHh---hhCCCceEEcCCCCHHHHHHHHHHH
Q 002458 93 RLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEHVLK---SHGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIi--TTR~~~~~~---~~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
.+..+|..+.+|.|+.. .|-+.+++.. ..|.-++| ||.++...- ...-..++-++.|+.++-..++.+-
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 35578899999999554 3455555543 46777776 777764311 1233458899999999999988874
No 82
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.0002 Score=78.28 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=96.1
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhC------CCCeeEEEEechhhhccCChHHHHHHHHHHHhcccC
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~ 77 (919)
+...+..+ .-.+...++|+.|+||||+|+++++.+-. +.|...|... .....++.++ +++...+. .
T Consensus 16 l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~i-r~~~~~~~-~-- 87 (313)
T PRK05564 16 IKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDDI-RNIIEEVN-K-- 87 (313)
T ss_pred HHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHHH-HHHHHHHh-c--
Confidence 44444332 23467789999999999999999997632 2232233220 0011122221 11222110 0
Q ss_pred ccccchhhhHHHHHHHHcCCcEEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-hCCCceEEcCCCC
Q 002458 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVD--QLEQLQALVGNHDWFGFGSRIIITSRDEHVL-KS-HGVTNTYKVRGLD 153 (919)
Q Consensus 78 ~~~~~~~~~~~~i~~~L~~kk~LlVlDdv~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~-~~-~~~~~~~~v~~L~ 153 (919)
.-..+++-++|+|+++ +.....++...+....+++.+|++|.+.+.+ .. ..-...+++..++
T Consensus 88 --------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~ 153 (313)
T PRK05564 88 --------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS 153 (313)
T ss_pred --------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC
Confidence 0012344555666654 4455777777776666789999888765432 21 2234689999999
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
.++..+.+.+...+ .+ .+.+..++.+++|.|..+...
T Consensus 154 ~~~~~~~l~~~~~~---~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 154 KEEIEKFISYKYND---IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99998888765421 11 234677899999988655433
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=3.6e-05 Score=79.09 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=88.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~ 91 (919)
....+.|||..|+|||.|.+++++.+..... .++++. . .+....+...+-. .....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHHHHHHHHHc----------ccchhhh
Confidence 3456789999999999999999998765433 355554 1 1222233332111 1234555
Q ss_pred HHHcCCcEEEEEeCCCCHH---HHH-HHhcCCC-CCCCCcEEEEEeCCh-h--------hHhhhCCCceEEcCCCCHHHH
Q 002458 92 WRLCRKRVLVILDDVDQLE---QLQ-ALVGNHD-WFGFGSRIIITSRDE-H--------VLKSHGVTNTYKVRGLDYVEA 157 (919)
Q Consensus 92 ~~L~~kk~LlVlDdv~~~~---~l~-~l~~~~~-~~~~gsrIIiTTR~~-~--------~~~~~~~~~~~~v~~L~~~ea 157 (919)
+.+++-. +|++||++... .++ .+..-.. ....|-+||+|++.. . +.......-+++++.+++++.
T Consensus 93 ~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 93 DRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 6666444 56789986542 121 1111111 013477999999643 1 122223345899999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 158 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.+++.++|....-. --++++..+++++.+..-.|.
T Consensus 172 ~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 172 RRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 99999988543322 233566667777665554443
No 84
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=5.7e-05 Score=87.58 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=94.9
Q ss_pred hHHHHhHhcCC--CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCcc
Q 002458 2 EKMNGYLEAGL--DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (919)
Q Consensus 2 ~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~ 79 (919)
+++.+|+..-. ...+.+.|+|++|+||||+|+++++.+. |+. +-+. . +.... .....+++.......
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~r~-~~~i~~~i~~~~~~~--- 92 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQRT-ADVIERVAGEAATSG--- 92 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---ccccc-HHHHHHHHHHhhccC---
Confidence 34556655321 2268899999999999999999999873 222 1121 1 11111 122222322211100
Q ss_pred ccchhhhHHHHHHHHcCCcEEEEEeCCCCHH------HHHHHhcCCCCCCCCcEEEEEeCChh-hHh--hhCCCceEEcC
Q 002458 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDEH-VLK--SHGVTNTYKVR 150 (919)
Q Consensus 80 ~~~~~~~~~~i~~~L~~kk~LlVlDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~--~~~~~~~~~v~ 150 (919)
.....++.+||+|+++... .++.+..... ..+..||+|+.+.. ... .......++++
T Consensus 93 ------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~ 158 (482)
T PRK04195 93 ------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFK 158 (482)
T ss_pred ------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEec
Confidence 0111367899999997753 2444433322 23455777765432 111 11234578999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.++.++....+.+.+...... ...+....|++.++|..-.+.
T Consensus 159 ~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999988877543322 123567889999988665444
No 85
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=7.4e-08 Score=108.15 Aligned_cols=177 Identities=26% Similarity=0.212 Sum_probs=106.2
Q ss_pred hhhhcCCCCCcEEEecCcccCC--CccccCCCcceEEeeCC----------CCCCCCCCCCCCCcEEEEccCCCCccccc
Q 002458 350 AKSFSTMSNLRLLEINNLYSSG--NLEYLSNNLRYLKWHEY----------PFNSLPVSFRPEKLFKLNLCNSRIKYLWK 417 (919)
Q Consensus 350 ~~~f~~l~~L~~L~l~~~~l~~--~~~~~~~~L~~L~~~~~----------~~~~lp~~~~~~~L~~L~L~~n~i~~l~~ 417 (919)
+-.+..++.||.|.+.++.+.. ++..+-..|..|-..+- -.-.+...+.-..|.+.+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 4455678899999999887653 12122222322221110 01112222233467777777888777777
Q ss_pred cccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCccccccccc-cccCccccceecccccccccccCccccCCCCC
Q 002458 418 GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQ-SVGTLKRLILLNLKDCRNLVSFPKNVCLMKSL 496 (919)
Q Consensus 418 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L 496 (919)
++.-++.|+.|||++|++...- .+..++.|++|||+.|. +..+|. +...+. |+.|++++|.. ..+- .+.+|++|
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l-~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNAL-TTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHH-Hhhh-hHHhhhhh
Confidence 7777788888888888655433 56677788888888765 334442 233333 78888887763 3333 26678888
Q ss_pred cEEEecCcCCCCcC-cccccCCCCCcEeecCCCccc
Q 002458 497 KILCLCGCLKLEKL-PQDLGEVECLEELDVGGTAIR 531 (919)
Q Consensus 497 ~~L~Ls~~~~~~~l-p~~l~~l~~L~~L~L~~n~i~ 531 (919)
+.||+++|-+.+.- -..+..+..|+.|+|.||.+-
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888886554321 122455667778888887664
No 86
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00011 Score=83.92 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=97.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
.-+.|+|..|+|||.|++++++.+.... ..++++. ..++...+...+... ......+++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 4588999999999999999999765432 2344543 122333333332110 0123344444
Q ss_pred HcCCcEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHHHHH
Q 002458 94 LCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQ 159 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~ea~~ 159 (919)
+++ .-+||+||++... . .+.+..-+.. ...|..||+|+... ++...+...-++++++++.++..+
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 4478889996542 1 2222221110 13456788887642 122222334578899999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 002458 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (919)
Q Consensus 160 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 197 (919)
++.+++-.......-.++....|++.+.|.|-.+.-+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99998854321112335778889999999987776544
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00033 Score=80.12 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... +.+.+............+|++|.+ ..+... ......+++.+++.++....+.+.+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 466799999998663 355665555433445555555444 333222 1234589999999999999988877433211
Q ss_pred ChhHHHHHHHHHHHhCC-chhHHHHHHh
Q 002458 172 TDYRVELSKYVVNYAGG-LPLAIEVLGS 198 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~G-lPLal~~l~~ 198 (919)
-..+....++++++| .+.|+..+-.
T Consensus 196 --i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 --IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred --CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 123556778887765 4666666644
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.03 E-value=0.0003 Score=84.29 Aligned_cols=149 Identities=25% Similarity=0.353 Sum_probs=86.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
+....+.++|++|+||||+|+.+++.....|. .+.. + ..++.++ ++. .....+
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna----~-~~~i~di-r~~------------------i~~a~~ 102 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA----V-LAGVKDL-RAE------------------VDRAKE 102 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh----h-hhhhHHH-HHH------------------HHHHHH
Confidence 44556789999999999999999998765542 1211 0 0111111 111 111111
Q ss_pred HH--cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEE--eCChh--hHhh-hCCCceEEcCCCCHHHHHHHHHH
Q 002458 93 RL--CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIIT--SRDEH--VLKS-HGVTNTYKVRGLDYVEALQLFHL 163 (919)
Q Consensus 93 ~L--~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiT--TR~~~--~~~~-~~~~~~~~v~~L~~~ea~~Lf~~ 163 (919)
.+ .+++.++|+||++.. .+.+.+..... .|+.++|+ |.+.. +... ..-..++++++++.++...++.+
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 11 246779999999754 45666665432 45656653 44331 1111 11235799999999999999988
Q ss_pred HhcCC-----CCCChhHHHHHHHHHHHhCCchh
Q 002458 164 KVSNG-----KQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 164 ~a~~~-----~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
.+-.. .....-..+....+++++.|..-
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 76410 11112234567888888888643
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=3.5e-05 Score=80.22 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=87.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+.+.|+|..|+|||+||+++++.....-....++.. .... .. + ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~~---------~~-~----------------------~~ 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASPL---------LA-F----------------------DF 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHhH---------HH-H----------------------hh
Confidence 34678899999999999999999976433334455541 1100 00 0 01
Q ss_pred HcCCcEEEEEeCCCCHH--HHHHHhcCCCC-CCCCc-EEEEEeCChhhHh--------hhCCCceEEcCCCCHHHHHHHH
Q 002458 94 LCRKRVLVILDDVDQLE--QLQALVGNHDW-FGFGS-RIIITSRDEHVLK--------SHGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~--~l~~l~~~~~~-~~~gs-rIIiTTR~~~~~~--------~~~~~~~~~v~~L~~~ea~~Lf 161 (919)
. ...-+||+||++... +.+.+...... ...|. .||+|++...... .......++++++++++-.+++
T Consensus 88 ~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 1 123368889996542 22222221110 02344 4666666432111 1222358899999999887877
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhc
Q 002458 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (919)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 200 (919)
.+.+-.... .-.++..+.+++...|++..+..+-..+
T Consensus 167 ~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 765532221 1123567778888999998877665543
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.00 E-value=1.2e-05 Score=86.97 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=62.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC-CCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc-----hhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD-----VHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~-----~~~~~~~ 89 (919)
+.++|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++++...+....-..... .......
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997654 79999999877663 2367777877764332221111110 1112222
Q ss_pred HHHH-HcCCcEEEEEeCCCCHHH
Q 002458 90 IRWR-LCRKRVLVILDDVDQLEQ 111 (919)
Q Consensus 90 i~~~-L~~kk~LlVlDdv~~~~~ 111 (919)
.+.. ..+++++|++|++.....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHH
Confidence 2222 357999999999966654
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00022 Score=80.20 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=91.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCC---eeEEEEechhhhccCChHHHHHHHHHHHhc---ccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE---ASSFLANVREVSVTRGLVPLQEQLLSEVLM---ERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~---~~~~~~~~~~~~~~~ 89 (919)
+.+.++|+.|+||||+|+.+++.+-..-. ..|..+. ....+......++.. .......+..+....
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~ 112 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEITKGISSDVLEIDAASNRGIENIRELRDN 112 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHHHccCCccceeechhhcccHHHHHHHHHH
Confidence 56789999999999999999997643211 0111110 000000000000000 000001111111111
Q ss_pred HHH-HHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHH
Q 002458 90 IRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 90 i~~-~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
+.. ...+++.++|+|+++... .+++|+...........+|.+|.+. .+... ..-...|.+..++.++..+.+.+.
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHH
Confidence 111 123567789999997664 4777776665444566666555543 33222 123458999999999999998887
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 165 VSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 165 a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
+..... ....+....|++.++|.+-
T Consensus 193 ~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 193 CKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 643321 1233567889999999874
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.1e-05 Score=85.37 Aligned_cols=98 Identities=9% Similarity=0.088 Sum_probs=65.6
Q ss_pred cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|+|+++... ....|+..+..-..+.++|++|.+. .+... ..-...++++.++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 3566789999997764 4777777666555677777666654 33322 122458999999999999998877643221
Q ss_pred CChhHHHHHHHHHHHhCCchhHHH
Q 002458 171 PTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
. ...+..+.|++.++|.|....
T Consensus 202 ~--~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 202 A--HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHH
Confidence 1 123456788999999885433
No 93
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.99 E-value=0.00034 Score=77.02 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~ 82 (919)
.+..++.. ...+.+.++|..|+||||+|+.+++.+........++. .. .+...+...+. +.+........
T Consensus 28 ~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~~~-~~i~~~~~~~~----- 97 (319)
T PRK00440 28 RLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDVIR-NKIKEFARTAP----- 97 (319)
T ss_pred HHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHHHH-HHHHHHHhcCC-----
Confidence 34445543 33445799999999999999999997643321111221 00 01111111111 11111110000
Q ss_pred hhhhHHHHHHHHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHH
Q 002458 83 VHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 83 ~~~~~~~i~~~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~ 158 (919)
.....+-+|++|+++... ..+.+........+.+++|+++... .+... ......+++++++.++..
T Consensus 98 ----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~ 167 (319)
T PRK00440 98 ----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVA 167 (319)
T ss_pred ----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHH
Confidence 001345688999987553 2344444333334567788777532 22111 112347899999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
..+.+.+...... -..+....+++.++|.+--+
T Consensus 168 ~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 168 ERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 9998887543321 12356778899999987553
No 94
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.98 E-value=8.2e-06 Score=84.93 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=61.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhC-CCCeeEEEEechhhhccCChHHHHHHHHHHHhccc-Cccc----cchhhhHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER-DLII----WDVHKGIN 88 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~-~~~~----~~~~~~~~ 88 (919)
-..++|.|++|+|||||++++++.+.. +|+..+|+..+.+. ...+.++++++...+.... +... .-......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999997643 68999998865432 2467788888733322111 1111 11112223
Q ss_pred HHHHH-HcCCcEEEEEeCCCCHHH
Q 002458 89 LIRWR-LCRKRVLVILDDVDQLEQ 111 (919)
Q Consensus 89 ~i~~~-L~~kk~LlVlDdv~~~~~ 111 (919)
..+.. -.++++++++|++....+
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhh
Confidence 33332 347899999999866543
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00013 Score=84.24 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=63.8
Q ss_pred cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|+|+++... ..+.|...+......+++|++|-+. .+... ..-...++++.++.++..+.+.+.+.....
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 3567799999997654 4666666555444567777655554 33322 223468999999999998888876543221
Q ss_pred CChhHHHHHHHHHHHhCCchh-HHHHH
Q 002458 171 PTDYRVELSKYVVNYAGGLPL-AIEVL 196 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPL-al~~l 196 (919)
....+....+++.++|.+- |+..+
T Consensus 197 --~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 --NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1223556778889998653 44444
No 96
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=5.3e-06 Score=84.34 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcH--hhhccCCCcEEecCcCccCCcCCCCCCcccEeec
Q 002458 587 LSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRNLKSLPELPPEIVFVGA 664 (919)
Q Consensus 587 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~ 664 (919)
++++..+-+..|.+.+..-......++.+..|+|+.|++.+..+ .+..++.|..|.+++++....+.. ..=+.|-+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llI 275 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLI 275 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEE
Confidence 57788888888876554555566778888899999999985542 678899999999999886655542 11122334
Q ss_pred cCCCccceec
Q 002458 665 EDCTSLETIS 674 (919)
Q Consensus 665 ~~c~~L~~l~ 674 (919)
...++++.|+
T Consensus 276 aRL~~v~vLN 285 (418)
T KOG2982|consen 276 ARLTKVQVLN 285 (418)
T ss_pred eeccceEEec
Confidence 4444444443
No 97
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=8e-08 Score=107.87 Aligned_cols=98 Identities=23% Similarity=0.184 Sum_probs=41.7
Q ss_pred cceeeccCccccccccccccCccccceecccccccccccCccccCCCCCcEEEecCcCCCCcCcc-cccCCCCCcEeecC
Q 002458 448 LERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVG 526 (919)
Q Consensus 448 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~L~ 526 (919)
|...+.+.| .+..+..++.-++.|+.|||++|++...- .+..++.|++|||++|.+. .+|. ....+. |..|.++
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 333444432 23444445555555555555555543321 2334455555555554332 2221 111122 4444444
Q ss_pred CCcccccCccccCCCCCcEEEeCCC
Q 002458 527 GTAIRQIPPSIVQLVNLKIFSLHGC 551 (919)
Q Consensus 527 ~n~i~~lp~~l~~l~~L~~L~L~~~ 551 (919)
+|.++++- .+.+|++|+.||++.|
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHh
Confidence 44444432 2444444444444443
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.91 E-value=0.00045 Score=78.52 Aligned_cols=156 Identities=14% Similarity=0.181 Sum_probs=90.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+.|+|..|+|||.||+++++.+..+.. .++|+. . .+...++...+... ....+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~----------~~~~~~~~ 196 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN----------KMEEFKEK 196 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC----------CHHHHHHH
Confidence 56889999999999999999998765542 344543 1 12222333332111 12333444
Q ss_pred HcCCcEEEEEeCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCC-hhhHh--------hhCCCceEEcCCCCHHHHHH
Q 002458 94 LCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRD-EHVLK--------SHGVTNTYKVRGLDYVEALQ 159 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~-~~~~~--------~~~~~~~~~v~~L~~~ea~~ 159 (919)
+++ .-+||+||++... . .+.+...+.. ...|..+||||.. ..... .+.....+++++.+.++..+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 2378899996532 1 1122211110 0235567887764 22211 12223478999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 160 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
++.+.+...... -.++....+++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 999988543221 124667788888888765444
No 99
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00082 Score=77.20 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=63.9
Q ss_pred cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CChhhHhhh-CCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITS-RDEHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT-R~~~~~~~~-~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|+|+++.. ..++.|...+....+.+.+|++| +.+.+.... .....++++.++.+|..+.+.+.+.....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356778999999875 34667766555445667766544 444443322 23358999999999999999988854332
Q ss_pred CChhHHHHHHHHHHHhCCchhH
Q 002458 171 PTDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPLa 192 (919)
. ...+....|++.++|.+--
T Consensus 206 ~--ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 206 K--TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred C--CCHHHHHHHHHHcCCCHHH
Confidence 1 1234567788899997643
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00042 Score=81.01 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++.... ...|+..+.......++|++|.+.+ +... .+....++++.++.++..+.+.+.+-+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4667899999987653 4445444433345677887776653 2211 1223478889999999999998877543321
Q ss_pred ChhHHHHHHHHHHHhCCchhHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
...+....|+++++|.+.-+.
T Consensus 198 --id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 --YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred --cCHHHHHHHHHHhCCCHHHHH
Confidence 223567889999999875433
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00018 Score=80.21 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ....+........++..+|++|.+. .+... ..-...+.++.++.++..+.+.+... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C
Confidence 345577889997764 3444555444335577777766664 33322 22346899999999999998875431 1
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
+ .+.+..++..++|.|.....+
T Consensus 192 ~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 245678899999999654443
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=0.00015 Score=81.38 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=83.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHH-HHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN-LIRW 92 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~-~i~~ 92 (919)
..+-|.++|++|+|||++|+++++.....|- .+. .. + +.....+ ....... .+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~---------~----l~~~~~g-------~~~~~i~~~f~~ 219 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS---------E----LVQKFIG-------EGARLVRELFEL 219 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH---------H----HhHhhcc-------chHHHHHHHHHH
Confidence 3567899999999999999999998754321 111 11 1 1111000 0011111 1222
Q ss_pred HHcCCcEEEEEeCCCCHH------------H----HHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCceEEc
Q 002458 93 RLCRKRVLVILDDVDQLE------------Q----LQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNTYKV 149 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~------------~----l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~~~v 149 (919)
.-...+.+|++|++|... + +..+......+ ..+.+||.||........ ...+..+++
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 223467899999997641 1 22233222211 235678888875433221 234568999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHhCCc
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGL 189 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 189 (919)
+..+.++..++|+.+..+..... .+ ...+++.+.|.
T Consensus 300 ~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 99999999999998875443222 22 34455566664
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.89 E-value=0.00022 Score=82.08 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=101.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
..-+.|+|..|+|||+||+++++.+..++. .+.|+. . .++..++...+. . .....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~-~---------~~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALR-N---------NTMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHH-c---------CcHHHHHH
Confidence 356889999999999999999998876653 244443 1 112223333221 1 01233444
Q ss_pred HHcCCcEEEEEeCCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCCh-hh--------HhhhCCCceEEcCCCCHHHHH
Q 002458 93 RLCRKRVLVILDDVDQLE----QLQALVGNHDW-FGFGSRIIITSRDE-HV--------LKSHGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~-~~--------~~~~~~~~~~~v~~L~~~ea~ 158 (919)
.+++ .-+||+||++... ..+.+...+.. ...|..|||||... .. .........+++++.+.++..
T Consensus 208 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 4443 4478899996431 11222211100 12355688877643 11 112233357999999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH----HHhh--ccC--CCHHHHHHHHHHH
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV----LGSF--LCG--RSVEEWKSALNRL 215 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~----l~~~--L~~--~~~~~w~~~l~~l 215 (919)
+++.+.+..... .-.++....|++.+.|..-.+.- +..+ +.+ -+.+..+++++.+
T Consensus 287 ~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 287 AILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999854221 12236678888888887654332 2221 112 2556666666654
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.88 E-value=0.00096 Score=74.62 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++.. .....+........+.+.+|++|.+.. +... ......+++.+++.++..+++..++-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568889998766 445566555544455677777776543 2222 1223578999999999999998877543321
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
...+.+..+++.++|.|..+...
T Consensus 196 --i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 196 --IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred --CCHHHHHHHHHHcCCChHHHHHH
Confidence 12356778889999988665543
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00039 Score=78.54 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=91.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC--CCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc------cccchhhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL------IIWDVHKG 86 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~------~~~~~~~~ 86 (919)
...+.++|+.|+||||+|+.+++.+... ++..-|..+. ....+......++... ...+. .....++.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~~~~~--~~~n~~~~~~~~~~~id~I 112 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRDFDAG--TSLNISEFDAASNNSVDDI 112 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHHHhcC--CCCCeEeecccccCCHHHH
Confidence 3568899999999999999999977432 1111111100 0011111111111110 00000 00001111
Q ss_pred HHHHHHHH-----cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeC-ChhhHhhh-CCCceEEcCCCCHHHH
Q 002458 87 INLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSR-DEHVLKSH-GVTNTYKVRGLDYVEA 157 (919)
Q Consensus 87 ~~~i~~~L-----~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR-~~~~~~~~-~~~~~~~v~~L~~~ea 157 (919)
. .+.+.+ .+++-++|+|+++... .++.+........+.+.+|++|. ...+.... .....++++.++.++.
T Consensus 113 r-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei 191 (397)
T PRK14955 113 R-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEI 191 (397)
T ss_pred H-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHH
Confidence 1 122222 2456688999997653 46666555544455777766554 33333321 1234789999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 158 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
.+.+...+-.... .-..+.+..+++.++|.+--+
T Consensus 192 ~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 192 QQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 9888877643221 122366788999999977533
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00078 Score=74.56 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+.+.++|+|+++... ....|...+.....+..+|++|.+.+ +... ......+.+.+++.++..+++.+.... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 466789999987654 34455444433345677777777653 3222 233568999999999999999876421 1
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l~ 197 (919)
.+ +....+++.++|.|.....+.
T Consensus 217 ~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 PD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CH---HHHHHHHHHcCCCHHHHHHHh
Confidence 11 122678999999998665543
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00013 Score=83.06 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=91.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
..-+.|||.+|+|||+||+++++.+..... .+.|+. . .+...++...+... ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc----------cHHHHHH
Confidence 345899999999999999999998765543 345554 1 12233333332110 1223444
Q ss_pred HHcCCcEEEEEeCCCCHH-------HHHHHhcCCCCCCCCcEEEEEeC-ChhhHhh--------hCCCceEEcCCCCHHH
Q 002458 93 RLCRKRVLVILDDVDQLE-------QLQALVGNHDWFGFGSRIIITSR-DEHVLKS--------HGVTNTYKVRGLDYVE 156 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~-------~l~~l~~~~~~~~~gsrIIiTTR-~~~~~~~--------~~~~~~~~v~~L~~~e 156 (919)
....+.-+|++||++... .+-.+..... ..|..||+||. ++.-+.. .....+++++..+.++
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 444445588899997431 1212221111 23557888874 4322211 2233478999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 157 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
-..++.+.+...... --+++...|++++.|.--.|.
T Consensus 268 r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 268 RKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 999999887532211 123667788888877654443
No 108
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0016 Score=76.33 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
++.-++|+|+|+... ..+.+...+.......++|++|.+. .+... ..-...++++.++.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 355688999997664 4666766655445567777666553 33322 2234689999999999999998877443322
Q ss_pred ChhHHHHHHHHHHHhCCchhHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal 193 (919)
...+....+++.++|.+--+
T Consensus 203 --ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 203 --AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 12355678888999876443
No 109
>PRK06620 hypothetical protein; Validated
Probab=97.81 E-value=0.0002 Score=73.27 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=78.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
+.+.|||++|+|||+||+++++.... .++.... . .. +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~----~------~~-------------------------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF----F------NE-------------------------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh----h------ch-------------------------hHHh
Confidence 66899999999999999997775421 2222000 0 00 0111
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChhh-------HhhhCCCceEEcCCCCHHHHHHHHHHHhc
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEHV-------LKSHGVTNTYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~~-------~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
..-++++||++...+ +-.+..... ..|..||+|++...- .......-+++++.+++++..+++.+.+.
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 224678899986543 222211111 347789999885421 12223344899999999998888888774
Q ss_pred CCCCCChhHHHHHHHHHHHhCCchhH
Q 002458 167 NGKQPTDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~GlPLa 192 (919)
...- .--+++.+.+++++.|---.
T Consensus 162 ~~~l--~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISSV--TISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcCC--CCCHHHHHHHHHHccCCHHH
Confidence 3211 11236677777777665433
No 110
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00037 Score=79.62 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=77.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCC-----CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~ 88 (919)
..+-|.++|++|+|||++|+++++.+...+ ....|+. +.. . +++....++.. .......+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~---~--------eLl~kyvGete---~~ir~iF~ 279 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG---P--------ELLNKYVGETE---RQIRLIFQ 279 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc---h--------hhcccccchHH---HHHHHHHH
Confidence 346688999999999999999999876542 2234442 211 0 01111000000 00011111
Q ss_pred HHHHH-HcCCcEEEEEeCCCCHH---------H-----HHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCce
Q 002458 89 LIRWR-LCRKRVLVILDDVDQLE---------Q-----LQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNT 146 (919)
Q Consensus 89 ~i~~~-L~~kk~LlVlDdv~~~~---------~-----l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~ 146 (919)
..++. ..+++++|++|+++..- + +..+....+.. ..+..||.||.....+.. ...+..
T Consensus 280 ~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 280 RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVK 359 (512)
T ss_pred HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceE
Confidence 22221 13478999999997531 1 22333333211 134556666665433221 244667
Q ss_pred EEcCCCCHHHHHHHHHHHhc
Q 002458 147 YKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 147 ~~v~~L~~~ea~~Lf~~~a~ 166 (919)
++++..+.++..++|..+..
T Consensus 360 I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 360 IRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred EEeCCCCHHHHHHHHHHHhh
Confidence 99999999999999999873
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.001 Score=75.76 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ..++|...+....+.+++|++|.+ +.+... ..-...++++.++.++..+.+.+.+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 466789999997653 366666655544567777776654 333322 2234689999999999999999887543321
Q ss_pred ChhHHHHHHHHHHHhCCchhH
Q 002458 172 TDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLa 192 (919)
...+....|++.++|.+-.
T Consensus 195 --i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 --HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred --CCHHHHHHHHHHcCCCHHH
Confidence 2235567889999887753
No 112
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=7.9e-06 Score=83.13 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCCcEEEEccCCCCccccc---cccCCCCCcEEecCCCCCCCcCCCC-CCCCccceeeccCccccc-cccccccCcccc
Q 002458 398 RPEKLFKLNLCNSRIKYLWK---GIKPLKELKFMNLSHSCNLIRTPDF-TGVPNLERLNLEGCTRLL-EVHQSVGTLKRL 472 (919)
Q Consensus 398 ~~~~L~~L~L~~n~i~~l~~---~~~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L 472 (919)
....+++|||.+|.|+...+ -+.++|.|+.|+|++|.+...+..+ ..+.+|++|.|.|..... .....+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34678899999998875432 2678999999999999877655554 356789999998854322 233455677777
Q ss_pred ceecccccc
Q 002458 473 ILLNLKDCR 481 (919)
Q Consensus 473 ~~L~L~~n~ 481 (919)
+.|.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777777763
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00046 Score=78.46 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=85.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
.-+.|+|+.|+|||+||+++++.+..+...+.++.. ..+..++...+. .. ....++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~-~~---------~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIR-SG---------EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHh-cc---------hHHHHHHHcc
Confidence 568899999999999999999987655444556541 122223333311 10 1223444443
Q ss_pred CCcEEEEEeCCCCHHH----HHHHhcCCCC-CCCCcEEEEEeCC-hhh--------HhhhCCCceEEcCCCCHHHHHHHH
Q 002458 96 RKRVLVILDDVDQLEQ----LQALVGNHDW-FGFGSRIIITSRD-EHV--------LKSHGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~----l~~l~~~~~~-~~~gsrIIiTTR~-~~~--------~~~~~~~~~~~v~~L~~~ea~~Lf 161 (919)
+ .-++++||++.... .+.+...... ...|..||+||.. +.. ...+.....+++++++.++..+++
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3 44778899855421 1111111100 0235678888854 221 112223358899999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHhCCc
Q 002458 162 HLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 189 (919)
.+++-.... .--++....++..+.|.
T Consensus 281 ~~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 988854321 11235556666666654
No 114
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00039 Score=76.46 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=92.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC----CCeeEEEEechhhhccCChHHHHHHHHHH-------HhcccCcc----
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ----FEASSFLANVREVSVTRGLVPLQEQLLSE-------VLMERDLI---- 79 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~s~~~~l~~l~~~ll~~-------~~~~~~~~---- 79 (919)
...+.|+|+.|+||||+|+.+++.+-.. +..... ....+-......+... +..+.+.+
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~ 117 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------ADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKF 117 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CCCCCCCHHHHHHHcCCCCCEEEeecccccccccc
Confidence 4578899999999999999999976432 111100 0011111112222111 00000000
Q ss_pred --ccchhhhHHHHHHHH-----cCCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEe-CChhhHhhh-CCCceEE
Q 002458 80 --IWDVHKGINLIRWRL-----CRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITS-RDEHVLKSH-GVTNTYK 148 (919)
Q Consensus 80 --~~~~~~~~~~i~~~L-----~~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTT-R~~~~~~~~-~~~~~~~ 148 (919)
.-.+++ +..+.+.+ .+++-++|+|+++.... .+++...+.....+..+|++| +...+.... .-...++
T Consensus 118 ~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~ 196 (351)
T PRK09112 118 KTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPIS 196 (351)
T ss_pred cccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEE
Confidence 001111 22333333 24667899999976643 444544443333455555444 443333222 2235899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 002458 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (919)
Q Consensus 149 v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 197 (919)
+.+++.++..+++.+.+.... ...+....+++.++|.|.....+.
T Consensus 197 l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 197 LKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999987542211 113456789999999998655443
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0012 Score=74.14 Aligned_cols=156 Identities=14% Similarity=0.219 Sum_probs=87.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC--------CCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKG 86 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~ 86 (919)
.+.+.++|+.|+||||+|+++.+.+... |...++-. .. ....++..+ .+++.+...
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~~~~~i-~~l~~~~~~------------ 102 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNNSVDDI-RNLIDQVRI------------ 102 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCCCHHHH-HHHHHHHhh------------
Confidence 4688899999999999999999876431 21111110 00 011111111 111211000
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHH
Q 002458 87 INLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFH 162 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~ 162 (919)
.-..+++-+||+|+++... .++.+............+|++|.. +.+... ......++++.++.++....+.
T Consensus 103 -----~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 103 -----PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred -----ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 0012355679999987543 355554433322345566655533 233222 2223579999999999999998
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 163 LKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
..+...... -..+.+..++.+++|.+-.+
T Consensus 178 ~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 178 GIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 877543321 12356778888898866533
No 116
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.0002 Score=84.02 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=93.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHH------hccc-CccccchhhhH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEV------LMER-DLIIWDVHKGI 87 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~------~~~~-~~~~~~~~~~~ 87 (919)
...+.++|..|+||||+|+.+++.+-.... . ....++......++...- .... ..+..+..+.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~-----~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li 108 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETG----I-----TATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELL 108 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccC----C-----CCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHH
Confidence 356789999999999999999986633210 0 000111111111111100 0000 01111111111
Q ss_pred HHHHH-HHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHH
Q 002458 88 NLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFH 162 (919)
Q Consensus 88 ~~i~~-~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~ 162 (919)
..+.. -..+++-++|+|+++... ..++|+..+.......++|.+|.+.+ +... ..-...|.++.++.++..+.+.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHH
Confidence 11111 124567789999997664 46666665554456777776666643 3322 2224689999999999999998
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 163 LKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
+.+-..... ...+....|++.++|.+-...
T Consensus 189 ~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 189 HILQAEQIP--FEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred HHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 876332211 123556789999999775433
No 117
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0011 Score=76.69 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=61.5
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
++.-++|+|+++.. ....++...+....+.+++|++|.+.+ +... ..-...++++.++.++..+.+.+.+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668889999775 345666655544456788887766543 2211 1223578999999999888777766433222
Q ss_pred ChhHHHHHHHHHHHhCCchhHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal 193 (919)
- ..+....+++.++|.+.-+
T Consensus 198 ~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 198 F--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred C--CHHHHHHHHHHcCCcHHHH
Confidence 1 2245677888999977543
No 118
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.73 E-value=0.00025 Score=75.37 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=72.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~ 91 (919)
...-+.++|++|+||||+|+.+++.+...- ....++. .+. .+ +.....+.. .......++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~----~~----l~~~~~g~~------~~~~~~~~~ 102 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER----AD----LVGEYIGHT------AQKTREVIK 102 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH----HH----hhhhhccch------HHHHHHHHH
Confidence 456688999999999999999998753211 1112222 100 01 111111100 001112222
Q ss_pred HHHcCCcEEEEEeCCCCH----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHh--------hhCCCceEEcCCCC
Q 002458 92 WRLCRKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK--------SHGVTNTYKVRGLD 153 (919)
Q Consensus 92 ~~L~~kk~LlVlDdv~~~----------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~--------~~~~~~~~~v~~L~ 153 (919)
+. ..-+|++|+++.. +.++.+............+|+++.....-. .......++++.++
T Consensus 103 ~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 103 KA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred hc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 21 1247889999752 345666655443333445666654432211 01223468999999
Q ss_pred HHHHHHHHHHHhcC
Q 002458 154 YVEALQLFHLKVSN 167 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~ 167 (919)
.+|..+++.+.+..
T Consensus 180 ~~el~~Il~~~~~~ 193 (261)
T TIGR02881 180 VEELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
No 119
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.4e-05 Score=57.38 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=24.0
Q ss_pred CCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCc
Q 002458 613 FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (919)
Q Consensus 613 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 647 (919)
++|++|++++|+|+.+|..+++|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35777777777777777667777777777777775
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=6.7e-05 Score=81.89 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=62.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC-CCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc-----hhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD-----VHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~-----~~~~~~~ 89 (919)
..++|+|++|+|||||++.+++.+... |+..+|+..+++- ...+.+++++++..+....-..... .....+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999987655 9999999866442 3467888888865433222111111 1111222
Q ss_pred HHHH-HcCCcEEEEEeCCCCHHH
Q 002458 90 IRWR-LCRKRVLVILDDVDQLEQ 111 (919)
Q Consensus 90 i~~~-L~~kk~LlVlDdv~~~~~ 111 (919)
.++. -.+++++|++|++.....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHH
Confidence 2222 357999999999976654
No 121
>PF14516 AAA_35: AAA-like domain
Probab=97.71 E-value=0.006 Score=67.04 Aligned_cols=180 Identities=18% Similarity=0.256 Sum_probs=101.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhc--cCChHHHHHHHHHHHhcccCc-----c-----ccch
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV--TRGLVPLQEQLLSEVLMERDL-----I-----IWDV 83 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~--~~~l~~l~~~ll~~~~~~~~~-----~-----~~~~ 83 (919)
+.+.|.|+-.+|||+|..++.+....+=-.+++++ ...... ........+.+...+...-.. . ....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 48899999999999999999998765433344554 332221 123443333333332222111 1 1112
Q ss_pred hhhHHHHHHHH-c--CCcEEEEEeCCCCHHH---H-HHHhcCC-CCCC-------CCc-E-EEEEe-CChhhHhh----h
Q 002458 84 HKGINLIRWRL-C--RKRVLVILDDVDQLEQ---L-QALVGNH-DWFG-------FGS-R-IIITS-RDEHVLKS----H 141 (919)
Q Consensus 84 ~~~~~~i~~~L-~--~kk~LlVlDdv~~~~~---l-~~l~~~~-~~~~-------~gs-r-IIiTT-R~~~~~~~----~ 141 (919)
......+.+.+ . .++++|++|+||..-. + +.+.+.+ .|.. ..+ + |++.+ ++...... .
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF 190 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPF 190 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCc
Confidence 23334454433 2 5899999999975532 0 1111110 0110 111 1 22222 21111111 1
Q ss_pred CCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccC
Q 002458 142 GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (919)
Q Consensus 142 ~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~ 202 (919)
.....+++++++.+|..+|..++-.. ... ...+++...++|+|.-+..++..+..
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLE---FSQ---EQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhcc---CCH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23347899999999999999887532 111 23889999999999999999988865
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00078 Score=81.85 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=61.6
Q ss_pred cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|||+++... ..+.|+..+......+.+|++|.+. .+... ..-...|++..++.++..+++.+.+-....
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 3556678899987664 3555555554445677777666543 34332 233468999999999999888876633322
Q ss_pred CChhHHHHHHHHHHHhCCchhH
Q 002458 171 PTDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPLa 192 (919)
. ...+....|++.++|.+..
T Consensus 198 ~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 198 P--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred C--CCHHHHHHHHHHcCCCHHH
Confidence 1 1234567789999997743
No 123
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.0013 Score=76.15 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=89.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHh------cc-cCccccchhhhH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL------ME-RDLIIWDVHKGI 87 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~------~~-~~~~~~~~~~~~ 87 (919)
.+.+.++|+.|+||||+|+.+++.+-..- |.. . ..++-.....++..... .. ......+..+..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~----~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi 108 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G----DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNII 108 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C----CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHH
Confidence 46788999999999999999999763211 110 0 00111111111111000 00 000001111111
Q ss_pred HHHHHH-HcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHH
Q 002458 88 NLIRWR-LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFH 162 (919)
Q Consensus 88 ~~i~~~-L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~ 162 (919)
..+... ..+++-++|+|+++.. ....+|............+|++|... .+... ......+++..++.++....+.
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred HHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHH
Confidence 111110 1123446999999764 34555555443334466666555433 33322 2234589999999999999988
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHhCCchh-HHHHHH
Q 002458 163 LKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLG 197 (919)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l~ 197 (919)
+.+...... ...+.+..+++.++|.+- |+..+-
T Consensus 189 ~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 189 SIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 876433211 112456788899999654 444443
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0013 Score=77.44 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC--CCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc------cccchhhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL------IIWDVHKG 86 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~------~~~~~~~~ 86 (919)
...+.++|+.|+||||+|+.+++.+-.. .+...|..+.. ...+-.....++... ...+. .....++.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~~~~~g--~~~n~~~~d~~s~~~vd~I 112 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCRDFDAG--TSLNISEFDAASNNSVDDI 112 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHHHHhcc--CCCCeEEecccccCCHHHH
Confidence 3568899999999999999999976331 11112221110 111111112222110 00000 00011121
Q ss_pred HHHHHHH----HcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeC-ChhhHhh-hCCCceEEcCCCCHHHHH
Q 002458 87 INLIRWR----LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSR-DEHVLKS-HGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 87 ~~~i~~~----L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR-~~~~~~~-~~~~~~~~v~~L~~~ea~ 158 (919)
...+.+. ..+++-++|+|+++... ..+.|...+....+.+.+|++|. ...+... ......+++..++.++..
T Consensus 113 r~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~ 192 (620)
T PRK14954 113 RQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQ 192 (620)
T ss_pred HHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHH
Confidence 1111111 23455678999987764 35555555443345566665554 3444332 233568999999999998
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
..+.+.+..... .-..+.+..+++.++|..-
T Consensus 193 ~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 193 SQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 888876643221 1123567888999999554
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0015 Score=76.20 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=66.4
Q ss_pred cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-+||+|+++.. +....|...+........+|++|.+. .+... ..-...++++.++.++..+.+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999776 34566665554334466677666553 33322 122357899999999999999887654322
Q ss_pred CChhHHHHHHHHHHHhCCch-hHHHHHHhh
Q 002458 171 PTDYRVELSKYVVNYAGGLP-LAIEVLGSF 199 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlP-Lal~~l~~~ 199 (919)
....+.+..|+++++|.+ .|+..+...
T Consensus 197 --~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 197 --DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112356778888999854 677666543
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0012 Score=76.87 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=61.0
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++.... ..++...+......+.+|.+|.+.+ +... ..-...++++.++.++..+.+.+.+......
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4667899999986643 5566555544445677777665543 2211 1123578999999999998888766433211
Q ss_pred ChhHHHHHHHHHHHhCCchh
Q 002458 172 TDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPL 191 (919)
...+....+++.++|.+-
T Consensus 198 --~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 198 --FDATALQLLARAAAGSMR 215 (527)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 223456778899999775
No 127
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0016 Score=71.87 Aligned_cols=216 Identities=22% Similarity=0.209 Sum_probs=124.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCe--eEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
+.|+|..|+|||+.++.+++++...... ++++. + -.......+..+++.++.... ..-....+....+.+.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c---~~~~t~~~i~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-C---LELRTPYQVLSKILNKLGKVP-LTGDSSLEILKRLYDNLS 119 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-e---eeCCCHHHHHHHHHHHcCCCC-CCCCchHHHHHHHHHHHH
Confidence 8899999999999999999988665433 46664 2 224456677777887754222 222334455566666654
Q ss_pred --CCcEEEEEeCCCCHHH-----HHHHhcCCCCCCCCcEE--EEEeCChhhHhh--------hCCCceEEcCCCCHHHHH
Q 002458 96 --RKRVLVILDDVDQLEQ-----LQALVGNHDWFGFGSRI--IITSRDEHVLKS--------HGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 96 --~kk~LlVlDdv~~~~~-----l~~l~~~~~~~~~gsrI--IiTTR~~~~~~~--------~~~~~~~~v~~L~~~ea~ 158 (919)
++.++||||+++.... +-.|....... .++| |..+-+...... .+.. .+..++-+.+|-.
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~ 196 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELY 196 (366)
T ss_pred hcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHH
Confidence 4789999999966643 22333332222 4543 344444433222 2222 3678888999999
Q ss_pred HHHHHHh---cCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHH--hhccCC------CHHHHHHHHHHHhcCCChhHHHH
Q 002458 159 QLFHLKV---SNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLG--SFLCGR------SVEEWKSALNRLQEAPNEKVLKV 226 (919)
Q Consensus 159 ~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l~--~~L~~~------~~~~w~~~l~~l~~~~~~~i~~~ 226 (919)
+.+..++ |.....+++..+++..++.+.+|- =.|+..+- +.+..+ +.+.-..+.+.. -...
T Consensus 197 ~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~-------~~~~ 269 (366)
T COG1474 197 DILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI-------ERDV 269 (366)
T ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh-------hHHH
Confidence 9998886 344455555666666666666653 33443332 222210 122222221111 1123
Q ss_pred HHhhhccCChhhHHHhhhhccc
Q 002458 227 LRISYDGLDRRDKEIFLDIACF 248 (919)
Q Consensus 227 l~~sy~~L~~~~k~~fl~~a~f 248 (919)
..-....|+.++|..+..++..
T Consensus 270 ~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 270 LEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HHHHHHcCCHhHHHHHHHHHHh
Confidence 3444678888887776666554
No 128
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00062 Score=76.16 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=84.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+-|.++|++|+|||++|+++++.....| +.+. . ..+ .....++. .......+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~---------s~l----~~k~~ge~------~~~lr~lf~~A 234 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G---------SEF----VQKYLGEG------PRMVRDVFRLA 234 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h---------HHH----HHHhcchh------HHHHHHHHHHH
Confidence 457799999999999999999999765433 1111 0 011 11111100 00111222333
Q ss_pred HcCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCceEEcC
Q 002458 94 LCRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNTYKVR 150 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~~~v~ 150 (919)
....+.+|++|+++... .+..+....+.+ ..+..||.||.....+.. ...+..++++
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 34678999999986431 122333322211 246678888886543322 2456789999
Q ss_pred CCCHHHHHHHHHHHhcCCCC-CChhHHHHHHHHHHHhCCc
Q 002458 151 GLDYVEALQLFHLKVSNGKQ-PTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 189 (919)
..+.++..++|..+..+... +..++ .++++.+.|.
T Consensus 315 ~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 315 LPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCC
Confidence 99999999999877643221 22222 3455556554
No 129
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=3.3e-06 Score=84.71 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=33.0
Q ss_pred ccccCCCCCcEEecCCCCCCCcCCC-----CCCCCccceeeccCccc
Q 002458 417 KGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTR 458 (919)
Q Consensus 417 ~~~~~l~~L~~L~Ls~n~~~~~~~~-----~~~l~~L~~L~L~~~~~ 458 (919)
+.+-+|++|+..+||.|.+....|. ++..+.|++|.+++|..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3466789999999999988776663 67788899999988753
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0022 Score=75.95 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEe-CChhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... .+.+|+..+........+|++| +...+... ......+++..++.++..+.+...+-.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 566788999987653 4666666555444566655555 44444332 2234689999999999999988766432211
Q ss_pred ChhHHHHHHHHHHHhCCchh-HHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPL-AIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPL-al~~l 196 (919)
...+.+..+++.++|-+- |+..+
T Consensus 197 --id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 197 --YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122457788999988664 44443
No 131
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.66 E-value=0.00014 Score=72.93 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=26.7
Q ss_pred hHHHHhHh-cCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 2 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
+++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45566664 233457999999999999999999999987665
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00047 Score=77.45 Aligned_cols=120 Identities=21% Similarity=0.235 Sum_probs=77.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHcC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~~ 96 (919)
++.|.|+-++||||+++.+....... .+++...........+.+....+. .+.. .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~-------------------~~~~---~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYI-------------------ELKE---R 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHH-------------------Hhhc---c
Confidence 99999999999999996666655444 455542211111111111111111 1111 1
Q ss_pred CcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh------hCCCceEEcCCCCHHHHHHHHH
Q 002458 97 KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS------HGVTNTYKVRGLDYVEALQLFH 162 (919)
Q Consensus 97 kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~------~~~~~~~~v~~L~~~ea~~Lf~ 162 (919)
++..|+||.|.....|+.....+...++. +|+||+-....... .|-...+++.+|+..|-..+-.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 78999999999999998887776655666 89998887654332 1334588999999999877643
No 133
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.66 E-value=0.00049 Score=68.96 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
+...-+.+||++|+||||||..+++.....|. +.+. .... ...++.. ++.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~---k~~dl~~-il~---------------------- 97 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIE---KAGDLAA-ILT---------------------- 97 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC-----SCHHHHH-HHH----------------------
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhh---hHHHHHH-HHH----------------------
Confidence 44677889999999999999999998876653 2221 0011 1111111 111
Q ss_pred HHcCCcEEEEEeCCCCHHH--HHHHhcCCCC--------CCCC-----------cEEEEEeCChhhHhhhCC--CceEEc
Q 002458 93 RLCRKRVLVILDDVDQLEQ--LQALVGNHDW--------FGFG-----------SRIIITSRDEHVLKSHGV--TNTYKV 149 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~--l~~l~~~~~~--------~~~g-----------srIIiTTR~~~~~~~~~~--~~~~~v 149 (919)
.++ ++-++.+|.++.... -+.|.+.... .+++ +-|=-|||...+...... .-+.++
T Consensus 98 ~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 98 NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRL 176 (233)
T ss_dssp T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-
T ss_pred hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecch
Confidence 122 344677799976642 3333332211 1222 234458886544332221 224589
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
+..+.+|-.++..+.+..-. -+-..+.+.+|++++.|-|--..-
T Consensus 177 ~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 177 EFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp ---THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHH
Confidence 99999999999988874433 223457789999999999954433
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.64 E-value=0.00019 Score=80.74 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=76.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+-|.++|++|+|||++|+++++.....|- .+.. .+ +....... ........+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-se---------L~~k~~Ge----------~~~~vr~lF~~A 272 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SE---------LIQKYLGD----------GPKLVRELFRVA 272 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-ch---------hhhhhcch----------HHHHHHHHHHHH
Confidence 3466889999999999999999998765541 1110 00 11111100 000111222223
Q ss_pred HcCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCceEEcC
Q 002458 94 LCRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNTYKVR 150 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~~~v~ 150 (919)
..+.+.+|++|+++... .+-.+....+.+ ..+.+||.||.....+.. ...+..++++
T Consensus 273 ~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~ 352 (438)
T PTZ00361 273 EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFP 352 (438)
T ss_pred HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeC
Confidence 34567888999875321 122222222211 236788888886544433 1346689999
Q ss_pred CCCHHHHHHHHHHHhcC
Q 002458 151 GLDYVEALQLFHLKVSN 167 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~ 167 (919)
..+.++..++|..+..+
T Consensus 353 ~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 353 NPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988744
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0027 Score=74.21 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ..++|+..+........+|++|.+ ..+... ..-...+++..++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 456688999986553 466666655544567777766654 333322 2234689999999999998888876543321
Q ss_pred ChhHHHHHHHHHHHhCCchh-HHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPL-AIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPL-al~~l 196 (919)
...+....|+++++|.+- |+..+
T Consensus 197 --i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 197 --VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123456778889999774 44444
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00065 Score=74.10 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCCC
Q 002458 97 KRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPT 172 (919)
Q Consensus 97 kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~ 172 (919)
++-++|+|+++... ...++...+..-..++.+|+||.+.. +... ..-...+.+..++.+++.+.+..... . ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~-~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E-SD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c-CC-
Confidence 34445679987653 35555554444346788888887763 3322 23345899999999999999986541 1 11
Q ss_pred hhHHHHHHHHHHHhCCchhHHHHH
Q 002458 173 DYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 173 ~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
.+.+..++..++|.|.....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 234567788999999755444
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0017 Score=76.97 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=93.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcc---cCc-cccchhhhHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---RDL-IIWDVHKGINLI 90 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~---~~~-~~~~~~~~~~~i 90 (919)
.+.+.++|+.|+||||+|+.+++.+....... .....+.......+....... -+. .....++. +.+
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~i-r~i 108 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDA-REI 108 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHH-HHH
Confidence 45678999999999999999998764221100 000111111222222110000 000 00011111 112
Q ss_pred HHHH-----cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHH
Q 002458 91 RWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 91 ~~~L-----~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf 161 (919)
.+.+ .+++-++|+|+++.. +..+.|...+....+.+.+|++|.+. .+... ......++++.++.++..+.+
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L 188 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHL 188 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHH
Confidence 2221 245678999999755 44666665554434567777766543 33221 123357899999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
.+.+...... ...+.+..+++.++|.+..+..
T Consensus 189 ~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 189 RKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 8887543321 1235677899999998865443
No 138
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0017 Score=76.32 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=93.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhc-------ccCccccchhhhH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-------ERDLIIWDVHKGI 87 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~-------~~~~~~~~~~~~~ 87 (919)
...+.++|+.|+||||+|+.+++.+-......- ........+...-...+...... .......+..+.+
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 457889999999999999999997643321000 00000001111111111111000 0001111111111
Q ss_pred HHHHHH-HcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEe-CChhhHhh-hCCCceEEcCCCCHHHHHHHHH
Q 002458 88 NLIRWR-LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFH 162 (919)
Q Consensus 88 ~~i~~~-L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~ 162 (919)
..+... ..+++-++|+|+++... ..+.|...+....+++.+|++| ....+... ..-...++++.++.++..+.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 111100 12455678999987664 3566665554445677776655 33333322 1234589999999999999998
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 163 LKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
+.+-+.... ...+....|++.++|.+.-+.
T Consensus 202 ~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 202 RIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 887443221 122567888999999875544
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.005 Score=70.98 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEHV-LKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~~-~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ..++|+.......+.+++|++|.+..- ... ..-...+++..++.++..+.+.+.+......
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456788999997664 356666655544567888887776422 111 1224589999999999999988776443321
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
...+.+..+++.++|.+.-+..
T Consensus 196 --i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 196 --YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred --CCHHHHHHHHHHcCCcHHHHHH
Confidence 1235678899999998854433
No 140
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00069 Score=78.47 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=90.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+.|||..|+|||.|++++++.+...+ ..+.|+. ..++..++...+.. .....++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----------ccHHHHHHH
Confidence 4589999999999999999999876533 2345554 12233333333211 012234444
Q ss_pred HcCCcEEEEEeCCCCHH---H----HHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHHH
Q 002458 94 LCRKRVLVILDDVDQLE---Q----LQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEA 157 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~---~----l~~l~~~~~~~~~gsrIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~ea 157 (919)
+++- =+|||||++... . +-.+...+. ..|..|||||+.. .+...+...-+++++..+.+..
T Consensus 375 y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YREM-DILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred hhcC-CEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 4433 467889995441 1 112222211 2466788888852 2222234455899999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 158 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.+++.+++...... --.++...|++++.+..-.|.
T Consensus 452 ~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 452 IAILRKKAVQEQLN--APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHH
Confidence 99999988543221 123566777777666543333
No 141
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.59 E-value=0.00077 Score=74.03 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~ 82 (919)
++..++..+ .-..++.++|++|+||||+|+++++.....+ ..+. .. . .....+. +.+.......
T Consensus 32 ~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~---~-~~~~~i~-~~l~~~~~~~------ 95 (316)
T PHA02544 32 TFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GS---D-CRIDFVR-NRLTRFASTV------ 95 (316)
T ss_pred HHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cC---c-ccHHHHH-HHHHHHHHhh------
Confidence 344444432 2246777899999999999999999764322 2222 11 1 1111111 1111110000
Q ss_pred hhhhHHHHHHHHcCCcEEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh--hCCCceEEcCCCCHHHH
Q 002458 83 VHKGINLIRWRLCRKRVLVILDDVDQL---EQLQALVGNHDWFGFGSRIIITSRDEHVLKS--HGVTNTYKVRGLDYVEA 157 (919)
Q Consensus 83 ~~~~~~~i~~~L~~kk~LlVlDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~--~~~~~~~~v~~L~~~ea 157 (919)
.+.+.+-+||+|+++.. +..+.+.........++++|+||........ ......++++..+.++.
T Consensus 96 ----------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~ 165 (316)
T PHA02544 96 ----------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQ 165 (316)
T ss_pred ----------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHH
Confidence 01234567889999766 2223332222333467899999976432211 12224678888888888
Q ss_pred HHHHHH
Q 002458 158 LQLFHL 163 (919)
Q Consensus 158 ~~Lf~~ 163 (919)
.+++..
T Consensus 166 ~~il~~ 171 (316)
T PHA02544 166 IEMMKQ 171 (316)
T ss_pred HHHHHH
Confidence 777654
No 142
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00056 Score=64.18 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.005 Score=70.93 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++.. +..+++...+....+...+|++|.+ ..+... ......+++..++.++..+.+.+.+-.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999998765 3355555554443456666665543 333322 2234589999999999999988877433221
Q ss_pred ChhHHHHHHHHHHHhCCchhHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
...+.+..++..++|.+..+.
T Consensus 198 --id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 198 --YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 122556778888999765443
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.58 E-value=0.0013 Score=70.42 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
-|.++|++|+||||+|+.++..+...- ....|+. ++. . ++...+.+... ......+++ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~----~l~~~~~g~~~------~~~~~~~~~-a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----D----DLVGQYIGHTA------PKTKEILKR-A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----H----HHhHhhcccch------HHHHHHHHH-c
Confidence 578999999999999999988664321 1122332 110 1 12222111110 111122222 1
Q ss_pred cCCcEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh--------CCCceEEcCCCCHH
Q 002458 95 CRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--------GVTNTYKVRGLDYV 155 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~--------~~~~~~~v~~L~~~ 155 (919)
..-+|++|+++.. +..+.+.........+.+||.++.....-... .....++++.++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 2357888999743 22344444443334566777776543221111 12457999999999
Q ss_pred HHHHHHHHHhcC
Q 002458 156 EALQLFHLKVSN 167 (919)
Q Consensus 156 ea~~Lf~~~a~~ 167 (919)
|-.+++...+-.
T Consensus 199 dl~~I~~~~l~~ 210 (284)
T TIGR02880 199 ELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999888743
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0026 Score=75.28 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=91.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC-CeeEEEEechhhhccCChHHHHHHHHHHHhcccCc-cc-cchhhhHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-II-WDVHKGINLIR 91 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~-~~-~~~~~~~~~i~ 91 (919)
.+.+.++|+.|+||||+|+.+++.+-... +... ....+..+....+..... .+. .. .....+++.++
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~~i~~g~h--~D~~ei~~~~~~~vd~IR 107 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCRAIAAGNA--LDVIEIDAASNTGVDNIR 107 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHHHHhcCCC--ccEEEEeccccCCHHHHH
Confidence 35678999999999999999999764321 1000 001111122222211100 000 00 00001111222
Q ss_pred HH---H-----cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHH
Q 002458 92 WR---L-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQ 159 (919)
Q Consensus 92 ~~---L-----~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~ 159 (919)
+. + .+++-++|+|+++.. +..++|...+........+|++|.+. .+... ......+++..++.++..+
T Consensus 108 eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~ 187 (620)
T PRK14948 108 ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQ 187 (620)
T ss_pred HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHH
Confidence 11 1 245668899999865 34666665554334456666555544 33332 2234578899999999988
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHH
Q 002458 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (919)
Q Consensus 160 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 195 (919)
.+.+.+...... ...+.+..++++++|.+..+..
T Consensus 188 ~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 188 HLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 888776442211 1124577899999998754443
No 146
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00031 Score=74.51 Aligned_cols=100 Identities=23% Similarity=0.239 Sum_probs=56.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
+-+.++|..|+|||.||.++++.+..+...++|+. ..++...+....... .......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-------~~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-------GKEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-------ccccHHHHHHHhc
Confidence 45889999999999999999998866544555554 122233332221110 0111223344455
Q ss_pred CCcEEEEEeCCCC--HH-----HHHHHhcCCCCCCCCcEEEEEeCCh
Q 002458 96 RKRVLVILDDVDQ--LE-----QLQALVGNHDWFGFGSRIIITSRDE 135 (919)
Q Consensus 96 ~kk~LlVlDdv~~--~~-----~l~~l~~~~~~~~~gsrIIiTTR~~ 135 (919)
+-. ||||||+.. .. ++-.+.... ...|..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHH--HHCCCCEEEECCCC
Confidence 444 789999932 21 122232221 13466799999753
No 147
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00091 Score=70.67 Aligned_cols=147 Identities=18% Similarity=0.286 Sum_probs=90.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
+-.+=|.+||++|.|||-||++|+++... .|+-.+. .++.+..+.+ +..++++
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvg--------SElVqKYiGE--------------GaRlVRe 235 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVG--------SELVQKYIGE--------------GARLVRE 235 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEecc--------HHHHHHHhcc--------------chHHHHH
Confidence 44567889999999999999999998643 4454221 1222232221 2333333
Q ss_pred HH---c-CCcEEEEEeCCCCHH--------------H--HHHHhcCCCCCC--CCcEEEEEeCCh-----hhHhhhCCCc
Q 002458 93 RL---C-RKRVLVILDDVDQLE--------------Q--LQALVGNHDWFG--FGSRIIITSRDE-----HVLKSHGVTN 145 (919)
Q Consensus 93 ~L---~-~kk~LlVlDdv~~~~--------------~--l~~l~~~~~~~~--~gsrIIiTTR~~-----~~~~~~~~~~ 145 (919)
.. + ..+..|.+|.+|... | +-.|+.+.+-|. ...|||..|-.. .++..-..+.
T Consensus 236 lF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR 315 (406)
T COG1222 236 LFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDR 315 (406)
T ss_pred HHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccc
Confidence 32 2 467899999885442 1 334555555443 356899877644 3444445788
Q ss_pred eEEcCCCCHHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHhCCch
Q 002458 146 TYKVRGLDYVEALQLFHLKVSNGKQP-TDYRVELSKYVVNYAGGLP 190 (919)
Q Consensus 146 ~~~v~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 190 (919)
.++++.-+.+.-.++|+-|+.+-+.. .-++ +.+++.+.|.-
T Consensus 316 kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 316 KIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred eeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 99999888888889998888553322 2234 34555565543
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00026 Score=67.03 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=27.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999998766553445543
No 149
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0027 Score=69.99 Aligned_cols=181 Identities=16% Similarity=0.162 Sum_probs=99.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
-..+.|||..|.|||-|++++.+......+....+.. +. ......+...+.. ...+.+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----~s----e~f~~~~v~a~~~----------~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----TS----EDFTNDFVKALRD----------NEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----cH----HHHHHHHHHHHHh----------hhHHHHHHhh
Confidence 5679999999999999999999988777764433331 11 1112222222111 2345566666
Q ss_pred cCCcEEEEEeCCCCHHH----HHHHhcCCC-CCCCCcEEEEEeCCh---------hhHhhhCCCceEEcCCCCHHHHHHH
Q 002458 95 CRKRVLVILDDVDQLEQ----LQALVGNHD-WFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQL 160 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~~----l~~l~~~~~-~~~~gsrIIiTTR~~---------~~~~~~~~~~~~~v~~L~~~ea~~L 160 (919)
.-=++++||++-... -+.+...+. ....|-.||+|++.. ++.......-++++.+++.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334778999844221 111211111 112355899999742 2333344456899999999999999
Q ss_pred HHHHhcCCC--CCChhHHHHHHHHHHHhCCchhHHHHHHhhc--cC--CCHHHHHHHHHHH
Q 002458 161 FHLKVSNGK--QPTDYRVELSKYVVNYAGGLPLAIEVLGSFL--CG--RSVEEWKSALNRL 215 (919)
Q Consensus 161 f~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L--~~--~~~~~w~~~l~~l 215 (919)
+.+++.... -+++...-++..+.+-..-+.-|+..+..+- .+ -+.+.-++++..+
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHh
Confidence 999775432 2332233333333333333444444333221 11 2455555555543
No 150
>CHL00176 ftsH cell division protein; Validated
Probab=97.49 E-value=0.0037 Score=74.12 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=86.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+-|.++|++|+|||++|++++...... |+. ++. .++....... ........+....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is~----s~f~~~~~g~----------~~~~vr~lF~~A~ 272 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----ISG----SEFVEMFVGV----------GAARVRDLFKKAK 272 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----ccH----HHHHHHhhhh----------hHHHHHHHHHHHh
Confidence 4568999999999999999999876332 222 110 0011111000 0111223344455
Q ss_pred cCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCceEEcCC
Q 002458 95 CRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNTYKVRG 151 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~~~v~~ 151 (919)
...+.+|++|++|... .+..+....+.+ ..+..||.||........ ...+..+.++.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 6778999999996541 134444333222 345677777776543332 23456889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCC
Q 002458 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG 188 (919)
Q Consensus 152 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 188 (919)
.+.++..++++.++...... .......+++.+.|
T Consensus 353 Pd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 353 PDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 99999999999887542211 12234567777776
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0022 Score=73.26 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ..+.|.........+..+|++|.+ +.+... ......++++.++.++..+.+.+.+-+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 566788999987553 345555444433456677766643 333322 2234589999999999999888876432211
Q ss_pred ChhHHHHHHHHHHHhCCchh-HHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPL-AIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPL-al~~l 196 (919)
...+.+..++++++|.+- |+..+
T Consensus 200 --i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 200 --TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123567889999999654 44433
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=9.2e-05 Score=54.30 Aligned_cols=40 Identities=30% Similarity=0.560 Sum_probs=34.4
Q ss_pred CCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCc
Q 002458 588 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP 629 (919)
Q Consensus 588 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp 629 (919)
++|++|++++|++. .+|..++.|++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999965 48888999999999999999999877
No 153
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0064 Score=71.21 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=64.5
Q ss_pred cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCC
Q 002458 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 170 (919)
.+++-++|+|+++... .+++|........+...+|.+|.+. .+... ......++.+.++.++..+.+.+.+.....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3566788999987664 4667766665445667777666543 33322 223457899999999999999887754332
Q ss_pred CChhHHHHHHHHHHHhCCchhHHH
Q 002458 171 PTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 171 ~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
. ...+.+..+++.++|.+-.+.
T Consensus 197 ~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 197 K--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHH
Confidence 2 223567778899999775433
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=97.47 E-value=0.0037 Score=67.02 Aligned_cols=131 Identities=17% Similarity=0.202 Sum_probs=74.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC-C-CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..|.++|.+|+||||+|+.+++..... + ...-|+. ++ .. .+.....+... ......+++.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~----~l~~~~~g~~~------~~~~~~l~~a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RD----DLVGQYIGHTA------PKTKEVLKKA 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HH----HHHHHHhccch------HHHHHHHHHc
Confidence 347899999999999999999865321 1 1112332 11 11 12222111110 0111222221
Q ss_pred HcCCcEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh--------hCCCceEEcCCCCH
Q 002458 94 LCRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKS--------HGVTNTYKVRGLDY 154 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~--------~~~~~~~~v~~L~~ 154 (919)
..-+|++|+++.. +..+.+.........+.+||.++........ -.....++++.++.
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2248889999753 2344454444333456778787764432211 12456899999999
Q ss_pred HHHHHHHHHHhcC
Q 002458 155 VEALQLFHLKVSN 167 (919)
Q Consensus 155 ~ea~~Lf~~~a~~ 167 (919)
+|..+++.+.+..
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.42 E-value=0.0043 Score=65.35 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=109.6
Q ss_pred hHHHHhHhcC-CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCe------eEEEEechhhhccCChHHHHHHHHHHHhc
Q 002458 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA------SSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (919)
Q Consensus 2 ~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~------~~~~~~~~~~s~~~~l~~l~~~ll~~~~~ 74 (919)
+++++++... ....+-+.|+|.+|+|||++++++.......++. ++.+. .....+...+...++..+..
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCc
Confidence 5677777653 3456778999999999999999999866544432 23333 45567888899999998655
Q ss_pred ccCccccchhhhHHHHHHHHcC-CcEEEEEeCCCCHH------H------HHHHhcCCCCCCCCcEEEEEeCChhhHhhh
Q 002458 75 ERDLIIWDVHKGINLIRWRLCR-KRVLVILDDVDQLE------Q------LQALVGNHDWFGFGSRIIITSRDEHVLKSH 141 (919)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~L~~-kk~LlVlDdv~~~~------~------l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~ 141 (919)
+-.. .....+....+.+.++. +--+||+|.+++.- | +..|...+ .=+-|.+-|++..-+-..
T Consensus 123 P~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL----~ipiV~vGt~~A~~al~~ 197 (302)
T PF05621_consen 123 PYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL----QIPIVGVGTREAYRALRT 197 (302)
T ss_pred ccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc----CCCeEEeccHHHHHHhcc
Confidence 4332 23444555555566654 34578899996642 1 33332222 245566767654222111
Q ss_pred -----CCCceEEcCCCC-HHHHHHHHHHHhcC---CCCCChhHHHHHHHHHHHhCCchhHHH
Q 002458 142 -----GVTNTYKVRGLD-YVEALQLFHLKVSN---GKQPTDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 142 -----~~~~~~~v~~L~-~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
.-...+.++..+ ++|..+|+...... .....-...+++..|...++|+.--+.
T Consensus 198 D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 198 DPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred CHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 112355666665 34455555443211 111222346889999999999864444
No 156
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.42 E-value=1e-05 Score=86.28 Aligned_cols=230 Identities=23% Similarity=0.286 Sum_probs=116.8
Q ss_pred cCCCCCcEEecCCCCCCCcCC--C-CCCCCccceeeccCcccccc--ccccccCccccceecccccccccc--cCccccC
Q 002458 420 KPLKELKFMNLSHSCNLIRTP--D-FTGVPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKDCRNLVS--FPKNVCL 492 (919)
Q Consensus 420 ~~l~~L~~L~Ls~n~~~~~~~--~-~~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~n~~~~~--lp~~i~~ 492 (919)
..+++|++|+|..|...+... . ..++++|++|+++.|..... +-.-..++..|+.+.+++|.-.+. +-..-+.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 345666666666654433221 1 23466666666666653322 112234455566666666543221 1111123
Q ss_pred CCCCcEEEecCcCCCCcCc--ccccCCCCCcEeecCCCc-cccc--CccccCCCCCcEEEeCCCCCCCCCCCcchhhccc
Q 002458 493 MKSLKILCLCGCLKLEKLP--QDLGEVECLEELDVGGTA-IRQI--PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSL 567 (919)
Q Consensus 493 l~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~L~~n~-i~~l--p~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 567 (919)
+..+..+++..|..+.... ..-..+..|+.|+.++.. ++.. -.-..+..+|+.|-+.+|+......
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------- 337 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------- 337 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---------
Confidence 3445555555665443221 112345566777766543 2211 1122456778888887777422110
Q ss_pred ccCCCCCCCccccCCC-CCCCCCCcEEecCCCCCCCCC-CCcccCCCCCCCeeeCCCCCCc-c-----CcHhhhccCCCc
Q 002458 568 LLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGA-IPSDIGSLFSLEAIDLSGNNFF-S-----LPSSINQLLKLK 639 (919)
Q Consensus 568 ~~~~~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~-~-----lp~~l~~l~~L~ 639 (919)
+.. -.+++.|+.+++..|....+. +-..-.+++.|+.|.|++|... . +..+-..+..|.
T Consensus 338 -------------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 338 -------------FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred -------------hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 111 235567777777777644332 2222345677777777776433 1 223335566788
Q ss_pred EEecCcCccCCcCCCCCCcccEeeccCCCccceeccccc
Q 002458 640 ILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (919)
Q Consensus 640 ~L~L~~~~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n 678 (919)
.|.|++|+.+.. ..|+. +..|++|+.+.+...
T Consensus 405 ~lEL~n~p~i~d-----~~Le~--l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 405 VLELDNCPLITD-----ATLEH--LSICRNLERIELIDC 436 (483)
T ss_pred eeeecCCCCchH-----HHHHH--HhhCcccceeeeech
Confidence 888888875432 12332 345777777766543
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0077 Score=71.40 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEe-CChhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ..++|...+.....++.+|++| +...+... .....+++++.++.++..+.+.+.+......
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 455678999987664 3555555444334567766655 44444433 2334589999999999999998877543321
Q ss_pred ChhHHHHHHHHHHHhCCchh
Q 002458 172 TDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPL 191 (919)
...+.+..++..++|..-
T Consensus 200 --i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 --AEPEALNVIAQKADGGMR 217 (614)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 122456788899998664
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=4.9e-05 Score=90.55 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=102.0
Q ss_pred cccceecccccccccc-cCccc-cCCCCCcEEEecCcCCC-CcCcccccCCCCCcEeecCCCcccccCccccCCCCCcEE
Q 002458 470 KRLILLNLKDCRNLVS-FPKNV-CLMKSLKILCLCGCLKL-EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIF 546 (919)
Q Consensus 470 ~~L~~L~L~~n~~~~~-lp~~i-~~l~~L~~L~Ls~~~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L 546 (919)
.+|++|++++...... .|..+ ..+|+|++|.++|-.+. ..+-....++++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677777777443321 22222 34789999999884443 23444567888999999999999988 789999999999
Q ss_pred EeCCCCCCCCCCCcchhhcccccCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCC-CC----cccCCCCCCCeeeCC
Q 002458 547 SLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA-IP----SDIGSLFSLEAIDLS 621 (919)
Q Consensus 547 ~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~p----~~l~~l~~L~~L~Ls 621 (919)
.+.+-..... ..+-.+-+|++|+.||+|......+. +. +.-..||+|+.||.|
T Consensus 201 ~mrnLe~e~~----------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 201 SMRNLEFESY----------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccCCCCCch----------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 8876442210 12234667899999999988754422 11 122358899999999
Q ss_pred CCCCc--cCcHhhhccCCCcEEecCcCc
Q 002458 622 GNNFF--SLPSSINQLLKLKILCLEKCR 647 (919)
Q Consensus 622 ~n~l~--~lp~~l~~l~~L~~L~L~~~~ 647 (919)
++.+. .+-.-+..-|+|+.+.+-+|.
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 98877 333344555666666555443
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.39 E-value=0.0022 Score=74.84 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=83.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+-+.++|++|+|||++|++++......| +. ++ ..++..... +. ........+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~----~~~~~~~~~----g~------~~~~l~~~f~~a~ 144 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS----GSDFVEMFV----GV------GASRVRDLFEQAK 144 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----HHHHHHHHh----cc------cHHHHHHHHHHHH
Confidence 45588999999999999999998753322 21 11 001111110 00 0111122333344
Q ss_pred cCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHh-----hhCCCceEEcCC
Q 002458 95 CRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKVRG 151 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~-----~~~~~~~~~v~~ 151 (919)
...+.+|++|++|... .+..+....+.+ ..+..||.||....... ....+..++++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 4567899999985531 122333333211 23456666776543222 224567899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCc
Q 002458 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 152 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 189 (919)
.+.++..++|..+..+...... ....++++.+.|.
T Consensus 225 Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 9999999999888744322211 1234677777774
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.37 E-value=0.0033 Score=65.18 Aligned_cols=170 Identities=18% Similarity=0.166 Sum_probs=99.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHh--CCCCeeEEEEechhhhccCChH--HHHHHHHHHHhcccCccccchhhhHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLANVREVSVTRGLV--PLQEQLLSEVLMERDLIIWDVHKGIN 88 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~s~~~~l~--~l~~~ll~~~~~~~~~~~~~~~~~~~ 88 (919)
.+......||++|.|||+-|++++..+- +-|.+++.=.+. |...|.. ....+-++++......
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr~Kik~fakl~~~~~~---------- 121 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVREKIKNFAKLTVLLKR---------- 121 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchhhhhcCHHHHhhcccc----------
Confidence 4667888999999999999999998662 344444332221 1111211 0000001110000000
Q ss_pred HHHHHHcCCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChhhHhh--hCCCceEEcCCCCHHHHHHHHHHH
Q 002458 89 LIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEHVLKS--HGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~~~~~--~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
....-+..--.||||+++...+ |.++......+...+|.|..+-.-..... ..-...|..+.|.+++..+-+...
T Consensus 122 -~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 122 -SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred -ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHH
Confidence 0000011125788999987754 88888777767778887766655332211 122347899999999999999998
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCc-hhHHHHHHh
Q 002458 165 VSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (919)
Q Consensus 165 a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l~~ 198 (919)
+-+++..- ..+..+.|+++++|- --|+.++-+
T Consensus 201 a~~E~v~~--d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 201 ASKEGVDI--DDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 86554332 235678899999884 555555544
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.36 E-value=0.0019 Score=76.79 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEE--EeCChhhHhh-h-CCCceEEcCCCCHHHHHHH
Q 002458 87 INLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII--TSRDEHVLKS-H-GVTNTYKVRGLDYVEALQL 160 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIi--TTR~~~~~~~-~-~~~~~~~v~~L~~~ea~~L 160 (919)
+..+.+.+.++++.++-|+.|..+ .|+.+...+....+...|+| ||++...... . .....+.+.+++.+|..++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 445556666666666655443322 24444332222233344444 6665432111 1 1223678899999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh
Q 002458 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (919)
Q Consensus 161 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 198 (919)
+.+.+-..... -..+..+.|.+++..-+-|+..++.
T Consensus 362 l~~~a~~~~v~--ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 362 VLNAAEKINVH--LAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99877432211 1124445555555444555554443
No 162
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.33 E-value=0.0032 Score=67.79 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=82.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhc-cC-ChHHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV-TR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~-~~-~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
.-.+.++|||++|+|||.+|+++++.+...| +-++ ..+... .. .-.....+++.. .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~------------------A 203 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYRE------------------A 203 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHH------------------H
Confidence 4578999999999999999999999876543 2221 111111 00 111222222221 1
Q ss_pred HHH--HcCCcEEEEEeCCCCH------------HHH--HHHhcCC----------CC----CCCCcEEEEEeCChhhHhh
Q 002458 91 RWR--LCRKRVLVILDDVDQL------------EQL--QALVGNH----------DW----FGFGSRIIITSRDEHVLKS 140 (919)
Q Consensus 91 ~~~--L~~kk~LlVlDdv~~~------------~~l--~~l~~~~----------~~----~~~gsrIIiTTR~~~~~~~ 140 (919)
++. -+++.+.|++|++|.. .++ ..|+... .| ..++..||+||.+...+..
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 111 1467899999998422 111 2233211 12 2456778999987654332
Q ss_pred h-----CCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 141 H-----GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 141 ~-----~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
. ..+..|. .-+.++-.++++.+.-+.. .+. +...++++...|-|+
T Consensus 284 ALlRpGRfDk~i~--lPd~e~R~eIL~~~~r~~~-l~~---~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEKFYW--APTREDRIGVVHGIFRDDG-VSR---EDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCceeC--CCCHHHHHHHHHHHhccCC-CCH---HHHHHHHHcCCCCCc
Confidence 1 2344443 4567777888776654332 221 334556666666654
No 163
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.30 E-value=0.0016 Score=74.68 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=83.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+-|.++|++|+|||.+|+++++.+.-.| +..+... +.....++ ......+.++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------------l~~~~vGe------se~~l~~~f~~A 314 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------------LFGGIVGE------SESRMRQMIRIA 314 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH-------------hcccccCh------HHHHHHHHHHHH
Confidence 356788999999999999999999875332 2111111 11110100 000111222222
Q ss_pred HcCCcEEEEEeCCCCHHH--------------HHHHhcCCCCCCCCcEEEEEeCChhh-----HhhhCCCceEEcCCCCH
Q 002458 94 LCRKRVLVILDDVDQLEQ--------------LQALVGNHDWFGFGSRIIITSRDEHV-----LKSHGVTNTYKVRGLDY 154 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~~--------------l~~l~~~~~~~~~gsrIIiTTR~~~~-----~~~~~~~~~~~v~~L~~ 154 (919)
-...+++|++|++|..-. +..+.........+.-||.||.+... ......+..+.++..+.
T Consensus 315 ~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 315 EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 335789999999864311 11222211112334556667765532 22234577899999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCc
Q 002458 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 155 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 189 (919)
++..++|..+..+....... ......+++.+.|.
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~Gf 428 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCC
Confidence 99999999887543211100 11234556666554
No 164
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=0.00018 Score=72.65 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=98.8
Q ss_pred CCccceeeccCccccccc----cccccCccccceecccccccccc-----------cCccccCCCCCcEEEecCcCCCCc
Q 002458 445 VPNLERLNLEGCTRLLEV----HQSVGTLKRLILLNLKDCRNLVS-----------FPKNVCLMKSLKILCLCGCLKLEK 509 (919)
Q Consensus 445 l~~L~~L~L~~~~~~~~~----p~~l~~l~~L~~L~L~~n~~~~~-----------lp~~i~~l~~L~~L~Ls~~~~~~~ 509 (919)
+..+..++||||.+..+- ...|.+-.+|+..++++- +++. +...+-+++.|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 344555555555543332 223344455555555542 2221 112234677788888888777666
Q ss_pred Cccc----ccCCCCCcEeecCCCcccccCc-----c---------ccCCCCCcEEEeCCCCCCCCCCCcchhhcccccCC
Q 002458 510 LPQD----LGEVECLEELDVGGTAIRQIPP-----S---------IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (919)
Q Consensus 510 lp~~----l~~l~~L~~L~L~~n~i~~lp~-----~---------l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~ 571 (919)
+|+. +.+-+.|++|.+++|.+..+.. . ...-+.|+......|+...-...
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~------------ 175 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE------------ 175 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH------------
Confidence 6654 3455677888887776653221 1 12345666666666552110000
Q ss_pred CCCCCccccCCCCCCCCCCcEEecCCCCCCCCCC----CcccCCCCCCCeeeCCCCCCccCc-----HhhhccCCCcEEe
Q 002458 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI----PSDIGSLFSLEAIDLSGNNFFSLP-----SSINQLLKLKILC 642 (919)
Q Consensus 572 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----p~~l~~l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~ 642 (919)
..-..+..-..|+.+.+..|.+-...+ -..+..+.+|+.|||..|-|+... ..+...+.|+.|.
T Consensus 176 -------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 176 -------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred -------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 000002223578888888887422111 112345678888888888877332 2345566788888
Q ss_pred cCcCcc
Q 002458 643 LEKCRN 648 (919)
Q Consensus 643 L~~~~~ 648 (919)
+.+|-.
T Consensus 249 lnDCll 254 (388)
T COG5238 249 LNDCLL 254 (388)
T ss_pred ccchhh
Confidence 888863
No 165
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.0011 Score=69.98 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=28.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+-+.++|++|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999997765554566664
No 166
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.0011 Score=67.99 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=30.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEe
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 51 (919)
.++|+|..|.||||++..+......+|+.++.+..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 46799999999999999999999999977776653
No 167
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.17 E-value=0.013 Score=62.77 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=88.5
Q ss_pred hHHHHhHhcCCCC-eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHh-cccCcc
Q 002458 2 EKMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDLI 79 (919)
Q Consensus 2 ~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~-~~~~~~ 79 (919)
..+.+++...+.. ..+|.|+|-+|.|||.+.+++++... ...+|+..+ .......+.++++.+.. ...+..
T Consensus 16 ~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~----ecft~~~lle~IL~~~~~~d~dg~ 88 (438)
T KOG2543|consen 16 RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCV----ECFTYAILLEKILNKSQLADKDGD 88 (438)
T ss_pred HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehH----HhccHHHHHHHHHHHhccCCCchh
Confidence 3455666665543 35568999999999999999999763 235787633 24456677777777752 222211
Q ss_pred c-----cchhhhHHHHHH--HHc--CCcEEEEEeCCCCHHHHHHH-----hcCCCCCCCCcEEEEEeCCh---hhHhhhC
Q 002458 80 I-----WDVHKGINLIRW--RLC--RKRVLVILDDVDQLEQLQAL-----VGNHDWFGFGSRIIITSRDE---HVLKSHG 142 (919)
Q Consensus 80 ~-----~~~~~~~~~i~~--~L~--~kk~LlVlDdv~~~~~l~~l-----~~~~~~~~~gsrIIiTTR~~---~~~~~~~ 142 (919)
. .+..+.+..+++ ... +++++||||+++...+.++. ..-..-.....-+|+++-.. .....++
T Consensus 89 ~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g 168 (438)
T KOG2543|consen 89 KVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTG 168 (438)
T ss_pred hhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccC
Confidence 1 111112222222 122 46899999999888763322 11110011223344444432 1121123
Q ss_pred CCc--eEEcCCCCHHHHHHHHHHHh
Q 002458 143 VTN--TYKVRGLDYVEALQLFHLKV 165 (919)
Q Consensus 143 ~~~--~~~v~~L~~~ea~~Lf~~~a 165 (919)
... ++..+.-+.+|-.+++.+.-
T Consensus 169 ~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 169 TLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCCceEEecCCCCHHHHHHHHhcCC
Confidence 322 56678889999999987654
No 168
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.17 E-value=0.019 Score=58.61 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=54.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
..-|.+||..|.|||++++++.+.+..+- .-+..+ .+ .++ .+..+....++ -
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev---~k-~~L-------------------~~l~~l~~~l~--~ 103 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEV---SK-EDL-------------------GDLPELLDLLR--D 103 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEE---CH-HHh-------------------ccHHHHHHHHh--c
Confidence 45677899999999999999999886543 222211 11 011 11112222222 1
Q ss_pred cCCcEEEEEeCCC---CH---HHHHHHhcCC-CCCCCCcEEEEEeCChhhHhh
Q 002458 95 CRKRVLVILDDVD---QL---EQLQALVGNH-DWFGFGSRIIITSRDEHVLKS 140 (919)
Q Consensus 95 ~~kk~LlVlDdv~---~~---~~l~~l~~~~-~~~~~gsrIIiTTR~~~~~~~ 140 (919)
+..|++|.+||+. .. ..+.+++..- ........|..||--+|+.+.
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 3579999999972 22 2355554432 222234455566666666554
No 169
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0082 Score=68.55 Aligned_cols=137 Identities=23% Similarity=0.273 Sum_probs=82.2
Q ss_pred hcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHH
Q 002458 9 EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (919)
Q Consensus 9 ~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~ 88 (919)
..+.+..+=|..+|++|+|||++|+++++.-+..| +. +.. .++++...++ .+..+.
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----ls----vkg--------pEL~sk~vGe-------SEr~ir 517 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LS----VKG--------PELFSKYVGE-------SERAIR 517 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe-----ee----ccC--------HHHHHHhcCc-------hHHHHH
Confidence 34556678899999999999999999999865544 32 110 1222222211 112222
Q ss_pred H-HHHHHcCCcEEEEEeCCCCHH-------------HHHHHhcCCCCCCCCcEEEE---EeCChhh----HhhhCCCceE
Q 002458 89 L-IRWRLCRKRVLVILDDVDQLE-------------QLQALVGNHDWFGFGSRIII---TSRDEHV----LKSHGVTNTY 147 (919)
Q Consensus 89 ~-i~~~L~~kk~LlVlDdv~~~~-------------~l~~l~~~~~~~~~gsrIIi---TTR~~~~----~~~~~~~~~~ 147 (919)
. +++.-+-...+|.||.+|... .+..|+...+-......|+| |-|...+ +..-..++.+
T Consensus 518 ~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ii 597 (693)
T KOG0730|consen 518 EVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRII 597 (693)
T ss_pred HHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeE
Confidence 2 222333456888899875442 25555555553334444444 4443322 2222467889
Q ss_pred EcCCCCHHHHHHHHHHHhcCCC
Q 002458 148 KVRGLDYVEALQLFHLKVSNGK 169 (919)
Q Consensus 148 ~v~~L~~~ea~~Lf~~~a~~~~ 169 (919)
.|+.-+.+...++|+.++-+-.
T Consensus 598 yVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 598 YVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred eecCccHHHHHHHHHHHHhcCC
Confidence 9999999999999999985543
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.017 Score=62.80 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=90.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC---------------CCeeEEEEechhhhccCChHHHHHHHHHHHh-cccCc
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ---------------FEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDL 78 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~-~~~~~ 78 (919)
.+...++|+.|+||+++|.++++.+-.. ++...|+...... ..... -...+.... .....
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~-~g~~~---~~~~~~~~~~~~~~~ 101 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH-QGKLI---TASEAEEAGLKRKAP 101 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-ccccc---chhhhhhcccccccc
Confidence 4788999999999999999999865221 2222333311000 00000 000001100 00000
Q ss_pred cccchhhhHHHHHHHH-----cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhhh-CCCceEEc
Q 002458 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTYKV 149 (919)
Q Consensus 79 ~~~~~~~~~~~i~~~L-----~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~~-~~~~~~~v 149 (919)
..-.++ .++.+.+.+ .+++-++|+|+++... ...+|+..+...+ .+.+|++|.+ ..+.... .-...+++
T Consensus 102 ~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f 179 (314)
T PRK07399 102 PQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPF 179 (314)
T ss_pred ccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEec
Confidence 000011 122333333 2466788899986664 3444544443333 4455555544 4444432 33568999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
.++++++..+.+.+...... .. .....++..++|.|..+..+
T Consensus 180 ~~l~~~~~~~~L~~~~~~~~--~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 180 YRLSDEQLEQVLKRLGDEEI--LN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CCCCHHHHHHHHHHhhcccc--ch---hHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998752211 11 11357889999999765543
No 171
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.0013 Score=69.36 Aligned_cols=36 Identities=28% Similarity=0.184 Sum_probs=26.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
-..|.|+|++|+|||+||.++......+-..+.|+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346889999999999999999886544433444543
No 172
>PRK12377 putative replication protein; Provisional
Probab=97.15 E-value=0.0015 Score=68.04 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
...+.++|..|+|||.||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876655566665
No 173
>PRK06921 hypothetical protein; Provisional
Probab=97.15 E-value=0.0011 Score=70.34 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC-CCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 50 (919)
..-+.++|..|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987665 45567765
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.14 E-value=0.0022 Score=66.63 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+-++|..+-..-.++.|+|.+|+|||++|..++......-..++|++
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566667655566789999999999999999999887655667788886
No 175
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.14 E-value=0.0041 Score=76.02 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=70.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
.-+.++|++|+|||++|+.+++++...- ...+|..+......... ...+.++.+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~------------------~~g~~e~~l~~ 265 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK------------------YRGDFEERLKA 265 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc------------------ccchHHHHHHH
Confidence 3467999999999999999999874321 23344332211110000 00122223333
Q ss_pred HHHHH-cCCcEEEEEeCCCCHH-----------HHHHHhcCCCCCCCC-cEEEEEeCChhhHhh-------hCCCceEEc
Q 002458 90 IRWRL-CRKRVLVILDDVDQLE-----------QLQALVGNHDWFGFG-SRIIITSRDEHVLKS-------HGVTNTYKV 149 (919)
Q Consensus 90 i~~~L-~~kk~LlVlDdv~~~~-----------~l~~l~~~~~~~~~g-srIIiTTR~~~~~~~-------~~~~~~~~v 149 (919)
+.+.+ ..++.+|++|+++..- .-+-+.+.+ ..| -++|-+|..++.... ..-.+.+++
T Consensus 266 i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v 342 (731)
T TIGR02639 266 VVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDV 342 (731)
T ss_pred HHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEe
Confidence 33333 3468899999986432 122233322 223 355555553222110 112347899
Q ss_pred CCCCHHHHHHHHHHHh
Q 002458 150 RGLDYVEALQLFHLKV 165 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a 165 (919)
+.++.++..+++....
T Consensus 343 ~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 343 GEPSIEETVKILKGLK 358 (731)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998655
No 176
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.001 Score=69.04 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998766555566664
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.01 Score=65.66 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=78.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
.....|.+.|++|+|||+||..++.. ..|+.+--++. ..--++.+-.+ .......+.+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp----e~miG~sEsaK----------------c~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP----EDMIGLSESAK----------------CAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh----HHccCccHHHH----------------HHHHHHHHHH
Confidence 45677889999999999999999874 67876665541 11111111110 0011223334
Q ss_pred HHcCCcEEEEEeCCCCHHHHH------------HH---hcCCCCCCCCcE--EEEEeCChhhHhhhCC----CceEEcCC
Q 002458 93 RLCRKRVLVILDDVDQLEQLQ------------AL---VGNHDWFGFGSR--IIITSRDEHVLKSHGV----TNTYKVRG 151 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~l~------------~l---~~~~~~~~~gsr--IIiTTR~~~~~~~~~~----~~~~~v~~ 151 (919)
.-++.=-.||+||++..-+|- +| ....+ ..|-| |+-||..+.++..++. ...|.|+.
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p--pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP--PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC--CCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 445566789999997776533 22 22222 23444 4457777888887753 45899999
Q ss_pred CCH-HHHHHHHHHHh
Q 002458 152 LDY-VEALQLFHLKV 165 (919)
Q Consensus 152 L~~-~ea~~Lf~~~a 165 (919)
++. ++..+.+...-
T Consensus 672 l~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELN 686 (744)
T ss_pred cCchHHHHHHHHHcc
Confidence 987 77777776543
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.044 Score=59.36 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=62.2
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++.... -.+|+..+..-.+++.+|++|... .++.. ..-...+.+..++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 4567889999877643 445555444445678777777754 44433 2334588999999999998887531 1
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l~ 197 (919)
+ .+.+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1235678999999998665443
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.023 Score=61.40 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhh-CCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~~-~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ...++...+..-.+++.+|.+|.+. .++... .-...+.+..++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 345678889987664 3555665555445678777776654 444432 3356899999999999998875421
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
+ ....++..++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999876554
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.003 Score=74.37 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=29.9
Q ss_pred hHHHHhHhcCC---CCeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 2 EKMNGYLEAGL---DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 2 ~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 94 ~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 94 EEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45566665432 3457899999999999999999998653
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.06 E-value=6.4e-05 Score=68.10 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=50.6
Q ss_pred CCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhhhccCCCcEEecCcCcc
Q 002458 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (919)
Q Consensus 586 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 648 (919)
.++.++.|+|++|.+.+ +|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|..
T Consensus 75 kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 34567788888888654 88889999999999999999998898888888888888888773
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0011 Score=72.26 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.-+.++|..|+|||.||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66999999999999999999998766555667765
No 183
>PRK06526 transposase; Provisional
Probab=97.04 E-value=0.0011 Score=69.61 Aligned_cols=34 Identities=26% Similarity=0.087 Sum_probs=25.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 48 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 48 (919)
-+-|.|+|++|+|||+||.++......+--.+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3568999999999999999999876543333344
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.012 Score=64.75 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=46.6
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHH
Q 002458 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
+.+-++|+|+++.... ..+|...+.....++.+|.+|.+.. +... ..-...+++..++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4556788999866643 5556555554457888888877643 3332 233468999999999998888653
No 185
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.02 E-value=0.15 Score=56.45 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=67.2
Q ss_pred CcEEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHh----hh--CCCceEEcCCCCHHHHHH
Q 002458 97 KRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK----SH--GVTNTYKVRGLDYVEALQ 159 (919)
Q Consensus 97 kk~LlVlDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~----~~--~~~~~~~v~~L~~~ea~~ 159 (919)
+|-+||+||+.+. .+|.+.+.. ++-.+||++|-|....+ .. .+.+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3679999998332 234443333 45678999998864333 22 244577899999999999
Q ss_pred HHHHHhcCCCCC-------------C-----hhHHHHHHHHHHHhCCchhHHHHHHhhccC
Q 002458 160 LFHLKVSNGKQP-------------T-----DYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (919)
Q Consensus 160 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~l~~~L~~ 202 (919)
+...+....... + ....+-....+...||==.-|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 123344566778888888888888887765
No 186
>PRK04296 thymidine kinase; Provisional
Probab=97.01 E-value=0.0021 Score=64.55 Aligned_cols=111 Identities=19% Similarity=0.144 Sum_probs=62.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccC-ccccchhhhHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD-LIIWDVHKGINLIRWRL 94 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~L 94 (919)
.++.|+|..|.||||+|..++.+...+-..+.++... .....+.. .+.+++..... .......+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 4788999999999999999999876555444444210 01111111 12222110000 011223334444444 3
Q ss_pred cCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh
Q 002458 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE 135 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 135 (919)
.++.-+||+|.+.-. +++..+..... ..|..||+|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 345568999998653 44555544322 4689999999984
No 187
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.99 E-value=0.0048 Score=65.49 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
-|.|+|.+|+|||++|++++......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 56699999999999999999866433
No 188
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.037 Score=56.32 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=101.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
++-+++.++|.-|.|||.++|++....-+.=-.++.++ ....+...+...+..++.... .+........+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~ 120 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQP---KVNVNAVLEQIDR 120 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCc---cchhHHHHHHHHH
Confidence 34569999999999999999966654433222233333 112344556666666644321 2233333333333
Q ss_pred HH-----cCCc-EEEEEeCCCCHH--HHHHHh--cCCC-CCCCCcEEEEEeCCh-------hhHhhh--CCCceEEcCCC
Q 002458 93 RL-----CRKR-VLVILDDVDQLE--QLQALV--GNHD-WFGFGSRIIITSRDE-------HVLKSH--GVTNTYKVRGL 152 (919)
Q Consensus 93 ~L-----~~kk-~LlVlDdv~~~~--~l~~l~--~~~~-~~~~gsrIIiTTR~~-------~~~~~~--~~~~~~~v~~L 152 (919)
.| +++| +.+++|+.++.. +++.+. .... ....--+|+..-..+ .+.... ..+-.|++.++
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 32 4677 999999985542 233332 2221 111112344333322 011111 22223999999
Q ss_pred CHHHHHHHHHHHhcCCCCCChh-HHHHHHHHHHHhCCchhHHHHHHh
Q 002458 153 DYVEALQLFHLKVSNGKQPTDY-RVELSKYVVNYAGGLPLAIEVLGS 198 (919)
Q Consensus 153 ~~~ea~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~GlPLal~~l~~ 198 (919)
+.++...++.++..+...+.+- ..+....|.....|.|.++..++.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999999887655444433 345667788889999999887754
No 189
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0013 Score=63.88 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=53.0
Q ss_pred CCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcHhh-hccCCCcEEecCcCccCCcCCCCCCcccEeeccCC
Q 002458 589 SLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI-NQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDC 667 (919)
Q Consensus 589 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~lp~~L~~L~~~~c 667 (919)
+...+||++|.+. -...|..++.|..|.|.+|+|+.+...+ ..+++|+.|.|.+|. ++.+.++- -+..|
T Consensus 43 ~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~------pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLD------PLASC 112 (233)
T ss_pred ccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcc------hhccC
Confidence 3445555555532 1223445556666666666666555444 334556666666654 22222211 12346
Q ss_pred CccceecccccccCC--CCceeEecccccchhhhhhhhH
Q 002458 668 TSLETISAFAKLSRS--PNIALNFLNCFKLVEDQVSKDN 704 (919)
Q Consensus 668 ~~L~~l~~~~n~~~~--~~~~~~~~~~~~L~~l~ls~N~ 704 (919)
|.|+.|.+..|.... .-....+...|+|+.||...-.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 666666655542111 1123446667777777766543
No 190
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.99 E-value=0.002 Score=62.89 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=28.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
++.|+|.+|+||||+|..++.....+-..++|++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999997766555666765
No 191
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.98 E-value=0.0055 Score=75.51 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=69.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
.-+.++|.+|+||||+|+.+++++.... ...+|..+.......... ..+.++.+..
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~------------------~ge~e~~lk~ 270 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV------------------KGEFENRLKS 270 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc------------------chHHHHHHHH
Confidence 3456999999999999999999875432 122332222111100000 0111111122
Q ss_pred HHHHH--cCCcEEEEEeCCCCHH-------HHH---HHhcCCCCCCCC-cEEEEEeCChhhHhh-------hCCCceEEc
Q 002458 90 IRWRL--CRKRVLVILDDVDQLE-------QLQ---ALVGNHDWFGFG-SRIIITSRDEHVLKS-------HGVTNTYKV 149 (919)
Q Consensus 90 i~~~L--~~kk~LlVlDdv~~~~-------~l~---~l~~~~~~~~~g-srIIiTTR~~~~~~~-------~~~~~~~~v 149 (919)
+-+.+ .+++++|++|+++... +.+ .+.+.+ ..| -++|-||...+.... ..-.+.++|
T Consensus 271 ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v 347 (852)
T TIGR03345 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKV 347 (852)
T ss_pred HHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence 22212 2468999999985542 111 133322 233 566666664322111 112358999
Q ss_pred CCCCHHHHHHHHHHHh
Q 002458 150 RGLDYVEALQLFHLKV 165 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a 165 (919)
+.++.+++.+++....
T Consensus 348 ~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 348 EEPDEETAIRMLRGLA 363 (852)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999975444
No 192
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.035 Score=65.67 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ...+|...+....+...+|++|.+ ..+... ......++++.++.++..+.+...+-.....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 455678899997664 355555554443456777665544 334332 2234578999999999988887766433211
Q ss_pred ChhHHHHHHHHHHHhCCch-hHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLP-LAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlP-Lal~~l 196 (919)
...+....+++.++|.. .|+..+
T Consensus 198 --i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 --ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12355677888898865 444444
No 193
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.025 Score=66.56 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc-cc-cchhhh---HHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-II-WDVHKG---INL 89 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~-~~-~~~~~~---~~~ 89 (919)
.+.+.++|+.|+||||+|+.+++.+-..-.. .....+..+....+... ...+. .+ .....+ ++.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~---------~~~pC~~C~~C~~i~~g--~~~dv~eidaas~~~vd~ir~ 106 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP---------DGEPCNECEICKAITNG--SLMDVIEIDAASNNGVDEIRD 106 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---------CCCCCCccHHHHHHhcC--CCCCeEEeeccccCCHHHHHH
Confidence 4677889999999999999999865321100 00011111111111110 00000 00 000011 112
Q ss_pred HHHH-----HcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHH
Q 002458 90 IRWR-----LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQL 160 (919)
Q Consensus 90 i~~~-----L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~L 160 (919)
+.+. ..+++-++|+|+++.. ....+|...+........+|++|.. ..+... ..-...++...++.++..+.
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~ 186 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVER 186 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHH
Confidence 2222 1346678899999866 3466666555433445565655543 333322 12345789999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHhCCchhH
Q 002458 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 161 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 192 (919)
+.+.+-.....- ..+.+..+++.++|.+..
T Consensus 187 L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 187 LKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 888774433211 125567788888887653
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00035 Score=83.39 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred CCCCcEEEecCcCCCC-cCcccc-cCCCCCcEeecCCCccc--ccCccccCCCCCcEEEeCCCCCCCCCCCcchhhcccc
Q 002458 493 MKSLKILCLCGCLKLE-KLPQDL-GEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLL 568 (919)
Q Consensus 493 l~~L~~L~Ls~~~~~~-~lp~~l-~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~ 568 (919)
-.+|++|+++|..... ..|..+ ..+|+|+.|.+++-.+. ++-.-..++++|..||++++....
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n------------- 187 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN------------- 187 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-------------
Confidence 4689999999965442 234444 35789999999987665 333445778999999999987432
Q ss_pred cCCCCCCCccccCCCCCCCCCCcEEecCCCCCCCCCCCcccCCCCCCCeeeCCCCCCccCcH-------hhhccCCCcEE
Q 002458 569 LPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-------SINQLLKLKIL 641 (919)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-------~l~~l~~L~~L 641 (919)
+..++.+++|+.|.+.+=.+.+...-..+.+|++|+.||+|......-+. +-..||+|+.|
T Consensus 188 ------------l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 188 ------------LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred ------------cHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 23467888899988887664432334467789999999999986664442 22569999999
Q ss_pred ecCcCcc
Q 002458 642 CLEKCRN 648 (919)
Q Consensus 642 ~L~~~~~ 648 (919)
|.++...
T Consensus 256 DcSgTdi 262 (699)
T KOG3665|consen 256 DCSGTDI 262 (699)
T ss_pred ecCCcch
Confidence 9997653
No 195
>PTZ00202 tuzin; Provisional
Probab=96.95 E-value=0.047 Score=60.22 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=85.2
Q ss_pred hHHHHhHhcCC-CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccc
Q 002458 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (919)
Q Consensus 2 ~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~ 80 (919)
+++...|...+ ...+++.|.|++|+|||||++.+..... ...++.|.+ +..++...++..+..+...
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~-- 339 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVE-- 339 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcc--
Confidence 34555665433 3457999999999999999999997654 335665433 5578888888885432221
Q ss_pred cchhhhHHHHHHHH-----c-CCcEEEEEe--CCCCHHH----HHHHhcCCCCCCCCcEEEEEeCChhhHhh---hCCCc
Q 002458 81 WDVHKGINLIRWRL-----C-RKRVLVILD--DVDQLEQ----LQALVGNHDWFGFGSRIIITSRDEHVLKS---HGVTN 145 (919)
Q Consensus 81 ~~~~~~~~~i~~~L-----~-~kk~LlVlD--dv~~~~~----l~~l~~~~~~~~~gsrIIiTTR~~~~~~~---~~~~~ 145 (919)
...+....|.+.+ . +++.+||+- +-++... .-.|+.. ..-|.|++----+.+-.. ..--.
T Consensus 340 -~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~~~lprld 414 (550)
T PTZ00202 340 -ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIANTLLPRLD 414 (550)
T ss_pred -cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhcccCccce
Confidence 1123333333332 2 566776664 3333332 2233332 235667765443332111 11223
Q ss_pred eEEcCCCCHHHHHHHHHHH
Q 002458 146 TYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 146 ~~~v~~L~~~ea~~Lf~~~ 164 (919)
.|-|+.++.++|.++-.+.
T Consensus 415 f~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 415 FYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eEecCCCCHHHHHHHHhhc
Confidence 8999999999998876544
No 196
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.93 E-value=0.0028 Score=65.47 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+..+|..+-..-+++.|.|.+|+||||+|..++.....+-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566677655566789999999999999999999987755555677775
No 197
>PRK08118 topology modulation protein; Reviewed
Probab=96.92 E-value=0.00068 Score=66.49 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=26.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC---CCCeeEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD---QFEASSFL 49 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~ 49 (919)
+.|.|+|++|+||||+|+++++.+.- +|+..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 35889999999999999999998643 35555553
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.026 Score=61.20 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=90.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccc----cchhhhHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII----WDVHKGINLI 90 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~----~~~~~~~~~i 90 (919)
.....+.|+.|+||+++|++++..+-..-... ....+.......+... ...|... ....-+++.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~g--~HPD~~~i~p~~~~~I~id~i 92 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLFQAG--NHPDFHILEPIDNKDIGVDQV 92 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhcC--CCCCEEEEccccCCCCCHHHH
Confidence 46788999999999999999999653211000 0011111111111110 0000000 0000112222
Q ss_pred H---HHH-----cCCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHH
Q 002458 91 R---WRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEAL 158 (919)
Q Consensus 91 ~---~~L-----~~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~ 158 (919)
+ +.+ .+++-++|+|+++... .-.+++..+..-.+++.+|++|.+. .++.. ..-...+.+..++.++..
T Consensus 93 R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~ 172 (325)
T PRK06871 93 REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQAL 172 (325)
T ss_pred HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHH
Confidence 2 222 2456678899987764 3556665555546778888777765 44433 233468999999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
+.+...... . . +.+..++..++|.|+..
T Consensus 173 ~~L~~~~~~---~-~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 173 DWLQAQSSA---E-I---SEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHhcc---C-h---HHHHHHHHHcCCCHHHH
Confidence 999876411 1 1 23556788899999633
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.91 E-value=0.006 Score=74.83 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=83.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhH-HHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI-NLIRWR 93 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~-~~i~~~ 93 (919)
.+-|.++|++|+|||++|+++++.....| +.+. .. ++++...+ ..+..+ ..+...
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~-------------~l~~~~vG-------ese~~i~~~f~~A 542 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP-------------EILSKWVG-------ESEKAIREIFRKA 542 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH-------------HHhhcccC-------cHHHHHHHHHHHH
Confidence 45688999999999999999999865433 1111 00 11111111 111112 222333
Q ss_pred HcCCcEEEEEeCCCCHH--------------HHHHHhcCCCC--CCCCcEEEEEeCChhhHhh-----hCCCceEEcCCC
Q 002458 94 LCRKRVLVILDDVDQLE--------------QLQALVGNHDW--FGFGSRIIITSRDEHVLKS-----HGVTNTYKVRGL 152 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~--------------~l~~l~~~~~~--~~~gsrIIiTTR~~~~~~~-----~~~~~~~~v~~L 152 (919)
-...+.+|++|+++... .+..++...+. ...+.-||.||.....+.. -..+..+.++..
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 34567899999986431 13334333321 1234556667765543322 245678999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHhCCc
Q 002458 153 DYVEALQLFHLKVSNGKQP-TDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 153 ~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 189 (919)
+.++..++|..+..+.... ..+ ...+++.+.|.
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~ 656 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGY 656 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCC
Confidence 9999999998776433221 112 34566667665
No 200
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.85 E-value=0.0098 Score=73.66 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=73.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC-C-----CeeEEEEechhhhccCChHHHHHHHHHHHhccc
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-----~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~ 76 (919)
++.+.|+.. ..+-+.++|++|+|||++|+.++.++... - ...+|..+..... ...
T Consensus 190 ~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~-----------------ag~ 250 (821)
T CHL00095 190 RVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL-----------------AGT 250 (821)
T ss_pred HHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh-----------------ccC
Confidence 344444432 22345699999999999999999987432 1 2344443321111 000
Q ss_pred CccccchhhhHHH-HHHHHcCCcEEEEEeCCCCHH---------HHHHHhcCCCCCCC-CcEEEEEeCChhhHhh-----
Q 002458 77 DLIIWDVHKGINL-IRWRLCRKRVLVILDDVDQLE---------QLQALVGNHDWFGF-GSRIIITSRDEHVLKS----- 140 (919)
Q Consensus 77 ~~~~~~~~~~~~~-i~~~L~~kk~LlVlDdv~~~~---------~l~~l~~~~~~~~~-gsrIIiTTR~~~~~~~----- 140 (919)
. ...+.++.+.. +.+.-..++++|++|+++..- +...++... ... .-++|.+|........
T Consensus 251 ~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 251 K-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred C-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeCCHHHHHHHHhcCH
Confidence 0 01122222222 222223568999999985332 122222211 112 3466666665443211
Q ss_pred --hCCCceEEcCCCCHHHHHHHHHHH
Q 002458 141 --HGVTNTYKVRGLDYVEALQLFHLK 164 (919)
Q Consensus 141 --~~~~~~~~v~~L~~~ea~~Lf~~~ 164 (919)
......++++..+.++...+++..
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHH
Confidence 122347889999999988887653
No 201
>PRK04132 replication factor C small subunit; Provisional
Probab=96.85 E-value=0.026 Score=68.51 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCcchHHHHHHHHHHHH-hCCCCe-eEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHcCCcEE
Q 002458 23 MGGIGKTTLAKVLYNTL-KDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCRKRVL 100 (919)
Q Consensus 23 ~gGiGKTtLA~~v~~~~-~~~f~~-~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~~kk~L 100 (919)
+.|+||||+|.++++++ .+.+.. ..-+. .+...++..+. +++......... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------------CCCCCEE
Confidence 78999999999999986 333322 23332 22223443333 222221111100 0124579
Q ss_pred EEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHH
Q 002458 101 VILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRV 176 (919)
Q Consensus 101 lVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 176 (919)
+|+|++|... +..+|...........++|.+|.+.. +... ..-...+++++++.++-.+.+.+.+...... -..
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 9999998775 56666665554456788888777653 2222 2235689999999999998888776433221 113
Q ss_pred HHHHHHHHHhCCchhHH
Q 002458 177 ELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 177 ~~~~~i~~~~~GlPLal 193 (919)
+....+++.++|.+...
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 56788999999987443
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.022 Score=62.33 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... .-.+|+..+..-.+++.+|.+|.+. .++.. ..-.+.+.+..++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 566788899887664 3555555555445678777777764 44433 2334578999999999998886542 1 1
Q ss_pred ChhHHHHHHHHHHHhCCchhHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIE 194 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~ 194 (919)
+ .+.+..++..++|.|....
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 1336678999999996433
No 203
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.042 Score=60.08 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
+++-++|+|+++... ...+|+..+..-.+++.+|.+|.+ ..++.. ..-...+.+..++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 345577889886664 356666655555677777666655 444433 2334689999999999999997652 11
Q ss_pred ChhHHHHHHHHHHHhCCchhHHHHH
Q 002458 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlPLal~~l 196 (919)
+ ...++..++|.|.....+
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754443
No 204
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.83 E-value=0.0025 Score=66.81 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=56.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc---cccchh--------
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---IIWDVH-------- 84 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~---~~~~~~-------- 84 (919)
+-++|.|.+|+||||||+.+++.++.+|+..+++.-+.+. ...+.++.+++...-...... ...+..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999999998888888887765442 223444444444321101000 001110
Q ss_pred hhHHHHHHHH---cCCcEEEEEeCCCCHH
Q 002458 85 KGINLIRWRL---CRKRVLVILDDVDQLE 110 (919)
Q Consensus 85 ~~~~~i~~~L---~~kk~LlVlDdv~~~~ 110 (919)
...-.+.+.+ +++.+|+++||+-...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 0111233444 3889999999985544
No 205
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.82 E-value=0.011 Score=56.77 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=67.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHH--hc-c-------cC--ccccch
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEV--LM-E-------RD--LIIWDV 83 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~--~~-~-------~~--~~~~~~ 83 (919)
.+|-|++-.|.||||+|...+-+...+=-.+.++.-+... ...+-....+.+- .+ .. . .+ ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHH
Confidence 3678888889999999999988766554556665432221 1122222222220 00 00 0 00 000111
Q ss_pred hhhHHHHHHHHcC-CcEEEEEeCCCCH--------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 84 HKGINLIRWRLCR-KRVLVILDDVDQL--------EQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 84 ~~~~~~i~~~L~~-kk~LlVlDdv~~~--------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
.++.+..++.+.. +-=|+|||++... +++-.+.... .++..+|+|.|+..-.-....+.+-+++
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~p~~l~e~AD~VTEm~ 153 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNAPKELIEAADLVTEMR 153 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCCCHHHHHhCceeeecc
Confidence 2233444555544 4569999987333 3444444443 3578999999985322222234444444
No 206
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.81 E-value=0.0022 Score=62.48 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=26.3
Q ss_pred CcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCC-CCCccceeeccCc
Q 002458 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFT-GVPNLERLNLEGC 456 (919)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~l~~L~~L~L~~~ 456 (919)
+...+||++|.+..++ .+..++.|.+|.|++|.+...-|.+. .+++|..|.|.+|
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4445555555555442 24444555555555555544444432 2344555555544
No 207
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0093 Score=62.13 Aligned_cols=80 Identities=29% Similarity=0.364 Sum_probs=52.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH----hCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL----KDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
-|+|.++|++|.|||+|.+++++++ .++|.....+. + .-..+..+++++-. .-+....+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsESg-------KlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSESG-------KLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhhh-------hHHHHHHHHH
Confidence 4899999999999999999999965 35555555554 1 12344455555411 1244556677
Q ss_pred HHHHcCCc--EEEEEeCCCCH
Q 002458 91 RWRLCRKR--VLVILDDVDQL 109 (919)
Q Consensus 91 ~~~L~~kk--~LlVlDdv~~~ 109 (919)
.+.+..+. +.+.+|.|+..
T Consensus 242 ~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHH
Confidence 77777665 45557888444
No 208
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.014 Score=60.09 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=77.6
Q ss_pred EEEeCChhhHhhh--CCCceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHH
Q 002458 129 IITSRDEHVLKSH--GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVE 206 (919)
Q Consensus 129 IiTTR~~~~~~~~--~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~ 206 (919)
=-|||.-.+.... ...-+.+++--+.+|-.+...+.|..-+ .+-.++-+.+|+++..|-|--..-+-... .
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRV-----R 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRV-----R 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHH-----H
Confidence 3588865433221 1123677888899999999998883211 12233568899999999995332222221 1
Q ss_pred HHHHHHHH--HhcCCChhHHHHHHhhhccCChhhHHHhhhhccccCCC--CHHHHHHHHhhcCCCc-hhhHHHHhhcCCe
Q 002458 207 EWKSALNR--LQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNS-DIGIRELLDKSLI 281 (919)
Q Consensus 207 ~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~-~~~l~~L~~~sLi 281 (919)
++..+... +.........+.|.+-=.+|+...++.+.-+.-.+.|- ..+.+...+..+.-.. +..=--|+..++|
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi 308 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFI 308 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchh
Confidence 12111110 00001122344555555677777777777766555443 3455544443221111 1112235666777
Q ss_pred EEe
Q 002458 282 TIV 284 (919)
Q Consensus 282 ~~~ 284 (919)
+..
T Consensus 309 ~RT 311 (332)
T COG2255 309 QRT 311 (332)
T ss_pred hhC
Confidence 655
No 209
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.018 Score=66.03 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=86.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCC-eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.-|.|.|..|+|||+||+++++.+...-. .+.+++ +. ......+..+|+.+- ..+.+.+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs-~l~~~~~e~iQk~l~------------------~vfse~~ 491 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CS-TLDGSSLEKIQKFLN------------------NVFSEAL 491 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-ch-hccchhHHHHHHHHH------------------HHHHHHH
Confidence 46789999999999999999998764322 233332 11 112223444443332 2334456
Q ss_pred cCCcEEEEEeCCCCHHH---------------HHHHhcC-C-CCCCCCcE--EEEEeCChhhHhh-----hCCCceEEcC
Q 002458 95 CRKRVLVILDDVDQLEQ---------------LQALVGN-H-DWFGFGSR--IIITSRDEHVLKS-----HGVTNTYKVR 150 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~~---------------l~~l~~~-~-~~~~~gsr--IIiTTR~~~~~~~-----~~~~~~~~v~ 150 (919)
...+-+|||||++-... +..+... . .....+.+ +|-|....+-... .-...+..++
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67889999999854321 1111100 0 01123444 4445554332221 1223467899
Q ss_pred CCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCc-hhHHHHH
Q 002458 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVL 196 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 196 (919)
.++.++..++++....+.. .. ...+...-+..+|+|. |.-+.++
T Consensus 572 ap~~~~R~~IL~~~~s~~~-~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNL-SD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHHHhhh-hh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 9998888888776653322 11 1222233377788774 5555544
No 210
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.75 E-value=0.0033 Score=64.41 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.9
Q ss_pred hHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 7 YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 7 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+|..+-..-+++.|+|.+|+|||++|..++......-..++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45555556689999999999999999999887766667889987
No 211
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.021 Score=70.13 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=79.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+-|.++|++|+|||++|+++++.....| +.+. ..+.. ....+ .........+...
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~-------------~~~~g------~~~~~l~~lf~~a 267 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIM-------------SKYYG------ESEERLREIFKEA 267 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHh-------------ccccc------HHHHHHHHHHHHH
Confidence 346788999999999999999999775432 2221 11110 00000 0001112223333
Q ss_pred HcCCcEEEEEeCCCCHH-------------HHHHHhcCCCCC-CCCcEEEE-EeCChhhHh-h----hCCCceEEcCCCC
Q 002458 94 LCRKRVLVILDDVDQLE-------------QLQALVGNHDWF-GFGSRIII-TSRDEHVLK-S----HGVTNTYKVRGLD 153 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~-------------~l~~l~~~~~~~-~~gsrIIi-TTR~~~~~~-~----~~~~~~~~v~~L~ 153 (919)
....+.+|++|+++... ....+....... ..+..++| ||....-.. . ...+..+++...+
T Consensus 268 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~ 347 (733)
T TIGR01243 268 EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPD 347 (733)
T ss_pred HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcC
Confidence 44567889999985431 122232222111 23334444 554432211 1 1234578888889
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCch
Q 002458 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 190 (919)
.++..+++..+.-....... .....+++.+.|.-
T Consensus 348 ~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 348 KRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 99999999866532221111 12456777777754
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.73 E-value=0.0017 Score=64.41 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=26.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
-+-+.++|..|+|||.||.++.+.+..+--.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999987655444566664
No 213
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.71 E-value=0.0001 Score=66.73 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred cceEEeeCCCCCCCCCCC--CCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCcCCCCCCCCccceeeccCcc
Q 002458 380 LRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (919)
Q Consensus 380 L~~L~~~~~~~~~lp~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~~~ 457 (919)
|+..++++|.++++|..| .++.+++|+|++|.|..+|..+..++.|+.|+++.|.+...+.-+..+.+|-.|+..+|.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 344455556666666665 334677777777777777777777777777777777655544444445566666665544
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.70 E-value=0.0014 Score=60.60 Aligned_cols=23 Identities=52% Similarity=0.567 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 215
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0089 Score=59.34 Aligned_cols=36 Identities=42% Similarity=0.600 Sum_probs=31.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
..+|.+.|+.|+||||+|+++++.+..++...++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999988887777774
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.64 E-value=0.0042 Score=62.50 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.++|.++|+.|+||||.+.+++.+.+.+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999999999987765544455554
No 217
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.042 Score=62.76 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChhhHh--hhCCCceEEcCCCCHHHHHHHHHHHhcCCCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEHVLK--SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~~~~--~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 171 (919)
++.-+.|+|.|+-.. .+.+|+..+..-.+....|..|.+.+-.. ...-.+.|..+.++.++-...+...+-.....
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 455678899997664 48888888776667888888777764322 12345689999999999888888877443322
Q ss_pred ChhHHHHHHHHHHHhCCch
Q 002458 172 TDYRVELSKYVVNYAGGLP 190 (919)
Q Consensus 172 ~~~~~~~~~~i~~~~~GlP 190 (919)
...+....|++..+|-.
T Consensus 198 --~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 198 --IEEDALSLIARAAEGSL 214 (515)
T ss_pred --cCHHHHHHHHHHcCCCh
Confidence 22344556666666643
No 218
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.014 Score=60.67 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=38.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 50 (919)
+.+..+|..+-..-.++.|+|.+|+|||++|..++......- ..++|++
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 456677766666678999999999999999999987654444 5678876
No 219
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.61 E-value=0.12 Score=56.77 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=34.1
Q ss_pred hHHHHhHhcCC-CCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 2 ~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
+.+.+.+...+ ++..+|||.|.=|+||||+.+.+.+.+...
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35566666644 678999999999999999999999988776
No 220
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.58 E-value=0.024 Score=68.08 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=74.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
+-|.|+|++|+|||++|+.++......| +.+. ..+ +...... . ........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~---------~~~~~~g----~------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD---------FVEMFVG----V------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH---------hHHhhhc----c------cHHHHHHHHHHHHh
Confidence 3488999999999999999998765433 1121 110 1110000 0 00111222233334
Q ss_pred CCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCceEEcCCC
Q 002458 96 RKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNTYKVRGL 152 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~~~v~~L 152 (919)
..+.+|++|++|... .+..+....+-+ ..+.-+|.||.....+.. -..+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 567899999986651 133343333322 234455557776554332 134678899999
Q ss_pred CHHHHHHHHHHHhcC
Q 002458 153 DYVEALQLFHLKVSN 167 (919)
Q Consensus 153 ~~~ea~~Lf~~~a~~ 167 (919)
+.++..+++..+..+
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999888744
No 221
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.56 E-value=0.023 Score=70.42 Aligned_cols=130 Identities=8% Similarity=0.032 Sum_probs=68.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
.-+.++|.+|+|||++|+.++.++.... ...+|..+......... ...+.++....
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~------------------~~g~~e~~lk~ 261 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK------------------YRGEFEERLKG 261 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc------------------hhhhhHHHHHH
Confidence 3566999999999999999999875422 22333322221100000 00111122222
Q ss_pred HHHHH--cCCcEEEEEeCCCCHH---------HHHHHhcCCCCCCC-CcEEEEEeCChhhHhh-------hCCCceEEcC
Q 002458 90 IRWRL--CRKRVLVILDDVDQLE---------QLQALVGNHDWFGF-GSRIIITSRDEHVLKS-------HGVTNTYKVR 150 (919)
Q Consensus 90 i~~~L--~~kk~LlVlDdv~~~~---------~l~~l~~~~~~~~~-gsrIIiTTR~~~~~~~-------~~~~~~~~v~ 150 (919)
+.+.+ .+++++|++|+++... +...++.... .. .-++|-||........ ..-.+.+.+.
T Consensus 262 ~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~ 339 (857)
T PRK10865 262 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVA 339 (857)
T ss_pred HHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeC
Confidence 22221 2578999999986653 1222222211 23 3456655554432110 1122367788
Q ss_pred CCCHHHHHHHHHHHh
Q 002458 151 GLDYVEALQLFHLKV 165 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a 165 (919)
..+.++..++++...
T Consensus 340 eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 340 EPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHHHHHHh
Confidence 889999999887654
No 222
>PRK10536 hypothetical protein; Provisional
Probab=96.56 E-value=0.007 Score=62.47 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=59.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH-H-hCCCCeeEEEEechhhhc-----cCChHHHHH-------HHHHHHhcccCcc-c
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT-L-KDQFEASSFLANVREVSV-----TRGLVPLQE-------QLLSEVLMERDLI-I 80 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~s~-----~~~l~~l~~-------~ll~~~~~~~~~~-~ 80 (919)
.+|.+.|.+|.|||+||.++... + ...|+..+.....-+... ..++.+-.. +.+..+++..... .
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~ 154 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC 154 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 48999999999999999999874 3 445554443321111111 111111111 1111111110000 0
Q ss_pred cchhhh-HH-HHHHHHcCCc---EEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 002458 81 WDVHKG-IN-LIRWRLCRKR---VLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH 136 (919)
Q Consensus 81 ~~~~~~-~~-~i~~~L~~kk---~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 136 (919)
...+.+ +. .--..++++. -+||+|.+.+. .+...+.... +.+|++|+|--..+
T Consensus 155 ~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~Q 214 (262)
T PRK10536 155 LRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDITQ 214 (262)
T ss_pred HHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChhh
Confidence 000000 00 0012455554 49999998655 4566666553 68999999876543
No 223
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.54 E-value=0.01 Score=64.73 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=54.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC-CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc----hh-hhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD----VH-KGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~----~~-~~~~~ 89 (919)
+-++|+|.+|+|||||++.+++.+..+. +..+++.-+.+ ....+.++.+.+...+.......... .. .+...
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999886654 33333322322 23456667777666533221111100 11 11122
Q ss_pred HHHH-HcCCcEEEEEeCCCCHHH
Q 002458 90 IRWR-LCRKRVLVILDDVDQLEQ 111 (919)
Q Consensus 90 i~~~-L~~kk~LlVlDdv~~~~~ 111 (919)
.+.. -++++++||+|++....+
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHHHH
Confidence 2221 247899999999865543
No 224
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.034 Score=65.66 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=91.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.|=|.++|++|.|||-||++++-... +-|+. ++.. ++.+...+.. ....-......-
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGS--------EFvE~~~g~~------asrvr~lf~~ar 400 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGS--------EFVEMFVGVG------ASRVRDLFPLAR 400 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echH--------HHHHHhcccc------hHHHHHHHHHhh
Confidence 56688999999999999999998642 33443 1111 1111111000 001112222333
Q ss_pred cCCcEEEEEeCCCCHH-----------------HHHHHhcCCCCCCCCcEEE--EEeCChhhH-----hhhCCCceEEcC
Q 002458 95 CRKRVLVILDDVDQLE-----------------QLQALVGNHDWFGFGSRII--ITSRDEHVL-----KSHGVTNTYKVR 150 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~-----------------~l~~l~~~~~~~~~gsrII--iTTR~~~~~-----~~~~~~~~~~v~ 150 (919)
.+.+..|.+|++|... -+..+....+-+..+..|| -+|+...++ ..-..+..+.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 4567788888764321 2566666665554444333 355543333 333467789999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHH
Q 002458 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 193 (919)
.-+..+..++|.-|+-+.... .+..++++ ++....|++=|-
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 999999999999998654443 33445666 888888887553
No 225
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.073 Score=58.66 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=92.9
Q ss_pred HHHhHhc--CCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCe--eEEEEechhhhccCChHHHHHHHHHHHhcccCcc
Q 002458 4 MNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (919)
Q Consensus 4 l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~ 79 (919)
+.+++.. +.+..+-+-|.|-+|.|||.+...++.+....... ++++... . -....++...++..+.......
T Consensus 162 v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~-s---l~~~~aiF~kI~~~~~q~~~s~ 237 (529)
T KOG2227|consen 162 VREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT-S---LTEASAIFKKIFSSLLQDLVSP 237 (529)
T ss_pred HHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec-c---ccchHHHHHHHHHHHHHHhcCC
Confidence 4455443 33556788999999999999999999977554433 3555321 1 1233455666666654433332
Q ss_pred ccchhhhHHHHHHHHcCC--cEEEEEeCCCCHHH--HHHHhcCCCCC-CCCcEEEEEeCCh------hhHhhh-----CC
Q 002458 80 IWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQ--LQALVGNHDWF-GFGSRIIITSRDE------HVLKSH-----GV 143 (919)
Q Consensus 80 ~~~~~~~~~~i~~~L~~k--k~LlVlDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR~~------~~~~~~-----~~ 143 (919)
... .+....+.....+. -+|+|+|.+|.... -+.+..-+.|- -+++|+|+.--.. +.+... ..
T Consensus 238 ~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~ 316 (529)
T KOG2227|consen 238 GTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIK 316 (529)
T ss_pred chh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCC
Confidence 222 33445555555543 58999999887753 22222222332 2577777643321 111111 12
Q ss_pred CceEEcCCCCHHHHHHHHHHHhc
Q 002458 144 TNTYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 144 ~~~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
...+-.++-+.++-.+++..+.-
T Consensus 317 P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 317 PKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred CceeeecCCCHHHHHHHHHHHHh
Confidence 34677888999999999999873
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.023 Score=62.20 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
..++|+++|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4589999999999999999999987754433344443
No 227
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.52 E-value=0.0094 Score=62.29 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=36.0
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC------CCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 50 (919)
+.+-.+|..+-..-.++.|+|.+|+|||++|..++-..... -..++|++
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34556666555666899999999999999999997543222 36788886
No 228
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.51 E-value=0.039 Score=68.69 Aligned_cols=130 Identities=9% Similarity=0.073 Sum_probs=69.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
.-+.++|.+|+|||++|+.++.++...+ ...+|..+.... . . ... ...+.+.....
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l---------~----a----~~~-~~g~~e~~l~~ 256 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL---------I----A----GAK-YRGEFEERLKA 256 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH---------h----h----cch-hhhhHHHHHHH
Confidence 4456899999999999999999875432 223333222111 0 0 000 00112222222
Q ss_pred HHHHH-c-CCcEEEEEeCCCCHH---------HHHHHhcCCCCCCCC-cEEEEEeCChhhHh-------hhCCCceEEcC
Q 002458 90 IRWRL-C-RKRVLVILDDVDQLE---------QLQALVGNHDWFGFG-SRIIITSRDEHVLK-------SHGVTNTYKVR 150 (919)
Q Consensus 90 i~~~L-~-~kk~LlVlDdv~~~~---------~l~~l~~~~~~~~~g-srIIiTTR~~~~~~-------~~~~~~~~~v~ 150 (919)
+.+.+ + +++++|++|+++... +...++.... ..| -++|-+|.....-. ...-...+.|+
T Consensus 257 ~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~ 334 (852)
T TIGR03346 257 VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVD 334 (852)
T ss_pred HHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeC
Confidence 22222 2 468999999987543 1222222211 223 45555555443211 01223468899
Q ss_pred CCCHHHHHHHHHHHh
Q 002458 151 GLDYVEALQLFHLKV 165 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a 165 (919)
..+.++..+++....
T Consensus 335 ~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 335 EPTVEDTISILRGLK 349 (852)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987664
No 229
>PRK07667 uridine kinase; Provisional
Probab=96.47 E-value=0.0052 Score=61.95 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=33.8
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
+++...+........+|||.|.+|.||||+|+.+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45666776666667999999999999999999999987644
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.45 E-value=0.0037 Score=59.34 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~ 39 (919)
|.|+|.+|+|||++|+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 231
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.024 Score=64.04 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=81.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
..=|.+||++|+|||-||++|+|.-+-.| +.. + + -+++.....+ . .....+.+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV------K-G-PELlNkYVGE----S------ErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV------K-G-PELLNKYVGE----S------ERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Eee------c-C-HHHHHHHhhh----H------HHHHHHHHHHhh
Confidence 34477999999999999999999865444 431 1 1 1222222222 1 112233444555
Q ss_pred cCCcEEEEEeCCCCHH-------------HHHHHhcCCCCC--CCCcEEEEEeCChhh-----HhhhCCCceEEcCCCCH
Q 002458 95 CRKRVLVILDDVDQLE-------------QLQALVGNHDWF--GFGSRIIITSRDEHV-----LKSHGVTNTYKVRGLDY 154 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~-------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~-----~~~~~~~~~~~v~~L~~ 154 (919)
..-++.|.||.+|..- .+..|+..++-. ..|.-||-.|..+.+ +..-..+...-|+.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 5789999999985542 245555554422 246667766654433 33334677888999999
Q ss_pred HHHHHHHHHHhc
Q 002458 155 VEALQLFHLKVS 166 (919)
Q Consensus 155 ~ea~~Lf~~~a~ 166 (919)
+|-..+++...-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 232
>PRK07261 topology modulation protein; Provisional
Probab=96.44 E-value=0.011 Score=58.24 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 233
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.42 E-value=0.0084 Score=66.97 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=28.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC--CCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~ 50 (919)
+.|.++|++|+|||++|+++++.+.. .++.+.|+.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 56888999999999999999997743 455666665
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.011 Score=62.20 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456889999999999999999998874334555554
No 235
>PRK06762 hypothetical protein; Provisional
Probab=96.41 E-value=0.015 Score=57.02 Aligned_cols=24 Identities=50% Similarity=0.576 Sum_probs=22.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
++|+|.|+.|+||||+|+++.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999987
No 236
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.38 E-value=0.0056 Score=61.44 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH-H-hCCCCeeEEEEechhhhccCCh--HHH----------HHHHHHHHhcccCcc
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNT-L-KDQFEASSFLANVREVSVTRGL--VPL----------QEQLLSEVLMERDLI 79 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~s~~~~l--~~l----------~~~ll~~~~~~~~~~ 79 (919)
+..+|.+.|++|.|||.||.+.+-+ + ..+|+..++....-+....-+. -++ ..+.+..+...
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~---- 93 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGK---- 93 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-T----
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhCh----
Confidence 3458999999999999999988753 2 5778888877544322211111 011 11111111100
Q ss_pred ccchhhhHHHHH----------HHHcC---CcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 002458 80 IWDVHKGINLIR----------WRLCR---KRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH 136 (919)
Q Consensus 80 ~~~~~~~~~~i~----------~~L~~---kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 136 (919)
...+.+. ..+++ ....||+|++.+. +++..+.... |.|||||++--..+
T Consensus 94 -----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~Q 157 (205)
T PF02562_consen 94 -----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPSQ 157 (205)
T ss_dssp -----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE----
T ss_pred -----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCcee
Confidence 0111111 12333 3579999999665 4788888764 78999999977543
No 237
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.002 Score=65.41 Aligned_cols=62 Identities=32% Similarity=0.480 Sum_probs=39.2
Q ss_pred CCCCCCCcEEecCCC--CCCCCCCCcccCCCCCCCeeeCCCCCCc---cCcHhhhccCCCcEEecCcCc
Q 002458 584 FTGLSSLQTLDLSDC--NLLEGAIPSDIGSLFSLEAIDLSGNNFF---SLPSSINQLLKLKILCLEKCR 647 (919)
Q Consensus 584 l~~l~~L~~L~Ls~n--~l~~~~~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~~~ 647 (919)
+..+++|+.|.+|.| + ..+.++.....+++|++|++++|++. +++ .+..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRR-VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCccc-ccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCC
Confidence 445667777777777 4 23344444455577777777777766 333 45666677777777776
No 238
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.35 E-value=0.073 Score=53.98 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=89.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH-
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW- 92 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~- 92 (919)
..+-|..+|++|.|||.+|+++++...-. ++. +. ..+++.+..+ +-...+..+-+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp-----~l~----vk--------at~liGehVG-------dgar~Ihely~r 205 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVP-----LLL----VK--------ATELIGEHVG-------DGARRIHELYER 205 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCc-----eEE----ec--------hHHHHHHHhh-------hHHHHHHHHHHH
Confidence 47899999999999999999999975422 222 00 1233333221 11112222222
Q ss_pred HHcCCcEEEEEeCCCCHH--------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhhh---CCCceEEcCCCC
Q 002458 93 RLCRKRVLVILDDVDQLE--------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKSH---GVTNTYKVRGLD 153 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~--------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~~---~~~~~~~v~~L~ 153 (919)
.-+.-++.+.+|.+|... .+.+|+..++-. +.|..-|-.|....++... .....++..--+
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~ 285 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPN 285 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCC
Confidence 223468999999875542 256666655422 4566666666666555432 234567888889
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCc
Q 002458 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 189 (919)
++|..+++..++-+-.-+-... .+.++++.+|.
T Consensus 286 ~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 286 DEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred hHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 9999999999985433332211 45566666665
No 239
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.32 E-value=0.012 Score=57.71 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=63.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEech---hhhccCCh--HHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR---EVSVTRGL--VPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~---~~s~~~~l--~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
.+++|.|..|.|||||++.++..... ..+.+++...+ -+.+...+ ..+.+.+... .......-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHHHH
Confidence 58999999999999999999875432 23333332100 01111111 1122222110 111122222233345
Q ss_pred HHHHcCCcEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 91 RWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 91 ~~~L~~kk~LlVlDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
.+.+..++-++++|+. .....+..+.... +..||++|.+..... ..++++.++
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 5666677788889964 2223343444332 467888888876543 345565553
No 240
>PHA00729 NTP-binding motif containing protein
Probab=96.32 E-value=0.018 Score=58.46 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+...|+|.|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999999764
No 241
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0083 Score=60.16 Aligned_cols=31 Identities=45% Similarity=0.542 Sum_probs=27.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
..+.+|||.|.+|.||||+|++++..+....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~ 36 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCc
Confidence 4678999999999999999999999988663
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0047 Score=57.97 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=30.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC-CC-eeEEEEechh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-ASSFLANVRE 54 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~-~~~~~~~~~~ 54 (919)
--|+|.||+|+||||++..+.+.++.. |. +.+|...+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 358899999999999999999988665 65 3455555544
No 243
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.27 E-value=0.012 Score=56.24 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=60.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
.+++|.|..|.|||||++.+..... ...+.+++.....+.--.. ...-+...-.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 3355566542111110000 1111122223455666
Q ss_pred CCcEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEc
Q 002458 96 RKRVLVILDDVD------QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 96 ~kk~LlVlDdv~------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
.++-++++|+.. ....+..+.... +..||++|.+....... .++++.+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 777788999752 223344444332 34688888887655432 2345444
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.1 Score=56.95 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=48.2
Q ss_pred CcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCCCHHHHHHHHHHHhcCCCCCC
Q 002458 97 KRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPT 172 (919)
Q Consensus 97 kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~ 172 (919)
++-++|+|+++..+ .-..+.........+..+|++|.+.+ +... ......+.+..++.+++.+.+.... . .
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-A 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-C
Confidence 33344568776553 23333332222234676777777754 3322 2234588999999999998886542 1 1
Q ss_pred hhHHHHHHHHHHHhCCchhH
Q 002458 173 DYRVELSKYVVNYAGGLPLA 192 (919)
Q Consensus 173 ~~~~~~~~~i~~~~~GlPLa 192 (919)
... ..+..++|-|+.
T Consensus 188 ~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred cHH-----HHHHHhCCChhh
Confidence 111 123568898854
No 245
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.026 Score=57.07 Aligned_cols=129 Identities=18% Similarity=0.325 Sum_probs=70.8
Q ss_pred cCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHH
Q 002458 10 AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (919)
Q Consensus 10 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 89 (919)
.+-+-.+=|.++|++|.|||-+|++|+|+- ..||+..+.. ++.+.... ++..+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs--------elvqkyvg--------------egarm 258 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS--------ELVQKYVG--------------EGARM 258 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH--------HHHHHHhh--------------hhHHH
Confidence 344556778899999999999999999975 3577764422 12222221 23344
Q ss_pred HHHH---HcC-CcEEEEEeCCCCH--------------HH--HHHHhcCCCCCCC--CcEEEEEeCChhhHh-----hhC
Q 002458 90 IRWR---LCR-KRVLVILDDVDQL--------------EQ--LQALVGNHDWFGF--GSRIIITSRDEHVLK-----SHG 142 (919)
Q Consensus 90 i~~~---L~~-kk~LlVlDdv~~~--------------~~--l~~l~~~~~~~~~--gsrIIiTTR~~~~~~-----~~~ 142 (919)
+++. .+. |-++|.+|.++.. .| .-.+...++-|.+ ..+|+..|..+..+. .-.
T Consensus 259 vrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgr 338 (435)
T KOG0729|consen 259 VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGR 338 (435)
T ss_pred HHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcc
Confidence 4433 344 4588888977322 22 3344455554443 357887766443322 223
Q ss_pred CCceEEcCCCCHHHHHHHHHHHh
Q 002458 143 VTNTYKVRGLDYVEALQLFHLKV 165 (919)
Q Consensus 143 ~~~~~~v~~L~~~ea~~Lf~~~a 165 (919)
.+..++..--+-+-..++|+-++
T Consensus 339 ldrkvef~lpdlegrt~i~kiha 361 (435)
T KOG0729|consen 339 LDRKVEFGLPDLEGRTHIFKIHA 361 (435)
T ss_pred cccceeccCCcccccceeEEEec
Confidence 34444444444444444555444
No 246
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.26 E-value=0.025 Score=59.01 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=36.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+-++|..+-..-.++.|+|.+|+|||++|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455666666566789999999999999999998664433445677776
No 247
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.25 E-value=0.021 Score=63.31 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=37.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+++.+.|..+-..-.++.|.|.+|+|||||+.+++..+...-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666555455679999999999999999999987766555677775
No 248
>PRK08233 hypothetical protein; Provisional
Probab=96.19 E-value=0.015 Score=57.99 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999998764
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.18 E-value=0.024 Score=65.61 Aligned_cols=48 Identities=33% Similarity=0.503 Sum_probs=37.5
Q ss_pred ChHHHHhHhcC---CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 1 MEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 1 l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
++++..||... ....+++.+.|++|+||||.++.+++.+ .|+..-|..
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 46788888752 3346899999999999999999999986 355666653
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.18 E-value=0.013 Score=59.25 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=63.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEE-EEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF-LANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+|.|.|+.|.||||+++++...+.......++ +.+-.+.... .. ..+. ...+.. .+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~i----~q~~vg-~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSLI----NQREVG-LDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----ccee----eecccC-CCccCHHHHHHHHh
Confidence 368999999999999999998877655444433 3321111000 00 0000 011111 11223455677778
Q ss_pred cCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 002458 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~ 137 (919)
+...=.|++|.+.+.+.+....... ..|-.++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 8778899999998887766544432 245667777765543
No 251
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.17 E-value=0.034 Score=55.30 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 12 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+.++.-+.|.||+|+||||-+..+++.+-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45677888999999999999999998763
No 252
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.028 Score=65.83 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=78.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhh-HHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKG-INLIR 91 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~-~~~i~ 91 (919)
...+.|.++|++|.|||.||+++++.....|-.+..- ++..+.+.+ .+.. ...+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~vGe-----------sek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWVGE-----------SEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhccccch-----------HHHHHHHHHH
Confidence 4456889999999999999999999665444221110 111111111 1111 22333
Q ss_pred HHHcCCcEEEEEeCCCCHH-------------HHHHHhcCCCCCC--CCcEEEEEeCChhhHhh-----hCCCceEEcCC
Q 002458 92 WRLCRKRVLVILDDVDQLE-------------QLQALVGNHDWFG--FGSRIIITSRDEHVLKS-----HGVTNTYKVRG 151 (919)
Q Consensus 92 ~~L~~kk~LlVlDdv~~~~-------------~l~~l~~~~~~~~--~gsrIIiTTR~~~~~~~-----~~~~~~~~v~~ 151 (919)
...+..+..|.+|.+|... .+..++...+... .+..||-||-....... ...+..+.++.
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 3445788999999884432 2333333332122 33345555554433332 14567899999
Q ss_pred CCHHHHHHHHHHHhcCCC
Q 002458 152 LDYVEALQLFHLKVSNGK 169 (919)
Q Consensus 152 L~~~ea~~Lf~~~a~~~~ 169 (919)
-+.++..+.|..+.....
T Consensus 410 pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 410 PDLEERLEIFKIHLRDKK 427 (494)
T ss_pred CCHHHHHHHHHHHhcccC
Confidence 999999999999985433
No 253
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.033 Score=61.36 Aligned_cols=121 Identities=22% Similarity=0.195 Sum_probs=67.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC---------------------CeeEEEEechhhhccCC---hHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLANVREVSVTRG---LVPLQEQLLS 70 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~~~~~s~~~~---l~~l~~~ll~ 70 (919)
...+.++|+.|+||||+|.++++.+.... +.+..+. .+.... ..+..+++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~~~~~i~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDLRKIDIIVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----ccccCCCcchHHHHHHHHH
Confidence 44689999999999999999999775332 1222221 111111 2222222222
Q ss_pred HHhcccCccccchhhhHHHHHHHHcCCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCCh-hhHhh-hCCCce
Q 002458 71 EVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNT 146 (919)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~L~~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~-~~~~~-~~~~~~ 146 (919)
...... ..+++-++++|++|.... -.++...........++|++|.+. .+... ......
T Consensus 100 ~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~ 162 (325)
T COG0470 100 FLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQR 162 (325)
T ss_pred HhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhccee
Confidence 211000 035678899999987754 455555555456788888888854 33332 123346
Q ss_pred EEcCCCCHHH
Q 002458 147 YKVRGLDYVE 156 (919)
Q Consensus 147 ~~v~~L~~~e 156 (919)
+++.+.+..+
T Consensus 163 i~f~~~~~~~ 172 (325)
T COG0470 163 IRFKPPSRLE 172 (325)
T ss_pred eecCCchHHH
Confidence 6666633333
No 254
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.15 E-value=0.029 Score=67.96 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
-+.++|.+|+|||++|+.++.++...- +..+|..+. . .++. .. ....+.++....+
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~----~lla----G~-~~~Ge~e~rl~~l 270 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G----SLLA----GT-KYRGDFEKRFKAL 270 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H----HHhc----cc-chhhhHHHHHHHH
Confidence 346899999999999999998763321 222332111 1 1110 00 0011222333333
Q ss_pred HHHH-cCCcEEEEEeCCCCH----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-------hCCCceEEcCCC
Q 002458 91 RWRL-CRKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKS-------HGVTNTYKVRGL 152 (919)
Q Consensus 91 ~~~L-~~kk~LlVlDdv~~~----------~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~-------~~~~~~~~v~~L 152 (919)
.+.+ +.++.+|++|+++.. .+...+...... ...-++|-+|........ ..-.+.++|+.+
T Consensus 271 ~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~eP 349 (758)
T PRK11034 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEP 349 (758)
T ss_pred HHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCC
Confidence 3333 346789999998643 122222221110 123455555543332111 112348999999
Q ss_pred CHHHHHHHHHHHh
Q 002458 153 DYVEALQLFHLKV 165 (919)
Q Consensus 153 ~~~ea~~Lf~~~a 165 (919)
+.+++.+++....
T Consensus 350 s~~~~~~IL~~~~ 362 (758)
T PRK11034 350 SIEETVQIINGLK 362 (758)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 255
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.045 Score=60.93 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998664
No 256
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.11 E-value=0.036 Score=57.93 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=37.8
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+-++|..+-..-.++.|.|.+|+|||++|..+......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4566677766677789999999999999999987664334456777876
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.032 Score=54.99 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=65.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc---c-----ccchhhhH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---I-----IWDVHKGI 87 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~---~-----~~~~~~~~ 87 (919)
.+++|.|..|.|||||.+.++.... ...+.+++... .... ......... ..-+...... . ...-+...
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-LDLESLRKN-IAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-cCHHHHHhh-EEEEcCCchhccchHHHHhhCHHHHHH
Confidence 5899999999999999999988653 33455555421 1100 000000000 0000000000 0 00111112
Q ss_pred HHHHHHHcCCcEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 88 NLIRWRLCRKRVLVILDDVD------QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 88 ~~i~~~L~~kk~LlVlDdv~------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
-.+.+.+..++-++++|+.. ..+++..+..... .+..||++|.+...... .++++.+.
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 168 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD 168 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence 23555666788899999752 2333444444332 35778899988876653 55565553
No 258
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.05 E-value=0.018 Score=62.27 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=29.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 457889999999999999999998865544456664
No 259
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.05 E-value=0.034 Score=56.09 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
||||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999988643
No 260
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.04 E-value=0.069 Score=52.06 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-hCCCceEEcCCC
Q 002458 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGL 152 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~-~~~~-~~~~~~~~v~~L 152 (919)
+++-++|+|+++... ...+|+..+.....++++|++|++.. +... ..-...+.++++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 456788999997654 35566555554467999999998764 3322 223346666654
No 261
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.021 Score=59.03 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=70.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEe--chhhhccCChHHHHHHHHHHHhcccC------ccccchhhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN--VREVSVTRGLVPLQEQLLSEVLMERD------LIIWDVHKG 86 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~s~~~~l~~l~~~ll~~~~~~~~------~~~~~~~~~ 86 (919)
-.++||+|..|+||||+|+.+..-.... .+.+++.. +...+ .....+...+++..+....+ .....-+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4689999999999999999999866433 34444432 11111 22233344555555332211 111111222
Q ss_pred HHHHHHHHcCCcEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh
Q 002458 87 INLIRWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH 141 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~ 141 (919)
.-.|.+.|.-++-++|.|.. .-..|+-.+...+. ...|-..+..|-|-.+....
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 23567788899999999964 22234333333322 12467788888887776654
No 262
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.02 E-value=0.06 Score=66.36 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=25.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
-+++.++|++|+|||++|+.+++.+...|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45799999999999999999999886554
No 263
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.067 Score=60.61 Aligned_cols=130 Identities=21% Similarity=0.235 Sum_probs=74.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhH-HHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGI-NLIRW 92 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~-~~i~~ 92 (919)
-.|=|.++|++|+|||.||++++.+..- -|+. ++. -++.+.+.++ .++.+ ..+.+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~----isA--------peivSGvSGE-------SEkkiRelF~~ 277 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLS----ISA--------PEIVSGVSGE-------SEKKIRELFDQ 277 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEe----ecc--------hhhhcccCcc-------cHHHHHHHHHH
Confidence 3577889999999999999999998743 3333 111 1222222222 12222 23334
Q ss_pred HHcCCcEEEEEeCCCCHH--------H-----HHHHhcCCCC------CCCCcEEEE-EeCChhhHh----hhCCCceEE
Q 002458 93 RLCRKRVLVILDDVDQLE--------Q-----LQALVGNHDW------FGFGSRIII-TSRDEHVLK----SHGVTNTYK 148 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~--------~-----l~~l~~~~~~------~~~gsrIIi-TTR~~~~~~----~~~~~~~~~ 148 (919)
.-..-++++++|++|... + +..|....+. +|.+.-||= |+|...+-. .-..+..+.
T Consensus 278 A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~ 357 (802)
T KOG0733|consen 278 AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREIC 357 (802)
T ss_pred HhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceee
Confidence 445679999999986542 1 2223222211 133333332 556443322 223566788
Q ss_pred cCCCCHHHHHHHHHHHhcC
Q 002458 149 VRGLDYVEALQLFHLKVSN 167 (919)
Q Consensus 149 v~~L~~~ea~~Lf~~~a~~ 167 (919)
+..-++.+-.++++..+-+
T Consensus 358 l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 358 LGVPSETAREEILRIICRG 376 (802)
T ss_pred ecCCchHHHHHHHHHHHhh
Confidence 8888888888888877754
No 264
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.01 Score=61.32 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=31.4
Q ss_pred hHHHHhHhc-CCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 2 EKMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 2 ~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
++|.+.+.. ......+|+|.|.+|+||||+|+++.+.+...
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 344444432 34578899999999999999999999988644
No 265
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.99 E-value=0.052 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 266
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.98 E-value=0.094 Score=65.10 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=25.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
.++.++|+.|+|||++|+++++.+...-...+.+
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i 632 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI 632 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 4788999999999999999998764433333333
No 267
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.95 E-value=0.033 Score=58.85 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc----c-ccchhhhH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL----I-IWDVHKGI 87 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~----~-~~~~~~~~ 87 (919)
.+.+-++|+|..|.||||+.+.++..++.. .+.+++.. +.+.......++...+ .. ..+.+. + ........
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~-~~-~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGCV-NG-VPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHHh-cc-cccccccccccccccchHHH
Confidence 346789999999999999999999877543 33444421 1111000111221111 00 111110 0 11111122
Q ss_pred HHHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 002458 88 NLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLK 139 (919)
Q Consensus 88 ~~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~ 139 (919)
.+..-.+...+=++++|.+...+.+..+..... .|..||+||-+..+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 222222335788999999988888877766542 5888999999766533
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.95 E-value=0.032 Score=59.80 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCC--CCeeEEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA 50 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 50 (919)
..++|+|+|++|+||||++..++..+..+ -..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35799999999999999999999876533 13444454
No 269
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.058 Score=62.55 Aligned_cols=135 Identities=21% Similarity=0.286 Sum_probs=76.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccc-hhhhHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD-VHKGINLIRWR 93 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~-~~~~~~~i~~~ 93 (919)
-.+++++|++|||||.||+.+++.+...|-... +--+|+.+.- -+.+..-+.. +...++.++ .
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAEI--------------RGHRRTYIGamPGrIiQ~mk-k 413 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAEI--------------RGHRRTYIGAMPGKIIQGMK-K 413 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHHh--------------ccccccccccCChHHHHHHH-H
Confidence 479999999999999999999999987774322 2223322211 1111111111 122223333 3
Q ss_pred HcCCcEEEEEeCCCCHHH----------HHHHhcCCC-CCC--------CCcEEE-EEeCCh-h-h-HhhhCCCceEEcC
Q 002458 94 LCRKRVLVILDDVDQLEQ----------LQALVGNHD-WFG--------FGSRII-ITSRDE-H-V-LKSHGVTNTYKVR 150 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~~~----------l~~l~~~~~-~~~--------~gsrII-iTTR~~-~-~-~~~~~~~~~~~v~ 150 (919)
.+.+.-+++||.+|.... ++-|-+... .|. -=|.|+ |||-+. + + .....-..++++.
T Consensus 414 a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 414 AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLS 493 (782)
T ss_pred hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeec
Confidence 445778899999866542 333322211 010 124444 455432 1 1 1122334699999
Q ss_pred CCCHHHHHHHHHHHh
Q 002458 151 GLDYVEALQLFHLKV 165 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a 165 (919)
+-+++|-+++-++|.
T Consensus 494 gYt~~EKl~IAk~~L 508 (782)
T COG0466 494 GYTEDEKLEIAKRHL 508 (782)
T ss_pred CCChHHHHHHHHHhc
Confidence 999999999888775
No 270
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.00059 Score=79.77 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=15.5
Q ss_pred CCccceeeccCcccccc--ccccccCccccceecccc
Q 002458 445 VPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKD 479 (919)
Q Consensus 445 l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~L~~ 479 (919)
+++|+.|.+.+|..... +-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555555443333 223334444444444444
No 271
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0044 Score=63.01 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=57.6
Q ss_pred ccCccccceecccccccccccCccccCCCCCcEEEecCc--CCCCcCcccccCCCCCcEeecCCCcccccC--ccccCCC
Q 002458 466 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC--LKLEKLPQDLGEVECLEELDVGGTAIRQIP--PSIVQLV 541 (919)
Q Consensus 466 l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~ 541 (919)
...+..|+.|++.++.+++. . .+..|++|++|.++.| .....++.....+++|++|++++|.|+.+. ..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-T-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec-c-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33455666676766654332 1 2446788888888888 556666666667788999999998887521 1345667
Q ss_pred CCcEEEeCCCC
Q 002458 542 NLKIFSLHGCK 552 (919)
Q Consensus 542 ~L~~L~L~~~~ 552 (919)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 78888888876
No 272
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.92 E-value=0.059 Score=54.20 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=26.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCe
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 45 (919)
..-|.+||--|+||+.|++++.+.+.++.-.
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3457899999999999999999998877655
No 273
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.92 E-value=0.04 Score=57.27 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=36.1
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+-+++..+-..-.++.|.|.+|+||||+|..+......+-+.++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555555556689999999999999999987764434456778876
No 274
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.89 E-value=0.0064 Score=56.61 Aligned_cols=22 Identities=59% Similarity=0.830 Sum_probs=20.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~ 39 (919)
|+|.|+.|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.87 E-value=0.026 Score=60.94 Aligned_cols=48 Identities=29% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 3 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.+-.+|. .+-+.-+++-|+|++|+||||||..++.....+-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3445555 34456689999999999999999988876655556677875
No 276
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.86 E-value=0.04 Score=52.41 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 277
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.84 E-value=0.049 Score=57.42 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=81.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhh--ccCChHHHHHHHHHHHhcccCccccchhhhHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS--VTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s--~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~ 91 (919)
+..-|.|+|+.|.|||+|......+ .+.|...+.+....... .+-.+..+..|+..++- .......+..+....+-
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~-~~~k~~gsfte~l~~lL 125 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELN-RIVKSFGSFTENLSKLL 125 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHh-hhheeecccchhHHHHH
Confidence 3455789999999999998776665 33343334433222211 12234445555554422 22223344444455555
Q ss_pred HHHcC------CcEEEEEeCCCCHHH------HHHHhc-CCCCCCCCcEEEEEeCCh-------hhHhhhCCCceEEcCC
Q 002458 92 WRLCR------KRVLVILDDVDQLEQ------LQALVG-NHDWFGFGSRIIITSRDE-------HVLKSHGVTNTYKVRG 151 (919)
Q Consensus 92 ~~L~~------kk~LlVlDdv~~~~~------l~~l~~-~~~~~~~gsrIIiTTR~~-------~~~~~~~~~~~~~v~~ 151 (919)
..|+. -++.+|+|.+|-... +-.+.. ......|-+-|-+|||-. +|........++-.+.
T Consensus 126 ~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~ 205 (408)
T KOG2228|consen 126 EALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPS 205 (408)
T ss_pred HHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCC
Confidence 55542 368999998754432 111111 111124667788999953 3333333334666777
Q ss_pred CCHHHHHHHHHHHh
Q 002458 152 LDYVEALQLFHLKV 165 (919)
Q Consensus 152 L~~~ea~~Lf~~~a 165 (919)
++-++-.+++++..
T Consensus 206 ~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 206 LPLGDYVDLYRKLL 219 (408)
T ss_pred CChHHHHHHHHHHh
Confidence 77777777776654
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.83 E-value=0.064 Score=60.71 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
..++|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 468999999999999999999998776543234433
No 279
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.83 E-value=0.012 Score=56.25 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=30.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.+|-|.|.+|.||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999999988777777775
No 280
>PRK04040 adenylate kinase; Provisional
Probab=95.80 E-value=0.013 Score=58.72 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
++|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999885
No 281
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.79 E-value=0.059 Score=57.28 Aligned_cols=38 Identities=34% Similarity=0.388 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
...++|+++|++|+||||++..++..+..+-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999987765533444443
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.78 E-value=0.028 Score=60.68 Aligned_cols=48 Identities=27% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 3 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.|-.+|. .+-+.-+++-|+|++|+||||||..++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3455555 34456689999999999999999998876655556778886
No 283
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.76 E-value=0.029 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
.|.+.|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999987544
No 284
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.76 E-value=0.18 Score=54.82 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=33.6
Q ss_pred eEEcCCCCHHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHhCCchhHH
Q 002458 146 TYKVRGLDYVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAI 193 (919)
Q Consensus 146 ~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 193 (919)
.++|++++.+|+..++..++-.+-... ...+...++..-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998875443322 223344555666669999654
No 285
>PRK09354 recA recombinase A; Provisional
Probab=95.75 E-value=0.032 Score=60.78 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=56.4
Q ss_pred HHHHhHh-cCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHH---HHHHhcccCc
Q 002458 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL---LSEVLMERDL 78 (919)
Q Consensus 3 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~l---l~~~~~~~~~ 78 (919)
.|-.+|. .+-..-+++-|+|++|+||||||..++......-..++|++.-... .. ...+++ +..++- .
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~----~~-~~a~~lGvdld~lli---~ 118 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL----DP-VYAKKLGVDIDNLLV---S 118 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch----HH-HHHHHcCCCHHHeEE---e
Confidence 3455565 4445668999999999999999999887666666678888632111 11 111111 111111 1
Q ss_pred cccchhhhHHHHHHHHc-CCcEEEEEeCCC
Q 002458 79 IIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (919)
Q Consensus 79 ~~~~~~~~~~~i~~~L~-~kk~LlVlDdv~ 107 (919)
.+...++....+....+ +.--+||+|.|.
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 12234444555554443 356789999874
No 286
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0016 Score=76.13 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=63.0
Q ss_pred cCCCCCcEEecCCCCCCCcC---CCCCCCCccceeeccCc-ccccccc----ccccCccccceecccccccccc-cCccc
Q 002458 420 KPLKELKFMNLSHSCNLIRT---PDFTGVPNLERLNLEGC-TRLLEVH----QSVGTLKRLILLNLKDCRNLVS-FPKNV 490 (919)
Q Consensus 420 ~~l~~L~~L~Ls~n~~~~~~---~~~~~l~~L~~L~L~~~-~~~~~~p----~~l~~l~~L~~L~L~~n~~~~~-lp~~i 490 (919)
..++.|+.|.+..+...... +....+++|+.|++++| ......+ .....+++|+.|+++.|...+. .-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34789999999988766652 34678999999999984 2222222 2234457777777777763221 11111
Q ss_pred -cCCCCCcEEEecCcCC-CCc-CcccccCCCCCcEeecCCC
Q 002458 491 -CLMKSLKILCLCGCLK-LEK-LPQDLGEVECLEELDVGGT 528 (919)
Q Consensus 491 -~~l~~L~~L~Ls~~~~-~~~-lp~~l~~l~~L~~L~L~~n 528 (919)
..+++|++|.+.+|.. +.. +-.....+++|++|+++++
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 1256677777666653 211 2222344555666666554
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.75 E-value=0.058 Score=53.70 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=66.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEec--hhhhc---cCChHHHHHHHHHHHhccc--Cccccch---hh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--REVSV---TRGLVPLQEQLLSEVLMER--DLIIWDV---HK 85 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~s~---~~~l~~l~~~ll~~~~~~~--~~~~~~~---~~ 85 (919)
.+++|.|..|.|||||++.++.... ...+.+++... ..... ...+ ...-+++..+.-.. +...... +.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i-~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKI-AYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHH-hHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 5899999999999999999987543 34555665421 11000 0001 11111233211110 1111111 12
Q ss_pred hHHHHHHHHcCCcEEEEEeCCC------CHHHHHHHhcCCCCCCC-CcEEEEEeCChhhHhhhCCCceEEc
Q 002458 86 GINLIRWRLCRKRVLVILDDVD------QLEQLQALVGNHDWFGF-GSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 86 ~~~~i~~~L~~kk~LlVlDdv~------~~~~l~~l~~~~~~~~~-gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
..-.+.+.+...+-++++|+.. ..+.+..+..... .. |..||++|.+....... .+.++.+
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 2233556666788888999752 2233333333321 22 67889999887655332 2344444
No 288
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.15 Score=51.24 Aligned_cols=127 Identities=17% Similarity=0.288 Sum_probs=77.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
.+.+=|.++|++|.|||-||++|++.- .||+..+.. .++.+..+.+ +.+++++
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht------~c~firvsg-------selvqk~ige--------------gsrmvre 231 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG-------SELVQKYIGE--------------GSRMVRE 231 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech-------HHHHHHHhhh--------------hHHHHHH
Confidence 456778899999999999999999864 244433221 1233333322 2233333
Q ss_pred HH----cCCcEEEEEeCCCCHH--------------H--HHHHhcCCCCC--CCCcEEEEEeCCh-----hhHhhhCCCc
Q 002458 93 RL----CRKRVLVILDDVDQLE--------------Q--LQALVGNHDWF--GFGSRIIITSRDE-----HVLKSHGVTN 145 (919)
Q Consensus 93 ~L----~~kk~LlVlDdv~~~~--------------~--l~~l~~~~~~~--~~gsrIIiTTR~~-----~~~~~~~~~~ 145 (919)
.. .+-+-.|..|.+|... | .-.++..++-| ....+||..|..- .++..-..+.
T Consensus 232 lfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridr 311 (404)
T KOG0728|consen 232 LFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDR 311 (404)
T ss_pred HHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccc
Confidence 21 3456788888875542 1 22344444433 3567888877643 3333345677
Q ss_pred eEEcCCCCHHHHHHHHHHHhc
Q 002458 146 TYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 146 ~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
.++.++-+++...++++-+..
T Consensus 312 kiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccCCCCCHHHHHHHHHHhhh
Confidence 899999998888888876653
No 289
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.74 E-value=0.0069 Score=55.23 Aligned_cols=29 Identities=41% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCee
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 46 (919)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999988877653
No 290
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.71 E-value=0.044 Score=59.96 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCC------CeeEEEE
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 50 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 50 (919)
.+..+|..+-..-.++-|+|.+|+|||++|..++-...... ..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34455554445568899999999999999999886543211 3678886
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.70 E-value=0.045 Score=53.29 Aligned_cols=132 Identities=16% Similarity=0.032 Sum_probs=66.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhc-cc-------C--ccccchhh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM-ER-------D--LIIWDVHK 85 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~-~~-------~--~~~~~~~~ 85 (919)
.+|-|++-.|.||||.|..++-+...+=-.++.+.-.... ...+-....+.+.-.+.. .. + .......+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5788888899999999998888665443344433322111 111222222221000000 00 0 00011223
Q ss_pred hHHHHHHHHcC-CcEEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcCC
Q 002458 86 GINLIRWRLCR-KRVLVILDDVD--------QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRG 151 (919)
Q Consensus 86 ~~~~i~~~L~~-kk~LlVlDdv~--------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~~ 151 (919)
+.+..++.+.. +-=|||||.+. +.+++-.++... .++..||+|-|+..-.-..-.+.+-++..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 34445555554 44599999873 333444444443 46789999999863222222344445443
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.69 E-value=0.067 Score=53.14 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=64.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHH--------------HHHHHHhcccCcccc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE--------------QLLSEVLMERDLIIW 81 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~--------------~ll~~~~~~~~~~~~ 81 (919)
.+++|.|..|.|||||++.++..... ..+.+++... ..... ...... .+...+ .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i----~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNL----GRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhh----cccCC
Confidence 58999999999999999999875432 2445555421 11000 000000 000000 00011
Q ss_pred chhhhHHHHHHHHcCCcEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 82 DVHKGINLIRWRLCRKRVLVILDDVDQ------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 82 ~~~~~~~~i~~~L~~kk~LlVlDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
.-+...-.+.+.+..++-++++|+... .+.+..+.... ..+..||++|.+...... .++++.+.
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 111222334556667778889997532 22333333332 236788999998876642 45565553
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.69 E-value=0.034 Score=55.01 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=64.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCcc--------ccchhhhH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI--------IWDVHKGI 87 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~--------~~~~~~~~ 87 (919)
.+++|.|..|.|||||.+.++.... ...+.+++... .... .........+. -+......- ...-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DISQ-WDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Eccc-CCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 5899999999999999999987543 23455555321 1110 01111111100 000000000 01111122
Q ss_pred HHHHHHHcCCcEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 88 NLIRWRLCRKRVLVILDDVD------QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 88 ~~i~~~L~~kk~LlVlDdv~------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
-.+.+.+..++-++++|+.. ...++..+..... ..|..||++|.+..... . .++++.+.
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 23455566677788999752 2233333333322 24778999998887664 3 55566553
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.69 E-value=0.042 Score=54.27 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=61.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccC--ChHHHHHHHHHHHhcc---cCccccchh---hh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR--GLVPLQEQLLSEVLME---RDLIIWDVH---KG 86 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~--~l~~l~~~ll~~~~~~---~~~~~~~~~---~~ 86 (919)
-.+++|+|+.|+|||||.+.+... .+.+.+.......... ... -+.+++..+.-. .+....... ..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~-~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFI-DQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEE-hHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 358999999999999999988631 1111111000000000 000 013344442211 111122221 12
Q ss_pred HHHHHHHHcCC--cEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 87 INLIRWRLCRK--RVLVILDDVDQ------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 87 ~~~i~~~L~~k--k~LlVlDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
.-.+.+.+..+ +-++++|.... .+++........ ..|..||++|.+.+... . .+.++.+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~-~-~d~i~~l~ 162 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLS-S-ADWIIDFG 162 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEC
Confidence 22344555566 67888897522 222333333221 24778999999887653 2 55566553
No 295
>PRK08356 hypothetical protein; Provisional
Probab=95.69 E-value=0.078 Score=53.54 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEEcCCcchHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLY 36 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~ 36 (919)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 296
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.3 Score=50.26 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=112.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhC------CCCeeEEEEechh------hhcc---------CCh--HHHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLANVRE------VSVT---------RGL--VPLQEQLL 69 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~s~~---------~~l--~~l~~~ll 69 (919)
.+..-..++|+.|.||-|.+..+.+++-+ +-+...|...... ++.. .|. +.+.++++
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 56777889999999999999999886633 2344455432111 1100 011 22334444
Q ss_pred HHHhcccCccccchhhhHHHHHHHHcCCcE-EEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh--hhHhhhCCC
Q 002458 70 SEVLMERDLIIWDVHKGINLIRWRLCRKRV-LVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE--HVLKSHGVT 144 (919)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~~L~~kk~-LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~--~~~~~~~~~ 144 (919)
.++.+...... -..+.+ ++|+-.+|... .-.+|...-.-....+|+|+..-.. -+...-.-.
T Consensus 112 KevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 112 KEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhe
Confidence 44322221111 012233 45555555442 2233333222234577888743322 111111223
Q ss_pred ceEEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCch-hHHHHHHhh-ccC---------CCHHHHHHHHH
Q 002458 145 NTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP-LAIEVLGSF-LCG---------RSVEEWKSALN 213 (919)
Q Consensus 145 ~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l~~~-L~~---------~~~~~w~~~l~ 213 (919)
-.+++...+++|-...+++.+-+..-.-+ .+++++|+++++|+- .||-++-.. +.+ -..-+|+-++.
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHH
Confidence 47899999999999999988855443222 578999999998863 444443221 111 13568998887
Q ss_pred HHh-----cCCChhHHHHHHhhhccC
Q 002458 214 RLQ-----EAPNEKVLKVLRISYDGL 234 (919)
Q Consensus 214 ~l~-----~~~~~~i~~~l~~sy~~L 234 (919)
+.. +.....+.++-..-|+-|
T Consensus 257 e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 257 EIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 653 334455555555556655
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.65 E-value=0.1 Score=51.54 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=26.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
++.+.|++|+||||+++.++..+...-..+..++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999999999988765533344443
No 298
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.65 E-value=0.023 Score=55.51 Aligned_cols=123 Identities=19% Similarity=0.167 Sum_probs=63.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
.+++|.|..|.|||||.+.++.... ...+.+++.... ... ....+ .......- ......-+...-.+.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~~----~~~~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-ASPRD----ARRAGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CCHHH----HHhcCeEE-EEecCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 345666664311 110 01111 01100000 0001111222234455666
Q ss_pred CCcEEEEEeCCC------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEc
Q 002458 96 RKRVLVILDDVD------QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 96 ~kk~LlVlDdv~------~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
.++-++++|+.. ..+.+..+..... ..|..||++|.+...+... .+.++.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 777888899752 2223333332221 2477889999987654432 2344444
No 299
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.61 E-value=0.036 Score=62.09 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=33.1
Q ss_pred ChHHHHhHh-----cCCCCeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 1 MEKMNGYLE-----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 1 l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
|+++..||. ...-+-||..|.|++|+||||.++.++..+.
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 467888888 3345678999999999999999999998653
No 300
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.58 E-value=0.057 Score=61.76 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=37.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556666655555679999999999999999999987754445677776
No 301
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.57 E-value=0.12 Score=58.61 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh--CCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 50 (919)
-++++++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36899999999999999999987665 3334555554
No 302
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.54 E-value=0.019 Score=56.33 Aligned_cols=41 Identities=29% Similarity=0.280 Sum_probs=30.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh-CCCCeeEEEEechhhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVS 56 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s 56 (919)
..++.+.|+.|+|||.+|+++++.+. ......+-+ |..+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhccc
Confidence 35788999999999999999999887 565555544 444333
No 303
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.54 E-value=0.059 Score=54.42 Aligned_cols=109 Identities=22% Similarity=0.186 Sum_probs=53.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHH------HHHhcccCccccchhhhHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL------SEVLMERDLIIWDVHKGIN 88 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll------~~~~~~~~~~~~~~~~~~~ 88 (919)
-+++.|.|.+|.||||+++.+...+...=..++++.-... ....+.+..- ...+.............
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~-----Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~-- 90 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK-----AAKELREKTGIEAQTIHSFLYRIPNGDDEGRPE-- 90 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH-----HHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC--
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH-----HHHHHHHhhCcchhhHHHHHhcCCccccccccc--
Confidence 3678899999999999999998877655334444431111 1111222210 00010000000000000
Q ss_pred HHHHHHcCCcEEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 002458 89 LIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHVL 138 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~~~ 138 (919)
..++-+||+|++... .++..+..... ..|+|+|+.--..++.
T Consensus 91 ------~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 91 ------LPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQLP 134 (196)
T ss_dssp -------TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSHH
T ss_pred ------CCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchhc
Confidence 123458999997544 35666665443 3588988877665543
No 304
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.036 Score=57.70 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=68.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
-...++|||++|.|||-+|++|+.++.-.| +-.+.. .+.+. .+. +....|+++
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf-----l~v~ss------------~lv~k-------yiG---EsaRlIRem 217 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF-----LKVVSS------------ALVDK-------YIG---ESARLIRDM 217 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce-----EEeeHh------------hhhhh-------hcc---cHHHHHHHH
Confidence 357899999999999999999999885444 221110 01111 001 112233332
Q ss_pred H----cCCcEEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----hCCCce
Q 002458 94 L----CRKRVLVILDDVDQLE----------------QLQALVGNHDWF--GFGSRIIITSRDEHVLKS-----HGVTNT 146 (919)
Q Consensus 94 L----~~kk~LlVlDdv~~~~----------------~l~~l~~~~~~~--~~gsrIIiTTR~~~~~~~-----~~~~~~ 146 (919)
. ...++.|.+|++|... .+-.|+.....+ -...++|+||-+...+.. -..+..
T Consensus 218 f~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 218 FRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRK 297 (388)
T ss_pred HHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccce
Confidence 2 2356888899885431 133333333211 246789999998765443 234667
Q ss_pred EEcCCCCHHHHHHHHH
Q 002458 147 YKVRGLDYVEALQLFH 162 (919)
Q Consensus 147 ~~v~~L~~~ea~~Lf~ 162 (919)
|+.+-.+.......++
T Consensus 298 ~~iPlpne~~r~~I~K 313 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILK 313 (388)
T ss_pred eccCCcchhhceeeEe
Confidence 8777444444444333
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.12 Score=56.52 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
..++|+++|+.|+||||++..++..+..+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999886654434455554
No 306
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.52 E-value=0.055 Score=53.47 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHH--HHHhcccC---------ccccc
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL--SEVLMERD---------LIIWD 82 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll--~~~~~~~~---------~~~~~ 82 (919)
....|-|+|-.|-||||.|..++-+...+=-.+..+.-..... ..+-....+.+- ........ .....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 3468899999999999999998887655444445444222110 112222222210 00000000 00011
Q ss_pred hhhhHHHHHHHHcC-CcEEEEEeCCCC--------HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 002458 83 VHKGINLIRWRLCR-KRVLVILDDVDQ--------LEQLQALVGNHDWFGFGSRIIITSRDE 135 (919)
Q Consensus 83 ~~~~~~~i~~~L~~-kk~LlVlDdv~~--------~~~l~~l~~~~~~~~~gsrIIiTTR~~ 135 (919)
..++....++.+.. +-=|||||.+-. .+++-.++... .++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r---p~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR---PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC---CCCCEEEEECCCC
Confidence 22234445555544 456999998732 33344444432 4678999999986
No 307
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.51 E-value=0.092 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+|.|.|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999774
No 308
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.50 E-value=0.079 Score=64.80 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=69.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCcccc-chhhhHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW-DVHKGINLIRW 92 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~-~~~~~~~~i~~ 92 (919)
...+++++|++|+||||+|+.++..+...|-... +..++ +...+. +....-.. ......+.++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~------d~~~i~--------g~~~~~~g~~~G~~~~~l~~ 412 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVR------DEAEIR--------GHRRTYIGSMPGKLIQKMAK 412 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCC------CHHHhc--------cchhccCCCCCcHHHHHHHh
Confidence 3468999999999999999999997765442221 11111 111110 00000000 01112222322
Q ss_pred HHcCCcEEEEEeCCCCHHH------HHHHhcCCCC---------------CCCCcEEEEEeCChhhHhh-hCCCceEEcC
Q 002458 93 RLCRKRVLVILDDVDQLEQ------LQALVGNHDW---------------FGFGSRIIITSRDEHVLKS-HGVTNTYKVR 150 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~------l~~l~~~~~~---------------~~~gsrIIiTTR~~~~~~~-~~~~~~~~v~ 150 (919)
.....-+++||.+|.... ..++...++. .-...-+|.|+....+... .+-..++++.
T Consensus 413 -~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~ 491 (784)
T PRK10787 413 -VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLS 491 (784)
T ss_pred -cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecC
Confidence 122344688999855432 2333332210 0123344445544332111 1223478999
Q ss_pred CCCHHHHHHHHHHHh
Q 002458 151 GLDYVEALQLFHLKV 165 (919)
Q Consensus 151 ~L~~~ea~~Lf~~~a 165 (919)
+++.+|-.++.+++.
T Consensus 492 ~~t~eek~~Ia~~~L 506 (784)
T PRK10787 492 GYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999998888776
No 309
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.50 E-value=0.02 Score=46.81 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|+|.|..|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 310
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.043 Score=65.31 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=63.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.......|+.|||||.||++++..+-+.=+..+-+ |..+...++. .+.+.+... .+---++ ...+.+..
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHs--------VSrLIGaPP-GYVGyee-GG~LTEaV 589 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHS--------VSRLIGAPP-GYVGYEE-GGQLTEAV 589 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHH--------HHHHhCCCC-CCceecc-ccchhHhh
Confidence 56777899999999999999999775433444444 3333333332 333333322 2212222 34566677
Q ss_pred cCCcE-EEEEeCCCCH--HHHHHHhcCCCCC----CC-------CcEEEEEeC
Q 002458 95 CRKRV-LVILDDVDQL--EQLQALVGNHDWF----GF-------GSRIIITSR 133 (919)
Q Consensus 95 ~~kk~-LlVlDdv~~~--~~l~~l~~~~~~~----~~-------gsrIIiTTR 133 (919)
++++| +|.||.|+.. +-++-+.+.++.. +. .+-||+||-
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 78876 7778999544 4455555544322 22 355677776
No 311
>PRK14974 cell division protein FtsY; Provisional
Probab=95.47 E-value=0.15 Score=55.57 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
..++|+++|+.|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998876544
No 312
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.45 E-value=0.13 Score=50.53 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=44.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchh---hhHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH---KGINLIRWR 93 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~---~~~~~i~~~ 93 (919)
+|.|.|.+|.||||+|..+..+... ...++... ...-.+.++.+... ...++......+ +....+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~~~~~e~~~ri~~h-~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----QPFDDEMAARIAHH-RQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----CCChHHHHHHHHHH-HhcCCCCCeEecccccHHHHHHhh
Confidence 6899999999999999999876532 23454411 12234455565544 222333222222 223333332
Q ss_pred HcCCcEEEEEeCC
Q 002458 94 LCRKRVLVILDDV 106 (919)
Q Consensus 94 L~~kk~LlVlDdv 106 (919)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 332 336888986
No 313
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.45 E-value=0.15 Score=62.64 Aligned_cols=26 Identities=42% Similarity=0.463 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..++.++|+.|+|||++|+.+++.+.
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhc
Confidence 34678999999999999999999773
No 314
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.44 E-value=0.045 Score=58.34 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=27.0
Q ss_pred cEEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh
Q 002458 98 RVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (919)
Q Consensus 98 k~LlVlDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~ 135 (919)
+.+||+|...+.. ++..+.... |+||||+.|--..
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~a 388 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDPA 388 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCHH
Confidence 5789999997764 577776653 8999999987644
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.02 Score=55.55 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=66.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
.+++|.|..|.|||||++.+...+. ...+.+++.... ... ....... ..+.--. ....-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~-~~~~~~~----~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK-LPLEELR----RRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc-CCHHHHH----hceEEEe--eCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987653 345666664321 110 0011111 1000000 01111222233556666
Q ss_pred CCcEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 96 RKRVLVILDDVDQ------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 96 ~kk~LlVlDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
..+-++++|+... ...+..+..... ..+..+|++|-+....... .++++.+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 7788899997632 223333333222 2257789999887766543 34555543
No 316
>PRK04328 hypothetical protein; Provisional
Probab=95.44 E-value=0.063 Score=56.46 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.3
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+.+-++|..+-..-.++.|.|.+|.|||++|..+......+-+.++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455666655556689999999999999999987765434456677776
No 317
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.42 E-value=0.029 Score=59.13 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=32.1
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHH--hCC----CCeeEEEE
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL--KDQ----FEASSFLA 50 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~----f~~~~~~~ 50 (919)
.|-++|..+-..-.+.=|+|.+|+|||+||..++-.. ... =..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 4555564433334588899999999999998886533 221 23477776
No 318
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.42 E-value=0.014 Score=59.75 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999987
No 319
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.047 Score=53.46 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=25.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASS 47 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 47 (919)
+.|.+.|.+|+||||+|+++++.+++.-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46778999999999999999998776544433
No 320
>PRK03839 putative kinase; Provisional
Probab=95.41 E-value=0.012 Score=58.64 Aligned_cols=24 Identities=46% Similarity=0.715 Sum_probs=22.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.|.|.|++|+||||+|+++++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999874
No 321
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.11 Score=57.30 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=28.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC--CeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~ 50 (919)
-++++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 47999999999999999999998765443 3455554
No 322
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.37 E-value=0.018 Score=57.64 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=57.2
Q ss_pred HHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchh
Q 002458 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH 84 (919)
Q Consensus 5 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~ 84 (919)
.++|...-..-..++|.|..|.||||+++++...+... ...+.+.+..+...... ....-.............
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~~~~~~~~~~~~~~~~ 87 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWVRLVTRPGNVEGSGEV 87 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEEEEEEecCCCCCCCcc
Confidence 33443322334689999999999999999999876543 33444443322211100 000000000000001112
Q ss_pred hhHHHHHHHHcCCcEEEEEeCCCCHHHHHHHh
Q 002458 85 KGINLIRWRLCRKRVLVILDDVDQLEQLQALV 116 (919)
Q Consensus 85 ~~~~~i~~~L~~kk~LlVlDdv~~~~~l~~l~ 116 (919)
...+.++..++..+=.++++.+.+.+.++.+.
T Consensus 88 ~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 88 TMADLLRSALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CHHHHHHHHhccCCCEEEEEccCcHHHHHHHH
Confidence 34456667777778888899998887665543
No 323
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.073 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.+++|.|..|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 324
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.35 E-value=0.069 Score=61.11 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=36.7
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+++..+|..+-..-.++.|.|.+|+|||||+..++.....+-..++|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555666555555679999999999999999999876654434567775
No 325
>PRK13695 putative NTPase; Provisional
Probab=95.34 E-value=0.056 Score=53.49 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=24.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhC-CCCeeEEE
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 49 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~ 49 (919)
.|+|.|.+|+||||+++.+++.+.. .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999999987653 34433343
No 326
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.13 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.++++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 327
>PTZ00301 uridine kinase; Provisional
Probab=95.33 E-value=0.015 Score=59.18 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
..+|||.|.+|.||||+|+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 47999999999999999999998775443
No 328
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.32 E-value=0.065 Score=66.29 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=24.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
..++.++|+.|+|||.+|+++++.+...
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4578899999999999999999977443
No 329
>PRK10867 signal recognition particle protein; Provisional
Probab=95.32 E-value=0.16 Score=57.45 Aligned_cols=28 Identities=39% Similarity=0.457 Sum_probs=24.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
..+|.++|.+|+||||.|..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6899999999999999999998877655
No 330
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.099 Score=55.19 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=36.7
Q ss_pred HHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEe
Q 002458 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (919)
Q Consensus 5 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 51 (919)
-.+|..+-..-+++=|+|+.|.||||+|.+++-..+..-..++|++.
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 34444344556899999999999999999988777666668899973
No 331
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.014 Score=58.14 Aligned_cols=129 Identities=15% Similarity=0.207 Sum_probs=63.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccC-ChHHHHHHHHHHHhcccCc----c--------ccc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDL----I--------IWD 82 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~l~~l~~~ll~~~~~~~~~----~--------~~~ 82 (919)
.+++|.|..|.|||||++.++..+ ....+.+.+... ...... ........+. -+...... . ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~-~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGE-DLTDLEDELPPLRRRIG-MVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCE-EccccchhHHHHhhcEE-EEecCCccCCCCCHHHheeecCCH
Confidence 589999999999999999998644 234555555321 111000 0001110000 00000000 0 000
Q ss_pred hhhhHHHHHHHHcCCcEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEc
Q 002458 83 VHKGINLIRWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 83 ~~~~~~~i~~~L~~kk~LlVlDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
-+...-.+...+..++=++++|+. .....+..+...... ..|..||++|.+.+..... .++++.+
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 112222345666777888899975 222333333333211 1267788888887665532 3455554
No 332
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.28 E-value=0.082 Score=54.56 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE--e-chhh-hccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA--N-VREV-SVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--~-~~~~-s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
|.|.|++|+||||+|+.+++++. + .+++ + +++. .....+....++++.. . .....+.....+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g--~---~~is~gdllr~~~~~~t~lg~~i~~~~~~----G--~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN--L---KHINMGNILREEIKAKTTIGKEIQKVVTS----G--NLVPDNLVIAIVKDE 77 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C---cEEECChHHHHHhhcCChHHHHHHHHHHc----C--CcCCHHHHHHHHHHH
Confidence 88999999999999999998763 2 2222 1 1111 1111222223333222 1 112223345566666
Q ss_pred HcC----CcEEEEEeCC-CCHHHHHHHh
Q 002458 94 LCR----KRVLVILDDV-DQLEQLQALV 116 (919)
Q Consensus 94 L~~----kk~LlVlDdv-~~~~~l~~l~ 116 (919)
+.. ...-+|||+. .+..|.+.+.
T Consensus 78 l~~~~~~~~~g~iLDGfPRt~~Qa~~l~ 105 (229)
T PTZ00088 78 IAKVTDDCFKGFILDGFPRNLKQCKELG 105 (229)
T ss_pred HHhhccccCceEEEecCCCCHHHHHHHH
Confidence 643 3456899998 6667766654
No 333
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.28 E-value=0.056 Score=57.24 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=55.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
-.+|.|.|..|.||||+++++...+...-..++.+.+..+.... +.. + ..............++..|
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~~--------q----~~v~~~~~~~~~~~l~~~l 146 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GIN--------Q----VQVNEKAGLTFARGLRAIL 146 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cce--------E----EEeCCcCCcCHHHHHHHHh
Confidence 35899999999999999999988775433345555544332211 110 0 0000000113456777888
Q ss_pred cCCcEEEEEeCCCCHHHHHHHh
Q 002458 95 CRKRVLVILDDVDQLEQLQALV 116 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~~l~~l~ 116 (919)
+...=.|+++++.+.+......
T Consensus 147 R~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 147 RQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred ccCCCEEEeccCCCHHHHHHHH
Confidence 8888899999999988755443
No 334
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.86 Score=49.03 Aligned_cols=155 Identities=9% Similarity=0.088 Sum_probs=87.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCC---------C-eeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF---------E-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH 84 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------~-~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~ 84 (919)
.++..++|..|+||+++|+++.+.+-... + ...+++ ... ..-.+.++. ++...+.-.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir-~l~~~~~~~--------- 84 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFL-SAINKLYFS--------- 84 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHH-HHHHHhccC---------
Confidence 46777999999999999999999872111 1 111121 000 111111111 111111000
Q ss_pred hhHHHHHHHHcCCcEEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEeCC-hhhHhh-hCCCceEEcCCCCHHHHHHH
Q 002458 85 KGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQL 160 (919)
Q Consensus 85 ~~~~~i~~~L~~kk~LlVlDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~-~~~~~~-~~~~~~~~v~~L~~~ea~~L 160 (919)
..-.+++-++|+|+++...+ ..++...+....+++.+|++|.+ ..+.+. .....++++.++++++..+.
T Consensus 85 -------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 85 -------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred -------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 00114677888898876643 55555555444577777765544 444443 34456899999999999988
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHH
Q 002458 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (919)
Q Consensus 161 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 197 (919)
+.... .++ +.+..++..++|.=-|+..+.
T Consensus 158 l~~~~-----~~~---~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 158 LLSKN-----KEK---EYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred HHHcC-----CCh---hHHHHHHHHcCCHHHHHHHHh
Confidence 77541 111 335556666777445655543
No 335
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.24 Score=54.80 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=80.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
|=-.++|++|.|||++..|+++.+. |+ ++.-...++. .-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~---~n~d-Lr~LL~~-----------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVK---LDSD-LRHLLLA-----------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeecccc---CcHH-HHHHHHh-----------------------C
Confidence 4456899999999999999999763 22 3332222221 1111 2333322 1
Q ss_pred CCcEEEEEeCCCCHHH--------------------HHHHhcCCC--CCCC-CcEEEE-EeCChhhH-----hhhCCCce
Q 002458 96 RKRVLVILDDVDQLEQ--------------------LQALVGNHD--WFGF-GSRIII-TSRDEHVL-----KSHGVTNT 146 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~~--------------------l~~l~~~~~--~~~~-gsrIIi-TTR~~~~~-----~~~~~~~~ 146 (919)
..|-+||+.|+|-.-+ +.-|+...+ |-.. +-|||| ||-.++-+ ..-..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 2344556666643311 122222221 3333 346665 77654333 22245667
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHh-hccCC
Q 002458 147 YKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS-FLCGR 203 (919)
Q Consensus 147 ~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~-~L~~~ 203 (919)
+.+.-=+.+.-..||+++..... +. .+..+|.+...|.-+.=..++. ++..+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 78888888999999998874432 22 3445555545554333333333 44444
No 336
>PRK00625 shikimate kinase; Provisional
Probab=95.26 E-value=0.014 Score=57.38 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.|.|+||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999874
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.25 E-value=0.033 Score=55.07 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=60.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEech--hhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR--EVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
.+++|.|..|.|||||++.+..... ...+.+++.... ...+... ...-+...-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHH
Confidence 5899999999999999999887543 234455543210 0000000 11111222344556
Q ss_pred HcCCcEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 94 LCRKRVLVILDDVDQ------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 94 L~~kk~LlVlDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
+..++-++++|.... ...+..+...... ..+..||++|-+....... .+.++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 667778889997522 1222223222211 1236688888887655433 23455444
No 338
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.075 Score=59.21 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred ChHHHHhHhcC-------CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHh
Q 002458 1 MEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (919)
Q Consensus 1 l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~ 73 (919)
++||.++|..- ..=.+=|.++|++|.|||-|||+++-...- -+|...-.++. +++
T Consensus 316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~sGSEFd--------------Em~ 377 (752)
T KOG0734|consen 316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYASGSEFD--------------EMF 377 (752)
T ss_pred HHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEeccccchh--------------hhh
Confidence 36677777642 122567889999999999999999875422 22222111110 000
Q ss_pred cccCccccchhhhHHHHHH----HHcCCcEEEEEeCCCCHH-------------HHHHHhcCCCCCCC--CcEEEEEeCC
Q 002458 74 MERDLIIWDVHKGINLIRW----RLCRKRVLVILDDVDQLE-------------QLQALVGNHDWFGF--GSRIIITSRD 134 (919)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~~----~L~~kk~LlVlDdv~~~~-------------~l~~l~~~~~~~~~--gsrIIiTTR~ 134 (919)
+..+...+++ .-++-++.|.+|.+|... .+..++...+-|.+ |.-||-.|.-
T Consensus 378 ---------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 378 ---------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred ---------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 0112222222 224568999999885542 25666666665554 4444434544
Q ss_pred hhhHhh-----hCCCceEEcCCCCHHHHHHHHHHHhcC
Q 002458 135 EHVLKS-----HGVTNTYKVRGLDYVEALQLFHLKVSN 167 (919)
Q Consensus 135 ~~~~~~-----~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 167 (919)
++.+.. -..+..+.|+.-+..-..++|..|..+
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 433332 234567778877777777777777643
No 339
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.23 E-value=0.026 Score=60.88 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=35.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 67 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ 67 (919)
.|+|...|.|||||||+|.+.+-........+.-++ ....+++.++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence 589999999999999999998877766655555554 3445555554443
No 340
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.26 Score=57.58 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=66.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
..=|.+||++|.|||-+|++|+...+ --|++. .|. ++.+....+ . .+...+.+.+.-
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs-----L~FlSV-------KGP-ELLNMYVGq----S------E~NVR~VFerAR 761 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS-----LNFLSV-------KGP-ELLNMYVGQ----S------EENVREVFERAR 761 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce-----eeEEee-------cCH-HHHHHHhcc----h------HHHHHHHHHHhh
Confidence 33577999999999999999998764 234441 111 222322222 1 112233444445
Q ss_pred cCCcEEEEEeCCCCHH---------------HHHHHhcCCCC----CCCCcEEEEEeCChhh-----HhhhCCCceEEcC
Q 002458 95 CRKRVLVILDDVDQLE---------------QLQALVGNHDW----FGFGSRIIITSRDEHV-----LKSHGVTNTYKVR 150 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~---------------~l~~l~~~~~~----~~~gsrIIiTTR~~~~-----~~~~~~~~~~~v~ 150 (919)
..+++.|.||.+|... .+..++.+++- ...+.=||=.|..+.+ +..-..++.+.|+
T Consensus 762 ~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 762 SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEec
Confidence 5689999999886652 12233333322 2234445545544433 3333456677777
Q ss_pred CCCHHHHH
Q 002458 151 GLDYVEAL 158 (919)
Q Consensus 151 ~L~~~ea~ 158 (919)
.=+++|+.
T Consensus 842 ~~~d~esk 849 (953)
T KOG0736|consen 842 PNEDAESK 849 (953)
T ss_pred CCccHHHH
Confidence 66655554
No 341
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.054 Score=53.52 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=64.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCcc----------ccchhh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI----------IWDVHK 85 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~----------~~~~~~ 85 (919)
.+++|.|..|.|||||++.++.... ...+.+++.... .... . ......+ .-+.+..... ...-+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~~-~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKKE-P-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-cccc-h-HhhhccE-EEEecCCccccCCcHHHHhhcCHHHH
Confidence 5899999999999999999987543 234555553211 1000 0 0000000 0000000000 011111
Q ss_pred hHHHHHHHHcCCcEEEEEeCCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEc
Q 002458 86 GINLIRWRLCRKRVLVILDDVDQ------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (919)
Q Consensus 86 ~~~~i~~~L~~kk~LlVlDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v 149 (919)
..-.+.+.+..++-++++|+... ...+..+..... ..|..||++|.+....... .++++.+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 22245566777888999997522 223333333322 2367899999988765533 3445544
No 342
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.20 E-value=0.02 Score=58.41 Aligned_cols=29 Identities=41% Similarity=0.586 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
+...+|+|.|++|+||||||+.++..+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44589999999999999999999987653
No 343
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.20 E-value=0.07 Score=57.88 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=34.3
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHH--h----CCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL--K----DQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~----~~f~~~~~~~ 50 (919)
+.+-.+|..+-..-+++-|+|.+|+|||+++..++-.. . ..=..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 34556666555566889999999999999998776422 1 1224678886
No 344
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.1 Score=53.07 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC--CCCeeEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFL 49 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~ 49 (919)
.+++|+|..|.|||||++.+...... ...+.+++
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 58999999999999999999886541 23444444
No 345
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.19 E-value=0.11 Score=67.02 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
-.|=|.++|++|.|||.||++++....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998653
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.18 E-value=0.11 Score=56.93 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh--CCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 50 (919)
-++|.++|+.||||||-..+++.++. ..-..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 69999999999999987766666554 4445566665
No 347
>PRK06217 hypothetical protein; Validated
Probab=95.15 E-value=0.078 Score=52.92 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.|+|.|.+|.||||+|+++.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999763
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.12 E-value=0.013 Score=52.79 Aligned_cols=25 Identities=52% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
|-|+|.+|+|||++|+.++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999999876544
No 349
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.07 E-value=0.18 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYN 37 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~ 37 (919)
+++|+|..|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 350
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.03 E-value=0.12 Score=64.07 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=98.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh-CCC---CeeEEEE--echhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK-DQF---EASSFLA--NVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~-~~f---~~~~~~~--~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
-+.|+|-+|.||||....++-... +++ +..+|+. ..........-..+..-+... ..... ...+.....
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~-~~~~~----~~~~~~~~~ 298 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEE-LFSQG----IAKQLIEAH 298 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHH-HhccC----CcchhhHHH
Confidence 578999999999999998886442 222 2223332 111111000000112222221 11111 111122222
Q ss_pred HHHHcCCcEEEEEeCCCCHHH---------HHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcCCCCHHHHHHHH
Q 002458 91 RWRLCRKRVLVILDDVDQLEQ---------LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYVEALQLF 161 (919)
Q Consensus 91 ~~~L~~kk~LlVlDdv~~~~~---------l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~~L~~~ea~~Lf 161 (919)
.+.+...++++.+|++|.... +..+.+. -+.+.+|+|+|....-........+++..+.++.-.+..
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 578889999999999877653 3333333 248999999997644333333345566665554444222
Q ss_pred H--------HHhcCCCCCC--hhHHHH---HHHHHHHhCCchhHHHHHHhhcc------CCCHHHHHHHHHHHhcCC
Q 002458 162 H--------LKVSNGKQPT--DYRVEL---SKYVVNYAGGLPLAIEVLGSFLC------GRSVEEWKSALNRLQEAP 219 (919)
Q Consensus 162 ~--------~~a~~~~~~~--~~~~~~---~~~i~~~~~GlPLal~~l~~~L~------~~~~~~w~~~l~~l~~~~ 219 (919)
. ...++..... .....+ ..+.++.....|++|.+.+..-. ....+-++.+++.+-...
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~ 451 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGRE 451 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhcc
Confidence 2 2222221111 011111 12334444778999888874433 134566777776654433
No 351
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.99 E-value=0.027 Score=58.48 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=27.5
Q ss_pred CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 12 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
.....+|||.|+.|.|||||++.+...++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999999776543
No 352
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.98 E-value=0.02 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
++++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999875
No 353
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.98 E-value=0.08 Score=65.96 Aligned_cols=35 Identities=34% Similarity=0.338 Sum_probs=26.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
..++.++|+.|+|||++|+.+...+...-...+.+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 35688999999999999999999765443333433
No 354
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.97 E-value=0.019 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
...|.|+|++|+||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999874
No 355
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.065 Score=55.38 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHHHHHHcCCcEEEEEeC----CCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhh
Q 002458 88 NLIRWRLCRKRVLVILDD----VDQ--LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSH 141 (919)
Q Consensus 88 ~~i~~~L~~kk~LlVlDd----v~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~ 141 (919)
..+.+.|.+++=|++||. ||- ...+-.+...+. ..|.-|+++|-|-+....+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 356788999999999995 333 334555555543 3389999999997665543
No 356
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.97 E-value=0.036 Score=60.27 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=55.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccC-ChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
.-..|+|.|..|.||||+++++...+... ...+.+.+..+..... .... + ...........-...+.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~----l----~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVH----L----FYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEE----E----EecCCCCCcCccCHHHHHHH
Confidence 44689999999999999999999876543 2345555544432211 0000 0 00000000111223456677
Q ss_pred HHcCCcEEEEEeCCCCHHHHHHHh
Q 002458 93 RLCRKRVLVILDDVDQLEQLQALV 116 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~l~~l~ 116 (919)
.|+...=.+|+|.+...+.++.+.
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIR 237 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHH
Confidence 788888889999999877665443
No 357
>PRK06547 hypothetical protein; Provisional
Probab=94.97 E-value=0.025 Score=55.67 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
....+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999874
No 358
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.071 Score=52.69 Aligned_cols=23 Identities=52% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999999984
No 359
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.92 E-value=0.2 Score=49.11 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHcC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~~ 96 (919)
++.|.|.+|.|||++|.++... ....++++.. ....+ .++++.+... ...+... +...+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d-~em~~rI~~H-~~~R~~~-w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFD-DEMAERIARH-RKRRPAH-WRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCC-HHHHHHHHHH-HHhCCCC-ceEeecHHHHHHHHHh
Confidence 3679999999999999998765 2346677752 22222 2344444443 2222222 3333444445555532
Q ss_pred --CcEEEEEeCC
Q 002458 97 --KRVLVILDDV 106 (919)
Q Consensus 97 --kk~LlVlDdv 106 (919)
+.-.|++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337889975
No 360
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.91 E-value=0.11 Score=52.92 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 87 INLIRWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
.-.|.+.|...+-+|+.|.- .+.+.+-.+..... ...|..||+.|-|..++..+ +.++.++
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 34577888899999999953 33444444444331 13488999999999988753 4555554
No 361
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.91 E-value=0.093 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
-.+++|.|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 362
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.90 E-value=0.065 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 363
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.89 E-value=0.061 Score=56.97 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
..|.|.|.+|+||||+|+.+...+...=..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46889999999999999999997765323344443
No 364
>PRK13947 shikimate kinase; Provisional
Probab=94.88 E-value=0.02 Score=56.46 Aligned_cols=26 Identities=38% Similarity=0.380 Sum_probs=22.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999987543
No 365
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.87 E-value=0.11 Score=64.50 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=55.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
..+.++|+.|+|||+||+++++.+-..-...+.+ +..+....+.+.. +.+... .....++ ...+.+.++
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~--------l~g~~~-gyvg~~~-~~~l~~~~~ 608 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK--------LIGSPP-GYVGYNE-GGQLTEAVR 608 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH--------hcCCCC-cccCcCc-cchHHHHHH
Confidence 4567899999999999999999774432333333 2222222222211 111111 1111111 123445555
Q ss_pred CCc-EEEEEeCCCCHH--HHHHHhcCCCCC-----------CCCcEEEEEeCC
Q 002458 96 RKR-VLVILDDVDQLE--QLQALVGNHDWF-----------GFGSRIIITSRD 134 (919)
Q Consensus 96 ~kk-~LlVlDdv~~~~--~l~~l~~~~~~~-----------~~gsrIIiTTR~ 134 (919)
.++ -+|+||+++... .++.+...+... -..+.||+||..
T Consensus 609 ~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 609 KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 444 588899996553 244444433211 134567777774
No 366
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.14 Score=55.68 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=30.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
-.+|.|=|-+|||||||..+++.++..+- .+.|+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 36899999999999999999999988776 777775
No 367
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.86 E-value=0.17 Score=57.16 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..+|.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999988764
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.85 E-value=0.2 Score=53.47 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=28.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC-CCeeEEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 50 (919)
-.++.|.|.+|+||||+|..++.....+ -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4688899999999999999998766444 45677775
No 369
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.85 E-value=0.098 Score=57.23 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=33.6
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHH--HhC----CCCeeEEEE
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKD----QFEASSFLA 50 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~----~f~~~~~~~ 50 (919)
.+-.+|..+-..-+++-|+|.+|+|||+|+..++-. +.. .-..++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 455556555555688889999999999999888642 211 124678886
No 370
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.84 E-value=0.026 Score=68.75 Aligned_cols=180 Identities=21% Similarity=0.154 Sum_probs=87.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH-HhCCCCeeEEEEe--------chhhhccCChHHHHHHHHHHHhcccCccccchhh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLAN--------VREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~~--------~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~ 85 (919)
.++++|.|+.|.||||+.+.+.-. +..+- .+++.. .......-+..+-..+-++. ...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt-----------fS~ 388 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQS--GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST-----------FSG 388 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHh--CCCccCCccccccchhheeeecChHhHHhhhhhH-----------HHH
Confidence 478999999999999999998764 21110 111110 00011010111111111111 111
Q ss_pred hHHHHHHHHc--CCcEEEEEeCCCCH---HH---H-HHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCce---EEcCCCC
Q 002458 86 GINLIRWRLC--RKRVLVILDDVDQL---EQ---L-QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNT---YKVRGLD 153 (919)
Q Consensus 86 ~~~~i~~~L~--~kk~LlVlDdv~~~---~~---l-~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~---~~v~~L~ 153 (919)
....+...+. ..+-|+++|..... .+ + .++...+. ..|+.+|+||-+..+......... +.+. ++
T Consensus 389 ~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d 465 (771)
T TIGR01069 389 HMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FD 465 (771)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec
Confidence 2222333333 47899999987332 22 2 22222221 358899999999876443211111 1111 11
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHHHHhc
Q 002458 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQE 217 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~~ 217 (919)
. +... |..+. ....+.. ..+-+|++++ |+|-.+.--|..+.+....++...++++.+
T Consensus 466 ~-~~l~-p~Ykl-~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 466 E-ETLS-PTYKL-LKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred C-CCCc-eEEEE-CCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 1111 11111 1112222 2356677766 899888888887766555566666665543
No 371
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=0.081 Score=61.31 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
++-+|..++|++|+||||||..++++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc
Confidence 456899999999999999999999874
No 372
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.066 Score=53.66 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCHHHHHHH------hcCCCCCCCCcEEEEEeCChhhHhhhCCCceE
Q 002458 87 INLIRWRLCRKRVLVILDDVDQLEQLQAL------VGNHDWFGFGSRIIITSRDEHVLKSHGVTNTY 147 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv~~~~~l~~l------~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~ 147 (919)
...+.+.+--++-+.|||..|+--+++++ ...+. .+|+-++|.|-.++++.....+.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34455555567889999977665444333 22222 4588888888888888876655544
No 373
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.84 E-value=0.14 Score=52.14 Aligned_cols=57 Identities=16% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHcCCcEEEEEeCCCC------HH-HHHHHhcCCCCCCC-CcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 90 IRWRLCRKRVLVILDDVDQ------LE-QLQALVGNHDWFGF-GSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 90 i~~~L~~kk~LlVlDdv~~------~~-~l~~l~~~~~~~~~-gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
+.+.+..+.-++++|+... .+ .+..+..... .. |..||++|.+...... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~--~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK--SQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH--hccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 4556677888999998632 23 3333333221 22 6678888888876543 45666654
No 374
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.34 Score=48.90 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHH
Q 002458 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (919)
Q Consensus 11 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i 90 (919)
+-+-.|=|.++|++|.|||.||++|++.-...| +..+.. . ..+..+ ++ +..++
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs-------e-fvqkyl----ge----------gprmv 237 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS-------E-FVQKYL----GE----------GPRMV 237 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH-------H-HHHHHh----cc----------CcHHH
Confidence 345578889999999999999999999754433 332211 1 111222 11 11222
Q ss_pred HHH----HcCCcEEEEEeCCCCHH------------H----HHHHhcCCCCC--CCCcEEEEEeCC-----hhhHhhhCC
Q 002458 91 RWR----LCRKRVLVILDDVDQLE------------Q----LQALVGNHDWF--GFGSRIIITSRD-----EHVLKSHGV 143 (919)
Q Consensus 91 ~~~----L~~kk~LlVlDdv~~~~------------~----l~~l~~~~~~~--~~gsrIIiTTR~-----~~~~~~~~~ 143 (919)
++. -.+-+-.|.+|.++... + +-.++...+-| +...+||+.|.. +.++..-..
T Consensus 238 rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrl 317 (408)
T KOG0727|consen 238 RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRL 317 (408)
T ss_pred HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccc
Confidence 221 13456788888875442 1 23333333333 345688876653 333333345
Q ss_pred CceEEcCCCCHHHHHHHHHHHhc
Q 002458 144 TNTYKVRGLDYVEALQLFHLKVS 166 (919)
Q Consensus 144 ~~~~~v~~L~~~ea~~Lf~~~a~ 166 (919)
+..++.+--+..+-.-.|.....
T Consensus 318 drkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 318 DRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred cccccCCCCchhhhhhhHHhhhh
Confidence 66778876566666666655543
No 375
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.086 Score=60.17 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=24.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
-++|+|+|.+|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999998866443
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.75 E-value=0.064 Score=57.32 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccc-c
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII-W 81 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~-~ 81 (919)
++.++|...-..-+.|.|.|..|.||||+++++...+...-..++-+.+..|...... ....... .
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~-------------~~~~~~~~~ 181 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP-------------NQIQIQTRR 181 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS-------------SEEEEEEET
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc-------------ceEEEEeec
Confidence 4455555443345789999999999999999999877665244455554443321110 0000011 1
Q ss_pred chhhhHHHHHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEE-EEEeC
Q 002458 82 DVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRI-IITSR 133 (919)
Q Consensus 82 ~~~~~~~~i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrI-IiTTR 133 (919)
+.......++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|.-
T Consensus 182 ~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 182 DEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp TTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred CcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 3344566778888888888999999888887774433 347777 55544
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.75 E-value=0.042 Score=54.42 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
-.+|+|.|++|+||||+|++++..+...-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999999875432234444
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.73 E-value=0.035 Score=55.15 Aligned_cols=26 Identities=50% Similarity=0.703 Sum_probs=23.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999987643
No 379
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.72 E-value=0.033 Score=60.61 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
...++++++|++|+||||||+++.+.+.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999998764
No 380
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.71 E-value=0.027 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=23.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
++|.+.|++|+||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58999999999999999999987643
No 381
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.0015 Score=66.44 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=35.4
Q ss_pred ceEEeeCCCCCCCCCCCCCCCcEEEEccCCCCccccccccCCCCCcEEecCCCCCCCc--CCCCCCCCccceeeccCcc
Q 002458 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR--TPDFTGVPNLERLNLEGCT 457 (919)
Q Consensus 381 ~~L~~~~~~~~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~l~~L~~L~L~~~~ 457 (919)
+.|+.-++.++.+.-.-.++.|++|.|+-|+|++|- .+..+++|+.|.|..|.+... +..+.++|+|+.|.|..|.
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 334444444444433334555566666666655552 244555555555555533211 1113444444444444443
No 382
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.69 E-value=0.094 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.-|.|+|..|+||+.+|+.+.+.
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 34669999999999999999983
No 383
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.17 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999998743
No 384
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.69 E-value=0.16 Score=55.47 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC------CCeeEEEE
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 50 (919)
.+..+|..+-..-+++-|+|.+|+||||+|..++...... =..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445555444556889999999999999999998754321 12678886
No 385
>PTZ00035 Rad51 protein; Provisional
Probab=94.64 E-value=0.17 Score=55.48 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=34.4
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhC------CCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 50 (919)
+.+-.+|..+-..-.++.|+|.+|+||||++..++-..+- .=..++|++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 3455666655566789999999999999999988754321 123456776
No 386
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.63 E-value=0.23 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|.|.|++|+||||+|+.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 387
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.027 Score=55.81 Aligned_cols=26 Identities=46% Similarity=0.507 Sum_probs=24.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 388
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.58 E-value=0.049 Score=55.14 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
....+|+|.|++|+||||+|+.+...+...-...++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34579999999999999999999997754433455653
No 389
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.57 E-value=0.15 Score=51.36 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh-CCCCeeEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFL 49 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 49 (919)
-.+++|.|..|.|||||.+.++.... ....+.+++
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 35899999999999999999987541 233444444
No 390
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.56 E-value=0.14 Score=56.59 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=62.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE-EechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL-ANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L 94 (919)
.+|.|.|+.|.||||+.+++...+.......++. .+-.+...... ..+ ....+.. .+.......++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~-----~~~----i~q~evg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK-----RSL----INQREVG-LDTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc-----cce----EEccccC-CCCcCHHHHHHHhh
Confidence 6899999999999999999998876555444443 32212110000 000 0011111 11123456678888
Q ss_pred cCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 002458 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRD 134 (919)
Q Consensus 95 ~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~ 134 (919)
+..+=.|++|.+.+.+......... ..|-.|+.|.-.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 8899999999998888766533321 235555555543
No 391
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.032 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.++|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999888766
No 392
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.0098 Score=36.29 Aligned_cols=20 Identities=60% Similarity=0.881 Sum_probs=11.2
Q ss_pred CCCeeeCCCCCCccCcHhhh
Q 002458 614 SLEAIDLSGNNFFSLPSSIN 633 (919)
Q Consensus 614 ~L~~L~Ls~n~l~~lp~~l~ 633 (919)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666655443
No 393
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.51 E-value=0.14 Score=55.08 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccC----ccccchhhhHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKGIN 88 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~----~~~~~~~~~~~ 88 (919)
+.-|+|-|+|..|+||||||..+....+..-..++|++.-. .+. ...++.+.-..+ ..+...++...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~------~ld---~~~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEH------ALD---PEYAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS------------HHHHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcc------cch---hhHHHhcCccccceEEecCCcHHHHHH
Confidence 34579999999999999999999887766666788887211 111 122222111111 11233445555
Q ss_pred HHHHHHcC-CcEEEEEeCCCCHHH
Q 002458 89 LIRWRLCR-KRVLVILDDVDQLEQ 111 (919)
Q Consensus 89 ~i~~~L~~-kk~LlVlDdv~~~~~ 111 (919)
.+...++. .--+||+|.|....-
T Consensus 122 ~~e~lirsg~~~lVVvDSv~al~p 145 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAALVP 145 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT-B-
T ss_pred HHHHHhhcccccEEEEecCcccCC
Confidence 55555554 346889999865543
No 394
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.50 E-value=0.1 Score=54.17 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCcEEEEEeCC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhC
Q 002458 87 INLIRWRLCRKRVLVILDDV------DQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv------~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~ 142 (919)
...|.+.|.++.=+++||.- .+..++-.+...+. ...|..||+++-|-..+..+.
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhC
Confidence 45677888888888899963 33333222222221 134788999999988776654
No 395
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.50 E-value=0.085 Score=57.49 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+++.|+.|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998775
No 396
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.50 E-value=0.086 Score=54.26 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=28.7
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
+.+.+........+|||.|++|+||+||..++...++.+
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 333344444567899999999999999999999877654
No 397
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.50 E-value=0.2 Score=58.22 Aligned_cols=57 Identities=25% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHcCCcEEEEEe------CCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcCC
Q 002458 89 LIRWRLCRKRVLVILD------DVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRG 151 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlD------dv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~~ 151 (919)
.+...+..+.=++||| |++..+.++..+..+ ...||+.|-|+....... .+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-----EGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 3455566788899999 456666677666654 345888899998887654 55777764
No 398
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.49 E-value=0.08 Score=58.52 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=59.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
..+=+-|||..|.|||.|...+|+.+..+-..++.+. .-+.++.+.+-.. . .....+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~~-~--------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQL-R--------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHHH-h--------CCCccHHHHHHH
Confidence 4677889999999999999999997643211111111 0122222222222 1 112335566677
Q ss_pred HcCCcEEEEEeCC-----CCHHHHHHHhcCCCCCCCCcEEEEEeC
Q 002458 94 LCRKRVLVILDDV-----DQLEQLQALVGNHDWFGFGSRIIITSR 133 (919)
Q Consensus 94 L~~kk~LlVlDdv-----~~~~~l~~l~~~~~~~~~gsrIIiTTR 133 (919)
+.++..||.||.+ .+..-+..+...+ +..|..+|.||-
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gvvlVaTSN 166 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGVVLVATSN 166 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCCEEEecCC
Confidence 7788889999964 3334466665544 245776666665
No 399
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.49 E-value=0.04 Score=59.65 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=27.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
|++.+.|.||+||||+|.+++-....+=..+.-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 68999999999999999998887655544445443
No 400
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.48 E-value=0.13 Score=47.72 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCcccccc-ccCCCCCcEEecCCCCCCCcCC--CCCCCCccceeecc
Q 002458 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLE 454 (919)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~ 454 (919)
+|+.+.+.. .++.++.. +..+++|+.+.+.++ ...++ .|.++++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 555555553 34555432 455555666665553 22222 25555555555554
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.47 E-value=0.055 Score=54.35 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=26.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEech
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR 53 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 53 (919)
.|+|.|-||+||||+|..++.++..+-...+.+.|..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999997776644432344444433
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.45 E-value=0.11 Score=56.38 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
...+|+++|++|+||||++..++..++.+-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999998776543333333
No 403
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.44 E-value=0.25 Score=51.80 Aligned_cols=24 Identities=54% Similarity=0.775 Sum_probs=21.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|+|..|+|||||++.++..+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998744
No 404
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.44 E-value=0.18 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.|.|.|++|+||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998763
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.43 E-value=0.24 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
++++|.|+.|.||||+.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999863
No 406
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.58 Score=54.37 Aligned_cols=148 Identities=21% Similarity=0.222 Sum_probs=85.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHH-HHHHHHc
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN-LIRWRLC 95 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~-~i~~~L~ 95 (919)
=|.++|++|+|||-||.+++....- -|+.. + |. +++.+..+. .++.++ .+.+...
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~-----~fisv------K-GP-----ElL~KyIGa-------SEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNL-----RFISV------K-GP-----ELLSKYIGA-------SEQNVRDLFERAQS 758 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCe-----eEEEe------c-CH-----HHHHHHhcc-------cHHHHHHHHHHhhc
Confidence 4779999999999999999886432 23431 1 21 233332222 123333 3444455
Q ss_pred CCcEEEEEeCCCCHH-------------HHHHHhcCCCC--CCCCcEEEE-EeCCh----hhHhhhCCCceEEcCCCCHH
Q 002458 96 RKRVLVILDDVDQLE-------------QLQALVGNHDW--FGFGSRIII-TSRDE----HVLKSHGVTNTYKVRGLDYV 155 (919)
Q Consensus 96 ~kk~LlVlDdv~~~~-------------~l~~l~~~~~~--~~~gsrIIi-TTR~~----~~~~~~~~~~~~~v~~L~~~ 155 (919)
-+++.+.+|.+|... .+..++..++- .-.|.-|+- |||.. .++..-..++.+.-+.-++.
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 799999999886552 24555554431 123555664 66643 33333345666666777888
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCchh
Q 002458 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL 191 (919)
Q Consensus 156 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 191 (919)
|.++.|...+..-..++. -..+.++.+..|.--
T Consensus 839 eRl~il~~ls~s~~~~~~---vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDTD---VDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHHHHhhccCCccc---cchHHHhhhcCCCch
Confidence 889988877643222221 224556666666643
No 407
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.2 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|.|..|.|||||++.++...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999998643
No 408
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.42 E-value=0.11 Score=60.37 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=39.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+++.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566777766666789999999999999999999887665666777775
No 409
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.39 E-value=0.15 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~ 39 (919)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998865
No 410
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.35 E-value=0.038 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
..-|.|+|..|+||+++|+.++..-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999998854
No 411
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.35 E-value=0.045 Score=58.70 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=23.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
|+|+|+|-||+||||+|..++..+..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 579999999999999999998866544
No 412
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.34 E-value=0.27 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
-.+++|.|..|.|||||++.++..
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 413
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.33 E-value=0.3 Score=54.88 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
..++|.++|..|+||||+|..++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999988765543334444
No 414
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.1 Score=60.25 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=28.4
Q ss_pred CCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCC
Q 002458 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (919)
Q Consensus 12 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 44 (919)
+-+-++++.+|++|||||.+|+.++..+-..|-
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 345689999999999999999999998876663
No 415
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.69 Score=46.97 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=80.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
-.+=|..||++|.|||-+|++.+.+-...| +. -.+.. +.+.++ .++...+++.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-----LK-------LAgPQ-LVQMfI--------------GdGAkLVRDA 256 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATF-----LK-------LAGPQ-LVQMFI--------------GDGAKLVRDA 256 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchH-----HH-------hcchH-HHhhhh--------------cchHHHHHHH
Confidence 356688999999999999999987644332 11 00111 111111 1123333333
Q ss_pred H----cCCcEEEEEeCCCCHH--------------H--HHHHhcCCCCCCC--CcEEEEEeCC-----hhhHhhhCCCce
Q 002458 94 L----CRKRVLVILDDVDQLE--------------Q--LQALVGNHDWFGF--GSRIIITSRD-----EHVLKSHGVTNT 146 (919)
Q Consensus 94 L----~~kk~LlVlDdv~~~~--------------~--l~~l~~~~~~~~~--gsrIIiTTR~-----~~~~~~~~~~~~ 146 (919)
. ...+..|.+|.++... | .-.++..++-|.+ ..+||-.|.. +.++..-..+..
T Consensus 257 FaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRK 336 (424)
T KOG0652|consen 257 FALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRK 336 (424)
T ss_pred HHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhccccccc
Confidence 2 1356788888764331 1 3344555554544 4566765553 444555566778
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCC-CCChhHHHHHHH
Q 002458 147 YKVRGLDYVEALQLFHLKVSNGK-QPTDYRVELSKY 181 (919)
Q Consensus 147 ~~v~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~ 181 (919)
++.+--+++...+++.-+..+-+ .++-.++++++.
T Consensus 337 IEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred ccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 88887777777777777765433 445567766653
No 416
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.32 E-value=0.39 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+..|+|++|+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987653
No 417
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.31 E-value=0.36 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
-.+++|.|..|.|||||++.++...
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3589999999999999999998743
No 418
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.23 Score=49.69 Aligned_cols=109 Identities=18% Similarity=0.130 Sum_probs=59.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC---CC--eeEEEEechhhhccCChHHHHHHHHHHHhcccCcccc-chhhhHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ---FE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW-DVHKGINL 89 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---f~--~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~-~~~~~~~~ 89 (919)
--..|.|++|+||||+.+.++.-++.. |- .++-++...+... .....-|.++... .+.. .-.+...+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R------~dVld~cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRR------MDVLDPCPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhh------hhhcccchHHHHH
Confidence 335689999999999999999866543 32 2333332222111 1000011111111 0111 11122223
Q ss_pred HHHHHcCCcEEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 002458 90 IRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRD 134 (919)
Q Consensus 90 i~~~L~~kk~LlVlDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~ 134 (919)
+.-.-...+=.+|.|.+...++-.++.... ..|.++|.|.--
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 333334467789999999998877777664 468888877653
No 419
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.48 Score=51.64 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=35.4
Q ss_pred CceEEcCCCCHHHHHHHHHHHhcCC----CCCChhHHHHHHHHHHHhCCchhHHHHHHhhc
Q 002458 144 TNTYKVRGLDYVEALQLFHLKVSNG----KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (919)
Q Consensus 144 ~~~~~v~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 200 (919)
..+++|+..+.+|+..+...+...+ ..+. ++.-+++.-..+|+|--++.++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 3478999999999998876665321 1222 2344666667799996666666554
No 420
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.29 E-value=0.14 Score=56.21 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=34.1
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHh--C----CCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~----~f~~~~~~~ 50 (919)
+.+..+|..+-..-.++-|+|.+|+|||++|..++-... . .-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 345556665555678899999999999999987775321 1 112578886
No 421
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.28 E-value=0.19 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.+++|.|..|.|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 422
>PRK13949 shikimate kinase; Provisional
Probab=94.27 E-value=0.035 Score=54.53 Aligned_cols=24 Identities=46% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
-|.|+|+.|+||||+|+.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999874
No 423
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.26 E-value=0.17 Score=49.31 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHcCCcEEEEEeC----CCCHHHHH--HHhcCCCCCCCCcEEEEEeCChhhHhhhC
Q 002458 88 NLIRWRLCRKRVLVILDD----VDQLEQLQ--ALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (919)
Q Consensus 88 ~~i~~~L~~kk~LlVlDd----v~~~~~l~--~l~~~~~~~~~gsrIIiTTR~~~~~~~~~ 142 (919)
..|.+.+-+++-+++-|. +|..-.|+ .+..... ..|..|+++|-|.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 456777788999999994 45544433 3333332 56999999999999887764
No 424
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.26 E-value=0.031 Score=57.49 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=22.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
No 425
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.26 E-value=0.29 Score=53.32 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=26.8
Q ss_pred CCCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 12 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
.....+|+|.|.+|+||||++..+...++.+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3567899999999999999999998877654
No 426
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.26 E-value=0.17 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|.|..|.|||||++.++...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 589999999999999999998753
No 427
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.25 E-value=0.11 Score=50.05 Aligned_cols=88 Identities=31% Similarity=0.277 Sum_probs=46.2
Q ss_pred EEcCCcchHHHHHHHHHHHHhCCCCeeEEEEe---chhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHcC
Q 002458 20 ICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (919)
Q Consensus 20 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~~ 96 (919)
|.|++|+||||+|+.++.++. | ..++. +++...... .+.+++ .+.+... ..-..+-....+++++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s--~~g~~i-~~~l~~g--~~vp~~~v~~ll~~~l~~ 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDS--ELGKQI-QEYLDNG--ELVPDELVIELLKERLEQ 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTS--HHHHHH-HHHHHTT--SS--HHHHHHHHHHHHHS
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhh--HHHHHH-HHHHHhh--ccchHHHHHHHHHHHHhh
Confidence 689999999999999999862 2 33431 111111111 111121 2212111 111233445666666653
Q ss_pred C--cEEEEEeCC-CCHHHHHHHhc
Q 002458 97 K--RVLVILDDV-DQLEQLQALVG 117 (919)
Q Consensus 97 k--k~LlVlDdv-~~~~~l~~l~~ 117 (919)
. ..-+|||++ .+.+|.+.+..
T Consensus 71 ~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 71 PPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hcccceeeeeeccccHHHHHHHHH
Confidence 3 455789998 55566665544
No 428
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.25 E-value=0.03 Score=55.72 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999976
No 429
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.24 E-value=0.12 Score=47.92 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=47.0
Q ss_pred ccCCCCCcEEecCCCCCCCcCC-CCCCCCccceeeccCccccccccccccCccccceecccccccccccCccccCCCCCc
Q 002458 419 IKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (919)
Q Consensus 419 ~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~~~~~lp~~i~~l~~L~ 497 (919)
+..+.+|+.+.+..+ ...... .|.++++|+.+.+.++ ....-...+.++++|+.+.+.+ .....-...+..+++|+
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566677777777643 222222 2777777777777663 2222223456666677777754 22222223444566777
Q ss_pred EEEecCcCCCCcCcccccCCCCCcEeecCCCcccccCc-cccCCCCC
Q 002458 498 ILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNL 543 (919)
Q Consensus 498 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L 543 (919)
.+.+..+ ....-...+.++ +|+.+.+.. .++.++. .+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7776542 221222334454 666666654 3333332 33444444
No 430
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.24 E-value=0.03 Score=52.93 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=22.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
+|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998765443
No 431
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.23 E-value=0.032 Score=56.55 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=21.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+|||.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 432
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.22 E-value=0.083 Score=51.63 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
....+++|+|..|+|||||++.+...+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 356799999999999999999999877653
No 433
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.22 E-value=0.13 Score=55.60 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=56.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCC--CCeeEEEEechhhhccC-ChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~-~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
+.|.|.|..|.||||+++++.+.+... -+.++-+.+..+..... .... +. ... ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~---------~~-~~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ---------LR-TSD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE---------EE-ecC---CCCCHHHHHHH
Confidence 467799999999999999999988653 23455555544432111 0000 00 000 11144567788
Q ss_pred HHcCCcEEEEEeCCCCHHHHHHHh
Q 002458 93 RLCRKRVLVILDDVDQLEQLQALV 116 (919)
Q Consensus 93 ~L~~kk~LlVlDdv~~~~~l~~l~ 116 (919)
.|+..+=-||+..+.+.+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 888888888999999887766543
No 434
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.21 E-value=0.25 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
-.+++|.|..|.|||||++.++...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3689999999999999999998754
No 435
>PRK13946 shikimate kinase; Provisional
Probab=94.20 E-value=0.034 Score=55.54 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=23.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+.|++.|+.|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999874
No 436
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.26 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|.|..|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999998754
No 437
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.19 E-value=0.27 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.+++|.|..|.|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999864
No 438
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.17 E-value=0.33 Score=48.42 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
...+|+|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999997753
No 439
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.15 E-value=0.16 Score=60.89 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
..|+|+|..|.|||||++.+...+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 579999999999999999997643
No 440
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.13 E-value=0.07 Score=50.48 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=26.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHh-CCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 50 (919)
++|+|+|..|+|||||++.+.+.+. ..+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999876 4444444444
No 441
>PRK14526 adenylate kinase; Provisional
Probab=94.13 E-value=0.22 Score=50.71 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=46.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE--e-chh-hhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA--N-VRE-VSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~--~-~~~-~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
|+|.|++|+||||+|+.++..+.- . .++ + +++ +..........++++.. .. ....+.....+.++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~--~---~is~G~llr~~~~~~t~~g~~i~~~~~~----g~--lvpd~~~~~lv~~~ 71 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNY--Y---HISTGDLFRENILNSTPLGKEIKQIVEN----GQ--LVPDSITIKIVEDK 71 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--c---eeecChHHHHhcccCChhhHHHHHHHHc----Cc--cCChHHHHHHHHHH
Confidence 679999999999999999876531 1 121 1 111 11111112222232221 11 11222334666666
Q ss_pred HcC--CcEEEEEeCC-CCHHHHHHHhc
Q 002458 94 LCR--KRVLVILDDV-DQLEQLQALVG 117 (919)
Q Consensus 94 L~~--kk~LlVlDdv-~~~~~l~~l~~ 117 (919)
+.. .+--+|||++ .+.+|.+.+..
T Consensus 72 l~~~~~~~g~ilDGfPR~~~Qa~~l~~ 98 (211)
T PRK14526 72 INTIKNNDNFILDGFPRNINQAKALDK 98 (211)
T ss_pred HhcccccCcEEEECCCCCHHHHHHHHH
Confidence 653 1234677999 67777777654
No 442
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.12 E-value=0.037 Score=52.87 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHh
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
+|.|.|+.|+||||+|+++..++.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 443
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.12 E-value=0.91 Score=52.87 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHhHhcC--C-CCeEEEEEEcCCcchHHHHHHHHHHHHh--------CCCCeeEEEEechhhhccCChHHHHHHHHHH
Q 002458 3 KMNGYLEAG--L-DDVRFIGICGMGGIGKTTLAKVLYNTLK--------DQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (919)
Q Consensus 3 ~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~ 71 (919)
+|+.++... + ..-..+-|.|.+|.|||..+..|.+.++ ..|+ .+.+...+ -....++...+...
T Consensus 407 ~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~----l~~~~~~Y~~I~~~ 481 (767)
T KOG1514|consen 407 EIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLR----LASPREIYEKIWEA 481 (767)
T ss_pred HHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEccee----ecCHHHHHHHHHHh
Confidence 455555432 2 2345899999999999999999998553 2233 23333221 23466677777777
Q ss_pred HhcccCccccchhhhHHHHHHHHc-----CCcEEEEEeCCCCHHH--HHHHhcCCCCC-CCCcEEEEEeCCh------hh
Q 002458 72 VLMERDLIIWDVHKGINLIRWRLC-----RKRVLVILDDVDQLEQ--LQALVGNHDWF-GFGSRIIITSRDE------HV 137 (919)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~~~L~-----~kk~LlVlDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR~~------~~ 137 (919)
+-++.. .+..+...+..+.. .+..+|++|++|..-. -+-+..-++|- .++||++|.+=.. +.
T Consensus 482 lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 482 LSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred cccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 444332 34455555555554 3568889999865532 12222223443 4788877755321 11
Q ss_pred H-----hhhCCCceEEcCCCCHHHHHHHHHHHhcC
Q 002458 138 L-----KSHGVTNTYKVRGLDYVEALQLFHLKVSN 167 (919)
Q Consensus 138 ~-----~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~ 167 (919)
+ ...+ -..+..++-+.++-.+....+..+
T Consensus 558 l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 558 LMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred hccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcc
Confidence 1 1112 125566677777777776665533
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.10 E-value=0.039 Score=54.85 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 445
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.09 E-value=0.29 Score=48.70 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=25.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.+++|.|..|.|||||++.++..... ..+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~ 60 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLD 60 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 58999999999999999999875432 23444443
No 446
>PRK13948 shikimate kinase; Provisional
Probab=94.09 E-value=0.037 Score=54.89 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
..+.|.++||.|+||||+++.+.+++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457789999999999999999999874
No 447
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.08 E-value=0.3 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~ 39 (919)
|+|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999886
No 448
>PRK14528 adenylate kinase; Provisional
Probab=94.08 E-value=0.26 Score=49.26 Aligned_cols=24 Identities=42% Similarity=0.474 Sum_probs=21.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+.|.|.|++|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 449
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.07 E-value=0.044 Score=54.74 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=30.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
.|+|.|+|+.|+|||||++++......+|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 47899999999999999999999998888655444
No 450
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.042 Score=53.13 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCC
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 43 (919)
+-|.++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999876554
No 451
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.06 E-value=0.084 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=39.6
Q ss_pred HHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 4 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
+-+++..+-+.-+++.|+|.+|+|||++|.++..+.....+.++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45566655577799999999999999999999988777788899986
No 452
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.05 E-value=0.042 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHHh
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
|.|+|++|.||||+|+.+...+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998773
No 453
>PRK13768 GTPase; Provisional
Probab=94.04 E-value=0.07 Score=56.24 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=26.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
.+++|.|+||+||||++..+...++.+-..++.+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 6889999999999999999988775543334443
No 454
>PRK14531 adenylate kinase; Provisional
Probab=94.03 E-value=0.29 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+.|.|.|++|.||||+|+.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999986
No 455
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.00 E-value=0.51 Score=48.10 Aligned_cols=24 Identities=46% Similarity=0.660 Sum_probs=21.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.+++|.|..|.|||||++.++...
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999998643
No 456
>PRK14529 adenylate kinase; Provisional
Probab=93.98 E-value=0.24 Score=50.72 Aligned_cols=89 Identities=20% Similarity=0.155 Sum_probs=48.4
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCC-CeeEEEEechh-hhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHHHc
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVRE-VSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~-~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~L~ 95 (919)
|.|.|++|+||||+|+.++.++.-.+ ...-.+ ++ +.....+....++++.. ......+-....+++++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~------G~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR------GDLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc------cCcchHHHHHHHHHHHHh
Confidence 77899999999999999999874322 111111 11 11111222223333322 122233345566777775
Q ss_pred CC-cEEEEEeCC-CCHHHHHHH
Q 002458 96 RK-RVLVILDDV-DQLEQLQAL 115 (919)
Q Consensus 96 ~k-k~LlVlDdv-~~~~~l~~l 115 (919)
+. +-=+|||++ .+.+|.+.+
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHHHH
Confidence 42 345899998 555555444
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.97 E-value=0.26 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYN 37 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~ 37 (919)
.|++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 458
>PRK01184 hypothetical protein; Provisional
Probab=93.96 E-value=0.18 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=18.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
.+|+|+|++|+||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 4443
No 459
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.89 E-value=0.22 Score=54.26 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred hHHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHh--C----CCCeeEEEE
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLA 50 (919)
Q Consensus 2 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~----~f~~~~~~~ 50 (919)
+.+..+|..+-..-.++.|+|.+|+||||+|..++.... . .-..++|++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 345566665555678999999999999999998876321 1 113568876
No 460
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.88 E-value=0.072 Score=57.23 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
++|+|+|-||+||||+|..++..+..+=..+.-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 6789999999999999999988775443334444
No 461
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.87 E-value=0.18 Score=60.63 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=26.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
..++|+|..|.|||||++.+...+ . .++.+.++
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~ 409 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKIN 409 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEEC
Confidence 578999999999999999998765 2 35555554
No 462
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.85 E-value=0.16 Score=57.47 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=51.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc---cccch---h-----
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---IIWDV---H----- 84 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~---~~~~~---~----- 84 (919)
+-++|.|.+|+|||||+..+......+...++-+.-+.+. ...+.++.++++..-...... ...+. .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999988765443333333333221 223444555554421111110 00111 0
Q ss_pred hhHHHHHHHH---cCCcEEEEEeCCCCHH
Q 002458 85 KGINLIRWRL---CRKRVLVILDDVDQLE 110 (919)
Q Consensus 85 ~~~~~i~~~L---~~kk~LlVlDdv~~~~ 110 (919)
...-.+.+.+ +++.+|+++|++-...
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 1112244444 6789999999985443
No 463
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.85 E-value=0.046 Score=58.15 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+-|.++|+.|+|||++++......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 567899999999999999988754
No 464
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.84 E-value=0.069 Score=54.74 Aligned_cols=26 Identities=46% Similarity=0.694 Sum_probs=22.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
|+|+|.|.||+||||++..++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57899999999999999998887654
No 465
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.83 E-value=0.23 Score=51.75 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
+|+|.|-.|+||||+|+++.+.++..-..+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI 33 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV 33 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 589999999999999999999776543334444
No 466
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.81 E-value=0.066 Score=60.00 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
-+-.||+|.+|.||||+.++++.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcC
Confidence 367899999999999999999974
No 467
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.81 E-value=0.047 Score=53.83 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.+.|+|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998764
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.049 Score=51.39 Aligned_cols=25 Identities=44% Similarity=0.545 Sum_probs=22.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
+|.|-|.+|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999998753
No 469
>PRK13975 thymidylate kinase; Provisional
Probab=93.79 E-value=0.055 Score=54.66 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=23.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998864
No 470
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.78 E-value=0.18 Score=58.61 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=39.6
Q ss_pred HHHHHHcCCcEEEEEeC------CCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcCC
Q 002458 89 LIRWRLCRKRVLVILDD------VDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRG 151 (919)
Q Consensus 89 ~i~~~L~~kk~LlVlDd------v~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~~ 151 (919)
.+.+.|-.++=+++||. ++....++.++... +| -+||+|-|+..+.... +.+++++.
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~-t~I~~ld~ 225 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVA-THILELDR 225 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHh-hheEEecC
Confidence 34556667788999994 45556677776654 36 8999999999888653 34665553
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.77 E-value=0.05 Score=66.54 Aligned_cols=187 Identities=20% Similarity=0.176 Sum_probs=87.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH-HhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCc--cccchhhhHHHH
Q 002458 14 DVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--IIWDVHKGINLI 90 (919)
Q Consensus 14 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~--~~~~~~~~~~~i 90 (919)
+.+++.|.|+.+.||||+.+.+.-. +-.+ ..++++.-.. + -..+..+++..+....+. ...........+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq--~G~~vpa~~~-~----~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~ 398 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAK--SGLPIPANEP-S----EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNI 398 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHH--hCCCcccCCC-c----cccccceEEEecCCccchhhchhHHHHHHHHH
Confidence 4688999999999999999988642 1111 1112211000 0 000000111110000000 001111222233
Q ss_pred HHHHc--CCcEEEEEeCCCCH---HH---H-HHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCc---eEEcCCCCHHHHH
Q 002458 91 RWRLC--RKRVLVILDDVDQL---EQ---L-QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTN---TYKVRGLDYVEAL 158 (919)
Q Consensus 91 ~~~L~--~kk~LlVlDdv~~~---~~---l-~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~---~~~v~~L~~~ea~ 158 (919)
...+. ..+-|+++|..... .. + ..+...+. ..|+.+|+||-+.++........ .+.+. ++ .+..
T Consensus 399 ~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d-~~~l 474 (782)
T PRK00409 399 VRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FD-EETL 474 (782)
T ss_pred HHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee-cCcC
Confidence 33333 47789999987322 21 1 22222221 24789999999987765432211 11121 11 1111
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHhCCchhHHHHHHhhccCCCHHHHHHHHHHHhc
Q 002458 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQE 217 (919)
Q Consensus 159 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~~ 217 (919)
. +. |-+....+.. ..+-+|++.+ |+|-.+.--|..+.+....++...++++.+
T Consensus 475 ~-~~-Ykl~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 475 R-PT-YRLLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred c-EE-EEEeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 11 1111112222 2356677766 899888888887766555566666665543
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.75 E-value=0.066 Score=53.93 Aligned_cols=25 Identities=44% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
.++.|.|.+|+||||++..++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999988664
No 473
>PLN02459 probable adenylate kinase
Probab=93.74 E-value=0.31 Score=50.87 Aligned_cols=89 Identities=25% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEe---chh-hhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHHH
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VRE-VSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~-~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 93 (919)
|.|.|++|+||||+|+.+.+.+. | .+++. +++ +.....+....+.++.+ ......+-....++++
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~--~---~~is~gdllR~ei~~~t~lg~~i~~~~~~------G~lVPdeiv~~ll~~~ 100 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG--V---PHIATGDLVREEIKSSGPLGAQLKEIVNQ------GKLVPDEIIFSLLSKR 100 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C---cEEeCcHHHHHHHhccchhHHHHHHHHHc------CCccCHHHHHHHHHHH
Confidence 66789999999999999998763 2 22321 111 11111122222222222 1122334456677777
Q ss_pred HcC----CcEEEEEeCC-CCHHHHHHHhc
Q 002458 94 LCR----KRVLVILDDV-DQLEQLQALVG 117 (919)
Q Consensus 94 L~~----kk~LlVlDdv-~~~~~l~~l~~ 117 (919)
+.. .+--+|||++ .+..|.+.|..
T Consensus 101 l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 101 LEAGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred HhcccccCCceEEEeCCCCCHHHHHHHHh
Confidence 753 3456899998 56666666643
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.73 E-value=0.81 Score=44.54 Aligned_cols=62 Identities=24% Similarity=0.370 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCcEEEEEeCCCC----HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceEEcC
Q 002458 87 INLIRWRLCRKRVLVILDDVDQ----LEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVR 150 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv~~----~~~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~~v~ 150 (919)
...+.+++.++ =+.|||.-+. ..|++-+..-..-...|+.|||.|-.+-+....+ ..+|++.
T Consensus 137 ~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~-A~I~~~~ 202 (233)
T COG3910 137 LAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPG-AEIYEIS 202 (233)
T ss_pred HHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCC-cEEEEEe
Confidence 45556666554 4667897533 3455444332222246899999999986655433 4466655
No 475
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.028 Score=34.28 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=11.1
Q ss_pred CcEeecCCCcccccCcccc
Q 002458 520 LEELDVGGTAIRQIPPSIV 538 (919)
Q Consensus 520 L~~L~L~~n~i~~lp~~l~ 538 (919)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666655544
No 476
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.68 E-value=0.27 Score=57.77 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.-|.|+|..|+|||++|+.+++..
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999998743
No 477
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.68 E-value=0.065 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
-.+|.+.|.-|.||||+++.+++.+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999999753
No 478
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.68 E-value=0.12 Score=53.91 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=35.6
Q ss_pred HHHHhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 3 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
++...+........+|||.|.+|+||+||..++-.++..+=..+.-+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 44455555667788999999999999999999998876654444433
No 479
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.67 E-value=0.41 Score=51.11 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
.+++|+|..|.|||||++.++..+. -.+.+++.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~ 63 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQID 63 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEEC
Confidence 4899999999999999999987654 34555554
No 480
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.66 E-value=0.24 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHh
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 40 (919)
...+.++|+.|+|||++|++++..+.
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999874
No 481
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.66 E-value=0.081 Score=46.11 Aligned_cols=25 Identities=48% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
++.+.|.+|+||||+|..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.60 E-value=0.082 Score=51.05 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=23.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhCC
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~~ 42 (919)
||+|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999988655
No 483
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.05 Score=52.06 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.8
Q ss_pred EEEEEcCCcchHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLY 36 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~ 36 (919)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 484
>PF13245 AAA_19: Part of AAA domain
Probab=93.58 E-value=0.14 Score=42.70 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=17.8
Q ss_pred EEEEEEcCCcchHHHHH-HHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLA-KVLYNTL 39 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA-~~v~~~~ 39 (919)
+++.|.|.+|.|||+++ ..+.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999554 5555544
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.53 E-value=0.057 Score=52.87 Aligned_cols=24 Identities=50% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhC
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
|.|.|..|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 486
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.52 E-value=0.13 Score=54.58 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEE
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 48 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 48 (919)
.++.+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 568999999999999999999999998776544443
No 487
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.52 E-value=0.11 Score=47.41 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=25.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHHhCCCCeeEEE
Q 002458 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (919)
Q Consensus 18 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 49 (919)
|.+.|.||+||||+|..++..+..+-..+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78999999999999999999876543334434
No 488
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.51 E-value=0.093 Score=55.65 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEE
Q 002458 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 50 (919)
++|+|+|.+|+|||||+..+...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 6899999999999999999999988876 566654
No 489
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.51 E-value=0.2 Score=46.82 Aligned_cols=34 Identities=26% Similarity=0.104 Sum_probs=25.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHHhC--CCCeeEEEE
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLA 50 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~ 50 (919)
.+.|.|..|.|||+.+..+...... .....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4679999999999999988875543 345555554
No 490
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.50 E-value=0.055 Score=55.16 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.3
Q ss_pred HhcCCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 002458 8 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (919)
Q Consensus 8 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 38 (919)
+-.+....++|+|.|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334456789999999999999999999754
No 491
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.41 Score=55.22 Aligned_cols=150 Identities=17% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 92 (919)
...+-+..+|++|+|||-+|++|+++.. ..+|..+..+ +++...++. .......+.+
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe-------------li~k~~gEt------e~~LR~~f~~ 272 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE-------------LISKFPGET------ESNLRKAFAE 272 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH-------------HHHhcccch------HHHHHHHHHH
Confidence 4568889999999999999999999875 3344433222 222222211 1122334445
Q ss_pred HHcCC-cEEEEEeCCCCHH------------HHHHHhcCCCCCCCCcEEE--EEeCChhhHhh----hCCCceEEcCCCC
Q 002458 93 RLCRK-RVLVILDDVDQLE------------QLQALVGNHDWFGFGSRII--ITSRDEHVLKS----HGVTNTYKVRGLD 153 (919)
Q Consensus 93 ~L~~k-k~LlVlDdv~~~~------------~l~~l~~~~~~~~~gsrII--iTTR~~~~~~~----~~~~~~~~v~~L~ 153 (919)
..+.+ +-.+.+|+++..- -...+..-.++.++.+++| -|||.+.-+.. -..+.-+++.-.+
T Consensus 273 a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 273 ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPG 352 (693)
T ss_pred HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCC
Confidence 55666 7888888764332 1222333333444444443 36665432221 1345677888888
Q ss_pred HHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHhCCc
Q 002458 154 YVEALQLFHLKVSNGKQP-TDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 154 ~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 189 (919)
..+-.++++...-+-+.. +.+. ..++..+.|.
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l----~~iA~~thGy 385 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDL----EDIAVSTHGY 385 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhH----HHHHHHccch
Confidence 888888888777544433 2333 4455555554
No 492
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.50 E-value=0.15 Score=56.91 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYN 37 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~ 37 (919)
-.++|+|+.|.|||||||.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3789999999999999999964
No 493
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.50 E-value=0.084 Score=60.83 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=28.2
Q ss_pred HhHhcCCCCeEEEEEEcCCcchHHHHHHHHHHHH
Q 002458 6 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 6 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
+++....+++.+|||.|..|.||||+|+.+...+
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4444455678999999999999999999998865
No 494
>PRK15453 phosphoribulokinase; Provisional
Probab=93.49 E-value=0.11 Score=54.61 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
....+|+|.|-+|+||||+|+++.+.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999987654
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=1.5 Score=45.68 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=77.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHHhCCCCeeEEEEechhhhccCChHHHHHHHHHHHhcccCccccchhhhHHHHHH-H
Q 002458 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (919)
Q Consensus 15 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~l~~l~~~ll~~~~~~~~~~~~~~~~~~~~i~~-~ 93 (919)
-|-|.++|++|.||+-||++|+...- ..|++ +|.. ++...++.+ .+.++..+.+ .
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-----STFFS----vSSS----DLvSKWmGE-----------SEkLVknLFemA 221 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-----STFFS----VSSS----DLVSKWMGE-----------SEKLVKNLFEMA 221 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEE----eehH----HHHHHHhcc-----------HHHHHHHHHHHH
Confidence 57899999999999999999998653 23343 2221 122222221 1122222222 2
Q ss_pred HcCCcEEEEEeCCCCH---------HHH-----HHHhc--CCCCCCCCcEEEEEeCChhhHhhh---CCCceEEcCCCCH
Q 002458 94 LCRKRVLVILDDVDQL---------EQL-----QALVG--NHDWFGFGSRIIITSRDEHVLKSH---GVTNTYKVRGLDY 154 (919)
Q Consensus 94 L~~kk~LlVlDdv~~~---------~~l-----~~l~~--~~~~~~~gsrIIiTTR~~~~~~~~---~~~~~~~v~~L~~ 154 (919)
..+|+-+|.+|.+|.. +.- +-|.+ .......|.-|+=.|.-+=++... .....+-++--+.
T Consensus 222 Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcH
Confidence 3468889999988533 111 11111 111113455566667655444332 2334444555555
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHhCCc
Q 002458 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (919)
Q Consensus 155 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 189 (919)
.....+|.-+.... +..-.+...+++.++..|.
T Consensus 302 ~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 302 HARARMFKLHLGDT--PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred HHhhhhheeccCCC--ccccchhhHHHHHhhcCCC
Confidence 56667777777432 2222233345555566664
No 496
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.47 E-value=0.23 Score=53.93 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCcEEEEEeCCCCHH----------HHHHHhcCCCCCCCCcEEEEEeCChhhHhhhCCCceE
Q 002458 87 INLIRWRLCRKRVLVILDDVDQLE----------QLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTY 147 (919)
Q Consensus 87 ~~~i~~~L~~kk~LlVlDdv~~~~----------~l~~l~~~~~~~~~gsrIIiTTR~~~~~~~~~~~~~~ 147 (919)
-..+...+..+.-+++.|.+...- .+..+... .|+.+++.|+.+++.+....+..+
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe-----~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE-----AGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH-----hCCeEEEEecCHHHHhccCCceeE
Confidence 345667777887888889763321 13344432 478888888888888877666443
No 497
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.47 E-value=0.066 Score=54.22 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYN 37 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~ 37 (919)
-++||+|..|+||||||+.++-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999985
No 498
>PRK05439 pantothenate kinase; Provisional
Probab=93.45 E-value=0.1 Score=56.21 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHhC
Q 002458 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (919)
Q Consensus 13 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 41 (919)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999887653
No 499
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.43 E-value=0.076 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=20.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 002458 16 RFIGICGMGGIGKTTLAKVLYN 37 (919)
Q Consensus 16 ~vv~I~G~gGiGKTtLA~~v~~ 37 (919)
++++|.|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 500
>PRK14530 adenylate kinase; Provisional
Probab=93.42 E-value=0.059 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEEEcCCcchHHHHHHHHHHHH
Q 002458 17 FIGICGMGGIGKTTLAKVLYNTL 39 (919)
Q Consensus 17 vv~I~G~gGiGKTtLA~~v~~~~ 39 (919)
.|+|.|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
Done!