Query 002458
Match_columns 919
No_of_seqs 542 out of 5466
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 17:02:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002458.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1178-1181//hhsearch_pdb/002458hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 338.7 21.0 293 2-306 138-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 319.2 21.2 291 2-305 134-452 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 293.9 17.9 389 334-737 152-558 (768)
4 1vt4_I APAF-1 related killer D 1.0 1 1 293.3 16.5 269 2-298 138-436 (1221)
5 3rgz_A Protein brassinosteroid 1.0 1 1 288.2 15.9 402 332-739 222-702 (768)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 282.6 20.4 316 2-331 134-497 (591)
7 4eco_A Uncharacterized protein 1.0 1 1 272.3 15.1 228 393-647 198-468 (636)
8 4ecn_A Leucine-rich repeat pro 1.0 1 1 271.1 19.8 220 332-554 322-632 (876)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 263.0 24.4 318 333-652 33-416 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 261.7 25.7 389 331-733 79-512 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=338.67 Aligned_cols=293 Identities=15% Similarity=0.113 Sum_probs=230.2
Q ss_pred HHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHHH----HHHCCCCEEEEEEECHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 5778957059-99829999992795139999999999----982789805998843123302795999999999783356
Q 002458 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (919)
Q Consensus 2 ~~l~~lL~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~ 76 (919)
++|.++|..+ ..++++|+|+|||||||||||+++|+ ++..+|++++|+. +++.+. .++..++.+++.++....
T Consensus 138 ~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il~~l~~~~ 215 (549)
T 2a5y_B 138 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDILLMLKSED 215 (549)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCC-CCHHHHHHHHHHHHHCCC
T ss_conf 999998725157896289998699998899999999840698746699579999-789878-799999999999985375
Q ss_pred C-CCCC-----CHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHC-CCCEEE
Q ss_conf 8-6324-----4132399999997599-199999089997989998439888899939999918845676509-784698
Q 002458 77 D-LIIW-----DVHKGINLIRWRLCRK-RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG-VTNTYK 148 (919)
Q Consensus 77 ~-~~~~-----~~~~~~~~i~~~l~~~-k~LiVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~-~~~~~~ 148 (919)
+ .... +.......+++.++++ |+||||||||+.+++ .+.. .+||+||||||++.++...+ ...+|+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~ 289 (549)
T 2a5y_B 216 DLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIE 289 (549)
T ss_dssp CCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCCCCEEEE
T ss_conf 5345555331469999999999976898489999799971441-5432-----699889997497799997088973898
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH-HHHCCCCHHHHHHH
Q ss_conf 18999799999999873189999926999999999992992469999972306889789999998-87349983599899
Q 002458 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN-RLQEAPNEKVLKVL 227 (919)
Q Consensus 149 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~-~l~~~~~~~i~~~l 227 (919)
+++|+.+||++||.++||.... .....+.+++|+++|+|+|||++++|+.++.+.. +|...+. .+...+...+..++
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l 367 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECIT 367 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCS
T ss_pred CCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9998989999999987448998-5568999999999959983999999998443448-9998757876136477789897
Q ss_pred HHHHCCCCHHHHHHHH-----------HHCCCCCCCCHHHHHHHHHHC--CCCCH-----------HHHHHHHHCCCEEE
Q ss_conf 8613058724577764-----------310344788989999987526--99804-----------63999851577088
Q 002458 228 RISYDGLDRRDKEIFL-----------DIACFFKGKDEDRVRKKLDSC--GFNSD-----------IGIRELLDKSLITI 283 (919)
Q Consensus 228 ~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~ll~~~--g~~~~-----------~~i~~L~~~sLi~~ 283 (919)
+.||+.|++..|.||+ ++|+||+++..+ +.+|.+. |+... ..+..|+++||++.
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS 445 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSE
T ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 516202267999997526522336743235608997666--533110135500267789999999999999987588367
Q ss_pred E----CCEEEEHHHHHHHHHHHHHCCC
Q ss_conf 6----8989612999999676443137
Q 002458 284 V----NNKLWMHDLLQEMGWEIVREHH 306 (919)
Q Consensus 284 ~----~~~~~mH~li~e~~~~iv~~~~ 306 (919)
. ..++.|||++|+|+++++.+++
T Consensus 446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=319.19 Aligned_cols=291 Identities=23% Similarity=0.295 Sum_probs=227.4
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH---HHCCCCEEE-EEEECHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5778957059998299999927951399999999999---827898059-988431233027959999999997833568
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEASS-FLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (919)
Q Consensus 2 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~l~~l~~~ll~~~~~~~~ 77 (919)
++|.++|....+++++|+|+|||||||||||+++|++ ....|...+ |+. +.+.. ...+......++..+.....
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~l~~~~~ 211 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLLMKLQNLCMRLDQEES 211 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEE-ECCCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 99999986135887779999189888889999986075678862788179999-78857-26799999999998655303
Q ss_pred ---CCCCCHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH-HCCCCEEECCC
Q ss_conf ---63244132399999997599--1999990899979899984398888999399999188456765-09784698189
Q 002458 78 ---LIIWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVRG 151 (919)
Q Consensus 78 ---~~~~~~~~~~~~i~~~l~~~--k~LiVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~~~~~-~~~~~~~~l~~ 151 (919)
....+.+.....+++.+.++ |+||||||||+.++++.+ ++|++||||||++.++.. .+....++++.
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~ 284 (1249)
T 3sfz_A 212 FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVES 284 (1249)
T ss_dssp TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCCCCEEEEECC
T ss_conf 3347887778999999999735678789999567997788763-------689789999277899876348843798258
Q ss_pred -CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC----------
Q ss_conf -997999999998731899999269999999999929924699999723068897899999988734998----------
Q 002458 152 -LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPN---------- 220 (919)
Q Consensus 152 -L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~l~~~~~---------- 220 (919)
|+++||++||.+.++... +.+.+.+++|+++|+|+|||++++|+.|+.+. ..|+..++++.....
T Consensus 285 ~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~ 360 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD 360 (1249)
T ss_dssp SCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred CCCHHHHHHHHHHHHCCCH---HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8887889999998657981---34838899999984997799999999862480-5799999998650443034655644
Q ss_pred -HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEE-CC---EEEEHHH
Q ss_conf -35998998613058724577764310344788--98999998752699804639998515770886-89---8961299
Q 002458 221 -EKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-NN---KLWMHDL 293 (919)
Q Consensus 221 -~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~ll~~~g~~~~~~i~~L~~~sLi~~~-~~---~~~mH~l 293 (919)
..+..+++.||+.|++++|.||+++|+||.++ ..+.+..+|+.++...+..++.|+++||++.. ++ .++||++
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l 440 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 440 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEECHH
T ss_conf 67799999989986799999999972813799751899999885898889999999997446338963798118996689
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999967644313
Q 002458 294 LQEMGWEIVREH 305 (919)
Q Consensus 294 i~e~~~~iv~~~ 305 (919)
+|+++++..+++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHHHHHHH
T ss_conf 999987450678
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=293.85 Aligned_cols=389 Identities=21% Similarity=0.225 Sum_probs=160.4
Q ss_pred CEEEEEEECCCCCCCCHHH---HCCCCCCCEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCC-CCCCCEEEECC
Q ss_conf 1999995279742139022---2399998599964812589842-16888454886079999899998-99993899946
Q 002458 334 AVEAIIVDVPEMTELEAKS---FSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLC 408 (919)
Q Consensus 334 ~i~~i~l~~~~~~~~~~~~---f~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~~~~~~~~~lp~~~-~~~~L~~L~L~ 408 (919)
.++.+.+..+......+.. +.++++|+.|++++|.+.+..+ ....+|+.|++.++.+...+..+ ...+|++|+++
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 99989897983588587155664358988989897880346578454786898989288278877111269999989794
Q ss_pred CCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCC
Q ss_conf 89972-13456447899868946998799868998898855443033744443234332275-45662034465566314
Q 002458 409 NSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTL-KRLILLNLKDCRNLVSF 486 (919)
Q Consensus 409 ~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l-~~L~~L~Ls~n~~l~~l 486 (919)
+|.+. .++..+..+++|+.|++++|......|.. .+++|++|++++|...+.+|..+..+ ++|+.|++++|...+..
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf 88587816577744888898989888665716724-36878989791785577258888844686889989689677842
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCC-CCCCCCCCCC-CCCEEEECCCCCCC--CCCCCC
Q ss_conf 865468899759983386789867612-248787767646788663-2492201889-99599927999999--987760
Q 002458 487 PKNVCLMKSLKILCLCGCLKLEKLPQD-LGEVECLEELDVGGTAIR-QIPPSIVQLV-NLKIFSLHGCKGQP--PKILSS 561 (919)
Q Consensus 487 p~~i~~l~~L~~L~Ls~~~~~~~~p~~-l~~l~~L~~L~L~~n~i~-~lp~~i~~l~-~L~~L~L~~~~~~~--~~~~~~ 561 (919)
|..+..+++|+.|++++|...+.+|.. +..+++|+.|++++|.++ .+|..+..++ +|+.|++++|.... +.....
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 36775587766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred HHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCC
Q ss_conf 111014458878898633488-87999987699327999988989853589988886528899884-3747666069996
Q 002458 562 NFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLK 639 (919)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 639 (919)
.....+..+....+......| .+..+++|+.|++++|. +.+.+|..++.+++|+.|++++|.++ .+|..+..+++|+
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCE
T ss_conf 324776189897784654248777568987989895884-6685467774499889898978815471897882877732
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99447676687588898765276205887642101000126999850575265540133333468899999997411899
Q 002458 640 ILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPN 719 (919)
Q Consensus 640 ~L~L~~n~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~c~~L~~l~l~~n~l~~~~~~~~~~~~~~ 719 (919)
.|++++|+..+.+|. .+.+|++|+.+++..| ......+..+.++++|+.+++++|++.+.+|. .+..
T Consensus 470 ~L~L~~N~l~~~~p~--------~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~ 536 (768)
T 3rgz_A 470 TLILDFNDLTGEIPS--------GLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPA----ELGD 536 (768)
T ss_dssp EEECCSSCCCSCCCG--------GGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCG----GGGG
T ss_pred EEEECCCCCCCCCCH--------HHHCCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH----HHCC
T ss_conf 999019951375887--------8816998998975399-51896876885689999898978943374887----7708
Q ss_pred CCCCEEEECCCC----CCCCCC
Q ss_conf 998618851799----989865
Q 002458 720 CSSQFHIFLPGN----EIPRWF 737 (919)
Q Consensus 720 ~~~~~~~~l~g~----~ip~wf 737 (919)
+..+..+.+.+| .+|.++
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEECCCCCCCCCCCHHH
T ss_conf 8989989898884688279578
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=293.30 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=203.4
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH--HHHCCCCE-EEEEEECHHHHCCCCHHHHHHHHHHHHHCCC--
Q ss_conf 577895705999829999992795139999999999--98278980-5998843123302795999999999783356--
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMER-- 76 (919)
Q Consensus 2 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~-- 76 (919)
++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++.......+...++..+....
T Consensus 138 eeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 138 LKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999997435-89718999769996679999999971498874899389998----289999999999999998622721
Q ss_pred ---CC-----CCCCHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHCCCC
Q ss_conf ---86-----3244132399999997---599199999089997989998439888899939999918845676509784
Q 002458 77 ---DL-----IIWDVHKGINLIRWRL---CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTN 145 (919)
Q Consensus 77 ---~~-----~~~~~~~~~~~i~~~l---~~~k~LiVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~ 145 (919)
.. .+.+.+.....+.+.+ .++|+||||||||+.++|+.+. +||+||||||++.++.......
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHHCCCCE
T ss_conf 022001346799999999999999998504788799871868189998647-------9829999443737998668970
Q ss_pred EEECC------CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHC
Q ss_conf 69818------99979999999987318999992699999999999299246999997230688--97899999988734
Q 002458 146 TYKVR------GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR--SVEEWKSALNRLQE 217 (919)
Q Consensus 146 ~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~--~~~~w~~~l~~l~~ 217 (919)
.|+++ +|+.+||++||+++.. ... .++..++ |+|+|||++++|+.|+++ ..++|+..
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~~-----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLD-CRP-----QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHC-CCT-----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCC-CCH-----HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC------
T ss_conf 899468655689699999999999749-988-----9999999---6989999999999984889979998669------
Q ss_pred CCCHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCC--HHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEE--CCEEEEH
Q ss_conf 998359989986130587245-777643103447889--8999998752699-804639998515770886--8989612
Q 002458 218 APNEKVLKVLRISYDGLDRRD-KEIFLDIACFFKGKD--EDRVRKKLDSCGF-NSDIGIRELLDKSLITIV--NNKLWMH 291 (919)
Q Consensus 218 ~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~--~~~l~~ll~~~g~-~~~~~i~~L~~~sLi~~~--~~~~~mH 291 (919)
....+..+++.||+.|++++ |.||+++|+||.+.. .+.+..+|++.|. .++..++.|+++||++.. ..+++||
T Consensus 351 -~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 351 -NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429 (1221)
T ss_dssp -SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCC
T ss_pred -CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEEH
T ss_conf -8618999999999848899999999997177999987799999876677889999999999961988986899989860
Q ss_pred HHHHHHH
Q ss_conf 9999996
Q 002458 292 DLLQEMG 298 (919)
Q Consensus 292 ~li~e~~ 298 (919)
++++++.
T Consensus 430 DLllELr 436 (1221)
T 1vt4_I 430 SIYLELK 436 (1221)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999985
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=288.16 Aligned_cols=402 Identities=20% Similarity=0.177 Sum_probs=245.2
Q ss_pred CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCC-CCCCCCEEEEECCCCC-CCCCCC-C-CCCCEEEEC
Q ss_conf 87199999527974213902223999985999648125898421-6888454886079999-899998-9-999389994
Q 002458 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFN-SLPVSF-R-PEKLFKLNL 407 (919)
Q Consensus 332 ~~~i~~i~l~~~~~~~~~~~~f~~~~~L~~L~l~~~~l~~~~~~-~~~~L~~L~~~~~~~~-~lp~~~-~-~~~L~~L~L 407 (919)
...++.+.+..+......+.+|.++++|+.|++++|.+.+..+. ...+|+.|.+.++.+. .+|..+ . ..+|++|++
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEEC
T ss_conf 99999897948858781657774488889898988866571672436878989791785577258888844686889989
Q ss_pred CCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCC-C-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEECCCCCCCC
Q ss_conf 689972-134564478998689469987998689-9-88988554430337444432343322754-5662034465566
Q 002458 408 CNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTP-D-FTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNL 483 (919)
Q Consensus 408 ~~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~-~L~~L~Ls~n~~l 483 (919)
++|.+. .+|..+..+++|+.|++++|......| . +..+++|++|++++|...+.+|..+..++ +|+.|++++|...
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCC
T ss_conf 68967784236775587766778978852573797887248888788484784376230989863227719986278747
Q ss_pred CCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 314865468--899759983386789867612248787767646788663-24922018899959992799999998776
Q 002458 484 VSFPKNVCL--MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKGQPPKILS 560 (919)
Q Consensus 484 ~~lp~~i~~--l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~ 560 (919)
+..|..+.. +++|+.|++++|...+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|......+..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 87676665332477618989778465424877756898798989588466854677744998898989788154718978
Q ss_pred CHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCC
Q ss_conf 0111014458878898633488-87999987699327999988989853589988886528899884-374766606999
Q 002458 561 SNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKL 638 (919)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 638 (919)
......+..+....+......| .+..+++|+.|++++|. +.+.+|..++.+++|+.|+|++|.++ .+|..+..+++|
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred HCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCC
T ss_conf 8287773299901995137588788169989989753995-189687688568999989897894337488777088989
Q ss_pred CEEECCCCCCCCCCCCCCCC---CCE------------------------------------------------------
Q ss_conf 69944767668758889876---527------------------------------------------------------
Q 002458 639 KILCLEKCRNLKSLPELPPE---IVF------------------------------------------------------ 661 (919)
Q Consensus 639 ~~L~L~~n~~l~~lp~lp~~---L~~------------------------------------------------------ 661 (919)
+.|++++|+..+.+|.-... +..
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEE
T ss_conf 98989888468827957860421223201345421111344432222332221001355632320023211001133100
Q ss_pred -----EECCCCCCCCEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC----C
Q ss_conf -----6205887642101000126999850575265540133333468899999997411899998618851799----9
Q 002458 662 -----VGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLPGN----E 732 (919)
Q Consensus 662 -----L~~~~c~~L~~l~~~~n~~~~~~~~~~~~~c~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~~~l~g~----~ 732 (919)
-.+.++++|+.++++.| ...+.++..+.++++|+.+++++|++.+.+|. .+.....+..+++.+| .
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEC
T ss_pred CCCCCHHHHCCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH----HHHCCCCCCEEECCCCCCCCC
T ss_conf 4627433403356657978588-01555877884141578784868803887896----784777899898978802386
Q ss_pred CCCCCCC
Q ss_conf 8986531
Q 002458 733 IPRWFRF 739 (919)
Q Consensus 733 ip~wf~~ 739 (919)
+|..|..
T Consensus 696 ip~~l~~ 702 (768)
T 3rgz_A 696 IPQAMSA 702 (768)
T ss_dssp CCGGGGG
T ss_pred CCHHHHC
T ss_conf 8867757
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=282.59 Aligned_cols=316 Identities=22% Similarity=0.275 Sum_probs=228.7
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HCCCC-EEEEEEECHHHHCCCCHHHHHHHHHHHHHCCC-
Q ss_conf 57789570599982999999279513999999999998---27898-05998843123302795999999999783356-
Q 002458 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMER- 76 (919)
Q Consensus 2 ~~l~~lL~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~~~- 76 (919)
++|.+++....++.++|+|+||||+||||||++++++. ...|+ .++|+.. ...... .+......+...+....
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~~~~-~~~~~l~~l~~~l~~~~~ 211 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQDKS-GLLMKLQNLCTRLDQDES 211 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESCCHH-HHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEEC-CCCCHH-HHHHHHHHHHHHHCCCCC
T ss_conf 999999860368884699976998988999999983556888528996599977-877668-899999999998503556
Q ss_pred --CCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHCCCCEEEC---
Q ss_conf --86324413239999999759--91999990899979899984398888999399999188456765097846981---
Q 002458 77 --DLIIWDVHKGINLIRWRLCR--KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV--- 149 (919)
Q Consensus 77 --~~~~~~~~~~~~~i~~~l~~--~k~LiVlDdv~~~~~l~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~l--- 149 (919)
.....+.+.....+.+.+.+ +++|||+||+|+..+++. +++|++||||||++.++.... ...|++
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l 283 (591)
T 1z6t_A 212 FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVE 283 (591)
T ss_dssp SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH-------HCCCCEEEEECCCCHHHHHCC-CCCEEEECC
T ss_conf 556799889999999999970679986999858998799987-------637986999898817777348-982686158
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC----------
Q ss_conf 8999799999999873189999926999999999992992469999972306889789999998873499----------
Q 002458 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAP---------- 219 (919)
Q Consensus 150 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~l~~~~---------- 219 (919)
++|+.+|+.+||...++.. .....+.+.+|+++|+|+|+|++++|+.++.+. ..|...++.+....
T Consensus 284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred CCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999899999999871898---310459999999995898379999999984484-359999999988689876511465
Q ss_pred -CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEE-C---CEEEEHH
Q ss_conf -835998998613058724577764310344788--98999998752699804639998515770886-8---9896129
Q 002458 220 -NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-N---NKLWMHD 292 (919)
Q Consensus 220 -~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~ll~~~g~~~~~~i~~L~~~sLi~~~-~---~~~~mH~ 292 (919)
...+..++..||+.|++..|.+|+++|+|+.+. +.+.+..+|+..+......+..|++++|+... + ..++||+
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~ 439 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD 439 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEECH
T ss_conf 43789999999998689999999997455679985089999999665889999999999859586885489856799768
Q ss_pred HHHHHHHHHHHCC------------C-------CCCCCCEEECCCCHHHHHHHHCCCC
Q ss_conf 9999967644313------------7-------8999972414573238999711759
Q 002458 293 LLQEMGWEIVREH------------H-------SDKPGKWSRLWLYKDVYHVLSKYMG 331 (919)
Q Consensus 293 li~e~~~~iv~~~------------~-------~~~p~~~~rl~~~~d~~~vl~~~~~ 331 (919)
++++++++....+ . ...++.+.++|..+.+.|++..+..
T Consensus 440 lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 440 LQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHCCCH
T ss_conf 9999998653568999999999999765377899887898775150389999966877
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=272.25 Aligned_cols=228 Identities=19% Similarity=0.222 Sum_probs=125.6
Q ss_pred CCCCC-CCCCCEEEECCCCCCCC------------------CCCCCC--CCCCCCEEECCCCCCCCCCCC-CCCCCCCCE
Q ss_conf 99998-99993899946899721------------------345644--789986894699879986899-889885544
Q 002458 393 LPVSF-RPEKLFKLNLCNSRIKY------------------LWKGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLER 450 (919)
Q Consensus 393 lp~~~-~~~~L~~L~L~~n~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~ 450 (919)
+|..+ .+.+|++|++++|.+.. +|..+. .+++|+.|++++|......|. +.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCE
T ss_conf 78777256478789886882366423221222221001024863220044687888980488577628388834999788
Q ss_pred EECCCCC-CCC-CCCCCCCCC------CCCCEECCCCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3033744-443-234332275------4566203446556631486--54688997599833867898676122487877
Q 002458 451 LNLEGCT-RLL-EVHQSVGTL------KRLILLNLKDCRNLVSFPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECL 520 (919)
Q Consensus 451 L~L~~~~-~l~-~~~~~i~~l------~~L~~L~Ls~n~~l~~lp~--~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L 520 (919)
|++++|. ..+ .+|..++.+ ++|+.|++++|... .+|. .+..+++|+.|++++|.+.+.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCC
T ss_conf 97847988766533578875430465788888989799377-66765554257888989690880705166-64788988
Q ss_pred CEEECCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEECCC
Q ss_conf 6764678866324922018899-95999279999999877601110144588788986334888799--99876993279
Q 002458 521 EELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTG--LSSLQTLDLSD 597 (919)
Q Consensus 521 ~~L~L~~n~i~~lp~~i~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--l~~L~~L~Ls~ 597 (919)
+.|++++|.++.+|..+..+++ |+.|++++|.... .+. .+.. +++|+.|++++
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~-----------------------~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN-----------------------IFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS-----------------------CCCTTCSSCEEEEECCS
T ss_pred CEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC-CCH-----------------------HHHHCCCCCCCEEECCC
T ss_conf 989898994030337565102368689852982754-466-----------------------55333457668897748
Q ss_pred CCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCHHH-HCCCCCCEEECCCCC
Q ss_conf 9998898985358-------9988886528899884374766-606999699447676
Q 002458 598 CNLLEGAIPSDIG-------SLFSLEAIDLSGNNFFSLPSSI-NQLLKLKILCLEKCR 647 (919)
Q Consensus 598 n~l~~~~~p~~l~-------~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~ 647 (919)
|. +.+.+|..+. .+++|+.|+|++|.++.+|..+ ..+++|+.|++++|+
T Consensus 412 N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 412 NE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred CC-CCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 85-7886524420022011258988889772796686787887158988989897997
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=271.05 Aligned_cols=220 Identities=15% Similarity=0.202 Sum_probs=155.4
Q ss_pred CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEE-CCCCCCCCCCCCCC--------------------------------
Q ss_conf 871999995279742139022239999859996-48125898421688--------------------------------
Q 002458 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEI-NNLYSSGNLEYLSN-------------------------------- 378 (919)
Q Consensus 332 ~~~i~~i~l~~~~~~~~~~~~f~~~~~L~~L~l-~~~~l~~~~~~~~~-------------------------------- 378 (919)
...|..+.|..+......+.+|.++++|+.|++ ++|.+++..+....
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99798998724789994855774155562843012563356664222344544115678887776666542037511156
Q ss_pred -----------------CCCEEEEECCCCCC-------CCCCC-CCCCCEEEECCCCCCCC------------------C
Q ss_conf -----------------84548860799998-------99998-99993899946899721------------------3
Q 002458 379 -----------------NLRYLKWHEYPFNS-------LPVSF-RPEKLFKLNLCNSRIKY------------------L 415 (919)
Q Consensus 379 -----------------~L~~L~~~~~~~~~-------lp~~~-~~~~L~~L~L~~n~i~~------------------l 415 (919)
....+......+.. +|..+ .+.+|+.|+|++|.+.. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78787765073324322235442312040566676152118875699987897968867887465322332222224458
Q ss_pred CCCCC--CCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCEECCCCCCCC
Q ss_conf 45644--789986894699879986899-8898855443033744-443-2343322754-------5662034465566
Q 002458 416 WKGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTLK-------RLILLNLKDCRNL 483 (919)
Q Consensus 416 ~~~~~--~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~-~l~-~~~~~i~~l~-------~L~~L~Ls~n~~l 483 (919)
|..+. .+++|+.|+|++|......|. +.++++|+.|++++|. +.+ .+|..++.++ +|+.|++++|...
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 74440255999778987189887527387737999899989689876566461778752330155688319982289477
Q ss_pred CCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCEEEECCCCCC
Q ss_conf 31486--546889975998338678986761224878776764678866324922018899-959992799999
Q 002458 484 VSFPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCKGQ 554 (919)
Q Consensus 484 ~~lp~--~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~i~~l~~-L~~L~L~~~~~~ 554 (919)
.+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.++.+|..+..+++ |+.|++++|...
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred -CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC
T ss_conf -6187235515898898989799825-621-2247985007987187125035877525114989998499787
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=262.95 Aligned_cols=318 Identities=20% Similarity=0.198 Sum_probs=216.7
Q ss_pred CCEEEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCC---CCCCCEEEEECCCCCCC-CCCC-CCCCCEEEEC
Q ss_conf 71999995279742139022239999859996481258984216---88845488607999989-9998-9999389994
Q 002458 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL---SNNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNL 407 (919)
Q Consensus 333 ~~i~~i~l~~~~~~~~~~~~f~~~~~L~~L~l~~~~l~~~~~~~---~~~L~~L~~~~~~~~~l-p~~~-~~~~L~~L~L 407 (919)
..++.+.+..+....+.+.+|.++++|+.|++++|.+....+.. ..+|+.|++.++.+..+ |..+ .+.+|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCC-CCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EECCCCCCCC
Q ss_conf 68997213-4564478998689469987998-689988988554430337444432343322754566--2034465566
Q 002458 408 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLI-RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI--LLNLKDCRNL 483 (919)
Q Consensus 408 ~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~~-~~~~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~Ls~n~~l 483 (919)
++|.+..+ +..+..+++|+.|++++|.... ..|.+.++++|+.|++++|......+..++.+++|+ .|++++|...
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred CCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 12676657810122378223898879834114765456876568777656844554965633221564038966798147
Q ss_pred CCCCCCCCCCC----------------------------------------------------CCCEEEECCCCCCCCCC
Q ss_conf 31486546889----------------------------------------------------97599833867898676
Q 002458 484 VSFPKNVCLMK----------------------------------------------------SLKILCLCGCLKLEKLP 511 (919)
Q Consensus 484 ~~lp~~i~~l~----------------------------------------------------~L~~L~Ls~~~~~~~~p 511 (919)
...|..+ ... +|+.|++++|...+..+
T Consensus 193 ~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp EECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CCCHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCH
T ss_conf 5486673-001001355677266777765133564422002011026412268667430320750599944576585577
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12248787767646788663249220188999599927999999987760111014--4588788986334888799998
Q 002458 512 QDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSL--LLPNKNSDSMCLSFPRFTGLSS 589 (919)
Q Consensus 512 ~~l~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~l~~l~~ 589 (919)
..+..+++|+.|++++|.++.+|..+..+++|+.|++++|......+........+ +....+..........+..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 77445667888956288267778214165468889771687686760233015768988898997444346245506675
Q ss_pred CCEEECCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 7699327999988989--85358998888652889988437-476660699969944767668758
Q 002458 590 LQTLDLSDCNLLEGAI--PSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSL 652 (919)
Q Consensus 590 L~~L~Ls~n~l~~~~~--p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~l 652 (919)
|+.|++++|.+. +.. +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|+.....
T Consensus 352 L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 352 LRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred CCEEECCCCCCC-CCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 898878899666-45675221056788898989899677578887347745776878888677756
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=261.66 Aligned_cols=389 Identities=17% Similarity=0.113 Sum_probs=193.0
Q ss_pred CCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCC---CCCCCCCEEEEECCCCCCC--CCCCCCCCCEEE
Q ss_conf 98719999952797421390222399998599964812589842---1688845488607999989--999899993899
Q 002458 331 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE---YLSNNLRYLKWHEYPFNSL--PVSFRPEKLFKL 405 (919)
Q Consensus 331 ~~~~i~~i~l~~~~~~~~~~~~f~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~~~~~~~~~l--p~~~~~~~L~~L 405 (919)
+...++.+.+..+....+.+.+|.++++|+.|++++|.+.+..+ ....+|+.|.+.++.+..+ |..+...+|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 84336764488985654586552344215376521267665781012237822389887983411476545687656877
Q ss_pred ECCCCCCCCCC-CCCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--------------------
Q ss_conf 94689972134-5644789986--894699879986899889885544303374444323--------------------
Q 002458 406 NLCNSRIKYLW-KGIKPLKELK--FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEV-------------------- 462 (919)
Q Consensus 406 ~L~~n~i~~l~-~~~~~l~~L~--~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~-------------------- 462 (919)
++++|.+..++ ..+..+++|+ .|++++|......|......+|+.|++++|......
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred ECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCC
T ss_conf 76568445549656332215640389667981475486673001001355677266777765133564422002011026
Q ss_pred ------CCCCCCCC--CCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-
Q ss_conf ------43322754--566203446556631486546889975998338678986761224878776764678866324-
Q 002458 463 ------HQSVGTLK--RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI- 533 (919)
Q Consensus 463 ------~~~i~~l~--~L~~L~Ls~n~~l~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l- 533 (919)
+..+..+. +|+.|++++|......+..+..+++|+.|++++|.. ..+|..+..+++|+.|++++|.++.+
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred CCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCC-CCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 4122686674303207505999445765855777744566788895628826-777821416546888977168768676
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCC-CHHHCCC--CCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 922018899959992799999998776-0111014--4588788986334-88879999876993279999889898535
Q 002458 534 PPSIVQLVNLKIFSLHGCKGQPPKILS-SNFFLSL--LLPNKNSDSMCLS-FPRFTGLSSLQTLDLSDCNLLEGAIPSDI 609 (919)
Q Consensus 534 p~~i~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~l--~~~~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l 609 (919)
|..+..+++|+.|++++|......+.. ...+..+ +....+....... ...+..+++|+.|++++|. +.+..+..+
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 396 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAF 396 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTT
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCC-CCCCCHHHH
T ss_conf 0233015768988898997444346245506675898878899666456752210567888989898996-775788873
Q ss_pred CCCCCCCEEECCCCCCCCC-C-HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCC--CC
Q ss_conf 8998888652889988437-4-766606999699447676687588898765276205887642101000126999--85
Q 002458 610 GSLFSLEAIDLSGNNFFSL-P-SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSP--NI 685 (919)
Q Consensus 610 ~~l~~L~~L~Ls~n~l~~l-p-~~l~~l~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~~L~~l~~~~n~~~~~--~~ 685 (919)
..+++|+.|++++|.++.. | ..+..+++|+.|++++|......|. .+.++++|+.+.+..|..... ..
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~ 468 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ--------LFDGLPALQHLNLQGNHFPKGNIQK 468 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT--------TTTTCTTCCEEECTTCBCGGGEECS
T ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHH--------HHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 47745776878888677756521241765588898989855776877--------8737887888989899888543454
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 057526554013333346889999999741189999861885179998
Q 002458 686 ALNFLNCFKLVEDQVSKDNLAVTLMKQWLLEVPNCSSQFHIFLPGNEI 733 (919)
Q Consensus 686 ~~~~~~c~~L~~l~l~~n~l~~~~~~~~~~~~~~~~~~~~~~l~g~~i 733 (919)
...+.++++|+.+++++|.+.+..+. .+.....+..+.+.+|.+
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCDLSSIDQH----AFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp SCGGGGCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCC
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCHH----HHCCCCCCCEEECCCCCC
T ss_conf 31240488766887999966706864----632656788898989806
Done!