Query 002459
Match_columns 919
No_of_seqs 760 out of 5050
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.2E-36 2.5E-41 369.3 47.9 475 369-862 89-679 (2102)
2 PLN03200 cellulose synthase-in 100.0 5.6E-36 1.2E-40 363.4 51.4 461 359-862 169-763 (2102)
3 KOG4224 Armadillo repeat prote 100.0 6.2E-34 1.4E-38 279.0 24.5 418 381-880 87-507 (550)
4 KOG4224 Armadillo repeat prote 100.0 2.7E-33 5.8E-38 274.6 23.3 370 371-760 118-497 (550)
5 KOG0166 Karyopherin (importin) 100.0 1.5E-29 3.2E-34 268.6 34.4 374 365-757 96-487 (514)
6 KOG0166 Karyopherin (importin) 100.0 1.3E-28 2.9E-33 261.4 36.1 359 381-754 68-434 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 3.1E-29 6.8E-34 244.0 28.6 370 366-756 102-496 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.5E-27 3.3E-32 232.3 21.9 360 381-755 73-442 (526)
9 KOG4341 F-box protein containi 100.0 1.1E-28 2.4E-33 248.9 8.2 306 39-352 71-392 (483)
10 KOG2120 SCF ubiquitin ligase, 99.9 3.3E-27 7.2E-32 227.2 12.1 242 37-282 95-391 (419)
11 PF05804 KAP: Kinesin-associat 99.9 4.2E-23 9.1E-28 233.0 38.7 377 359-759 271-652 (708)
12 PF05804 KAP: Kinesin-associat 99.9 1E-21 2.2E-26 221.8 36.0 332 382-739 253-589 (708)
13 KOG1048 Neural adherens juncti 99.9 5.2E-21 1.1E-25 210.0 26.9 367 376-754 230-682 (717)
14 KOG2122 Beta-catenin-binding p 99.8 1.6E-19 3.5E-24 204.8 25.3 364 383-761 201-606 (2195)
15 KOG1048 Neural adherens juncti 99.8 4.4E-19 9.4E-24 195.0 24.4 321 430-759 235-644 (717)
16 KOG2122 Beta-catenin-binding p 99.8 2.2E-18 4.8E-23 195.7 26.7 382 367-763 223-655 (2195)
17 KOG4500 Rho/Rac GTPase guanine 99.8 3.3E-17 7.2E-22 165.6 29.0 482 359-885 30-547 (604)
18 KOG4341 F-box protein containi 99.8 5.9E-20 1.3E-24 186.3 7.7 248 38-300 164-423 (483)
19 KOG4199 Uncharacterized conser 99.7 1.2E-15 2.5E-20 149.8 27.0 321 425-756 101-444 (461)
20 KOG4199 Uncharacterized conser 99.7 5.5E-15 1.2E-19 145.2 29.1 314 389-720 117-450 (461)
21 KOG4500 Rho/Rac GTPase guanine 99.7 2.2E-14 4.8E-19 145.4 25.5 363 380-754 88-473 (604)
22 PF10508 Proteasom_PSMB: Prote 99.6 3.3E-12 7.3E-17 144.3 34.9 342 378-733 76-440 (503)
23 PRK09687 putative lyase; Provi 99.6 7.2E-13 1.6E-17 137.0 25.6 257 427-752 22-278 (280)
24 KOG1222 Kinesin associated pro 99.6 4E-12 8.6E-17 130.8 30.2 349 391-758 275-665 (791)
25 KOG3665 ZYG-1-like serine/thre 99.6 4.8E-12 1E-16 146.0 34.4 578 81-738 63-679 (699)
26 KOG1222 Kinesin associated pro 99.6 7.8E-13 1.7E-17 135.9 23.2 346 361-723 287-673 (791)
27 PF04826 Arm_2: Armadillo-like 99.6 6.9E-13 1.5E-17 133.6 22.7 200 371-585 4-206 (254)
28 PF10508 Proteasom_PSMB: Prote 99.5 8.1E-12 1.7E-16 141.3 33.5 352 383-756 42-420 (503)
29 PRK09687 putative lyase; Provi 99.5 1E-12 2.2E-17 135.9 23.6 253 381-711 25-279 (280)
30 PRK13800 putative oxidoreducta 99.5 3.5E-12 7.6E-17 154.9 31.3 274 381-753 623-896 (897)
31 PF04826 Arm_2: Armadillo-like 99.5 1.9E-12 4.1E-17 130.4 22.1 201 550-759 8-208 (254)
32 PRK13800 putative oxidoreducta 99.4 3.9E-11 8.6E-16 145.8 27.8 247 426-754 619-865 (897)
33 KOG2120 SCF ubiquitin ligase, 99.4 3.1E-13 6.7E-18 131.5 6.1 199 125-329 185-390 (419)
34 KOG3665 ZYG-1-like serine/thre 99.4 1.4E-10 3E-15 134.0 27.0 198 103-306 60-277 (699)
35 KOG1947 Leucine rich repeat pr 99.3 4.2E-12 9.2E-17 146.6 12.1 168 123-300 241-423 (482)
36 KOG1293 Proteins containing ar 99.3 7.8E-10 1.7E-14 119.5 26.8 386 363-763 35-540 (678)
37 cd00116 LRR_RI Leucine-rich re 99.3 1E-10 2.2E-15 126.9 19.4 186 102-295 80-294 (319)
38 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-10 2.9E-15 126.0 20.1 213 80-300 25-271 (319)
39 cd00256 VATPase_H VATPase_H, r 99.3 4.1E-09 8.9E-14 113.2 28.5 363 332-713 13-424 (429)
40 KOG1947 Leucine rich repeat pr 99.2 6.2E-11 1.3E-15 136.9 10.7 172 123-295 186-368 (482)
41 PF01602 Adaptin_N: Adaptin N 99.1 1.4E-08 3.1E-13 118.3 28.4 326 379-756 42-369 (526)
42 cd00020 ARM Armadillo/beta-cat 99.1 1.2E-09 2.7E-14 99.1 14.9 116 423-541 2-119 (120)
43 PF01602 Adaptin_N: Adaptin N 99.1 4.5E-08 9.7E-13 114.2 30.7 327 380-756 115-444 (526)
44 KOG1909 Ran GTPase-activating 99.1 8.6E-10 1.9E-14 110.8 12.6 182 101-289 90-309 (382)
45 cd00256 VATPase_H VATPase_H, r 99.1 8.1E-08 1.8E-12 103.4 28.5 320 428-755 53-424 (429)
46 cd00020 ARM Armadillo/beta-cat 99.1 2E-09 4.4E-14 97.6 13.2 116 596-714 3-120 (120)
47 KOG1293 Proteins containing ar 99.0 3.7E-08 8E-13 106.8 23.4 365 385-761 15-495 (678)
48 KOG2171 Karyopherin (importin) 99.0 1.6E-06 3.4E-11 100.7 36.3 419 381-864 6-462 (1075)
49 PF12937 F-box-like: F-box-lik 99.0 2.2E-10 4.9E-15 83.1 3.5 47 40-86 1-47 (47)
50 KOG2171 Karyopherin (importin) 99.0 2.8E-07 6E-12 106.7 29.6 357 381-762 120-510 (1075)
51 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.8E-08 1E-12 104.2 19.1 271 332-619 13-304 (312)
52 KOG3678 SARM protein (with ste 98.9 7E-08 1.5E-12 99.7 17.4 278 460-759 171-455 (832)
53 KOG0168 Putative ubiquitin fus 98.9 6E-07 1.3E-11 99.8 25.0 257 381-652 169-437 (1051)
54 KOG2759 Vacuolar H+-ATPase V1 98.9 5.7E-07 1.2E-11 93.0 22.4 330 380-714 66-438 (442)
55 KOG3207 Beta-tubulin folding c 98.8 8.2E-10 1.8E-14 114.0 1.5 182 103-289 121-312 (505)
56 KOG0168 Putative ubiquitin fus 98.8 1.1E-06 2.5E-11 97.6 25.2 353 365-736 197-653 (1051)
57 KOG1909 Ran GTPase-activating 98.8 8.1E-08 1.8E-12 96.9 14.7 146 148-300 89-262 (382)
58 KOG0946 ER-Golgi vesicle-tethe 98.8 8.9E-06 1.9E-10 90.1 31.1 326 428-763 22-406 (970)
59 PF03224 V-ATPase_H_N: V-ATPas 98.8 3.4E-07 7.4E-12 97.7 20.0 226 471-705 57-305 (312)
60 KOG2759 Vacuolar H+-ATPase V1 98.7 1.5E-06 3.3E-11 89.9 20.6 279 382-672 117-437 (442)
61 KOG2160 Armadillo/beta-catenin 98.7 1.2E-06 2.6E-11 89.7 19.7 186 389-584 93-282 (342)
62 KOG0946 ER-Golgi vesicle-tethe 98.7 1.8E-05 3.9E-10 87.8 29.5 325 381-723 24-409 (970)
63 KOG4413 26S proteasome regulat 98.7 7.1E-06 1.5E-10 81.6 23.8 342 382-733 85-459 (524)
64 KOG2973 Uncharacterized conser 98.7 4.4E-06 9.5E-11 82.8 22.2 294 431-757 6-316 (353)
65 KOG3678 SARM protein (with ste 98.7 9.8E-07 2.1E-11 91.4 18.5 270 372-672 173-451 (832)
66 KOG2160 Armadillo/beta-catenin 98.7 1.1E-06 2.4E-11 89.9 18.2 187 439-630 94-283 (342)
67 TIGR02270 conserved hypothetic 98.7 7.1E-06 1.5E-10 89.3 24.8 243 427-756 53-296 (410)
68 KOG2023 Nuclear transport rece 98.6 1.4E-06 2.9E-11 94.5 18.0 309 380-714 129-505 (885)
69 KOG3207 Beta-tubulin folding c 98.6 7.5E-09 1.6E-13 107.0 1.1 203 81-294 124-341 (505)
70 PTZ00429 beta-adaptin; Provisi 98.6 4.8E-05 1E-09 88.9 31.6 326 382-757 71-398 (746)
71 KOG2973 Uncharacterized conser 98.6 7.3E-06 1.6E-10 81.3 20.8 271 383-672 7-314 (353)
72 PLN00113 leucine-rich repeat r 98.6 5.5E-08 1.2E-12 122.1 7.2 36 101-136 91-129 (968)
73 PTZ00429 beta-adaptin; Provisi 98.6 0.00022 4.7E-09 83.6 35.7 323 381-756 142-471 (746)
74 TIGR02270 conserved hypothetic 98.6 1.3E-05 2.9E-10 87.2 24.2 242 379-714 54-296 (410)
75 PF05536 Neurochondrin: Neuroc 98.5 8.5E-05 1.8E-09 84.5 30.5 156 380-543 6-169 (543)
76 PLN00113 leucine-rich repeat r 98.5 7.9E-08 1.7E-12 120.7 6.5 177 101-289 116-295 (968)
77 KOG1789 Endocytosis protein RM 98.5 0.00012 2.7E-09 83.2 29.4 338 420-760 1419-1887(2235)
78 KOG2023 Nuclear transport rece 98.4 3.5E-06 7.6E-11 91.4 15.0 356 382-763 396-782 (885)
79 COG1413 FOG: HEAT repeat [Ener 98.4 0.00015 3.2E-09 78.9 27.9 248 379-713 43-303 (335)
80 PLN03210 Resistant to P. syrin 98.4 4.1E-07 8.8E-12 114.6 8.5 85 204-295 801-886 (1153)
81 KOG4646 Uncharacterized conser 98.3 5.8E-06 1.3E-10 71.3 11.0 132 600-734 16-149 (173)
82 KOG4646 Uncharacterized conser 98.3 7.5E-06 1.6E-10 70.6 11.0 134 427-563 15-150 (173)
83 KOG1789 Endocytosis protein RM 98.3 0.00011 2.4E-09 83.6 23.0 286 445-738 1742-2142(2235)
84 COG1413 FOG: HEAT repeat [Ener 98.3 0.00018 3.9E-09 78.3 24.1 253 428-758 43-306 (335)
85 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00036 7.8E-09 75.3 25.4 288 458-754 14-362 (371)
86 KOG1242 Protein containing ada 98.3 0.00049 1.1E-08 75.6 25.9 339 381-757 98-445 (569)
87 KOG4413 26S proteasome regulat 98.2 0.00031 6.7E-09 70.2 22.1 318 428-756 82-439 (524)
88 smart00256 FBOX A Receptor for 98.2 1.1E-06 2.5E-11 61.8 3.9 40 43-82 1-40 (41)
89 KOG0212 Uncharacterized conser 98.2 6.5E-05 1.4E-09 80.5 18.1 350 376-755 81-443 (675)
90 PF00646 F-box: F-box domain; 98.2 2.5E-07 5.5E-12 67.7 0.2 43 39-81 2-44 (48)
91 KOG2734 Uncharacterized conser 98.2 0.00045 9.6E-09 72.1 22.8 264 364-630 110-401 (536)
92 KOG4194 Membrane glycoprotein 98.2 1.1E-06 2.5E-11 94.2 3.8 84 221-311 263-351 (873)
93 PF14664 RICTOR_N: Rapamycin-i 98.2 0.0015 3.4E-08 70.5 27.7 305 381-712 27-362 (371)
94 PLN03210 Resistant to P. syrin 98.1 2.9E-06 6.4E-11 106.9 7.2 82 102-190 633-715 (1153)
95 KOG1062 Vesicle coat complex A 98.1 0.0014 3E-08 73.7 26.7 335 381-757 144-545 (866)
96 KOG1241 Karyopherin (importin) 98.1 0.0031 6.7E-08 70.6 28.4 353 384-756 222-626 (859)
97 KOG0212 Uncharacterized conser 98.1 7.2E-05 1.6E-09 80.1 15.4 320 425-760 81-410 (675)
98 KOG2734 Uncharacterized conser 98.1 0.0015 3.3E-08 68.3 23.3 260 448-714 104-400 (536)
99 KOG1241 Karyopherin (importin) 98.0 0.00093 2E-08 74.6 21.8 352 381-762 131-536 (859)
100 KOG1062 Vesicle coat complex A 97.9 0.0042 9E-08 70.1 25.7 302 389-738 117-453 (866)
101 PF00514 Arm: Armadillo/beta-c 97.9 2.1E-05 4.5E-10 55.0 4.8 41 458-498 1-41 (41)
102 PF14580 LRR_9: Leucine-rich r 97.9 3.3E-06 7.1E-11 80.2 0.9 37 251-287 111-149 (175)
103 KOG2982 Uncharacterized conser 97.9 6.7E-06 1.4E-10 81.2 2.9 179 106-289 48-235 (418)
104 PF14580 LRR_9: Leucine-rich r 97.9 2.6E-06 5.5E-11 80.9 -0.1 110 178-295 18-129 (175)
105 KOG4194 Membrane glycoprotein 97.9 2.9E-06 6.3E-11 91.2 0.2 191 104-308 79-276 (873)
106 COG5369 Uncharacterized conser 97.9 0.00015 3.2E-09 77.2 12.5 296 447-755 408-740 (743)
107 KOG0444 Cytoskeletal regulator 97.8 5.5E-07 1.2E-11 97.0 -5.9 185 101-300 171-361 (1255)
108 KOG1059 Vesicle coat complex A 97.8 0.017 3.7E-07 64.4 27.6 214 382-630 147-366 (877)
109 KOG1060 Vesicle coat complex A 97.8 0.014 3.1E-07 65.7 27.0 252 382-672 38-349 (968)
110 KOG1242 Protein containing ada 97.8 0.0035 7.7E-08 69.1 22.1 336 382-756 137-483 (569)
111 PF13646 HEAT_2: HEAT repeats; 97.8 7.5E-05 1.6E-09 63.0 7.6 88 643-752 1-88 (88)
112 PF13646 HEAT_2: HEAT repeats; 97.8 7.5E-05 1.6E-09 63.0 7.6 86 381-494 1-88 (88)
113 KOG0618 Serine/threonine phosp 97.8 8.2E-06 1.8E-10 92.8 1.8 107 181-290 361-488 (1081)
114 PF05536 Neurochondrin: Neuroc 97.7 0.0026 5.7E-08 72.5 21.0 238 429-672 6-260 (543)
115 COG5238 RNA1 Ran GTPase-activa 97.7 0.0014 3E-08 64.5 15.3 200 94-300 22-263 (388)
116 PF00514 Arm: Armadillo/beta-c 97.7 8.7E-05 1.9E-09 51.8 4.9 39 418-456 2-40 (41)
117 COG5238 RNA1 Ran GTPase-activa 97.7 0.00023 5E-09 69.7 9.2 35 180-215 186-224 (388)
118 COG5240 SEC21 Vesicle coat com 97.7 0.076 1.6E-06 57.8 28.5 413 383-862 69-554 (898)
119 KOG0213 Splicing factor 3b, su 97.7 0.0019 4.2E-08 71.6 17.1 342 381-759 718-1068(1172)
120 KOG3864 Uncharacterized conser 97.6 5.3E-05 1.1E-09 71.2 3.8 73 165-238 112-187 (221)
121 KOG1824 TATA-binding protein-i 97.6 0.06 1.3E-06 62.1 28.0 288 389-714 580-886 (1233)
122 PF10165 Ric8: Guanine nucleot 97.6 0.0075 1.6E-07 67.4 21.3 256 366-631 9-339 (446)
123 COG5369 Uncharacterized conser 97.6 0.0017 3.8E-08 69.4 14.9 162 381-552 433-604 (743)
124 KOG1824 TATA-binding protein-i 97.6 0.015 3.3E-07 66.7 23.1 345 391-763 621-1043(1233)
125 KOG0213 Splicing factor 3b, su 97.6 0.0074 1.6E-07 67.2 19.9 288 431-751 802-1102(1172)
126 KOG2259 Uncharacterized conser 97.6 0.0049 1.1E-07 67.8 18.4 299 430-762 200-517 (823)
127 COG5181 HSH155 U2 snRNP splice 97.5 0.0034 7.3E-08 68.3 16.4 258 430-717 606-873 (975)
128 KOG1259 Nischarin, modulator o 97.5 7.9E-05 1.7E-09 73.8 3.8 180 94-289 173-385 (490)
129 KOG0567 HEAT repeat-containing 97.5 0.016 3.5E-07 57.0 18.7 228 428-713 36-279 (289)
130 KOG2259 Uncharacterized conser 97.4 0.0062 1.3E-07 67.1 17.3 256 384-677 203-479 (823)
131 KOG3864 Uncharacterized conser 97.4 0.00013 2.9E-09 68.5 4.1 90 126-220 102-191 (221)
132 KOG1061 Vesicle coat complex A 97.4 0.0058 1.3E-07 69.0 17.4 346 363-763 75-460 (734)
133 KOG1517 Guanine nucleotide bin 97.4 0.0039 8.4E-08 72.0 16.1 163 597-760 509-675 (1387)
134 COG5231 VMA13 Vacuolar H+-ATPa 97.4 0.0078 1.7E-07 60.4 16.1 232 476-713 156-427 (432)
135 KOG1059 Vesicle coat complex A 97.4 0.39 8.5E-06 54.1 30.2 213 472-715 147-366 (877)
136 COG5215 KAP95 Karyopherin (imp 97.4 0.048 1E-06 59.3 22.6 306 432-759 98-440 (858)
137 KOG0567 HEAT repeat-containing 97.4 0.047 1E-06 53.9 20.5 228 471-754 38-278 (289)
138 KOG0444 Cytoskeletal regulator 97.4 2E-05 4.4E-10 85.3 -2.5 159 125-300 150-312 (1255)
139 KOG1517 Guanine nucleotide bin 97.4 0.0046 1E-07 71.5 15.7 236 471-717 474-735 (1387)
140 PF10165 Ric8: Guanine nucleot 97.3 0.015 3.3E-07 64.9 19.9 272 448-727 1-348 (446)
141 PRK15370 E3 ubiquitin-protein 97.3 0.0019 4E-08 76.5 12.6 73 227-310 325-397 (754)
142 KOG1061 Vesicle coat complex A 97.3 0.015 3.2E-07 65.9 18.7 346 382-769 52-428 (734)
143 KOG1077 Vesicle coat complex A 97.3 0.085 1.8E-06 58.9 23.7 287 432-749 115-426 (938)
144 KOG1060 Vesicle coat complex A 97.3 0.16 3.4E-06 57.7 25.9 373 431-858 38-453 (968)
145 COG5240 SEC21 Vesicle coat com 97.2 0.032 7E-07 60.5 19.4 295 367-714 257-555 (898)
146 PRK14707 hypothetical protein; 97.2 0.68 1.5E-05 58.6 32.6 357 376-752 328-693 (2710)
147 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.02 4.3E-07 57.6 16.5 235 433-672 154-427 (432)
148 KOG0211 Protein phosphatase 2A 97.2 0.12 2.6E-06 60.6 25.3 308 377-714 235-547 (759)
149 KOG1077 Vesicle coat complex A 97.2 0.14 3.1E-06 57.2 24.2 334 382-752 114-484 (938)
150 KOG2982 Uncharacterized conser 97.2 0.00038 8.3E-09 69.1 4.0 187 95-286 89-287 (418)
151 COG5181 HSH155 U2 snRNP splice 97.1 0.011 2.4E-07 64.4 14.7 293 381-713 606-911 (975)
152 COG5215 KAP95 Karyopherin (imp 97.1 0.058 1.3E-06 58.7 19.8 341 380-739 322-693 (858)
153 smart00185 ARM Armadillo/beta- 97.1 0.0014 2.9E-08 45.8 5.3 40 459-498 2-41 (41)
154 KOG0618 Serine/threonine phosp 97.0 0.00018 4E-09 82.3 -0.1 156 127-300 361-521 (1081)
155 PRK14707 hypothetical protein; 97.0 1.5 3.2E-05 55.8 31.9 359 376-752 244-609 (2710)
156 KOG1859 Leucine-rich repeat pr 96.9 0.00025 5.4E-09 78.8 0.1 52 95-146 76-130 (1096)
157 KOG1240 Protein kinase contain 96.8 0.11 2.4E-06 61.7 20.6 289 430-755 424-724 (1431)
158 smart00185 ARM Armadillo/beta- 96.8 0.003 6.6E-08 44.0 5.4 38 420-457 4-41 (41)
159 KOG2123 Uncharacterized conser 96.8 0.00049 1.1E-08 67.7 1.6 114 179-300 19-136 (388)
160 KOG1058 Vesicle coat complex C 96.7 0.21 4.6E-06 56.4 20.9 327 384-758 104-465 (948)
161 PRK15387 E3 ubiquitin-protein 96.7 0.00086 1.9E-08 78.8 2.9 80 205-295 382-461 (788)
162 KOG1943 Beta-tubulin folding c 96.7 2.2 4.8E-05 50.8 31.6 314 427-754 340-703 (1133)
163 PF09759 Atx10homo_assoc: Spin 96.7 0.0058 1.3E-07 51.7 6.6 65 444-508 2-70 (102)
164 PRK15387 E3 ubiquitin-protein 96.6 0.0012 2.6E-08 77.6 3.1 32 253-289 382-413 (788)
165 KOG3036 Protein involved in ce 96.6 0.12 2.6E-06 50.4 15.7 181 528-713 94-290 (293)
166 KOG4308 LRR-containing protein 96.6 0.0028 6E-08 71.0 5.6 191 127-324 89-313 (478)
167 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0037 8E-08 47.0 4.5 55 658-712 1-55 (55)
168 PF13855 LRR_8: Leucine rich r 96.6 0.00046 1E-08 53.3 -0.5 57 205-264 1-60 (61)
169 KOG1943 Beta-tubulin folding c 96.6 1 2.3E-05 53.4 25.8 315 376-714 338-705 (1133)
170 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.37 8E-06 57.1 22.4 237 464-716 112-408 (802)
171 PRK15370 E3 ubiquitin-protein 96.5 0.0022 4.8E-08 75.9 4.2 139 103-265 241-379 (754)
172 PF12348 CLASP_N: CLASP N term 96.4 0.063 1.4E-06 54.6 14.0 179 523-714 17-206 (228)
173 smart00367 LRR_CC Leucine-rich 96.4 0.004 8.6E-08 38.2 3.0 24 226-249 1-24 (26)
174 KOG2739 Leucine-rich acidic nu 96.4 0.00038 8.3E-09 68.5 -2.5 85 205-290 43-128 (260)
175 PF12348 CLASP_N: CLASP N term 96.3 0.067 1.5E-06 54.4 13.8 182 438-630 17-207 (228)
176 KOG2997 F-box protein FBX9 [Ge 96.3 0.0021 4.6E-08 64.5 2.4 46 38-83 105-155 (366)
177 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0094 2E-07 44.7 5.3 54 442-496 1-55 (55)
178 PRK15386 type III secretion pr 96.3 0.0085 1.8E-07 64.5 6.8 160 100-294 49-216 (426)
179 KOG4535 HEAT and armadillo rep 96.3 0.019 4.2E-07 60.8 9.1 299 441-755 268-602 (728)
180 PF07814 WAPL: Wings apart-lik 96.3 0.55 1.2E-05 51.1 20.8 277 429-716 22-357 (361)
181 PF12460 MMS19_C: RNAPII trans 96.2 2.6 5.6E-05 47.2 26.1 344 382-759 2-397 (415)
182 PF04078 Rcd1: Cell differenti 96.2 0.24 5.2E-06 49.5 15.6 223 482-713 8-261 (262)
183 smart00367 LRR_CC Leucine-rich 96.1 0.0061 1.3E-07 37.4 2.9 24 178-201 1-24 (26)
184 KOG4308 LRR-containing protein 96.1 0.0023 5E-08 71.6 1.8 188 105-300 89-311 (478)
185 PF11841 DUF3361: Domain of un 96.1 0.12 2.6E-06 47.7 12.4 124 504-630 5-132 (160)
186 KOG1240 Protein kinase contain 96.1 0.47 1E-05 56.8 19.7 293 382-714 425-725 (1431)
187 PF12719 Cnd3: Nuclear condens 96.1 0.49 1.1E-05 50.2 19.0 168 384-566 32-209 (298)
188 PF09759 Atx10homo_assoc: Spin 96.0 0.02 4.2E-07 48.5 6.3 64 661-724 3-70 (102)
189 KOG1078 Vesicle coat complex C 96.0 4.3 9.4E-05 46.8 31.5 202 381-630 102-312 (865)
190 KOG0211 Protein phosphatase 2A 95.9 0.29 6.4E-06 57.4 17.5 338 380-755 317-663 (759)
191 PF12717 Cnd1: non-SMC mitotic 95.9 0.28 6E-06 47.5 14.8 92 392-499 1-93 (178)
192 PF13764 E3_UbLigase_R4: E3 ub 95.9 1.1 2.4E-05 53.2 22.0 248 423-675 112-408 (802)
193 COG5096 Vesicle coat complex, 95.8 0.21 4.6E-06 58.0 15.5 169 563-757 28-196 (757)
194 KOG0281 Beta-TrCP (transducin 95.8 0.0045 9.7E-08 62.4 1.6 64 37-101 72-139 (499)
195 KOG1832 HIV-1 Vpr-binding prot 95.7 0.5 1.1E-05 54.3 17.3 343 371-724 342-783 (1516)
196 KOG4151 Myosin assembly protei 95.7 0.12 2.6E-06 59.1 12.8 204 497-714 491-699 (748)
197 KOG2123 Uncharacterized conser 95.7 0.0024 5.1E-08 63.1 -0.6 82 126-218 20-101 (388)
198 KOG1058 Vesicle coat complex C 95.7 0.9 1.9E-05 51.7 18.9 276 435-761 106-393 (948)
199 KOG2062 26S proteasome regulat 95.7 1.2 2.6E-05 50.6 19.8 302 385-758 347-655 (929)
200 PF11698 V-ATPase_H_C: V-ATPas 95.6 0.076 1.7E-06 46.3 8.4 69 381-456 45-114 (119)
201 PF11841 DUF3361: Domain of un 95.5 0.25 5.5E-06 45.6 11.9 125 634-759 4-134 (160)
202 PF05004 IFRD: Interferon-rela 95.5 1.2 2.5E-05 47.3 18.9 191 430-627 45-255 (309)
203 KOG2062 26S proteasome regulat 95.5 0.6 1.3E-05 52.9 16.7 112 656-781 531-645 (929)
204 PF13855 LRR_8: Leucine rich r 95.4 0.0034 7.3E-08 48.4 -0.4 56 179-237 1-59 (61)
205 KOG1078 Vesicle coat complex C 95.4 1.6 3.4E-05 50.1 19.7 283 382-713 248-531 (865)
206 KOG2739 Leucine-rich acidic nu 95.4 0.009 2E-07 59.1 2.2 59 178-237 64-126 (260)
207 KOG1259 Nischarin, modulator o 95.3 0.0049 1.1E-07 61.4 0.2 139 142-290 173-341 (490)
208 KOG4535 HEAT and armadillo rep 95.3 0.08 1.7E-06 56.4 8.9 184 444-630 407-604 (728)
209 PF04063 DUF383: Domain of unk 95.3 0.11 2.5E-06 50.2 9.4 125 612-736 7-157 (192)
210 PF12799 LRR_4: Leucine Rich r 95.3 0.012 2.7E-07 41.5 2.1 34 254-289 2-35 (44)
211 KOG4658 Apoptotic ATPase [Sign 95.2 0.019 4.2E-07 69.3 4.7 106 101-215 543-652 (889)
212 KOG4151 Myosin assembly protei 95.2 0.42 9.2E-06 54.9 14.7 202 457-672 492-698 (748)
213 PF11698 V-ATPase_H_C: V-ATPas 95.1 0.069 1.5E-06 46.5 6.5 69 430-498 45-115 (119)
214 KOG0472 Leucine-rich repeat pr 95.0 0.053 1.2E-06 56.8 6.6 87 200-289 430-539 (565)
215 COG5096 Vesicle coat complex, 94.9 1.3 2.7E-05 51.9 17.6 166 388-584 28-195 (757)
216 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.12 2.6E-06 43.9 7.0 65 685-753 27-93 (97)
217 PF04063 DUF383: Domain of unk 94.8 0.24 5.1E-06 48.1 9.9 84 599-685 51-144 (192)
218 PF08569 Mo25: Mo25-like; Int 94.7 3.4 7.3E-05 44.1 19.3 204 505-719 71-288 (335)
219 KOG3036 Protein involved in ce 94.7 2.1 4.5E-05 42.2 15.8 140 442-584 93-247 (293)
220 KOG2611 Neurochondrin/leucine- 94.6 7 0.00015 42.4 20.8 134 383-520 15-162 (698)
221 PLN03150 hypothetical protein; 94.6 0.04 8.7E-07 64.9 5.3 79 207-289 420-501 (623)
222 PF08045 CDC14: Cell division 94.6 0.61 1.3E-05 47.1 12.6 99 443-542 106-207 (257)
223 PF06025 DUF913: Domain of Unk 94.6 2.2 4.8E-05 46.6 18.0 162 447-612 3-208 (379)
224 KOG4237 Extracellular matrix p 94.4 0.012 2.6E-07 61.3 0.3 38 103-140 91-130 (498)
225 KOG0915 Uncharacterized conser 94.4 3.4 7.4E-05 51.2 20.2 330 382-737 821-1183(1702)
226 PF08569 Mo25: Mo25-like; Int 94.4 1.7 3.7E-05 46.4 16.2 205 423-632 71-286 (335)
227 KOG2611 Neurochondrin/leucine- 94.3 3.1 6.8E-05 44.9 17.3 151 432-584 15-182 (698)
228 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.23 5E-06 42.1 7.2 68 427-497 26-95 (97)
229 KOG1859 Leucine-rich repeat pr 94.0 0.006 1.3E-07 68.3 -3.1 103 178-290 186-291 (1096)
230 PF04078 Rcd1: Cell differenti 93.9 3 6.6E-05 41.9 15.8 193 525-724 7-228 (262)
231 KOG2999 Regulator of Rac1, req 93.9 2 4.2E-05 47.3 15.3 154 430-585 85-243 (713)
232 PF05004 IFRD: Interferon-rela 93.6 3.5 7.5E-05 43.8 16.8 191 556-756 45-257 (309)
233 KOG0915 Uncharacterized conser 93.6 0.89 1.9E-05 55.9 13.3 306 431-761 821-1165(1702)
234 KOG1832 HIV-1 Vpr-binding prot 93.5 3.3 7.1E-05 48.1 16.8 297 447-760 328-695 (1516)
235 PF12799 LRR_4: Leucine Rich r 93.5 0.14 2.9E-06 36.2 4.1 31 206-237 2-34 (44)
236 KOG0617 Ras suppressor protein 93.4 0.00084 1.8E-08 61.1 -8.9 56 205-264 102-161 (264)
237 KOG4653 Uncharacterized conser 93.3 2.8 6.1E-05 48.7 15.9 222 512-752 726-960 (982)
238 KOG1644 U2-associated snRNP A' 93.1 0.083 1.8E-06 50.2 3.2 16 251-266 111-126 (233)
239 PF12717 Cnd1: non-SMC mitotic 93.0 4.1 8.8E-05 39.4 15.0 93 568-674 1-93 (178)
240 PRK15386 type III secretion pr 92.9 0.094 2E-06 56.7 3.9 118 148-291 49-169 (426)
241 PF13516 LRR_6: Leucine Rich r 92.9 0.067 1.4E-06 32.0 1.6 21 253-273 2-22 (24)
242 PF11701 UNC45-central: Myosin 92.9 0.4 8.6E-06 45.2 7.5 149 512-671 5-157 (157)
243 KOG4658 Apoptotic ATPase [Sign 92.8 0.1 2.2E-06 63.3 4.3 133 149-289 543-679 (889)
244 PLN03215 ascorbic acid mannose 92.7 0.096 2.1E-06 55.9 3.5 38 38-75 2-40 (373)
245 PF08045 CDC14: Cell division 92.3 1.6 3.5E-05 44.1 11.2 98 395-499 107-208 (257)
246 PF02985 HEAT: HEAT repeat; I 92.2 0.25 5.5E-06 31.7 3.7 28 430-457 2-29 (31)
247 PLN03150 hypothetical protein; 92.2 0.2 4.4E-06 59.0 5.7 106 180-290 419-527 (623)
248 KOG1788 Uncharacterized conser 92.1 26 0.00057 41.9 21.4 226 500-736 674-960 (2799)
249 KOG1020 Sister chromatid cohes 92.0 42 0.00092 42.3 32.1 60 682-743 1222-1281(1692)
250 KOG2999 Regulator of Rac1, req 91.9 11 0.00024 41.7 17.4 177 471-650 85-265 (713)
251 COG4886 Leucine-rich repeat (L 91.8 0.13 2.8E-06 57.4 3.4 171 103-290 116-289 (394)
252 PF11701 UNC45-central: Myosin 91.7 1.5 3.2E-05 41.3 9.9 143 383-539 7-156 (157)
253 PF01347 Vitellogenin_N: Lipop 91.5 6.2 0.00013 47.0 17.5 202 470-709 396-617 (618)
254 PF02985 HEAT: HEAT repeat; I 91.5 0.32 6.9E-06 31.2 3.6 28 471-498 2-29 (31)
255 KOG2025 Chromosome condensatio 91.4 17 0.00037 41.7 18.6 110 518-639 90-200 (892)
256 PF05918 API5: Apoptosis inhib 91.3 31 0.00068 39.3 22.5 175 432-629 27-207 (556)
257 PF07814 WAPL: Wings apart-lik 91.2 11 0.00024 41.1 17.4 276 381-674 23-356 (361)
258 PF06025 DUF913: Domain of Unk 91.1 19 0.00041 39.4 18.9 126 347-480 74-207 (379)
259 smart00638 LPD_N Lipoprotein N 90.9 22 0.00048 41.9 21.0 166 511-707 394-571 (574)
260 KOG2274 Predicted importin 9 [ 90.8 42 0.00091 39.9 25.8 258 355-630 424-690 (1005)
261 KOG2274 Predicted importin 9 [ 90.8 12 0.00026 44.1 17.3 227 524-759 461-692 (1005)
262 PF13516 LRR_6: Leucine Rich r 90.4 0.21 4.6E-06 29.8 1.9 21 179-200 2-22 (24)
263 PF14668 RICTOR_V: Rapamycin-i 90.0 1.1 2.4E-05 35.4 6.1 67 617-685 4-70 (73)
264 KOG0414 Chromosome condensatio 90.0 3.1 6.7E-05 50.2 12.2 140 381-544 921-1066(1251)
265 COG4886 Leucine-rich repeat (L 90.0 0.24 5.2E-06 55.3 3.3 147 104-266 141-290 (394)
266 PF14668 RICTOR_V: Rapamycin-i 89.8 1.4 3.1E-05 34.8 6.5 66 445-510 4-70 (73)
267 PF12719 Cnd3: Nuclear condens 89.7 6.3 0.00014 41.8 13.7 171 554-739 26-210 (298)
268 KOG1967 DNA repair/transcripti 89.5 5.4 0.00012 46.9 13.3 225 335-578 783-1018(1030)
269 KOG2032 Uncharacterized conser 89.5 13 0.00028 40.7 15.3 157 509-673 253-415 (533)
270 KOG0617 Ras suppressor protein 89.4 0.016 3.4E-07 53.1 -5.3 109 178-294 55-166 (264)
271 smart00368 LRR_RI Leucine rich 89.3 0.46 1E-05 29.7 2.8 24 253-276 2-25 (28)
272 PF05918 API5: Apoptosis inhib 89.2 2.6 5.5E-05 47.8 10.4 98 377-494 57-158 (556)
273 COG5116 RPN2 26S proteasome re 89.0 1.9 4.1E-05 47.4 8.8 90 684-781 550-642 (926)
274 KOG0531 Protein phosphatase 1, 88.7 0.18 3.8E-06 56.6 1.0 88 202-295 115-203 (414)
275 COG5209 RCD1 Uncharacterized p 88.7 2.6 5.5E-05 40.8 8.4 149 530-682 117-277 (315)
276 KOG1644 U2-associated snRNP A' 88.1 0.29 6.3E-06 46.7 1.9 83 176-262 61-149 (233)
277 KOG2032 Uncharacterized conser 87.9 25 0.00055 38.6 16.2 145 435-584 265-415 (533)
278 KOG2137 Protein kinase [Signal 87.7 10 0.00022 43.7 13.8 216 369-613 302-521 (700)
279 KOG1967 DNA repair/transcripti 87.1 8 0.00017 45.6 12.7 149 599-752 866-1020(1030)
280 KOG1248 Uncharacterized conser 87.1 54 0.0012 40.3 19.8 226 389-629 664-898 (1176)
281 KOG4653 Uncharacterized conser 86.6 17 0.00036 42.7 14.8 179 478-674 736-919 (982)
282 KOG2956 CLIP-associating prote 86.2 42 0.00091 36.8 16.6 145 555-713 330-476 (516)
283 KOG0472 Leucine-rich repeat pr 85.8 0.51 1.1E-05 49.8 2.3 108 147-266 431-541 (565)
284 KOG1020 Sister chromatid cohes 85.2 1.2E+02 0.0026 38.6 30.4 144 427-586 815-962 (1692)
285 KOG0531 Protein phosphatase 1, 85.2 0.079 1.7E-06 59.4 -4.2 33 255-289 234-266 (414)
286 smart00638 LPD_N Lipoprotein N 84.8 68 0.0015 37.8 19.9 165 555-746 394-568 (574)
287 COG5116 RPN2 26S proteasome re 84.7 50 0.0011 37.0 16.4 131 604-757 520-651 (926)
288 PF06371 Drf_GBD: Diaphanous G 83.7 5 0.00011 39.1 8.3 79 419-497 98-186 (187)
289 PF13013 F-box-like_2: F-box-l 82.3 1.3 2.9E-05 38.2 3.1 30 39-68 21-50 (109)
290 KOG2025 Chromosome condensatio 82.3 10 0.00023 43.3 10.6 103 642-751 86-188 (892)
291 PF11707 Npa1: Ribosome 60S bi 82.2 78 0.0017 34.1 18.9 158 381-545 58-240 (330)
292 PF06371 Drf_GBD: Diaphanous G 82.1 14 0.0003 36.0 10.8 109 428-541 66-186 (187)
293 KOG1566 Conserved protein Mo25 81.3 73 0.0016 33.2 16.0 205 423-631 74-288 (342)
294 KOG2956 CLIP-associating prote 81.2 53 0.0011 36.1 14.9 145 600-755 329-476 (516)
295 KOG1788 Uncharacterized conser 80.7 55 0.0012 39.4 15.7 279 359-672 664-981 (2799)
296 PF12460 MMS19_C: RNAPII trans 80.4 1E+02 0.0023 34.4 28.0 298 392-716 56-396 (415)
297 PF12031 DUF3518: Domain of un 79.9 4.8 0.0001 39.8 6.2 84 659-742 139-232 (257)
298 KOG1991 Nuclear transport rece 79.6 1.5E+02 0.0033 35.9 21.8 234 427-673 409-671 (1010)
299 PF11865 DUF3385: Domain of un 79.1 25 0.00054 33.2 10.8 145 428-583 10-156 (160)
300 KOG0301 Phospholipase A2-activ 79.1 65 0.0014 37.0 15.2 164 569-739 558-729 (745)
301 cd03568 VHS_STAM VHS domain fa 79.1 9.2 0.0002 35.3 7.7 71 428-498 37-110 (144)
302 PF12530 DUF3730: Protein of u 78.7 79 0.0017 32.0 17.9 131 477-628 9-150 (234)
303 PF01347 Vitellogenin_N: Lipop 78.3 48 0.0011 39.4 15.7 202 511-747 396-613 (618)
304 KOG3763 mRNA export factor TAP 78.1 3.8 8.2E-05 45.6 5.5 44 172-215 211-254 (585)
305 PF12530 DUF3730: Protein of u 77.8 84 0.0018 31.8 16.0 180 557-758 3-191 (234)
306 KOG0414 Chromosome condensatio 77.3 19 0.00041 43.9 11.1 141 471-630 921-1065(1251)
307 PF14225 MOR2-PAG1_C: Cell mor 76.8 96 0.0021 32.0 18.0 162 483-671 76-252 (262)
308 PF08324 PUL: PUL domain; Int 76.5 9.5 0.00021 39.7 8.1 158 601-758 64-233 (268)
309 COG5218 YCG1 Chromosome conden 76.3 1.3E+02 0.0028 34.1 16.2 73 685-758 91-163 (885)
310 PF12031 DUF3518: Domain of un 76.1 5 0.00011 39.7 5.2 83 615-699 139-230 (257)
311 cd03567 VHS_GGA VHS domain fam 75.6 14 0.00031 33.8 7.7 71 428-498 38-116 (139)
312 PF13306 LRR_5: Leucine rich r 75.0 0.79 1.7E-05 41.5 -0.5 33 203-235 56-89 (129)
313 KOG0301 Phospholipase A2-activ 75.0 79 0.0017 36.3 14.5 185 384-577 549-739 (745)
314 COG5209 RCD1 Uncharacterized p 74.1 18 0.00039 35.3 8.1 143 573-722 118-276 (315)
315 cd03569 VHS_Hrs_Vps27p VHS dom 74.1 16 0.00034 33.7 7.7 71 428-498 41-114 (142)
316 PF08324 PUL: PUL domain; Int 73.9 57 0.0012 33.9 13.1 176 486-665 80-266 (268)
317 PF14500 MMS19_N: Dos2-interac 73.9 95 0.0021 32.1 14.2 141 433-583 4-152 (262)
318 KOG4464 Signaling protein RIC- 73.7 1.4E+02 0.003 32.4 18.4 155 432-586 49-233 (532)
319 cd03561 VHS VHS domain family; 73.2 18 0.00039 32.9 7.9 72 428-499 37-113 (133)
320 KOG0274 Cdc4 and related F-box 73.1 1.8 3.8E-05 49.7 1.5 44 37-80 105-148 (537)
321 smart00368 LRR_RI Leucine rich 73.1 5.8 0.00013 24.7 3.2 22 180-202 3-24 (28)
322 COG5218 YCG1 Chromosome conden 72.0 1.8E+02 0.004 33.0 16.2 111 428-548 91-202 (885)
323 PF10363 DUF2435: Protein of u 71.7 12 0.00026 31.4 5.8 72 687-760 5-76 (92)
324 PF14726 RTTN_N: Rotatin, an a 71.5 36 0.00077 28.9 8.5 69 426-494 28-96 (98)
325 KOG1248 Uncharacterized conser 71.5 2.7E+02 0.0058 34.7 29.5 217 524-755 665-897 (1176)
326 PF11865 DUF3385: Domain of un 71.5 47 0.001 31.3 10.5 143 471-627 12-155 (160)
327 PF14500 MMS19_N: Dos2-interac 71.4 78 0.0017 32.7 12.9 222 474-714 4-237 (262)
328 PF13504 LRR_7: Leucine rich r 70.9 3.1 6.7E-05 22.4 1.4 10 280-289 3-12 (17)
329 cd03568 VHS_STAM VHS domain fa 69.0 18 0.0004 33.3 7.0 72 380-457 38-110 (144)
330 PF08167 RIX1: rRNA processing 68.7 22 0.00048 33.8 7.7 107 429-541 26-142 (165)
331 smart00288 VHS Domain present 68.3 25 0.00055 31.9 7.7 71 428-498 37-111 (133)
332 PF11791 Aconitase_B_N: Aconit 68.1 4.7 0.0001 36.7 2.8 29 471-499 96-124 (154)
333 COG5098 Chromosome condensatio 67.4 1.1E+02 0.0024 35.4 13.4 139 382-545 895-1040(1128)
334 PF11864 DUF3384: Domain of un 67.0 2.3E+02 0.005 32.2 20.5 252 441-713 42-329 (464)
335 PF12830 Nipped-B_C: Sister ch 65.7 1.3E+02 0.0029 29.1 12.7 64 428-499 8-75 (187)
336 cd03569 VHS_Hrs_Vps27p VHS dom 65.5 39 0.00086 31.1 8.4 73 379-457 41-114 (142)
337 cd03561 VHS VHS domain family; 65.2 53 0.0011 29.8 9.2 76 599-674 36-113 (133)
338 KOG1820 Microtubule-associated 65.2 1.8E+02 0.0038 35.4 15.6 177 564-755 263-442 (815)
339 KOG4237 Extracellular matrix p 65.1 2 4.3E-05 45.5 -0.2 10 179-188 91-100 (498)
340 PF10363 DUF2435: Protein of u 64.8 11 0.00023 31.7 4.1 69 430-499 5-73 (92)
341 KOG3763 mRNA export factor TAP 63.8 13 0.00029 41.5 5.7 88 143-234 210-308 (585)
342 KOG1820 Microtubule-associated 63.5 1.4E+02 0.003 36.3 14.3 176 478-672 262-442 (815)
343 PF08167 RIX1: rRNA processing 63.3 29 0.00063 32.9 7.4 110 600-714 25-143 (165)
344 PF09372 PRANC: PRANC domain; 62.0 6.8 0.00015 33.3 2.6 26 38-63 70-95 (97)
345 PF07723 LRR_2: Leucine Rich R 62.0 5.9 0.00013 24.2 1.6 25 181-205 2-26 (26)
346 PF08506 Cse1: Cse1; InterPro 62.0 2.5E+02 0.0053 30.8 17.7 148 548-709 204-370 (370)
347 cd03567 VHS_GGA VHS domain fam 61.9 75 0.0016 29.1 9.4 72 380-457 39-116 (139)
348 KOG2137 Protein kinase [Signal 61.5 51 0.0011 38.3 9.9 135 425-567 386-521 (700)
349 smart00288 VHS Domain present 60.8 57 0.0012 29.6 8.5 74 599-673 36-111 (133)
350 KOG1949 Uncharacterized conser 59.8 1.8E+02 0.0039 33.9 13.4 148 430-583 176-330 (1005)
351 KOG2933 Uncharacterized conser 58.4 70 0.0015 33.2 9.2 137 600-751 88-229 (334)
352 KOG1243 Protein kinase [Genera 57.1 3.8E+02 0.0081 31.5 15.6 186 507-713 327-514 (690)
353 PF14726 RTTN_N: Rotatin, an a 55.9 1.1E+02 0.0023 26.1 8.5 69 598-669 28-96 (98)
354 KOG2005 26S proteasome regulat 55.2 2.1E+02 0.0047 33.1 13.0 198 552-752 46-292 (878)
355 PF08216 CTNNBL: Catenin-beta- 54.6 14 0.0003 31.7 3.1 42 446-487 64-105 (108)
356 KOG4579 Leucine-rich repeat (L 53.1 9.7 0.00021 34.3 2.0 10 180-189 28-37 (177)
357 KOG1566 Conserved protein Mo25 52.9 3E+02 0.0064 28.9 19.1 205 375-587 75-289 (342)
358 PRK09169 hypothetical protein; 52.4 7.8E+02 0.017 33.6 32.3 78 835-913 753-832 (2316)
359 PF10521 DUF2454: Protein of u 51.4 97 0.0021 32.5 9.6 73 600-672 119-202 (282)
360 KOG3926 F-box proteins [Amino 50.7 8.5 0.00018 38.4 1.5 48 36-83 198-246 (332)
361 PF00790 VHS: VHS domain; Int 50.6 45 0.00097 30.6 6.2 70 429-498 43-118 (140)
362 KOG1243 Protein kinase [Genera 49.5 3.4E+02 0.0073 31.8 13.7 186 551-753 327-512 (690)
363 KOG1848 Uncharacterized conser 48.6 2.3E+02 0.0051 35.9 12.9 219 469-698 796-1029(1610)
364 KOG1822 Uncharacterized conser 47.0 8.5E+02 0.019 32.5 18.8 253 356-626 851-1124(2067)
365 KOG4579 Leucine-rich repeat (L 46.3 7.7 0.00017 35.0 0.4 60 200-263 72-133 (177)
366 KOG1991 Nuclear transport rece 45.6 6.7E+02 0.014 30.9 31.7 308 395-724 478-811 (1010)
367 PF13251 DUF4042: Domain of un 45.5 2.9E+02 0.0063 26.7 12.0 125 473-630 44-175 (182)
368 PF11707 Npa1: Ribosome 60S bi 45.5 4.2E+02 0.0091 28.5 25.0 153 430-586 58-239 (330)
369 COG5098 Chromosome condensatio 44.8 1.4E+02 0.0031 34.5 9.7 108 512-628 301-414 (1128)
370 PF00560 LRR_1: Leucine Rich R 44.5 8.7 0.00019 22.2 0.3 9 280-288 2-10 (22)
371 PF03130 HEAT_PBS: PBS lyase H 44.4 21 0.00045 22.0 2.0 26 444-479 1-26 (27)
372 KOG2933 Uncharacterized conser 44.2 2.4E+02 0.0052 29.5 10.4 139 431-581 91-231 (334)
373 PF00790 VHS: VHS domain; Int 43.1 1.1E+02 0.0024 28.0 7.5 74 599-673 41-118 (140)
374 PF12830 Nipped-B_C: Sister ch 42.4 3.3E+02 0.0071 26.4 14.6 143 382-542 11-167 (187)
375 PF08216 CTNNBL: Catenin-beta- 41.8 46 0.001 28.7 4.3 39 702-740 63-101 (108)
376 PF14663 RasGEF_N_2: Rapamycin 41.6 67 0.0015 28.3 5.6 39 686-724 9-47 (115)
377 KOG4464 Signaling protein RIC- 41.0 3.9E+02 0.0084 29.1 11.6 157 513-674 48-232 (532)
378 PF14666 RICTOR_M: Rapamycin-i 39.9 4.1E+02 0.0088 26.8 13.1 131 483-628 78-224 (226)
379 PRK09169 hypothetical protein; 39.4 1.2E+03 0.026 32.1 31.7 94 378-480 162-258 (2316)
380 PF11791 Aconitase_B_N: Aconit 39.2 43 0.00092 30.7 3.9 28 686-713 95-122 (154)
381 cd03565 VHS_Tom1 VHS domain fa 37.7 1.9E+02 0.004 26.6 8.0 70 429-498 39-115 (141)
382 smart00567 EZ_HEAT E-Z type HE 37.1 48 0.001 20.7 2.9 28 443-480 2-29 (30)
383 KOG4337 Microsomal triglycerid 36.5 7.5E+02 0.016 28.8 22.2 217 470-714 360-594 (896)
384 cd00197 VHS_ENTH_ANTH VHS, ENT 36.2 1.9E+02 0.0042 25.2 7.8 68 429-496 38-113 (115)
385 cd08050 TAF6 TATA Binding Prot 35.4 3.6E+02 0.0079 29.1 11.1 145 430-583 180-339 (343)
386 PF14663 RasGEF_N_2: Rapamycin 35.3 1.3E+02 0.0029 26.4 6.5 40 429-468 9-48 (115)
387 PF10521 DUF2454: Protein of u 35.3 5.1E+02 0.011 27.1 12.0 73 470-542 120-203 (282)
388 PF14225 MOR2-PAG1_C: Cell mor 34.9 5.3E+02 0.011 26.6 19.8 153 526-699 75-242 (262)
389 PF06685 DUF1186: Protein of u 34.9 3.9E+02 0.0085 27.3 10.4 48 421-468 104-154 (249)
390 KOG1791 Uncharacterized conser 34.4 8.1E+02 0.018 31.9 14.5 204 423-629 1434-1660(1758)
391 PF13306 LRR_5: Leucine rich r 33.8 8.3 0.00018 34.6 -1.5 100 176-287 9-112 (129)
392 PF04821 TIMELESS: Timeless pr 33.7 5.6E+02 0.012 26.5 14.6 57 429-499 14-73 (266)
393 PF12726 SEN1_N: SEN1 N termin 33.2 3.7E+02 0.008 32.7 12.0 108 382-498 444-553 (727)
394 PF08506 Cse1: Cse1; InterPro 32.8 6.9E+02 0.015 27.3 18.5 132 483-624 225-370 (370)
395 PF14631 FancD2: Fanconi anaem 32.8 1.2E+03 0.025 31.0 16.5 146 604-762 346-508 (1426)
396 PF14631 FancD2: Fanconi anaem 32.7 1.3E+03 0.028 30.5 20.9 132 608-750 443-577 (1426)
397 PF12726 SEN1_N: SEN1 N termin 31.6 3.3E+02 0.0071 33.1 11.2 141 556-714 443-585 (727)
398 PF06012 DUF908: Domain of Unk 30.9 1.9E+02 0.0042 31.1 8.2 74 660-733 238-323 (329)
399 smart00370 LRR Leucine-rich re 30.7 38 0.00082 20.3 1.6 12 253-264 2-13 (26)
400 smart00369 LRR_TYP Leucine-ric 30.7 38 0.00082 20.3 1.6 12 253-264 2-13 (26)
401 KOG0891 DNA-dependent protein 29.8 1.7E+03 0.037 31.2 17.5 258 475-758 487-765 (2341)
402 cd08050 TAF6 TATA Binding Prot 29.7 2.6E+02 0.0056 30.3 8.9 140 384-541 183-339 (343)
403 PF11864 DUF3384: Domain of un 29.7 8.7E+02 0.019 27.6 20.6 105 643-755 215-329 (464)
404 PF01603 B56: Protein phosphat 29.2 8.2E+02 0.018 27.2 12.9 74 467-542 131-204 (409)
405 PF06012 DUF908: Domain of Unk 28.9 2.6E+02 0.0055 30.1 8.7 67 484-550 237-305 (329)
406 cd03572 ENTH_epsin_related ENT 27.0 2.2E+02 0.0047 25.4 6.3 68 429-496 39-117 (122)
407 cd03565 VHS_Tom1 VHS domain fa 26.8 5E+02 0.011 23.8 9.9 75 599-673 37-115 (141)
408 KOG1949 Uncharacterized conser 26.2 1.1E+03 0.025 27.8 17.3 183 513-714 177-370 (1005)
409 PF12054 DUF3535: Domain of un 25.9 2.7E+02 0.006 31.3 8.5 228 615-861 102-340 (441)
410 KOG2073 SAP family cell cycle 25.9 5.8E+02 0.013 31.2 11.3 62 548-609 184-248 (838)
411 KOG2676 Uncharacterized conser 25.8 53 0.0011 34.5 2.6 63 447-509 375-441 (478)
412 PF11229 DUF3028: Protein of u 25.7 1E+03 0.022 27.0 14.7 238 511-763 98-360 (589)
413 PF04499 SAPS: SIT4 phosphatas 25.5 4.2E+02 0.0091 30.1 9.8 37 548-584 56-92 (475)
414 PF13001 Ecm29: Proteasome sta 25.2 5.5E+02 0.012 29.5 11.0 173 524-714 248-443 (501)
415 PF03382 DUF285: Mycoplasma pr 24.9 38 0.00082 30.1 1.2 62 171-235 28-93 (120)
416 KOG3735 Tropomodulin and leiom 24.9 1.7E+02 0.0037 30.9 6.0 85 192-277 185-279 (353)
417 KOG2199 Signal transducing ada 24.8 2.5E+02 0.0055 30.2 7.2 71 428-498 45-118 (462)
418 KOG2549 Transcription initiati 23.8 1.1E+03 0.025 26.9 13.2 145 430-583 209-369 (576)
419 PF08389 Xpo1: Exportin 1-like 23.3 4.6E+02 0.01 23.7 8.5 108 382-493 29-148 (148)
420 TIGR00117 acnB aconitate hydra 22.2 2.5E+02 0.0053 34.0 7.3 43 444-498 82-126 (844)
421 KOG4231 Intracellular membrane 22.1 93 0.002 34.4 3.6 71 556-629 329-399 (763)
422 COG5656 SXM1 Importin, protein 21.7 1.4E+03 0.031 27.3 20.1 133 427-564 407-552 (970)
423 PF07539 DRIM: Down-regulated 21.6 4.5E+02 0.0097 24.2 7.5 32 425-456 14-45 (141)
424 PF06685 DUF1186: Protein of u 21.0 9.1E+02 0.02 24.7 14.0 82 423-509 68-154 (249)
425 smart00365 LRR_SD22 Leucine-ri 20.7 78 0.0017 19.4 1.6 13 253-265 2-14 (26)
426 KOG0413 Uncharacterized conser 20.3 4.9E+02 0.011 31.9 8.9 128 395-544 947-1075(1529)
427 KOG2502 Tub family proteins [G 20.2 57 0.0012 34.3 1.6 49 38-86 43-103 (355)
428 PF04821 TIMELESS: Timeless pr 20.1 4.6E+02 0.0099 27.2 8.2 58 381-457 15-72 (266)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=369.27 Aligned_cols=475 Identities=24% Similarity=0.244 Sum_probs=369.6
Q ss_pred CCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccC--CCCcccchhhHHHHHHcCCHHHHHHHHccC---CHH
Q 002459 369 PQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN--DENASIDCGRAEAVMKDGGIRLLLDLAKSW---REG 443 (919)
Q Consensus 369 ~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~ 443 (919)
+.....+...++||.|+++|++++++.++.|+.+|.+|+... +++ +...++..|++|.|+.+|+++ +..
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~------~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV------GSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh------hhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 334455556666999999999999999999999999999764 221 224466899999999999986 344
Q ss_pred HHHHHHHHHHHhhcChHHH-HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhc
Q 002459 444 LQSEAAKAIANLSVNAKVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFK 521 (919)
Q Consensus 444 ~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~ 521 (919)
++..++.+|.+|+..++++ ..+++.|+++.++.+|+++++.++..|+.+|.+++.+ ++.+..+++.|++|.|+++|++
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence 6778899999999966554 6678999999999999999999999999999888876 6789999999999999999963
Q ss_pred cCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCC--------chHHHHHHHHHHHHHhcCCCC----
Q 002459 522 WSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCK--------FEGVQEQAARALANLAAHGDS---- 588 (919)
Q Consensus 522 ~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~--------~~~~~~~a~~~L~~L~~~~~~---- 588 (919)
..++.+++.|+++|.+|+.+ ++.+..+++.|+++.|+.++..++ +..++++|.++|.|++.+...
T Consensus 243 --g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~ 320 (2102)
T PLN03200 243 --GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILY 320 (2102)
T ss_pred --CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence 35568999999999999986 578899999999999999998543 234688999999998873100
Q ss_pred -------C-----------------------C------------------------------------------cccchh
Q 002459 589 -------N-----------------------S------------------------------------------NNSAVG 596 (919)
Q Consensus 589 -------~-----------------------~------------------------------------------~~~~~~ 596 (919)
. . ..+..+
T Consensus 321 L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L 400 (2102)
T PLN03200 321 LGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL 400 (2102)
T ss_pred HHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH
Confidence 0 0 000112
Q ss_pred hccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-
Q 002459 597 QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS- 674 (919)
Q Consensus 597 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~- 674 (919)
.+.++++.|+.++...+.++++.++++|++|+.+ .+.+..+.+.|+++.|+++|.+ +++..|+.|+++|.+++..
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~n 477 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEV 477 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCC
Confidence 2345566677777777888999999999999977 6669999999999999999997 8899999999999999974
Q ss_pred cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHH-HHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459 675 EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR-IVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (919)
Q Consensus 675 ~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~-l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 753 (919)
++++..+.+.|++++|+++|.++++.+++.|+++|.|++.++++... +.+.|+++.|+++|.+++ +..|..|+++|.+
T Consensus 478 denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~n 556 (2102)
T PLN03200 478 DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTK 556 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999987665555 447899999999999885 8899999999999
Q ss_pred hhCCC-CchhHhhccccccccceechhHHHHh------------------hHHHHHHHHHhc--CChhHHHHHHhcccch
Q 002459 754 MFDGR-MDEFALIGTSTESTSKCVSLDGARRM------------------ALKHIEAFVLTF--SDPQAFATAAASSAPA 812 (919)
Q Consensus 754 l~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~i~~lv~~~--~~~~~~~~a~~ala~~ 812 (919)
+..+. .+.+..+..++......+.....+.+ ...+++.++... .++...+.|+.+++.+
T Consensus 557 Li~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 557 LVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred HHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 96433 22222222222221111111111000 112566666654 3445555555555555
Q ss_pred hhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHHHhhc
Q 002459 813 ALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFT 862 (919)
Q Consensus 813 ~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al~~~~ 862 (919)
+-++......+..+| +|++++.+|++++...+..|||||.+++
T Consensus 637 ~a~~~d~~~avv~ag-------aIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 637 FSSRQDLCESLATDE-------IINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred hcCChHHHHHHHHcC-------CHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 555555567788889 9999999999999999999999997665
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=363.36 Aligned_cols=461 Identities=24% Similarity=0.238 Sum_probs=362.4
Q ss_pred HHHHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc
Q 002459 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (919)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~ 438 (919)
-.+..++.........+...++||.|+++|+++++..|.+|+.+|.+++.++.+ .+..+++.|+||.|+++|+
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-------~~~aVIeaGaVP~LV~LL~ 241 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-------SISKVLDAGAVKQLLKLLG 241 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-------HHHHHHHCCCHHHHHHHHc
Confidence 345566655554445556777899999999999999999999999998866443 4678899999999999998
Q ss_pred cC-CHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCC---------HHHHHHHHHHHHhhccCccc-----
Q 002459 439 SW-REGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMN---------RLVAEEAAGGLWNLSVGEEH----- 502 (919)
Q Consensus 439 ~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~---------~~~~~~a~~~L~~Ls~~~~~----- 502 (919)
++ ++.+|..|+++|.+|+. +++++..+++.||++.|++++.+++ ..+++.|+++|.||+.+...
T Consensus 242 sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L 321 (2102)
T PLN03200 242 QGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYL 321 (2102)
T ss_pred cCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHH
Confidence 74 66999999999999998 7899999999999999999998654 34689999999998884100
Q ss_pred -------H--H------------------------------------------------------------------HHH
Q 002459 503 -------K--G------------------------------------------------------------------AIA 507 (919)
Q Consensus 503 -------~--~------------------------------------------------------------------~i~ 507 (919)
+ . .+.
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~ 401 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLN 401 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Confidence 0 0 011
Q ss_pred HhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
+.|+++.|+.++. ..+.+++..++++|++|+.+ ++.++.+.+.|+++.|+.+|.+++ ...++.++++|.+++..
T Consensus 402 ~~daik~LV~LL~---~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~- 476 (2102)
T PLN03200 402 HAEAKKVLVGLIT---MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDE- 476 (2102)
T ss_pred hccchhhhhhhhc---cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC-
Confidence 1223333333442 24567889999999999976 567789999999999999999886 89999999999999975
Q ss_pred CCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
+++++..+.+.|+++.|+++|.+++..+++.|+++|.|++.++++ +..+.+.|++++|+++|++ ++++.++.|+
T Consensus 477 --ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s---gd~~~q~~Aa 551 (2102)
T PLN03200 477 --VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN---GGPKGQEIAA 551 (2102)
T ss_pred --CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHH
Confidence 556778888999999999999999999999999999999998766 4455578999999999998 8999999999
Q ss_pred HHHHHcccCcchh--------------------------------------hHHHhcCChHHHHHHHccCCHHHHHHHHH
Q 002459 666 GALWGLSVSEANC--------------------------------------IAIGREGGVAPLIALARSEAEDVHETAAG 707 (919)
Q Consensus 666 ~~L~~l~~~~~~~--------------------------------------~~l~~~g~v~~L~~lL~~~~~~v~~~a~~ 707 (919)
++|.++....+.. ......|+++.|+++++++++.+++.|++
T Consensus 552 ~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~ 631 (2102)
T PLN03200 552 KTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAAS 631 (2102)
T ss_pred HHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHH
Confidence 9999996321110 01124689999999999999999999999
Q ss_pred HHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhHhhccccccccceechhHHHHhhH
Q 002459 708 ALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMAL 786 (919)
Q Consensus 708 aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 786 (919)
+|.+++. +++....++..|++|+|+.+|.+++ ..++..|+++|.++..+.... +-......
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~-----------------q~~~~v~~ 693 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKEN-----------------RKVSYAAE 693 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHH-----------------HHHHHHHc
Confidence 9999987 5666788999999999999999876 778999999999998643211 00011122
Q ss_pred HHHHHHHHhc--CChhHHHHHHhcccchhhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHHHhhc
Q 002459 787 KHIEAFVLTF--SDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFT 862 (919)
Q Consensus 787 ~~i~~lv~~~--~~~~~~~~a~~ala~~~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al~~~~ 862 (919)
..|.+++..+ .+......|..|++.++... .....+.++| +|++|+++|+++++..|+.|++||.++.
T Consensus 694 GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~-------~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 694 DAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAED-------IILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcC-------cHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3688888876 44455555553333333211 2355666778 8999999999999999999999994443
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-34 Score=279.02 Aligned_cols=418 Identities=27% Similarity=0.306 Sum_probs=367.9
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
+.++..++++.++.+|..|..++++|+.... ++..+++-+++++|+..+-++..++|..++.++.+++.-++
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~e--------nk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~ 158 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNME--------NKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS 158 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccC--------CceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc
Confidence 4567777899999999999999999987644 34568889999999998888999999999999999999899
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L 540 (919)
+|..+...|++.++.++-++.+..+|.++.++|.|++...++++.++.+|++|.|+.++. +++.+++..+..++.++
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~---s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK---SGDLDVQYYCTTAISNI 235 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc---cCChhHHHHHHHHhhhh
Confidence 999999999999999988999999999999999999999999999999999999999994 59999999999999999
Q ss_pred hcCCcchHHHHhcC--hHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHH
Q 002459 541 AADDKCSMEVALAG--GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618 (919)
Q Consensus 541 ~~~~~~~~~l~~~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 618 (919)
+-+...++.+++.+ .++.|+.++.+++ +.++-.|.-+|+++++ ..+.+..+.+.|.+|.++++++++.-....
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlas----dt~Yq~eiv~ag~lP~lv~Llqs~~~plil 310 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLAS----DTEYQREIVEAGSLPLLVELLQSPMGPLIL 310 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcc----cchhhhHHHhcCCchHHHHHHhCcchhHHH
Confidence 99999999999987 9999999999987 8899999999999998 466777888999999999999998888888
Q ss_pred HHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CcchhhHHHhcCChHHHHHHHccC
Q 002459 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSE 697 (919)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~-~~~~~~~l~~~g~v~~L~~lL~~~ 697 (919)
..+.++.|++.++-+...++++|.+.+|+++|.. ..++++|..|..+|+|++. ++.++..|.+.|+++.+..++.++
T Consensus 311 asVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 311 ASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG 388 (550)
T ss_pred HHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC
Confidence 8899999999999999999999999999999986 4677799999999999998 588999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhHhhccccccccceec
Q 002459 698 AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVS 777 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~~v~ 777 (919)
...++.....++..|+.+...+..+.+.|.+|.|+.+..+. +.++|-.|+.||.|++.+..+..+.
T Consensus 389 pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~Yarv------------- 454 (550)
T KOG4224|consen 389 PVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARV------------- 454 (550)
T ss_pred ChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHH-------------
Confidence 99999999999999999999999999999999999999876 4889999999999998654322110
Q ss_pred hhHHHHhhHHHHHHHHHhcCChhHHHHHHhcccchhhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHH
Q 002459 778 LDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFA 857 (919)
Q Consensus 778 ~~~~~~~~~~~i~~lv~~~~~~~~~~~a~~ala~~~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~a 857 (919)
++ +++.+. .| .-++|++|+.+....++..|.|.
T Consensus 455 -----------iE----------------------awd~P~-------~g-------i~g~L~Rfl~S~~~tf~hia~wT 487 (550)
T KOG4224|consen 455 -----------IE----------------------AWDHPV-------QG-------IQGRLARFLASHELTFRHIARWT 487 (550)
T ss_pred -----------HH----------------------HhcCcc-------hh-------HHHHHHHHHhhhHHHHHHHHHHH
Confidence 11 111110 13 55788999999999999999999
Q ss_pred HHhhccCCccchhhhhhhhhhhc
Q 002459 858 LLQFTIPGGRHAMHHASLMQGAG 880 (919)
Q Consensus 858 l~~~~~~~~~~~~~~~~~~~~~~ 880 (919)
+.++ -++|-.+..++.|+..
T Consensus 488 I~qL---le~h~~~~~~~i~~~d 507 (550)
T KOG4224|consen 488 IQQL---LEDHDLPLTAFIQSSD 507 (550)
T ss_pred HHHH---HHhCCccHHHHHhCch
Confidence 8888 3555566666777654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=274.60 Aligned_cols=370 Identities=25% Similarity=0.295 Sum_probs=331.6
Q ss_pred ChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHH
Q 002459 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAK 450 (919)
Q Consensus 371 ~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~ 450 (919)
.+..+..-.|..+|+.-+.++..++|..+..|+.+|+..++ ++..+...|++.++.++-++.+..+|+.+..
T Consensus 118 nk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~--------nk~kiA~sGaL~pltrLakskdirvqrnatg 189 (550)
T KOG4224|consen 118 NKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS--------NKVKIARSGALEPLTRLAKSKDIRVQRNATG 189 (550)
T ss_pred CceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc--------chhhhhhccchhhhHhhcccchhhHHHHHHH
Confidence 33344456777777766667778899999999999997644 4678999999999999888999999999999
Q ss_pred HHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhc--CHHHHHHHHhccCCCCHH
Q 002459 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKWSSGGDG 528 (919)
Q Consensus 451 ~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~ 528 (919)
+|.+|....++|+.++..||+|.|+.++++.|..+|++++.++.|++.+..+++.+++.+ .++.|++++. ++++.
T Consensus 190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd---~~s~k 266 (550)
T KOG4224|consen 190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD---DGSDK 266 (550)
T ss_pred HHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh---CCChH
Confidence 999999999999999999999999999999999999999999999999999999999998 8999999996 48899
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH
Q 002459 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (919)
Q Consensus 529 ~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~l 608 (919)
++-.|..+|.+++.+++.+..+++.|.+|.++++++++. -........+++|++.+ +-+...+.+.|.+.+|+.+
T Consensus 267 vkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnisih----plNe~lI~dagfl~pLVrl 341 (550)
T KOG4224|consen 267 VKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNISIH----PLNEVLIADAGFLRPLVRL 341 (550)
T ss_pred HHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcccc----cCcccceecccchhHHHHH
Confidence 999999999999999999999999999999999999876 44556677889999985 5667788899999999999
Q ss_pred hCCC-CHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCC
Q 002459 609 TRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGG 686 (919)
Q Consensus 609 L~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~ 686 (919)
|..+ +++++.+|...|+||+.. ..++..+.+.|+|+.++.++.+ ++..+|+...+++..++.++..+..+.+.|.
T Consensus 342 L~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~Lal~d~~k~~lld~gi 418 (550)
T KOG4224|consen 342 LRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQLALNDNDKEALLDSGI 418 (550)
T ss_pred HhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHHHHhccccHHHHhhcCC
Confidence 9876 556999999999999984 7779999999999999999998 8999999999999999999999999999999
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHH------cCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCc
Q 002459 687 VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE------EGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (919)
Q Consensus 687 v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~------~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 760 (919)
++.|+....+.+.+++.+|+.+|.|++.+.++..++++ .|.-..|+.++.+++ -+.+..|.|++.++..+...
T Consensus 419 ~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~-~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 419 IPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE-LTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999888886 344567888888775 78999999999988876543
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.5e-29 Score=268.55 Aligned_cols=374 Identities=24% Similarity=0.226 Sum_probs=314.3
Q ss_pred hhcCCCChhHHHHhhcHHHHHHhhc-cCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHH
Q 002459 365 AESNPQGLDDFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443 (919)
Q Consensus 365 ~~~~~~~~~~~~~~~gi~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~ 443 (919)
.+.+|+.-.. .+.|.||.+|..|. ..++.+|..|+++|.+++.++.++ -..++++|++|.++.++.++++.
T Consensus 96 ~~~~ppi~~v-i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~-------T~~vv~agavp~fi~Ll~s~~~~ 167 (514)
T KOG0166|consen 96 KERNPPIDEV-IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ-------TKVVVDAGAVPIFIQLLSSPSAD 167 (514)
T ss_pred cCCCCCHHHH-HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-------ccccccCCchHHHHHHhcCCcHH
Confidence 3566655554 55566999999995 566999999999999999987765 34689999999999999999999
Q ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCH-HHHHHHHHHHHhhccCcc-cHHHHHHhcCHHHHHHHHh
Q 002459 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 444 ~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~L~~lL~ 520 (919)
++.+|+++|+|++. .+..|..+.+.|++++|+.++...+. ...+.++++|.|++.+.. ....-.-..++|.|..++.
T Consensus 168 v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~ 247 (514)
T KOG0166|consen 168 VREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH 247 (514)
T ss_pred HHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh
Confidence 99999999999998 78999999999999999999988765 788999999999999763 2222233457899999995
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcCC-cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhcc
Q 002459 521 KWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (919)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~ 599 (919)
+.++++...|+|++.+|+..+ +..+.+++.|.++.|+.+|...+ ..++..|++++.|++.+ ++..-..++..
T Consensus 248 ---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG---~d~QTq~vi~~ 320 (514)
T KOG0166|consen 248 ---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTG---SDEQTQVVINS 320 (514)
T ss_pred ---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeec---cHHHHHHHHhc
Confidence 589999999999999999654 56678889999999999999887 77889999999999987 45556677899
Q ss_pred chHHHHHHHhC-CCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--c
Q 002459 600 GALEALVQLTR-SPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--E 675 (919)
Q Consensus 600 ~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~--~ 675 (919)
|+++.|..++. +....++..|+|++.|++.. .+..+.+++.|.+|.|+.++++ ++.++|..|+|++.|++.+ +
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~---~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT---AEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc---cchHHHHHHHHHHHhhcccCCH
Confidence 99999999998 45666999999999999887 4468899999999999999998 8899999999999999975 4
Q ss_pred chhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC------C---cccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 676 ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF------N---PGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 676 ~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~------~---~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
+.-..+++.|.+++|..+|.-.+..+...++.+|.++-. . ......+-+.||+..+-.+-.+. +..+...
T Consensus 398 ~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he-n~~Iy~~ 476 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE-NEEIYKK 476 (514)
T ss_pred HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc-cHHHHHH
Confidence 555788899999999999988899999999999999854 1 22234555788888776665555 4788888
Q ss_pred HHHHHHHhhCC
Q 002459 747 AALALAYMFDG 757 (919)
Q Consensus 747 A~~~L~~l~~~ 757 (919)
|-..+.....+
T Consensus 477 A~~II~~yf~~ 487 (514)
T KOG0166|consen 477 AYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHhcCC
Confidence 88888755544
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=261.37 Aligned_cols=359 Identities=22% Similarity=0.246 Sum_probs=306.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc-C
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-N 458 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~ 458 (919)
.+..+..+.+++++.+..+...+..+...+.. + ....+...|.++.+|+.|.. .++.++..|+|+|-|++. +
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-----p-pi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN-----P-PIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-----C-CHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc
Confidence 57788888889999999999999998876553 1 34556667999999999975 579999999999999998 8
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
.+.-+.+++.|++|.+++++.+++..+++.|+++|+|++.+. ..|..+.+.|++++|+.++.. .......+.+.|+|
T Consensus 142 se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 142 SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTL 219 (514)
T ss_pred hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHH
Confidence 888899999999999999999999999999999999999985 778888899999999999974 23347889999999
Q ss_pred HHhhcCCcchHHHHh-cChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHH
Q 002459 538 ANLAADDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 616 (919)
.||+...+....+.. ..+++.|..++.+.+ +++...|+|++.+|+.++ .+.-..+++.|+++.|+.+|.+.+..+
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~---ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGS---NEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC---hHHHHHHHHccchHHHHHHHcCCCccc
Confidence 999987654433333 467999999999886 999999999999999773 344556779999999999999999999
Q ss_pred HHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHH
Q 002459 617 RQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALA 694 (919)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL 694 (919)
+..|++++.|++...+. .+.++..|+++.|..++.. +....++..|+|++.|++.. .+..+++.+.|.+|.|+++|
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999999888555 7788899999999999985 25666999999999999975 56778999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 695 RSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 695 ~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
++++-+++..|++|+.|++. .++.-..+++.|.|+.+..+|.-.+ ..+-..+..++.++
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D-~~ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD-VKIILVALDGLENI 434 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC-hHHHHHHHHHHHHH
Confidence 99999999999999999987 4556667889999999999996555 44455565666554
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=3.1e-29 Score=243.96 Aligned_cols=370 Identities=22% Similarity=0.212 Sum_probs=308.4
Q ss_pred hcCCCChhHHHHhhcHHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHH
Q 002459 366 ESNPQGLDDFWLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGL 444 (919)
Q Consensus 366 ~~~~~~~~~~~~~~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~ 444 (919)
|.+|+...+ +..|.+|.++++| .....-.+..|+++|.+++.+..... ..++++|++|.++++|.+++.++
T Consensus 102 E~~PPIq~V-IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-------kvVvd~~AVPlfiqlL~s~~~~V 173 (526)
T COG5064 102 ETSPPIQPV-IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-------KVVVDAGAVPLFIQLLSSTEDDV 173 (526)
T ss_pred ccCCCchhH-HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-------EEEEeCCchHHHHHHHcCchHHH
Confidence 556655554 7777799999999 55666778999999999998877643 34789999999999999999999
Q ss_pred HHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcC--CHHHHHHHHHHHHhhccCc---ccHHHHHHhcCHHHHHHH
Q 002459 445 QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGE---EHKGAIADAGGVKALVDL 518 (919)
Q Consensus 445 ~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~L~~l 518 (919)
+.+++|+|+|++. ++..|..+.+.|++++++.++.+. +..+.+.+.++|.||+.+. +.-..|.+ ++|.|.++
T Consensus 174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KL 251 (526)
T COG5064 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKL 251 (526)
T ss_pred HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHH
Confidence 9999999999998 678999999999999999999875 4578899999999999963 34444443 68999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCC-cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 002459 519 IFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (919)
Q Consensus 519 L~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 597 (919)
+. +.++++...|+|++.+|+..+ +....+.+.|..+.|+++|.+++ ..++..+++.+.|+..+. +..-..++
T Consensus 252 iy---s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~---D~QTqviI 324 (526)
T COG5064 252 IY---SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGS---DDQTQVII 324 (526)
T ss_pred Hh---hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecC---ccceehhe
Confidence 96 489999999999999999865 45578899999999999999876 788999999999999874 34456778
Q ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--
Q 002459 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-- 674 (919)
Q Consensus 598 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-- 674 (919)
..|+++.+..+|.++.+.+|..|||.+.|++.. .+..+.+++.+.+|+|+.+|.+ .+..++..|+|++.|....
T Consensus 325 ~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~---ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 325 NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS---AEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH---HHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999876 5668889999999999999998 8999999999999999853
Q ss_pred --cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-----------CcccHHHHHH-cCCHHHHHHHHhcCCC
Q 002459 675 --EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-----------NPGNALRIVE-EGGVPALVHLCSSSGS 740 (919)
Q Consensus 675 --~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-----------~~~~~~~l~~-~~~i~~Lv~ll~~~~~ 740 (919)
++.-..+++.|.+++|..+|.-.+..+.+.++.++.|+-. ++......++ +|++..+-.+-.+.+
T Consensus 402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n- 480 (526)
T COG5064 402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVN- 480 (526)
T ss_pred CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccc-
Confidence 5666788999999999999988777777777777777643 1222234444 888888888777765
Q ss_pred HHHHHHHHHHHHHhhC
Q 002459 741 KMARFMAALALAYMFD 756 (919)
Q Consensus 741 ~~~~~~A~~~L~~l~~ 756 (919)
..+-..|-..+.....
T Consensus 481 ~~iy~KAYsIIe~fFg 496 (526)
T COG5064 481 RTIYDKAYSIIEKFFG 496 (526)
T ss_pred cHHHHHHHHHHHHHcc
Confidence 6677777777665543
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.5e-27 Score=232.26 Aligned_cols=360 Identities=19% Similarity=0.194 Sum_probs=297.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc-C
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-N 458 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~ 458 (919)
.|.|.+-|.++|-+.|..|..-...+...... .-...++++|.+|.+++++++ ...-.+..|+|+|-|++. .
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~------PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETS------PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccC------CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 57888888888888888888777766644332 235678999999999999954 566678899999999988 5
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
.+-.+.+++.|++|.++++|.+++..+++.++++|+|++.++ ..|..+.+.|++++++.++.+ ...+-.+.+.+.|+|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s-s~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh-ccchHHHHHHhHHHH
Confidence 566677889999999999999999999999999999999986 577788899999999999975 445568999999999
Q ss_pred HHhhcCCcchH-HHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHH
Q 002459 538 ANLAADDKCSM-EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (919)
Q Consensus 538 ~~L~~~~~~~~-~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 616 (919)
.||+....... .-.-...++.|.+++.+.+ +++...|+|++.+|+..+ .+.-..+.+.|....|+.+|.+++..+
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KLiys~D-~evlvDA~WAiSYlsDg~---~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYLSDGP---NEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhccCc---HHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 99998543221 1111346888999998876 999999999999999763 344456678999999999999999999
Q ss_pred HHHHHHHHHhhcCCcc-cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHH
Q 002459 617 RQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALA 694 (919)
Q Consensus 617 ~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL 694 (919)
+..|++.+.|+....+ ..+.++..|+++.+..+|.+ +...++..|+|++.|++.. .+..+++.+.+.+|+|+++|
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 9999999999987744 46778899999999999987 7789999999999999865 67778999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCc----ccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 695 RSEAEDVHETAAGALWNLAFNP----GNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 695 ~~~~~~v~~~a~~aL~~l~~~~----~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.+.+-.++..|++|+.|.+.+. +.-..+++.|.|.+|..+|.-.++. +-+.+..++.++-
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniL 442 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENIL 442 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHH
Confidence 9999999999999999998744 3445667899999999999877644 3444566665543
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=248.95 Aligned_cols=306 Identities=23% Similarity=0.298 Sum_probs=258.4
Q ss_pred CcCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccccccCCCC--CCHHHHHHHHHhCC-CccEEEecCCcc
Q 002459 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHK--CDIAMAASLASRCM-NLQKLRFRGAES 115 (919)
Q Consensus 39 ~~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~l~l~~~~--~~~~~l~~l~~~~~-~L~~L~l~~~~~ 115 (919)
.--.||+|++..||++|+.+.+++++++|+.|+..+.+...|+++|+..+. ++..++..+.++|. .|++|.++||..
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~ 150 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRA 150 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccccccc
Confidence 345699999999999999999999999999999999999999999998755 45668888888887 699999999966
Q ss_pred ch----HHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 002459 116 AD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD 191 (919)
Q Consensus 116 ~~----~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 191 (919)
.. ..+...||++++|.+.+|.++||..+..+.+.|++|++|+|. .|..+++..++.++.+||+|++|+++.|+.
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 43 234458999999999999999999999999999999999996 599999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH----hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeecc-CCC
Q 002459 192 ICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT-DVG 266 (919)
Q Consensus 192 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l----~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~-~i~ 266 (919)
+++.+++.+.+.|.+++.+.+.||....++.+ ..++-+..+++..|..+||.++..+..+|..|+.|+.+++ +++
T Consensus 229 i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 229 ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 99999999999999999999999999999877 3678888999999999999999999999999999999996 899
Q ss_pred HHHHHHHHhcCcccceecccccCCccchhHHHHHhhhhhh---hhhhccchHH-HHHHhhhccccccccccccccccCCc
Q 002459 267 PITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKL---LLALFTDIFK-ALASLFAETTKNEKNVFLDWRNSKNK 342 (919)
Q Consensus 267 ~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l---~l~~~~~~~~-~~~~l~~~~~~~~r~~~~~~~~l~~~ 342 (919)
+..+..+..+|++|+++.+.+|.++++.++..+..+...| .+.....+.+ ++..+...++.... ..++++
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~------lslshc 382 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV------LSLSHC 382 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc------CChhhh
Confidence 9999999999999999999999999999977666444444 3332222233 36666666555442 234455
Q ss_pred cccchhHHHH
Q 002459 343 DKNLNEIMTW 352 (919)
Q Consensus 343 ~~~~~~~~~~ 352 (919)
.-.++...+.
T Consensus 383 e~itD~gi~~ 392 (483)
T KOG4341|consen 383 ELITDEGIRH 392 (483)
T ss_pred hhhhhhhhhh
Confidence 5555554444
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-27 Score=227.23 Aligned_cols=242 Identities=26% Similarity=0.452 Sum_probs=158.0
Q ss_pred ccCcCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccccccCCCCCCHH-----------------------
Q 002459 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIA----------------------- 93 (919)
Q Consensus 37 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~l~l~~~~~~~~----------------------- 93 (919)
...|+.||||++..||+.|+.+|+.+++.|||||+++..+..+|..+|+....+.+.
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p 174 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP 174 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence 466999999999999999999999999999999999999999999888865332222
Q ss_pred --------------------------HHHHHHHhCCCccEEEecCCccchHHHHH--cCCCccEEEecCCCCCCHHHHHH
Q 002459 94 --------------------------MAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSV 145 (919)
Q Consensus 94 --------------------------~l~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~ 145 (919)
.+..+.+.|.+|+.|.+.|....|.+... ...+|+.|+++.|..++..++..
T Consensus 175 rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 175 RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH
Confidence 23444555555666666666555554322 45666666666666666666666
Q ss_pred HHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH-
Q 002459 146 IVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDCLNVDEVAL- 223 (919)
Q Consensus 146 l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l- 223 (919)
+...|..|..|+| +||...++..-..++.--++|+.|+|+||.. +.+..+..+.+.||+|.+|||++|..+++..+
T Consensus 255 l~~scs~L~~LNl--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 255 LLSSCSRLDELNL--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHhhhhHhhcCc--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 6666666666666 4666555553333444446666666666642 44455666666666666666666666666432
Q ss_pred --hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCcccce
Q 002459 224 --GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (919)
Q Consensus 224 --~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (919)
..++.|++|+++.|+.|....+..+ ...|.|.+||+.+| ++|..+.-+.+.|++|+.
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~-vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC-VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc-cCchHHHHHHHhCccccc
Confidence 3556666666666666665555444 34466666666665 444444444445555554
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=4.2e-23 Score=233.03 Aligned_cols=377 Identities=19% Similarity=0.178 Sum_probs=317.7
Q ss_pred HHHHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc
Q 002459 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (919)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~ 438 (919)
.+++.++++.. ......+.++++.|+++|++++.++...+..+|.+|+.. .+++..|.+.|++++|++++.
T Consensus 271 ~lLlNLAed~~-ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--------~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 271 YLLLNLAEDPR-VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--------KENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHhcChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCCHHHHHHHhc
Confidence 34666666654 444446666799999999999999999999999997643 457899999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHH
Q 002459 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL 518 (919)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~l 518 (919)
+++.+++..++++|.||+.+++.|..+++.|.+|.|+.+|.++ ..+..++.+|+++|.+++++..+...++++.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 9999999999999999999999999999999999999999854 45677999999999999999999999999999998
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhc
Q 002459 519 IFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598 (919)
Q Consensus 519 L~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 598 (919)
+.. .+++.+...++..+.||+.++.+.+.+.+.|+++.|+.......++ .....++|++.++ ...+..+
T Consensus 420 Ll~--~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~---~~~k~~f-- 488 (708)
T PF05804_consen 420 LLE--NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD---GPLKELF-- 488 (708)
T ss_pred HHh--CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC---chHHHHH--
Confidence 864 3555566678899999999999999999999999999987765533 2457899999873 2344444
Q ss_pred cchHHHHHHHhCCC-CHHHHHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc
Q 002459 599 AGALEALVQLTRSP-HEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~ 676 (919)
.+.+..|+..+..+ +++....++++|.||+..+.. ...+-+.+.+|.+...|.. ....+++...++..++.++.++.
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~-g~~~dDl~LE~Vi~~gtla~d~~ 567 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP-GASEDDLLLEVVILLGTLASDPE 567 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC-CCCChHHHHHHHHHHHHHHCCHH
Confidence 35788888887664 778999999999999987555 4455567999999999986 23456788899999999999999
Q ss_pred hhhHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459 677 NCIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAY 753 (919)
Q Consensus 677 ~~~~l~~~g~v~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~-~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 753 (919)
+...+.+.|.++.|+.+|.+ .|.++....+.++++|..+++.+..+++ .+++..|++++++.+ +.+|..+-.+|.-
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N-~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN-AEIRKVCDNALDI 646 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 99999999999999999965 4688999999999999999999998876 678889999999886 8899999999987
Q ss_pred hhCCCC
Q 002459 754 MFDGRM 759 (919)
Q Consensus 754 l~~~~~ 759 (919)
++....
T Consensus 647 i~e~d~ 652 (708)
T PF05804_consen 647 IAEYDE 652 (708)
T ss_pred HHHhCH
Confidence 765543
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=1e-21 Score=221.83 Aligned_cols=332 Identities=22% Similarity=0.199 Sum_probs=281.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (919)
+.+-.+++ .++.....+...|.+|+.. +.....+.+.|+++.|+++|++++.++...++.+|.+|+...++
T Consensus 253 kk~~~l~~-kQeqLlrv~~~lLlNLAed--------~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 253 KKLQTLIR-KQEQLLRVAFYLLLNLAED--------PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcC--------hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34444444 3556666788889998754 34677899999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
+..+.+.|.++.|++++.+++..++..++++|.|||.+++.|..|++.|.+|.|+.+|. ++..+..+..+|.+++
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~-----d~~~~~val~iLy~LS 398 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK-----DPNFREVALKILYNLS 398 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC-----CCchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999995 3346667999999999
Q ss_pred cCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-CCCCHHHHHHH
Q 002459 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQEA 620 (919)
Q Consensus 542 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a 620 (919)
.+++++..+...++++.+++++.+++.+.+...++..+.||+. +..+...+.+.++++.|+... +..++- .
T Consensus 399 ~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~----~~rnaqlm~~g~gL~~L~~ra~~~~D~l----L 470 (708)
T PF05804_consen 399 MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL----NKRNAQLMCEGNGLQSLMKRALKTRDPL----L 470 (708)
T ss_pred cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc----CHHHHHHHHhcCcHHHHHHHHHhcccHH----H
Confidence 9999999999999999999988876667777788899999998 567778888889999999775 333432 3
Q ss_pred HHHHHhhcCCc-ccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcch-hhHHHhcCChHHHHHHHccC-
Q 002459 621 AGALWNLSFDD-RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN-CIAIGREGGVAPLIALARSE- 697 (919)
Q Consensus 621 ~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~-~~~l~~~g~v~~L~~lL~~~- 697 (919)
.+.++|+|.++ ..+..+. +.+..|+.++.. ..+++....+.++|+|++..+.. ...+.+.+.++.|.++|..+
T Consensus 471 lKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~--~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~ 546 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFV--DFIGDLAKIVSS--GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA 546 (708)
T ss_pred HHHHHHHHhcCchHHHHHH--HHHHHHHHHhhc--CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC
Confidence 57999999997 4455554 368888888876 35889999999999999976544 44445679999999999654
Q ss_pred -CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC
Q 002459 698 -AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSG 739 (919)
Q Consensus 698 -~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~ 739 (919)
.+++...++..++.++.++.....+.+.|.++.|++++.+.+
T Consensus 547 ~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 547 SEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred CChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC
Confidence 467888999999999999999999999999999999998764
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=5.2e-21 Score=209.97 Aligned_cols=367 Identities=25% Similarity=0.262 Sum_probs=296.3
Q ss_pred HHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002459 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (919)
Q Consensus 376 ~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (919)
|+..-+|..+.||.+.++.+|.+|+..+..+++++.+ .+..+.+-|+|+.||.+|.+.+.+++.+|+++|.||
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-------ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-------IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-------HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 6666678899999999999999999999999998775 467889999999999999999999999999999999
Q ss_pred hc---ChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCC-------
Q 002459 456 SV---NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS------- 524 (919)
Q Consensus 456 ~~---~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------- 524 (919)
.+ +++++-.|.+.+||+.++++|+. .|.++++...++||||++.+..+..|+.. ++..|..-+-.+.+
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence 87 34699999999999999999987 79999999999999999997777777665 56666655432222
Q ss_pred C----CHHHHHHHHHHHHHhhc-CCcchHHHHhc-ChHHHHHHHHhc-----CCchHHHHHHHHHHHHHhcCCCCC----
Q 002459 525 G----GDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS-----CKFEGVQEQAARALANLAAHGDSN---- 589 (919)
Q Consensus 525 ~----~~~~~~~a~~~L~~L~~-~~~~~~~l~~~-g~i~~L~~ll~~-----~~~~~~~~~a~~~L~~L~~~~~~~---- 589 (919)
. +.++..++.++|.|++. .++.++++.+. |.|..|+..+.. ..+....++|...|+||+..-+..
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 1 35678899999999998 67888999886 889999988872 122455689999999997642200
Q ss_pred -------------------------Cc---------------------ccchhhccchHHHHHHHh-CCCCHHHHHHHHH
Q 002459 590 -------------------------SN---------------------NSAVGQEAGALEALVQLT-RSPHEGVRQEAAG 622 (919)
Q Consensus 590 -------------------------~~---------------------~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~ 622 (919)
.. .-..+....++..-..++ .+.+..+.+++++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 00 000112334555544444 3457889999999
Q ss_pred HHHhhcCCcc-----cHHHH-HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc
Q 002459 623 ALWNLSFDDR-----NREAI-AAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS 696 (919)
Q Consensus 623 ~L~~Ls~~~~-----~~~~l-~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~ 696 (919)
+|-||+...- .+..+ .+..+.++|+++|+. ++..+...++++|.||+.+..++..|. .++++.|++.|.+
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~---~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~ 617 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN---DDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPG 617 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc---CCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcC
Confidence 9999987621 24444 667899999999998 899999999999999999999998888 7899999999965
Q ss_pred C------CHHHHHHHHHHHHHHc-CCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 697 E------AEDVHETAAGALWNLA-FNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 697 ~------~~~v~~~a~~aL~~l~-~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
. ++++...++.+|.|+. .+..+...+.+.++++.|+.+..+..++.+-.+|...|..|
T Consensus 618 ~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 618 SGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred CCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3 3689999999999998 58999999999999999999999988777666666666544
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=204.82 Aligned_cols=364 Identities=25% Similarity=0.311 Sum_probs=286.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC---CHHHHHHHHHHHHHhhc-C
Q 002459 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW---REGLQSEAAKAIANLSV-N 458 (919)
Q Consensus 383 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~~~~~~~a~~~L~~l~~-~ 458 (919)
.|+.|+...|++.. +..+..+... ++....++..|.++.|+++|--. +.+.+..|-.+|.|+.. .
T Consensus 201 sllsml~t~D~ee~---ar~fLemSss--------~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq 269 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEEM---ARTFLEMSSS--------PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ 269 (2195)
T ss_pred HHhhhcccCCHHHH---HHHHHHhccC--------chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence 46777766665433 3333333332 23456789999999999999753 56778899999999987 4
Q ss_pred hHHHHHHHHhCcHHHHHHHH----------hc--------CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHh
Q 002459 459 AKVAKAVAEEGGINILAVLA----------RS--------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL----------~~--------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~ 520 (919)
++.+..=.+...+..|=++. .. ++..-...|+.+|..++.++|.|..|.+-|++.++.+++.
T Consensus 270 PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~ 349 (2195)
T KOG2122|consen 270 PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQ 349 (2195)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHH
Confidence 44333333333333332221 11 1222234788999999999999999999999999988874
Q ss_pred ccC---------CCCHHHHHHHHHHHHHhhcCC-cchHHHHh-cChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCC
Q 002459 521 KWS---------SGGDGVLERAAGALANLAADD-KCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (919)
Q Consensus 521 ~~~---------~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 589 (919)
-.+ ...-.+++.|..+|.||...+ .++..+.. .|++..+|..|.+.. +++....+.+|+||+|..|.
T Consensus 350 vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~- 427 (2195)
T KOG2122|consen 350 VDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADS- 427 (2195)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccc-
Confidence 211 112368899999999999865 56766665 499999999999876 78889999999999998764
Q ss_pred CcccchhhccchHHHHHHH-hCCCCHHHHHHHHHHHHhhcCC-cccHHHHHH-cCCHHHHHHHHhh-cCCCCHHHHHHHH
Q 002459 590 SNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFD-DRNREAIAA-AGGVEALVVLAQS-CSNASPGLQERAA 665 (919)
Q Consensus 590 ~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~-~g~i~~Lv~ll~~-~~~~~~~~~~~A~ 665 (919)
..++.+.+.|-+..|+.. ++...+......+.+||||+.+ .+|+..|.. .|++..|+.+|.. +....-.+.+.|-
T Consensus 428 -nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG 506 (2195)
T KOG2122|consen 428 -NMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG 506 (2195)
T ss_pred -cHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence 457888899999999876 6777778888999999999998 678888877 4899999999975 1124567899999
Q ss_pred HHHHHccc----CcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCC
Q 002459 666 GALWGLSV----SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGS 740 (919)
Q Consensus 666 ~~L~~l~~----~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~ 740 (919)
++|.|++. .+++|+.+.++.++..|++.|++..-.|+.+++++||||.. +++.++.+++.|+|+.|..++++.+
T Consensus 507 GILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh- 585 (2195)
T KOG2122|consen 507 GILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH- 585 (2195)
T ss_pred cHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-
Confidence 99999874 58899999999999999999999999999999999999965 9999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhCCCCch
Q 002459 741 KMARFMAALALAYMFDGRMDE 761 (919)
Q Consensus 741 ~~~~~~A~~~L~~l~~~~~~~ 761 (919)
.++-.-++.+|.|+...++..
T Consensus 586 kMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 586 KMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhHHHHHHHHhcCCchh
Confidence 888899999999998877544
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=4.4e-19 Score=194.95 Aligned_cols=321 Identities=26% Similarity=0.297 Sum_probs=257.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc---ccHHH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE---EHKGA 505 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~ 505 (919)
++..+.+|.+.++.+|..|+..+..+++ +.+.|..+.+.|||+.|+.++++.+.+++..|+++|.||.... +|+-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 5678899999999999999999999998 8899999999999999999999999999999999999999964 68999
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcC--------C-----chHHH
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC--------K-----FEGVQ 572 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~--------~-----~~~~~ 572 (919)
|.+.++|+.++++++ ...+.++++.+.++||||+..+..+..++... +..|..-+-.+ . +.++.
T Consensus 315 i~~~~Gv~~l~~~Lr--~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLR--HTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhcCChHHHHHHHH--hhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999998 46899999999999999999977777666543 44444433211 1 24566
Q ss_pred HHHHHHHHHHhcCCCCCCcccchh-hccchHHHHHHHhCC------CCHHHHHHHHHHHHhhcCCcc-------------
Q 002459 573 EQAARALANLAAHGDSNSNNSAVG-QEAGALEALVQLTRS------PHEGVRQEAAGALWNLSFDDR------------- 632 (919)
Q Consensus 573 ~~a~~~L~~L~~~~~~~~~~~~~~-~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~~~~------------- 632 (919)
.++.++|+|+++.+ .+.++.+ ...|.|+.|+..+++ .+....++|+.+|.||+..-+
T Consensus 392 ~n~tgcLRNlSs~~---~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAG---QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred ehhhhhhccccchh---HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 79999999999863 3344444 467899999988763 366778999999999987422
Q ss_pred -------------------cHHH----------------------HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 002459 633 -------------------NREA----------------------IAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (919)
Q Consensus 633 -------------------~~~~----------------------l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l 671 (919)
-... +....+|.+-..++.. ..++.+.++++++|-|+
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQNL 546 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhhh
Confidence 0001 0001134444555553 37889999999999999
Q ss_pred ccC-----cchhhHH-HhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCC-----
Q 002459 672 SVS-----EANCIAI-GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGS----- 740 (919)
Q Consensus 672 ~~~-----~~~~~~l-~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~----- 740 (919)
+.. ...+..+ .++.++++|+++|+.+++.|...++.+|.||+.++.++..+. .++++.|++.|..+..
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCch
Confidence 853 2344444 788999999999999999999999999999999999998888 7999999999988765
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 002459 741 KMARFMAALALAYMFDGRM 759 (919)
Q Consensus 741 ~~~~~~A~~~L~~l~~~~~ 759 (919)
+++-..++.+|.++...++
T Consensus 626 edtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred HHHHHHHHHhHHHHHHHhH
Confidence 6677777888888875554
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.82 E-value=2.2e-18 Score=195.74 Aligned_cols=382 Identities=23% Similarity=0.240 Sum_probs=284.5
Q ss_pred cCCCChhHHHHhhcHHHHHHhhcc---CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHH-------
Q 002459 367 SNPQGLDDFWLKQGAGLLLSLMQS---TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL------- 436 (919)
Q Consensus 367 ~~~~~~~~~~~~~gi~~Lv~lL~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~l------- 436 (919)
.+++.+-.+.+.+.+++|+++|.- ++.+.+..|-.+|.++.....+.. ..+..+.--..++.+...
T Consensus 223 ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k----r~RRE~kvL~lLeQIraYC~~~~~~ 298 (2195)
T KOG2122|consen 223 SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK----RGRREKKVLHLLEQIRAYCETCWTW 298 (2195)
T ss_pred cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555569999999953 346788999999999998766531 122222111222222221
Q ss_pred HccC-------CHHHH-HHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc------------CCHHHHHHHHHHHHhh
Q 002459 437 AKSW-------REGLQ-SEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS------------MNRLVAEEAAGGLWNL 496 (919)
Q Consensus 437 L~~~-------~~~~~-~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~------------~~~~~~~~a~~~L~~L 496 (919)
+... ..+-+ ..|+.+|..++++++.|..+-+.||++++-+++.- .+..+|.+|..+|.||
T Consensus 299 lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNL 378 (2195)
T KOG2122|consen 299 LQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNL 378 (2195)
T ss_pred HHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcc
Confidence 2211 11223 37889999999999999999999999999988742 1456899999999999
Q ss_pred ccCc-ccHHHHH-HhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc-c-hHHHHhcChHHHHHHHHhcCCchHHH
Q 002459 497 SVGE-EHKGAIA-DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQ 572 (919)
Q Consensus 497 s~~~-~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~-~-~~~l~~~g~i~~L~~ll~~~~~~~~~ 572 (919)
+.++ .|+..++ ..|.+..+|..|. +..+++....+.+|.||++..+ + +..+.+.|-+..|.........+...
T Consensus 379 TFGDv~NKa~LCs~rgfMeavVAQL~---s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTL 455 (2195)
T KOG2122|consen 379 TFGDVANKATLCSQRGFMEAVVAQLI---SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTL 455 (2195)
T ss_pred ccccccchhhhhhhhhHHHHHHHHHh---cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchH
Confidence 9976 6777777 5688999999995 4778999999999999998643 4 45666779999999876655546778
Q ss_pred HHHHHHHHHHhcCCCCCCcccchhh-ccchHHHHHHHhCCC----CHHHHHHHHHHHHhhcCC----cccHHHHHHcCCH
Q 002459 573 EQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRSP----HEGVRQEAAGALWNLSFD----DRNREAIAAAGGV 643 (919)
Q Consensus 573 ~~a~~~L~~L~~~~~~~~~~~~~~~-~~~~i~~Lv~lL~~~----~~~~~~~a~~~L~~Ls~~----~~~~~~l~~~g~i 643 (919)
...+.+|+||+.+ +.+|+..+. -.|++..|+.+|..+ .-.+.+.|-++|.|.+.. ++.|+.+.+++++
T Consensus 456 KavLSALWNLSAH---cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCL 532 (2195)
T KOG2122|consen 456 KAVLSALWNLSAH---CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCL 532 (2195)
T ss_pred HHHHHHHhhhhhc---ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHH
Confidence 8999999999998 667777766 468999999999754 456888999999998764 5669999999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccc-CcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHH-
Q 002459 644 EALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR- 721 (919)
Q Consensus 644 ~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~- 721 (919)
..|++.|++ .+-.+..+++++||||+. +++.++.+++.|+++.|.+++++.+..+.+.++.+|.||..+...+..
T Consensus 533 q~LLQ~LKS---~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq~~ 609 (2195)
T KOG2122|consen 533 QTLLQHLKS---HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQAS 609 (2195)
T ss_pred HHHHHHhhh---cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhhhh
Confidence 999999998 888999999999999985 588899999999999999999999999999999999999886643322
Q ss_pred --HHHcC-CHHHHH---HHHhcCCCHHHHHHHHHHHHHhhCCCCchhH
Q 002459 722 --IVEEG-GVPALV---HLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 722 --l~~~~-~i~~Lv---~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
+...| .++.|- +..... ..-....+.++.++..++.+..+
T Consensus 610 ~~~~~~g~svgsL~vrKqkale~--eL~~rhsa~a~~~l~t~~L~s~R 655 (2195)
T KOG2122|consen 610 HRLMSPGSSVGSLAVRKQKALEA--ELDARHSAEALDNLDTGSLDSLR 655 (2195)
T ss_pred hcccCccccccchhhhHHhhhcc--chhhhHHHHHhccCCCCCccccc
Confidence 22111 122221 111111 22344556677777766655443
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.81 E-value=3.3e-17 Score=165.58 Aligned_cols=482 Identities=18% Similarity=0.134 Sum_probs=337.2
Q ss_pred HHHHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc
Q 002459 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (919)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~ 438 (919)
..++..+..|.+.... +..+|| ...+..+...+..++...+....+. .......+++++++.|.+...
T Consensus 30 ~~~qa~a~~nt~t~ek-~~~~~i-------~~~~~tv~~~qssC~A~~sk~ev~r----~~F~~~~I~a~~le~Lrq~ps 97 (604)
T KOG4500|consen 30 CLLQALAQNNTETSEK-IQASGI-------MTASDTVYLFQSSCLADRSKNEVER----SLFRNYCIDAEALELLRQTPS 97 (604)
T ss_pred HHHHhHhhhChhhHHH-HHhcce-------eeccchhhhhhHHHHHHHhhhHHHH----HHHHHHhhHHHHHHHHHhCCC
Confidence 3455566677766666 444442 2233445555666666655332211 112222467899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc----C---CHHHHHHHHHHHHhhccC-cccHHHHHHh
Q 002459 439 SWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS----M---NRLVAEEAAGGLWNLSVG-EEHKGAIADA 509 (919)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~----~---~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~ 509 (919)
|++.++-.++.++|+|++. ++++|..+.+.||-+.+++.|+. . +.+....+.+.|.|-.-+ ++.+.+..+.
T Consensus 98 S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~ 177 (604)
T KOG4500|consen 98 SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADA 177 (604)
T ss_pred CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhc
Confidence 9999999999999999988 88999999999998888888764 2 346667778888888876 5788999999
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC--CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCC
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~ 587 (919)
|.++.|...+.- +-.+....+.......||..- +.......+......+++++.....++..+.+...|+..+.
T Consensus 178 gVl~tL~~~~~I-~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae--- 253 (604)
T KOG4500|consen 178 GVLNTLAITYWI-DWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE--- 253 (604)
T ss_pred ccHHHHHHHhhc-ccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc---
Confidence 999999988754 446677777777777777652 22344555667788888888877668888889999999987
Q ss_pred CCCcccchhhccchHHHHHHHhCC-CC-------HHHHHHHHHHHHhhcCCcccHHHHHHcC-CHHHHHHHHhhcCCCCH
Q 002459 588 SNSNNSAVGQEAGALEALVQLTRS-PH-------EGVRQEAAGALWNLSFDDRNREAIAAAG-GVEALVVLAQSCSNASP 658 (919)
Q Consensus 588 ~~~~~~~~~~~~~~i~~Lv~lL~~-~~-------~~~~~~a~~~L~~Ls~~~~~~~~l~~~g-~i~~Lv~ll~~~~~~~~ 658 (919)
++..+-.+.+.|.++.++++++. ++ -.....++....-+...++.-.++...+ .++.++..+.+ .+.
T Consensus 254 -nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S---~d~ 329 (604)
T KOG4500|consen 254 -NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS---DDS 329 (604)
T ss_pred -CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC---Cch
Confidence 56778888899999999998865 21 1233345666666666666655565554 77888888877 888
Q ss_pred HHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc-----CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHH
Q 002459 659 GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS-----EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVH 733 (919)
Q Consensus 659 ~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ 733 (919)
..+..+.-+++|++..+.++..+++.|.+..|+..|.. ++.+++++++.||+|+..+..|+..++..|.++.++.
T Consensus 330 ~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~ 409 (604)
T KOG4500|consen 330 NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL 409 (604)
T ss_pred hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHH
Confidence 99999999999999999999999999999999999943 5678999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhCCCCchhHhhccccccccceechhHHHHhhHHHHHHHHHhcCChhHHHHHHhcccc-h
Q 002459 734 LCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAP-A 812 (919)
Q Consensus 734 ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~lv~~~~~~~~~~~a~~ala~-~ 812 (919)
.++... |.+...-..+++-+.++...... .+.+++. -+..++.....+.-...+....-. .
T Consensus 410 ~lk~~~-ppv~fkllgTlrM~~d~qe~~a~---eL~kn~~--------------l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 410 QLKLAS-PPVTFKLLGTLRMIRDSQEYIAC---ELAKNPE--------------LFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred HHHhcC-CcchHHHHHHHHHHHhchHHHHH---HHhcCHH--------------HHHHHHHhhhCCccchhhhhhhHHHH
Confidence 999886 55777777777765554431110 0111110 123333322111110000000000 0
Q ss_pred hhHHhhH----hhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHHHhh-----ccCCcc-chhhhhhhhhhhchH
Q 002459 813 ALTQVTE----RARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQF-----TIPGGR-HAMHHASLMQGAGAA 882 (919)
Q Consensus 813 ~~~~~~~----~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al~~~-----~~~~~~-~~~~~~~~~~~~~~~ 882 (919)
.+-..+. ...+...| +|..+|.++....-..+..|..|+... ..|+.+ .+...+.++-+.|.+
T Consensus 472 ~lIkHs~~kdv~~tvpksg-------~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~ 544 (604)
T KOG4500|consen 472 GLIKHSKYKDVILTVPKSG-------GIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYA 544 (604)
T ss_pred HHHHhhHhhhhHhhccccc-------cHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhh
Confidence 1111111 24556778 789999999999999999999888433 344444 445667777777755
Q ss_pred HHH
Q 002459 883 RVL 885 (919)
Q Consensus 883 ~~~ 885 (919)
.+.
T Consensus 545 ~~~ 547 (604)
T KOG4500|consen 545 NVA 547 (604)
T ss_pred hhh
Confidence 543
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.80 E-value=5.9e-20 Score=186.26 Aligned_cols=248 Identities=21% Similarity=0.274 Sum_probs=172.8
Q ss_pred cCcCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccccccCCCCCCHHHHHHHHHhCCCccEEEecCCccch
Q 002459 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD 117 (919)
Q Consensus 38 ~~~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 117 (919)
..|..| ++...+ +++......++.+|+.|+.+...++ ..+++..+..+..-|++|++|+++.|....
T Consensus 164 pnIehL--~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c---------~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 164 PNIEHL--ALYGCK--KITDSSLLSLARYCRKLRHLNLHSC---------SSITDVSLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred Cchhhh--hhhcce--eccHHHHHHHHHhcchhhhhhhccc---------chhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence 445555 333333 6667777799999999998887773 234566777889999999999998886543
Q ss_pred H----HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 002459 118 S----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC 193 (919)
Q Consensus 118 ~----~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~ 193 (919)
. .+...|.+++.+.+.+|....++.+..+...|+-+.++++ ..|+.++|.++..++.+|..|+.|..++|..++
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl--~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL--QHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch--hhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 2 2333566677776777777777777777777777777776 357777777777777777777777777777777
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCCCHHHH----hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeecc-CCCHH
Q 002459 194 GDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT-DVGPI 268 (919)
Q Consensus 194 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l----~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~-~i~~~ 268 (919)
+..+..+.++|++|+.|.+++|..++|.++ .+++.|+.|++.+|..++|..+.++..+||.|+.|.+++| .++|+
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 777777777777777777777777777665 3567777777777777777767777777777777777776 46666
Q ss_pred HHHHHHh---cCcccceecccccCCccchhHHHHH
Q 002459 269 TISRLLT---SSKSLKVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 269 ~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~ 300 (919)
++..+-. +...|..+.+++|+.+++..+..+.
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 6655543 3466667777777777766644444
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.2e-15 Score=149.82 Aligned_cols=321 Identities=16% Similarity=0.186 Sum_probs=258.7
Q ss_pred HHcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhcc-
Q 002459 425 MKDGGIRLLLDLAK---SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSV- 498 (919)
Q Consensus 425 ~~~g~l~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~- 498 (919)
...|+.+.++.++. +++..+-..++.+|..+.. ....+.+..|...++.+|.. ++.++.......+..-+.
T Consensus 101 ~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~---~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 101 GKNGAHDALITLLELAESPNESVLKKSLEAINSLTH---KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred ccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhc---CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45677777766654 4677777788888887775 23456677899999999854 566677666666766665
Q ss_pred CcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcch----------HHHHhcChHHHHHHHHhcCCc
Q 002459 499 GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS----------MEVALAGGVHALVMLARSCKF 568 (919)
Q Consensus 499 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~----------~~l~~~g~i~~L~~ll~~~~~ 568 (919)
++.|++.+.+.+..+.+...+.. .+...+.+...++++.|..+++.+ +.++..|+...|++.+.-.-+
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~--~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNR--EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcc--cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 57899999999999999988864 344468888999999999887653 467888999999999998777
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-CHHHH---HHHHHHHHhhcCCcccHHHHHHcCCHH
Q 002459 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVR---QEAAGALWNLSFDDRNREAIAAAGGVE 644 (919)
Q Consensus 569 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~---~~a~~~L~~Ls~~~~~~~~l~~~g~i~ 644 (919)
|++....+.+|..|+. ..+..+.+.+.|++..|+.++.+. +.+.| ..++..|+.|+.+++++..|++.|+.+
T Consensus 256 p~~L~~l~~tl~~lAV----r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~ 331 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAV----RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLD 331 (461)
T ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChH
Confidence 9999999999999998 567788889999999999999874 33444 568899999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccc-CcchhhHHHhcCChHHHHHHHccCC--HHHHHHHHHHHHHHcCCcccHHH
Q 002459 645 ALVVLAQSCSNASPGLQERAAGALWGLSV-SEANCIAIGREGGVAPLIALARSEA--EDVHETAAGALWNLAFNPGNALR 721 (919)
Q Consensus 645 ~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~-~~~~~~~l~~~g~v~~L~~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~ 721 (919)
.++.++.. +..+|.+.+.++.+++-++. ++++...+++.|+-...++.++..+ ..++++|++.++|++....+...
T Consensus 332 ~ii~l~~~-h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~ 410 (461)
T KOG4199|consen 332 KIITLALR-HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT 410 (461)
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999876 56899999999999999995 5888899999999999999997544 56999999999999875544444
Q ss_pred HHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 722 IVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 722 l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
++=..|++.|+..-.+.+ +..+..|..||+.+.-
T Consensus 411 ~~l~~GiE~Li~~A~~~h-~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 411 ILLANGIEKLIRTAKANH-ETCEAAAKAALRDLGC 444 (461)
T ss_pred hHHhccHHHHHHHHHhcC-ccHHHHHHHHHHhcCc
Confidence 444577888888777665 7788888888987653
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.5e-15 Score=145.19 Aligned_cols=314 Identities=17% Similarity=0.193 Sum_probs=260.1
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhc-ChHHHHHH
Q 002459 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSV-NAKVAKAV 465 (919)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~~~~a~~~L~~l~~-~~~~~~~i 465 (919)
.+++..+-.++..+|..+..+.+ .+.++.++..++++|.. ++.++-......+..-+. ++.+|+.+
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp-----------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~ 185 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP-----------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLF 185 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc-----------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56777888889999998886544 37888999999999864 677888888888888666 88999999
Q ss_pred HHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcc----------cHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 466 AEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEE----------HKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 466 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~----------~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
.+.+.++.+.+.|.. +...+.+.+.+++.-|..+++ ..+.|.+.|+...|++.+.. .-++++...+.
T Consensus 186 m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A--~~dp~~L~~l~ 263 (461)
T KOG4199|consen 186 MELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA--GIDPDSLVSLS 263 (461)
T ss_pred HHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc--cCCccHHHHHH
Confidence 999999999987765 444577788889999988764 35778889999999999985 34578889999
Q ss_pred HHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHH---HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh--
Q 002459 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQ---EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-- 609 (919)
Q Consensus 535 ~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~---~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-- 609 (919)
.+|..|+-.++.+..+.+.|++..|+.++.+++..+.+ ..++..|+.|+- ++.++..+++.|+.+.++.++
T Consensus 264 ~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 264 TTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999987656555 467888888886 466788999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 610 RSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 610 ~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
.+++|.+.+.++.++.-|+-- +++-..+++.|+-...++.++. ++....+|.+|++++.|+.....+...++-..|++
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka-hP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE 418 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA-HPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE 418 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence 456888999999999888776 7778889999999999999987 55667899999999999997644433444456789
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCcccHH
Q 002459 689 PLIALARSEAEDVHETAAGALWNLAFNPGNAL 720 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 720 (919)
.|+..-...++.+...|-.+|+.|..+..+++
T Consensus 419 ~Li~~A~~~h~tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 419 KLIRTAKANHETCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred HHHHHHHhcCccHHHHHHHHHHhcCcchhhHH
Confidence 99999999999999999999999987665553
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.67 E-value=2.2e-14 Score=145.43 Aligned_cols=363 Identities=18% Similarity=0.118 Sum_probs=278.7
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc----C---CHHHHHHHHHHH
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----W---REGLQSEAAKAI 452 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~----~---~~~~~~~a~~~L 452 (919)
.++.|.+..++++.++-+++.++|+++|+.++++ +..+.+.|+-..+++.|+. + +++.-..+...|
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~-------R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l 160 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNEN-------RAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVL 160 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchh-------HHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHH
Confidence 3677888778888999999999999999987764 7789999998888888774 2 235556678888
Q ss_pred HHhhc-ChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccC--cccHHHHHHhcCHHHHHHHHhccCCCCH
Q 002459 453 ANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGD 527 (919)
Q Consensus 453 ~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 527 (919)
.|... +++.+.++.+.|.++.|...+.- .+....+.......|+.+- +...+...+......+++++.. .-.+
T Consensus 161 ~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~--~v~~ 238 (604)
T KOG4500|consen 161 HNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPS--MVRE 238 (604)
T ss_pred HHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHH--hhcc
Confidence 89776 88999999999999999988753 5667777777666776663 2234444556667778888863 4667
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCch-------HHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 002459 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFE-------GVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~-------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 600 (919)
+..+....+|...+.++..+-.+++.|.+..++.+++.-.+. .....++....-+..++ +..+.......
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD---eSMq~L~~~p~ 315 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD---ESMQKLHADPQ 315 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc---hHHHHHhcCcH
Confidence 788999999999999999999999999999999999862211 12223444444444442 22344445556
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhh--cCCCCHHHHHHHHHHHHHcccCcchh
Q 002459 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS--CSNASPGLQERAAGALWGLSVSEANC 678 (919)
Q Consensus 601 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~~~~A~~~L~~l~~~~~~~ 678 (919)
.++.++..+.+.+.+....++-++.|+++.++++..+++.+.+..|++++.. .-.++.+.|.+++.+|.|+..+..++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 8999999999999999999999999999999999999999999999999864 12367889999999999999999999
Q ss_pred hHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcc-cHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG-NALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 679 ~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~-~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
..+..+|..+.++..++...|.+...-++.|+-+....+ ....+.+ ..-+..|++..++++-.-+--.+-..|.-+
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL 473 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence 999999999999999999999999999998888765443 2222332 234777888877766443444444444433
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.59 E-value=3.3e-12 Score=144.34 Aligned_cols=342 Identities=16% Similarity=0.140 Sum_probs=263.0
Q ss_pred hhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 002459 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (919)
Q Consensus 378 ~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (919)
.+..+.|...|.++++.++..++..|.++....+ .....+.+.+.++.++..+.+++.++...|+.+|.+++.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~-------~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE-------GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH-------HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 3446889999999999999999999999875443 235567889999999999999999999999999999999
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (919)
.+...+.+...+.+..|..++...+..+|.++..++.+++.. ++....+.+.|.++.++..+. ++|.-++..++.+
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalel 225 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALEL 225 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHH
Confidence 887888888888899999999888999999999999999875 567777778899999999995 3777889999999
Q ss_pred HHHhhcCCcchHHHHhcChHHHHHHHHhcCCchH----HH-HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC
Q 002459 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEG----VQ-EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (919)
Q Consensus 537 L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~----~~-~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~ 611 (919)
|..|+..+.+...+.+.|+++.|..++.+..... +. ........+++... +. ...-.-...+..+..++.+
T Consensus 226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--~~--~v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 226 LSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--PQ--EVLELYPAFLERLFSMLES 301 (503)
T ss_pred HHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--hH--HHHHHHHHHHHHHHHHhCC
Confidence 9999998899999999999999999998653222 11 23346667777631 11 1111124556677778888
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHH-HHcC-CHHHHHHHHhh-cCCCCHHHHHHHHHHHHHccc--Ccch-------h-
Q 002459 612 PHEGVRQEAAGALWNLSFDDRNREAI-AAAG-GVEALVVLAQS-CSNASPGLQERAAGALWGLSV--SEAN-------C- 678 (919)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~~~~~~l-~~~g-~i~~Lv~ll~~-~~~~~~~~~~~A~~~L~~l~~--~~~~-------~- 678 (919)
.|+..+..|..++..++...+++..+ ...+ .++..+..... ..++..++|..+..++.++-. .+.. .
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 99999999999999999999888888 4433 33333333321 123778999999999999943 2211 1
Q ss_pred hHHH--hcCChH-HHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCC-HHHHHH
Q 002459 679 IAIG--REGGVA-PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGG-VPALVH 733 (919)
Q Consensus 679 ~~l~--~~g~v~-~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~-i~~Lv~ 733 (919)
.++- ..+... .++.+++.+=++++..+...|..++.++.....+...++ ++.|++
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 1111 123334 677788777799999999999999999988888776444 444444
No 23
>PRK09687 putative lyase; Provisional
Probab=99.57 E-value=7.2e-13 Score=136.97 Aligned_cols=257 Identities=18% Similarity=0.067 Sum_probs=204.1
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHH
Q 002459 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI 506 (919)
Q Consensus 427 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 506 (919)
.-.++.|+..|.+++..++..|+.+|..+.... .++.+..++.++++.+|..|+++|+.+...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~----------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGGQD----------VFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch----------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 345789999999999999999999999887432 578888999999999999999999999864322
Q ss_pred HHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
....++.|..++. .+.++.++..|+.+|+++....... ....+..+...+.+.+ +.++..++.+|..+..
T Consensus 88 -~~~a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 -QDNVFNILNNLAL--EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND-- 157 (280)
T ss_pred -hHHHHHHHHHHHh--cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC--
Confidence 2235677777754 4578899999999999996433211 1124556667777775 8999999999976542
Q ss_pred CCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 002459 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAG 666 (919)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~ 666 (919)
..+++.|+.++.++++.+|..|+.+|..+..+.+ .+++.|+.++.+ .++.++..|+.
T Consensus 158 ------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 158 ------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred ------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcC---CChHHHHHHHH
Confidence 4689999999999999999999999999843322 357889999987 89999999999
Q ss_pred HHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 667 ALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 667 ~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
+|+.+.. ..++++|++.|.+++ ++..++.+|.++.. ..++|.|.+++....++.++..
T Consensus 215 aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~ 272 (280)
T PRK09687 215 GLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITK 272 (280)
T ss_pred HHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHH
Confidence 9988543 248899999999866 67789999999873 3689999999985557889999
Q ss_pred HHHHHH
Q 002459 747 AALALA 752 (919)
Q Consensus 747 A~~~L~ 752 (919)
|.++|.
T Consensus 273 a~~a~~ 278 (280)
T PRK09687 273 AIDKLK 278 (280)
T ss_pred HHHHHh
Confidence 998874
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=4e-12 Score=130.78 Aligned_cols=349 Identities=16% Similarity=0.103 Sum_probs=268.5
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCc
Q 002459 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (919)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~ 470 (919)
.+++.-..|...|.+++.... .-..++..+.+..||+.|..++.+.-......|..++--.+++..+.+.|.
T Consensus 275 KQeqLLrva~ylLlNlAed~~--------~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~i 346 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDIS--------VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGI 346 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccH
Confidence 455666678888888885433 345688899999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l 550 (919)
+..|+++....+++++...+..|.|++.+..++.+|+..|.+|.|..++. ++.-...|+..+..++.+++.+..+
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~-----~d~~~~iA~~~lYh~S~dD~~K~Mf 421 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD-----SDTKHGIALNMLYHLSCDDDAKAMF 421 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC-----CcccchhhhhhhhhhccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 3445566889999999999999888
Q ss_pred HhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHH------------------------
Q 002459 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV------------------------ 606 (919)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv------------------------ 606 (919)
.-..+++.+...+-++.+.++-......--|++. +..+...+.+..++..|+
T Consensus 422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l----nkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~ 497 (791)
T KOG1222|consen 422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL----NKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGA 497 (791)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh----ccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccch
Confidence 8889999999887766555554444333346666 344444444444444433
Q ss_pred -------------HHhCCC-CHHHHHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 002459 607 -------------QLTRSP-HEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (919)
Q Consensus 607 -------------~lL~~~-~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l 671 (919)
..+... ++..-..+.+++.||...+-. ...+-+...+|-+-..|+.+ ....+++....-+++.+
T Consensus 498 tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg-a~eddLvL~~vi~~GT~ 576 (791)
T KOG1222|consen 498 TQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG-ADEDDLVLQIVIACGTM 576 (791)
T ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC-ccchhhhhHHHHHhhhh
Confidence 222222 344556677777777765443 44445567778777777753 23455777778888888
Q ss_pred ccCcchhhHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHHHcCCcccHHHHHHcCC-HHHHHHHHhcCCCHHHHHHHH
Q 002459 672 SVSEANCIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVEEGG-VPALVHLCSSSGSKMARFMAA 748 (919)
Q Consensus 672 ~~~~~~~~~l~~~g~v~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~-i~~Lv~ll~~~~~~~~~~~A~ 748 (919)
+....+...+..+|.++.|+.+|+. .+.+.....+.+...+..+...+..++++.. -.-|++++++.+ ..+|...-
T Consensus 577 a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN-~eiRkVCD 655 (791)
T KOG1222|consen 577 ARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKN-AEIRKVCD 655 (791)
T ss_pred hhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhccc-HHHHHHHH
Confidence 8888888888999999999999975 4567777888888888888888888887655 456789998876 78888887
Q ss_pred HHHHHhhCCC
Q 002459 749 LALAYMFDGR 758 (919)
Q Consensus 749 ~~L~~l~~~~ 758 (919)
.+|--++...
T Consensus 656 n~LdIiae~d 665 (791)
T KOG1222|consen 656 NALDIIAEHD 665 (791)
T ss_pred HHHHHHHHhh
Confidence 7777665443
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.57 E-value=4.8e-12 Score=145.96 Aligned_cols=578 Identities=17% Similarity=0.129 Sum_probs=277.8
Q ss_pred cccccCCCCCCHHHHHHHHHhCCCccEEEecCCccchH------------HHHH-----cCCCccEEEecCCCCCCHHHH
Q 002459 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS------------IIHL-----QARNLRELSGDYCRKITDATL 143 (919)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~------------~~~~-----~~~~L~~L~l~~c~~~~~~~l 143 (919)
..++|.........+..+.+.+ |++|.+.+...... ++.. .-.+|++|++++-..+...-.
T Consensus 63 tki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~ 140 (699)
T KOG3665|consen 63 TKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP 140 (699)
T ss_pred EEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence 5566666656666666665553 77777755422111 1100 224677777766555555555
Q ss_pred HHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---
Q 002459 144 SVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--- 220 (919)
Q Consensus 144 ~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--- 220 (919)
..+...+|+|++|.+. ...+..+.+..++.++|+|.+|+++++ ++++- .-.+++++|+.|.+.+-..-+.
T Consensus 141 ~kig~~LPsL~sL~i~---~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVIS---GRQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred HHHhhhCcccceEEec---CceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCchhhH
Confidence 5666667777777773 223444446666666777777777766 44332 1122336666666665322221
Q ss_pred HHHhCCCCCCEEeecCCCCCCHHHH----HHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCcccceecccccCCccchhH
Q 002459 221 VALGNVLSVRFLSVAGTSNMKWGVV----SQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (919)
Q Consensus 221 ~~l~~~~~L~~L~l~~c~~i~~~~l----~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 296 (919)
..+.++++|+.||+|.-....+.-+ .+....+|+|+.||.|+++++.+.+..+...-|+|+.+.+.+|........
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~ 293 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAVSS 293 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccccc
Confidence 2345667777777776544443311 112234677777777777777777777777777777777666543222220
Q ss_pred HHHHhhhhhhhhhhccchHHHHHHhhhccccccccccccccccCCccccchhHHHHHHHHHHHHHHHhhhcCCCChhHHH
Q 002459 297 ISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFW 376 (919)
Q Consensus 297 ~~~~~~~~~l~l~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 376 (919)
. ...-+..+........+.+.... +| .....+-+..+..+.-. . +....+.
T Consensus 294 ~----~i~~ln~at~~s~i~~L~~~~~l----~r---------------~~~v~~cl~~l~~~~~~----~--~~~~~~~ 344 (699)
T KOG3665|consen 294 T----EIRVLNTATLDSSIQALTYYLNL----KR---------------PSEVSRCLNELLDLLKS----L--DSTREYD 344 (699)
T ss_pred c----CceeeeecchhHHHHHHHHHHHh----cC---------------hHHHHHHHHHHHHHHHH----h--hhhhhhh
Confidence 0 00111111111111122211111 10 12222222222222111 1 1112223
Q ss_pred HhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 377 ~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
....+..+++.|+......+.....+|..++.......+. ..-.-.++.|+..... .+.+.......+.+-.
T Consensus 345 ~~~~l~~i~~sm~~~~s~~~i~~~~CL~~i~~~~~~~l~~-------~~~~~~l~~LLn~v~~-~~~~~~~~~~~~~~~i 416 (699)
T KOG3665|consen 345 ISECLKLIINSMNTFSSSNQIQGSACLIHIVKHTKQRLSP-------LLVSLLLKVLLNLVEK-LDTLDSNDELTLCNSI 416 (699)
T ss_pred HHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHhhhhccCh-------HHHHHHHHHHHHhhhc-ccccccchhHHHHHHH
Confidence 3334566777775444477777788898888665422111 1111222233333221 1111111111111100
Q ss_pred ----cChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCc---ccHHHHHHhcCHHHHHHHHhccCCCCHH
Q 002459 457 ----VNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE---EHKGAIADAGGVKALVDLIFKWSSGGDG 528 (919)
Q Consensus 457 ----~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 528 (919)
.....+.. ....+.. ....++..+...+.+..... .......+.+.+..+...+.. ......
T Consensus 417 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 486 (699)
T KOG3665|consen 417 ILLLSLLVSRRK---------LLSVLDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKL-RKIYWC 486 (699)
T ss_pred HHHHHHHHHHHH---------HhhccchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHh-hccchh
Confidence 00000000 0000000 11112222222222222110 001111112222222211111 112222
Q ss_pred HHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH--HH
Q 002459 529 VLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE--AL 605 (919)
Q Consensus 529 ~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~--~L 605 (919)
....-..+|++.... ++.+..+.+.|++..+...+..-+..+.+..+.+.+.+++... +.+........+. .+
T Consensus 487 ~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~----~~~~~~~~~~~~~~~~f 562 (699)
T KOG3665|consen 487 DDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVL----ELRELLMIFEFIDFSVF 562 (699)
T ss_pred hHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHH
Confidence 222222388888864 5788999999999999999996666889999999999999753 2222222222222 22
Q ss_pred HHHhCCCCH-HHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhc
Q 002459 606 VQLTRSPHE-GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGRE 684 (919)
Q Consensus 606 v~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~ 684 (919)
-.++...+. +.-..|+.+|..+..+.+. ..+.+ ..+.+.+.-..++..+... .....-.
T Consensus 563 ~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~~~~--------------~r~~~~~~l~e~i~~~~~~---~~~~~~~ 622 (699)
T KOG3665|consen 563 KVLLNKWDSIERSYNAASILALLLSDSEK---TTECV--------------FRNSVNELLVEAISRWLTS---EIRVIND 622 (699)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHhCCCc---Ccccc--------------chHHHHHHHHHHhhccCcc---ceeehhh
Confidence 234444444 6777788888887666332 10100 1112222222222222221 1112222
Q ss_pred CChHH-HHHHHc-cCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcC
Q 002459 685 GGVAP-LIALAR-SEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSS 738 (919)
Q Consensus 685 g~v~~-L~~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~ 738 (919)
....+ +.+++. +..+..+.+|++++.++.. ++++...+.+.++++.+.++-...
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLS 679 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhH
Confidence 23333 555554 4567889999999999987 677888888999999888776544
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.8e-13 Score=135.87 Aligned_cols=346 Identities=18% Similarity=0.148 Sum_probs=260.4
Q ss_pred HHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC
Q 002459 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW 440 (919)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 440 (919)
++.+++.-...... .+..-+..||+.|..++.+........|.+|+.-+ +++..+.+.|.++.|+++....
T Consensus 287 LlNlAed~~~ElKM-rrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--------eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 287 LLNLAEDISVELKM-RRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--------ENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHhhhhhHHHHH-HHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--------cchHHHHhccHHHHHHHhcCCC
Confidence 55666665533332 33344799999998888888888999999876543 3678899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHh
Q 002459 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~ 520 (919)
+++.+...+..|.|++.+...|..++..|-+|.++.++.++.. ..-|+..|+.++.++..+..+....+|+.+++.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986432 34578899999999999999999999999998775
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc-----------------------------C--------hHHHHHHHH
Q 002459 521 KWSSGGDGVLERAAGALANLAADDKCSMEVALA-----------------------------G--------GVHALVMLA 563 (919)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~-----------------------------g--------~i~~L~~ll 563 (919)
. ..+.++-........|++.+..+.+.+.+- | .+..|...+
T Consensus 436 ~--~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~ 513 (791)
T KOG1222|consen 436 S--GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIA 513 (791)
T ss_pred h--cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 3 223333333333334555433322221111 1 133344444
Q ss_pred hcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC--CHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 002459 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQEAAGALWNLSFDDRNREAIAAAG 641 (919)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g 641 (919)
...+++..-..|.++|+||... .-+-...+.+...+|.+-..|..+ ..++....+-++..++.+..+...+..+|
T Consensus 514 ~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~ 590 (791)
T KOG1222|consen 514 KNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK 590 (791)
T ss_pred hcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc
Confidence 4445556667888888888864 234456777889999998888764 44577778888899999999988999999
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcC-ChHHHHHHHccCCHHHHHHHHHHHHHHcCCc-ccH
Q 002459 642 GVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREG-GVAPLIALARSEAEDVHETAAGALWNLAFNP-GNA 719 (919)
Q Consensus 642 ~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g-~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~ 719 (919)
.|+.|+++|+.+ ..+.+.......+...+...+..+..+.+.. .-..|+.++++.+.++|+.+-.+|--++.+. ++.
T Consensus 591 ~i~tlieLL~a~-QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 591 LIDTLIELLQAC-QEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred cHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999984 4566777777778888877877777777654 4456899999999999999999999998744 555
Q ss_pred HHHH
Q 002459 720 LRIV 723 (919)
Q Consensus 720 ~~l~ 723 (919)
.++.
T Consensus 670 KrI~ 673 (791)
T KOG1222|consen 670 KRIA 673 (791)
T ss_pred HHHh
Confidence 5554
No 27
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=6.9e-13 Score=133.56 Aligned_cols=200 Identities=21% Similarity=0.194 Sum_probs=174.2
Q ss_pred ChhHHHHhhcHHHHHHhhc-cCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHH
Q 002459 371 GLDDFWLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (919)
Q Consensus 371 ~~~~~~~~~gi~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~ 449 (919)
..+.+|..+.++.|+.+|+ +.+|.+++.+..++++.+.. +.++..+.+.|+++.+..+|.++++.++..|+
T Consensus 4 ~~~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf--------~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL 75 (254)
T PF04826_consen 4 KHKNILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF--------PFNQDIIRDLGGISLIGSLLNDPNPSVREKAL 75 (254)
T ss_pred cccCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHH
Confidence 3344677788899999995 67899999999999997653 44688999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCH
Q 002459 450 KAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (919)
Q Consensus 450 ~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 527 (919)
.+|.|++.+.+++..+-. .++.+++...+ -+..++..++++|.||+..++.+..+.. .++.++.+|. .++.
T Consensus 76 ~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~~ 148 (254)
T PF04826_consen 76 NALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGSE 148 (254)
T ss_pred HHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCCh
Confidence 999999999999988753 47777775544 3788999999999999999888888754 6999999996 4888
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
.++..++.+|.||+.++...+.+...+++..++.++....+.++...++....|+..+
T Consensus 149 ~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 149 KTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887788899999999999764
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.55 E-value=8.1e-12 Score=141.26 Aligned_cols=352 Identities=15% Similarity=0.093 Sum_probs=265.5
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHH
Q 002459 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKV 461 (919)
Q Consensus 383 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~ 461 (919)
.+...|++.+.+....++.+|..+.....- .....+..+.|...|.++++.+|..+++.|+++.. ++..
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~----------~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~ 111 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSP----------DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA 111 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 366777777777777888888887753221 12267888899999999999999999999999988 4455
Q ss_pred HHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
...+.+.+.++.++..+.+++..+...|+.+|.+++..+.....+...+.+..|..++.+ .++.++..+..++.+++
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ---SSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc---cCHHHHHHHHHHHHHHH
Confidence 666777888999999999999999999999999999998888888888889999999963 57788999999999998
Q ss_pred cC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC--CH---H
Q 002459 542 AD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HE---G 615 (919)
Q Consensus 542 ~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~---~ 615 (919)
.. ++....+.+.|.++.++..+.+ +|.-++.+++..|..|+. .+.....+.+.|+++.|..++... ++ .
T Consensus 189 ~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 189 SHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred hcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 64 5566777788999999999998 458899999999999998 355677888999999999999664 22 1
Q ss_pred HH-HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHH-Hhc-CChH----
Q 002459 616 VR-QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAI-GRE-GGVA---- 688 (919)
Q Consensus 616 ~~-~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l-~~~-g~v~---- 688 (919)
+. ....+...+++...+....-.-...+..+.+++.+ .++..+..|..+++.++.+.+.+..+ ... +.++
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~ 340 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLK 340 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHH
Confidence 12 22346667777642221111111234445555555 89999999999999999998888888 433 3334
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCccc--HH---HH-------HHcCCHH-HHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 689 PLIALARSEAEDVHETAAGALWNLAFNPGN--AL---RI-------VEEGGVP-ALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~---~l-------~~~~~i~-~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.+-....++..+++..++.+|.++-..+.. -. .+ ...+... .+..+++.+= |++|.+|-..|..++
T Consensus 341 ~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF-~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 341 AIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPF-PELRCAAYRLLQALA 419 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCc-hHHHHHHHHHHHHHh
Confidence 444445667789999999999999442221 11 11 1233344 6777776653 789999999888776
Q ss_pred C
Q 002459 756 D 756 (919)
Q Consensus 756 ~ 756 (919)
.
T Consensus 420 ~ 420 (503)
T PF10508_consen 420 A 420 (503)
T ss_pred c
Confidence 4
No 29
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=1e-12 Score=135.92 Aligned_cols=253 Identities=17% Similarity=0.072 Sum_probs=200.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
++.|...|.+++..++..|+.+|..+- +...++.+..+++++++.+|..|+++|+.+...+.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~------------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG------------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC------------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 678999999999999999999998732 34556788999999999999999999999976332
Q ss_pred HHHHHHHhCcHHHHHHH-HhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (919)
. ....++.|..+ ++++++.|+..|+.+|+++....... ...+++.+...+. +.+..++..++.+|..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAF---DKSTNVRFAVAFALSV 154 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhh---CCCHHHHHHHHHHHhc
Confidence 1 12256777777 67789999999999999997543211 1113445656664 4688999999999976
Q ss_pred hhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHH
Q 002459 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (919)
Q Consensus 540 L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 619 (919)
+. +...++.|+.++.+.+ +.++..|+.+|..+... ...+++.|+.++.+.++.+|..
T Consensus 155 ~~----------~~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~------------~~~~~~~L~~~L~D~~~~VR~~ 211 (280)
T PRK09687 155 IN----------DEAAIPLLINLLKDPN-GDVRNWAAFALNSNKYD------------NPDIREAFVAMLQDKNEEIRIE 211 (280)
T ss_pred cC----------CHHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCC------------CHHHHHHHHHHhcCCChHHHHH
Confidence 64 2347899999999876 78999999999998431 2467899999999999999999
Q ss_pred HHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc-cCC
Q 002459 620 AAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEA 698 (919)
Q Consensus 620 a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~-~~~ 698 (919)
|+.+|..+... .+++.|++.+.+ ++ ++..|+.+|+++... .+++.|.+++. +++
T Consensus 212 A~~aLg~~~~~----------~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d 266 (280)
T PRK09687 212 AIIGLALRKDK----------RVLSVLIKELKK---GT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHHccCCh----------hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCC
Confidence 99999886532 478999999986 44 677899999887653 37899999996 789
Q ss_pred HHHHHHHHHHHHH
Q 002459 699 EDVHETAAGALWN 711 (919)
Q Consensus 699 ~~v~~~a~~aL~~ 711 (919)
+.++..|.++|..
T Consensus 267 ~~v~~~a~~a~~~ 279 (280)
T PRK09687 267 NEIITKAIDKLKR 279 (280)
T ss_pred hhHHHHHHHHHhc
Confidence 9999999988753
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.54 E-value=3.5e-12 Score=154.87 Aligned_cols=274 Identities=23% Similarity=0.152 Sum_probs=219.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
++.|+.+|++++++++..|+..|..+ ...++++.|+.+|+++++.+|..|+.+|..+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~------------------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTET------------------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhh------------------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-
Confidence 67899999999999999999999973 23467889999999999999999999998885321
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L 540 (919)
...+.|...|.++++.+|..|+.+|..+... ....|+..|. +.++.++..|+.+|..+
T Consensus 684 --------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~---D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 684 --------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALG---DPDHRVRIEAVRALVSV 741 (897)
T ss_pred --------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 1235788888999999999999999887632 2345677774 58889999999998875
Q ss_pred hcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHH
Q 002459 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEA 620 (919)
Q Consensus 541 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 620 (919)
. ..+.|..++.+.+ +.++..++.+|..+... ....++.|..+++++++.+|..|
T Consensus 742 ~-------------~~~~l~~~l~D~~-~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 742 D-------------DVESVAGAATDEN-REVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred c-------------CcHHHHHHhcCCC-HHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHH
Confidence 3 2345677787776 99999999999998752 12447889999999999999999
Q ss_pred HHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHH
Q 002459 621 AGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAED 700 (919)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~ 700 (919)
+.+|..+..... .++.++..|.+ .++.+|..|+.+|..+... ..++.|+.+|.+++..
T Consensus 796 ~~aLg~~g~~~~---------~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 796 LAALAELGCPPD---------DVAAATAALRA---SAWQVRQGAARALAGAAAD----------VAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHhcCCcch---------hHHHHHHHhcC---CChHHHHHHHHHHHhcccc----------chHHHHHHHhcCCCHH
Confidence 999999864321 23568888887 8899999999999886532 2569999999999999
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459 701 VHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (919)
Q Consensus 701 v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 753 (919)
||..|+.+|..+..++ ...+.|...+.+. ++.+|..|+.+|..
T Consensus 854 VR~~A~~aL~~~~~~~---------~a~~~L~~al~D~-d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 854 VRKAAVLALTRWPGDP---------AARDALTTALTDS-DADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhccCCCH---------HHHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence 9999999999973222 3466788888876 48899999999863
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=1.9e-12 Score=130.36 Aligned_cols=201 Identities=24% Similarity=0.224 Sum_probs=176.6
Q ss_pred HHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcC
Q 002459 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (919)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 629 (919)
+.+.+-++.|+.+|...+++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.++++.+++.|+.+|.|++.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 35667899999999988889999999999999987 57889999999999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHH
Q 002459 630 DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGAL 709 (919)
Q Consensus 630 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL 709 (919)
+.+++..+-. .++.+.+.+.+ ...+.++|..++++|.|++..++.+..+.. .++.++.+|.+++..++..++++|
T Consensus 84 ~~en~~~Ik~--~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 84 NDENQEQIKM--YIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ChhhHHHHHH--HHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999887754 47777777665 235778999999999999988888777654 799999999999999999999999
Q ss_pred HHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 710 WNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 710 ~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
.||+.+|.....++...+++.++.++..+.+..+-..+.....++..+..
T Consensus 159 ~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 159 VNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999988767777888888888765543
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.42 E-value=3.9e-11 Score=145.80 Aligned_cols=247 Identities=25% Similarity=0.174 Sum_probs=197.7
Q ss_pred HcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHH
Q 002459 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 426 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
+...++.|++.|.++++.+|..|+.+|+.+.. .+.++.|+..|+++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 44567899999999999999999999998762 336889999999999999999999998885421
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
...+.|...|. +.++.++..|+.+|..+.. +....++..+.+.+ +.++..|+.+|..+..
T Consensus 684 ----~~~~~L~~~L~---~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d-~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ----PPAPALRDHLG---SPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPD-HRVRIEAVRALVSVDD- 743 (897)
T ss_pred ----CchHHHHHHhc---CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCC-HHHHHHHHHHHhcccC-
Confidence 12356777785 4788999999998888652 22345777888776 8999999999887521
Q ss_pred CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
.+.|..++.++++.+|..++.+|..+.... ...++.|..++++ .++.+|..|+
T Consensus 744 ----------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D---~d~~VR~aA~ 796 (897)
T PRK13800 744 ----------------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGD---PDPLVRAAAL 796 (897)
T ss_pred ----------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC---CCHHHHHHHH
Confidence 234677899999999999999999986542 1236888899987 8899999999
Q ss_pred HHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHH
Q 002459 666 GALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARF 745 (919)
Q Consensus 666 ~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~ 745 (919)
.+|.++...+. .++.++..|.++++.||..|+.+|..+. ...+++.|+.+|.+++ +.+|.
T Consensus 797 ~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~-~~VR~ 856 (897)
T PRK13800 797 AALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPH-LDVRK 856 (897)
T ss_pred HHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCC-HHHHH
Confidence 99999854321 2366888999999999999999999875 2356789999998875 89999
Q ss_pred HHHHHHHHh
Q 002459 746 MAALALAYM 754 (919)
Q Consensus 746 ~A~~~L~~l 754 (919)
.|+.+|+.+
T Consensus 857 ~A~~aL~~~ 865 (897)
T PRK13800 857 AAVLALTRW 865 (897)
T ss_pred HHHHHHhcc
Confidence 999999876
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.1e-13 Score=131.46 Aligned_cols=199 Identities=21% Similarity=0.252 Sum_probs=142.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 002459 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (919)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 204 (919)
..|++|+|+.-. ++...+..+.+.|.+|+.|+|. ...+.|.....++++ .+|+.|+|++|.+++..++..+.+.|
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlE---g~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLE---GLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhcccc---ccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhh
Confidence 358888888754 8888888888889999999885 346777777777764 78999999999889999999889999
Q ss_pred CCCcEEEecCCCCCCHH---HHhC-CCCCCEEeecCCCC-CCHHHHHHHHhcCCCCCEEEeecc-CCCHHHHHHHHhcCc
Q 002459 205 PNLTDIGFLDCLNVDEV---ALGN-VLSVRFLSVAGTSN-MKWGVVSQVWHKLPKLVGLDVSRT-DVGPITISRLLTSSK 278 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~~---~l~~-~~~L~~L~l~~c~~-i~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~ 278 (919)
..|.+|+|++|...++. .+.+ -++|+.|+|+||.. +.+..+..+...||+|.+|||+.| .+++..+..+. ..+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~ 338 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFN 338 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcc
Confidence 99999999998655553 1223 26888899988854 445566777788999999999987 57775555544 488
Q ss_pred ccceecccccCCccchhHHHHHhhhhhhhhhhccchHH-HHHHhhhcccccc
Q 002459 279 SLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFK-ALASLFAETTKNE 329 (919)
Q Consensus 279 ~L~~L~l~~c~~l~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~l~~~~~~~~ 329 (919)
.|++|.++.|..|..+.+..+.+.-.-..+..+....+ +++.+.+.++..+
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 89999999998888777555543222224444444444 4444444444433
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.37 E-value=1.4e-10 Score=134.00 Aligned_cols=198 Identities=21% Similarity=0.292 Sum_probs=141.5
Q ss_pred CCccEEEecCCccchHHHHH-cCCCccEEEecCCCCCCHHH-----------HHHHHh--cCCCCCEEeeCCCCCCCCCH
Q 002459 103 MNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDAT-----------LSVIVA--RHEALESLQLGPDFCERITS 168 (919)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~~~~~~-----------l~~l~~--~~~~L~~L~L~~~~~~~i~~ 168 (919)
-++.++++.+.......... ....|++|.+.++..+.... +..++. .-.+|++|+++| ...+..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G--~~~~s~ 137 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG--SELFSN 137 (699)
T ss_pred heeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc--cchhhc
Confidence 35788888887766554433 45559999887764332211 111111 236999999964 667788
Q ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH-HHHhCCCCCCEEeecCCCCCCHHHHHH
Q 002459 169 DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQ 247 (919)
Q Consensus 169 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~~~~L~~L~l~~c~~i~~~~l~~ 247 (919)
.+...++..+|+|++|.+.+- .+..+.+..+..++|||..||++++ ++++ .|++++++|+.|.+.+-.--+...+..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred cHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHH
Confidence 889999999999999999998 4544558888899999999999997 6666 789999999999998754444466677
Q ss_pred HHhcCCCCCEEEeeccC-C-CHHHHHHHHh---cCcccceecccccCCccchhHHHHHhhhhhh
Q 002459 248 VWHKLPKLVGLDVSRTD-V-GPITISRLLT---SSKSLKVLCALNCPVLEEENNISAVKSKGKL 306 (919)
Q Consensus 248 l~~~~~~L~~L~l~~~~-i-~~~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l 306 (919)
++ ++++|+.||+|... . ....+...++ .+|+|+.||.++.. ++++.+..+.+++.++
T Consensus 216 LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 216 LF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNL 277 (699)
T ss_pred Hh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccH
Confidence 76 68999999999952 2 2222332222 57999999999777 6766666665544443
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.34 E-value=4.2e-12 Score=146.60 Aligned_cols=168 Identities=27% Similarity=0.451 Sum_probs=81.5
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 002459 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (919)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~ 202 (919)
.|++|+.|++++|..++|.++..++..|++|+.|.+. .|..+++.++..++..||+|++|++++|..+++.++..+..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~--~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLS--NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccC--CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 3444455555554444444554444445555555442 34444455555554445555555555544444444444444
Q ss_pred hCCCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCC-HHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCccc-
Q 002459 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMK-WGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL- 280 (919)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~-~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L- 280 (919)
+||+|+.|.+..+.. |+.++.+.+.+|.... +........+|++|+.+.+.++..++.++..++.+|++|
T Consensus 319 ~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT 390 (482)
T ss_pred hCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc
Confidence 444444443332211 1222222222222222 233334445566666666666544444444445555544
Q ss_pred -------------ceecccccCCccchhHHHHH
Q 002459 281 -------------KVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 281 -------------~~L~l~~c~~l~~~~~~~~~ 300 (919)
+.|++..|..+++..+....
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~ 423 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA 423 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHHh
Confidence 77777777777777755543
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.32 E-value=7.8e-10 Score=119.46 Aligned_cols=386 Identities=12% Similarity=0.075 Sum_probs=256.0
Q ss_pred HhhhcCCCChhHHHHhhcHHHHHHhhccCC--HHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC
Q 002459 363 RTAESNPQGLDDFWLKQGAGLLLSLMQSTQ--EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW 440 (919)
Q Consensus 363 ~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~ 440 (919)
...-.+++....+++.+.++.|..+++.++ .+.+...+.++..+..++.. ....+.+.+.++.|+++|.++
T Consensus 35 N~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd-------~v~svL~~~~ll~Ll~LLs~s 107 (678)
T KOG1293|consen 35 NLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQD-------KVDSVLRIIELLKLLQLLSES 107 (678)
T ss_pred chhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccc-------hHHHHHHHhhHHHHHHHhcCc
Confidence 334455556666788888999999996544 56666677777777765554 467889999999999999998
Q ss_pred C-HHHHHHHHHHHHHhhcChHHHHH-HHHh--CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHH
Q 002459 441 R-EGLQSEAAKAIANLSVNAKVAKA-VAEE--GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALV 516 (919)
Q Consensus 441 ~-~~~~~~a~~~L~~l~~~~~~~~~-i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~ 516 (919)
| ..++...++.+..+......... .... ..++.+..++..+.......-+....+++..++++..+.++|..+.+.
T Consensus 108 D~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~ 187 (678)
T KOG1293|consen 108 DSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKIN 187 (678)
T ss_pred chHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHH
Confidence 8 88999999999998773322222 2212 123444444443666777778888889999899999999998888777
Q ss_pred HHHhccCCCCHHHHHHHHHHHH---HhhcCCc-chH----HHHhcChHH--HHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 517 DLIFKWSSGGDGVLERAAGALA---NLAADDK-CSM----EVALAGGVH--ALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 517 ~lL~~~~~~~~~~~~~a~~~L~---~L~~~~~-~~~----~l~~~g~i~--~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
-++. ..+..++..|...+. ++..+++ ... .+.+.|..+ .+.+++++++ ...+..++.++.++...+
T Consensus 188 ~l~~---~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 188 ILLM---YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKS 263 (678)
T ss_pred HHHH---hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcc
Confidence 6664 245667777777777 6655543 222 233344444 3444555554 444455555555444332
Q ss_pred CCCC---------cc---------------------------------------cchhhccchHHHHHHH----------
Q 002459 587 DSNS---------NN---------------------------------------SAVGQEAGALEALVQL---------- 608 (919)
Q Consensus 587 ~~~~---------~~---------------------------------------~~~~~~~~~i~~Lv~l---------- 608 (919)
.+.. ++ +....+...++...++
T Consensus 264 ~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~ 343 (678)
T KOG1293|consen 264 FNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAAS 343 (678)
T ss_pred ccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhc
Confidence 0000 00 0000011111111111
Q ss_pred ------------------------------------------hCCCCHHHHHHHHHHHHhhcCCccc-HHHHHHcCCHHH
Q 002459 609 ------------------------------------------TRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEA 645 (919)
Q Consensus 609 ------------------------------------------L~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~ 645 (919)
....+..++.+|+..+.+++..-.. +..+....++++
T Consensus 344 ~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~p 423 (678)
T KOG1293|consen 344 DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQP 423 (678)
T ss_pred chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHH
Confidence 1113455566666666666554222 333444568899
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHH--HH
Q 002459 646 LVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNAL--RI 722 (919)
Q Consensus 646 Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~--~l 722 (919)
|++++.. ++..++..+.++|+|+... ...+..+.+.|||+.+.+++.+.++.++..++++|+++..+.+... ..
T Consensus 424 lvqll~d---p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~ 500 (678)
T KOG1293|consen 424 LVQLLMD---PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL 500 (678)
T ss_pred HHHHhhC---cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9999976 8889999999999999976 7788899999999999999999999999999999999998655433 23
Q ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhH
Q 002459 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 723 ~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
...-.-..++.++++++ ..+++.+-..|+|+.-++.+.+.
T Consensus 501 ~~ki~a~~i~~l~nd~d-~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 501 LAKIPANLILDLINDPD-WAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHHhhHHHHHHHHhCCC-HHHHHHHHHHHHHhhcCcHHHHH
Confidence 33344556667777665 88999999999999888655443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1e-10 Score=126.93 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=102.2
Q ss_pred CCCccEEEecCCccchH---HHHH--cCCCccEEEecCCCCCCHHHHHHHH---hcC-CCCCEEeeCCCCCCCCCHHHHH
Q 002459 102 CMNLQKLRFRGAESADS---IIHL--QARNLRELSGDYCRKITDATLSVIV---ARH-EALESLQLGPDFCERITSDAVK 172 (919)
Q Consensus 102 ~~~L~~L~l~~~~~~~~---~~~~--~~~~L~~L~l~~c~~~~~~~l~~l~---~~~-~~L~~L~L~~~~~~~i~~~~l~ 172 (919)
+++|++|+++++.+... .+.. ..++|++|++++|. +++..+..+. ..+ ++|+.|+++ +| .++..+..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~--~n-~l~~~~~~ 155 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLG--RN-RLEGASCE 155 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcC--CC-cCCchHHH
Confidence 45677777776655421 1111 11447777777665 5544443322 233 666777774 24 34432222
Q ss_pred ---HHHhcCCCCCEEEecCCCCCCHHHHHHHHhh---CCCCcEEEecCCCCCCHHH-------HhCCCCCCEEeecCCCC
Q 002459 173 ---AIALCCPKLKKLRLSGIRDICGDAINALAKL---CPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSN 239 (919)
Q Consensus 173 ---~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~-------l~~~~~L~~L~l~~c~~ 239 (919)
.....+++|++|++++| .++++++..+... +++|++|++++| .+++.+ +..+++|++|++++| .
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~ 232 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-N 232 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-c
Confidence 22334556777777766 5665555544432 246777777766 455432 234566777777765 4
Q ss_pred CCHHHHHHHHhcC----CCCCEEEeeccCCCHHHHHHHH---hcCcccceecccccCCccchh
Q 002459 240 MKWGVVSQVWHKL----PKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEEEN 295 (919)
Q Consensus 240 i~~~~l~~l~~~~----~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~l~~~~ 295 (919)
+++.++..+...+ +.|++|++++|.+++.+...+. ..+++|+++++++|. +++++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~ 294 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEG 294 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHH
Confidence 6665555555443 5677777777766554444332 334567777777766 55554
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.3e-10 Score=126.01 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=133.9
Q ss_pred ccccccCCCCCCHHHH---HHHHHhCCCccEEEecCCccc--hH----H--HHHcCCCccEEEecCCCCC--CHHHHHHH
Q 002459 80 WSSLDLRAHKCDIAMA---ASLASRCMNLQKLRFRGAESA--DS----I--IHLQARNLRELSGDYCRKI--TDATLSVI 146 (919)
Q Consensus 80 w~~l~l~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~--~~----~--~~~~~~~L~~L~l~~c~~~--~~~~l~~l 146 (919)
.+.++++...+++... .......+++++++++++... .. + ....+++|++|++++|... ....+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 4566776666654433 333445567888888776554 11 1 1114678888888887632 12233334
Q ss_pred HhcCCCCCEEeeCCCCCCCCCHHHHHHHH---hcC-CCCCEEEecCCCCCCHHHHHH---HHhhCCCCcEEEecCCCCCC
Q 002459 147 VARHEALESLQLGPDFCERITSDAVKAIA---LCC-PKLKKLRLSGIRDICGDAINA---LAKLCPNLTDIGFLDCLNVD 219 (919)
Q Consensus 147 ~~~~~~L~~L~L~~~~~~~i~~~~l~~l~---~~~-~~L~~L~L~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~l~ 219 (919)
... ++|++|+++ +| .+++.++..+. ..+ ++|+.|++++| .++..+... ....+++|++|++++| .++
T Consensus 105 ~~~-~~L~~L~ls--~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~ 178 (319)
T cd00116 105 LRS-SSLQELKLN--NN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GIG 178 (319)
T ss_pred hcc-CcccEEEee--CC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCc
Confidence 444 668888885 34 56655544432 234 78888888888 566443333 3345567888888887 566
Q ss_pred HHHH-------hCCCCCCEEeecCCCCCCHHHHHHH---HhcCCCCCEEEeeccCCCHHHHHHHHhcC----cccceecc
Q 002459 220 EVAL-------GNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVGPITISRLLTSS----KSLKVLCA 285 (919)
Q Consensus 220 ~~~l-------~~~~~L~~L~l~~c~~i~~~~l~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~~~~----~~L~~L~l 285 (919)
+.++ ..+++|++|++++| .+++.+...+ +.++++|++|++++|.+++.++..+...+ +.|+.|++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 5332 34568888888887 4666554443 35677888888888888887777776654 68888888
Q ss_pred cccCCccchhHHHHH
Q 002459 286 LNCPVLEEENNISAV 300 (919)
Q Consensus 286 ~~c~~l~~~~~~~~~ 300 (919)
++|. +++.+...+.
T Consensus 258 ~~n~-i~~~~~~~l~ 271 (319)
T cd00116 258 SCND-ITDDGAKDLA 271 (319)
T ss_pred cCCC-CCcHHHHHHH
Confidence 8886 7766644443
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.26 E-value=4.1e-09 Score=113.21 Aligned_cols=363 Identities=15% Similarity=0.102 Sum_probs=252.8
Q ss_pred ccccccccCCccccchhHHHHHHHHHHHHHHH-hhhcCCCChhHHHHhhcHHHHHHhh-ccCCHHHHHHHHHHHHhhhcc
Q 002459 332 VFLDWRNSKNKDKNLNEIMTWLEWILSHILLR-TAESNPQGLDDFWLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVI 409 (919)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~ 409 (919)
....|..+...+.....-...+..+-+..... ..+.+. .+-+..++.+| ..+.+++.......+..+...
T Consensus 13 r~ipWe~y~ra~~Is~~d~~~ik~~d~~~~~~~~~~~~~--------~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~ 84 (429)
T cd00256 13 RKINWQSYMRSQMISEEDYQFIKALEKKRVKEEILDVLS--------GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQE 84 (429)
T ss_pred CCCChHHHHHhCCCCHHHHHHHHHHHhHHHHHHHhcccH--------HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Confidence 35677777776666666666655554431000 001110 12257888888 457788888888888888866
Q ss_pred CCCCcccchhhHHHHHHc-----CCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcC-C
Q 002459 410 NDENASIDCGRAEAVMKD-----GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-N 482 (919)
Q Consensus 410 ~~~~~~~~~~~~~~i~~~-----g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~-~ 482 (919)
++ .....+.+. ....+++.+|..+|.-+...|+..|..+.. .+.........--++-+...++++ +
T Consensus 85 ~~-------~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 157 (429)
T cd00256 85 DD-------TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITN 157 (429)
T ss_pred ch-------HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCC
Confidence 44 344445543 567788889999999999999999999865 332111110000123344555543 4
Q ss_pred HHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHH
Q 002459 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVML 562 (919)
Q Consensus 483 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~l 562 (919)
...+..|+.+|..|...++.|..+.+.++++.|+.+|+. ...+..++..++-++|-|+.+++....+...+.++.++.+
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~-~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i 236 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN-ATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDI 236 (429)
T ss_pred cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh-ccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHH
Confidence 777888899999999999999999999999999999975 3346789999999999999998877777778999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHhcCCCCC---CcccchhhccchHHHHHHHhCC---CCHHHHHHHH-------HHHHhhcC
Q 002459 563 ARSCKFEGVQEQAARALANLAAHGDSN---SNNSAVGQEAGALEALVQLTRS---PHEGVRQEAA-------GALWNLSF 629 (919)
Q Consensus 563 l~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~~~~~~~i~~Lv~lL~~---~~~~~~~~a~-------~~L~~Ls~ 629 (919)
++....+.+.+-++.+|.|+...+... ......+++.+..+ +++.|.. .|+++.+..- .-+..++.
T Consensus 237 ~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lts 315 (429)
T cd00256 237 LKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSS 315 (429)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998877888889999999999753211 11223444555544 4444443 3655544321 12233332
Q ss_pred Cc------------------------ccHHHHHHcC--CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHH
Q 002459 630 DD------------------------RNREAIAAAG--GVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIG 682 (919)
Q Consensus 630 ~~------------------------~~~~~l~~~g--~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~ 682 (919)
.+ +|...+-+.+ .+..|+.+|.. +.++.+...|+.=++.++.. |..+..+.
T Consensus 316 fD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~ 393 (429)
T cd00256 316 FDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVE 393 (429)
T ss_pred HHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHH
Confidence 22 2333343332 46888999964 36788889999999999986 77888888
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 683 REGGVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 683 ~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
+.|+=..+++++.+++++|+..|+.++..|.
T Consensus 394 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 394 QLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998875
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.18 E-value=6.2e-11 Score=136.89 Aligned_cols=172 Identities=29% Similarity=0.432 Sum_probs=122.8
Q ss_pred cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHH--HHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 002459 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD--AVKAIALCCPKLKKLRLSGIRDICGDAINAL 200 (919)
Q Consensus 123 ~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~--~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l 200 (919)
.+++|+.|.+..|..+++..+..+...|++|+.|++++ .|..++.. ....+...|++|+.|++++|..++|.++..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG-CCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC-cccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 47888888888888888877778888888888888852 13333332 2344667788888888888866888888888
Q ss_pred HhhCCCCcEEEecCCCCCCHHHH----hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccC----CCHHHHHH
Q 002459 201 AKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD----VGPITISR 272 (919)
Q Consensus 201 ~~~~~~L~~L~l~~~~~l~~~~l----~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~----i~~~~l~~ 272 (919)
+..||+|+.|.+.+|..+++.++ ..|++|++|++++|..+++.++..+..+||+|+.|.+.... +++.++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 88888888888888877888776 36788888888888888888888888788887777765532 55555554
Q ss_pred HHhcCc-ccceecccccCCccchh
Q 002459 273 LLTSSK-SLKVLCALNCPVLEEEN 295 (919)
Q Consensus 273 l~~~~~-~L~~L~l~~c~~l~~~~ 295 (919)
+..... .+..+.+.+|+.+++..
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhh
Confidence 444332 45555555555555544
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.15 E-value=1.4e-08 Score=118.32 Aligned_cols=326 Identities=17% Similarity=0.130 Sum_probs=232.3
Q ss_pred hcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 002459 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (919)
Q Consensus 379 ~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (919)
.|.+..++++.+++...+.-+--++..+...+.+. .+. ++..+.+-|.++++.++..|++++.++. +
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~---------~~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~ 108 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL---------LIL---IINSLQKDLNSPNPYIRGLALRTLSNIR-T 108 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH---------HHH---HHHHHHHHHCSSSHHHHHHHHHHHHHH--S
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH---------HHH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc-c
Confidence 45578999999999999888888888877554431 111 4557778888999999999999999988 4
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
++..+. .++.+.+++.++++.+|..|+.++.++... ++... .. .++.+..++. +.++.++..|+.++
T Consensus 109 ~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~---d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 109 PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLS---DKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTT---HSSHHHHHHHHHHH
T ss_pred cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhcc---CCcchhHHHHHHHH
Confidence 444433 368889999999999999999999999874 33221 22 4788888885 47799999999999
Q ss_pred HHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHH
Q 002459 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 617 (919)
..+ ..++....-.-...+..|..++...+ +-.+..+++.|..++... .... .....++.+..++.+.++.+.
T Consensus 177 ~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~q~~il~~l~~~~~~~---~~~~---~~~~~i~~l~~~l~s~~~~V~ 248 (526)
T PF01602_consen 177 SEI-KCNDDSYKSLIPKLIRILCQLLSDPD-PWLQIKILRLLRRYAPME---PEDA---DKNRIIEPLLNLLQSSSPSVV 248 (526)
T ss_dssp HHH-HCTHHHHTTHHHHHHHHHHHHHTCCS-HHHHHHHHHHHTTSTSSS---HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-ccCcchhhhhHHHHHHHhhhcccccc-hHHHHHHHHHHHhcccCC---hhhh---hHHHHHHHHHHHhhccccHHH
Confidence 999 11111100111223444444444554 888888999988877531 1110 014678899999998899999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc-c
Q 002459 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-S 696 (919)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~-~ 696 (919)
..|+.++..+..... .-..++++|+.++.+ .+++++..++..|..++... ...+ . .....+..+. +
T Consensus 249 ~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s---~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~ 315 (526)
T PF01602_consen 249 YEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS---SDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCS
T ss_pred HHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc---ccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCC
Confidence 999999999887755 223468999999987 89999999999999998765 1122 2 2333444555 8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 697 EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 697 ~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
++..++..++..|..++. +.|... .++.|...+.+..++..+..++.+++.++.
T Consensus 316 ~d~~Ir~~~l~lL~~l~~-~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLAN-ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp SSHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhccc-ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 899999999999999995 344433 466888888555457799999999987764
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=1.2e-09 Score=99.05 Aligned_cols=116 Identities=39% Similarity=0.524 Sum_probs=106.8
Q ss_pred HHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-
Q 002459 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE- 500 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~- 500 (919)
.+.+.|+++.++++|+++++.++..++.+|.+++.+ ++.+..+.+.|+++.+++++.++++.++..++++|++++.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 367889999999999999999999999999999984 899999999999999999999999999999999999999986
Q ss_pred ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 501 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
+....+.+.|+++.|++++.. .+..+++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~---~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDS---SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhc---CCHHHHHHHHHHHHHhh
Confidence 566777889999999999964 68899999999999987
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.12 E-value=4.5e-08 Score=114.17 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=236.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (919)
.++.+.+++.++++.+|..|+.++.++...+++. +... .++.+.++|.+.++.++..|+.++..+..++
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----------HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----------HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCc
Confidence 3578888899999999999999999988665542 3333 6889999999999999999999999992233
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002459 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (919)
Q Consensus 460 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (919)
+....+. ...++.|.+++...++..+..++..|..++..+.....- ...++.+..++++ .++.+.-.++.++..
T Consensus 184 ~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s---~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 184 DSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQS---SSPSVVYEAIRLIIK 257 (526)
T ss_dssp HHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred chhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhc---cccHHHHHHHHHHHH
Confidence 2211111 113555566667789999999999999988754322210 4467778888863 778889999999998
Q ss_pred hhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-CCCCHHHHH
Q 002459 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQ 618 (919)
Q Consensus 540 L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~ 618 (919)
+...+. .-..+++.|..++.+++ +.++..++..|..++... ...+. .....+..+ .+++..++.
T Consensus 258 l~~~~~-----~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~~~~------~~~v~---~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 258 LSPSPE-----LLQKAINPLIKLLSSSD-PNVRYIALDSLSQLAQSN------PPAVF---NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HSSSHH-----HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHCCHC------HHHHG---THHHHHHHHHCSSSHHHHH
T ss_pred hhcchH-----HHHhhHHHHHHHhhccc-chhehhHHHHHHHhhccc------chhhh---hhhhhhheecCCCChhHHH
Confidence 876544 34457899999999665 889999999999998741 11222 122223344 478999999
Q ss_pred HHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHccC
Q 002459 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSE 697 (919)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~~ 697 (919)
.++.+|..++.. .+... .++.|...+.. ..+++++..++..++.++.. +....+ .++.+++++..+
T Consensus 323 ~~l~lL~~l~~~-~n~~~-----Il~eL~~~l~~--~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~ 389 (526)
T PF01602_consen 323 KALDLLYKLANE-SNVKE-----ILDELLKYLSE--LSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEIS 389 (526)
T ss_dssp HHHHHHHHH--H-HHHHH-----HHHHHHHHHHH--C--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCT
T ss_pred HHHHHHhhcccc-cchhh-----HHHHHHHHHHh--ccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhc
Confidence 999999999854 33333 35677888854 25888999999999999853 322222 567899999888
Q ss_pred CHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 698 AEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
++.+...+...+.++.. +++.+..+ +..|++.+.+..++.++..++|.++..+.
T Consensus 390 ~~~~~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 390 GDYVSNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp GGGCHCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred cccccchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 78888888888888865 55555444 67889999887778899999999986543
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=8.6e-10 Score=110.79 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=125.7
Q ss_pred hCCCccEEEecCCccchHH------HHHcCCCccEEEecCCCCCCHHHHHH------------HHhcCCCCCEEeeCCCC
Q 002459 101 RCMNLQKLRFRGAESADSI------IHLQARNLRELSGDYCRKITDATLSV------------IVARHEALESLQLGPDF 162 (919)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~c~~~~~~~l~~------------l~~~~~~L~~L~L~~~~ 162 (919)
.||+|++|+|+.+.+.... +..+|.+|++|.|.+|. +...+=.. .+..-+.|+.+..+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~--- 165 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG--- 165 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee---
Confidence 5678999999877654321 12268899999999886 44322222 22345788888885
Q ss_pred CCCCCHHHH---HHHHhcCCCCCEEEecCCCCCCHHHHHHH---HhhCCCCcEEEecCCCCCCHH-------HHhCCCCC
Q 002459 163 CERITSDAV---KAIALCCPKLKKLRLSGIRDICGDAINAL---AKLCPNLTDIGFLDCLNVDEV-------ALGNVLSV 229 (919)
Q Consensus 163 ~~~i~~~~l---~~l~~~~~~L~~L~L~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~-------~l~~~~~L 229 (919)
.+++.+.+- ....+.+|.|+.+++... .+..+++..+ ..+||+|+.|+|.+|. ++.. .+..+++|
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchh
Confidence 345555443 344466789999999877 5655555433 3678999999999984 5542 23567889
Q ss_pred CEEeecCCCCCCHHHHHHHH----hcCCCCCEEEeeccCCCHHHHHHHHh---cCcccceecccccC
Q 002459 230 RFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRLLT---SSKSLKVLCALNCP 289 (919)
Q Consensus 230 ~~L~l~~c~~i~~~~l~~l~----~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~ 289 (919)
+.|+++.| .+.+.|..++. ...|.|+.|++.+|+++-++...+.. ..|.|..|+|++|.
T Consensus 244 ~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99999998 46666665555 45789999999999888776655543 35889999999998
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.09 E-value=8.1e-08 Score=103.38 Aligned_cols=320 Identities=14% Similarity=0.083 Sum_probs=225.3
Q ss_pred CCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc-ChHHHHHHHHh-----CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc
Q 002459 428 GGIRLLLDLAKS-WREGLQSEAAKAIANLSV-NAKVAKAVAEE-----GGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (919)
Q Consensus 428 g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 500 (919)
.++..++.+|+. .++++....+..+..|.. ++.....+.+. ....+++.+|..+|.-+...++.+|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 556678888876 578888888888888776 55555566654 34778888998899999999999999998642
Q ss_pred -ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC-chHHHHHHHHH
Q 002459 501 -EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEGVQEQAARA 578 (919)
Q Consensus 501 -~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~a~~~ 578 (919)
.+.......-..+-|...+.. ..+...+..++.+|..|...++.+..+.+.++++.|+.+++... +...+..++-+
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~--~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNN--ITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhc--cCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 211111111122344455542 23466778888999999999999999999999999999998654 46788999999
Q ss_pred HHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-CHHHHHHHHHHHHhhcCCc-------ccHHHHHHcCCHHHHHHHH
Q 002459 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFDD-------RNREAIAAAGGVEALVVLA 650 (919)
Q Consensus 579 L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~-------~~~~~l~~~g~i~~Lv~ll 650 (919)
++-|+..+ +....+...+.++.|+++++.. .+.+..-++.+|.|+...+ .....+++.|..+ ++..|
T Consensus 211 lWlLSF~~----~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L 285 (429)
T cd00256 211 IWLLTFNP----HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSL 285 (429)
T ss_pred HHHHhccH----HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHH
Confidence 99999853 3444556789999999999765 5678888999999987742 2245666666544 55555
Q ss_pred hhcCCCCHHHHHHHHHH-------HHHccc---------------Ccc---------hhhHHHhc--CChHHHHHHHc-c
Q 002459 651 QSCSNASPGLQERAAGA-------LWGLSV---------------SEA---------NCIAIGRE--GGVAPLIALAR-S 696 (919)
Q Consensus 651 ~~~~~~~~~~~~~A~~~-------L~~l~~---------------~~~---------~~~~l~~~--g~v~~L~~lL~-~ 696 (919)
....-.++++.+.--.. +-.++. +|. |...+-+. ..+..|+++|. +
T Consensus 286 ~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 286 EQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS 365 (429)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 44233566655432221 122221 222 22233322 24577999994 5
Q ss_pred CCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 697 EAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 697 ~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.++.+..-|+.=++.++. +|..+..+-+.|+=..+.+++.+++ +.+|..|..|+..+.
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm 424 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLM 424 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 678888889999999988 5667777777888888889998775 899999999988664
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.07 E-value=2e-09 Score=97.62 Aligned_cols=116 Identities=41% Similarity=0.474 Sum_probs=106.3
Q ss_pred hhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC
Q 002459 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (919)
Q Consensus 596 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~ 674 (919)
+.+.|+++.++.++.+++..++..++.+|.+++.+ ++....+.+.|+++.+++++.+ .++.++..|+++|++++..
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHccC
Confidence 45779999999999999999999999999999998 6778888999999999999997 8999999999999999987
Q ss_pred c-chhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 675 E-ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 675 ~-~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
. .....+.+.|+++.|++++.+.+.+++..++++|.+++.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5 566777889999999999999999999999999999873
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.05 E-value=3.7e-08 Score=106.79 Aligned_cols=365 Identities=15% Similarity=0.064 Sum_probs=233.0
Q ss_pred HHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhc-ChHH
Q 002459 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSV-NAKV 461 (919)
Q Consensus 385 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~~~~a~~~L~~l~~-~~~~ 461 (919)
+.-+-+.+|+....|..-..+++.+.+++ +..+.+.|+++.+..+++. +..+.+...+.++..++. +.+.
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~~~~-------K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~ 87 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGFTDN-------KETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDK 87 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcCCCc-------cchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccch
Confidence 33345567777777888888877766654 4468899999999999886 456666666667777665 6778
Q ss_pred HHHHHHhCcHHHHHHHHhcCC-HHHHHHHHHHHHhhccCcccHHHHH---HhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 462 AKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIA---DAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~---~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
...+.+.+.++.|++++.+.| ..+++..++.+.++......+.... ....+..+..++. -+.......-+...
T Consensus 88 v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s---~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 88 VDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS---IELKYISRLDVSRA 164 (678)
T ss_pred HHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh---hhhhhhhhhhhhhh
Confidence 888889999999999999988 8899999999999998764433322 3334444444442 13333444444555
Q ss_pred HHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHH---HHhcCCCCCC-cccchhhccchHH--HHHHHhCC
Q 002459 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA---NLAAHGDSNS-NNSAVGQEAGALE--ALVQLTRS 611 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~---~L~~~~~~~~-~~~~~~~~~~~i~--~Lv~lL~~ 611 (919)
.+++..++.+..+.++|..+.+.-++...+ ...+..|..+++ ++...++... ...-.+.+.|+.+ .+..++++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s-~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLS-SKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD 243 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhh-HHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence 566666666667777788777777666544 677788888887 5555421100 0011112333333 12223333
Q ss_pred CCHHHHHHHHHHHHhhcCCc----------------------------------------------------ccHHHHHH
Q 002459 612 PHEGVRQEAAGALWNLSFDD----------------------------------------------------RNREAIAA 639 (919)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~----------------------------------------------------~~~~~l~~ 639 (919)
++...+..++.++.++-... ..+....+
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e 323 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHE 323 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhh
Confidence 33333332222222211000 00000011
Q ss_pred cCCHHHHHHHHhh-------------------------------------------------cCCCCHHHHHHHHHHHHH
Q 002459 640 AGGVEALVVLAQS-------------------------------------------------CSNASPGLQERAAGALWG 670 (919)
Q Consensus 640 ~g~i~~Lv~ll~~-------------------------------------------------~~~~~~~~~~~A~~~L~~ 670 (919)
...++..++++.. ....+.....+|+-.+.+
T Consensus 324 ~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s 403 (678)
T KOG1293|consen 324 EATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKS 403 (678)
T ss_pred hhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 1112222222211 011344556666666666
Q ss_pred cccC-cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Q 002459 671 LSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (919)
Q Consensus 671 l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~ 748 (919)
++.+ ..-+..+-..++.++|++++.+++..|...++++|+|+.. ..+.+..+++.|+|..+..++.+.+ +.+|..+.
T Consensus 404 ~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~-~n~r~~~~ 482 (678)
T KOG1293|consen 404 FSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD-FNSRANSL 482 (678)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC-chHHHHHH
Confidence 6654 4444456677899999999999999999999999999976 7788999999999999999999875 78999999
Q ss_pred HHHHHhhCCCCch
Q 002459 749 LALAYMFDGRMDE 761 (919)
Q Consensus 749 ~~L~~l~~~~~~~ 761 (919)
|+|+++.-+..+.
T Consensus 483 ~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 483 WVLRHLMFNCDEE 495 (678)
T ss_pred HHHHHHHhcchHH
Confidence 9999998777544
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.6e-06 Score=100.65 Aligned_cols=419 Identities=19% Similarity=0.166 Sum_probs=258.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc--
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV-- 457 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~-- 457 (919)
...|+.-|.+.|.+++..|.+++.++.. ....++.|..++.+ .++++|..|+-.++.+..
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~-----------------~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAK-----------------TEPLLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhc-----------------ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 4557777778888899999999998552 23367788888876 699999999998888753
Q ss_pred ----ChHHHHHHHHhCcHHHHHHHH-hcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhc-cCCCCHHHHH
Q 002459 458 ----NAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLE 531 (919)
Q Consensus 458 ----~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~~ 531 (919)
+.+.+..+. ..|+..+ +...+.++..-+.++..++.+. ... .-|.|+.+|.+ ..+.++..++
T Consensus 69 w~~l~~e~~~sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~~~------l~e-~WPell~~L~q~~~S~~~~~rE 136 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIK-----SSLLEIIQSETEPSVRHKLADVIAEIARND------LPE-KWPELLQFLFQSTKSPNPSLRE 136 (1075)
T ss_pred hhcCCHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHhc------ccc-chHHHHHHHHHHhcCCCcchhH
Confidence 456665554 3344444 5578889999999999999853 011 34445544432 2568899999
Q ss_pred HHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH---
Q 002459 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL--- 608 (919)
Q Consensus 532 ~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~l--- 608 (919)
.|..+|+.+...-.+...---....+.+.+-+.+++++ ++..+++++...+...+.+......+ ...+|.++..
T Consensus 137 ~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~--~~llP~~l~vl~~ 213 (1075)
T KOG2171|consen 137 SALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF--RDLLPSLLNVLQE 213 (1075)
T ss_pred HHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH--HHHhHHHHHHhHh
Confidence 99999999986432221100001233344445556645 99999999988887533122111111 2345555544
Q ss_pred -hCCCCHHHHHHHHHHHHhhcCCc-cc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcch-hhHHHh-
Q 002459 609 -TRSPHEGVRQEAAGALWNLSFDD-RN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN-CIAIGR- 683 (919)
Q Consensus 609 -L~~~~~~~~~~a~~~L~~Ls~~~-~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~-~~~l~~- 683 (919)
+..++.+.-..+..+|..+.... .. +..+.+ .++.-..+..+ ..-+..+|..|+..|..++..... ++....
T Consensus 214 ~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~ 290 (1075)
T KOG2171|consen 214 VIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLALL 290 (1075)
T ss_pred hhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchhh
Confidence 44567777777888888887653 22 333322 45555666654 346788999999999999876222 111111
Q ss_pred -cCChHHHHHHHccC--C--------------HHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 684 -EGGVAPLIALARSE--A--------------EDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 684 -~g~v~~L~~lL~~~--~--------------~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
...++.++.++... + ..-...|..+|-.++.+-+... +-.-.++.+-.++.+.+ ..-|.+
T Consensus 291 ~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~-w~~R~A 367 (1075)
T KOG2171|consen 291 GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTE-WKERHA 367 (1075)
T ss_pred hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCC-HHHHHH
Confidence 22344455554221 1 1245667778888776322111 11123456667777775 678999
Q ss_pred HHHHHHHhhCCCCchhHhhccccccccceechhHHHHhhHHHHHHHHHhc---CChhHHHHHHhcccchhhHHhhHhhhh
Q 002459 747 AALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTF---SDPQAFATAAASSAPAALTQVTERARI 823 (919)
Q Consensus 747 A~~~L~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~lv~~~---~~~~~~~~a~~ala~~~~~~~~~~~~i 823 (919)
|..|++.++.|..+.+.. .+..|.+.|..+ .+|-++.+|+.|++-+.-.=......-
T Consensus 368 aL~Als~i~EGc~~~m~~--------------------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIG--------------------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHHcccHHHHHH--------------------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 999999999988764221 233455555543 567777787744443332111111111
Q ss_pred hccccccccchhhHHHHHHhcCC-chHHHhhHHHHHHhhccC
Q 002459 824 QEAGHLRCSGAEIGRFITMLRNP-SSVLKSCAAFALLQFTIP 864 (919)
Q Consensus 824 ~~~g~~~~~~~~i~~l~~~l~~~-~~~~~~~aa~al~~~~~~ 864 (919)
..+. .++.|+..+.+. +++++..||.|+.+|...
T Consensus 428 ~~e~-------l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 428 HHER-------LPPALIALLDSTQNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHh-------ccHHHHHHhcccCchHHHHHHHHHHHHHHHh
Confidence 2222 566788888654 669999999999988743
No 49
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.01 E-value=2.2e-10 Score=83.15 Aligned_cols=47 Identities=40% Similarity=0.780 Sum_probs=41.0
Q ss_pred cCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccccccC
Q 002459 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR 86 (919)
Q Consensus 40 ~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~l~l~ 86 (919)
|..||+|++.+||+||+..|+.+++.|||+|+.++.++.+|+++.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 67899999999999999999999999999999999988999988653
No 50
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.8e-07 Score=106.72 Aligned_cols=357 Identities=17% Similarity=0.072 Sum_probs=230.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHH----HHHHccCCHHHHHHHHHHHHHhh
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLL----LDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~L----v~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
++.|.+-.++.++..|+.|...|..+...-++. ..+.++.+ .+.+.+++..+|..|++++..++
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~------------~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNT------------LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc------------cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 456666668899999999999999977543332 22334444 44455555559999999999987
Q ss_pred c-ChHHHHHHHHhCc-HHHHHHHH----hcCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHH
Q 002459 457 V-NAKVAKAVAEEGG-INILAVLA----RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (919)
Q Consensus 457 ~-~~~~~~~i~~~g~-i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 529 (919)
. .+.++...-..+. +|.++..+ ..++......+..+|..+.... ..-..... ..+...+.+..+ ..-++.+
T Consensus 188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n-~~l~~~~ 265 (1075)
T KOG2171|consen 188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKN-KELENSI 265 (1075)
T ss_pred HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhc-ccccHHH
Confidence 6 3333333333322 66666555 4567777888899999988864 22222211 245556666665 5567889
Q ss_pred HHHHHHHHHHhhcCCcchHHH---HhcChHHHHHHHHhcCCc---------------hHHHHHHHHHHHHHhcCCCCCCc
Q 002459 530 LERAAGALANLAADDKCSMEV---ALAGGVHALVMLARSCKF---------------EGVQEQAARALANLAAHGDSNSN 591 (919)
Q Consensus 530 ~~~a~~~L~~L~~~~~~~~~l---~~~g~i~~L~~ll~~~~~---------------~~~~~~a~~~L~~L~~~~~~~~~ 591 (919)
+..|+..|..+++....+... .-...++.++.++....+ ..-...|..+|-.++.+=..
T Consensus 266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--- 342 (1075)
T KOG2171|consen 266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--- 342 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---
Confidence 999999999998763222111 122345555555432211 11234677888888764211
Q ss_pred ccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHH--cCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002459 592 NSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVVLAQSCSNASPGLQERAAGALW 669 (919)
Q Consensus 592 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~ 669 (919)
..+-.-.++.+-.++.+.+..-|.+|+.+|..++..... .|.. ...++..+..|.+ +++.+|.+|+.+++
T Consensus 343 ---~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~--~m~~~l~~Il~~Vl~~l~D---phprVr~AA~naig 414 (1075)
T KOG2171|consen 343 ---KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSD--VMIGNLPKILPIVLNGLND---PHPRVRYAALNAIG 414 (1075)
T ss_pred ---hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHH
Confidence 112245566777788999999999999999999876322 2221 2356777778877 99999999999999
Q ss_pred HcccC-cchhhHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHHcCC-cccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 670 GLSVS-EANCIAIGREGGVAPLIALARS-EAEDVHETAAGALWNLAFN-PGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 670 ~l~~~-~~~~~~l~~~g~v~~L~~lL~~-~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
.++.+ ...-+.-...-.++.|+..+.+ .++.|+..|+.+|.|+... +...-.=.=.+.+..++.+|..+.++.+|+.
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 99986 3333333444566778888866 4679999999999999762 2221100012334435555555667999999
Q ss_pred HHHHHHHhhCCCCchh
Q 002459 747 AALALAYMFDGRMDEF 762 (919)
Q Consensus 747 A~~~L~~l~~~~~~~~ 762 (919)
++.+++..+....+.+
T Consensus 495 vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKF 510 (1075)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999998887665443
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.93 E-value=4.8e-08 Score=104.25 Aligned_cols=271 Identities=17% Similarity=0.132 Sum_probs=178.9
Q ss_pred ccccccccCCccccchhHHHHHHHHHHHHHHHhhhcCCCChhHHHHhhc---HHHHHHhh-cc-CCHHHHHHHHHHHHhh
Q 002459 332 VFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQG---AGLLLSLM-QS-TQEDVQERAATGLATF 406 (919)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g---i~~Lv~lL-~~-~~~~~~~~a~~~L~~L 406 (919)
....|..+...+.....-...+..+.+..... ...++...| +..++.+| +. +++++.......+..+
T Consensus 13 r~i~W~~~~ra~~is~~~~~~ik~~~~~~~~~--------~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dl 84 (312)
T PF03224_consen 13 RPIPWDGYVRAGLISEEDLSLIKKLDKQSKEE--------RRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDL 84 (312)
T ss_dssp S---HHHHHHTTSS-HHHHHHHHHHHHHHH---------------------------HHHHHH---HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhCCCCHHHHHHHHHHHCCCHHH--------HHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 35677777777777666666655544441111 111233333 56777777 34 7899999999999998
Q ss_pred hccCCCCcccchhhHHHHHH------cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc
Q 002459 407 VVINDENASIDCGRAEAVMK------DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480 (919)
Q Consensus 407 ~~~~~~~~~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~ 480 (919)
...+... ...+.. .....++++++.++|.-++..|+..|..+......+..-...+.++.+++.+++
T Consensus 85 l~~~~~~-------~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~ 157 (312)
T PF03224_consen 85 LSDDPSR-------VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSS 157 (312)
T ss_dssp HH-SSSS-------HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-
T ss_pred HhcCHHH-------HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 8776643 223332 236889999999999999999999999987633222222224567888888875
Q ss_pred ----CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHh----ccCCCCHHHHHHHHHHHHHhhcCCcchHHHHh
Q 002459 481 ----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF----KWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (919)
Q Consensus 481 ----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~----~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~ 552 (919)
++..++..|+.+|.++...++.|..+.+.|+++.++.++. .....+..++..++.++|-|+.+++....+.+
T Consensus 158 ~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 237 (312)
T PF03224_consen 158 QLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK 237 (312)
T ss_dssp TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred hhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc
Confidence 4566789999999999999999999999999999999992 11456678899999999999999999999999
Q ss_pred cChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC--CCHHHHHH
Q 002459 553 AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS--PHEGVRQE 619 (919)
Q Consensus 553 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~ 619 (919)
.+.++.|+.+++....+.+.+-+..++.|+...+. ..+...+...++++.+-.+... .|+++.+.
T Consensus 238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~--~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP--KSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS--TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH--HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999988878999999999999997532 2256666667766666555543 37776654
No 52
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.89 E-value=7e-08 Score=99.66 Aligned_cols=278 Identities=23% Similarity=0.236 Sum_probs=204.1
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCHH--HHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 460 KVAKAVAEEGGINILAVLARSMNRL--VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 460 ~~~~~i~~~g~i~~Lv~lL~~~~~~--~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
..+..+...||++.|++++..++.+ ++..|...|..+... +|++.++..| ...++.+-+ ..+.+++.+..+++|
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK--~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAK--EREPVELARSVAGIL 246 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhh--hcCcHHHHHHHHHHH
Confidence 3556777889999999999988655 588899999888764 7888888776 555555543 357888999999999
Q ss_pred HHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHH
Q 002459 538 ANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (919)
Q Consensus 538 ~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 616 (919)
.+|-.. ++....+++.|++..++...+..+ +.+..+|+-+|.|++.++ ....+..+++..+-+.|..+-.+.|+-.
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~--~~a~qrrmveKr~~EWLF~LA~skDel~ 323 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHG--GQAVQRRMVEKRAAEWLFPLAFSKDELL 323 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhc--hhHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 999985 467789999999999999999886 999999999999999876 4456777788888999998888888889
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHH-hcCChHHHHHHHc
Q 002459 617 RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG-REGGVAPLIALAR 695 (919)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~-~~g~v~~L~~lL~ 695 (919)
|.+|+-+...|+.+.+....+...|.+..+-.++.+ .++..- +.+. ....-+ ..+-++.|+.+|.
T Consensus 324 R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~---~DP~~F----------ARD~-hd~aQG~~~d~LqRLvPlLd 389 (832)
T KOG3678|consen 324 RLHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS---LDPGRF----------ARDA-HDYAQGRGPDDLQRLVPLLD 389 (832)
T ss_pred HHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc---cCcchh----------hhhh-hhhhccCChHHHHHhhhhhh
Confidence 999999999999998888888888877666666655 333211 1110 000000 1134677888888
Q ss_pred cCCHHHHHHHHHHHHHHcC--CcccHHHH-HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 696 SEAEDVHETAAGALWNLAF--NPGNALRI-VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 696 ~~~~~v~~~a~~aL~~l~~--~~~~~~~l-~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
+..-+.+..++.-++.=+. ...++..+ -+-|+|+.|-++..+.+ ...-..|..+|..+...-+
T Consensus 390 S~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d-~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 390 SNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD-EVAAKFASEALTVIGEEVP 455 (832)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHhccccC
Confidence 7665555544444433222 33444444 46788999999988664 6667778888888776554
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6e-07 Score=99.77 Aligned_cols=257 Identities=19% Similarity=0.075 Sum_probs=198.0
Q ss_pred HHHHHHhhccC-CHHHHHHHHHHHHhhhc-cCCCCcccchhhHHHHHHcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhc
Q 002459 381 AGLLLSLMQST-QEDVQERAATGLATFVV-INDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (919)
Q Consensus 381 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~~l~~ 457 (919)
+..|+.-|+.+ |+..|.+|+.-|+.+.. ++.+.++ -+--...+|.|+.+|+++ +.++...|+++|.+|+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs-------~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLS-------GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhc-------cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 45677777554 88888888887776553 3333322 233346789999999985 89999999999999998
Q ss_pred -ChHHHHHHHHhCcHHHHHHHHh-cCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHH
Q 002459 458 -NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (919)
Q Consensus 458 -~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (919)
-|.....+++.++||.|++-|. -+..++.+.++.+|..|+.. .-..+.++|++...+..+. .-+..+++.|+.
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylD---FFSi~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLD---FFSIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHH---HHHHHHHHHHHH
Confidence 8889999999999999997554 47889999999999999984 5578889999999998884 356778999999
Q ss_pred HHHHhhcC--CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-
Q 002459 536 ALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP- 612 (919)
Q Consensus 536 ~L~~L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~- 612 (919)
+..|+|.. ++.-..++ ..+|.|..+|...+ ....+.++-++..++..-...++.-..+...+.+....+++.-.
T Consensus 317 iaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~ 393 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVM--EALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP 393 (1051)
T ss_pred HHHHHHhcCCCccchHHH--HHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc
Confidence 99999974 33333343 36888999998876 67778888899888876554555556667888999888888654
Q ss_pred ---CHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhh
Q 002459 613 ---HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQS 652 (919)
Q Consensus 613 ---~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~ 652 (919)
+..+....+..|..++.+ +.....+.+.+....|-.+|..
T Consensus 394 t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 394 TILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 234556677888888888 5557777788888888888764
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.85 E-value=5.7e-07 Score=92.96 Aligned_cols=330 Identities=15% Similarity=0.103 Sum_probs=228.8
Q ss_pred cHHHHHHhhcc-CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 002459 380 GAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (919)
Q Consensus 380 gi~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (919)
.+..++.++++ ..++....+...+..+...+..-...-... ..-...-.-++.+.+|..++.-+...+.+++..++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~-a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDY-AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHH-HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 35678888855 446666677777777665544321110000 0111223366788999988888888889999988762
Q ss_pred hHHHHHHHHhCc-HHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHH
Q 002459 459 AKVAKAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (919)
Q Consensus 459 ~~~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (919)
...+-...+... ...|-..+++ .+......|+++|..+...++.|..+..++|+..++..+.+ ...+-.++....-+
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s-~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS-TKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc-cCcchhHHHHHHHH
Confidence 211111101101 2233444444 67778889999999999999999999999999999999953 55677899999999
Q ss_pred HHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCc---ccchhhccchHHHHHHHhCC--
Q 002459 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN---NSAVGQEAGALEALVQLTRS-- 611 (919)
Q Consensus 537 L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~~~~~i~~Lv~lL~~-- 611 (919)
+|-|+.++...+.+..-+.++.|..+++++..+.|.+-++.++.|+...++.... ....++..++.+. ++.|..
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQSLEERK 302 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HHHHHhcC
Confidence 9999999888877766789999999999887788889999999999986532211 1233334444443 444432
Q ss_pred -CCHHHHHHHH-------HHHHhhcCCc------------------------ccHHHHHHc--CCHHHHHHHHhhcCCCC
Q 002459 612 -PHEGVRQEAA-------GALWNLSFDD------------------------RNREAIAAA--GGVEALVVLAQSCSNAS 657 (919)
Q Consensus 612 -~~~~~~~~a~-------~~L~~Ls~~~------------------------~~~~~l~~~--g~i~~Lv~ll~~~~~~~ 657 (919)
+|+++....- .-...|++.+ +|...+-+. ..+..|+.+|+. +.+
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~--s~D 380 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET--SND 380 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc--CCC
Confidence 3555443321 1222233322 222233332 357889999987 467
Q ss_pred HHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 658 PGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 658 ~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
|.+-..|+.-++..... |+.+..+.+.||-+.+++++..++++|+..|+.|+..|..
T Consensus 381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 88888999999999976 8888899999999999999999999999999999988753
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.2e-10 Score=113.96 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=129.2
Q ss_pred CCccEEEecCCccchHH---HHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCC
Q 002459 103 MNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (919)
Q Consensus 103 ~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~ 179 (919)
..|+.+.|.++...... ....|++++.|+|+..---....+..++..+|+|+.|+|+. +.+....-.......+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~---Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS---NRLSNFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc---ccccCCccccchhhhh
Confidence 56788888887665433 34479999999999876455677888999999999999962 2222211112222468
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHH--HHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCE
Q 002459 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV--ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (919)
Q Consensus 180 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~--~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~ 257 (919)
.|+.|.|++| +++...+..+...||+|+.|++.+|..+.-. ...-++.|+.|+|++...++... ......+|.|+.
T Consensus 198 ~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-ccccccccchhh
Confidence 8999999999 8999999999999999999999988533332 22456789999999876665332 344567889999
Q ss_pred EEeeccCCCHHHH-----HHHHhcCcccceecccccC
Q 002459 258 LDVSRTDVGPITI-----SRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 258 L~l~~~~i~~~~l-----~~l~~~~~~L~~L~l~~c~ 289 (919)
|+++.|.+.+-.. .......++|++|+++.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 9988875533222 2223357889999988877
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-06 Score=97.61 Aligned_cols=353 Identities=14% Similarity=0.101 Sum_probs=237.1
Q ss_pred hhcCCCChhHHHHhhcHHHHHHhhcc-CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCH
Q 002459 365 AESNPQGLDDFWLKQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WRE 442 (919)
Q Consensus 365 ~~~~~~~~~~~~~~~gi~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~ 442 (919)
...|-+.+..|-...-||.|+.+|++ .+.+++..|+++|.+|+.--.. ....+++.++||.|++-|.. ..-
T Consensus 197 ~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~-------S~a~vV~~~aIPvl~~kL~~Ieyi 269 (1051)
T KOG0168|consen 197 SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR-------SSAIVVDEHAIPVLLEKLLTIEYI 269 (1051)
T ss_pred hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc-------hhheeecccchHHHHHhhhhhhhh
Confidence 34666677777777789999999965 6699999999999999965443 45678999999999987765 788
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC--cccHHHHHHhcCHHHHHHHHh
Q 002459 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~L~~lL~ 520 (919)
++..+++.+|..|+... -..+.+.|++...+..|.--...+|+.|+.+..|++.. ++.-.-+++ ++|.|..+|+
T Consensus 270 DvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs 345 (1051)
T KOG0168|consen 270 DVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLS 345 (1051)
T ss_pred HHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHh
Confidence 99999999999999732 25678899999999998877788999999999999985 344444444 6899999996
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcC----CcchHHHHhcChHHHHHHHHhcCC---chHHHHHHHHHHHHHhcCCCCCCccc
Q 002459 521 KWSSGGDGVLERAAGALANLAAD----DKCSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNS 593 (919)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~L~~~----~~~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~ 593 (919)
. .+....+.++-++..++.. ++--+++...|.+....+++.-.+ ...+.....+.|..+++. .+...
T Consensus 346 ~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~---~pl~~ 419 (1051)
T KOG0168|consen 346 Y---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG---SPLLF 419 (1051)
T ss_pred h---ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC---ChHHH
Confidence 4 7777888888888888753 233467778888888888876432 122333455666666654 34444
Q ss_pred chhhccchHHHHHHHhCCCC--------------H-HHHHHH------------------------------H-------
Q 002459 594 AVGQEAGALEALVQLTRSPH--------------E-GVRQEA------------------------------A------- 621 (919)
Q Consensus 594 ~~~~~~~~i~~Lv~lL~~~~--------------~-~~~~~a------------------------------~------- 621 (919)
..+...++...|..+|...+ + ++-+.. =
T Consensus 420 ~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~ 499 (1051)
T KOG0168|consen 420 RTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWR 499 (1051)
T ss_pred HHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCc
Confidence 45555555555555543210 0 110000 0
Q ss_pred --------------HHHHhhcCC------------cccHHHHHH-c---------CCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 622 --------------GALWNLSFD------------DRNREAIAA-A---------GGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 622 --------------~~L~~Ls~~------------~~~~~~l~~-~---------g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
+++..+-.+ ...|+.++. + ..++.|++...+ ..++.++...+
T Consensus 500 d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsS--sA~~~VR~kcL 577 (1051)
T KOG0168|consen 500 DDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSS--SANPDVRYKCL 577 (1051)
T ss_pred cccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhc--cCCchhhHHHH
Confidence 011100000 011111111 1 246777888776 58899999999
Q ss_pred HHHHHcccC---cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-Cccc-HHHHHHcCCHHHHHHHHh
Q 002459 666 GALWGLSVS---EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGN-ALRIVEEGGVPALVHLCS 736 (919)
Q Consensus 666 ~~L~~l~~~---~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~-~~~l~~~~~i~~Lv~ll~ 736 (919)
.+|..+..- +..+..+.....-..+-.+|.+.+..|..-|++..--|+. -|+. -..++++|.+-.+-++..
T Consensus 578 ~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 578 SAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 999888742 3333444444555567777888888888888887777765 3332 344566777776666665
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.82 E-value=8.1e-08 Score=96.88 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=71.7
Q ss_pred hcCCCCCEEeeCCCCCCCCCHH---HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh------------hCCCCcEEEe
Q 002459 148 ARHEALESLQLGPDFCERITSD---AVKAIALCCPKLKKLRLSGIRDICGDAINALAK------------LCPNLTDIGF 212 (919)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~i~~~---~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~------------~~~~L~~L~l 212 (919)
..||.|+.|+|+ -+-++.. ++..+.++|.+|+.|.|++| ++...+=..+++ .-|.|+.+..
T Consensus 89 ~~~~~L~~ldLS---DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 89 LGCPKLQKLDLS---DNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred hcCCceeEeecc---ccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 355666666664 2233332 33344455666666666666 555544333222 1245666666
Q ss_pred cCCCCCCH-------HHHhCCCCCCEEeecCCCCCCHHHHHH---HHhcCCCCCEEEeeccCCCHHH---HHHHHhcCcc
Q 002459 213 LDCLNVDE-------VALGNVLSVRFLSVAGTSNMKWGVVSQ---VWHKLPKLVGLDVSRTDVGPIT---ISRLLTSSKS 279 (919)
Q Consensus 213 ~~~~~l~~-------~~l~~~~~L~~L~l~~c~~i~~~~l~~---l~~~~~~L~~L~l~~~~i~~~~---l~~l~~~~~~ 279 (919)
..| .+.+ ..++.++.|+.+.+..+ .|...++.. -+.+||+|+.|||..|-++..+ +...+...++
T Consensus 165 ~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred ecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 555 2333 12345566666666553 233333322 2245666666666665444333 2233334555
Q ss_pred cceecccccCCccchhHHHHH
Q 002459 280 LKVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 280 L~~L~l~~c~~l~~~~~~~~~ 300 (919)
|+.|++++|. +.+.+...+.
T Consensus 243 L~El~l~dcl-l~~~Ga~a~~ 262 (382)
T KOG1909|consen 243 LRELNLGDCL-LENEGAIAFV 262 (382)
T ss_pred heeecccccc-cccccHHHHH
Confidence 6666666665 5555544443
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=8.9e-06 Score=90.09 Aligned_cols=326 Identities=16% Similarity=0.100 Sum_probs=239.7
Q ss_pred CCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcc---
Q 002459 428 GGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEE--- 501 (919)
Q Consensus 428 g~l~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~--- 501 (919)
..|+.|++.+.+. =.+-|+.|+..|-.++ .++|..++.. |+++|++.|.. .|+++...++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 4466777777663 5677888988888887 4566666654 79999999976 589999999999999998653
Q ss_pred ---c-----------HHHHH-HhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC--CcchHHHHhc-ChHHHHHHHH
Q 002459 502 ---H-----------KGAIA-DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALA-GGVHALVMLA 563 (919)
Q Consensus 502 ---~-----------~~~i~-~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~l~~~-g~i~~L~~ll 563 (919)
+ .+.++ ..+-|..++..+.. .+-.++..+...|.++... .+.+..+... -+|..|+.+|
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~---~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE---FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh---hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 12233 34668888888864 6778999999999998864 4556666554 7899999999
Q ss_pred hcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC---CH-HHHHHHHHHHHhhcCC-cccHHHHH
Q 002459 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP---HE-GVRQEAAGALWNLSFD-DRNREAIA 638 (919)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~---~~-~~~~~a~~~L~~Ls~~-~~~~~~l~ 638 (919)
.+.. +.++-.++-.|..|+.. ++..++.+.=+.+++.|..+++.+ +. -|.+.|+..|.||-.+ ..|+..+.
T Consensus 176 ~Dsr-E~IRNe~iLlL~eL~k~---n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 176 RDSR-EPIRNEAILLLSELVKD---NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred hhhh-hhhchhHHHHHHHHHcc---CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 9885 77888899999999987 677888888889999999999764 33 4778899999998776 67799999
Q ss_pred HcCCHHHHHHHHhhcCCCCHH--------H--HHHHHHHHHHcccC-------cchhhHHHhcCChHHHHHHHccC--CH
Q 002459 639 AAGGVEALVVLAQSCSNASPG--------L--QERAAGALWGLSVS-------EANCIAIGREGGVAPLIALARSE--AE 699 (919)
Q Consensus 639 ~~g~i~~Lv~ll~~~~~~~~~--------~--~~~A~~~L~~l~~~-------~~~~~~l~~~g~v~~L~~lL~~~--~~ 699 (919)
+.+.||.|..+|.....++.+ + ...|+.++..+... ..+++.+.+.+++..|..++-++ ..
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 999999999888652223321 1 12455555555532 23456788899999999998665 46
Q ss_pred HHHHHHHHHHHHHcC-CcccHHHHHHcCC----------HHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhH
Q 002459 700 DVHETAAGALWNLAF-NPGNALRIVEEGG----------VPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 700 ~v~~~a~~aL~~l~~-~~~~~~~l~~~~~----------i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
+|+..++.++.++.. +..++..+.+..+ +-.+..+..+.+++..|.+...++.....+..+.-+
T Consensus 332 dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~ 406 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR 406 (970)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH
Confidence 789999999999887 5566766664211 223334455566778899999988766666655544
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.80 E-value=3.4e-07 Score=97.69 Aligned_cols=226 Identities=16% Similarity=0.104 Sum_probs=163.9
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHhhccCcc-cHHHHHHh------cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 471 INILAVLARS--MNRLVAEEAAGGLWNLSVGEE-HKGAIADA------GGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 471 i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~------g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
...++.+|+. .+.++..+.+..+..+..+.+ ....+... ....++++++. .++..+...++.+|..+.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~---~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD---RNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence 5666677754 588999999999999998754 44444431 24678888774 478899999999999999
Q ss_pred cCCcchHHHHhcChHHHHHHHHhcC---CchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-----CC--
Q 002459 542 ADDKCSMEVALAGGVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-----RS-- 611 (919)
Q Consensus 542 ~~~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-----~~-- 611 (919)
........-...+.++.++..+.+. ++.+.+..++.+|.+|.. .+..|..+.+.++++.+..++ .+
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~----~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR----SKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT----SHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC----cchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 8766554443466778888888752 224566889999999998 678899999999999999999 22
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc--hhhHHHhcCChHH
Q 002459 612 PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA--NCIAIGREGGVAP 689 (919)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~--~~~~l~~~g~v~~ 689 (919)
.+..++.+++-++|.|+.+++....+...+.++.|+++++. ...+++...+..++.|+...+. +...++..|+++.
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 35578889999999999999999999999999999999997 4788999999999999998755 7788888777666
Q ss_pred HHHHHcc--CCHHHHHHH
Q 002459 690 LIALARS--EAEDVHETA 705 (919)
Q Consensus 690 L~~lL~~--~~~~v~~~a 705 (919)
+-.+... +|+++.+..
T Consensus 288 l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 288 LQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHSS--SSHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHH
Confidence 6555533 577776543
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.72 E-value=1.5e-06 Score=89.91 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=201.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~ 460 (919)
+..+.+|...+.-+...+...+..++.......... +.-.. ...|...+.+ .+.+....|+++|..+..-++
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~----e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELS----ELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccch----HHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 578889988888888889999999886655443221 11111 2244455555 577778889999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (919)
.|..++...|+..++..+.+ .+-.++...+.++|-|+.++...+.+...+.++.|.++++. +..+.+.+-++.++.
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~--~~KEKV~Rivlai~~ 267 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKE--STKEKVTRIVLAIFR 267 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 99999999999999998843 47789999999999999999888988888999999999984 566788899999999
Q ss_pred HhhcCCc-------chHHHHhcChHHHHHHHHhcC-CchHHHHH-------HHHHHHHHhcCCCC-----------CC--
Q 002459 539 NLAADDK-------CSMEVALAGGVHALVMLARSC-KFEGVQEQ-------AARALANLAAHGDS-----------NS-- 590 (919)
Q Consensus 539 ~L~~~~~-------~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~-------a~~~L~~L~~~~~~-----------~~-- 590 (919)
|+....+ ...+++..+..+.+-.+-... +++++... --.....|++.++- ++
T Consensus 268 Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H 347 (442)
T KOG2759|consen 268 NLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH 347 (442)
T ss_pred HHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc
Confidence 9997552 223555555555544444332 22333221 11111222322100 00
Q ss_pred -------cccchhh--ccchHHHHHHHhCCC-CHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHH
Q 002459 591 -------NNSAVGQ--EAGALEALVQLTRSP-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPG 659 (919)
Q Consensus 591 -------~~~~~~~--~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~ 659 (919)
+|...+. ....+..|+.+|+.. +|.+..-|+.-+....+. ++++..+.+.||=+.+++++.+ .+++
T Consensus 348 k~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh---~d~~ 424 (442)
T KOG2759|consen 348 KSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH---EDPE 424 (442)
T ss_pred cccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC---CCch
Confidence 1222222 345788899999876 477777788888887776 8889999999999999999997 9999
Q ss_pred HHHHHHHHHHHcc
Q 002459 660 LQERAAGALWGLS 672 (919)
Q Consensus 660 ~~~~A~~~L~~l~ 672 (919)
++..|+.++..+-
T Consensus 425 Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 425 VRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-06 Score=89.65 Aligned_cols=186 Identities=24% Similarity=0.199 Sum_probs=151.7
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHH
Q 002459 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAE 467 (919)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~ 467 (919)
.+.+.+-++.|..-|..++..-+ +...+...|++.+++..+++++..+|..|+++++.++. +|.....+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iD--------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDID--------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhh--------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45667888899999999886544 45678999999999999999999999999999999998 9999999999
Q ss_pred hCcHHHHHHHHhcC-CHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc
Q 002459 468 EGGINILAVLARSM-NRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (919)
Q Consensus 468 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~ 545 (919)
.|+++.|+..+.++ +..++..|+.+++.+..+ +.....+...+|...|...+++ ...+..+++.++..+.++.....
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhh
Confidence 99999999999764 566779999999999997 5788999999999999999986 45678889999999999987655
Q ss_pred chHHHHhc-ChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 546 CSMEVALA-GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 546 ~~~~l~~~-g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
....+... +....+..+.... +.++.+.+..++..+..
T Consensus 244 s~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 244 SDEDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 44445554 4444444554444 47888888877766654
No 62
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.8e-05 Score=87.77 Aligned_cols=325 Identities=15% Similarity=0.139 Sum_probs=236.7
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhc
Q 002459 381 AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSV 457 (919)
Q Consensus 381 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~~~~a~~~L~~l~~ 457 (919)
|+.|..-+ ++.-.+-+..|+..|..++.. ++.. +.+.+++++++.|+. .|++....++.++.++..
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srk----------YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRK----------YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHH----------HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 78888888 455588899999999987742 3444 556778999999987 489999999999999875
Q ss_pred Ch-------H----------HHHHHHHh-CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--ccHHHHH-HhcCHHHHH
Q 002459 458 NA-------K----------VAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIA-DAGGVKALV 516 (919)
Q Consensus 458 ~~-------~----------~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~-~~g~i~~L~ 516 (919)
++ + ..+.+++. +-|..++..+...|-.||.+++..|.++.... +.+..+. -.-||..|+
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 32 1 33445544 44889999999999999999999999998863 6666665 457899999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHh-cChHHHHHHHHhcCC---chHHHHHHHHHHHHHhcCCCCCCcc
Q 002459 517 DLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNN 592 (919)
Q Consensus 517 ~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~-~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~ 592 (919)
.+|. +..+.++..++..|..+..+....+.++. +.++..|+.++.... ..-|...|+..|.||-.. +..+
T Consensus 173 dlL~---DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~SN 246 (970)
T KOG0946|consen 173 DLLR---DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NISN 246 (970)
T ss_pred HHHh---hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---Ccch
Confidence 9996 47778899999999999998776655554 689999999998532 124667899999999987 6778
Q ss_pred cchhhccchHHHHHHHhCC---CCH------HHH----HHHHHHHHhhcCC-------cccHHHHHHcCCHHHHHHHHhh
Q 002459 593 SAVGQEAGALEALVQLTRS---PHE------GVR----QEAAGALWNLSFD-------DRNREAIAAAGGVEALVVLAQS 652 (919)
Q Consensus 593 ~~~~~~~~~i~~Lv~lL~~---~~~------~~~----~~a~~~L~~Ls~~-------~~~~~~l~~~g~i~~Lv~ll~~ 652 (919)
+..+.+.+.++.|.++|.. .+. ..| ..++.++..+... ..++..+...+++..|..++.+
T Consensus 247 Q~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 247 QNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH 326 (970)
T ss_pred hhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence 8999999999999988753 231 112 1255555555443 1235678888999999999987
Q ss_pred cCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCC------hHH----HHHHHcc-CCHHHHHHHHHHHHHHcC-CcccH
Q 002459 653 CSNASPGLQERAAGALWGLSVS-EANCIAIGREGG------VAP----LIALARS-EAEDVHETAAGALWNLAF-NPGNA 719 (919)
Q Consensus 653 ~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~------v~~----L~~lL~~-~~~~v~~~a~~aL~~l~~-~~~~~ 719 (919)
+.-+.+++..+.-+++++... ..++..+.+..+ .+. ++.+..+ .....|.+++.++..+.. +.+.+
T Consensus 327 -~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 327 -PGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred -CCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 225678888888888888865 455555554211 112 3333333 456788888888877755 55555
Q ss_pred HHHH
Q 002459 720 LRIV 723 (919)
Q Consensus 720 ~~l~ 723 (919)
..++
T Consensus 406 ~~~l 409 (970)
T KOG0946|consen 406 RKFL 409 (970)
T ss_pred HHHH
Confidence 5554
No 63
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.1e-06 Score=81.55 Aligned_cols=342 Identities=14% Similarity=0.086 Sum_probs=232.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (919)
|.|-.-|..++..++.-++..++.+...++.|. -.....++++|.++.++.....+|.++...|.+.+..++..+..
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtna---VseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNA---VSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhh---HHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 556666778889999999999999998887652 12344567899999999999999999999999999999999988
Q ss_pred HHHHHHhCcHHHH--HHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002459 462 AKAVAEEGGINIL--AVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (919)
Q Consensus 462 ~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (919)
-..+.+....+.+ ..+-..-+.-+|......+..+.+- ++.....-..|.+..|..-+. ...+.-+...+.....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk--GteDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK--GTEDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc--CCcceeehhhHHHHHH
Confidence 8888887665553 3333344666777788888888774 455555556777777777665 3456667778888889
Q ss_pred HhhcCCcchHHHHhcChHHHHHHHHhcCC-chHHHHHHHHHHHHHh----cCCCCCCcccchhhccchHHHHHHHhCCCC
Q 002459 539 NLAADDKCSMEVALAGGVHALVMLARSCK-FEGVQEQAARALANLA----AHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (919)
Q Consensus 539 ~L~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 613 (919)
.|+..+..++.+.+.|.++.+..++...+ +|--.-.+......+- ..+.+.+...+. -.-+++....+++..|
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea--liiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA--LIIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH--HHHHHHhhHHhhhcCC
Confidence 99999999999999999999999987543 2333333443333332 211000000000 0123444456677789
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcCC--HHHH-HHHHhhcCCCCHHHHHHHHHHHHHcccC---cchhh--------
Q 002459 614 EGVRQEAAGALWNLSFDDRNREAIAAAGG--VEAL-VVLAQSCSNASPGLQERAAGALWGLSVS---EANCI-------- 679 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~--i~~L-v~ll~~~~~~~~~~~~~A~~~L~~l~~~---~~~~~-------- 679 (919)
++.++.|..++..+.++.++.+.+...|- ...+ .+.... ....-++.+..+|.+++.. +.++.
T Consensus 318 pdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq---nahakqeaaihaLaaIagelrlkpeqitDgkaeer 394 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ---NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER 394 (524)
T ss_pred chHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc---cccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence 99999999999999999998888877653 2222 333332 2233466777777777731 21111
Q ss_pred ---HHHh-------cCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHH-HcCCHHHHHH
Q 002459 680 ---AIGR-------EGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIV-EEGGVPALVH 733 (919)
Q Consensus 680 ---~l~~-------~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~-~~~~i~~Lv~ 733 (919)
.+.+ -+-...+...++.+.++++..+...+..++..|-....+. +++.|...++
T Consensus 395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 1111 1233446666777789999999999999998887776665 4454444443
No 64
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.4e-06 Score=82.79 Aligned_cols=294 Identities=19% Similarity=0.161 Sum_probs=197.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHH-hCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
..++.+|.+.+|.++..|+..+..++.. ..+..... ...++.+.+++...++ .+.|+.+|.|++.++..+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4689999999999999999999988765 22222111 1237888899887666 778999999999999999999887
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHh-------cChHHHHHHHHhcCCch-HHHHHHHHHHHH
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AGGVHALVMLARSCKFE-GVQEQAARALAN 581 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~-------~g~i~~L~~ll~~~~~~-~~~~~a~~~L~~ 581 (919)
.+..++..+.+ ......+.++..|.|++.+++....+.. .|.+.....+...+-+. .-....+-.+.|
T Consensus 83 -~~k~l~~~~~~---p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 83 -LLKVLMDMLTD---PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred -HHHHHHHHhcC---cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77777777753 4445677788999999998876544332 34444444555544322 222467788889
Q ss_pred HhcCCCCCCcccchhhccchHH--HHHHHhCCCCHHHHH-HHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCH
Q 002459 582 LAAHGDSNSNNSAVGQEAGALE--ALVQLTRSPHEGVRQ-EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASP 658 (919)
Q Consensus 582 L~~~~~~~~~~~~~~~~~~~i~--~Lv~lL~~~~~~~~~-~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~ 658 (919)
|+. .+..|+.+.+...++ .++.+-. .+..+|. ..+++|.|.+.+......+.. ..+..|..+|..
T Consensus 159 ls~----~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlP------ 226 (353)
T KOG2973|consen 159 LSQ----FEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLP------ 226 (353)
T ss_pred Hhh----hhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhh------
Confidence 998 456677776666333 2333333 4556654 588999999999888777766 445555555443
Q ss_pred HHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc-----cCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHH
Q 002459 659 GLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-----SEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVH 733 (919)
Q Consensus 659 ~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ 733 (919)
++..++.... +-..++.=+++|. .+++.++..-+.+|..||.....|..+++.|+-|.+-.
T Consensus 227 ------------lagpee~sEE--dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRE 292 (353)
T KOG2973|consen 227 ------------LAGPEELSEE--DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRE 292 (353)
T ss_pred ------------cCCccccCHH--HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHH
Confidence 2211110000 0012333336663 46799999999999999999999999999888888887
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhCC
Q 002459 734 LCSSSGSKMARFMAALALAYMFDG 757 (919)
Q Consensus 734 ll~~~~~~~~~~~A~~~L~~l~~~ 757 (919)
+=....++.++...-.....+..+
T Consensus 293 lhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 293 LHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhc
Confidence 777666666665544444444443
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.70 E-value=9.8e-07 Score=91.42 Aligned_cols=270 Identities=21% Similarity=0.219 Sum_probs=190.9
Q ss_pred hhHHHHhhcHHHHHHhhccCCH--HHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHH
Q 002459 372 LDDFWLKQGAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEA 448 (919)
Q Consensus 372 ~~~~~~~~gi~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a 448 (919)
++.+...+|...|++|+..++. +++.+|+..|..+... +|.+.+..-| +..++.+-+. ..++.++..
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---------eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~ 242 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---------ENRDRVARIG-LGVILNLAKEREPVELARSV 242 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---------hhhhHHhhcc-chhhhhhhhhcCcHHHHHHH
Confidence 3445556678999999987664 5699999999987743 3466777766 6666666554 578888999
Q ss_pred HHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC--cccHHHHHHhcCHHHHHHHHhccCCC
Q 002459 449 AKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSG 525 (919)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~ 525 (919)
+.+|.+|.. +++.+..+++.||++.++-..+..++.+...++-+|.|++-. .+.+..|++..+-+-|.-+-.+ .
T Consensus 243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s---k 319 (832)
T KOG3678|consen 243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS---K 319 (832)
T ss_pred HHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc---h
Confidence 999999998 788999999999999999999999999999999999999985 4788999999888888888753 6
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 526 GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 526 ~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
++-++.+|+.+.+-++.+.+....+...|.+..+-.++.+-+ +..- +.+. .. -......+-++.|
T Consensus 320 Del~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~F----------ARD~--hd--~aQG~~~d~LqRL 384 (832)
T KOG3678|consen 320 DELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD-PGRF----------ARDA--HD--YAQGRGPDDLQRL 384 (832)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC-cchh----------hhhh--hh--hhccCChHHHHHh
Confidence 788889999999999988888888888877655444554443 3211 1111 00 0122245678889
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcC-C-ccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSF-D-DRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~-~-~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
+.+|.+.--+.+.-++.-++.=+. . .++ ...+.+-|+|+.|-++..+ .+......|-.+|.-+.
T Consensus 385 vPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS---~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 385 VPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASS---PDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHhc
Confidence 999986554444333332222111 1 233 3344556899999998876 55544445555554443
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-06 Score=89.92 Aligned_cols=187 Identities=18% Similarity=0.143 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHH
Q 002459 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVD 517 (919)
Q Consensus 439 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~ 517 (919)
+.+.+-+..|+.-|..+..+-++...+...||..+++..+++.+..+|+.|+++++.++.+ |..++.+.+.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4578889999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCC-cchHHHHhcChHHHHHHHHhcC-CchHHHHHHHHHHHHHhcCCCCCCcccch
Q 002459 518 LIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNNSAV 595 (919)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 595 (919)
.+. .+.+..++..|+.++..+..+. .....+...++...|...+.++ .+...+..++..+..+.....+ ....
T Consensus 174 ~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s---~~d~ 248 (342)
T KOG2160|consen 174 ILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS---DEDI 248 (342)
T ss_pred HHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh---hhhH
Confidence 997 4667788899999999999864 5677888888899999999985 3466778899999999876332 2334
Q ss_pred hhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC
Q 002459 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 596 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (919)
+...+....+..+....+.++++.+..++..+...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 44556666666777777888999988888776554
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.66 E-value=7.1e-06 Score=89.26 Aligned_cols=243 Identities=16% Similarity=-0.015 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHH
Q 002459 427 DGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 427 ~g~l~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
..+++.++..|. .++++++..++.++.... ++ .++..|++.|.+.++.++..++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE-DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC-Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 567889999995 567777766655554222 11 138999999999999999999999987664
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
.+..+.|+.++. +.++.++..++.++.... ....+.+..++.+.+ +.++..++++|..+..
T Consensus 116 ---~~a~~~L~~~L~---~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~- 176 (410)
T TIGR02270 116 ---RQAEPWLEPLLA---ASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHED-ALVRAAALRALGELPR- 176 (410)
T ss_pred ---hHHHHHHHHHhc---CCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCC-HHHHHHHHHHHHhhcc-
Confidence 346788889995 478888888877666522 234568888888775 8999999999998875
Q ss_pred CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
...++.|...+.+.++.+|..|+.++..+... .++..+..+... ........+.
T Consensus 177 -------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~----------~A~~~l~~~~~~---~g~~~~~~l~ 230 (410)
T TIGR02270 177 -------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR----------LAWGVCRRFQVL---EGGPHRQRLL 230 (410)
T ss_pred -------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHhc---cCccHHHHHH
Confidence 25577788889999999999999999777542 235566664443 3334444444
Q ss_pred HHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHH
Q 002459 666 GALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARF 745 (919)
Q Consensus 666 ~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~ 745 (919)
.++... .. ...++.|..+++++. ++..++.+|..+. ...+++.|++.+.+. .++.
T Consensus 231 ~~lal~-~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~---~~aR 285 (410)
T TIGR02270 231 VLLAVA-GG---------PDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP---PWAR 285 (410)
T ss_pred HHHHhC-Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc---HHHH
Confidence 444443 11 146788888988644 9999999999876 356899999998754 3889
Q ss_pred HHHHHHHHhhC
Q 002459 746 MAALALAYMFD 756 (919)
Q Consensus 746 ~A~~~L~~l~~ 756 (919)
.|..++..+..
T Consensus 286 ~A~eA~~~ItG 296 (410)
T TIGR02270 286 LAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhhC
Confidence 99999988764
No 68
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-06 Score=94.49 Aligned_cols=309 Identities=17% Similarity=0.032 Sum_probs=196.7
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-C
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-N 458 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~ 458 (919)
+.|.|.++|.+++...++-|..+|.+++....+.+..+-.. . --.-.+|.++++.+++++.+|..|+.++....- .
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--r-pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--R-PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--C-chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 46889999999999999999999999986543221000000 0 002357899999999999999999999887543 2
Q ss_pred hHHHHHHHHh-CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 459 AKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 459 ~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
.+. .+... .-++.+..+-.+++++||...+.+|..|......+-.-.-.+.++-++... .+.++++.-.|+...
T Consensus 206 ~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t---qd~dE~VALEACEFw 280 (885)
T KOG2023|consen 206 TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT---QDVDENVALEACEFW 280 (885)
T ss_pred cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc---cCcchhHHHHHHHHH
Confidence 211 11111 135666677778999999999999999987532222222233444455554 457788989999999
Q ss_pred HHhhcCCcchHHHHhc--ChHHHHHHHHhcCCc-----------------------------------------------
Q 002459 538 ANLAADDKCSMEVALA--GGVHALVMLARSCKF----------------------------------------------- 568 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~--g~i~~L~~ll~~~~~----------------------------------------------- 568 (919)
..++..+-.+..+... ..+|.|+.-+..++.
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999888665555443 556666653322110
Q ss_pred --------hHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH----hCCCCHHHHHHHHHHHHhhcCCcccHHH
Q 002459 569 --------EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL----TRSPHEGVRQEAAGALWNLSFDDRNREA 636 (919)
Q Consensus 569 --------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~l----L~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 636 (919)
..++.-.+.+|--|+. +.....++.++.+ |.+++..+|+.++-+|..++... -.-
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLan-----------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc--M~g 427 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLAN-----------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC--MQG 427 (885)
T ss_pred ccccccccccHhhccHHHHHHHHH-----------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--hhh
Confidence 0112112222222221 0123344444444 55667789999999999888642 111
Q ss_pred HHHc--CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC---cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHH
Q 002459 637 IAAA--GGVEALVVLAQSCSNASPGLQERAAGALWGLSVS---EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWN 711 (919)
Q Consensus 637 l~~~--g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~---~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~ 711 (919)
++.+ ..++.|+++|.+ ..+-+|.-.+|+|...+.- ++..+.+. ..++.|++.+-+++..|+++|+.+...
T Consensus 428 ~~p~LpeLip~l~~~L~D---KkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 428 FVPHLPELIPFLLSLLDD---KKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFAT 502 (885)
T ss_pred cccchHHHHHHHHHHhcc---CccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2211 247788888887 8889999999999998742 22212221 245566666778899999999999998
Q ss_pred HcC
Q 002459 712 LAF 714 (919)
Q Consensus 712 l~~ 714 (919)
+-.
T Consensus 503 leE 505 (885)
T KOG2023|consen 503 LEE 505 (885)
T ss_pred HHH
Confidence 865
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.5e-09 Score=107.02 Aligned_cols=203 Identities=20% Similarity=0.183 Sum_probs=140.7
Q ss_pred cccccCCCCCCHHHHHHHHHhCCCccEEEecCCccchH--H--HHHcCCCccEEEecCCCC--CCHHHHHHHHhcCCCCC
Q 002459 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS--I--IHLQARNLRELSGDYCRK--ITDATLSVIVARHEALE 154 (919)
Q Consensus 81 ~~l~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~L~~L~l~~c~~--~~~~~l~~l~~~~~~L~ 154 (919)
+.+.++++.+.........+.|++++.|+|+++-+... + +...+|+|+.|+++...- .++.... ...++|+
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK 200 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLK 200 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhhhhhh
Confidence 45556665555544446778899999999999866543 2 334789999999988642 1111111 1467899
Q ss_pred EEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHH---HhCCCCCCE
Q 002459 155 SLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVA---LGNVLSVRF 231 (919)
Q Consensus 155 ~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~---l~~~~~L~~ 231 (919)
.|.|+ .| .++...+..+...||+|+.|.|.++..+...... .+....|++|+|+++..++..- +..+|.|..
T Consensus 201 ~L~l~--~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 201 QLVLN--SC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred eEEec--cC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhh
Confidence 99995 57 7888889999999999999999987432222111 1223569999999997776652 468899999
Q ss_pred EeecCCCCCCH-----HHHHHHHhcCCCCCEEEeeccCC-CHHHHHHHHhcCcccceecccccCCccch
Q 002459 232 LSVAGTSNMKW-----GVVSQVWHKLPKLVGLDVSRTDV-GPITISRLLTSSKSLKVLCALNCPVLEEE 294 (919)
Q Consensus 232 L~l~~c~~i~~-----~~l~~l~~~~~~L~~L~l~~~~i-~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 294 (919)
|+++.|. +++ .+.......+|+|++|+++.|++ ....+..+- .+++|+.|.+.+.. ++-+
T Consensus 276 Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~-ln~e 341 (505)
T KOG3207|consen 276 LNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNY-LNKE 341 (505)
T ss_pred hhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccc-cccc
Confidence 9999873 433 22233346789999999999987 344555543 47889988876555 4433
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=98.62 E-value=4.8e-05 Score=88.87 Aligned_cols=326 Identities=17% Similarity=0.077 Sum_probs=210.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (919)
+..++++.+.+.+++.-.--.+.+++..+.+. . + -++..+.+-+.++++.+|..|++++.++-... .
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-------a--l---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i 137 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-------A--L---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-V 137 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-------H--H---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-H
Confidence 56788888899999888888888876543321 1 1 23456777888899999999999998876422 1
Q ss_pred HHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
-+. .++.+.+.+.+.++-||..|+.++.++-...+ +.+.+.|.++.|.+++. +.++.+..+|+.+|..+.
T Consensus 138 ~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHH
Confidence 111 35677888889999999999999999976432 33445677888999884 589999999999999998
Q ss_pred cCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHH
Q 002459 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAA 621 (919)
Q Consensus 542 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~ 621 (919)
...... .-...+.+..|+..+.+.+ +-.|...+..|.... +..... ....+..+...|++.++.|...|+
T Consensus 208 ~~~~~~-l~l~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~------P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 208 DYGSEK-IESSNEWVNRLVYHLPECN-EWGQLYILELLAAQR------PSDKES--AETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred HhCchh-hHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHhcC------CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 644322 1223455667777776665 556666666664421 111111 246788888889999999999999
Q ss_pred HHHHhhcCCc--ccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCH
Q 002459 622 GALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAE 699 (919)
Q Consensus 622 ~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 699 (919)
+++.+++... +....... ....+++.++ + .++++|..++..|.-+..... .+.... +..+.-. .++..
T Consensus 278 k~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-s---s~~eiqyvaLr~I~~i~~~~P---~lf~~~-~~~Ff~~-~~Dp~ 347 (746)
T PTZ00429 278 KVVANLASRCSQELIERCTV-RVNTALLTLS-R---RDAETQYIVCKNIHALLVIFP---NLLRTN-LDSFYVR-YSDPP 347 (746)
T ss_pred HHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-C---CCccHHHHHHHHHHHHHHHCH---HHHHHH-HHhhhcc-cCCcH
Confidence 9999998652 11111111 1235666664 3 677899888888766664321 122111 2221111 22334
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCC
Q 002459 700 DVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (919)
Q Consensus 700 ~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 757 (919)
.|+...+.+|..|+. +.|...++ ..|.+...+. +...+..++.+++.++..
T Consensus 348 yIK~~KLeIL~~Lan-e~Nv~~IL-----~EL~eYa~d~-D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 348 FVKLEKLRLLLKLVT-PSVAPEIL-----KELAEYASGV-DMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHHHHHHHcC-cccHHHHH-----HHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence 477777777777763 33433333 3455555544 356667777777766643
No 71
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=7.3e-06 Score=81.27 Aligned_cols=271 Identities=19% Similarity=0.153 Sum_probs=184.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHH
Q 002459 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA 462 (919)
Q Consensus 383 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 462 (919)
.+++++++.+|.++..|+.-+..|+....... .-.+...++.+.+++...++ ...|+.+|.|++.++..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~--------~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSL--------SKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhh--------ccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH
Confidence 58999999999999999999988886522111 11233456778888887766 668999999999999999
Q ss_pred HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh------cCHHHHHHHHhccCCCCHHHHHHHHHH
Q 002459 463 KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA------GGVKALVDLIFKWSSGGDGVLERAAGA 536 (919)
Q Consensus 463 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~------g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (919)
+.+.+. -+..++.++-++........+..|.|++..+.....+... .++..++....+.+.....-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 999988 7777778777776677888899999999987544433311 344445544433122222344567889
Q ss_pred HHHhhcCCcchHHHHhcCh--HHHHHHHHhcCCchHHH-HHHHHHHHHHhcCCCCCCcccchhhc--cchHHHHH-----
Q 002459 537 LANLAADDKCSMEVALAGG--VHALVMLARSCKFEGVQ-EQAARALANLAAHGDSNSNNSAVGQE--AGALEALV----- 606 (919)
Q Consensus 537 L~~L~~~~~~~~~l~~~g~--i~~L~~ll~~~~~~~~~-~~a~~~L~~L~~~~~~~~~~~~~~~~--~~~i~~Lv----- 606 (919)
+.||+..+.++..+.+... .+.++.+-. .+ ..++ ...+++|.|.+.. ...+..+.. ...++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~-s~vRr~GvagtlkN~cFd----~~~h~~lL~e~~~lLp~iLlPlag 229 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-ED-SQVRRGGVAGTLKNCCFD----AKLHEVLLDESINLLPAILLPLAG 229 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cc-hhhhccchHHHHHhhhcc----chhHHHHhcchHHHHHHHHhhcCC
Confidence 9999999999888877653 233333333 22 3444 4688999999874 334444433 22233322
Q ss_pred ----------------HHhC-----CCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 607 ----------------QLTR-----SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 607 ----------------~lL~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
+++. .+++.+|..-+.+|..|+....+|+.+...|+.+.+-.+=++ ..++++++..-
T Consensus 230 pee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~--e~ded~~~ace 307 (353)
T KOG2973|consen 230 PEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKW--EEDEDIREACE 307 (353)
T ss_pred ccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcC--CCcHHHHHHHH
Confidence 2332 147889999999999999999999999998887776666554 46666666554
Q ss_pred HHHHHcc
Q 002459 666 GALWGLS 672 (919)
Q Consensus 666 ~~L~~l~ 672 (919)
....-+.
T Consensus 308 ~vvq~Lv 314 (353)
T KOG2973|consen 308 QVVQMLV 314 (353)
T ss_pred HHHHHHH
Confidence 4443333
No 72
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.59 E-value=5.5e-08 Score=122.14 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=19.8
Q ss_pred hCCCccEEEecCCccchHH---HHHcCCCccEEEecCCC
Q 002459 101 RCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCR 136 (919)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~ 136 (919)
.+++|+.|+|+++.+...+ +...+++|++|+++++.
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc
Confidence 4467777777766543221 11245566666666553
No 73
>PTZ00429 beta-adaptin; Provisional
Probab=98.58 E-value=0.00022 Score=83.56 Aligned_cols=323 Identities=15% Similarity=0.044 Sum_probs=208.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
++.+.+.+.+.++-|+..|+.++.++-..+.+ .+.+.|.++.|.++|.+.++.+...|+.+|..+.....
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----------lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----------LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----------cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 45667777888999999999999997654442 24566788899999999999999999999999876321
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L 540 (919)
.+ .-...+.+..|+..+..-++..+...+.+|..- .++..... ...+..+...|+ +.++.|.-.|+.++.++
T Consensus 212 ~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq---~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 212 EK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMS---HQNPAVVMGAIKVVANL 283 (746)
T ss_pred hh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Confidence 11 112233466677777666777777777777542 22221111 124555666664 47789999999999999
Q ss_pred hcCCcchHHHHhc---ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHH
Q 002459 541 AADDKCSMEVALA---GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (919)
Q Consensus 541 ~~~~~~~~~l~~~---g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 617 (919)
....+ . .+.+. ....+++.++ ++ +++++..+++.|..+.... + ..+.. -+..+.- +.++...++
T Consensus 284 ~~~~~-~-~~~~~~~~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~---P---~lf~~--~~~~Ff~-~~~Dp~yIK 350 (746)
T PTZ00429 284 ASRCS-Q-ELIERCTVRVNTALLTLS-RR-DAETQYIVCKNIHALLVIF---P---NLLRT--NLDSFYV-RYSDPPFVK 350 (746)
T ss_pred cCcCC-H-HHHHHHHHHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHC---H---HHHHH--HHHhhhc-ccCCcHHHH
Confidence 75421 1 11111 2235566664 33 3789999999988877631 1 12211 1222211 223445689
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHcc
Q 002459 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARS 696 (919)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~ 696 (919)
...+.+|..|+.. +|-..++ .-|.....+ .+.+.+..+..+++.++.. +.. ...++..|++++..
T Consensus 351 ~~KLeIL~~Lane-~Nv~~IL-----~EL~eYa~d---~D~ef~r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 351 LEKLRLLLKLVTP-SVAPEIL-----KELAEYASG---VDMVFVVEVVRAIASLAIKVDSV-----APDCANLLLQIVDR 416 (746)
T ss_pred HHHHHHHHHHcCc-ccHHHHH-----HHHHHHhhc---CCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHhcC
Confidence 9999999999854 4433332 445566655 7889999999999999964 322 22467788899976
Q ss_pred CCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHH--hcCCCHHHHHHHHHHHHHhhC
Q 002459 697 EAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLC--SSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 697 ~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll--~~~~~~~~~~~A~~~L~~l~~ 756 (919)
+.. +...++.++.++.. +|+ . ..++.|+..+ ..-+.+..|...+|.++..+.
T Consensus 417 ~~~-~v~e~i~vik~IlrkyP~-~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 417 RPE-LLPQVVTAAKDIVRKYPE-L------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred Cch-hHHHHHHHHHHHHHHCcc-H------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 544 44567888888865 343 2 1344555433 223457788888999987653
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.58 E-value=1.3e-05 Score=87.15 Aligned_cols=242 Identities=17% Similarity=-0.001 Sum_probs=176.8
Q ss_pred hcHHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 002459 379 QGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (919)
Q Consensus 379 ~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (919)
.+++.++..| ..+++++...++.++... ++ ..+++.|++.|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~---------------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---ED---------------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC---------------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc
Confidence 3478899999 567778776666555531 11 1137899999999999999999999987663
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
. +..+.|+.+|++.++.++..++.++..-.. ...+.+..+|. +.++.++..|+.+|
T Consensus 116 ~----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~---d~d~~Vra~A~raL 171 (410)
T TIGR02270 116 R----------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALT---HEDALVRAAALRAL 171 (410)
T ss_pred h----------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 2 357889999999999999988888777332 24578888885 58999999999999
Q ss_pred HHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHH
Q 002459 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 617 (919)
..+.. ...++.|...+.+.+ +.++..|+.++..+.. ..++..+..+.........
T Consensus 172 G~l~~----------~~a~~~L~~al~d~~-~~VR~aA~~al~~lG~--------------~~A~~~l~~~~~~~g~~~~ 226 (410)
T TIGR02270 172 GELPR----------RLSESTLRLYLRDSD-PEVRFAALEAGLLAGS--------------RLAWGVCRRFQVLEGGPHR 226 (410)
T ss_pred Hhhcc----------ccchHHHHHHHcCCC-HHHHHHHHHHHHHcCC--------------HhHHHHHHHHHhccCccHH
Confidence 98873 345667777777765 9999999999977653 2556677775544444444
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccC
Q 002459 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE 697 (919)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~ 697 (919)
..+..++... ..+ ..++.|..+++. +.++..++.+++.+-. ...++.|+..+.+.
T Consensus 227 ~~l~~~lal~-~~~---------~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~----------p~av~~L~~~l~d~ 281 (410)
T TIGR02270 227 QRLLVLLAVA-GGP---------DAQAWLRELLQA-----AATRREALRAVGLVGD----------VEAAPWCLEAMREP 281 (410)
T ss_pred HHHHHHHHhC-Cch---------hHHHHHHHHhcC-----hhhHHHHHHHHHHcCC----------cchHHHHHHHhcCc
Confidence 4444444443 211 367888888864 3489999999987543 34789999988744
Q ss_pred CHHHHHHHHHHHHHHcC
Q 002459 698 AEDVHETAAGALWNLAF 714 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~ 714 (919)
.++..|..++..++-
T Consensus 282 --~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 282 --PWARLAGEAFSLITG 296 (410)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 399999999999984
No 75
>PF05536 Neurochondrin: Neurochondrin
Probab=98.55 E-value=8.5e-05 Score=84.53 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=125.8
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-------CCHHHHHHHHHHH
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-------WREGLQSEAAKAI 452 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-------~~~~~~~~a~~~L 452 (919)
.+..-+++|+..+.+-+..+...+.++...++.. ....+.+.++=+.+.+-++|++ +....+..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~----~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDED----SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhh----HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 3567889998888777778888888888765543 2344567788888999999998 3456778899999
Q ss_pred HHhhcChHHHHHHHHhCcHHHHHHHHhcCCH-HHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHH
Q 002459 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (919)
Q Consensus 453 ~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~ 531 (919)
..++.+++.+..---.+-||.|++.+.+.+. .+...|..+|..++..++.+..+.+.|+++.|++.+.+ .+...+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E 157 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQME 157 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHH
Confidence 9999988776443334569999999988766 99999999999999999999999999999999999963 555678
Q ss_pred HHHHHHHHhhcC
Q 002459 532 RAAGALANLAAD 543 (919)
Q Consensus 532 ~a~~~L~~L~~~ 543 (919)
.|+.++.++...
T Consensus 158 ~Al~lL~~Lls~ 169 (543)
T PF05536_consen 158 IALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHh
Confidence 888888888764
No 76
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.53 E-value=7.9e-08 Score=120.71 Aligned_cols=177 Identities=15% Similarity=0.087 Sum_probs=90.5
Q ss_pred hCCCccEEEecCCccchHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCC
Q 002459 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (919)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~ 180 (919)
.+++|++|+++++.+...+.....++|++|++++|. ++.. +......+++|++|+|+ +| .+.......+ ..+++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~--~n-~l~~~~p~~~-~~l~~ 189 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLG--GN-VLVGKIPNSL-TNLTS 189 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCc-cccc-CChHHhcCCCCCEEECc--cC-cccccCChhh-hhCcC
Confidence 456677777766655443333345667777776664 2211 11223446667777774 23 2221111112 23566
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCE
Q 002459 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (919)
Q Consensus 181 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~ 257 (919)
|++|+|++| .++..... -...+++|+.|++++|. ++. ..+..+++|++|++++|. ++.. +...+.++++|++
T Consensus 190 L~~L~L~~n-~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~ 264 (968)
T PLN00113 190 LEFLTLASN-QLVGQIPR-ELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQY 264 (968)
T ss_pred CCeeeccCC-CCcCcCCh-HHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCCCCE
Confidence 777777666 33221111 12334667777776663 332 345666777777777653 2211 1223355677777
Q ss_pred EEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 258 L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
|++++|.++...-.. +..+++|+.|++++|.
T Consensus 265 L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 265 LFLYQNKLSGPIPPS-IFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCeeeccCchh-HhhccCcCEEECcCCe
Confidence 777776543221111 1236677777777765
No 77
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.00012 Score=83.24 Aligned_cols=338 Identities=16% Similarity=0.133 Sum_probs=220.6
Q ss_pred hHHHHHHcCCHHHHHHHHcc-----------CCHH--HHHHHHHHHHHhhcChHHHHHHHHhCc-HHHHHHHHhc-CCHH
Q 002459 420 RAEAVMKDGGIRLLLDLAKS-----------WREG--LQSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARS-MNRL 484 (919)
Q Consensus 420 ~~~~i~~~g~l~~Lv~lL~~-----------~~~~--~~~~a~~~L~~l~~~~~~~~~i~~~g~-i~~Lv~lL~~-~~~~ 484 (919)
|.+.++..|+++.|..+++. +++. +....+.++.-.+.-++.|+.+.+... |.-|+.++.- .-|.
T Consensus 1419 NaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr 1498 (2235)
T KOG1789|consen 1419 NAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPR 1498 (2235)
T ss_pred CHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccH
Confidence 56788999999999998873 1222 334456666666677888988888754 7777777754 3688
Q ss_pred HHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCC----------CCH-------HHHHHHHHHHHHhh---cCC
Q 002459 485 VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS----------GGD-------GVLERAAGALANLA---ADD 544 (919)
Q Consensus 485 ~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~----------~~~-------~~~~~a~~~L~~L~---~~~ 544 (919)
+...|+.++...+.++..+..+.++|++=-|+.+|.++.. .+. +....+..+|..|+ .++
T Consensus 1499 ~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE 1578 (2235)
T KOG1789|consen 1499 LSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADE 1578 (2235)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8899999999999999999999999999888888865321 111 12223444555544 222
Q ss_pred ----cch--HHHHhc------------ChHHHHHHHHhcC-CchH------HHHHHHHHH----HHHhcCCCCCCccc--
Q 002459 545 ----KCS--MEVALA------------GGVHALVMLARSC-KFEG------VQEQAARAL----ANLAAHGDSNSNNS-- 593 (919)
Q Consensus 545 ----~~~--~~l~~~------------g~i~~L~~ll~~~-~~~~------~~~~a~~~L----~~L~~~~~~~~~~~-- 593 (919)
++. ...... .....+++.|.+. +.|. .+..-+..+ .+.+..++....+.
T Consensus 1579 ~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~e 1658 (2235)
T KOG1789|consen 1579 ENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAE 1658 (2235)
T ss_pred ccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccce
Confidence 221 111111 1223333333321 1111 111111111 12222221111000
Q ss_pred --------chh-----------------hc-c-------chHHHHHHHhC--------C-------------------CC
Q 002459 594 --------AVG-----------------QE-A-------GALEALVQLTR--------S-------------------PH 613 (919)
Q Consensus 594 --------~~~-----------------~~-~-------~~i~~Lv~lL~--------~-------------------~~ 613 (919)
+.+ .+ . +.|..+++.+. + +.
T Consensus 1659 F~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs 1738 (2235)
T KOG1789|consen 1659 FEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPT 1738 (2235)
T ss_pred eeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCCh
Confidence 000 00 0 11222222222 0 11
Q ss_pred HHHHHHHHHHHHhhcCC-cccHHHHHH----cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 614 EGVRQEAAGALWNLSFD-DRNREAIAA----AGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~-~~~~~~l~~----~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
++-.+.++.+|.|+... ++-...+.. -|-.+.++.++.. ..++.++..|+.++..+..+.++-..+.+.|.+.
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~--~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC--RKHPKLQILALQVILLATANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH--cCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHH
Confidence 22345688899997554 433332222 2667888888876 5788999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCc
Q 002459 689 PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 760 (919)
.|+.+|++ -|..+..++..|+.|+.+++......+.|++.-+..++..++++++|.+|+..++.|..+...
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 99999986 567889999999999999999999999999999999999998999999999999988766543
No 78
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.5e-06 Score=91.39 Aligned_cols=356 Identities=15% Similarity=0.067 Sum_probs=212.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHH--cCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK--DGGIRLLLDLAKSWREGLQSEAAKAIANLSV-- 457 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~--~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-- 457 (919)
|.|-+.|.+++.-+++.+.-+|+.++.++-.- +.. ...+|.++++|.+..+-+|..++|+|...+.
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g----------~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQG----------FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh----------cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 66666667788889999999999988664421 111 1357888999999999999999999998765
Q ss_pred -ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHH--HhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA--DAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 458 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
.++ +....+ ..+..|++.+-+.+..|++.|+.++.-+-.+- ...++ -.-.+..|+..+..+...+--+...|.
T Consensus 466 ~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 466 VQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred hcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHH
Confidence 222 322221 13445555555689999999999988776531 11111 112355566666666677777888888
Q ss_pred HHHHHhhcCCcchHHHHhcChHHHHHHH---HhcCCchHHHHHHHHHHHHHhcCCC-CC-Ccccchh-hccchHHHHHHH
Q 002459 535 GALANLAADDKCSMEVALAGGVHALVML---ARSCKFEGVQEQAARALANLAAHGD-SN-SNNSAVG-QEAGALEALVQL 608 (919)
Q Consensus 535 ~~L~~L~~~~~~~~~l~~~g~i~~L~~l---l~~~~~~~~~~~a~~~L~~L~~~~~-~~-~~~~~~~-~~~~~i~~Lv~l 608 (919)
++|+.-..+.-++.+-++ -.+|+|++- +.+++ .+ ...-+.+|..++..-. .. +...... +.-..++.-++.
T Consensus 542 gtlAdsvg~~Ln~~~Yiq-iLmPPLi~KW~~lsd~D-Kd-LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~ 618 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQ-ILMPPLIEKWELLSDSD-KD-LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQL 618 (885)
T ss_pred HHHHHHHHHhcCcHHHHH-HhccHHHHHHHhcCccc-ch-HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Confidence 888876654434333211 135666653 33332 33 2334444444433100 00 0111111 111222222222
Q ss_pred hCC---------CCHHHHHHHHHHHHhhcCC-ccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--c
Q 002459 609 TRS---------PHEGVRQEAAGALWNLSFD-DRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--E 675 (919)
Q Consensus 609 L~~---------~~~~~~~~a~~~L~~Ls~~-~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~--~ 675 (919)
+.. ++.+....++..+..|+.. ..+ ...+..++....+...+++ .-+++|..|-..|+.++.. +
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D---~~peVRQS~FALLGDltk~c~~ 695 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD---EVPEVRQSAFALLGDLTKACFE 695 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHH
Confidence 211 2334444567777777766 333 4555666777888888887 8999999999999998753 1
Q ss_pred chhhHHHhcCChHHHHHHH----ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCH-HHHHHHHHH
Q 002459 676 ANCIAIGREGGVAPLIALA----RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSK-MARFMAALA 750 (919)
Q Consensus 676 ~~~~~l~~~g~v~~L~~lL----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~-~~~~~A~~~ 750 (919)
.. .+.+..++.++ ....-.+..+|++|++.++..-....+..-...+..|+.+++..+.+ .+-++.+.+
T Consensus 696 ~v------~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAIT 769 (885)
T KOG2023|consen 696 HV------IPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAIT 769 (885)
T ss_pred hc------cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhh
Confidence 11 12223333333 23345688999999999986322221122224566777787776544 578888999
Q ss_pred HHHhhCCCCchhH
Q 002459 751 LAYMFDGRMDEFA 763 (919)
Q Consensus 751 L~~l~~~~~~~~~ 763 (919)
++.|+.-+++.++
T Consensus 770 IGrLg~~~Pe~vA 782 (885)
T KOG2023|consen 770 IGRLGYICPEEVA 782 (885)
T ss_pred hhhhhccCHHhcc
Confidence 9998888776543
No 79
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.43 E-value=0.00015 Score=78.94 Aligned_cols=248 Identities=26% Similarity=0.233 Sum_probs=160.6
Q ss_pred hcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 002459 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (919)
Q Consensus 379 ~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 458 (919)
..++.+++.+.+.+..++..|+..++. +...-+++.+..++.+.++.+|..|+.+|+.+...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~------------------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGE------------------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhh------------------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh
Confidence 346789999988899999999999776 34456788999999999999999999988887743
Q ss_pred hHHHHHHHHhCcHHHHHHHHh-cCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCH----------
Q 002459 459 AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD---------- 527 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~---------- 527 (919)
. .++.++.++. +++..++..+..+|..+... .++.+++..+.+ ...
T Consensus 105 ~----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~---~~~~~a~~~~~~~ 161 (335)
T COG1413 105 E----------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQD---EDSGSAAAALDAA 161 (335)
T ss_pred h----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhcc---chhhhhhhhccch
Confidence 3 6899999998 58999999999999999864 257888888853 221
Q ss_pred --HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 528 --GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 528 --~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
.++..+...|..+. +...++.+..++.+.. ..++..++.+|..+.... ....+.+
T Consensus 162 ~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~------------~~~~~~l 218 (335)
T COG1413 162 LLDVRAAAAEALGELG----------DPEAIPLLIELLEDED-ADVRRAAASALGQLGSEN------------VEAADLL 218 (335)
T ss_pred HHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch------------hhHHHHH
Confidence 12333333333322 2234566666666655 566677777776666421 2445666
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcC
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREG 685 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g 685 (919)
...+..++..++..++.+|..+... ..+..+...+.. .+..++..+...+..+ ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~----------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALED---EDVILALLAAAALGAL----------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhc---cchHHHHHHHHHhccc----------Cchh
Confidence 6666666777777666666665433 234555566654 5555555444444311 0111
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 686 GVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 686 ~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
....+...+.+....++..+..++....
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2344455555555556666655555544
No 80
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.42 E-value=4.1e-07 Score=114.57 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=40.5
Q ss_pred CCCCcEEEecCCCCCCHHH-HhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCcccce
Q 002459 204 CPNLTDIGFLDCLNVDEVA-LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (919)
Q Consensus 204 ~~~L~~L~l~~~~~l~~~~-l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 282 (919)
+++|+.|++++|..++... ...+++|++|++++|..+.. +....++|+.|++++|.++. +..-+..+++|+.
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~ 873 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSF 873 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-----ccccccccCEeECCCCCCcc--ChHHHhcCCCCCE
Confidence 3444444444443333210 01344455555555543321 11122456666666654431 2222345777888
Q ss_pred ecccccCCccchh
Q 002459 283 LCALNCPVLEEEN 295 (919)
Q Consensus 283 L~l~~c~~l~~~~ 295 (919)
|++++|+.++...
T Consensus 874 L~L~~C~~L~~l~ 886 (1153)
T PLN03210 874 LDMNGCNNLQRVS 886 (1153)
T ss_pred EECCCCCCcCccC
Confidence 8888887776543
No 81
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=5.8e-06 Score=71.27 Aligned_cols=132 Identities=19% Similarity=0.172 Sum_probs=111.0
Q ss_pred chHHHHHHHhCC-CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchh
Q 002459 600 GALEALVQLTRS-PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (919)
Q Consensus 600 ~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 678 (919)
+-++.|+.-... .+.+.++....-|.|.+.++-+=..+.+..+++.++.-+.. .++.+.+.+.+.|+|+|.++.+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e---~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE---QNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc---ccHHHHHHhHHHHHhhccChHHH
Confidence 445666655543 58889999999999999999999999999999999999987 89999999999999999999999
Q ss_pred hHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHH
Q 002459 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHL 734 (919)
Q Consensus 679 ~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~l 734 (919)
+.|.++++++.++..+.++.+.+...|+.+|..|+. ....++.+.....+..+...
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 999999999999999999999999999999999987 33455555554444444433
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=7.5e-06 Score=70.62 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=112.6
Q ss_pred cCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHH
Q 002459 427 DGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 427 ~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
-+++..||.-... .+.+.+.+...-|+|.+.||-+-..+.+...++..+.-|..+|..+.+.+++.|+|++-++.+...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 4567777776665 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc-chHHHHhcChHHHHHHHH
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLA 563 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~l~~~g~i~~L~~ll 563 (919)
|.++++++.++..+. ++.+.+...++.++..|+.... .+..+.....+..+.+.-
T Consensus 95 I~ea~g~plii~~ls---sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 95 IREALGLPLIIFVLS---SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHhcCCceEEeecC---CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999984 5888888899999999986553 345554444444444443
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00011 Score=83.55 Aligned_cols=286 Identities=19% Similarity=0.170 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhhc-ChHHHHHHHHh----CcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHH
Q 002459 445 QSEAAKAIANLSV-NAKVAKAVAEE----GGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL 518 (919)
Q Consensus 445 ~~~a~~~L~~l~~-~~~~~~~i~~~----g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~l 518 (919)
...++.+|.|+.. +++....+... |-.+.+...++. .++.++..|+.++..++.+.++...++..|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 3468999999765 88776665433 556777777765 68899999999999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhh-
Q 002459 519 IFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ- 597 (919)
Q Consensus 519 L~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~- 597 (919)
|- ..+..++.++.+|..|+.+++...+-.+.|++..+..++...+.+..+..++..+..|....-..+..+..++
T Consensus 1822 LH----S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1822 LH----SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred Hh----cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 94 5677899999999999999999888889999999998888777788888888888888765311111111110
Q ss_pred ----------c---------------------------------------------------------------------
Q 002459 598 ----------E--------------------------------------------------------------------- 598 (919)
Q Consensus 598 ----------~--------------------------------------------------------------------- 598 (919)
.
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 0
Q ss_pred ------------------------cchHHHHHHHhCCCCHH--HHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHh
Q 002459 599 ------------------------AGALEALVQLTRSPHEG--VRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQ 651 (919)
Q Consensus 599 ------------------------~~~i~~Lv~lL~~~~~~--~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~ 651 (919)
.+.++.+..++...+++ ....-..++..|-+. +.-.+.+-..|.+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 00111222222221111 111112222222221 222333334477788887776
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHH
Q 002459 652 SCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVP 729 (919)
Q Consensus 652 ~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~~~i~ 729 (919)
. .+..+-..|..+|..++.+.-+..++.+...+.+++..+... +...--|+.+|..+.. ..+......+.|.||
T Consensus 2058 ~---~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2058 L---QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred h---cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence 5 333344678999999999999999999988888898888643 3444578889988875 233445566899999
Q ss_pred HHHHHHhcC
Q 002459 730 ALVHLCSSS 738 (919)
Q Consensus 730 ~Lv~ll~~~ 738 (919)
.|+++|...
T Consensus 2134 yLL~LLd~~ 2142 (2235)
T KOG1789|consen 2134 YLLQLLDSS 2142 (2235)
T ss_pred HHHHHhccc
Confidence 999999764
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.28 E-value=0.00018 Score=78.34 Aligned_cols=253 Identities=26% Similarity=0.232 Sum_probs=185.7
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHH
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 507 (919)
..++.+++.+.+.+..++..++..++.+.... .++.+..++.+.++.++..|+.+|+++-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~----------av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE----------AVPLLRELLSDEDPRVRDAAADALGELGDP-------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH----------HHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence 46788999999999999999999977766333 689999999999999999999988888753
Q ss_pred HhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC---------ch--HHHHHHH
Q 002459 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK---------FE--GVQEQAA 576 (919)
Q Consensus 508 ~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~---------~~--~~~~~a~ 576 (919)
..++.|+.++.+ +.+..++..++.+|..+- +...+..++..+.+.. .+ .++..+.
T Consensus 105 --~a~~~li~~l~~--d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 --EAVPPLVELLEN--DENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred --hHHHHHHHHHHc--CCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 378999999973 588899999999998876 2334777777777543 11 3455566
Q ss_pred HHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCC
Q 002459 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNA 656 (919)
Q Consensus 577 ~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 656 (919)
.+|..+.. ...++.+...+...+..+|..|+.+|..+..+. ....+.+...+.+ .
T Consensus 171 ~~l~~~~~--------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~ 225 (335)
T COG1413 171 EALGELGD--------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---E 225 (335)
T ss_pred HHHHHcCC--------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---C
Confidence 66655542 466788889998888899999999999887664 2345667777776 8
Q ss_pred CHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHh
Q 002459 657 SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCS 736 (919)
Q Consensus 657 ~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~ 736 (919)
+..++..++.+|+.+.... .+..+...+.+.+..++..+..++...- .......+...+.
T Consensus 226 ~~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~ 285 (335)
T COG1413 226 SLEVRKAALLALGEIGDEE----------AVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLI 285 (335)
T ss_pred CHHHHHHHHHHhcccCcch----------hHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhh
Confidence 8899999999887754332 5677888888888777766666665211 1233445555555
Q ss_pred cCCCHHHHHHHHHHHHHhhCCC
Q 002459 737 SSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 737 ~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
+. ...++..++.++.......
T Consensus 286 ~~-~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 286 DE-ANAVRLEAALALGQIGQEK 306 (335)
T ss_pred cc-hhhHHHHHHHHHHhhcccc
Confidence 44 3667888888887665543
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00036 Score=75.27 Aligned_cols=288 Identities=18% Similarity=0.124 Sum_probs=200.3
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L 537 (919)
.++.+..+.-..-.+.+..++-+++.+++..+.+++..+..+++.-..+.+.+.--.++.-|.. ...+..-++.|...+
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkli 92 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLI 92 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHH
Confidence 3334444333333444444555556999999999999999999888888888766666677765 445566778899888
Q ss_pred HHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHH
Q 002459 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 617 (919)
..+..-.++...+ ..|.+..++.+..+.+ +..+..|..+|..++.. + -..+...|++..|++.+-++..++.
T Consensus 93 R~~l~~~~~~~~~-~~~vvralvaiae~~~-D~lr~~cletL~El~l~---~---P~lv~~~gG~~~L~~~l~d~~~~~~ 164 (371)
T PF14664_consen 93 RAFLEIKKGPKEI-PRGVVRALVAIAEHED-DRLRRICLETLCELALL---N---PELVAECGGIRVLLRALIDGSFSIS 164 (371)
T ss_pred HHHHHhcCCcccC-CHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHhh---C---HHHHHHcCCHHHHHHHHHhccHhHH
Confidence 8887654332222 4577899999999876 67889999999999975 2 2466789999999999877766788
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhc----CCCCH--HHHHHHHHHHHHcccCcchhhHHHhc--CChHH
Q 002459 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSC----SNASP--GLQERAAGALWGLSVSEANCIAIGRE--GGVAP 689 (919)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~--~~~~~A~~~L~~l~~~~~~~~~l~~~--g~v~~ 689 (919)
+..+.++..+-..+..|..+...-.++.++.-+.+. ...+. +.-..+..++..+-.+-..--.+... .+++.
T Consensus 165 ~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lks 244 (371)
T PF14664_consen 165 ESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKS 244 (371)
T ss_pred HHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHH
Confidence 889999999998888888887655666666666542 11222 23344555555554443332222222 47888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcC--CcccH------------------------------------------------
Q 002459 690 LIALARSEAEDVHETAAGALWNLAF--NPGNA------------------------------------------------ 719 (919)
Q Consensus 690 L~~lL~~~~~~v~~~a~~aL~~l~~--~~~~~------------------------------------------------ 719 (919)
|+..|.-+.++++...+..+..+-. .|++.
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a 324 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA 324 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH
Confidence 9999999999999999999988753 11100
Q ss_pred ---HHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 720 ---LRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 720 ---~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
..+++.|.++.|++++.+..++.+...|...|+.+
T Consensus 325 Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 325 LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 01346788888888888775567777777776643
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=0.00049 Score=75.62 Aligned_cols=339 Identities=15% Similarity=0.075 Sum_probs=215.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
|..+.+-+....+++|.....+|..+....... ......+.+.+++.+.+...+..++..++.+..+.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----------~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~- 165 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----------SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL- 165 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----------CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-
Confidence 467888888999999999999998876443321 22334567888888888888999999988887643
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHH-HHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEE-AAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (919)
.-..+.+.+.+..+-..+++.+...++. +.-+....... -....+...++.+-.++.+..+....++..|..+...
T Consensus 166 ~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~---Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 166 GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN---LGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh---cCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 3344556677888888887754444333 22222111111 0122345566777777776666778888877776665
Q ss_pred hhcC--CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHH
Q 002459 540 LAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (919)
Q Consensus 540 L~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 617 (919)
+-.. ....+. .++.++.-+.... ...+..++..+..++.. ...+-...-..++|.+...|.+..+++|
T Consensus 243 i~~~~~~~aVK~-----llpsll~~l~~~k-WrtK~aslellg~m~~~----ap~qLs~~lp~iiP~lsevl~DT~~evr 312 (569)
T KOG1242|consen 243 IMRCLSAYAVKL-----LLPSLLGSLLEAK-WRTKMASLELLGAMADC----APKQLSLCLPDLIPVLSEVLWDTKPEVR 312 (569)
T ss_pred HHHhcCcchhhH-----hhhhhHHHHHHHh-hhhHHHHHHHHHHHHHh----chHHHHHHHhHhhHHHHHHHccCCHHHH
Confidence 5431 111111 2344444333332 45667888888888874 3334455578899999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHH---
Q 002459 618 QEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA--- 694 (919)
Q Consensus 618 ~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL--- 694 (919)
..+..+|..++.-.++.... ..++.|++.+.+ ++.. ...+...|+.-.... .++.-.+..++.+|
T Consensus 313 ~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~d---p~~~-~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 313 KAGIETLLKFGSVIDNPDIQ---KIIPTLLDALAD---PSCY-TPECLDSLGATTFVA-----EVDAPSLALMVPILKRG 380 (569)
T ss_pred HHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcC---cccc-hHHHHHhhcceeeee-----eecchhHHHHHHHHHHH
Confidence 99999999998776654421 246788888865 3222 223444443332211 11122334444444
Q ss_pred -ccCCHHHHHHHHHHHHHHcCCcccHHHHHH--cCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCC
Q 002459 695 -RSEAEDVHETAAGALWNLAFNPGNALRIVE--EGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (919)
Q Consensus 695 -~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 757 (919)
...+..+++.++.+..||+.--++...+.. ...+|.|-..+.+. .|++|..|+.+|+.+..+
T Consensus 381 l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 381 LAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLER 445 (569)
T ss_pred HhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHH
Confidence 445677889999999999874433333322 24577777777777 589999999999766543
No 87
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00031 Score=70.23 Aligned_cols=318 Identities=14% Similarity=0.064 Sum_probs=209.5
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-h--HHH--HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVN-A--KVA--KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~--~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 502 (919)
+..+.|-.-|..++..++..++..++.+..+ + ..- ..++..|.++.++..+..+|.++...|...+..++..+..
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 4445555566678999999999999988762 2 222 2344677899999999999999999999999999999988
Q ss_pred HHHHHHhcCHHHHH--HHHhccCCCCHHHHHHHHHHHHHhhc-CCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHH
Q 002459 503 KGAIADAGGVKALV--DLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL 579 (919)
Q Consensus 503 ~~~i~~~g~i~~L~--~lL~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 579 (919)
-+.+.+....+.+- .+-- .-++-++..+...+..+.. +++.....-..|.+..|..-+....+.-+..++....
T Consensus 162 leaiFeSellDdlhlrnlaa---kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAA---KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHhcccccCChHHHhHHHh---hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 88888877665543 2221 2455567777777777765 4455556666788888888888766677788889888
Q ss_pred HHHhcCCCCCCcccchhhccchHHHHHHHhCCC--CHHHHHHHH----HHHHhhcCCcccHHHHHHc--CCHHHHHHHHh
Q 002459 580 ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQEAA----GALWNLSFDDRNREAIAAA--GGVEALVVLAQ 651 (919)
Q Consensus 580 ~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~----~~L~~Ls~~~~~~~~l~~~--g~i~~Lv~ll~ 651 (919)
..|+. .+-.++.+...|.++.+-+++... +|--+-.+. +.+.+.+..+-..+.+.+. -+++...+++.
T Consensus 239 teLae----teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 239 TELAE----TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHH----HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 88887 344567778889999998888653 332222233 3333333322222233222 23455566666
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCC--hHHHH-HHHccCCHHHHHHHHHHHHHHcC---CcccHH-----
Q 002459 652 SCSNASPGLQERAAGALWGLSVSEANCIAIGREGG--VAPLI-ALARSEAEDVHETAAGALWNLAF---NPGNAL----- 720 (919)
Q Consensus 652 ~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~--v~~L~-~lL~~~~~~v~~~a~~aL~~l~~---~~~~~~----- 720 (919)
. .++..++.|..+++-+..+.+..+.+.+.|- .+.++ +........-++.++.+|.+++. .++++.
T Consensus 315 m---nDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgka 391 (524)
T KOG4413|consen 315 M---NDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKA 391 (524)
T ss_pred c---CCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHH
Confidence 6 8899999999999999999888877777653 23333 33333334456667777777764 222221
Q ss_pred --HH----H----H---cCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 721 --RI----V----E---EGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 721 --~l----~----~---~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
.+ . + ..-......+++.+ .++++.+|...+..++.
T Consensus 392 eerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 392 EERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHc
Confidence 11 1 1 12244455555544 47788888877766653
No 88
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.25 E-value=1.1e-06 Score=61.75 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=37.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccc
Q 002459 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSS 82 (919)
Q Consensus 43 LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~ 82 (919)
||+|++..||.+++..|+.+++.|||+|+.+..++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999998888864
No 89
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=6.5e-05 Score=80.49 Aligned_cols=350 Identities=14% Similarity=0.116 Sum_probs=218.6
Q ss_pred HHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 002459 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (919)
Q Consensus 376 ~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (919)
+.++-+++.+..+++.+..++..|++.+.+++....... ...-......+-++....+..++ .+++.|-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--------~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRL 151 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--------LVYFNEIFDVLCKLSADSDQNVR-GGAELLDRL 151 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--------ccchHHHHHHHHHHhcCCccccc-cHHHHHHHH
Confidence 455667888888899999999999999999886544321 11122333455555555555554 555665555
Q ss_pred hcChHHHHHHHHhC---cHHHHHHHHhc----CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHH
Q 002459 456 SVNAKVAKAVAEEG---GINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (919)
Q Consensus 456 ~~~~~~~~~i~~~g---~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 528 (919)
..+ .+.+.. .++.++.+|+. .++..|...+.-|..|-..|+....=.-....+-|+.+|. +.+++
T Consensus 152 ikd-----IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls---D~s~e 223 (675)
T KOG0212|consen 152 IKD-----IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS---DSSDE 223 (675)
T ss_pred HHH-----hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc---CCcHH
Confidence 431 111121 26666666654 6889999998888888776543222112234555667774 57788
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHh-cChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH
Q 002459 529 VLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (919)
Q Consensus 529 ~~~~a~~~L~~L~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~ 607 (919)
++..+-.++.+....-.+.....+ ...++.++.-+.+++ +.++..|..-+.....-+ ...-...-.|++..++.
T Consensus 224 Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~----g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 224 VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIP----GRDLLLYLSGILTAILP 298 (675)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCC----Ccchhhhhhhhhhhccc
Confidence 887776666555432222222212 246778888888876 889988887777776542 22334445677777888
Q ss_pred HhCCCCH-HHHHHHHH---HHHhhcCCcccHHHHHHcC-CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHH
Q 002459 608 LTRSPHE-GVRQEAAG---ALWNLSFDDRNREAIAAAG-GVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG 682 (919)
Q Consensus 608 lL~~~~~-~~~~~a~~---~L~~Ls~~~~~~~~l~~~g-~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~ 682 (919)
++.+.++ .+++.+.. .|..+...+...+. ++.| .++.+.+.+.+ ...+.+..++.-+..+-....++-...
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~l~~~~p~ql~~h 374 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD---DREETRIAVLNWIILLYHKAPGQLLVH 374 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhhCcchhhhh
Confidence 8776655 35554432 23334333322222 3332 46777777776 888999999888888876666655555
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 683 REGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 683 ~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.....+.|++-|.+.+.+|...++..+.++|.+++.... -..+..|+++.... ....+..+...++.++
T Consensus 375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED-TKLLEVRGNLIIRQLC 443 (675)
T ss_pred ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh-hHHHHhhhhHHHHHHH
Confidence 667888999999999999999999999999986654311 11223444444433 2456666666666554
No 90
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.23 E-value=2.5e-07 Score=67.65 Aligned_cols=43 Identities=35% Similarity=0.681 Sum_probs=36.6
Q ss_pred CcCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCcc
Q 002459 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWS 81 (919)
Q Consensus 39 ~~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~ 81 (919)
+|.+||+|++.+||++|+..|+.+++.|||+|+.++.++..|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 4788999999999999999999999999999999998877664
No 91
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00045 Score=72.14 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=195.8
Q ss_pred hhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccc--hhhHHHHHHcCCHHHHHHHHccCC
Q 002459 364 TAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASID--CGRAEAVMKDGGIRLLLDLAKSWR 441 (919)
Q Consensus 364 ~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~i~~~g~l~~Lv~lL~~~~ 441 (919)
.....|+-+..+....|++.|+.+|.+++.++.......|..|+..|--.-+.+ ..-..++++.+.++.|++-+..-|
T Consensus 110 vlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd 189 (536)
T KOG2734|consen 110 VLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD 189 (536)
T ss_pred hhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 335567777788889999999999999999999999999999986554332222 235667888999999998887644
Q ss_pred HHHH------HHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCc-ccHHHHHHhcC
Q 002459 442 EGLQ------SEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGG 511 (919)
Q Consensus 442 ~~~~------~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~ 511 (919)
+.++ ..++.++-|+.. .++....+++.|-+.-|+.-+.. .-.....+|..+|.-+..+. +++.....-+|
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 4433 457778888776 89999999999777766664432 45567788999999998875 58888889999
Q ss_pred HHHHHHHHhccCCC------CHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 512 VKALVDLIFKWSSG------GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 512 i~~L~~lL~~~~~~------~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
+..+++-+.-+... ..+..++...+|+.+...++++..+....+++.+.-+++.. ...+..+.++|-....+
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g 347 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFG 347 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhC
Confidence 99998876432212 24567777888888888999999999998998888888763 45677899999999887
Q ss_pred CCCCCcccchhhccchHHHHHHHhC-C---------CCHHHHHHHHHHHHhhcCC
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTR-S---------PHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~-~---------~~~~~~~~a~~~L~~Ls~~ 630 (919)
++. ..+...+++..++..+..++- . ...+.-++.+..|+.+-.+
T Consensus 348 ~~g-t~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 348 PEG-TPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred CCc-hHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 553 345666677777777776543 1 1234556677777766543
No 92
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.17 E-value=1.1e-06 Score=94.22 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=45.9
Q ss_pred HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCC---CHHHHHHHHhcCcccceecccccCCccchh--
Q 002459 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV---GPITISRLLTSSKSLKVLCALNCPVLEEEN-- 295 (919)
Q Consensus 221 ~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i---~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~-- 295 (919)
..|..|.++++|+|+.+ +++... ....-++..|+.|++|+|.| ..++.. .|++|+.|+|+++. |+.-.
T Consensus 263 G~Fy~l~kme~l~L~~N-~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~Ws----ftqkL~~LdLs~N~-i~~l~~~ 335 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETN-RLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWS----FTQKLKELDLSSNR-ITRLDEG 335 (873)
T ss_pred cceeeecccceeecccc-hhhhhh-cccccccchhhhhccchhhhheeecchhh----hcccceeEeccccc-cccCChh
Confidence 33445566666666653 232111 11123567788888888754 233333 38889999998875 44322
Q ss_pred HHHHHhhhhhhhhhhc
Q 002459 296 NISAVKSKGKLLLALF 311 (919)
Q Consensus 296 ~~~~~~~~~~l~l~~~ 311 (919)
-+...+++..+.++.+
T Consensus 336 sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHN 351 (873)
T ss_pred HHHHHHHhhhhccccc
Confidence 1223356666666543
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.17 E-value=0.0015 Score=70.45 Aligned_cols=305 Identities=15% Similarity=0.131 Sum_probs=198.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN 458 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~ 458 (919)
++.+..++-+++.+++..+.+++..+..+. .....+.+.+.--.++..|..+ +..-|.+|++.++.+..-
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~--------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDE--------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 455555554445999999999998877542 3466777777777777777764 556788999999987653
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (919)
++..+. .-.|.+..++.+..++++..+..|..+|..++-. +.+.+...||+..|++.+-. +..++.+..+.++.
T Consensus 99 ~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL 172 (371)
T PF14664_consen 99 KKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID---GSFSISESLLDTLL 172 (371)
T ss_pred cCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHH
Confidence 222222 2445688999999999999999999999999984 45778899999999999863 55558888999999
Q ss_pred HhhcCCcchHHHHhcChHHHHHHHHhcC------Cch--HHHHHHHHHHHHHhcCCCCCCcccchhhc--cchHHHHHHH
Q 002459 539 NLAADDKCSMEVALAGGVHALVMLARSC------KFE--GVQEQAARALANLAAHGDSNSNNSAVGQE--AGALEALVQL 608 (919)
Q Consensus 539 ~L~~~~~~~~~l~~~g~i~~L~~ll~~~------~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~--~~~i~~Lv~l 608 (919)
++...+..+..+...--+..++.-+.+. ++. +....+..++..+-. ++..-..+.. ..+++.|+..
T Consensus 173 ~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr----sW~GLl~l~~~~~~~lksLv~~ 248 (371)
T PF14664_consen 173 YLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR----SWPGLLYLSMNDFRGLKSLVDS 248 (371)
T ss_pred HHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh----cCCceeeeecCCchHHHHHHHH
Confidence 9999998888776654455555444332 122 344566777766655 3333333322 3689999999
Q ss_pred hCCCCHHHHHHHHHHHHhhcCCccc--------HHHHHHcCCHHHHHHHH---h-------hcCCCCHHHHHHHHHHHHH
Q 002459 609 TRSPHEGVRQEAAGALWNLSFDDRN--------REAIAAAGGVEALVVLA---Q-------SCSNASPGLQERAAGALWG 670 (919)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~~~--------~~~l~~~g~i~~Lv~ll---~-------~~~~~~~~~~~~A~~~L~~ 670 (919)
|..+++++|......+..+-.-+.- .......|-+..--++- . ........+...=.+.+
T Consensus 249 L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLl-- 326 (371)
T PF14664_consen 249 LRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALL-- 326 (371)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHH--
Confidence 9999999999999998876442110 11111112110000110 0 00000011111111111
Q ss_pred cccCcchhhHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHH
Q 002459 671 LSVSEANCIAIGREGGVAPLIALARSE-AEDVHETAAGALWNL 712 (919)
Q Consensus 671 l~~~~~~~~~l~~~g~v~~L~~lL~~~-~~~v~~~a~~aL~~l 712 (919)
-..+.+.|.++.|+++..+. ++.+...|.-.|..+
T Consensus 327 -------l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 327 -------LAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred -------HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 12567899999999999876 777888887777765
No 94
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=2.9e-06 Score=106.92 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=38.3
Q ss_pred CCCccEEEecCCccchHHHH-HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCC
Q 002459 102 CMNLQKLRFRGAESADSIIH-LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (919)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~ 180 (919)
+++|+.|+|+++.....+.. ..+++|+.|++.+|..+.. +..-...+++|+.|+++ +|..+..-.. ...+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~--~c~~L~~Lp~---~i~l~s 705 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMS--RCENLEILPT---GINLKS 705 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCC--CCCCcCccCC---cCCCCC
Confidence 45566666655432221111 1345666666666654321 22223445666666663 3544432111 013556
Q ss_pred CCEEEecCCC
Q 002459 181 LKKLRLSGIR 190 (919)
Q Consensus 181 L~~L~L~~~~ 190 (919)
|+.|++++|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 6666666663
No 95
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0014 Score=73.75 Aligned_cols=335 Identities=13% Similarity=0.127 Sum_probs=190.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-Ch
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (919)
.|.+.++|++.++-++.+|+.|..++-....+- .+..++...++|.+.+.++-..++..+..|+. ++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------------~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------------VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH------------HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 377788888888999999998888866544431 23456677778888888888888888888877 66
Q ss_pred HHHHHHHHhCcHHHHHHHHhc---------------CCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhcc-
Q 002459 460 KVAKAVAEEGGINILAVLARS---------------MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKW- 522 (919)
Q Consensus 460 ~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~- 522 (919)
+.-..+.+ -++.++..|+. .+|-++...++.|.-|..++ +..+.|.+ .|.+...+-
T Consensus 212 ~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntd 284 (866)
T KOG1062|consen 212 DALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTD 284 (866)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccc
Confidence 65555554 45556655542 37778888887777777764 33333322 123333210
Q ss_pred --CCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccc
Q 002459 523 --SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600 (919)
Q Consensus 523 --~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 600 (919)
......+...++.++..+-.+..-+.. ++..|-++|.+.+ ..++.-++..|......++ . .+ ..
T Consensus 285 sskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~----~--av--qr 350 (866)
T KOG1062|consen 285 SSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRD-NNIRYVALNMLLRVVQQDP----T--AV--QR 350 (866)
T ss_pred ccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCc-cceeeeehhhHHhhhcCCc----H--HH--HH
Confidence 001122333444444333322222111 3445555555544 4555556655555554211 0 00 01
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--cchh
Q 002459 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS--EANC 678 (919)
Q Consensus 601 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~--~~~~ 678 (919)
-=..++..|++.|..++..|...+..|.-. .|-..| ++-|+.+|.+ .+++.+...+.-+..++.. ++++
T Consensus 351 Hr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m-----v~eLl~fL~~---~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 351 HRSTILECLKDPDVSIKRRALELSYALVNE-SNVRVM-----VKELLEFLES---SDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHh---ccHHHHHHHHHHHHHHHHhcCCcch
Confidence 113456677777888888887777776633 333333 3557777776 5777777777777777642 4444
Q ss_pred hHH-------------HhcCChHHHHHHHccCC-------------------------HHHHHHHHHHHHHHcC---Cc-
Q 002459 679 IAI-------------GREGGVAPLIALARSEA-------------------------EDVHETAAGALWNLAF---NP- 716 (919)
Q Consensus 679 ~~l-------------~~~g~v~~L~~lL~~~~-------------------------~~v~~~a~~aL~~l~~---~~- 716 (919)
+.| +..+.+..++.++.++. +.+...|.|+++.... +.
T Consensus 422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~ 501 (866)
T KOG1062|consen 422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGA 501 (866)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCc
Confidence 322 23345666777775542 2233344444443321 11
Q ss_pred --ccHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHhhCC
Q 002459 717 --GNALRIVEEGGVPALVHLCSSSG-SKMARFMAALALAYMFDG 757 (919)
Q Consensus 717 --~~~~~l~~~~~i~~Lv~ll~~~~-~~~~~~~A~~~L~~l~~~ 757 (919)
+.-..+-+...+..|.+++.+.. +..++..|..||..+..-
T Consensus 502 ~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 502 NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR 545 (866)
T ss_pred cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 11112224556778888887653 356899999998877643
No 96
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0031 Score=70.58 Aligned_cols=353 Identities=16% Similarity=0.089 Sum_probs=209.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hHHH
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVA 462 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~ 462 (919)
..+.=+++|.+++..|..+|.++.. ..|+..........+..-+..++++++++..++.+.-.+++.. -+..
T Consensus 222 vcEatq~~d~~i~~aa~~ClvkIm~-------LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 222 VCEATQSPDEEIQVAAFQCLVKIMS-------LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred eeecccCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444478899999999999998663 3455556666777778888899999999999999999987751 1211
Q ss_pred ---------------HHHHH---hCcHHHHHHHHhcC------C-HHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHH
Q 002459 463 ---------------KAVAE---EGGINILAVLARSM------N-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (919)
Q Consensus 463 ---------------~~i~~---~g~i~~Lv~lL~~~------~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~ 517 (919)
..+.+ .+.+|.|+++|... | =.....|..+|.-.+. .+....+++.+.
T Consensus 295 ~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~ 367 (859)
T KOG1241|consen 295 IEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLP 367 (859)
T ss_pred HHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHH
Confidence 11111 13467788888541 1 1133333333333332 122335666776
Q ss_pred HHh-ccCCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccch
Q 002459 518 LIF-KWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (919)
Q Consensus 518 lL~-~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 595 (919)
+++ +..+++..-++.|+.+++.+-..++. +..-...++++.++.++.++. --++..++++|..++.+-.....+ .
T Consensus 368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n--~ 444 (859)
T KOG1241|consen 368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN--Q 444 (859)
T ss_pred HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc--H
Confidence 665 33456777888888888888876543 444445688999999998665 677789999999999763211111 1
Q ss_pred hhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC--cc---c-HHHHHHcCCHH----HHHHHHhhcCCCCHHHHHHHH
Q 002459 596 GQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD--DR---N-REAIAAAGGVE----ALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 596 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~---~-~~~l~~~g~i~----~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
......++.+++-|. +.|.+-.+++|++.+|+.. +. + ...... ...+ .|+..-.........+|..|-
T Consensus 445 ~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAY 522 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAY 522 (859)
T ss_pred hhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHH
Confidence 123455566665553 4678889999999999843 11 1 111111 1223 333332221113457889999
Q ss_pred HHHHHcccC-cchhhHHHhc---CChHHHHHHHc-----cCC----HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHH
Q 002459 666 GALWGLSVS-EANCIAIGRE---GGVAPLIALAR-----SEA----EDVHETAAGALWNLAF-NPGNALRIVEEGGVPAL 731 (919)
Q Consensus 666 ~~L~~l~~~-~~~~~~l~~~---g~v~~L~~lL~-----~~~----~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~L 731 (919)
.+|..+... ++....++.. -....|=+.++ ..+ .+++..-+..|..+.. .+..... ........+
T Consensus 523 eALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~lf 601 (859)
T KOG1241|consen 523 EALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGLF 601 (859)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHH
Confidence 999988864 3332222111 01111111222 111 3455556666666544 1222222 223456688
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 732 VHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 732 v~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
++++++..+..+.+.|..+++.+..
T Consensus 602 lri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 602 LRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHcCCccccchHHHHHHHHHHHH
Confidence 8889886677778888777776654
No 97
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=7.2e-05 Score=80.15 Aligned_cols=320 Identities=15% Similarity=0.049 Sum_probs=206.3
Q ss_pred HHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--cc
Q 002459 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EH 502 (919)
Q Consensus 425 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~ 502 (919)
.-++.+++++..+.+.+..++..|++.|.|++.-...............+.++..+.+..++. ++..|-.+-.+- +.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999986222111122222345566666655655553 344455444431 11
Q ss_pred HHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHH---
Q 002459 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL--- 579 (919)
Q Consensus 503 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L--- 579 (919)
...+--.+.+|.|-.-+. ..++..+...+.-|..|-..++....=.-....+-|+.+|.+++ ++++..+-.+|
T Consensus 160 ~~tFsL~~~ipLL~eriy---~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIY---VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEF 235 (675)
T ss_pred ccccCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHH
Confidence 113333344555555554 35777787777777776655543211111245777888998886 78886555544
Q ss_pred -HHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCH
Q 002459 580 -ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASP 658 (919)
Q Consensus 580 -~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~ 658 (919)
..+.+.++. +.-.+.++.++.-+.++++.++..|...+.....-....-...-.|.+..++.++.+ .++
T Consensus 236 L~eI~s~P~s-------~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~---~e~ 305 (675)
T KOG0212|consen 236 LAEIRSSPSS-------MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD---TEE 305 (675)
T ss_pred HHHHhcCccc-------cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC---Ccc
Confidence 444433211 123567888999999999999999988888776654444344445666666666654 332
Q ss_pred -HHHHHHHHH---HHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 002459 659 -GLQERAAGA---LWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (919)
Q Consensus 659 -~~~~~A~~~---L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~l 734 (919)
..++.|..+ |..+...+...+.+--...++.|.+.+.+...+.+..++.-+..+-...+++.........+.|+.-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 344444332 4444444433333222345677888888899999999999999988777777666667788899998
Q ss_pred HhcCCCHHHHHHHHHHHHHhhCCCCc
Q 002459 735 CSSSGSKMARFMAALALAYMFDGRMD 760 (919)
Q Consensus 735 l~~~~~~~~~~~A~~~L~~l~~~~~~ 760 (919)
|.+. ++.+-..+...++.++.+..+
T Consensus 386 Lsd~-sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 386 LSDR-SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hcCc-hhHHHHHHHHHHHHHhcCccc
Confidence 8876 477888899999988877654
No 98
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0015 Score=68.33 Aligned_cols=260 Identities=16% Similarity=0.150 Sum_probs=191.9
Q ss_pred HHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc------c----cHHHHHHhcCHHHHHH
Q 002459 448 AAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE------E----HKGAIADAGGVKALVD 517 (919)
Q Consensus 448 a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------~----~~~~i~~~g~i~~L~~ 517 (919)
.+.-+.-++.-|+.-..+++..+++.|+++|.++|..+....+..|..|+..+ + ....+++.+.++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 44455567788899999999999999999999999999999999999999843 2 2345667788899988
Q ss_pred HHhccCCC---CHHHHHHHHHHHHHhhc-CCcchHHHHhcChHHHHHHHHhcC-CchHHHHHHHHHHHHHhcCCCCCCcc
Q 002459 518 LIFKWSSG---GDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNN 592 (919)
Q Consensus 518 lL~~~~~~---~~~~~~~a~~~L~~L~~-~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~ 592 (919)
-+...... ...-...+...+-|+.. .++....+++.|.+.-|+.-+... .-..-...|...|.-+... ..++
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~---s~e~ 260 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN---SDEN 260 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc---Cchh
Confidence 88652211 12234456777778876 456677888888888777755533 3244556788888877765 3446
Q ss_pred cchhhccchHHHHHHHhCC---------CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 002459 593 SAVGQEAGALEALVQLTRS---------PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (919)
Q Consensus 593 ~~~~~~~~~i~~Lv~lL~~---------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~ 663 (919)
+...-.-+++..+++-+.- +..+..++....|+.+-..+.++..++...|++...-+++ .....+..
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr----~Kk~sr~S 336 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR----EKKVSRGS 336 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH----HHHHhhhh
Confidence 7777788889888876532 1345677788888888889999999999989888777776 35567788
Q ss_pred HHHHHHHcccCc---chhhHHHhcCChHHHHHHHc-c---------CCHHHHHHHHHHHHHHcC
Q 002459 664 AAGALWGLSVSE---ANCIAIGREGGVAPLIALAR-S---------EAEDVHETAAGALWNLAF 714 (919)
Q Consensus 664 A~~~L~~l~~~~---~~~~~l~~~g~v~~L~~lL~-~---------~~~~v~~~a~~aL~~l~~ 714 (919)
|.++|-.....+ +++..+++.+|+..++.+.- . ...+.-+..+..|+.+-.
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 999999888653 68899999999999887763 2 124566667777766644
No 99
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00093 Score=74.56 Aligned_cols=352 Identities=14% Similarity=0.041 Sum_probs=210.6
Q ss_pred HHHHHHhhccCCHH-HHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhh-
Q 002459 381 AGLLLSLMQSTQED-VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLS- 456 (919)
Q Consensus 381 i~~Lv~lL~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~~~~~a~~~L~~l~- 456 (919)
|..|++....+++. +++.+..+|+.+|.+-+ ++..+. ....++-.++.-.+. ++..+|..|..+|.+--
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~------pevl~~-~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDID------PEVLEQ-QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCC------HHHHHH-HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 34556655455544 88999999999996543 332222 233445556665554 57889999999999832
Q ss_pred c------ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHH
Q 002459 457 V------NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (919)
Q Consensus 457 ~------~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 529 (919)
. ++..|.. ..+...+.-.++|.+++..|..+|..|..- .+.-....+......-+.-++ +.++++
T Consensus 204 f~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk---s~~deV 275 (859)
T KOG1241|consen 204 FTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK---SDNDEV 275 (859)
T ss_pred HHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcHHH
Confidence 2 2222222 244555666788999999999999999874 233222223323333444453 577888
Q ss_pred HHHHHHHHHHhhcCCcc----------------hHHHHh---cChHHHHHHHHhcC------CchHHHHHHHHHHHHHhc
Q 002459 530 LERAAGALANLAADDKC----------------SMEVAL---AGGVHALVMLARSC------KFEGVQEQAARALANLAA 584 (919)
Q Consensus 530 ~~~a~~~L~~L~~~~~~----------------~~~l~~---~g~i~~L~~ll~~~------~~~~~~~~a~~~L~~L~~ 584 (919)
.-.+...=.+++..+-. ...+.. .+.+|.|+++|... ++......|..+|.-.+.
T Consensus 276 alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~ 355 (859)
T KOG1241|consen 276 ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ 355 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH
Confidence 77777666656532110 011111 25677888877641 223344456666665554
Q ss_pred CCCCCCcccchhhccchHHHHHH----HhCCCCHHHHHHHHHHHHhhcCCcc-cHHHHHHcCCHHHHHHHHhhcCCCCHH
Q 002459 585 HGDSNSNNSAVGQEAGALEALVQ----LTRSPHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPG 659 (919)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~Lv~----lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~ 659 (919)
. .....++..+. -+++++..-++.|+.++..+-..++ .+..=...++++.++.++.+ ++-.
T Consensus 356 ~-----------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D---~sl~ 421 (859)
T KOG1241|consen 356 C-----------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD---PSLW 421 (859)
T ss_pred H-----------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC---chhh
Confidence 2 12334444444 4567888899999999999876643 34444455689999999987 8888
Q ss_pred HHHHHHHHHHHcccC-cchh-hHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCC-----ccc-HHHHHH---cCCH
Q 002459 660 LQERAAGALWGLSVS-EANC-IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN-----PGN-ALRIVE---EGGV 728 (919)
Q Consensus 660 ~~~~A~~~L~~l~~~-~~~~-~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~-----~~~-~~~l~~---~~~i 728 (919)
++..++|+++.++.. ++.+ ......+.++.++.=|. +.|.+..++++++.+|+.. +.+ +..... ...|
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii 500 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAII 500 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHH
Confidence 999999999999864 3221 12222233344444443 4688999999999999841 111 111111 0112
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhCCCCchh
Q 002459 729 PALVHLCSS--SGSKMARFMAALALAYMFDGRMDEF 762 (919)
Q Consensus 729 ~~Lv~ll~~--~~~~~~~~~A~~~L~~l~~~~~~~~ 762 (919)
..|++.-.. ++....|..|-.||..+...+++.+
T Consensus 501 ~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 501 GSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 233332221 2334588889999988887776654
No 100
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0042 Score=70.08 Aligned_cols=302 Identities=16% Similarity=0.100 Sum_probs=185.5
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHH
Q 002459 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAE 467 (919)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~ 467 (919)
++.+.-++--|..+|++++.. +. -....|.+.++|++.++.++..|+-+...+.. .|+.-+.+
T Consensus 117 ~s~nq~vVglAL~alg~i~s~------------Em--ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-- 180 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSP------------EM--ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-- 180 (866)
T ss_pred cCCCeeehHHHHHHhhccCCH------------HH--hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh--
Confidence 455555666677777776632 11 12356677788888888888888888877665 55544443
Q ss_pred hCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhcc------------CCCCHHHHHHHH
Q 002459 468 EGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKW------------SSGGDGVLERAA 534 (919)
Q Consensus 468 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~------------~~~~~~~~~~a~ 534 (919)
++.-.++|.+.++.|...++..+..++.. ++.-..+.+ .++.|+..|++. .-.+|-++...+
T Consensus 181 ---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 181 ---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred ---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 45556667777777777777777777764 344444433 556666666531 123456677777
Q ss_pred HHHHHhhcCCcch-HHHHhcChHHHHHHHHhcCC-----chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHH
Q 002459 535 GALANLAADDKCS-MEVALAGGVHALVMLARSCK-----FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (919)
Q Consensus 535 ~~L~~L~~~~~~~-~~l~~~g~i~~L~~ll~~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~l 608 (919)
+.|.-|..++..- +.| -..|-+.+.+.+ ...+...++.++..+-. +... ..-++..|-++
T Consensus 256 rlLriLGq~d~daSd~M-----~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~L-----rvlainiLgkF 321 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLM-----NDILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGL-----RVLAINILGKF 321 (866)
T ss_pred HHHHHhcCCCccHHHHH-----HHHHHHHHhcccccccchhHHHHHHHHHHHhccC----CchH-----HHHHHHHHHHH
Confidence 7777777654332 222 122333333221 12344455555554433 1111 12345666667
Q ss_pred hCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 609 TRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 609 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
|.+.+..+|.-|+..|......+++...- -=..+++.|++ ++..++..|...+..+......+ . .++
T Consensus 322 L~n~d~NirYvaLn~L~r~V~~d~~avqr----Hr~tIleCL~D---pD~SIkrralELs~~lvn~~Nv~-~-----mv~ 388 (866)
T KOG1062|consen 322 LLNRDNNIRYVALNMLLRVVQQDPTAVQR----HRSTILECLKD---PDVSIKRRALELSYALVNESNVR-V-----MVK 388 (866)
T ss_pred hcCCccceeeeehhhHHhhhcCCcHHHHH----HHHHHHHHhcC---CcHHHHHHHHHHHHHHhccccHH-H-----HHH
Confidence 77777777777777776655443331111 12467888887 89999999999988877544332 2 356
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcC--CcccHHHH-------------HHcCCHHHHHHHHhcC
Q 002459 689 PLIALARSEAEDVHETAAGALWNLAF--NPGNALRI-------------VEEGGVPALVHLCSSS 738 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l-------------~~~~~i~~Lv~ll~~~ 738 (919)
.|+.+|.+.+++.+...+.-+..++. .|+++..+ +....+..++.++.++
T Consensus 389 eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 389 ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 68899988899999999988888876 56665432 2455688888888776
No 101
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.90 E-value=2.1e-05 Score=54.98 Aligned_cols=41 Identities=39% Similarity=0.418 Sum_probs=38.7
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
+++++..+++.|+++.|+++|+++++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999973
No 102
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.90 E-value=3.3e-06 Score=80.21 Aligned_cols=37 Identities=30% Similarity=0.202 Sum_probs=13.9
Q ss_pred cCCCCCEEEeeccCCCH--HHHHHHHhcCcccceecccc
Q 002459 251 KLPKLVGLDVSRTDVGP--ITISRLLTSSKSLKVLCALN 287 (919)
Q Consensus 251 ~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~ 287 (919)
.+|+|+.|++.+|+++. .--..++..+|+|+.||-..
T Consensus 111 ~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 45555555555544321 12233344566666666543
No 103
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=6.7e-06 Score=81.20 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=122.7
Q ss_pred cEEEecCCccch----HHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCC
Q 002459 106 QKLRFRGAESAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (919)
Q Consensus 106 ~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L 181 (919)
.-|.+.+|.... ..+...|..+++|+|.+..--....+..+..++|.|+.|+|+ |+.+... +..+.-...+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls---~N~L~s~-I~~lp~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS---CNSLSSD-IKSLPLPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc---CCcCCCc-cccCcccccce
Confidence 345556664432 234457888999999887644557788889999999999996 6666542 33332335689
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCC----CCCCHHHHhCC-CCCCEEeecCCCCCCHHHHHHHHhcCCCCC
Q 002459 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC----LNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (919)
Q Consensus 182 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~----~~l~~~~l~~~-~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~ 256 (919)
++|.|+|. +++-.....+.+..|.+++|.+++| .+++|++.... +.+++|...+|...-+.....+.+-+|++.
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 99999988 7888888888888899999999887 23445554433 477778887886655666666677778888
Q ss_pred EEEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
.+-+..|.+.+..-.+-.+..|.+-.|+|+...
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccc
Confidence 887777766555444444445555566665444
No 104
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=2.6e-06 Score=80.94 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH-HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC
Q 002459 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (919)
Q Consensus 178 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~ 256 (919)
+.+++.|+|.++ .++. +..+...+.+|+.|++++| .++. +++..+++|+.|+++++ .|++-+ ..+...+|+|+
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-C-HHHHHH-TT--
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCC-CCCccc-cchHHhCCcCC
Confidence 457899999988 4543 3445545688999999998 4555 67888999999999985 465432 23445789999
Q ss_pred EEEeeccCCCH-HHHHHHHhcCcccceecccccCCccchh
Q 002459 257 GLDVSRTDVGP-ITISRLLTSSKSLKVLCALNCPVLEEEN 295 (919)
Q Consensus 257 ~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 295 (919)
+|++++|.+.+ ..+..+ ..+|+|+.|++.+++ +++..
T Consensus 92 ~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~ 129 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNP-VCEKK 129 (175)
T ss_dssp EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-G-GGGST
T ss_pred EEECcCCcCCChHHhHHH-HcCCCcceeeccCCc-ccchh
Confidence 99999987643 223333 469999999999999 44433
No 105
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.88 E-value=2.9e-06 Score=91.20 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=107.8
Q ss_pred CccEEEecCCccchH--HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCC
Q 002459 104 NLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (919)
Q Consensus 104 ~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L 181 (919)
..+.|+|+++...+. ......+||+++++.+.. + ..+..+.....+|++|+|.. +.|+.-.-..+. ..|.|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-L--t~IP~f~~~sghl~~L~L~~---N~I~sv~se~L~-~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-L--TRIPRFGHESGHLEKLDLRH---NLISSVTSEELS-ALPAL 151 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccch-h--hhcccccccccceeEEeeec---cccccccHHHHH-hHhhh
Confidence 456688877766543 223467888888887654 2 23444445556788888852 333333223332 25678
Q ss_pred CEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHH---HHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEE
Q 002459 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV---ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (919)
Q Consensus 182 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~---~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L 258 (919)
++|+|+.. .++.--...+.. -+++++|+|++| .+++. .|.++.+|..|.|+.+ .++.-. ...+.++|+|+.|
T Consensus 152 rslDLSrN-~is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrN-rittLp-~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRN-RITTLP-QRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhc-hhhcccCCCCCC-CCCceEEeeccc-cccccccccccccchheeeecccC-cccccC-HHHhhhcchhhhh
Confidence 88888865 343322222222 267888888876 56663 3556677888888764 455433 3445678888888
Q ss_pred EeeccCCCHHHHHHHHhcCcccceecccccC--CccchhHHHHHhhhhhhhh
Q 002459 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCP--VLEEENNISAVKSKGKLLL 308 (919)
Q Consensus 259 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~~~~l~l 308 (919)
+|..|.+...... -++++++|+.|.|..+. .++| |.++.......+.+
T Consensus 227 dLnrN~irive~l-tFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 227 DLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNL 276 (873)
T ss_pred hccccceeeehhh-hhcCchhhhhhhhhhcCcccccC-cceeeecccceeec
Confidence 8888765322111 12356777777765553 2333 23444444444444
No 106
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00015 Score=77.21 Aligned_cols=296 Identities=13% Similarity=0.092 Sum_probs=192.1
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCC
Q 002459 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSS 524 (919)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~ 524 (919)
.++..|..++. -.-.|..+.+....++|+++|++++..+..-+...++|.... +..+..+.+.|.+..|+.++. +
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~---s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM---S 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh---c
Confidence 44555666666 345777778888899999999988888888888888888875 577888999999999999996 4
Q ss_pred CCHHHHHHHHHHHHHhhcCCc--chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccc--
Q 002459 525 GGDGVLERAAGALANLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG-- 600 (919)
Q Consensus 525 ~~~~~~~~a~~~L~~L~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~-- 600 (919)
.++.++.+..|+++++-.+.+ .+-.+...-++..++.+..++. ..+|..+...|+|++.....+++.+..+.+..
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 688999999999999987543 3445666667889999998876 89999999999999875433333444443322
Q ss_pred --hHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccH-HHHHHcC-CHHHHHHHHhh------cCCCC--HHHHHHHHHHH
Q 002459 601 --ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNR-EAIAAAG-GVEALVVLAQS------CSNAS--PGLQERAAGAL 668 (919)
Q Consensus 601 --~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~l~~~g-~i~~Lv~ll~~------~~~~~--~~~~~~A~~~L 668 (919)
..+.|+..++..+|-..+..+..|.+++..+++. ..+.++. .+..+...|.. ..+++ ..+-..-..+.
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 3455666677777665566688888877776664 4444432 22222233221 00000 00000001111
Q ss_pred HHcccCcchhhHHHhcCChHHHHH------HHc----cCCHHHHHHHHHHHHHHcCCcc---------cHHHHHHcCCHH
Q 002459 669 WGLSVSEANCIAIGREGGVAPLIA------LAR----SEAEDVHETAAGALWNLAFNPG---------NALRIVEEGGVP 729 (919)
Q Consensus 669 ~~l~~~~~~~~~l~~~g~v~~L~~------lL~----~~~~~v~~~a~~aL~~l~~~~~---------~~~~l~~~~~i~ 729 (919)
.++..+ .|+...++. ... +.+.+...+..+...|+..... .|..+..+.|+.
T Consensus 644 v~l~e~---------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~ 714 (743)
T COG5369 644 VNLSEN---------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR 714 (743)
T ss_pred eccccc---------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence 111111 122222221 111 1245677777787777765322 234556677888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 730 ALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 730 ~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.++..+...+++.+|+.+-.||.++-
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 88888888888999999999998764
No 107
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.84 E-value=5.5e-07 Score=97.03 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=109.7
Q ss_pred hCCCccEEEecCCccchHHHHH--cCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcC
Q 002459 101 RCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (919)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~ 178 (919)
+..+|++|+|+++.....-+.. ...+|..|.+++.. -|-..+..-...+.||..++|+ |++++. +..-....
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS---~N~Lp~--vPecly~l 244 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS---ENNLPI--VPECLYKL 244 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc---ccCCCc--chHHHhhh
Confidence 3445666777766544322211 33455555665543 2333333344556788888885 555543 22222346
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH--HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC
Q 002459 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (919)
Q Consensus 179 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~ 256 (919)
++|+.|+|+++ .++.-.+ -.....+|++|+++.| .++. .++..+++|+.|.+.++ .++-+|+.+=...+.+|+
T Consensus 245 ~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhH
Confidence 88999999987 4544222 1222378999999987 4443 56778888888888654 566666555445566677
Q ss_pred EEEeecc--CCCHHHHHHHHhcCcccceecccccCCccchhHHHHH
Q 002459 257 GLDVSRT--DVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 257 ~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~ 300 (919)
.+...+| .+-++++.. |++|+.|.|+.+..||-..-.++.
T Consensus 320 vf~aanN~LElVPEglcR----C~kL~kL~L~~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCR----CVKLQKLKLDHNRLITLPEAIHLL 361 (1255)
T ss_pred HHHhhccccccCchhhhh----hHHHHHhcccccceeechhhhhhc
Confidence 7666665 345565553 777777777766666654434443
No 108
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.017 Score=64.44 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=148.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (919)
+-++.+|++.-+-++..|...+..+...-. +++. -.+|.|++-|.++|+.++..|+.++..|+. +|+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYP----------eAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYP----------EALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhh----------HhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 678899999999999999999998764322 2222 468899999999999999999999999998 886
Q ss_pred HHHHHHHhCcHHHHHHHHh-cCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~ 538 (919)
+.-.+ -|.+.++|- +.|.-+....+...++|+--+ ....+ .+++|..++.+ .....+...+..++.
T Consensus 215 nyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~s--T~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 215 NYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMES--TVAMSLLYECVNTVV 282 (877)
T ss_pred ccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHh--hHHHHHHHHHHHHhe
Confidence 64333 356667774 467778888888888888754 22222 57888888863 233445555544443
Q ss_pred H--hhcCC-cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHH
Q 002459 539 N--LAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (919)
Q Consensus 539 ~--L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 615 (919)
. ++..- ++-..+ .-+++.|-.++.+.+ +.++.-++-++..+.... + ..+ ..--+.++++|.+.|+.
T Consensus 283 a~s~s~g~~d~~asi--qLCvqKLr~fiedsD-qNLKYlgLlam~KI~ktH---p---~~V--qa~kdlIlrcL~DkD~S 351 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASI--QLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTH---P---KAV--QAHKDLILRCLDDKDES 351 (877)
T ss_pred eehhccCCCCcHHHH--HHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhC---H---HHH--HHhHHHHHHHhccCCch
Confidence 3 22221 111111 125677777777775 899999999999888642 1 111 12235577889999999
Q ss_pred HHHHHHHHHHhhcCC
Q 002459 616 VRQEAAGALWNLSFD 630 (919)
Q Consensus 616 ~~~~a~~~L~~Ls~~ 630 (919)
+|..|+..|..+...
T Consensus 352 IRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 352 IRLRALDLLYGMVSK 366 (877)
T ss_pred hHHHHHHHHHHHhhh
Confidence 999999999988754
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.014 Score=65.69 Aligned_cols=252 Identities=17% Similarity=0.052 Sum_probs=138.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHH-HhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGL-ATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
.-|..||.+..+..+..|.+-| +.++.+.+- ...+|.+|+...+.+.++++..--.|...+....
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv--------------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp 103 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV--------------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP 103 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC
Confidence 3588889777777777776644 444443331 2457788888889999998887777776665221
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhc-cCCCCHHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALAN 539 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~~~a~~~L~~ 539 (919)
.-. .=.|..+-+-|+++|+.+|..|+++|..+-..- ..|.++-.+++ ..+..+-++..|+.++-.
T Consensus 104 dLA----LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~----------IaPI~llAIk~~~~D~s~yVRk~AA~AIpK 169 (968)
T KOG1060|consen 104 DLA----LLSINTFQKALKDPNQLIRASALRVLSSIRVPM----------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPK 169 (968)
T ss_pred Cce----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHH
Confidence 111 113777788888999999988888877665421 11222222221 134566777777777776
Q ss_pred hhcC-CcchHHHHhc----------ChH----------------------HHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 540 LAAD-DKCSMEVALA----------GGV----------------------HALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 540 L~~~-~~~~~~l~~~----------g~i----------------------~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
|-.- ++.+.++.+. +.+ ..+.+++.+-+ +--|.-....|..-+.+.
T Consensus 170 LYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvd-eWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 170 LYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVD-EWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchh-hhhHHHHHHHHHHHHHhc
Confidence 6542 2332222110 111 11111221111 111222333333223221
Q ss_pred CCCC---------------------cccch-hhccc---hHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 002459 587 DSNS---------------------NNSAV-GQEAG---ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG 641 (919)
Q Consensus 587 ~~~~---------------------~~~~~-~~~~~---~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g 641 (919)
-..+ +.+.- ..+.+ .++..-.+|.+.++.+..+++.+++.++-..+.. .
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~------~ 322 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVT------K 322 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHH------H
Confidence 1111 00000 11111 1222234677789999999999999998654222 3
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 642 GVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 642 ~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
.+++|+++|.+ +.++|...+..+..++
T Consensus 323 i~kaLvrLLrs----~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 323 IAKALVRLLRS----NREVQYVVLQNIATIS 349 (968)
T ss_pred HHHHHHHHHhc----CCcchhhhHHHHHHHH
Confidence 47899999984 5567776666666665
No 110
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.0035 Score=69.09 Aligned_cols=336 Identities=18% Similarity=0.086 Sum_probs=199.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHH-HHHHHHHhhcChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSE-AAKAIANLSVNAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~-a~~~L~~l~~~~~ 460 (919)
+.+.++++......+..++..+..+..+.. ...+.+.+.+..+-+...+......+. ++-+......+-.
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~---------i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg 207 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLG---------IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG 207 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcH---------HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC
Confidence 677888887778888889999998875533 345677788888888888754444433 2211111111000
Q ss_pred HHHHHHHhCcH---HHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcC----HHHHHHHHhccCCCCHHHHHHH
Q 002459 461 VAKAVAEEGGI---NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGG----VKALVDLIFKWSSGGDGVLERA 533 (919)
Q Consensus 461 ~~~~i~~~g~i---~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~----i~~L~~lL~~~~~~~~~~~~~a 533 (919)
...+-..+ |.++.-..+..+.+|+.|..+...+...- ...+ ++.++.-+.. ..-..+..+
T Consensus 208 ---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~-------~~~aVK~llpsll~~l~~---~kWrtK~as 274 (569)
T KOG1242|consen 208 ---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL-------SAYAVKLLLPSLLGSLLE---AKWRTKMAS 274 (569)
T ss_pred ---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc-------CcchhhHhhhhhHHHHHH---HhhhhHHHH
Confidence 01112223 33444445567788887777666555421 1122 3333333321 233556678
Q ss_pred HHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCC
Q 002459 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (919)
Q Consensus 534 ~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 613 (919)
+..+..++.....+-.......+|.+.+.+-+.. ++++..+..+|..++..-+ +..+ ...++.|++.+.++.
T Consensus 275 lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svid----N~dI---~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVID----NPDI---QKIIPTLLDALADPS 346 (569)
T ss_pred HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhc----cHHH---HHHHHHHHHHhcCcc
Confidence 8888888877777667777789999999999886 9999999999999987533 2221 345677777776655
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcccCcchhhHHHhc--CChHHH
Q 002459 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCS-NASPGLQERAAGALWGLSVSEANCIAIGRE--GGVAPL 690 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~--g~v~~L 690 (919)
..+.+ +...|..-+.-. .++.-.+..++.++.... ..+...+..++.+++|++.-.+..+.+... ..++.|
T Consensus 347 ~~~~e-~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 347 CYTPE-CLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred cchHH-HHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHH
Confidence 34333 333333322110 011123344444443211 156778889999999999754333333221 133334
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 691 IALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 691 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
-..+.+..|++|..++.+|.-+-..-.++.. .+.+|.+.+.+.+.....-+.-++..+..+..
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 4444556799999999999877653333322 56778888887766555556666666654443
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.81 E-value=7.5e-05 Score=63.03 Aligned_cols=88 Identities=32% Similarity=0.414 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHH
Q 002459 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRI 722 (919)
Q Consensus 643 i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l 722 (919)
|+.|++.+.. ++++.+|..|+.+|+++. ....++.|++++.++++.|+..|+.+|..+.
T Consensus 1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQN--DPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHT--SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 5788998843 389999999999999543 2246899999999999999999999999874
Q ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002459 723 VEEGGVPALVHLCSSSGSKMARFMAALALA 752 (919)
Q Consensus 723 ~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~ 752 (919)
...+++.|.+++.++++..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45689999999998877888999999885
No 112
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.80 E-value=7.5e-05 Score=63.01 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=71.1
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh
Q 002459 381 AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (919)
Q Consensus 381 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 459 (919)
|+.|++.| +++++.++..++.+|+.+- +..+++.|+++++++++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------------DPEAIPALIELLKDEDPMVRRAAARALGRIG--- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 57899999 8899999999999999632 2255889999999999999999999999885
Q ss_pred HHHHHHHHhCcHHHHHHHHhcC-CHHHHHHHHHHHH
Q 002459 460 KVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLW 494 (919)
Q Consensus 460 ~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 494 (919)
....++.|.+++.++ +..++..|+.+|+
T Consensus 60 -------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 233789999999774 5667898988874
No 113
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.79 E-value=8.2e-06 Score=92.80 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCC--CCCCHHHHhCCCCCCEEeecCCCC--CCHH-----HHHHH---
Q 002459 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSN--MKWG-----VVSQV--- 248 (919)
Q Consensus 181 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~l~~~~l~~~~~L~~L~l~~c~~--i~~~-----~l~~l--- 248 (919)
|..|.+.+. .++|.++..+.- .++|+.|+|++| ..+.+..+.++..|+.|+|||+.- +.+. .+..+
T Consensus 361 Lq~LylanN-~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 361 LQELYLANN-HLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHhcC-cccccchhhhcc-ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 344445555 567777765543 477888888877 345566777777788888877521 1111 01111
Q ss_pred ---------HhcCCCCCEEEeeccCCCHHHHHHHHhcCcccceecccccCC
Q 002459 249 ---------WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (919)
Q Consensus 249 ---------~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 290 (919)
...+|.|+.+|++.|+++...+.+... .|+||+||++|+.+
T Consensus 439 sN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred CCceeechhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 135689999999999888777766544 38999999999985
No 114
>PF05536 Neurochondrin: Neurochondrin
Probab=97.74 E-value=0.0026 Score=72.53 Aligned_cols=238 Identities=18% Similarity=0.073 Sum_probs=161.9
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhc-Ch---HHHHHHHHhCcHHHHHHHHhc-------CCHHHHHHHHHHHHhhc
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV-NA---KVAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLS 497 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~---~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls 497 (919)
.++..+++|++.+++-|-.++-.+-++.. ++ ..++.+.+.=|.+.+-++|++ +....+..|+.+|...+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35678899999887778888888888877 33 345568888889999999987 34667889999999999
Q ss_pred cCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHH
Q 002459 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAAR 577 (919)
Q Consensus 498 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (919)
.+|+....-.-.+-||.|++++.+ ..+..+...+..+|..++..++++..+.+.|+++.|++.+.+. +...+.+..
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHHHH
Confidence 987654333333469999999975 2334889999999999999999999999999999999999874 456788999
Q ss_pred HHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc--HHHHHHc----CCHHHHHHHHh
Q 002459 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN--REAIAAA----GGVEALVVLAQ 651 (919)
Q Consensus 578 ~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~l~~~----g~i~~Lv~ll~ 651 (919)
++.++....+...-....-.-...++.+-..+.......+-..+..|..+-...+. ....... .....+..+++
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 99888764221000000000013344444555555555566677777776444321 1111111 23445566666
Q ss_pred hcCCCCHHHHHHHHHHHHHcc
Q 002459 652 SCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 652 ~~~~~~~~~~~~A~~~L~~l~ 672 (919)
+ ...+..|..|......+.
T Consensus 242 s--r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 242 S--RLTPSQRDPALNLAASLL 260 (543)
T ss_pred c--CCCHHHHHHHHHHHHHHH
Confidence 5 456677777666666655
No 115
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=0.0014 Score=64.48 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=121.3
Q ss_pred HHHHHHHhCCCccEEEecCCccchHHHHH------cCCCccEEEecCCCC--CCHH------HHHHHHhcCCCCCEEeeC
Q 002459 94 MAASLASRCMNLQKLRFRGAESADSIIHL------QARNLRELSGDYCRK--ITDA------TLSVIVARHEALESLQLG 159 (919)
Q Consensus 94 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~~--~~~~------~l~~l~~~~~~L~~L~L~ 159 (919)
++..+.. ...+..++|+|+.+....... .-++|+..+++.-.. ..|+ .+......||+|+..+|+
T Consensus 22 v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 3444444 467888899988776543322 235666666655321 1221 122334578999999996
Q ss_pred CCCCCCCCH---HHHHHHHhcCCCCCEEEecCCCCCCHH-------HHHHHH-----hhCCCCcEEEecCCCCCCH----
Q 002459 160 PDFCERITS---DAVKAIALCCPKLKKLRLSGIRDICGD-------AINALA-----KLCPNLTDIGFLDCLNVDE---- 220 (919)
Q Consensus 160 ~~~~~~i~~---~~l~~l~~~~~~L~~L~L~~~~~~~~~-------~l~~l~-----~~~~~L~~L~l~~~~~l~~---- 220 (919)
-+.++. ..+..+..+-..|++|.|++| ++... ++..++ ..-|.|+......|..-..
T Consensus 101 ---DNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 101 ---DNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ---ccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 223332 233334445677999999988 55432 233333 2237888888877632221
Q ss_pred --HHHhCCCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCEEEeeccCCCHHH---HHHHHhcCcccceecccccCCc
Q 002459 221 --VALGNVLSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPIT---ISRLLTSSKSLKVLCALNCPVL 291 (919)
Q Consensus 221 --~~l~~~~~L~~L~l~~c~~i~~~~l~~l~----~~~~~L~~L~l~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~l 291 (919)
..+..-.+|+.+.+..+ .|...|+..+. .+|.+|+.|||..|-++-.+ +...+...+.|+.|++..|- +
T Consensus 177 ~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-l 254 (388)
T COG5238 177 SAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-L 254 (388)
T ss_pred HHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-h
Confidence 12333368888888764 57777665554 46789999999987665544 34444456888999999997 7
Q ss_pred cchhHHHHH
Q 002459 292 EEENNISAV 300 (919)
Q Consensus 292 ~~~~~~~~~ 300 (919)
+..++..+.
T Consensus 255 s~~G~~~v~ 263 (388)
T COG5238 255 SNEGVKSVL 263 (388)
T ss_pred ccccHHHHH
Confidence 777755554
No 116
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.67 E-value=8.7e-05 Score=51.84 Aligned_cols=39 Identities=38% Similarity=0.447 Sum_probs=36.7
Q ss_pred hhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 418 CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 418 ~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
++++..+++.|++|.|+++|++++++++..|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999997
No 117
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=0.00023 Score=69.69 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCEEEecCCCCCCHHHHHHHH----hhCCCCcEEEecCC
Q 002459 180 KLKKLRLSGIRDICGDAINALA----KLCPNLTDIGFLDC 215 (919)
Q Consensus 180 ~L~~L~L~~~~~~~~~~l~~l~----~~~~~L~~L~l~~~ 215 (919)
+|+.+.+..+ ++..+++..+. ..|.+|+.|+|.+|
T Consensus 186 ~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 186 NLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred CceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 4444444444 34444333322 23444555555544
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.076 Score=57.80 Aligned_cols=413 Identities=17% Similarity=0.128 Sum_probs=210.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChHH
Q 002459 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKAIANLSVNAKV 461 (919)
Q Consensus 383 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~ 461 (919)
.+.++.++.++..+...--++..|+.-.++-+ + +...+++-+..+.+ .++-.|++.|......+
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl---------m----~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~-- 133 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTEDVL---------M----GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE-- 133 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcchhhh---------H----HHHHHHHhhccCCccccccHHHHHHHHhcCcc--
Confidence 45666688998888877777777765433211 1 13356666666644 67777888777765422
Q ss_pred HHHHHHhCcHHHHHHHHh----cCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhc---------cCCCCHH
Q 002459 462 AKAVAEEGGINILAVLAR----SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---------WSSGGDG 528 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~~~~ 528 (919)
.++..-++|. +..+.++..|+..-++|--...++..--....-++.+.+-+. .+.+++-
T Consensus 134 --------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~i 205 (898)
T COG5240 134 --------TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPI 205 (898)
T ss_pred --------hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChH
Confidence 2233333332 346666767776666666543322211111112222222211 1334556
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHH---HHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQ---EQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 529 ~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~---~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
.+.+|++.|+.+-..+.. +.-.+++.++......-+ ....++...+... +++.. ....|.|
T Consensus 206 sqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~---n~q~~-----~q~rpfL 269 (898)
T COG5240 206 SQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE---NSQAL-----LQLRPFL 269 (898)
T ss_pred HHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHh---ChHHH-----HHHHHHH
Confidence 778888888877654432 233445555433211111 1122233333221 11111 1122333
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-----------
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS----------- 674 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~----------- 674 (919)
-..+.+.-+.+...+++++..++...- ...++++ .+..|-.+|.+ .....|-.|.++|..++..
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~~-~vs~L~~fL~s---~rv~~rFsA~Riln~lam~~P~kv~vcN~e 344 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEENV-GSQFVDQ-TVSSLRTFLKS---TRVVLRFSAMRILNQLAMKYPQKVSVCNKE 344 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHHH-HHHHHHHHHhc---chHHHHHHHHHHHHHHHhhCCceeeecChh
Confidence 344555556677777777777665421 1112221 35556666665 6667777788888777631
Q ss_pred ------cchh-------hHHHhcC---ChHHHHHHH----ccCCHHHHHHHHHHHHHHcC-CcccHH--------HHHHc
Q 002459 675 ------EANC-------IAIGREG---GVAPLIALA----RSEAEDVHETAAGALWNLAF-NPGNAL--------RIVEE 725 (919)
Q Consensus 675 ------~~~~-------~~l~~~g---~v~~L~~lL----~~~~~~v~~~a~~aL~~l~~-~~~~~~--------~l~~~ 725 (919)
+.|| ..+.+.| -+..|++++ ++-+..-+.-++.++..|+. .|..+. .+.++
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e 424 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE 424 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 1111 1122222 233333333 33334444445556666654 333322 23356
Q ss_pred CC-------HHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC-chh--Hhhccc------cccccceechhHHHHhhHHHH
Q 002459 726 GG-------VPALVHLCSSSGSKMARFMAALALAYMFDGRM-DEF--ALIGTS------TESTSKCVSLDGARRMALKHI 789 (919)
Q Consensus 726 ~~-------i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~-~~~--~~~~~~------~~~~~~~v~~~~~~~~~~~~i 789 (919)
|+ +..+.++++. .|+.++.|..-|+....++. ..+ ++++-+ .+.+...|+- |
T Consensus 425 Gg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh----------I 492 (898)
T COG5240 425 GGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH----------I 492 (898)
T ss_pred ccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH----------H
Confidence 66 6677777764 36789999999987776652 222 222211 1112211111 1
Q ss_pred HHHHHhcCChhHHHHHHhcccchhhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHHHhhc
Q 002459 790 EAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFALLQFT 862 (919)
Q Consensus 790 ~~lv~~~~~~~~~~~a~~ala~~~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al~~~~ 862 (919)
-. .-.+.+.-++.+|..|+..|+++-- ......- +...|.+.+.+.+..+|..|+|+|..+.
T Consensus 493 yN-R~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~s-------v~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 493 YN-RLILENNIVRSAAVQALSKFALNIS---DVVSPQS-------VENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HH-HHHHhhhHHHHHHHHHHHHhccCcc---ccccHHH-------HHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 00 0023456666676666666665321 1111112 5667889999999999999999995554
No 119
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.65 E-value=0.0019 Score=71.55 Aligned_cols=342 Identities=15% Similarity=0.107 Sum_probs=192.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCH--HHHHHHHHHHHH-hhc
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE--GLQSEAAKAIAN-LSV 457 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~--~~~~~a~~~L~~-l~~ 457 (919)
|..++.-++++.++.+...+.++.++...-.. ..++ .-.++..+..++-.++..+. .+......++.+ +..
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~-~did-----erleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~ 791 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGA-ADID-----ERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG 791 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhcccc-cccc-----HHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 45566666777777776666666654422111 1111 11222344455555554322 222222222222 111
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccH---HHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK---GAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~---~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
..+..+ ...+..++..|++..+.++..|+..+..++.-=..+ ..+...|.| |.+.| ....+++.-..+
T Consensus 792 --r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEyl---geeypEvLgsIL 862 (1172)
T KOG0213|consen 792 --RVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYL---GEEYPEVLGSIL 862 (1172)
T ss_pred --ccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhc---CcccHHHHHHHH
Confidence 000000 112445667788899999999999998888642222 223333322 55666 457788888888
Q ss_pred HHHHHhhcCCcc-hHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCC
Q 002459 535 GALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (919)
Q Consensus 535 ~~L~~L~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 613 (919)
+++..+...-.. +..-=-.+.+|.|..+|++.. ..+++++...+..++..+......++- -.+--.|+.+|++.+
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREW---MRIcfeLlelLkahk 938 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREW---MRICFELLELLKAHK 938 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHH---HHHHHHHHHHHHHHH
Confidence 888777642211 111011367899999999886 899999999999999865332222222 123335777888889
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHH
Q 002459 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL 693 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~l 693 (919)
.++|.+|...+..++.-- |--+.|..+|... ...+-|...+.+++ ++...+.+ .-...+|.|++-
T Consensus 939 K~iRRaa~nTfG~IakaI---------GPqdVLatLlnnL--kvqeRq~RvcTtva-IaIVaE~c---~pFtVLPalmne 1003 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKAI---------GPQDVLATLLNNL--KVQERQNRVCTTVA-IAIVAETC---GPFTVLPALMNE 1003 (1172)
T ss_pred HHHHHHHHhhhhHHHHhc---------CHHHHHHHHHhcc--hHHHHHhchhhhhh-hhhhhhhc---CchhhhHHHHhh
Confidence 999999999999887541 1112333333321 11222222222221 11100000 011256666666
Q ss_pred HccCCHHHHHHHHHHHHHHcCCcc--cHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 694 ARSEAEDVHETAAGALWNLAFNPG--NALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 694 L~~~~~~v~~~a~~aL~~l~~~~~--~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
.+.++..|+...+.+|+.|-..-. .+..+ ....|.|.+.|.+.+ +.-|.-|+.++.+|+.+..
T Consensus 1004 YrtPe~nVQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1004 YRTPEANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRD-LVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred ccCchhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhcccc-HHHHHHHHHHHHHHhcCCC
Confidence 677778899999999998875322 22222 234677777777654 7779999999999987753
No 120
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=5.3e-05 Score=71.16 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH---hCCCCCCEEeecCCC
Q 002459 165 RITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSVRFLSVAGTS 238 (919)
Q Consensus 165 ~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l---~~~~~L~~L~l~~c~ 238 (919)
.|...++..+- .++.|++|.+.+|..+.|.++..+....|+|+.|+|++|+.||+.++ ..+++|+.|.|.+-.
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 45555555553 35666666666666666666666665556666666666666666543 344555555555433
No 121
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.59 E-value=0.06 Score=62.12 Aligned_cols=288 Identities=20% Similarity=0.139 Sum_probs=168.3
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH--HHHHHH
Q 002459 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK--VAKAVA 466 (919)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~ 466 (919)
++.|.++++.|..+++.+...-.+.+. .--...++.+++.| +++-.|..|++++..++..+- ....+.
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~--------~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l 649 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLG--------NELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVL 649 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhH
Confidence 567788999999999987644332211 11123344455544 456678889999998876442 111111
Q ss_pred HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002459 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544 (919)
Q Consensus 467 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~ 544 (919)
..+++.+..+++......+.....++-.|..+. .......+. .+..+..++. ..+..+.+.|...|..+....
T Consensus 650 -~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lis---esdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 650 -TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLIS---ESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhh---HHHHHHHHHHHHHHHHHHhcc
Confidence 235888889988877778877777777776642 122222222 3334445553 255567788888998888877
Q ss_pred cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHH----HHHhcCCCCCCcccchhhccchHHHHHHHhCCCCH-----H
Q 002459 545 KCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL----ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE-----G 615 (919)
Q Consensus 545 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L----~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-----~ 615 (919)
.....-.....++.++.+++++- ++-.+..++ ..+.....+ +-+ ...++.++..+-+ .
T Consensus 725 ps~l~~~~~~iL~~ii~ll~Spl---lqg~al~~~l~~f~alV~t~~~---------~l~-y~~l~s~lt~PV~~~~~~~ 791 (1233)
T KOG1824|consen 725 PSSLLKISNPILDEIIRLLRSPL---LQGGALSALLLFFQALVITKEP---------DLD-YISLLSLLTAPVYEQVTDG 791 (1233)
T ss_pred cHHHHHHhhhhHHHHHHHhhCcc---ccchHHHHHHHHHHHHHhcCCC---------Ccc-HHHHHHHHcCCcccccccc
Confidence 66665556678899999999764 333333332 223322111 112 5566666655311 2
Q ss_pred HHHHHHHHHHh----hcCC--cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHH
Q 002459 616 VRQEAAGALWN----LSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAP 689 (919)
Q Consensus 616 ~~~~a~~~L~~----Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~ 689 (919)
+..+|...+.. |+.. ..++. ....|+.-+++ +..+..++..|.-.|+.+...... ....+.-..
T Consensus 792 l~kqa~~siA~cvA~Lt~~~~~~s~s------~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~ 861 (1233)
T KOG1824|consen 792 LHKQAYYSIAKCVAALTCACPQKSKS------LATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDL---SPQNELKDT 861 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchh------HHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCC---CcchhhHHH
Confidence 33333332222 2111 11121 12344444444 346777888888888888754211 111233346
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 690 LIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 690 L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
++..+++++++|+.+|..||++++.
T Consensus 862 iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 862 IIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred HHHHcCCChHHHHHHHHHHhhhhhc
Confidence 7788899999999999999999986
No 122
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.58 E-value=0.0075 Score=67.40 Aligned_cols=256 Identities=18% Similarity=0.202 Sum_probs=170.6
Q ss_pred hcCCCChhHHHHhhcHHHHHHhh----------ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHH
Q 002459 366 ESNPQGLDDFWLKQGAGLLLSLM----------QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD 435 (919)
Q Consensus 366 ~~~~~~~~~~~~~~gi~~Lv~lL----------~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~ 435 (919)
..++...+.+...+|+..|++.- ...++++...|.+||+|+.+.+.. .+..+.+.|+.+.+++
T Consensus 9 sRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~-------aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 9 SRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPS-------ARQIFVDLGLAEKLCE 81 (446)
T ss_pred ccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHH-------HHHHHHHcCcHHHHHH
Confidence 44566777778888887777765 346688999999999998876553 4577889999999999
Q ss_pred HHccC-----CHHHHHHHHHHHHHhhc-ChHHHHHHHHh-CcHHHHHHHHhc-----------------CCHHHHHHHHH
Q 002459 436 LAKSW-----REGLQSEAAKAIANLSV-NAKVAKAVAEE-GGINILAVLARS-----------------MNRLVAEEAAG 491 (919)
Q Consensus 436 lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-g~i~~Lv~lL~~-----------------~~~~~~~~a~~ 491 (919)
.|+.. +.++.....+.|.-++. ..+.+..+++. +|+..++..|.. .+......+++
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 99986 78899999999998877 77788777766 778777776632 13445678889
Q ss_pred HHHhhccCcccHHHHHHhcCHHHHHHHHhcc------CCCCHHHHHHHHHHHHHhhcCC-cc-------hHH----HHhc
Q 002459 492 GLWNLSVGEEHKGAIADAGGVKALVDLIFKW------SSGGDGVLERAAGALANLAADD-KC-------SME----VALA 553 (919)
Q Consensus 492 ~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~------~~~~~~~~~~a~~~L~~L~~~~-~~-------~~~----l~~~ 553 (919)
++.|+.........-.....++.++.++... .........+++.+|.|+--.. +. ... -...
T Consensus 162 llFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 162 LLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 9999988643322222334566666665542 2334567778888888873110 00 000 1112
Q ss_pred ChHHHHHHHHhc----CC---chHHHHHHHHHHHHHhcCCCCCCcccchh----------------hccchHHHHHHHhC
Q 002459 554 GGVHALVMLARS----CK---FEGVQEQAARALANLAAHGDSNSNNSAVG----------------QEAGALEALVQLTR 610 (919)
Q Consensus 554 g~i~~L~~ll~~----~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~----------------~~~~~i~~Lv~lL~ 610 (919)
..+..|+.+|.. .. ..+.....+.+|.+++... ...|+.+ .....-..|++++.
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 346666666642 11 1234455666677776642 2222222 23455667889998
Q ss_pred CCCHHHHHHHHHHHHhhcCCc
Q 002459 611 SPHEGVRQEAAGALWNLSFDD 631 (919)
Q Consensus 611 ~~~~~~~~~a~~~L~~Ls~~~ 631 (919)
+..+.++..++..|+.||..+
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 888999999999999998543
No 123
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0017 Score=69.43 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=119.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-- 458 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-- 458 (919)
+++|++.|+.++-.+..-+...++++...-.. -...+.+.|.+..|++++.+.|...|....|+|+.+..+
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-------L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSN-------LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccc-------hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 57899999887766677778888887765332 345688999999999999999999999999999998773
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc----ccHHHHHHhcC----HHHHHHHHhccCCCCHHHH
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE----EHKGAIADAGG----VKALVDLIFKWSSGGDGVL 530 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~----~~~~~i~~~g~----i~~L~~lL~~~~~~~~~~~ 530 (919)
.+.+-.+...-|+..++.+.++++-.+++.+..+|.|+..+. +.++.+.+..- .+.|++.++ ..++-..
T Consensus 506 ~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e---~~np~~i 582 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE---ENNPMEI 582 (743)
T ss_pred chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH---hcCchhh
Confidence 445566677778999999999999999999999999999843 23333333322 233444444 3555555
Q ss_pred HHHHHHHHHhhcCCcchHHHHh
Q 002459 531 ERAAGALANLAADDKCSMEVAL 552 (919)
Q Consensus 531 ~~a~~~L~~L~~~~~~~~~l~~ 552 (919)
...+..|.+++..+++.+.++.
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHH
Confidence 5567888888887776655443
No 124
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.57 E-value=0.015 Score=66.66 Aligned_cols=345 Identities=15% Similarity=0.097 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hHHHHHHHHh
Q 002459 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEE 468 (919)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~ 468 (919)
+++-.+..|++++..++.+.-.. . . .-.-..+++.+...++......+...+.++..+..+ +.......+.
T Consensus 621 ~nEiTRl~AvkAlt~Ia~S~l~i-~-----l-~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~ 693 (1233)
T KOG1824|consen 621 GNEITRLTAVKALTLIAMSPLDI-D-----L-SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA 693 (1233)
T ss_pred hchhHHHHHHHHHHHHHhcccee-e-----h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45667888999999887553321 1 0 112345677888888877777777777777766541 1111122211
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHh--------
Q 002459 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL-------- 540 (919)
Q Consensus 469 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L-------- 540 (919)
.+.-+..++...+..+.+.|...|.-+...+.....-...-.++.++.+++++ -++-.|..++.++
T Consensus 694 -vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp-----llqg~al~~~l~~f~alV~t~ 767 (1233)
T KOG1824|consen 694 -VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP-----LLQGGALSALLLFFQALVITK 767 (1233)
T ss_pred -HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc-----cccchHHHHHHHHHHHHHhcC
Confidence 23444555666778888888888888888766555544555566666666431 1111111111100
Q ss_pred ------------hcCC--c--c----hH----------HHHh------cChHHHHHHHHh-cCCchHHHHHHHHHHHHHh
Q 002459 541 ------------AADD--K--C----SM----------EVAL------AGGVHALVMLAR-SCKFEGVQEQAARALANLA 583 (919)
Q Consensus 541 ------------~~~~--~--~----~~----------~l~~------~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~L~ 583 (919)
...+ + . ++ ++.. ......|+.-+. ...+..++.-|.-.|+.+.
T Consensus 768 ~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElg 847 (1233)
T KOG1824|consen 768 EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELG 847 (1233)
T ss_pred CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhc
Confidence 0000 0 0 00 0000 011223333222 2333556666777777776
Q ss_pred cCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCc--ccHHHHHHc---------CCHHHHHHHHhh
Q 002459 584 AHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAA---------GGVEALVVLAQS 652 (919)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~---------g~i~~Lv~ll~~ 652 (919)
.+.+.. -..+.-..++..+.+++++++.+|..||++++... ..-..+.++ -.+-.|-+.+.+
T Consensus 848 r~~~~s-------~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~ 920 (1233)
T KOG1824|consen 848 RRKDLS-------PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVS 920 (1233)
T ss_pred cCCCCC-------cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH
Confidence 653322 13345557788899999999999999999998842 112222111 001112222222
Q ss_pred --------------------cCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHH
Q 002459 653 --------------------CSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (919)
Q Consensus 653 --------------------~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l 712 (919)
|....+..|...+.+|+.++..+.. ..++.|-..+.++.+..+..++.+..-.
T Consensus 921 ~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfs 993 (1233)
T KOG1824|consen 921 ASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFS 993 (1233)
T ss_pred hccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------HHHHHHHHHhcCCCcchhhhhhheeeee
Confidence 1122233344444444444433211 2456677777888888888887777665
Q ss_pred cCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhH
Q 002459 713 AFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 713 ~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
.......-.......+...+.++++++ ..+|..|..++...+.+++..++
T Consensus 994 isd~p~~id~~lk~~ig~fl~~~~dpD-l~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 994 ISDQPQPIDPLLKQQIGDFLKLLRDPD-LEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred ecCCCCccCHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHccCHhHHH
Confidence 543222222223355777888899886 88999999999999999988877
No 125
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.56 E-value=0.0074 Score=67.18 Aligned_cols=288 Identities=15% Similarity=0.032 Sum_probs=176.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcChHHH---HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcc-cHHHH
Q 002459 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVA---KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAI 506 (919)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i 506 (919)
..++..|++..+.+|.+|+..++.++.--..+ +.+...|. .|.+-|..+++++.-..++++..+...-. .+..-
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34566788999999999999999988633333 22333332 35577788899998877777776665210 11111
Q ss_pred HHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
--.+.+|.|.-+|++ ....++++....+..++... +....--....-.-|+.+|...+ .+++.++...+..++..
T Consensus 880 Pi~dllPrltPILkn---rheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk-K~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKN---RHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK-KEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ChhhhcccchHhhhh---hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHh
Confidence 134568889999964 88899999999999999743 32111111234556788888776 88999999999999863
Q ss_pred CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
+--.+++..|++-|+..+...|....-++.-.+.... . ..++|.|+.--.. ++..+|...+
T Consensus 956 ----------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---p---FtVLPalmneYrt---Pe~nVQnGVL 1016 (1172)
T KOG0213|consen 956 ----------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---P---FTVLPALMNEYRT---PEANVQNGVL 1016 (1172)
T ss_pred ----------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---c---hhhhHHHHhhccC---chhHHHHhHH
Confidence 2234556666666655444444333223322221100 0 0234555544444 7778888888
Q ss_pred HHHHHcccC--cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc------
Q 002459 666 GALWGLSVS--EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS------ 737 (919)
Q Consensus 666 ~~L~~l~~~--~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~------ 737 (919)
.+|+.+-.. +..+..+. -..|.|-..|.+.+..-+..|..++.+|+.++.. .|....++++|+-
T Consensus 1017 kalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g------~g~eda~iHLLN~iWpNIl 1088 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG------TGCEDALIHLLNLIWPNIL 1088 (1172)
T ss_pred HHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC------cCcHHHHHHHHHHhhhhhc
Confidence 887776532 22222221 1345566677778888899999999999986543 3666667766653
Q ss_pred CCCHHHHHHHHHHH
Q 002459 738 SGSKMARFMAALAL 751 (919)
Q Consensus 738 ~~~~~~~~~A~~~L 751 (919)
..+|.+...-..++
T Consensus 1089 e~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1089 ETSPHVIQAFDEAM 1102 (1172)
T ss_pred CCChHHHHHHHHHH
Confidence 22455554444444
No 126
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0049 Score=67.83 Aligned_cols=299 Identities=16% Similarity=0.066 Sum_probs=182.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc------c-c
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE------E-H 502 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------~-~ 502 (919)
..-++.+..+.|..++.+|++.|..|+..-+.-+. .....++.+++.+..+|..|+..++-.+.-- + +
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 33477788888999999999999888853222222 2567788999999999999988777666521 1 2
Q ss_pred HHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002459 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (919)
Q Consensus 503 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (919)
..++. ..+...+.+.++ +.+-.++..|+.+|+.+... ++...+..+. .+..-++... ...+....-..+
T Consensus 275 e~kl~-D~aF~~vC~~v~---D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr--~ahkrpk~l~s~ 344 (823)
T KOG2259|consen 275 EEKLK-DAAFSSVCRAVR---DRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKR--TAHKRPKALYSS 344 (823)
T ss_pred hhhhH-HHHHHHHHHHHh---cCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhh--hcccchHHHHhc
Confidence 22232 235667777775 36777888888888877642 1222222221 2222111110 000111111111
Q ss_pred Hhc------CCC----CCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHH
Q 002459 582 LAA------HGD----SNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLA 650 (919)
Q Consensus 582 L~~------~~~----~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll 650 (919)
--+ +++ ...+...-++..|+--.++.-|+++-.+||.+|+..++.|+...+. .. .++..|++++
T Consensus 345 GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf 419 (823)
T KOG2259|consen 345 GEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMF 419 (823)
T ss_pred CCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh
Confidence 100 000 0112234456778888899889888889999999999999986433 21 2578899999
Q ss_pred hhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHH
Q 002459 651 QSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPA 730 (919)
Q Consensus 651 ~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~ 730 (919)
.+ ..+.+|..|..+|..++..- ..++.-++.++..|.+.++++|+..-..|.+.-....+.-.+ .+..
T Consensus 420 ND---E~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m----~v~~ 487 (823)
T KOG2259|consen 420 ND---EIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM----CVAH 487 (823)
T ss_pred cc---HHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH----HHHH
Confidence 87 88899999999999988652 223345677888888888888888888777754332222111 1223
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhCCCCchh
Q 002459 731 LVHLCSSSGSKMARFMAALALAYMFDGRMDEF 762 (919)
Q Consensus 731 Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 762 (919)
|+.-|..- |+-|-....+++.++..++..+
T Consensus 488 lL~~L~ky--PqDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 488 LLKNLGKY--PQDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HHHHhhhC--CCCcHHHHHHHHHHhccChhhH
Confidence 33333221 3345555666777776665543
No 127
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.52 E-value=0.0034 Score=68.28 Aligned_cols=258 Identities=13% Similarity=0.048 Sum_probs=163.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHH---HHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccH-HH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA---KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-GA 505 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~ 505 (919)
+..++.+|++..+.++.+|+...+.++.--.++ +.+.+.|. .|.+-|...++++.-..+.+++.+...-..+ .+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 445678899999999999999999887422111 22333332 2445566778998888888777776632111 11
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcc----hHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC----SMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (919)
---.|.+|.|..+|++ ....+..+....+..++..... ++.| ..-.-|+.+|.+.+ .+++.+|...+..
T Consensus 684 pPi~~ilP~ltPILrn---kh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~n-KeiRR~A~~tfG~ 756 (975)
T COG5181 684 PPISGILPSLTPILRN---KHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWN-KEIRRNATETFGC 756 (975)
T ss_pred CchhhccccccHhhhh---hhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence 1235678999999975 7788999999899988875432 2222 34456788888876 8999999999999
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHH
Q 002459 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQ 661 (919)
Q Consensus 582 L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~ 661 (919)
++.. +--.+++..|++-|+..+...|....-++.-.+.... -..++|.|+.--.. ++..+|
T Consensus 757 Is~a----------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------pfsVlP~lm~dY~T---Pe~nVQ 817 (975)
T COG5181 757 ISRA----------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------PFSVLPTLMSDYET---PEANVQ 817 (975)
T ss_pred HHhh----------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------chhhHHHHHhcccC---chhHHH
Confidence 8863 2234566666666665554444433333332221100 01234555444443 777888
Q ss_pred HHHHHHHHHcccC--cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcc
Q 002459 662 ERAAGALWGLSVS--EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPG 717 (919)
Q Consensus 662 ~~A~~~L~~l~~~--~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 717 (919)
...+.+++.+-.. ...+..+. -..|.|-..|.+.++.-+..|...+.+++.++.
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 8888887776532 22222221 133455566777888899999999999987643
No 128
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.51 E-value=7.9e-05 Score=73.76 Aligned_cols=180 Identities=19% Similarity=0.166 Sum_probs=110.8
Q ss_pred HHHHHHHhCCCccEEEecCCccc--hH-H----HH---HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCC
Q 002459 94 MAASLASRCMNLQKLRFRGAESA--DS-I----IH---LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFC 163 (919)
Q Consensus 94 ~l~~l~~~~~~L~~L~l~~~~~~--~~-~----~~---~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 163 (919)
.+..+..+|.+|+.|..++.... .+ + +. ..+++|+.+.++.|. .+.+..+...-|.|..+..++
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~--- 246 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHN--- 246 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeec---
Confidence 35778888999999999876321 11 1 11 146899999999986 333444444567788877652
Q ss_pred CCCCHHH----------------------HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHH
Q 002459 164 ERITSDA----------------------VKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV 221 (919)
Q Consensus 164 ~~i~~~~----------------------l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 221 (919)
..+.+.. +......+..|++|+|+++ .++ .+..-.+..|.++.|++++|.-..-.
T Consensus 247 s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~v~ 323 (490)
T KOG1259|consen 247 TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRTVQ 323 (490)
T ss_pred ccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceeeeh
Confidence 1111100 0011122457888888876 332 23333344588999999988444445
Q ss_pred HHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCC-CHHHHHHHHhcCcccceecccccC
Q 002459 222 ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV-GPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 222 ~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i-~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
.+..+++|+.||++++. ++ .+..+...+.|+++|.+++|.+ +-.++.++ -+|..|+++++.
T Consensus 324 nLa~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL----YSLvnLDl~~N~ 385 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNKIETLSGLRKL----YSLVNLDLSSNQ 385 (490)
T ss_pred hhhhcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhhHhhhhhhHhh----hhheeccccccc
Confidence 68888999999998853 21 2233334667788888888754 34455553 357777887765
No 129
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.016 Score=56.99 Aligned_cols=228 Identities=20% Similarity=0.133 Sum_probs=149.2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcccHHH
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
+.++.+.+...+++...+...+.+|+.+... .+++.|+..+.+ ..+-+|..|..+|.++.. ++
T Consensus 36 ~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~~-~~---- 100 (289)
T KOG0567|consen 36 AAIKAITKAFIDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-PE---- 100 (289)
T ss_pred HHHHHHHHhcccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-hh----
Confidence 3366677777666666666777777776643 368899988865 467788899999988883 21
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcch------HHH-------HhcChHHHHHHHHhcCCchHH-
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS------MEV-------ALAGGVHALVMLARSCKFEGV- 571 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~------~~l-------~~~g~i~~L~~ll~~~~~~~~- 571 (919)
..+.+-+..+ +.-.++.+....++..+-+.+... ... ...+-+..+-..+.+.+.+..
T Consensus 101 -----~~~~l~k~~~---dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~ 172 (289)
T KOG0567|consen 101 -----SLEILTKYIK---DPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFE 172 (289)
T ss_pred -----hHHHHHHHhc---CCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHH
Confidence 2333333332 344556666666666554321110 000 112335555555554432333
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHh
Q 002459 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ 651 (919)
Q Consensus 572 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~ 651 (919)
+..+...|+|+.. +.++..++.-+..++.-.|-.++.++..|-.. -+|+.|.+.|.
T Consensus 173 Ry~amF~LRn~g~--------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~ 228 (289)
T KOG0567|consen 173 RYRAMFYLRNIGT--------------EEAINALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLL 228 (289)
T ss_pred HHhhhhHhhccCc--------------HHHHHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHH
Confidence 3355556665542 35677888888888888888999999887544 36888988887
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 652 SCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 652 ~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
. ....+.+|..|+.+|+.++.. .+++.|.+++.+..+-|++.+..+|--+-
T Consensus 229 d-~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 229 D-ETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred h-hhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 6 357889999999999986643 36788888998888888888888776543
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0062 Score=67.08 Aligned_cols=256 Identities=19% Similarity=0.113 Sum_probs=168.2
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-C----
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-N---- 458 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~---- 458 (919)
|..+.++.+..++..|+..|..|..+.. ++. -.....++.++++++.+|..|++.+.-.+. .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L~~-----------~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK--LSK-----------ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc--ccH-----------HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 7778889999999999999988775322 111 123367889999999999988776665443 1
Q ss_pred --hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHH
Q 002459 459 --AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (919)
Q Consensus 459 --~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~ 536 (919)
......+. ..+...+...+++..-.+|-.|+++|+.+-.-+ +.|+..-.=+.++.-++.+... .+.....
T Consensus 270 e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS---ee~i~QTLdKKlms~lRRkr~a----hkrpk~l 341 (823)
T KOG2259|consen 270 ERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS---EEIIQQTLDKKLMSRLRRKRTA----HKRPKAL 341 (823)
T ss_pred cchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhH---HHHHHHHHHHHHhhhhhhhhhc----ccchHHH
Confidence 11222222 235677888888888888888888888776532 2222211122233322221111 1111111
Q ss_pred HHHhh--------------cCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchH
Q 002459 537 LANLA--------------ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (919)
Q Consensus 537 L~~L~--------------~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i 602 (919)
..+-. .+++....++..|+--.++.-+.+.- -+|+.+|...++.|+... +. -...++
T Consensus 342 ~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ss---P~-----FA~~al 412 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSS---PG-----FAVRAL 412 (823)
T ss_pred HhcCCcccCccccccCchhhccccccccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCC---CC-----cHHHHH
Confidence 12220 02223345777888888999888775 789999999999999853 21 135778
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcch
Q 002459 603 EALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (919)
Q Consensus 603 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~ 677 (919)
..|+.++.++.+.+|..|..+|..++.+-.-++. -++.+...|.+ .++++|++.-..|.+.-.++..
T Consensus 413 dfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~ee-----ql~~il~~L~D---~s~dvRe~l~elL~~~~~~d~~ 479 (823)
T KOG2259|consen 413 DFLVDMFNDEIEVVRLKAIFALTMISVHLAIREE-----QLRQILESLED---RSVDVREALRELLKNARVSDLE 479 (823)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHheecHH-----HHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999999999999877333332 35677788877 8899999888888776655544
No 131
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00013 Score=68.51 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=73.7
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCC
Q 002459 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (919)
Q Consensus 126 ~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 205 (919)
.++.++-+++. +..+++..+- .++.++.|.+. .|..+.|..+..+....|+|+.|+|++|+.||+.++..+.+. +
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~-~l~~i~~l~l~--~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-k 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLR-DLRSIKSLSLA--NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-K 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHh-ccchhhhheec--cccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-h
Confidence 35666666665 7778887764 48899999995 699999999999998889999999999999999999988765 9
Q ss_pred CCcEEEecCCCCCCH
Q 002459 206 NLTDIGFLDCLNVDE 220 (919)
Q Consensus 206 ~L~~L~l~~~~~l~~ 220 (919)
+|+.|.|.+-+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 999999888655544
No 132
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0058 Score=69.03 Aligned_cols=346 Identities=15% Similarity=0.072 Sum_probs=191.9
Q ss_pred HhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCH
Q 002459 363 RTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442 (919)
Q Consensus 363 ~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~ 442 (919)
..+...|+ .....+..+++=..++++.++..|.+.++.+-.. . +-.-...++.+.++++++
T Consensus 75 nYa~~~P~-----~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-------------~-i~ey~~~Pl~~~l~d~~~ 135 (734)
T KOG1061|consen 75 NYAKGKPD-----LAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-------------K-ITEYLCDPLLKCLKDDDP 135 (734)
T ss_pred HhhccCch-----HHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-------------H-HHHHHHHHHHHhccCCCh
Confidence 44555552 2233456666666788899998888877764422 1 122445699999999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCccc--HHHHHHhcCHHHHHHHHh
Q 002459 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH--KGAIADAGGVKALVDLIF 520 (919)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~L~~lL~ 520 (919)
.+|..++-...++-..+ .+.+...|-++.|..++.++++.+...|+.+|..+.....+ .-.+ ..-.+..++..+.
T Consensus 136 yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ 212 (734)
T KOG1061|consen 136 YVRKTAAVCVAKLFDID--PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALN 212 (734)
T ss_pred hHHHHHHHHHHHhhcCC--hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHH
Confidence 99999998888887632 34455667799999999999999999999999999885432 1111 0001122222221
Q ss_pred ccCCCCHHHHHHHHHHHHHhhcCCc--chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhc
Q 002459 521 KWSSGGDGVLERAAGALANLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598 (919)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 598 (919)
+-..+.-+.+|-.++.... .++. ...+..+...+.+.+ ..+...+..++.++... ........-
T Consensus 213 ------ec~EW~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n-~avvlsavKv~l~~~~~----~~~~~~~~~ 278 (734)
T KOG1061|consen 213 ------ECTEWGQIFILDCLAEYVPKDSREA---EDICERLTPRLQHAN-SAVVLSAVKVILQLVKY----LKQVNELLF 278 (734)
T ss_pred ------HhhhhhHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCC-cceEeehHHHHHHHHHH----HHHHHHHHH
Confidence 1122222333333333111 1110 112333333344333 33333444444443321 000001111
Q ss_pred cchHHHHHHHhCCCC-----------------------------------HHHHHHHHHHHHhhcCCcccHHHHHHcCCH
Q 002459 599 AGALEALVQLTRSPH-----------------------------------EGVRQEAAGALWNLSFDDRNREAIAAAGGV 643 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~-----------------------------------~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i 643 (919)
...-++|+.++.+.. -.++..=..++..++.+. ..-
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~---------nl~ 349 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA---------NLA 349 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh---------HHH
Confidence 122223333333222 112222233333332221 111
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHH
Q 002459 644 EALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRI 722 (919)
Q Consensus 644 ~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l 722 (919)
+.+-++......-+.+....|.+++++++..-+.. .+++..|+.+++..-..+...++..++.+-. .|.+-..
T Consensus 350 qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~- 423 (734)
T KOG1061|consen 350 QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYES- 423 (734)
T ss_pred HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhh-
Confidence 22222322222367788889999999998653321 6789999999998877888888888888876 5554433
Q ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhH
Q 002459 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 723 ~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
.++.+..-+.+=+.|..|.+-+|.++.-+..-++...
T Consensus 424 ----vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~e 460 (734)
T KOG1061|consen 424 ----VVAILCENLDSLQEPEAKAALIWILGEYAERIENALE 460 (734)
T ss_pred ----hhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHH
Confidence 3445555556556688898888888866655444433
No 133
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.0039 Score=72.05 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=133.4
Q ss_pred hccchHHHHHHHhCCCCHHHHHHHHHHHHh-hcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-
Q 002459 597 QEAGALEALVQLTRSPHEGVRQEAAGALWN-LSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS- 674 (919)
Q Consensus 597 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~- 674 (919)
..-|+.|.++++|++...++|.--+.+=.. |+.++.++..+++.+|..-+++.|.....-+++-|..|+.+|..++.+
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 367999999999999998888765544443 677888899999998888888888653345678999999999999987
Q ss_pred cchhhHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002459 675 EANCIAIGREGGVAPLIALARSE-AEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (919)
Q Consensus 675 ~~~~~~l~~~g~v~~L~~lL~~~-~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~ 752 (919)
...++...+.+.+..-+..|.++ .+-.+..++-.|..|.. .++.|-.=++.++.+.|+.+|.++ .+++|.+|..||+
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 66777788888888888888885 57799999999999976 566666667889999999999876 5999999999999
Q ss_pred HhhCCCCc
Q 002459 753 YMFDGRMD 760 (919)
Q Consensus 753 ~l~~~~~~ 760 (919)
.+..+..+
T Consensus 668 tfl~~~~d 675 (1387)
T KOG1517|consen 668 TFLSNGSD 675 (1387)
T ss_pred HHhccccc
Confidence 88776543
No 134
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.40 E-value=0.0078 Score=60.42 Aligned_cols=232 Identities=15% Similarity=0.096 Sum_probs=157.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh-cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc-
Q 002459 476 VLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA- 553 (919)
Q Consensus 476 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~- 553 (919)
++++.-++-.+-.|+.+|.++...++.|..+-.. ..-..++.++++ .-+...++.+.+-+++.++.+++..+.+-..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444445668889999999999999888777644 355678888876 4566789999999999999888776544443
Q ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC---CCHHHHHHHHHHHHhh---
Q 002459 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS---PHEGVRQEAAGALWNL--- 627 (919)
Q Consensus 554 g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~---~~~~~~~~a~~~L~~L--- 627 (919)
..+.-|+++.+....+.+.+-++..+.|++.... .......+...+ +.+.++.|.. .|++++...-.+=..|
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-K~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSP-KGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 5677888888876657788889999999987321 222333333333 3344444432 2444443321111111
Q ss_pred ----cCC------------------------cccHHHHHHc--CCHHHHHHHHhhcCCCCHH-HHHHHHHHHHHccc-Cc
Q 002459 628 ----SFD------------------------DRNREAIAAA--GGVEALVVLAQSCSNASPG-LQERAAGALWGLSV-SE 675 (919)
Q Consensus 628 ----s~~------------------------~~~~~~l~~~--g~i~~Lv~ll~~~~~~~~~-~~~~A~~~L~~l~~-~~ 675 (919)
+.. .+|...+.+. ..+..|..++++ ..+. ....|+.-+..+.. .|
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~---n~~nt~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS---NNPNTWICVACSDIFQLVRASP 389 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc---CCCCceEeeeHhhHHHHHHhCc
Confidence 110 1233344433 357888889987 3333 45567777777775 48
Q ss_pred chhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 676 ANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 676 ~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
+....+.+.|+-+.+++++.+++++|+-.|+.++..+.
T Consensus 390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 88889999999999999999999999999999998764
No 135
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.39 Score=54.13 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CCcchHH
Q 002459 472 NILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSME 549 (919)
Q Consensus 472 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~ 549 (919)
+-++.+|++..+-+|..|+.+++.+.-. |+ ++. -.+|.|++-|. ++++.++-.|+.+++.|+. ++.+--.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLe---DpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLE---DPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhcc---CCCchHHHHHHHHHHHHHhhCCccccc
Confidence 5678889999999999999999998863 22 111 14677888885 5899999999999999997 4554322
Q ss_pred HHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCH-HHHHHHHHHHH--h
Q 002459 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE-GVRQEAAGALW--N 626 (919)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~--~ 626 (919)
.-|.+.+++..+++.-+........++|+-- .+. .....+++|.+++++... .+...++.++. +
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtpl---EPR-----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL---EPR-----LGKKLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhcccc---Cch-----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 3567788887666566667778888888753 121 234678999999987643 45555655554 3
Q ss_pred hcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHccCCHHHHHH
Q 002459 627 LSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHET 704 (919)
Q Consensus 627 Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~ 704 (919)
++.. +++-..+ . -+++.|-.++.+ .++.++..++-+++.+... +...++ --+.+++.|.+.++.+|..
T Consensus 286 ~s~g~~d~~asi-q-LCvqKLr~fied---sDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 286 MSSGMSDHSASI-Q-LCVQKLRIFIED---SDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLR 355 (877)
T ss_pred hccCCCCcHHHH-H-HHHHHHhhhhhc---CCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHH
Confidence 3333 2221111 1 156777778877 8999999999999998854 322111 2355788999999999999
Q ss_pred HHHHHHHHcCC
Q 002459 705 AAGALWNLAFN 715 (919)
Q Consensus 705 a~~aL~~l~~~ 715 (919)
|+..|..|...
T Consensus 356 ALdLl~gmVsk 366 (877)
T KOG1059|consen 356 ALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHhhh
Confidence 99999999843
No 136
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.048 Score=59.26 Aligned_cols=306 Identities=14% Similarity=0.030 Sum_probs=180.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHH----hc-CCHHHHHHHHHHHHhhccCcccHHHH
Q 002459 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA----RS-MNRLVAEEAAGGLWNLSVGEEHKGAI 506 (919)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL----~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i 506 (919)
..++.|+++.|..-..|+..++.++.-+ .-.+.-|-|...+ .. +....+..++.++++.+....-...+
T Consensus 98 ~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 98 MALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 4567888898999889999998888521 1123333333333 22 35567889999999999876554555
Q ss_pred HHhcCH-HHHH-HHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcC----hHHHHHHHHhcCCchHHHHHHHHHHH
Q 002459 507 ADAGGV-KALV-DLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG----GVHALVMLARSCKFEGVQEQAARALA 580 (919)
Q Consensus 507 ~~~g~i-~~L~-~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g----~i~~L~~ll~~~~~~~~~~~a~~~L~ 580 (919)
...+.+ -.++ ..++ ...+..++-.++.+|.+-.. ..+..+..++ .++...+.-. +++.+++..+..+|.
T Consensus 172 ~~sN~il~aiv~ga~k--~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq-~~d~e~q~aafgCl~ 246 (858)
T COG5215 172 QMSNVILFAIVMGALK--NETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQ-GNDEELQHAAFGCLN 246 (858)
T ss_pred HHhhHHHHHHHHhhcc--cCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhcc-CCcHHHHHHHHHHHH
Confidence 444433 2222 2332 34556777788888877221 0111111111 2333344444 445899999999998
Q ss_pred HHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-HHHHH----------------HcCCH
Q 002459 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIA----------------AAGGV 643 (919)
Q Consensus 581 ~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~----------------~~g~i 643 (919)
.+..-. +...+ ...+.-......+.+++.+.++...|+..-..++..+-. .-.+. -...+
T Consensus 247 kim~Ly--Y~fm~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvl 323 (858)
T COG5215 247 KIMMLY--YKFMQ-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVL 323 (858)
T ss_pred HHHHHH--HHHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHH
Confidence 876531 11111 222333344445667888999988888766666654211 11111 11357
Q ss_pred HHHHHHHhhcC-C---CCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHH----ccCCHHHHHHHHHHHHHHcCC
Q 002459 644 EALVVLAQSCS-N---ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA----RSEAEDVHETAAGALWNLAFN 715 (919)
Q Consensus 644 ~~Lv~ll~~~~-~---~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL----~~~~~~v~~~a~~aL~~l~~~ 715 (919)
|.|+.+|.... + .+...-..|..+|--.+....+ ..+.+.+.+. ++++-.=++.|+-++......
T Consensus 324 P~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 324 PELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 88888886411 1 2334666777777655543221 2344444444 556677888899999888764
Q ss_pred cc-cHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 716 PG-NALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 716 ~~-~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
|. .+..-.-..++|.+...+.++ .-.++..++|+++.+++.-+
T Consensus 397 p~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 397 PCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred ccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence 42 222223357888888888744 35689999999998876543
No 137
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.047 Score=53.89 Aligned_cols=228 Identities=21% Similarity=0.180 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l 550 (919)
+..+.+...++....+...+..|.... ...+++.|+..+.. .+..+-++..|+.+|.++. +++
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~----------~~~Av~~l~~vl~d-esq~pmvRhEAaealga~~-~~~----- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ----------DEDAVPVLVEVLLD-ESQEPMVRHEAAEALGAIG-DPE----- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc----------cchhhHHHHHHhcc-cccchHHHHHHHHHHHhhc-chh-----
Confidence 555555555554555566666666655 44589999999976 5667778889999999887 333
Q ss_pred HhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCC--cccchh-------hccchHHHHHHHhCCCCH-H-HHHH
Q 002459 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS--NNSAVG-------QEAGALEALVQLTRSPHE-G-VRQE 619 (919)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~-------~~~~~i~~Lv~lL~~~~~-~-~~~~ 619 (919)
..+.+-+..+++ ..++.+.+..++..+-+.+.... ...... ...+-+..+-..|...+. . -|..
T Consensus 101 ----~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 101 ----SLEILTKYIKDP-CKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hHHHHHHHhcCC-ccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 345555666444 36777778888887766431111 000000 122334444444433322 2 2445
Q ss_pred HHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc--C
Q 002459 620 AAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS--E 697 (919)
Q Consensus 620 a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~--~ 697 (919)
|...|.|+.... +|..+++-+.. .+.-.|..++.+++.|-.. -+++.|.+.|.+ .
T Consensus 176 amF~LRn~g~Ee----------aI~al~~~l~~---~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 176 AMFYLRNIGTEE----------AINALIDGLAD---DSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETE 232 (289)
T ss_pred hhhHhhccCcHH----------HHHHHHHhccc---chHHHHHHHHHHHhhccch----------hhhHHHHHHHHhhhc
Confidence 666666654331 34555555554 7888999999999886543 367889988865 4
Q ss_pred CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 698 AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
++.||+.|+.||..++ .+..++.|.+++.+.. +.+++.+.-+|.-+
T Consensus 233 ~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~-~vv~esc~valdm~ 278 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEE-RVVRESCEVALDML 278 (289)
T ss_pred chHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcH-HHHHHHHHHHHHHH
Confidence 6889999999999988 4567888999988764 88898888887643
No 138
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.35 E-value=2e-05 Score=85.34 Aligned_cols=159 Identities=21% Similarity=0.201 Sum_probs=90.5
Q ss_pred CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 002459 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (919)
Q Consensus 125 ~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 204 (919)
..|-.|+|++.. -+.+..-.+++.+|++|.|+ .+.+....+..+. .+.+|..|++++.. -+-..+..-...+
T Consensus 150 tDLLfLDLS~Nr---Le~LPPQ~RRL~~LqtL~Ls---~NPL~hfQLrQLP-smtsL~vLhms~Tq-RTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 150 TDLLFLDLSNNR---LEMLPPQIRRLSMLQTLKLS---NNPLNHFQLRQLP-SMTSLSVLHMSNTQ-RTLDNIPTSLDDL 221 (1255)
T ss_pred HhHhhhccccch---hhhcCHHHHHHhhhhhhhcC---CChhhHHHHhcCc-cchhhhhhhccccc-chhhcCCCchhhh
Confidence 334444554433 12333334556678888885 2334444444332 24566667777653 2222233223344
Q ss_pred CCCcEEEecCCCCCC--HHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCC--HHHHHHHHhcCccc
Q 002459 205 PNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG--PITISRLLTSSKSL 280 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~--~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~--~~~l~~l~~~~~~L 280 (919)
.||..++++.| +++ .+++.++++|+.|+||++ .|+.-.+. .....+|++|++|+|+++ +.++.+ +++|
T Consensus 222 ~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~avcK----L~kL 293 (1255)
T KOG0444|consen 222 HNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMT--EGEWENLETLNLSRNQLTVLPDAVCK----LTKL 293 (1255)
T ss_pred hhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhhhhhccccchhccchHHHhh----hHHH
Confidence 78888888876 443 367888899999999985 45532211 123357888888888643 344433 5677
Q ss_pred ceecccccCCccchhHHHHH
Q 002459 281 KVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 281 ~~L~l~~c~~l~~~~~~~~~ 300 (919)
+.|.+.++. ++-+++.+-+
T Consensus 294 ~kLy~n~Nk-L~FeGiPSGI 312 (1255)
T KOG0444|consen 294 TKLYANNNK-LTFEGIPSGI 312 (1255)
T ss_pred HHHHhccCc-ccccCCccch
Confidence 777776554 6666644444
No 139
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0046 Score=71.45 Aligned_cols=236 Identities=16% Similarity=0.078 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcc-CcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHH-hhcCCcchH
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN-LAADDKCSM 548 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~-L~~~~~~~~ 548 (919)
+|..++.|-+.-..+ .|+..|...-. ++=....-..-|..|-.+++|++ ...+++-.-+-+=+. |+-|+.++.
T Consensus 474 LPiVLQVLLSQvHRl--RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS---~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVHRL--RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS---SARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc---chHhhhhhHHHHHHHHHhcCchhHH
Confidence 556666665544433 35555555544 23333444567889999999964 555555443333333 455777888
Q ss_pred HHHhcChHHHHHHHHhc-CC-chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-CHHHHHHHHHHHH
Q 002459 549 EVALAGGVHALVMLARS-CK-FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALW 625 (919)
Q Consensus 549 ~l~~~g~i~~L~~ll~~-~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~ 625 (919)
.++++++-..++..+.. .. +++-+..|+.+|+.++.+ ....++...+.+.+...+..|.++ .+-++..++-.|.
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n---f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN---FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG 625 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc---cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 89998777777777765 22 246677889999999976 556666777888888888888885 5778999999999
Q ss_pred hhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-----cchhhHH-----------HhcCCh-
Q 002459 626 NLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-----EANCIAI-----------GREGGV- 687 (919)
Q Consensus 626 ~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-----~~~~~~l-----------~~~g~v- 687 (919)
.|-.+ +..|-.=.+.++.+.|+.+|.+ +.+++|.+|+.+|+.+-.+ ++....+ .-+..+
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD---~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSD---PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcC---ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 98777 6667777778899999999987 8999999999999998753 2221111 112222
Q ss_pred ---HHHHHHHccCCHHHHHHHHHHHHHHcCCcc
Q 002459 688 ---APLIALARSEAEDVHETAAGALWNLAFNPG 717 (919)
Q Consensus 688 ---~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 717 (919)
-.++.+++++.+-++...+.+|.+++....
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 367778888999999999999999886433
No 140
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.34 E-value=0.015 Score=64.94 Aligned_cols=272 Identities=19% Similarity=0.140 Sum_probs=171.1
Q ss_pred HHHHHHHhhcChHHHHHHHHhCcHHHHHHHH----------hcCCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHH
Q 002459 448 AAKAIANLSVNAKVAKAVAEEGGINILAVLA----------RSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALV 516 (919)
Q Consensus 448 a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~ 516 (919)
|+.+|.-++.++.+...+....++..|.++- ...+..+...|+++|.|+... +..|..+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777888888888888877888888765 235889999999999999997 57888888999999999
Q ss_pred HHHhccCCC--CHHHHHHHHHHHHHhhc-CCcchHHHHhc-ChHHHHHHHHhc--------C--------CchHHHHHHH
Q 002459 517 DLIFKWSSG--GDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS--------C--------KFEGVQEQAA 576 (919)
Q Consensus 517 ~lL~~~~~~--~~~~~~~a~~~L~~L~~-~~~~~~~l~~~-g~i~~L~~ll~~--------~--------~~~~~~~~a~ 576 (919)
..+..+... +.++.-...++|.-++. ..+.+..++++ +++..+...+.. . .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999874322 66777778888877776 45566666665 777777776542 0 1234456788
Q ss_pred HHHHHHhcCCCCCCcccchhhccchHHHHHHHhC-------C--CCHHHHHHHHHHHHhhcCCcccHHHH----------
Q 002459 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTR-------S--PHEGVRQEAAGALWNLSFDDRNREAI---------- 637 (919)
Q Consensus 577 ~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~-------~--~~~~~~~~a~~~L~~Ls~~~~~~~~l---------- 637 (919)
+.+.|+..+..... . -.....++.++.++. + +......+++.+|.|+-.. +...+
T Consensus 161 KllFNit~~~~~~~---~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~ 234 (446)
T PF10165_consen 161 KLLFNITLHYPKSV---P-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE--CLDSLLSPKFQQSSL 234 (446)
T ss_pred HHHHHhhhccCccc---c-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH--HHhhhhcccCCcccc
Confidence 99999987642211 1 123444555554432 1 2345677788888887322 11110
Q ss_pred ----HHcCCHHHHHHHHhhcCC--C---CHHHHHHHHHHHHHcccC-cchhhHHHh---------------c-CChHHHH
Q 002459 638 ----AAAGGVEALVVLAQSCSN--A---SPGLQERAAGALWGLSVS-EANCIAIGR---------------E-GGVAPLI 691 (919)
Q Consensus 638 ----~~~g~i~~Lv~ll~~~~~--~---~~~~~~~A~~~L~~l~~~-~~~~~~l~~---------------~-g~v~~L~ 691 (919)
.....+..|+.+|...-. . -.+.-.--+.+|.+++.. ...|+.+.. . ..-..|+
T Consensus 235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLl 314 (446)
T PF10165_consen 235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLL 314 (446)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHH
Confidence 011235566666543100 1 112333445555565544 333333322 1 2334699
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCC
Q 002459 692 ALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGG 727 (919)
Q Consensus 692 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~ 727 (919)
+++.+..+.++..+...|+.||. ++..++++.-|
T Consensus 315 rLmt~~~~~~k~~vaellf~Lc~--~d~~~~v~~~G 348 (446)
T PF10165_consen 315 RLMTSPDPQLKDAVAELLFVLCK--EDASRFVKYVG 348 (446)
T ss_pred HHhCCCCchHHHHHHHHHHHHHh--hhHHHHHHHcC
Confidence 99988889999999999999984 33334444333
No 141
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.30 E-value=0.0019 Score=76.49 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCcccceecccccCCccchhHHHHHhhhhhh
Q 002459 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKL 306 (919)
Q Consensus 227 ~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l 306 (919)
++|+.|++++|. ++. +.. .-+++|+.|++++|.++. +..- -.++|+.|++++|. ++... ..+...+..+
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP-~~l~~sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNLP-ENLPAALQIM 393 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCCC-HhHHHHHHHH
Confidence 578888888763 331 111 113689999999987652 1111 13689999999986 54332 1222334444
Q ss_pred hhhh
Q 002459 307 LLAL 310 (919)
Q Consensus 307 ~l~~ 310 (919)
.++.
T Consensus 394 dLs~ 397 (754)
T PRK15370 394 QASR 397 (754)
T ss_pred hhcc
Confidence 4443
No 142
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.015 Score=65.91 Aligned_cols=346 Identities=16% Similarity=0.091 Sum_probs=208.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 461 (919)
+.+++.+...|-+.+.-.-..+.+-+....+ ..-+++..+++-..++++.+|..|++.++.+-.+.-.
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~------------~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ 119 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPD------------LAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT 119 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCch------------HHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH
Confidence 5677777777777776666777776654432 2235666777777778999998888887776543311
Q ss_pred HHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 462 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
.-...+|.+.++++++.+|..|+-...++-. .+.+.....|.++.|..++. +.++.+..+|+.+|..+.
T Consensus 120 ------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 120 ------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEIH 188 (734)
T ss_pred ------HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 1136789999999999999998877777765 34566667888999999995 588899999999999998
Q ss_pred cCCcch-HHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHH
Q 002459 542 ADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEA 620 (919)
Q Consensus 542 ~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 620 (919)
....+. ........+..++..+...+ + ..-+.+|..++..-. ++. .-....++.+...|.+.++.+...+
T Consensus 189 e~~~~~~~~~l~~~~~~~lL~al~ec~-E---W~qi~IL~~l~~y~p-~d~----~ea~~i~~r~~p~Lqh~n~avvlsa 259 (734)
T KOG1061|consen 189 ESHPSVNLLELNPQLINKLLEALNECT-E---WGQIFILDCLAEYVP-KDS----REAEDICERLTPRLQHANSAVVLSA 259 (734)
T ss_pred HhCCCCCcccccHHHHHHHHHHHHHhh-h---hhHHHHHHHHHhcCC-CCc----hhHHHHHHHhhhhhccCCcceEeeh
Confidence 755431 11111223444555554443 2 223344444444311 111 1123566677777777788887788
Q ss_pred HHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-----------------cc-------
Q 002459 621 AGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-----------------EA------- 676 (919)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-----------------~~------- 676 (919)
.+.+.++...-.......-....++|+.++.+ .+ +++..|..=+.-+-.. +.
T Consensus 260 vKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~---~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eK 335 (734)
T KOG1061|consen 260 VKVILQLVKYLKQVNELLFKKVAPPLVTLLSS---ES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEK 335 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceeeecc---cc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHH
Confidence 88887776653332222223345666666654 33 5554443332222110 00
Q ss_pred --hhhHHHhcC----ChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHH
Q 002459 677 --NCIAIGREG----GVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALA 750 (919)
Q Consensus 677 --~~~~l~~~g----~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~ 750 (919)
....+.... .+..|...-..-+.+....+++++++++...+.. .+.|+.|+++++... .-+...+...
T Consensus 336 leil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~-~yvvqE~~vv 409 (734)
T KOG1061|consen 336 LEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKV-DYVVQEAIVV 409 (734)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcc-cceeeehhHH
Confidence 000111111 1122222223457788899999999998643332 678999999998765 3455556666
Q ss_pred HHHhhCCCCchhHhhcccc
Q 002459 751 LAYMFDGRMDEFALIGTST 769 (919)
Q Consensus 751 L~~l~~~~~~~~~~~~~~~ 769 (919)
++.+..-.+..+..+.+.+
T Consensus 410 i~dilRkyP~~~~~vv~~l 428 (734)
T KOG1061|consen 410 IRDILRKYPNKYESVVAIL 428 (734)
T ss_pred HHhhhhcCCCchhhhhhhh
Confidence 7766665555544444433
No 143
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.085 Score=58.92 Aligned_cols=287 Identities=18% Similarity=0.150 Sum_probs=169.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcC--CHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
.+.+-|.+.|+.....|+.+++|+..- +.++.+. ..|+ ++|.++ .+-++..|+-+|..|-... -..+...
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~r-e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~ 186 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSR-EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPG 186 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccH-hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChh
Confidence 445556677888899999999998752 2333332 1233 666554 3557777777777776642 1222223
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc--chHHHHhcChHHHHHHHHhc------------CCchHHHHHH
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK--CSMEVALAGGVHALVMLARS------------CKFEGVQEQA 575 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~--~~~~l~~~g~i~~L~~ll~~------------~~~~~~~~~a 575 (919)
+....++.+|.+ .+..+...+...+..++...+ .+..+ .-++..|...... -+.|-++...
T Consensus 187 ~W~~riv~LL~D---~~~gv~ta~~sLi~~lvk~~p~~yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 187 EWAQRIVHLLDD---QHMGVVTAATSLIEALVKKNPESYKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred hHHHHHHHHhCc---cccceeeehHHHHHHHHHcCCHHHhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 457778888853 455666666666666665322 11111 0112222222211 1235677778
Q ss_pred HHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC--CHHHHH-----HHHHHHHhhcCC-cccHHHHHHcCCHHHHH
Q 002459 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQ-----EAAGALWNLSFD-DRNREAIAAAGGVEALV 647 (919)
Q Consensus 576 ~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~-----~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv 647 (919)
++.|.+.-... +......-..+.+.++...+.. ..+++. +.+.-.-+|+.+ +...+.+.+ ++..|-
T Consensus 262 ~rlLq~~p~~~----D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg 335 (938)
T KOG1077|consen 262 LRLLQIYPTPE----DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLG 335 (938)
T ss_pred HHHHHhCCCCC----CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHH
Confidence 88877773322 1112222233444444444321 112221 122222344444 333444433 578888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHHcCCcccHHHHHHcC
Q 002459 648 VLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGNALRIVEEG 726 (919)
Q Consensus 648 ~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~ 726 (919)
+++.+ ....+|..|...++.|+.++.....+..+ .+.++..|+ ..|..+++.|+..|+.||.. +|...+
T Consensus 336 ~fls~---rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~I---- 405 (938)
T KOG1077|consen 336 QFLSH---RETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQI---- 405 (938)
T ss_pred HHhhc---ccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHH----
Confidence 99987 88899999999999999987776666665 788899998 67889999999999999953 444334
Q ss_pred CHHHHHHHHhcCCCHHHHHHHHH
Q 002459 727 GVPALVHLCSSSGSKMARFMAAL 749 (919)
Q Consensus 727 ~i~~Lv~ll~~~~~~~~~~~A~~ 749 (919)
|..|++.|.+.+ ..+|+.-+.
T Consensus 406 -V~elLqYL~tAd-~sireeivl 426 (938)
T KOG1077|consen 406 -VAELLQYLETAD-YSIREEIVL 426 (938)
T ss_pred -HHHHHHHHhhcc-hHHHHHHHH
Confidence 447888888765 556655443
No 144
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.16 Score=57.74 Aligned_cols=373 Identities=17% Similarity=0.103 Sum_probs=214.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-hhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 431 RLLLDLAKSWREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
.-|.++|.+..+..+..|++-+.. |+...+... -.|..|+-..+.+.+++...---|..-+...++-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 368899999888888888776666 454443222 3678888888999999988776666666543332222
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCC
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 589 (919)
-|..+-+-|. ++++.++..|+++|..+-. .++..=.+-.+-+...+.. +.|+..|+-|+-.|=+-+
T Consensus 109 -SIntfQk~L~---DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd--- 174 (968)
T KOG1060|consen 109 -SINTFQKALK---DPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLD--- 174 (968)
T ss_pred -eHHHHHhhhc---CCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCC---
Confidence 2455556664 5888899888888766531 1111001122222334454 889999999998886542
Q ss_pred CcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002459 590 SNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALW 669 (919)
Q Consensus 590 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~ 669 (919)
++. ....++.+-.+|.+.++.|.-.|+.++-.++-+ +-.++ ++-...+.++|.+ -++--|.....+|.
T Consensus 175 ~e~-----k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLI-HknyrklC~ll~d---vdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 175 PEQ-----KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLI-HKNYRKLCRLLPD---VDEWGQVVLINMLT 242 (968)
T ss_pred hhh-----HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHh-hHHHHHHHhhccc---hhhhhHHHHHHHHH
Confidence 111 123455555677888888988899888877643 22222 2346667777765 55556666677776
Q ss_pred HcccC----cch-hhHHHhcC--------------------ChHHH----HHHHccCCHHHHHHHHHHHHHHcCCcccHH
Q 002459 670 GLSVS----EAN-CIAIGREG--------------------GVAPL----IALARSEAEDVHETAAGALWNLAFNPGNAL 720 (919)
Q Consensus 670 ~l~~~----~~~-~~~l~~~g--------------------~v~~L----~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 720 (919)
..+.. +.. -......| -+..| -.+|.+.++.|..+++++.+.++-. ++.
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~--~~~ 320 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK--NQV 320 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH--HHH
Confidence 66531 100 00000000 11122 2345677899999999999999843 221
Q ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhHhhcc---ccccccceec-------hhHHHHhhHHHHH
Q 002459 721 RIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGT---STESTSKCVS-------LDGARRMALKHIE 790 (919)
Q Consensus 721 ~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~---~~~~~~~~v~-------~~~~~~~~~~~i~ 790 (919)
...+.+|+.+|.+. +.+|......+..|+.-.+..+.-... +-......+. ..-+..-....|.
T Consensus 321 ----~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~IL 394 (968)
T KOG1060|consen 321 ----TKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEIL 394 (968)
T ss_pred ----HHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 23467999999875 468888888888888777655441111 0000000110 0001011122344
Q ss_pred HHHHhc---CChhHHHHHHhcccchhhHHhhHhhhhhccccccccchhhHHHHHHhcCCchHHHhhHHHHH
Q 002459 791 AFVLTF---SDPQAFATAAASSAPAALTQVTERARIQEAGHLRCSGAEIGRFITMLRNPSSVLKSCAAFAL 858 (919)
Q Consensus 791 ~lv~~~---~~~~~~~~a~~ala~~~~~~~~~~~~i~~~g~~~~~~~~i~~l~~~l~~~~~~~~~~aa~al 858 (919)
.=.++| .|... +|. +.-++++-+..- | .+..+...-|+.++++.++.+-..|+..+
T Consensus 395 rE~q~YI~s~d~~f--aa~---aV~AiGrCA~~~-----~--sv~~tCL~gLv~Llsshde~Vv~eaV~vI 453 (968)
T KOG1060|consen 395 RELQTYIKSSDRSF--AAA---AVKAIGRCASRI-----G--SVTDTCLNGLVQLLSSHDELVVAEAVVVI 453 (968)
T ss_pred HHHHHHHhcCchhH--HHH---HHHHHHHHHHhh-----C--chhhHHHHHHHHHHhcccchhHHHHHHHH
Confidence 334455 23322 222 233444433221 1 11122566799999999998888888777
No 145
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.032 Score=60.54 Aligned_cols=295 Identities=16% Similarity=0.088 Sum_probs=167.2
Q ss_pred cCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHH
Q 002459 367 SNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS 446 (919)
Q Consensus 367 ~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~ 446 (919)
.|++....+. |.|-.+|++.-+.++..++++++.++..+-. ++... ..+..|-.+|++.....|.
T Consensus 257 ~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-----~~~~~-----~~vs~L~~fL~s~rv~~rF 321 (898)
T COG5240 257 ENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENVG-----SQFVD-----QTVSSLRTFLKSTRVVLRF 321 (898)
T ss_pred hChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhccC-----HHHHH-----HHHHHHHHHHhcchHHHHH
Confidence 4665555433 7888899888899999999999998854311 11222 2345677788888999999
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCC
Q 002459 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSG 525 (919)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~ 525 (919)
.|+++|..++. .|+ +-.+ .=+.+-.++.+.+..+..+|..+|..-..+ ++...++ ..+..++. +-
T Consensus 322 sA~Riln~lam~~P~-kv~v----cN~evEsLIsd~Nr~IstyAITtLLKTGt~-e~idrLv-----~~I~sfvh---D~ 387 (898)
T COG5240 322 SAMRILNQLAMKYPQ-KVSV----CNKEVESLISDENRTISTYAITTLLKTGTE-ETIDRLV-----NLIPSFVH---DM 387 (898)
T ss_pred HHHHHHHHHHhhCCc-eeee----cChhHHHHhhcccccchHHHHHHHHHcCch-hhHHHHH-----HHHHHHHH---hh
Confidence 99999999986 332 1111 112344556677888888888877765543 2222222 22333332 23
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 526 GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 526 ~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
++..+..+..++..|+-.-+.++. ..+..|...|.+...-+.+..+..++..+.... ++. .+.+++.|
T Consensus 388 SD~FKiI~ida~rsLsl~Fp~k~~----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~---p~s-----kEraLe~L 455 (898)
T COG5240 388 SDGFKIIAIDALRSLSLLFPSKKL----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND---PDS-----KERALEVL 455 (898)
T ss_pred ccCceEEeHHHHHHHHhhCcHHHH----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC---chH-----HHHHHHHH
Confidence 333444455555555543222211 123344444433323556666777776665532 111 23445555
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCcc---cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHH
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSFDDR---NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG 682 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~ 682 (919)
..++++. +..+-++.+|.-|....+ +-...+. -..-+++- .+.-+|.+|+.+|..++.+... .+.
T Consensus 456 C~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvr----hIyNR~iL----EN~ivRsaAv~aLskf~ln~~d--~~~ 523 (898)
T COG5240 456 CTFIEDC--EYHQITVRILGILGREGPRAKTPGKYVR----HIYNRLIL----ENNIVRSAAVQALSKFALNISD--VVS 523 (898)
T ss_pred HHHHhhc--chhHHHHHHHHHhcccCCCCCCcchHHH----HHHHHHHH----hhhHHHHHHHHHHHHhccCccc--ccc
Confidence 5555432 223334555555554411 1111111 11122222 5667999999999888865222 112
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 683 REGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 683 ~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
.......|-+.+.+.+++||..|..+|.+|-.
T Consensus 524 ~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 524 PQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 22234456678899999999999999999874
No 146
>PRK14707 hypothetical protein; Provisional
Probab=97.22 E-value=0.68 Score=58.58 Aligned_cols=357 Identities=15% Similarity=0.066 Sum_probs=186.8
Q ss_pred HHhhcHHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 002459 376 WLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIA 453 (919)
Q Consensus 376 ~~~~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~ 453 (919)
+..+++...++-| +=.+..+...|+.+|..=...+++. . .-.+..++..+++.|+. ++..+...|+..|.
T Consensus 328 ~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l-------~-~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 328 LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPEL-------R-KDLEPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhh-------h-cccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 4556666666666 3355556666666666533333321 1 12344566677777776 56666667777777
Q ss_pred H-hhcChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHH-hhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHH
Q 002459 454 N-LSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLW-NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (919)
Q Consensus 454 ~-l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~ 530 (919)
. +..+++.++.+-.. ++...+.-|+. ++..+-..++..|. .++.+.+.+..+--. .|...+..+.+|++. +...
T Consensus 400 ~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~-~va~~LnalSKWPd~-p~c~ 476 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI-NVTQALDALSKWPDT-PICG 476 (2710)
T ss_pred HHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH-HHHHHHHHhhcCCCC-hhHH
Confidence 6 77788888888655 55566665554 66666555555554 445555666665433 355666777765433 3333
Q ss_pred HHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-
Q 002459 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT- 609 (919)
Q Consensus 531 ~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL- 609 (919)
+.+-.....|+.+.+.++.+--.++...|-.+-+-++.+...+.+.+.-..+.. .......+ ...-+..+++-|
T Consensus 477 ~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~----~~~l~~~~-~~~~~~~~lnalS 551 (2710)
T PRK14707 477 QTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD----ELQLRKAF-DAHQVVNTLKALS 551 (2710)
T ss_pred HHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc----chhhhhhh-hhHHHHHHHHhhh
Confidence 444444455665666555554444455554444444433222333333334432 11122222 222233344444
Q ss_pred CCCCHHHHHHHHHHHHhhcCCcc-cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 610 RSPHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 610 ~~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
+.++...-+.++..|..+..+.. .+..+ ..-.|..+++.|.. .+.....+..+.++-..+...+..+..+-. -.+.
T Consensus 552 Kwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSK-WP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~-q~la 628 (2710)
T PRK14707 552 KWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSK-WPDTAVCAEAVNALAERLVDEPDLRKELDP-VDVT 628 (2710)
T ss_pred cCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhccChhhhhhccH-HHHH
Confidence 34444555555555555433333 33344 33456777777754 345666666666666666655554444332 2344
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHH-HcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002459 689 PLIALA-RSEAEDVHETAAGALWN-LAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (919)
Q Consensus 689 ~L~~lL-~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~ 752 (919)
.+++-| +.++.+..+.++..|.. +...+..+.. ...-.|..+++-|+.=....+...|+..|.
T Consensus 629 n~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~-fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA 693 (2710)
T PRK14707 629 NVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKT-FNSLDVANALNALSKWPDTPVCAAAAGGMA 693 (2710)
T ss_pred HHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhh-cchHHHHHHHHhhhcCCCchHHHHHHHHHH
Confidence 455555 33444455555555433 3333333222 224456667766655444556667777765
No 147
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.21 E-value=0.02 Score=57.61 Aligned_cols=235 Identities=14% Similarity=0.072 Sum_probs=154.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCc-HHHHHHHHhc--CCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 433 LLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~-i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
|-+++++-++-.+..|+.++.++...++.|..+-.... -..++++++. ++.++|...+-++|.++.+++..+.+-+.
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~ 233 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33445555666889999999999999998888766543 5678888876 56889999999999999998777554432
Q ss_pred -cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CC-cchHHHHhcChHHHHHHHHhcC--CchHHHHHH---HH----
Q 002459 510 -GGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DD-KCSMEVALAGGVHALVMLARSC--KFEGVQEQA---AR---- 577 (919)
Q Consensus 510 -g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~-~~-~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~a---~~---- 577 (919)
..+..|+.+.+. ...+.+.+-+++++.|++. .+ .....+.-.|-+.+-++.|... +++++.... -.
T Consensus 234 ~dli~dli~iVk~--~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 234 DDLINDLIAIVKE--RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 356677777763 3456777888899999986 22 2333444445444455554422 123332211 11
Q ss_pred ----------HHHHH-----hcCCCC-----CCcccchhh--ccchHHHHHHHhCCCCHH-HHHHHHHHHHhhcCC-ccc
Q 002459 578 ----------ALANL-----AAHGDS-----NSNNSAVGQ--EAGALEALVQLTRSPHEG-VRQEAAGALWNLSFD-DRN 633 (919)
Q Consensus 578 ----------~L~~L-----~~~~~~-----~~~~~~~~~--~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~Ls~~-~~~ 633 (919)
.+..| .+.+.. -.++...+. ....+..|.+++++.++. ...-|+.-+..+.+. ++.
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~ 391 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI 391 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH
Confidence 11111 111100 001222222 345678888889887665 344466666666554 778
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 634 ~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
+..+...|+-+.+++++.+ ++++++-.|..++..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh---~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINH---DDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcC---CCchhhHHHHHHHHHHH
Confidence 9999999999999999997 99999999999987653
No 148
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.19 E-value=0.12 Score=60.55 Aligned_cols=308 Identities=15% Similarity=0.069 Sum_probs=188.1
Q ss_pred HhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 377 ~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
+...-+..-++.++.++.++..++.-+++++..-. ......+.++.++++..++...++..|...+.++.
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~----------~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~ 304 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE----------SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLL 304 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH----------HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHH
Confidence 33333555556688889999999999999875422 25778899999999999999999999999888876
Q ss_pred c--ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 457 V--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 457 ~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
. +.+. .. .....+.+++...+++..++.......+.+...=.- ......-+++...++. ....+.+..++
T Consensus 305 ~l~~~~~--d~-~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~---~~~~e~r~a~a 376 (759)
T KOG0211|consen 305 DLLDDDD--DV-VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK---DEEWEVRYAIA 376 (759)
T ss_pred HhcCCch--hh-hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc---chhhhhhHHhh
Confidence 4 2221 11 123577888888888888888877777766652100 1111223455556663 24445555555
Q ss_pred HHHHHhhc--CCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC
Q 002459 535 GALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (919)
Q Consensus 535 ~~L~~L~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 612 (919)
.-...++. +.+....+.....++.+-.+..+.+ ..++...+.....+.-. .+ +.-.-....+.+...++..
T Consensus 377 ~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~---~~---k~~ti~~llp~~~~~l~de 449 (759)
T KOG0211|consen 377 KKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPI---LP---KERTISELLPLLIGNLKDE 449 (759)
T ss_pred cchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCcc---CC---cCcCccccChhhhhhcchh
Confidence 54444443 2234445555556777777777665 67766666655555422 11 0101133456666777888
Q ss_pred CHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHH
Q 002459 613 HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLI 691 (919)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~ 691 (919)
.+.++.+....+..+-.. +........+.-++.++.+-.+ ...+++.+....+..++.... ..+.....-+.+.
T Consensus 450 ~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d---~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~ 524 (759)
T KOG0211|consen 450 DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED---LLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLR 524 (759)
T ss_pred hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc---hhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHH
Confidence 889998887666554332 2223344445567777777655 456777777777766664322 1222222223333
Q ss_pred HHHccCCHHHHHHHHHHHHHHcC
Q 002459 692 ALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 692 ~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
.-+.+....+++.|+..+..++.
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHH
Confidence 33455567888888888888875
No 149
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.14 Score=57.23 Aligned_cols=334 Identities=14% Similarity=0.044 Sum_probs=201.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhc-C
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSV-N 458 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~~l~~-~ 458 (919)
..+.+=|.+.++..+.-|..+++++-..+ ..+.+. +-+-++|.++ .+-++..|+-+|..|.. +
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re---------~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSRE---------MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHh---------HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 34555566778888888888888855321 122222 2344666664 45677777777777765 4
Q ss_pred hHHHHHHHHhC-cHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhcc----------CCCCH
Q 002459 459 AKVAKAVAEEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW----------SSGGD 527 (919)
Q Consensus 459 ~~~~~~i~~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~----------~~~~~ 527 (919)
|+. +..| -.+.++.+|.+.+-.+.-.+...+..|+...+--...+-.-++..|.++.... .-+.+
T Consensus 180 pDl----~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 180 PDL----VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred ccc----cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 432 2333 38899999998888888888888888887532222222222344444444321 11234
Q ss_pred HHHHHHHHHHHHhhcCCc--chHHHHhcChHHHHHHHHhcCC-chHHHH-----HHHHHHHHHhcCCCCCCcccchhhcc
Q 002459 528 GVLERAAGALANLAADDK--CSMEVALAGGVHALVMLARSCK-FEGVQE-----QAARALANLAAHGDSNSNNSAVGQEA 599 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~~~~--~~~~l~~~g~i~~L~~ll~~~~-~~~~~~-----~a~~~L~~L~~~~~~~~~~~~~~~~~ 599 (919)
=+....+++|.+.-..++ .+..+ ..+.+.++...+.+. ...++. .++.-.-+++.+-|+.+ ..+ .
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~---~ll--~ 328 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP---ELL--S 328 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH---HHH--H
Confidence 456667777777643222 23332 223444444444221 122222 23333345666544332 121 3
Q ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhh
Q 002459 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCI 679 (919)
Q Consensus 600 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 679 (919)
.++..|-+++.+....+|..|+..++.|+......+.+-.+ .+.++..|+. ..+..++..|+..|+.+|..+..+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkt--erDvSirrravDLLY~mcD~~Nak- 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKT--ERDVSIRRRAVDLLYAMCDVSNAK- 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcc--ccchHHHHHHHHHHHHHhchhhHH-
Confidence 56778888898999999999999999999886666666555 6788888884 378899999999999998654333
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC----CcccH-H----------HHHHcCCHHHHHHHHhcCCCHHHH
Q 002459 680 AIGREGGVAPLIALARSEAEDVHETAAGALWNLAF----NPGNA-L----------RIVEEGGVPALVHLCSSSGSKMAR 744 (919)
Q Consensus 680 ~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~----~~~~~-~----------~l~~~~~i~~Lv~ll~~~~~~~~~ 744 (919)
. .+.-|++.|.+.+..+++..+-=..-|+. +-.+- . ..++.+..-.++++.-+. ++++
T Consensus 404 ~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn--edlq 476 (938)
T KOG1077|consen 404 Q-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN--EDLQ 476 (938)
T ss_pred H-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc--hhhh
Confidence 3 34568888888777777665544444443 21111 1 112456677788877643 5677
Q ss_pred HHHHHHHH
Q 002459 745 FMAALALA 752 (919)
Q Consensus 745 ~~A~~~L~ 752 (919)
..|+..+.
T Consensus 477 ~yaak~~f 484 (938)
T KOG1077|consen 477 GYAAKRLF 484 (938)
T ss_pred HHHHHHHH
Confidence 77776654
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00038 Score=69.14 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=104.5
Q ss_pred HHHHHHhCCCccEEEecCCccchHHHH--HcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCC--CCCCCHHH
Q 002459 95 AASLASRCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDF--CERITSDA 170 (919)
Q Consensus 95 l~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~i~~~~ 170 (919)
+..+....|.|+.|+++.+.....+-. ....+|+.|.|.+.. ++...........|.++.|+++.+. ..++.++-
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c 167 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC 167 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhcccccc
Confidence 455556667777777776655433322 244577777776644 6666666666666666666553100 01112211
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHH
Q 002459 171 VKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQ 247 (919)
Q Consensus 171 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~ 247 (919)
... .-+.+++|++.+|...-......+.+.+||+..+.+..|+.-+. .+...+|.+-.|+|+...--++..+..
T Consensus 168 ~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 168 IED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred ccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence 111 12466777777774333444555667778888888887743222 334456777777777654334555555
Q ss_pred HHhcCCCCCEEEeeccCCCHH-----HHHHHHhcCcccceeccc
Q 002459 248 VWHKLPKLVGLDVSRTDVGPI-----TISRLLTSSKSLKVLCAL 286 (919)
Q Consensus 248 l~~~~~~L~~L~l~~~~i~~~-----~l~~l~~~~~~L~~L~l~ 286 (919)
+ .++|+|..|.++.+.+.+. -..-++..++++++|+=+
T Consensus 245 L-n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 L-NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred H-cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4 4678888888887654432 111123345666666644
No 151
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.11 E-value=0.011 Score=64.45 Aligned_cols=293 Identities=15% Similarity=0.134 Sum_probs=173.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 460 (919)
|...+..|++..++++.+|+...+.|+.--..+ .-.+.+...|. .|.+-|..+++++--..+.++..+.....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c-----~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC-----GETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc-----chHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 567888889999999999999988877321111 01112222232 24566667788887666666665543221
Q ss_pred HHHHH-HHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcc----cHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHH
Q 002459 461 VAKAV-AEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE----HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (919)
Q Consensus 461 ~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (919)
.+..- --.|.+|.|.-+|++....+....+..++.++...+ .++-|.- --.|++.|. +.+.++++.|..
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lk---s~nKeiRR~A~~ 752 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLK---SWNKEIRRNATE 752 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHH---HhhHHHHHhhhh
Confidence 11100 124668999999999999999999999999998642 2333221 234666775 478899999999
Q ss_pred HHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHH--HHHhcCCCCCCcccchhhccchHHHHHHHhCCCC
Q 002459 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL--ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (919)
Q Consensus 536 ~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L--~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 613 (919)
+++.++.- -|--..|..++.+-...+-+...+.++ .-.+.. + .-..++|.|+.=-..++
T Consensus 753 tfG~Is~a---------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---c-------gpfsVlP~lm~dY~TPe 813 (975)
T COG5181 753 TFGCISRA---------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEY---C-------GPFSVLPTLMSDYETPE 813 (975)
T ss_pred hhhhHHhh---------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---c-------CchhhHHHHHhcccCch
Confidence 99988731 122233344444332233333333332 222211 1 11356677766666677
Q ss_pred HHHHHHHHHHHHhhcCCccc--HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHH
Q 002459 614 EGVRQEAAGALWNLSFDDRN--REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLI 691 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~ 691 (919)
..+|...+++++-+-....+ +.++. -..|.|-+.|.+ .++.-+..|..++.+++.+... .+..++.-.|+
T Consensus 814 ~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltD---rD~vhRqta~nvI~Hl~Lnc~g---tg~eda~IHLl 885 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTD---RDPVHRQTAMNVIRHLVLNCPG---TGDEDAAIHLL 885 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcc---cchHHHHHHHHHHHHHhcCCCC---cccHHHHHHHH
Confidence 78888888888766544222 33332 234555666666 8899999999999999876322 22222333344
Q ss_pred HHH----ccCCHHHHHHHHHHHHHHc
Q 002459 692 ALA----RSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 692 ~lL----~~~~~~v~~~a~~aL~~l~ 713 (919)
++| -.+.|.+.......+-.++
T Consensus 886 NllwpNIle~sPhvi~~~~Eg~e~~~ 911 (975)
T COG5181 886 NLLWPNILEPSPHVIQSFDEGMESFA 911 (975)
T ss_pred HHhhhhccCCCcHHHHHHHHHHHHHH
Confidence 444 2345666655555554443
No 152
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.058 Score=58.66 Aligned_cols=341 Identities=15% Similarity=0.033 Sum_probs=190.8
Q ss_pred cHHHHHHhhcc--CC-----HHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHH
Q 002459 380 GAGLLLSLMQS--TQ-----EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAI 452 (919)
Q Consensus 380 gi~~Lv~lL~~--~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L 452 (919)
.+|.|+++|.. +| ..+-+.|..||.-++....+ .|.+. .+..+=+-+++++-.-+..|+.++
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----------~i~~p-Vl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----------KIMRP-VLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----------HhHHH-HHHHHHHhccCchhhhHHHHHHHh
Confidence 36999999933 22 34577788888876532221 12222 333333445667778888999999
Q ss_pred HHhhc--ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHH
Q 002459 453 ANLSV--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (919)
Q Consensus 453 ~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~ 530 (919)
+.+-. +...+..++ ...+|.+..+..++.-.++..++++++.++.. ....|-..|-++..+......-.+.+.+.
T Consensus 391 GSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~ 467 (858)
T COG5215 391 GSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRS 467 (858)
T ss_pred hhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHH
Confidence 99776 445555555 34788888888888888999999999999974 12222233444433332221122556667
Q ss_pred HHHHHHHHHhhcCC-c---chHHHHhc---ChHHHHHHHHhc-CCchHHHHHHHHHHHHHhcCCCCCCcccchhh-----
Q 002459 531 ERAAGALANLAADD-K---CSMEVALA---GGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQ----- 597 (919)
Q Consensus 531 ~~a~~~L~~L~~~~-~---~~~~l~~~---g~i~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~----- 597 (919)
.+..|...|+...- + ....+... ..+..|+..-.. .++...+..+-.+|..|.... .+.....+.
T Consensus 468 ~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~--~d~V~~~~a~~~~~ 545 (858)
T COG5215 468 INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC--PDAVSDILAGFYDY 545 (858)
T ss_pred hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc--chhHHHHHHHHHHH
Confidence 77788888877431 1 01111111 223333332221 122455666666666555431 111111110
Q ss_pred ----ccchHHHHHHHhCCCC----HHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002459 598 ----EAGALEALVQLTRSPH----EGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGAL 668 (919)
Q Consensus 598 ----~~~~i~~Lv~lL~~~~----~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L 668 (919)
-...+..+-+.+..+| ++++.+-+..|..+-+. ....+.. +...+..++++|.+ ..+..+-.....++
T Consensus 546 ~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les--~~~t~~~~dV~~aI 622 (858)
T COG5215 546 TSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILES--TKPTTAFGDVYTAI 622 (858)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhc--cCCchhhhHHHHHH
Confidence 0111122222222222 34444445555444322 1111111 11145678888886 23444555667777
Q ss_pred HHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC
Q 002459 669 WGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSG 739 (919)
Q Consensus 669 ~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~ 739 (919)
.+++.+-+.+-...-...+|.|.+.|+..+..|...|++.+..++..-+..-.+....-...|++.++++.
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~ 693 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEA 693 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChh
Confidence 78776644444444556889999999888999999999999999875444433444455678888888764
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.08 E-value=0.0014 Score=45.79 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=36.9
Q ss_pred hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 459 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
++++..+++.|+++.|+++++++++.++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4588899999999999999999999999999999999973
No 154
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.96 E-value=0.00018 Score=82.26 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=92.1
Q ss_pred ccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhC
Q 002459 127 LRELSGDYCRKITDATLSVIVARHEALESLQLGPDFC--ERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (919)
Q Consensus 127 L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 204 (919)
|+.|.+.+.. ++|..+..+ .++++|+.|+|. +. ..+.+..+ ..++.|+.|+|+|. .++. +..-...|
T Consensus 361 Lq~LylanN~-Ltd~c~p~l-~~~~hLKVLhLs--yNrL~~fpas~~----~kle~LeeL~LSGN-kL~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 361 LQELYLANNH-LTDSCFPVL-VNFKHLKVLHLS--YNRLNSFPASKL----RKLEELEELNLSGN-KLTT--LPDTVANL 429 (1081)
T ss_pred HHHHHHhcCc-ccccchhhh-ccccceeeeeec--ccccccCCHHHH----hchHHhHHHhcccc-hhhh--hhHHHHhh
Confidence 4444444433 566555433 457888888884 22 22333333 23567888888887 3322 22222346
Q ss_pred CCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccC---CCHHHHHHHHhcCcccc
Q 002459 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD---VGPITISRLLTSSKSLK 281 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~---i~~~~l~~l~~~~~~L~ 281 (919)
+.|++|...+|..+.-..+..++.|+.+|++ |.+++...+...... |+|++||++||. ++.+.+. .+.++.
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~----~l~~l~ 503 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLK----VLKSLS 503 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcccccchhhhH----Hhhhhh
Confidence 7788888777644444567788999999998 567776555444322 899999999973 3333333 244555
Q ss_pred eecccccCCccchhHHHHH
Q 002459 282 VLCALNCPVLEEENNISAV 300 (919)
Q Consensus 282 ~L~l~~c~~l~~~~~~~~~ 300 (919)
..++.-. ...|..+..+.
T Consensus 504 ~~~i~~~-~~~d~~~n~~~ 521 (1081)
T KOG0618|consen 504 QMDITLN-NTPDGNVNAFL 521 (1081)
T ss_pred heecccC-CCCccccceeh
Confidence 5555443 35555544444
No 155
>PRK14707 hypothetical protein; Provisional
Probab=96.96 E-value=1.5 Score=55.85 Aligned_cols=359 Identities=19% Similarity=0.130 Sum_probs=190.3
Q ss_pred HHhhcHHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 002459 376 WLKQGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIA 453 (919)
Q Consensus 376 ~~~~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~ 453 (919)
++.+|+...++.| +-.+..+..+|+.+|..=...+. ... .-.+...+...++.|+. ++..+...|+..|.
T Consensus 244 ~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-------~l~-~al~~q~vanalNalSKwpd~~vc~~Aa~~la 315 (2710)
T PRK14707 244 LKPQELGNALNALSKWADTPVCAAAASALAERLVDDP-------GLR-KALDPINVTQALNALSKWADLPVCAEAAIALA 315 (2710)
T ss_pred CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-------HHH-HhcCHHHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 4556766677777 44666666677777665222211 111 22333444455666655 67777777777777
Q ss_pred H-hhcChHHHHHHHHhCcHHHHHHHHhc-CC-HHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHH
Q 002459 454 N-LSVNAKVAKAVAEEGGINILAVLARS-MN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (919)
Q Consensus 454 ~-l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~ 530 (919)
. |..+++.++.+-. -++...++.|+. ++ ...+..|...-..+..+++.+..+- ..++...+..+.+|+ +++..+
T Consensus 316 ~rl~~d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp-~~~~c~ 392 (2710)
T PRK14707 316 ERLADDPELCKALNA-RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWP-DTPVCA 392 (2710)
T ss_pred HHHhccHhhhhccch-HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCC-CchHHH
Confidence 6 7778887765533 356666666665 44 4445555555566666666666654 446777778887754 333344
Q ss_pred HHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhC
Q 002459 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (919)
Q Consensus 531 ~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~ 610 (919)
..|...-..+..+.+.+..+-.. ++..++.-+..-++..+...++.+|..-..+ ..+.++.+--.+ |...++.+.
T Consensus 393 ~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~lA~~la~---d~~l~~~~~p~~-va~~LnalS 467 (2710)
T PRK14707 393 AAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSALAGRLAH---DTELCKALDPIN-VTQALDALS 467 (2710)
T ss_pred HHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHHHHHHHhc---cHHHHhhcChHH-HHHHHHHhh
Confidence 33333334555566666666444 4555555555444466666777777643333 233333332223 334444443
Q ss_pred C-CCHHHHHHHHHHHH-hhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 611 S-PHEGVRQEAAGALW-NLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 611 ~-~~~~~~~~a~~~L~-~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
. ++..+-..|+..|. .|+.+.+-++.+--++....|-.+-+. ...+...+.+.++-..+.........+...+...
T Consensus 468 KWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~--Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~ 545 (2710)
T PRK14707 468 KWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKW--PDTPICAEAASALAERVVDELQLRKAFDAHQVVN 545 (2710)
T ss_pred cCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHH
Confidence 3 34444444455554 577666555555444444444444443 3344555555555555554444333333332222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002459 689 PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~ 752 (919)
.+=.+-+.++....+.++..|..+.........-...-.|..+++-|+.-.+...-..|+..|.
T Consensus 546 ~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA 609 (2710)
T PRK14707 546 TLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALA 609 (2710)
T ss_pred HHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHH
Confidence 2323334455555555656666654433333333345567777777765433444444444444
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.88 E-value=0.00025 Score=78.77 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHhCCCccEEEecCCcc---chHHHHHcCCCccEEEecCCCCCCHHHHHHH
Q 002459 95 AASLASRCMNLQKLRFRGAES---ADSIIHLQARNLRELSGDYCRKITDATLSVI 146 (919)
Q Consensus 95 l~~l~~~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l 146 (919)
+..+....+.++.|.+-.... ...+-...++.|+.|.+.+|.--+..++..+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH
Confidence 344555556666666644332 2333444678999999999974444444444
No 157
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.84 E-value=0.11 Score=61.74 Aligned_cols=289 Identities=14% Similarity=0.000 Sum_probs=171.2
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-----cc
Q 002459 430 IRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-----EE 501 (919)
Q Consensus 430 l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-----~~ 501 (919)
+..+...+++ .....+..|+..|..++. +++.+- ...+|-++.++.++...||..|+.+|..+... +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3445555555 467788899999999987 554432 23589999999999999999999998887762 23
Q ss_pred cHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002459 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (919)
Q Consensus 502 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (919)
+...+.+. ..|.|-.++.+ +...-++..-+..|..||... -.+.+.+.-.....++.+.++.
T Consensus 500 daniF~eY-lfP~L~~l~~d--~~~~~vRiayAsnla~LA~tA---~rFle~~q~~~~~g~~n~~nse------------ 561 (1431)
T KOG1240|consen 500 DANIFPEY-LFPHLNHLLND--SSAQIVRIAYASNLAQLAKTA---YRFLELTQELRQAGMLNDPNSE------------ 561 (1431)
T ss_pred cchhhHhh-hhhhhHhhhcc--CccceehhhHHhhHHHHHHHH---HHHHHHHHHHHhcccccCcccc------------
Confidence 33344343 56777777753 234445555566666666211 0111111111111122222211
Q ss_pred HhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHc----CCHHHHHHHHhhcCCCC
Q 002459 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA----GGVEALVVLAQSCSNAS 657 (919)
Q Consensus 582 L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~----g~i~~Lv~ll~~~~~~~ 657 (919)
. .++.+.+....-....+-+....+|..+++-|+..-+..|.-|+.. +.+. -.+..|+.+|.+ .+
T Consensus 562 -t-~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLND---kD 630 (1431)
T KOG1240|consen 562 -T-APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLND---KD 630 (1431)
T ss_pred -c-ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcC---cc
Confidence 0 0000000000011123334455566666777888777777766543 2222 246788888887 78
Q ss_pred HHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc
Q 002459 658 PGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS 737 (919)
Q Consensus 658 ~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~ 737 (919)
..+|.+-...|..++.--.- .=++++.+|.|.+-|.++.+.|...|+++|..|+...--++..+. ..++...-+|..
T Consensus 631 w~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCH 707 (1431)
T ss_pred HHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeC
Confidence 88888777777666532111 123556778888889999999999999999999875544433221 234455556665
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 002459 738 SGSKMARFMAALALAYMF 755 (919)
Q Consensus 738 ~~~~~~~~~A~~~L~~l~ 755 (919)
++ .-+|..+...+....
T Consensus 708 PN-~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 708 PN-LWIRRAVLGIIAAIA 724 (1431)
T ss_pred ch-HHHHHHHHHHHHHHH
Confidence 64 678888887776554
No 158
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.83 E-value=0.003 Score=43.97 Aligned_cols=38 Identities=42% Similarity=0.526 Sum_probs=35.1
Q ss_pred hHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 002459 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (919)
Q Consensus 420 ~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (919)
++..+.+.|+++.|+++|++++++++..++++|+|++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 56788999999999999999999999999999999873
No 159
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00049 Score=67.72 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=83.2
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEE
Q 002459 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (919)
Q Consensus 179 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L 258 (919)
.+.+.|+.+|| +++|- .+.+.+|.|+.|.|+-|.--+-..+..|++|+.|.|..+ .|.+-.-.....++|+|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 57889999999 78874 345667999999999884334477899999999999875 45544434445789999999
Q ss_pred EeeccC----CCHHHHHHHHhcCcccceecccccCCccchhHHHHH
Q 002459 259 DVSRTD----VGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 259 ~l~~~~----i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~ 300 (919)
-|..|. -+.+--...+..+|||+.|| ..-+|++.+..+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~AL 136 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEAL 136 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHHH
Confidence 998742 34455566677899999987 2336666655444
No 160
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.21 Score=56.44 Aligned_cols=327 Identities=14% Similarity=0.073 Sum_probs=169.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHH
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAK 463 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 463 (919)
+-+=|+++++-++-...+.|++|-.. .+ =...+|.+...|.+..+-+|+.|.-+++.+..+.+
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE~-------------EL-lepl~p~IracleHrhsYVRrNAilaifsIyk~~~--- 166 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKEP-------------EL-LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--- 166 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCcH-------------HH-hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---
Confidence 33446788899999999999885421 11 12456777888999999999999999998876411
Q ss_pred HHHHhCcHHHHH-HHH-hcCCHHHHHHHHHHHHhhccCc------ccHHHHHHhcCH--HHHHHHHhccCCCCHHHHHHH
Q 002459 464 AVAEEGGINILA-VLA-RSMNRLVAEEAAGGLWNLSVGE------EHKGAIADAGGV--KALVDLIFKWSSGGDGVLERA 533 (919)
Q Consensus 464 ~i~~~g~i~~Lv-~lL-~~~~~~~~~~a~~~L~~Ls~~~------~~~~~i~~~g~i--~~L~~lL~~~~~~~~~~~~~a 533 (919)
.++ .-.|.|+ .+| ...|+..++.|.-.|...-... .+..++-.-|.+ -.+++++++....++..+..-
T Consensus 167 ~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~ 244 (948)
T KOG1058|consen 167 HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY 244 (948)
T ss_pred hhc--CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH
Confidence 010 1123333 333 3457777777765554443211 111111111111 112233332222334444444
Q ss_pred HHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhh---------------c
Q 002459 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ---------------E 598 (919)
Q Consensus 534 ~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~---------------~ 598 (919)
..++.++.........+-..|.+- .-+++|.....|+.++..|.... +++...++ -
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv------~lS~~p~alk~Aa~~~i~l~~ke---sdnnvklIvldrl~~l~~~~~~il 315 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLV------TLSNDPTALKAAASTYIDLLVKE---SDNNVKLIVLDRLSELKALHEKIL 315 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEE------EccCCHHHHHHHHHHHHHHHHhc---cCcchhhhhHHHHHHHhhhhHHHH
Confidence 445555444332211111112110 11122344444444444333321 11111111 1
Q ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHh-----h---cCCCCHHHHHHHHHHHHH
Q 002459 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ-----S---CSNASPGLQERAAGALWG 670 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~-----~---~~~~~~~~~~~A~~~L~~ 670 (919)
.|.+-.++..|.+++-+++..+......|+... -+..++.+|+ + .+..+..-|..-..++..
T Consensus 316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 233444556677777788887777777665442 2333333332 1 011234456677777777
Q ss_pred cccC-cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Q 002459 671 LSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAA 748 (919)
Q Consensus 671 l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~ 748 (919)
.+.. ++.. +..++.|++.+.+.++......+..+..... .|..|..+++ .|++-+..-.+..+-..|+
T Consensus 386 cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgal 455 (948)
T KOG1058|consen 386 CAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGAL 455 (948)
T ss_pred HhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHH
Confidence 7754 4332 3467889999999988877777777776654 6666655543 4444443333344666777
Q ss_pred HHHHHhhCCC
Q 002459 749 LALAYMFDGR 758 (919)
Q Consensus 749 ~~L~~l~~~~ 758 (919)
|.++.-+.+.
T Consensus 456 wi~GeYce~~ 465 (948)
T KOG1058|consen 456 WILGEYCEGL 465 (948)
T ss_pred HHHHHHHhhh
Confidence 7777554443
No 161
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.72 E-value=0.00086 Score=78.84 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCcccceec
Q 002459 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~ 284 (919)
++|+.|++++| .++... ...++|+.|+++++. ++. +....++|+.|++++|.++. +..-+..+++|+.|+
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-~l~s~L~~LdLS~N~-Lss-----IP~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-VLPSELKELMVSGNR-LTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCC-cccCCC-CcccCCCEEEccCCc-CCC-----CCcchhhhhhhhhccCcccc--cChHHhhccCCCeEE
Confidence 45666666665 333210 112467777777653 321 11112356677777765541 222223467788888
Q ss_pred ccccCCccchh
Q 002459 285 ALNCPVLEEEN 295 (919)
Q Consensus 285 l~~c~~l~~~~ 295 (919)
+++++ ++...
T Consensus 452 Ls~N~-Ls~~~ 461 (788)
T PRK15387 452 LEGNP-LSERT 461 (788)
T ss_pred CCCCC-CCchH
Confidence 87776 55444
No 162
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=2.2 Score=50.80 Aligned_cols=314 Identities=15% Similarity=0.026 Sum_probs=168.4
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHH
Q 002459 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKG 504 (919)
Q Consensus 427 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~ 504 (919)
+++++.|++.|++.|..++..|++-++.++. .| ..+++. .|...+.++.. +++..-..|+-+|..++..-=...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3677889999999999999999999999987 44 222222 45566665544 346666788999999987421111
Q ss_pred HHHHhcCHHHHHHHHhc-----cCCCCHHHHHHHHHHHHHhhcCCcch--HHHHhcChHHHHHHHHhcCCchHHHHHHHH
Q 002459 505 AIADAGGVKALVDLIFK-----WSSGGDGVLERAAGALANLAADDKCS--MEVALAGGVHALVMLARSCKFEGVQEQAAR 577 (919)
Q Consensus 505 ~i~~~g~i~~L~~lL~~-----~~~~~~~~~~~a~~~L~~L~~~~~~~--~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (919)
...+ ..+|.+++-+.- ..+....++..|+.++|.++...+.. +.+...=.-..|...+-+.+ ...+..|..
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre-vncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE-VNCRRAASA 493 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch-hhHhHHHHH
Confidence 1111 134444443310 13345578999999999998743322 22222111122223333443 667777777
Q ss_pred HHHHHh-cCCCCCC---------------------cccchhh-----ccchHHHHHHH-hCCCCHHHHHHHHHHHHhhcC
Q 002459 578 ALANLA-AHGDSNS---------------------NNSAVGQ-----EAGALEALVQL-TRSPHEGVRQEAAGALWNLSF 629 (919)
Q Consensus 578 ~L~~L~-~~~~~~~---------------------~~~~~~~-----~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~ 629 (919)
|+.... ..+..+. .....+. .+.++..|+.. +.+.+..+|+.++++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 776443 3221100 0000001 11223333322 445689999999999999875
Q ss_pred CcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhh----HHHh---cC---ChHHHHHHH-ccC-
Q 002459 630 DDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCI----AIGR---EG---GVAPLIALA-RSE- 697 (919)
Q Consensus 630 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~----~l~~---~g---~v~~L~~lL-~~~- 697 (919)
. ..+....+.+++++....+ .+...+.....+.+.+...-.... .+.+ +| .++++..-- ..+
T Consensus 574 ~---~pk~~a~~~L~~lld~~ls---~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~ 647 (1133)
T KOG1943|consen 574 T---EPKYLADYVLPPLLDSTLS---KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQ 647 (1133)
T ss_pred h---hHHhhcccchhhhhhhhcC---CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccch
Confidence 4 2233444677888888776 777777765555554442110000 0000 11 123332222 112
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002459 698 AEDVHETAAGALWNLAFNP-GNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYM 754 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~~~-~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l 754 (919)
..-.+...++.+.++..+. ......+.++--..+.+.+... ..+|..|.++++.+
T Consensus 648 ~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~--n~i~~~av~av~~l 703 (1133)
T KOG1943|consen 648 GTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP--NQIRDAAVSAVSDL 703 (1133)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHH
Confidence 2345666677777776532 2222333333333444444222 36777777777644
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.66 E-value=0.0058 Score=51.67 Aligned_cols=65 Identities=31% Similarity=0.390 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHh--cCCHHHHHHHHHHHHhhccC-cccHHHHHH
Q 002459 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR--SMNRLVAEEAAGGLWNLSVG-EEHKGAIAD 508 (919)
Q Consensus 444 ~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~ 508 (919)
.+...++++++++. ++.++..+.+.|||+.++.... ..+|-+++.|..++.||+.+ ++|+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46678899999998 8999999999999999998764 46899999999999999996 578877764
No 164
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.61 E-value=0.0012 Score=77.61 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=16.9
Q ss_pred CCCCEEEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
++|+.|++++|.++. +.. ..++|+.|++++|.
T Consensus 382 ~~L~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N~ 413 (788)
T PRK15387 382 SGLKELIVSGNRLTS--LPV---LPSELKELMVSGNR 413 (788)
T ss_pred cccceEEecCCcccC--CCC---cccCCCEEEccCCc
Confidence 356666666665441 111 13456666666665
No 165
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.60 E-value=0.12 Score=50.38 Aligned_cols=181 Identities=15% Similarity=0.058 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhc----CCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 002459 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~ 603 (919)
.-.-+|+..|-.++..++.+..+.++...-.+-.++.. .+.+..+-.++++++.|...+| .+.-..+...++++
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd--~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDD--QEVIRFLLTTEIVP 171 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCc--HHHHHHHHHhhhHH
Confidence 34456777888889999999999999887777777763 3346777889999999998764 34566677899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHc--------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCc
Q 002459 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (919)
Q Consensus 604 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--------g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~ 675 (919)
.++..++.+++..+..|..++..+-.++.+-.++.+. ..+..++.-+.+ .+++.+-..+.++..+++.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~--~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS--MPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999988887765555442 122333333322 388899999999999999999
Q ss_pred chhhHHHhc--CCh-H-HHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 676 ANCIAIGRE--GGV-A-PLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 676 ~~~~~l~~~--g~v-~-~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
..|..+... +.+ . ..-.+++ +|+..+..-...+.|++
T Consensus 250 rar~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 250 RARAALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhc
Confidence 888777653 111 1 1222232 45666666666666665
No 166
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.59 E-value=0.0028 Score=70.95 Aligned_cols=191 Identities=17% Similarity=0.145 Sum_probs=118.2
Q ss_pred ccEEEecCCCCCCHHHHHHHH---hcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCC----CCCEEEecCCCCCCHHHHHH
Q 002459 127 LRELSGDYCRKITDATLSVIV---ARHEALESLQLGPDFCERITSDAVKAIALCCP----KLKKLRLSGIRDICGDAINA 199 (919)
Q Consensus 127 L~~L~l~~c~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~----~L~~L~L~~~~~~~~~~l~~ 199 (919)
+..|.|.+|. +.+.++..++ ...++|+.|+++ + +.+++.+...+....+ .|++|.+..| .+++++...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~--~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLS--G-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcc--c-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHH
Confidence 6777777776 5555555444 355678888885 3 3667877777776543 4567778887 677666555
Q ss_pred HHh---hCCCCcEEEecCCCCCCHH------HHh----CCCCCCEEeecCCCCCCHHHHHHHH---hcCCC-CCEEEeec
Q 002459 200 LAK---LCPNLTDIGFLDCLNVDEV------ALG----NVLSVRFLSVAGTSNMKWGVVSQVW---HKLPK-LVGLDVSR 262 (919)
Q Consensus 200 l~~---~~~~L~~L~l~~~~~l~~~------~l~----~~~~L~~L~l~~c~~i~~~~l~~l~---~~~~~-L~~L~l~~ 262 (919)
+.. .++.|+.|+++.|...... ++. ...++++|++++|. +++..+..+. ...+. +..|++.+
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh
Confidence 543 2567778888877543221 122 34678888888884 5555554443 33344 66688888
Q ss_pred cCCCHHHHHHHHhcC----cccceecccccCCccchhHHHHH------hhhhhhhhhhccchHHHHHHhhhc
Q 002459 263 TDVGPITISRLLTSS----KSLKVLCALNCPVLEEENNISAV------KSKGKLLLALFTDIFKALASLFAE 324 (919)
Q Consensus 263 ~~i~~~~l~~l~~~~----~~L~~L~l~~c~~l~~~~~~~~~------~~~~~l~l~~~~~~~~~~~~l~~~ 324 (919)
|.+.|.++..+...+ +.++.++++.|+ +++.+...+. .....+.+..+.-...+...+...
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~ 313 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEA 313 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHH
Confidence 888888777776643 455888899888 6665533332 223333344444445555555554
No 167
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.57 E-value=0.0037 Score=46.98 Aligned_cols=55 Identities=29% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHH
Q 002459 658 PGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (919)
Q Consensus 658 ~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l 712 (919)
+.+|..|+++|++++........-.....++.|+.+|.++++.|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999886644443345556899999999999999999999999875
No 168
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.57 E-value=0.00046 Score=53.28 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccC
Q 002459 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (919)
|+|++|++++| .++. ..+.++++|++|+++++ .++.-. ...+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 45555555555 3332 33445555555555543 222111 1223455555555555543
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=1 Score=53.39 Aligned_cols=315 Identities=17% Similarity=0.080 Sum_probs=179.1
Q ss_pred HHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-CHHHHHHHHHHHHH
Q 002459 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIAN 454 (919)
Q Consensus 376 ~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~~ 454 (919)
+.+..+..|+..+++.+..++..|++-++.++...+.+ .....+...++++.-. ++..-..|+-+|+.
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----------Lad~vi~svid~~~p~e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----------LADQVIGSVIDLFNPAEDDSAWHGACLALAE 406 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHhcCcCCchhHHHHHHHHHHH
Confidence 45566788999999999999999999999988765532 2224556777766553 46666789999999
Q ss_pred hhcChHHHHHHHHhCcHHHHHHHHhc--------CCHHHHHHHHHHHHhhccCcccH--HHHHHhcCHHHHHHHHhccCC
Q 002459 455 LSVNAKVAKAVAEEGGINILAVLARS--------MNRLVAEEAAGGLWNLSVGEEHK--GAIADAGGVKALVDLIFKWSS 524 (919)
Q Consensus 455 l~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~L~~lL~~~~~ 524 (919)
|+.-.=...... ...+|.+++-|.. ....+|..|+.++|.++...+.. .-+...=.-..|...++ +
T Consensus 407 LA~rGlLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF---D 482 (1133)
T KOG1943|consen 407 LALRGLLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF---D 482 (1133)
T ss_pred HHhcCCcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc---C
Confidence 985221111111 1135555555532 24569999999999999854222 11222211222334443 3
Q ss_pred CCHHHHHHHHHHHHHhhcCCc----c----------------------hHHHHh-cChHHHHHHHHhcC----CchHHHH
Q 002459 525 GGDGVLERAAGALANLAADDK----C----------------------SMEVAL-AGGVHALVMLARSC----KFEGVQE 573 (919)
Q Consensus 525 ~~~~~~~~a~~~L~~L~~~~~----~----------------------~~~l~~-~g~i~~L~~ll~~~----~~~~~~~ 573 (919)
..-..++.|..++-....... + ...+.+ .|...++++-+... -+..+++
T Consensus 483 revncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 483 REVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred chhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHH
Confidence 667788888888765543211 1 011222 24455555544322 2478999
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHH----HHHH---cC---CH
Q 002459 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRE----AIAA---AG---GV 643 (919)
Q Consensus 574 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~----~l~~---~g---~i 643 (919)
.++++|.+|+... + .......+++++....+.+...+..+..+...+........ .+.+ ++ .+
T Consensus 563 laa~aL~~Ls~~~---p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii 635 (1133)
T KOG1943|consen 563 LAAYALHKLSLTE---P----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSII 635 (1133)
T ss_pred HHHHHHHHHHHhh---H----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhc
Confidence 9999999998742 1 23355778888888888888777765555544433211111 0001 11 12
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 644 EALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 644 ~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
+++...-.. .....-.+...+..+-+++.+ ......++..+.-..+.+.+...+ .++..|..++..++.
T Consensus 636 ~~~~~~~~~-rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 636 PPICDRYFY-RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred cHHHHHHhc-cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 222222211 001133444556666666654 333333444434444445553334 788889999888875
No 170
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.51 E-value=0.37 Score=57.06 Aligned_cols=237 Identities=19% Similarity=0.171 Sum_probs=143.1
Q ss_pred HHHHhCcHHHHHHHHhc-----CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhcc-CCCC----HHHHHHH
Q 002459 464 AVAEEGGINILAVLARS-----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW-SSGG----DGVLERA 533 (919)
Q Consensus 464 ~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~----~~~~~~a 533 (919)
.+.+.||+..++.++.+ .........+..|...+.-+.||+++.+.|+++.|++.+... ..+. +.+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34567899999999976 355677788889999999999999999999999999887521 2222 5677777
Q ss_pred HHHHHHhhcCCcchH-----HHHh--------cChHHHHHHHHhcC---CchHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 002459 534 AGALANLAADDKCSM-----EVAL--------AGGVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (919)
Q Consensus 534 ~~~L~~L~~~~~~~~-----~l~~--------~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 597 (919)
+.++..+........ .... ..-+..++..+.++ .++.+....++.|-+|+.+.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~----------- 260 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGN----------- 260 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCC-----------
Confidence 766666654322110 0011 12366666666643 23777888999999999762
Q ss_pred ccchHHHHHHHhCC------------CCHHHHHHHHHHHHhhcC----Cc---ccHHHHHHcCCHHHHHHHHhhcCC---
Q 002459 598 EAGALEALVQLTRS------------PHEGVRQEAAGALWNLSF----DD---RNREAIAAAGGVEALVVLAQSCSN--- 655 (919)
Q Consensus 598 ~~~~i~~Lv~lL~~------------~~~~~~~~a~~~L~~Ls~----~~---~~~~~l~~~g~i~~Lv~ll~~~~~--- 655 (919)
...++.|++.+.. ++..+ .+..++.++. +. .-++.+++.|.++..++.|....+
T Consensus 261 -~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~ 336 (802)
T PF13764_consen 261 -EEKMDALVEHFKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLK 336 (802)
T ss_pred -HHHHHHHHHHHHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccc
Confidence 2233444443321 11122 2334444433 32 228899999999999998875221
Q ss_pred --CCHHHHH--------HHHHHHHHcccCcchhhHHHhcCChHHHHHHHccC--CHHHHHHHHHHHHHHcCCc
Q 002459 656 --ASPGLQE--------RAAGALWGLSVSEANCIAIGREGGVAPLIALARSE--AEDVHETAAGALWNLAFNP 716 (919)
Q Consensus 656 --~~~~~~~--------~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~ 716 (919)
.+++.+. .++..|.-++......+.+...+++ ++++-|..- +..|-.-|=..|-.+..++
T Consensus 337 ~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 337 NTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 2333333 4677777777765545555666666 555666432 2334333444444444433
No 171
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.49 E-value=0.0022 Score=75.89 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCccEEEecCCccchHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCC
Q 002459 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (919)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~ 182 (919)
++|+.|+|++|.... +......+|+.|+++++. ++. +.. ..+++|+.|+|+ +| .++.. .. ...++|+
T Consensus 241 ~~L~~L~Ls~N~L~~-LP~~l~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls--~N-~Lt~L--P~--~lp~sL~ 307 (754)
T PRK15370 241 DTIQEMELSINRITE-LPERLPSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVY--DN-SIRTL--PA--HLPSGIT 307 (754)
T ss_pred ccccEEECcCCccCc-CChhHhCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECC--CC-ccccC--cc--cchhhHH
Confidence 468888888876542 111223578888887653 442 211 123578888885 23 33321 00 0013466
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeec
Q 002459 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (919)
Q Consensus 183 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (919)
.|+++++ .++. +.. ...++|+.|++++| .++...-.-+++|+.|++++|. ++.-. ..+ .++|++|+|++
T Consensus 308 ~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~-L~~LP-~~l---p~~L~~LdLs~ 376 (754)
T PRK15370 308 HLNVQSN-SLTA--LPE--TLPPGLKTLEAGEN-ALTSLPASLPPELQVLDVSKNQ-ITVLP-ETL---PPTITTLDVSR 376 (754)
T ss_pred HHHhcCC-cccc--CCc--cccccceeccccCC-ccccCChhhcCcccEEECCCCC-CCcCC-hhh---cCCcCEEECCC
Confidence 6666655 2321 110 11245666666665 2332111112466666666652 32100 011 24566666666
Q ss_pred cCC
Q 002459 263 TDV 265 (919)
Q Consensus 263 ~~i 265 (919)
|.+
T Consensus 377 N~L 379 (754)
T PRK15370 377 NAL 379 (754)
T ss_pred CcC
Confidence 544
No 172
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.41 E-value=0.063 Score=54.61 Aligned_cols=179 Identities=18% Similarity=0.134 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC---cchHHHHhc--ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 002459 523 SSGGDGVLERAAGALANLAADD---KCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (919)
Q Consensus 523 ~~~~~~~~~~a~~~L~~L~~~~---~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 597 (919)
.+.+-+.+..++..|..+.... +....+.+. ..+..+...+.+.. ..+...|+.++..++..- .....-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l----~~~~~~~ 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQL----GSHFEPY 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHH----GGGGHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH----hHhHHHH
Confidence 4567778888888888887644 223333221 34445555555544 557788889898888642 1111222
Q ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcc-cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc
Q 002459 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (919)
Q Consensus 598 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~ 676 (919)
-...++.|+..+.++...+++.|..+|..+..... ....+ .+.+.....+ .++.+|..++..+..+...-.
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKS---KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT----S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcc
Confidence 45678888888988888999999999999887744 11111 3445555555 899999999999988875422
Q ss_pred -hhhHHHh----cCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 677 -NCIAIGR----EGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 677 -~~~~l~~----~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
....+.. ...++.+...+.+++++||..|-.+++.+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2222222 3366778888899999999999999999864
No 173
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.40 E-value=0.004 Score=38.25 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.8
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHH
Q 002459 226 VLSVRFLSVAGTSNMKWGVVSQVW 249 (919)
Q Consensus 226 ~~~L~~L~l~~c~~i~~~~l~~l~ 249 (919)
|++|++|+|++|.+++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777777665
No 174
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.00038 Score=68.50 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCcEEEecCCCCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCH-HHHHHHHhcCccccee
Q 002459 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP-ITISRLLTSSKSLKVL 283 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~L 283 (919)
..|+.|++.++...+-..+..+|+|++|.++.+..-...++..++..+|+|++|++++|.+.+ ..+.. +...++|..|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhh
Confidence 567777777775555566777889999999876444456677778888999999999987653 23332 2347889999
Q ss_pred cccccCC
Q 002459 284 CALNCPV 290 (919)
Q Consensus 284 ~l~~c~~ 290 (919)
++.+|..
T Consensus 122 dl~n~~~ 128 (260)
T KOG2739|consen 122 DLFNCSV 128 (260)
T ss_pred hcccCCc
Confidence 9999973
No 175
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.35 E-value=0.067 Score=54.41 Aligned_cols=182 Identities=19% Similarity=0.110 Sum_probs=107.6
Q ss_pred ccCCHHHHHHHHHHHHHhhc-C--hHHHHHHHHh--CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCH
Q 002459 438 KSWREGLQSEAAKAIANLSV-N--AKVAKAVAEE--GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (919)
Q Consensus 438 ~~~~~~~~~~a~~~L~~l~~-~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i 512 (919)
.+.+=+.|..|+..|..+.. + .+....+.+. ..+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34566778888888888765 3 2333333222 23456666667777889999999999999853222211133367
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcc
Q 002459 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (919)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 592 (919)
+.|++.+. +....+++.|..+|..+.........+ .++.+.....+.+ +.++..++..+..+..... ..
T Consensus 97 ~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn-~~vR~~~~~~l~~~l~~~~---~~ 165 (228)
T PF12348_consen 97 PPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKN-PQVREECAEWLAIILEKWG---SD 165 (228)
T ss_dssp HHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcc---ch
Confidence 77777774 467889999999999998754411111 1344455555665 8999999999988876421 11
Q ss_pred cchhhc----cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC
Q 002459 593 SAVGQE----AGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 593 ~~~~~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (919)
...+.. ...++.+...+.+.++++|+.|-.+++.+...
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 122222 35777888889999999999999999988554
No 176
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.34 E-value=0.0021 Score=64.47 Aligned_cols=46 Identities=26% Similarity=0.566 Sum_probs=40.8
Q ss_pred cCcCCCCHHHHHHHHc-----CCCHHHHHHHHhhcHhHHHHhcCCCCcccc
Q 002459 38 VDWTSLPDDTVIQLMS-----CLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (919)
Q Consensus 38 ~~~~~LP~eil~~If~-----~L~~~d~~~~~~vck~w~~l~~~~~lw~~l 83 (919)
.+|..||||++..||. .++.+++.+++.|||.|+..+++|.+|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 4478999999999997 567899999999999999999999999644
No 177
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.30 E-value=0.0094 Score=44.74 Aligned_cols=54 Identities=22% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002459 442 EGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (919)
Q Consensus 442 ~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 496 (919)
+.+|..|+++|++++. .++.-.. .....++.|+.+|+++++.||..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887 3333333 3445799999999999999999999999875
No 178
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.29 E-value=0.0085 Score=64.52 Aligned_cols=160 Identities=18% Similarity=0.244 Sum_probs=96.3
Q ss_pred HhCCCccEEEecCCccchHHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCC
Q 002459 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (919)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~ 179 (919)
..|+++++|++++|.... +. ..-++|++|.+++|.+++. +... ..++|++|+++ .|..+. .-.+
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP-~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls--~Cs~L~--------sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LP-VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVC--HCPEIS--------GLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cC-CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEcc--Cccccc--------cccc
Confidence 346899999999994332 22 2234799999999987532 1111 13589999995 575553 1135
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHh-CC-CCCCEEeecCCCCCCHHHHHHHHhcC-CCCC
Q 002459 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALG-NV-LSVRFLSVAGTSNMKWGVVSQVWHKL-PKLV 256 (919)
Q Consensus 180 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~-~~-~~L~~L~l~~c~~i~~~~l~~l~~~~-~~L~ 256 (919)
+|++|.+.+. .... +....++|++|.+.++.......+. .+ ++|++|++++|..+. +...+ ++|+
T Consensus 113 sLe~L~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP~SLk 180 (426)
T PRK15386 113 SVRSLEIKGS-ATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII------LPEKLPESLQ 180 (426)
T ss_pred ccceEEeCCC-CCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc------CcccccccCc
Confidence 7899998754 2221 2233367888888653222111111 23 589999999987552 11223 4899
Q ss_pred EEEeeccC-----CCHHHHHHHHhcCcccceecccccCCccch
Q 002459 257 GLDVSRTD-----VGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (919)
Q Consensus 257 ~L~l~~~~-----i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 294 (919)
+|+++.+. +....+ -+++ .|++.+|-.++.+
T Consensus 181 ~L~ls~n~~~sLeI~~~sL------P~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 181 SITLHIEQKTTWNISFEGF------PDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred EEEecccccccccCccccc------cccc-EechhhhcccCHH
Confidence 99997752 222222 2456 7888888665544
No 179
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.019 Score=60.84 Aligned_cols=299 Identities=20% Similarity=0.105 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHHHHhhcChH-HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC------cccHHHHHHhcCHH
Q 002459 441 REGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG------EEHKGAIADAGGVK 513 (919)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~------~~~~~~i~~~g~i~ 513 (919)
...+|..|..+|.-|+..-. .+..+++. ...+..-+...++.+++++...+..+... |+.-+.-...|..-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 34567777777777764221 12122111 11222223446899999999999888762 22111111111111
Q ss_pred ------HHHHHHhccCCCCHHHHHHHHHHHHHhhcC-----CcchHHHHhcChHHHHHHHHhcC---CchHHHHHHHHHH
Q 002459 514 ------ALVDLIFKWSSGGDGVLERAAGALANLAAD-----DKCSMEVALAGGVHALVMLARSC---KFEGVQEQAARAL 579 (919)
Q Consensus 514 ------~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-----~~~~~~l~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L 579 (919)
+.-.... .+..+..+..++.++.++... ++.++ .....++..+ .+.-++..|.+++
T Consensus 346 ~~~l~~p~~~~~Y--Ds~~~Tl~~s~Cdals~i~~~~f~~lpn~~~--------T~~~~Fl~GC~d~~~~lv~~aA~Ra~ 415 (728)
T KOG4535|consen 346 TMMLNGPLPRALY--DSEHPTLQASACDALSSILPEAFSNLPNDRQ--------TLCITFLLGCNDSKNRLVKAAASRAL 415 (728)
T ss_pred HHHccCCChhhhh--hhcCCCchhHHHHHHhhcCchhhcCCCCcch--------hhhHHHHhcccchHHHHHHHHHHhhc
Confidence 1112222 234455666777777777642 12111 1122222222 2233455677777
Q ss_pred HHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC----ccc----HHHHHHcCCHHHHHHHHh
Q 002459 580 ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD----DRN----REAIAAAGGVEALVVLAQ 651 (919)
Q Consensus 580 ~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~----~~~----~~~l~~~g~i~~Lv~ll~ 651 (919)
.-..-++.. .....--..+.......+.+..-..|+.+++++.|++.. .++ ...+.. --+..+++...
T Consensus 416 ~VyVLHp~l---r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~ 491 (728)
T KOG4535|consen 416 GVYVLHPCL---RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAI 491 (728)
T ss_pred eeEEeccch---hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHH
Confidence 666655311 111112234445555566666778899999999998652 111 111111 12344444444
Q ss_pred hcCCCCHHHHHHHHHHHHHcccC----cchhhHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHHcCCccc--HHHHHH
Q 002459 652 SCSNASPGLQERAAGALWGLSVS----EANCIAIGREGGVAPLIALA-RSEAEDVHETAAGALWNLAFNPGN--ALRIVE 724 (919)
Q Consensus 652 ~~~~~~~~~~~~A~~~L~~l~~~----~~~~~~l~~~g~v~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~--~~~l~~ 724 (919)
.+.....+++.+|..+|+|+... .+........|.+..+..-. -.+...|+=+|+.++.||..++.- +..=..
T Consensus 492 ~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA 571 (728)
T KOG4535|consen 492 EASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA 571 (728)
T ss_pred HhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch
Confidence 33446778999999999999853 12222223333333333322 234578999999999999987653 222223
Q ss_pred cCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 725 EGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 725 ~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
....+.|..++.+..+-.+|..|+.+|..-.
T Consensus 572 ~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 572 SQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 4568899999988877889999999996443
No 180
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.27 E-value=0.55 Score=51.11 Aligned_cols=277 Identities=18% Similarity=0.113 Sum_probs=152.2
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc-CCH-HHHHHHHHHHHhhccCcccHHH
Q 002459 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNR-LVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 429 ~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
-++.+++-+++ ....+|+.++--|..-..+++.+..+...|.++.+++.+.+ ++. ...-.++.+++-++.+..+...
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 35667777764 45678888888888888899999999999999999999954 333 4444555566666666656666
Q ss_pred HHHhcCHHHHHHHHh--ccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhc--------CCchHHHHHH
Q 002459 506 IADAGGVKALVDLIF--KWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS--------CKFEGVQEQA 575 (919)
Q Consensus 506 i~~~g~i~~L~~lL~--~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~--------~~~~~~~~~a 575 (919)
+.+.+....++.++. ............ -=.+++ .. ....+..+...... ......+..+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~---~~~~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSS---RKKNLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhh---hhhhhh-------HH-HHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 556666666677775 100000000000 000000 00 01111111122210 0112223345
Q ss_pred HHHHHHHhc-----------CCCCCCcccchhhccchHHHHHHHhC----CC-------C-----HHHHHHHHHHHHhhc
Q 002459 576 ARALANLAA-----------HGDSNSNNSAVGQEAGALEALVQLTR----SP-------H-----EGVRQEAAGALWNLS 628 (919)
Q Consensus 576 ~~~L~~L~~-----------~~~~~~~~~~~~~~~~~i~~Lv~lL~----~~-------~-----~~~~~~a~~~L~~Ls 628 (919)
..+|..++. .....+..++.+...|+++.++..+. .. + ......+.++|-+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 555555520 00111234566778889999998875 11 1 123445778888877
Q ss_pred CC-cccHHHHHHcC--C-HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHH-------c-
Q 002459 629 FD-DRNREAIAAAG--G-VEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALA-------R- 695 (919)
Q Consensus 629 ~~-~~~~~~l~~~g--~-i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL-------~- 695 (919)
.. .+++..+.... . +..+..++..+..........+++.+.|++-+ +..+..+...+....+..+. .
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~ 330 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSL 330 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccc
Confidence 65 56677666642 2 23333333331123345567899999999975 56666666553333221111 1
Q ss_pred ------cCCHHHHHHHHHHHHHHcCCc
Q 002459 696 ------SEAEDVHETAAGALWNLAFNP 716 (919)
Q Consensus 696 ------~~~~~v~~~a~~aL~~l~~~~ 716 (919)
...-+...-++++|.||+.+.
T Consensus 331 ~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 331 PNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccccchHHHHHHHhHHHheeeC
Confidence 012467778899999998743
No 181
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.16 E-value=2.6 Score=47.17 Aligned_cols=344 Identities=18% Similarity=0.115 Sum_probs=187.0
Q ss_pred HHHHHhhccCCH---HHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 002459 382 GLLLSLMQSTQE---DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (919)
Q Consensus 382 ~~Lv~lL~~~~~---~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 457 (919)
|.++..|.+.++ ...+....+|..++.... ..+.+.- ..+..+-...++ .+.+.....+.+|..+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~--------i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~ 72 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ--------ILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLE 72 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh--------HHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567777855443 556778888888775422 1222211 333333333332 255666677777777654
Q ss_pred -ChH-----HHHHHHHhCcHHHHHHHHhc-----C--CHHHHHHHHHHHHhhccC--cccHHHHHHhcCHHHHHHHHhc-
Q 002459 458 -NAK-----VAKAVAEEGGINILAVLARS-----M--NRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFK- 521 (919)
Q Consensus 458 -~~~-----~~~~i~~~g~i~~Lv~lL~~-----~--~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~- 521 (919)
..+ .-....+...++.+.++.-. . ++.+...+..++..+... ++.+..+.+ .+..+...
T Consensus 73 ~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~ 147 (415)
T PF12460_consen 73 KKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSP 147 (415)
T ss_pred hcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccc
Confidence 211 12222333357777766532 1 255666666666655553 344444432 23333220
Q ss_pred -----c---CC----CCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCC
Q 002459 522 -----W---SS----GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (919)
Q Consensus 522 -----~---~~----~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 589 (919)
. .. .......-...++..+-.+-... . ....+..++.+..+.+++..+..++..++.+...-...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~--~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~ 224 (415)
T PF12460_consen 148 KSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-D--LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD 224 (415)
T ss_pred cccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-C--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh
Confidence 0 00 11112222233344333322211 1 11367888888877776888888999888888531110
Q ss_pred CcccchhhccchHHHHHHHh-CCCCHHHHHHHHHHHHhhc----C-CcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHH
Q 002459 590 SNNSAVGQEAGALEALVQLT-RSPHEGVRQEAAGALWNLS----F-DDRNREAIAAAGGVEALVVLAQSCSNASPGLQER 663 (919)
Q Consensus 590 ~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls----~-~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~ 663 (919)
+ .-.+.++.+...+ ...+...+..+..++..++ . +.+.... .+..|+.++. ++++...
T Consensus 225 ~------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~-----~~~~L~~lL~-----~~~~g~~ 288 (415)
T PF12460_consen 225 D------DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATE-----LLDKLLELLS-----SPELGQQ 288 (415)
T ss_pred h------hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHH-----HHHHHHHHhC-----ChhhHHH
Confidence 0 1123444444444 2333444444444443332 2 1111111 2456666664 4677888
Q ss_pred HHHHHHHcccC-cch--------hhHHHhc----CChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHH-cCCHH
Q 002459 664 AAGALWGLSVS-EAN--------CIAIGRE----GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE-EGGVP 729 (919)
Q Consensus 664 A~~~L~~l~~~-~~~--------~~~l~~~----g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~-~~~i~ 729 (919)
|+..+.-+..+ ++. .+.+.+. ..+|.|++-.+..+.+.+.+.+.||.++..+-+....+-+ ...+|
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 88888877755 221 1122222 2567788888877777999999999999886553333333 34689
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 730 ALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 730 ~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
.|++-|..++ +.++..+..+|..+..+.+
T Consensus 369 LLlqsL~~~~-~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 369 LLLQSLSLPD-ADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHHHcCH
Confidence 9999998775 7899999999988776654
No 182
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.16 E-value=0.24 Score=49.55 Aligned_cols=223 Identities=15% Similarity=0.069 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHhhccC-cccHHHHH-HhcCHHHHHH-HHhccCCC-----CH---HHHHHHHHHHHHhhcCCcchHHH
Q 002459 482 NRLVAEEAAGGLWNLSVG-EEHKGAIA-DAGGVKALVD-LIFKWSSG-----GD---GVLERAAGALANLAADDKCSMEV 550 (919)
Q Consensus 482 ~~~~~~~a~~~L~~Ls~~-~~~~~~i~-~~g~i~~L~~-lL~~~~~~-----~~---~~~~~a~~~L~~L~~~~~~~~~l 550 (919)
+++.|+.|+.-|..--.. ++....+- ..|.+..|++ ++.-++.- +. .-.-+|+..|-.++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 667777775555444332 22222232 3455666653 33322111 11 23345677777888999999999
Q ss_pred HhcChHHHHHHHHhcCC----chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002459 551 ALAGGVHALVMLARSCK----FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (919)
Q Consensus 551 ~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 626 (919)
.++...-.|..++...+ .+.++-..+++++.|...+ ..+.-..+...+.+|..+..++.+++-.+..|..++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d--~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTD--DPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCC--cHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99998877888886443 2556678999999999754 34455667789999999999999999899999999998
Q ss_pred hcCCcccHHHHHHc--------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc--
Q 002459 627 LSFDDRNREAIAAA--------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS-- 696 (919)
Q Consensus 627 Ls~~~~~~~~l~~~--------g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~-- 696 (919)
+-.++.+-.++.+. .++..++.-+.. .+++.+-....++-..|+.++..+..+.+. +| ..|++
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~--~pS~RLLKhIIrCYlRLsdnprar~aL~~~--LP---~~Lrd~~ 238 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK--QPSPRLLKHIIRCYLRLSDNPRAREALRQC--LP---DQLRDGT 238 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH--S--HHHHHHHHHHHHHHTTSTTHHHHHHHH--S----GGGTSST
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHccCHHHHHHHHHh--Cc---HHHhcHH
Confidence 87776654444331 234455554443 378999999999999999999888877642 22 22222
Q ss_pred ------CCHHHHHHHHHHHHHHc
Q 002459 697 ------EAEDVHETAAGALWNLA 713 (919)
Q Consensus 697 ------~~~~v~~~a~~aL~~l~ 713 (919)
+|+.++..-.+.+.|+.
T Consensus 239 f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 239 FSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp TTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhc
Confidence 36778888777777753
No 183
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.15 E-value=0.0061 Score=37.43 Aligned_cols=24 Identities=46% Similarity=0.893 Sum_probs=12.7
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHH
Q 002459 178 CPKLKKLRLSGIRDICGDAINALA 201 (919)
Q Consensus 178 ~~~L~~L~L~~~~~~~~~~l~~l~ 201 (919)
||+|++|+|++|+.++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555555555555555443
No 184
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.14 E-value=0.0023 Score=71.55 Aligned_cols=188 Identities=22% Similarity=0.221 Sum_probs=117.8
Q ss_pred ccEEEecCCccchHHHHH------cCCCccEEEecCCCCCCHHHHHHHHhcCC----CCCEEeeCCCCCCCCCHHHHHHH
Q 002459 105 LQKLRFRGAESADSIIHL------QARNLRELSGDYCRKITDATLSVIVARHE----ALESLQLGPDFCERITSDAVKAI 174 (919)
Q Consensus 105 L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~~i~~~~l~~l 174 (919)
+..+.|.+|...+..... ..+.|..|+++++. +++.+...+....+ .|+.|++. +| .+++.+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~--~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELV--SC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhh--cc-cccccchHHH
Confidence 555666666554332111 46778888888876 66777666655443 45666664 35 4555554443
Q ss_pred Hh---cCCCCCEEEecCCCCCCHHHHHHHHhh-------CCCCcEEEecCCCCCCHHH-------HhCCCC-CCEEeecC
Q 002459 175 AL---CCPKLKKLRLSGIRDICGDAINALAKL-------CPNLTDIGFLDCLNVDEVA-------LGNVLS-VRFLSVAG 236 (919)
Q Consensus 175 ~~---~~~~L~~L~L~~~~~~~~~~l~~l~~~-------~~~L~~L~l~~~~~l~~~~-------l~~~~~-L~~L~l~~ 236 (919)
+. .++.|+.++++.+. +...+...+.+. ..++++|++++| .+++.. +...++ +..|++..
T Consensus 165 ~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 32 25677778888773 434444333322 246888888888 555532 234454 67788875
Q ss_pred CCCCCHHHHHHHHhcCC----CCCEEEeeccCCCHHHHHHH---HhcCcccceecccccCCccchhHHHHH
Q 002459 237 TSNMKWGVVSQVWHKLP----KLVGLDVSRTDVGPITISRL---LTSSKSLKVLCALNCPVLEEENNISAV 300 (919)
Q Consensus 237 c~~i~~~~l~~l~~~~~----~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~l~~~~~~~~~ 300 (919)
+ .+.|.++..+...++ .+++++++.|.+++.+...+ ...|+.++.+.+++.+ +++.++....
T Consensus 243 n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~ 311 (478)
T KOG4308|consen 243 N-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLL 311 (478)
T ss_pred c-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHH
Confidence 4 677777777765554 45889999988776665554 4478888999998877 7777755554
No 185
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.14 E-value=0.12 Score=47.66 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=96.5
Q ss_pred HHHHHhcCHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC-chHHHHHHHHHH
Q 002459 504 GAIADAGGVKALVDLIFKWSS---GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEGVQEQAARAL 579 (919)
Q Consensus 504 ~~i~~~g~i~~L~~lL~~~~~---~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L 579 (919)
..++..||+..|++++++... ...+....++.++..|-..........+...+...+.+..... +..+...++..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 457788999999999986221 1247778888999988877666677777788899999888654 578889999999
Q ss_pred HHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC
Q 002459 580 ANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 580 ~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (919)
.++... .+.....+.++=-++.|+..|+..+++++.+|...+..|-..
T Consensus 85 Es~Vl~---S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLN---SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhC---CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999985 333344555666788999999999999999999888876444
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.09 E-value=0.47 Score=56.75 Aligned_cols=293 Identities=12% Similarity=0.009 Sum_probs=165.0
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc---
Q 002459 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--- 457 (919)
Q Consensus 382 ~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--- 457 (919)
+.+...+++ ...+.+..|...|..|+...+.. ..-...+|.++.++.++..+||..|+.+|..+-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 444444432 55677889999999988654432 2334689999999999999999999999988532
Q ss_pred --ChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 458 --NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 458 --~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
.+.....+.+. .+|.|-.++.+ ....+|..-+..|..|+.. ...+.+.+--.....++.. .+.+.
T Consensus 495 ~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~---~nset----- 562 (1431)
T KOG1240|consen 495 DIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLND---PNSET----- 562 (1431)
T ss_pred CCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccC---ccccc-----
Confidence 22333334333 57777777776 4455666666667766652 0111111000001111111 11110
Q ss_pred HHHHHhhcCCcchHHHHhcChHHH-HHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCC
Q 002459 535 GALANLAADDKCSMEVALAGGVHA-LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (919)
Q Consensus 535 ~~L~~L~~~~~~~~~l~~~g~i~~-L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 613 (919)
..... .+....++ ...+.. .+.++.+++ +-|+..-+..|.-||..- . +.-...-.+..|+.+|...|
T Consensus 563 --~~~~~-~~~~~~~L--~~~V~~~v~sLlsd~~-~~Vkr~Lle~i~~LC~FF---G---k~ksND~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 563 --APEQN-YNTELQAL--HHTVEQMVSSLLSDSP-PIVKRALLESIIPLCVFF---G---KEKSNDVILSHLITFLNDKD 630 (1431)
T ss_pred --ccccc-cchHHHHH--HHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHh---h---hcccccchHHHHHHHhcCcc
Confidence 00000 00001111 112333 334555443 677777777777777531 1 01113345778888888888
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHH
Q 002459 614 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL 693 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~l 693 (919)
..+|.+-..-+..++..-.-| -+++..+|.|.+-|.+ +.+.+...|+++|.-|+...-.++..+- ..++...-+
T Consensus 631 w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD---~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~Pl 704 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD---GEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPL 704 (1431)
T ss_pred HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC---cchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhh
Confidence 888876666565555442221 1233456777777776 7888888898888887765433221111 123334445
Q ss_pred HccCCHHHHHHHHHHHHHHcC
Q 002459 694 ARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 694 L~~~~~~v~~~a~~aL~~l~~ 714 (919)
|-.++.=||..++..+...+.
T Consensus 705 L~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 705 LCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeCchHHHHHHHHHHHHHHHh
Confidence 556777788888888877664
No 187
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.09 E-value=0.49 Score=50.22 Aligned_cols=168 Identities=18% Similarity=0.153 Sum_probs=109.8
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHH
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKV 461 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~ 461 (919)
++..++++++.+|+.|.++|+-++.-+.+. ....++.+...++.+++.++..|++++..+.. ..+.
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~Lld~~~------------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCLLDKEL------------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhChHH------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 335668899999999999999988765532 12346678888877899999999999999754 2222
Q ss_pred HHHH-------HHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCC-CHHHHHHH
Q 002459 462 AKAV-------AEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSG-GDGVLERA 533 (919)
Q Consensus 462 ~~~i-------~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~~a 533 (919)
-... .....++.+.+.+.+.+++++..|+..+..|--...... ....+..|+-+-.++... +..++..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 123346778888888999999999999999877532221 123344555554443322 34555544
Q ss_pred HHHHHHhhcCCcchHHHHhcChHHHHHHHHhcC
Q 002459 534 AGALANLAADDKCSMEVALAGGVHALVMLARSC 566 (919)
Q Consensus 534 ~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~ 566 (919)
...+-..+......+.......++.+-.+....
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555555555445666667777777766643
No 188
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.03 E-value=0.02 Score=48.53 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccc-CcchhhHHHhcCChHHHHHHH--ccCCHHHHHHHHHHHHHHcC-CcccHHHHHH
Q 002459 661 QERAAGALWGLSV-SEANCIAIGREGGVAPLIALA--RSEAEDVHETAAGALWNLAF-NPGNALRIVE 724 (919)
Q Consensus 661 ~~~A~~~L~~l~~-~~~~~~~l~~~g~v~~L~~lL--~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~ 724 (919)
+...+.+|+|++. ++.++..+.+.||++.+++.. .+.+|.++++|+.++.||+. +++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567788999985 488899999999999999986 44679999999999999998 7888877765
No 189
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=4.3 Score=46.76 Aligned_cols=202 Identities=20% Similarity=0.170 Sum_probs=103.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc----CCHHHHHHHHHHHHH-h
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----WREGLQSEAAKAIAN-L 455 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~----~~~~~~~~a~~~L~~-l 455 (919)
...|.+-+...++.++..|.++|+.+. +.|.+..+-+.++. .++.+...|+-.=.. +
T Consensus 102 tsslmkD~t~~~d~yr~~AiR~L~~I~------------------d~~m~~~iery~kqaivd~~~avSsaalvss~hll 163 (865)
T KOG1078|consen 102 TSSLMKDMTGKEDLYRAAAIRALCSII------------------DGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLL 163 (865)
T ss_pred hHHHHhhccCCCcchhHHHHHHHHhhc------------------CcchhHHHHHHHHhHeeccccccchHHHHHHhhhh
Confidence 355666666677788888888888744 33444444444443 333333222221111 2
Q ss_pred hcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHH
Q 002459 456 SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (919)
Q Consensus 456 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (919)
..+.+.-+.-. ........+.+.-+|..|.+.|+.+-.++ .-++..++..+......++--...-.+
T Consensus 164 ~~~~~~vkrw~-----neiqea~~s~~~m~QyHalglLyqirk~d--------rla~sklv~~~~~~~~~~~~A~~~lir 230 (865)
T KOG1078|consen 164 PISFDVVKRWA-----NEVQEAVNSDNIMVQYHALGLLYQIRKND--------RLAVSKLVQKFTRGSLKSPLAVCMLIR 230 (865)
T ss_pred cccHHHHHHHH-----HhhhhccCcHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHccccccchhHHHHHHH
Confidence 22222111111 11111222344567889999999886542 113344444443211222211111111
Q ss_pred HHHHhhcCCcchHHHHhcChHHHHHH----HHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC
Q 002459 536 ALANLAADDKCSMEVALAGGVHALVM----LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (919)
Q Consensus 536 ~L~~L~~~~~~~~~l~~~g~i~~L~~----ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~ 611 (919)
+-..+...+ ..+..+++. .+++.. +-+...+++++.++... ..+.. ..++..|--++.+
T Consensus 231 ~~~~~l~~~--------~~~~s~~~~fl~s~l~~K~-emV~~EaArai~~l~~~-----~~r~l---~pavs~Lq~flss 293 (865)
T KOG1078|consen 231 IASELLKEN--------QQADSPLFPFLESCLRHKS-EMVIYEAARAIVSLPNT-----NSREL---APAVSVLQLFLSS 293 (865)
T ss_pred HHHHHhhhc--------ccchhhHHHHHHHHHhchh-HHHHHHHHHHHhhcccc-----CHhhc---chHHHHHHHHhcC
Confidence 111111111 223333444 444444 77888899999888753 11222 2377777778888
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 002459 612 PHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~ 630 (919)
....+|-.|.++|..++..
T Consensus 294 p~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 294 PKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 8889999999999998775
No 190
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.94 E-value=0.29 Score=57.41 Aligned_cols=338 Identities=15% Similarity=0.051 Sum_probs=209.9
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-- 457 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-- 457 (919)
+.+.+++...+....++...+.....|...-+. .......+++...+++....+.+..++.-...++.
T Consensus 317 ~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~----------~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 317 LTESLVQAVEDGSWRVSYMVADKFSELSSAVGP----------SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc----------ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 346777777777777777666666655432111 11223446677777777777777777777776654
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCH----HHHHHHHhccCCCCHHHHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV----KALVDLIFKWSSGGDGVLERA 533 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i----~~L~~lL~~~~~~~~~~~~~a 533 (919)
+.+....+.....++.+-.+..+.+..++...+....+++---. ....+ +.++..+ .+..+.++...
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~------k~~ti~~llp~~~~~l---~de~~~V~lnl 457 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP------KERTISELLPLLIGNL---KDEDPIVRLNL 457 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC------cCcCccccChhhhhhc---chhhHHHHHhh
Confidence 55556666666667888888888888888877776666654211 22233 3344444 34667777777
Q ss_pred HHHHHHhhcCCc-chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC
Q 002459 534 AGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (919)
Q Consensus 534 ~~~L~~L~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 612 (919)
...+..+-...+ .......+..++.+..+..... ..++.+..+.+..++..- . ..+.+....+.+...+.+.
T Consensus 458 i~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~-wRvr~ail~~ip~la~q~-----~-~~~~~~~~~~l~~~~l~d~ 530 (759)
T KOG0211|consen 458 IDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL-WRVRLAILEYIPQLALQL-----G-VEFFDEKLAELLRTWLPDH 530 (759)
T ss_pred HHHHHHHHhccCcccchhhhhhhhhhhhhhccchh-HHHHHHHHHHHHHHHHhh-----h-hHHhhHHHHHHHHhhhhhh
Confidence 666655544333 2344455566777777766553 667777888888777531 1 2333444455555556666
Q ss_pred CHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHH
Q 002459 613 HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIA 692 (919)
Q Consensus 613 ~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~ 692 (919)
...++++|+..+..++..-..... ....++.++..... ++...|...+.++..++.- ..+.+.....++.+..
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q---~~y~~R~t~l~si~~la~v--~g~ei~~~~Llp~~~~ 603 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQ---DNYLVRMTTLFSIHELAEV--LGQEITCEDLLPVFLD 603 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcC---cccchhhHHHHHHHHHHHH--hccHHHHHHHhHHHHH
Confidence 778999999888887654221111 11234555555543 4566666666666544421 2224555667888999
Q ss_pred HHccCCHHHHHHHHHHHHHHcC--CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 693 LARSEAEDVHETAAGALWNLAF--NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 693 lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
+..++.+.||.+++..|..+.. ... ..+....|.+..+.. +++..+|..|..+.+.+.
T Consensus 604 l~~D~vanVR~nvak~L~~i~~~L~~~----~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 604 LVKDPVANVRINVAKHLPKILKLLDES----VRDEEVLPLLETLSS-DQELDVRYRAILAFGSIE 663 (759)
T ss_pred hccCCchhhhhhHHHHHHHHHhhcchH----HHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHH
Confidence 9999999999999999999864 222 233333444444444 556789999988887554
No 191
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.90 E-value=0.28 Score=47.48 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCc-
Q 002459 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG- 470 (919)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~- 470 (919)
++.++.++..+++.|+..-+. ++ ...++.+...|+++++.+|..|+.+|..|...+-.+.. |-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----------~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l 64 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----------LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQL 64 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----------HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhh
Confidence 578899999999998864332 22 25678899999999999999999999998865422211 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 499 (919)
+..++.++.+++++++..|...+..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 37888888999999999999999999986
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.87 E-value=1.1 Score=53.19 Aligned_cols=248 Identities=14% Similarity=0.067 Sum_probs=144.6
Q ss_pred HHHHcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHh----cCC----HHHHHHH
Q 002459 423 AVMKDGGIRLLLDLAKS-----WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR----SMN----RLVAEEA 489 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a 489 (919)
.+.+.|+++.+++++.+ .....-...+..|..++.-+.+|+.+.+.|+++.|++.+. .+. ..+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45678999999999986 2345666778888888889999999999999999998875 233 5677777
Q ss_pred HHHHHhhccCcccHH-----HHHHhc-----C---HHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCcch-HHHHhcC
Q 002459 490 AGGLWNLSVGEEHKG-----AIADAG-----G---VKALVDLIFKW-SSGGDGVLERAAGALANLAADDKCS-MEVALAG 554 (919)
Q Consensus 490 ~~~L~~Ls~~~~~~~-----~i~~~g-----~---i~~L~~lL~~~-~~~~~~~~~~a~~~L~~L~~~~~~~-~~l~~~g 554 (919)
+.++..+........ ...... . +..|++.+.+. ...++.+....+++|-+|+..++.. +.+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 766666655321110 001111 2 55666666532 2346788999999999999876543 333321
Q ss_pred hHHHHHHHHh--cCCchHHHHHHHHHHHHHhcCCCCC---CcccchhhccchHHHHHHHhCCC--------CHHH-----
Q 002459 555 GVHALVMLAR--SCKFEGVQEQAARALANLAAHGDSN---SNNSAVGQEAGALEALVQLTRSP--------HEGV----- 616 (919)
Q Consensus 555 ~i~~L~~ll~--~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~~~~~~~i~~Lv~lL~~~--------~~~~----- 616 (919)
+.+.+.+=. ....++- ...+.++..++..-..+ ...+..+.+.|+++..+++|... +++.
T Consensus 271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 111112111 1111111 22355555555432212 24566778899999888877542 2222
Q ss_pred ---HHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCc
Q 002459 617 ---RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSE 675 (919)
Q Consensus 617 ---~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~ 675 (919)
...++..|.-|+......+.++..++++.+-.+=+. +++..+-..|=.+|-.+..++
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqv--ss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQV--SSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcC--CCccchHHHHHHHHHHHhcCh
Confidence 233677777787775544444556666444444332 223444444444554444433
No 193
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.83 E-value=0.21 Score=58.00 Aligned_cols=169 Identities=16% Similarity=0.028 Sum_probs=119.2
Q ss_pred HhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCC
Q 002459 563 ARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGG 642 (919)
Q Consensus 563 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~ 642 (919)
+.+.++......+-.+++.++.+.+- ....+.+++...+.|.+++.-.---|.+.+...+....+ +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm----------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM----------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----H
Confidence 44554344445566777788765321 234566666666788888888877777777765543333 4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHH
Q 002459 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRI 722 (919)
Q Consensus 643 i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l 722 (919)
+..+.+-+++ +++.+|..|.++++.+-..+-. ...++++.+++.++++.||..|+-++..+-. -.....
T Consensus 94 vNti~kDl~d---~N~~iR~~AlR~ls~l~~~el~------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~ 162 (757)
T COG5096 94 VNTIQKDLQD---PNEEIRGFALRTLSLLRVKELL------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLY 162 (757)
T ss_pred HHHHHhhccC---CCHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhh
Confidence 6777777876 9999999999999887643211 1267889999999999999999999999863 122234
Q ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCC
Q 002459 723 VEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (919)
Q Consensus 723 ~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 757 (919)
.+.|.+..+..++.+.+ |.+...|..+|..+-..
T Consensus 163 ~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 163 HELGLIDILKELVADSD-PIVIANALASLAEIDPE 196 (757)
T ss_pred hcccHHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence 45667777777777664 88888998888877655
No 194
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.76 E-value=0.0045 Score=62.44 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=51.3
Q ss_pred ccCcCCCC----HHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCccccccCCCCCCHHHHHHHHHh
Q 002459 37 VVDWTSLP----DDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASR 101 (919)
Q Consensus 37 ~~~~~~LP----~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw~~l~l~~~~~~~~~l~~l~~~ 101 (919)
.+-++.|| +++...||+||+..+++.+-.|||+|+++..+|-+|+.+--.... .++.+..+..+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr-~dslWrgl~e~ 139 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVR-TDSLWRGLSER 139 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcc-hHHHHhhhhhc
Confidence 35688999 999999999999999999999999999999999999876443322 33555555554
No 195
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=0.5 Score=54.32 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=177.9
Q ss_pred ChhHHHHhhcHHHHHHhh----ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHH
Q 002459 371 GLDDFWLKQGAGLLLSLM----QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS 446 (919)
Q Consensus 371 ~~~~~~~~~gi~~Lv~lL----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~ 446 (919)
.++.| .+.|+..++-++ +.++.-....+.+.|+.|+... .....+++.|+|..|+..=+-+ ..-.
T Consensus 342 ~lpv~-~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~--------kfa~~fv~~~gi~kll~vpr~s--~~~~ 410 (1516)
T KOG1832|consen 342 VLPVL-HEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHR--------KFAAMFVERRGILKLLAVPRVS--ETFY 410 (1516)
T ss_pred HHHHH-HHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhh--------HHHHHHHHhhhhHHHhcCCCch--hhhh
Confidence 44443 344543333333 3445445566777777766542 2456778889988777653321 1222
Q ss_pred HHHHHHHHhhcChHHHHHHHH------hCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHh
Q 002459 447 EAAKAIANLSVNAKVAKAVAE------EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 447 ~a~~~L~~l~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~ 520 (919)
.-..+|+.++.....-+.+.. ...+..-+.++......-+..++......-.....-+.+-...++..|+.++.
T Consensus 411 g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 411 GLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILK 490 (1516)
T ss_pred hHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333455555554443333332 22344444555544333333333222222111222233444556666766664
Q ss_pred cc-----CCCCH-----------HHHHHHHHHHHHhh-----c-CCcchHHHHhcChHHHHHHHHhcCCch-----HHHH
Q 002459 521 KW-----SSGGD-----------GVLERAAGALANLA-----A-DDKCSMEVALAGGVHALVMLARSCKFE-----GVQE 573 (919)
Q Consensus 521 ~~-----~~~~~-----------~~~~~a~~~L~~L~-----~-~~~~~~~l~~~g~i~~L~~ll~~~~~~-----~~~~ 573 (919)
.. ...+. ....+.+.+|..-- . .+..++.-...|.....+.-+..+..| +..+
T Consensus 491 ~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e 570 (1516)
T KOG1832|consen 491 DAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVE 570 (1516)
T ss_pred HHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHH
Confidence 31 00110 11122333332211 1 122233333344444444433322111 1112
Q ss_pred HHHHHHHHHhcCC----CCCCcccchhhccchHHHHHHHhCCC--------CHHHHHHHHHHHHhhcCCcccHHHHHHc-
Q 002459 574 QAARALANLAAHG----DSNSNNSAVGQEAGALEALVQLTRSP--------HEGVRQEAAGALWNLSFDDRNREAIAAA- 640 (919)
Q Consensus 574 ~a~~~L~~L~~~~----~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~~~~~~~a~~~L~~Ls~~~~~~~~l~~~- 640 (919)
..++-+..+...+ ...+.-.+.+.+.+++..++++.... -.+....|+.+|.-+..-++.+..++.+
T Consensus 571 ~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~ 650 (1516)
T KOG1832|consen 571 AIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHAT 650 (1516)
T ss_pred HHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHH
Confidence 2222222221111 11344455667778888888887542 2456777888888887778887777653
Q ss_pred -------CCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcccCc-chhh--------------------------------
Q 002459 641 -------GGVEALVVLAQSCSN-ASPGLQERAAGALWGLSVSE-ANCI-------------------------------- 679 (919)
Q Consensus 641 -------g~i~~Lv~ll~~~~~-~~~~~~~~A~~~L~~l~~~~-~~~~-------------------------------- 679 (919)
.|+..++........ .+++++..|+.+|.|+...+ +++.
T Consensus 651 ~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~ 730 (1516)
T KOG1832|consen 651 LSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ 730 (1516)
T ss_pred hhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHH
Confidence 245555444332112 48999999999999997432 2221
Q ss_pred ---HHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHHcCCcccHHHHHH
Q 002459 680 ---AIGREGGVAPLIALARSEA-----EDVHETAAGALWNLAFNPGNALRIVE 724 (919)
Q Consensus 680 ---~l~~~g~v~~L~~lL~~~~-----~~v~~~a~~aL~~l~~~~~~~~~l~~ 724 (919)
.+...+||..|+++|+-.. ..++.-|+.+|..|+.++..++.+.+
T Consensus 731 mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 731 MWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred HHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 2223468999999997543 45899999999999999988876654
No 196
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.72 E-value=0.12 Score=59.09 Aligned_cols=204 Identities=17% Similarity=0.119 Sum_probs=135.6
Q ss_pred ccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHH-HhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHH
Q 002459 497 SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA-NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (919)
Q Consensus 497 s~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a 575 (919)
+....-+...++.|+...|+++... ..+..+..+..+|. .+....+- ....++++...+......--...+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~---q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQ---QFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHH---hchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 3345667777889999999999875 45555666666665 22211110 012345555555433211122478
Q ss_pred HHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-HHHHHH-cCCHHHHHHHHhhc
Q 002459 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAA-AGGVEALVVLAQSC 653 (919)
Q Consensus 576 ~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~-~g~i~~Lv~ll~~~ 653 (919)
+.++.||++.. +..+..+....+++.+-.++..+++..+..++..+.||...+.. ...+++ ....+.....+..
T Consensus 563 L~altnLas~s---~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~- 638 (748)
T KOG4151|consen 563 LEALTNLASIS---ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV- 638 (748)
T ss_pred HHHhhcccCcc---hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-
Confidence 89999999873 33444566666677666677778899999999999999888665 445555 3455555555554
Q ss_pred CCCCHHHHHHHHHHHHHcccC-cchhh-HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 654 SNASPGLQERAAGALWGLSVS-EANCI-AIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 654 ~~~~~~~~~~A~~~L~~l~~~-~~~~~-~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
..+....++++++.-+... +.++. ...-..+...++.++.++++++++..+....|+..
T Consensus 639 --~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 639 --ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred --hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 6777788888888866654 34444 33344678889999999999999999998888653
No 197
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.0024 Score=63.10 Aligned_cols=82 Identities=24% Similarity=0.283 Sum_probs=41.6
Q ss_pred CccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCC
Q 002459 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (919)
Q Consensus 126 ~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 205 (919)
+.++|++++|. ++|-. +...+|.|+.|.|+ .+.|+. +..+ ..|.+|+.|.|..+ .+.+-.-..-.++.|
T Consensus 20 ~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLS---vNkIss--L~pl-~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLS---VNKISS--LAPL-QRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCC-ccHHH---HHHhcccceeEEee---cccccc--chhH-HHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 55566666665 55533 34556667777664 233332 2222 34666666666654 333222222234556
Q ss_pred CCcEEEecCCCCC
Q 002459 206 NLTDIGFLDCLNV 218 (919)
Q Consensus 206 ~L~~L~l~~~~~l 218 (919)
+|+.|.|..|+..
T Consensus 89 sLr~LWL~ENPCc 101 (388)
T KOG2123|consen 89 SLRTLWLDENPCC 101 (388)
T ss_pred hhhhHhhccCCcc
Confidence 6666666665433
No 198
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.9 Score=51.66 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=161.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHH
Q 002459 435 DLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKA 514 (919)
Q Consensus 435 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~ 514 (919)
+-|+++++-+|-..++.|..|-. ++.- ..-+|.+.+.|.+.+.-||+.|.-++..+-... +.+. ..+-+.
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE-~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pDapeL 175 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE-PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PDAPEL 175 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc-HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CChHHH
Confidence 44677888888887777766643 2221 124677888899999999999998887776531 1111 112233
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcC--CchHHHHHHHHHHHHHhcCCCCCCcc
Q 002459 515 LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC--KFEGVQEQAARALANLAAHGDSNSNN 592 (919)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~ 592 (919)
+-.+|. ...++..+++|...|...- + +.++..|.....+- -++..+......++..+.. ++
T Consensus 176 i~~fL~--~e~DpsCkRNAFi~L~~~D--~--------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~---~p-- 238 (948)
T KOG1058|consen 176 IESFLL--TEQDPSCKRNAFLMLFTTD--P--------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA---NP-- 238 (948)
T ss_pred HHHHHH--hccCchhHHHHHHHHHhcC--H--------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---CH--
Confidence 334554 2456677777765554432 1 12233333322211 1245556666666666642 11
Q ss_pred cchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 593 SAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 593 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
..+...++.+..+|.+.++.++..|+..|.+++.++..-.. +...+++++.. .++-.++.-...-|..+.
T Consensus 239 ---~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~k--esdnnvklIvldrl~~l~ 308 (948)
T KOG1058|consen 239 ---AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVK--ESDNNVKLIVLDRLSELK 308 (948)
T ss_pred ---HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHh--ccCcchhhhhHHHHHHHh
Confidence 12456789999999999999999999999999987655322 23456666654 133344433333343333
Q ss_pred cCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHh----------cCCCHH
Q 002459 673 VSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCS----------SSGSKM 742 (919)
Q Consensus 673 ~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~----------~~~~~~ 742 (919)
. ....+. .|.+--++++|.+++-+++..++.....|+.+.+. ..++++|+ +.+...
T Consensus 309 ~---~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv----------ediv~~Lkke~~kT~~~e~d~~~~ 374 (948)
T KOG1058|consen 309 A---LHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV----------EDIVQFLKKEVMKTHNEESDDNGK 374 (948)
T ss_pred h---hhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH----------HHHHHHHHHHHHhccccccccchH
Confidence 1 111222 23445567888899999999999998888764321 22222221 122234
Q ss_pred HHHHHHHHHHHhhCCCCch
Q 002459 743 ARFMAALALAYMFDGRMDE 761 (919)
Q Consensus 743 ~~~~A~~~L~~l~~~~~~~ 761 (919)
-|+.-..++..++..-++.
T Consensus 375 yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 375 YRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHHhhcChHH
Confidence 5777777887777665543
No 199
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.2 Score=50.56 Aligned_cols=302 Identities=18% Similarity=0.154 Sum_probs=172.2
Q ss_pred HHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-CHHH---HHHHHHHHHHhhcChH
Q 002459 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGL---QSEAAKAIANLSVNAK 460 (919)
Q Consensus 385 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~---~~~a~~~L~~l~~~~~ 460 (919)
+.++...+...+..|...|+.+-.+... .+.+.+-..|-.+ .++. .--|+.+|+-+-.+.
T Consensus 347 L~WlskAtNWaKFtAtAsLGvIH~G~~~---------------~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~h- 410 (929)
T KOG2062|consen 347 LDWLSKATNWAKFTATASLGVIHRGHEN---------------QAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANH- 410 (929)
T ss_pred hhHHhhcchHhhhhhhhhcceeeccccc---------------hHHHHhhhhCCccCCCCCCccccchhhhhhccccCc-
Confidence 4556556667777788888765544331 1222333444331 1122 123555555543322
Q ss_pred HHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 002459 461 VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~ 539 (919)
-.|..+.|.+.|++ +++.++.-++-.|+-......+++. .+.+-..|++ +..+.-.|++.=.-
T Consensus 411 ------G~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~ei------Ye~lKevLy~----D~AvsGEAAgi~MG 474 (929)
T KOG2062|consen 411 ------GRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEI------YEKLKEVLYN----DSAVSGEAAGIAMG 474 (929)
T ss_pred ------CccHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHH------HHHHHHHHhc----cchhhhhHHHHhhh
Confidence 12247788888887 4677788777777666655544443 3456666753 33344444443333
Q ss_pred hh-cCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHH
Q 002459 540 LA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQ 618 (919)
Q Consensus 540 L~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~ 618 (919)
|. -...+.+ ++.-++....+...+.+++-..-.+.-.... +++++=+.+-+++.+.++-+|.
T Consensus 475 l~mlGt~~~e------aiedm~~Ya~ETQHeki~RGl~vGiaL~~yg-----------rqe~Ad~lI~el~~dkdpilR~ 537 (929)
T KOG2062|consen 475 LLMLGTANQE------AIEDMLTYAQETQHEKIIRGLAVGIALVVYG-----------RQEDADPLIKELLRDKDPILRY 537 (929)
T ss_pred hHhhCcCcHH------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhh-----------hhhhhHHHHHHHhcCCchhhhh
Confidence 33 2333322 3555666666665444444333333333221 1234444455677777888887
Q ss_pred HHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHH-ccC
Q 002459 619 EAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSE 697 (919)
Q Consensus 619 ~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL-~~~ 697 (919)
....++.- +..... ..++|..|+...-+ +.+.++|.+|..+|+-++..+.. ..+..+++| .+-
T Consensus 538 ~Gm~t~al-Ay~GTg-----nnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~ 601 (929)
T KOG2062|consen 538 GGMYTLAL-AYVGTG-----NNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESY 601 (929)
T ss_pred hhHHHHHH-HHhccC-----chhhHHHhhccccc--ccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhc
Confidence 65544431 111111 12456667666433 38889999999999998876443 356677777 456
Q ss_pred CHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCC
Q 002459 698 AEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 698 ~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
++-||..++-+|.-.|....++.. +..|-.+..+. ..-+|+.|..+++-+....
T Consensus 602 N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~-~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDP-VDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcCh-HHHHHHHHHHHHHHHHHhc
Confidence 788999999999998877766633 33444454443 3668999998888665433
No 200
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.61 E-value=0.076 Score=46.27 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=56.8
Q ss_pred HHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 381 AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 381 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
+..|+++| .+.|+.+..-|+--|+.++..- +..+..+.+-|+-+.+++++.++|++++..|+.++..+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~-------p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-------PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--------GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHC-------hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 68899999 5667888888888999988653 456777778899999999999999999999999998864
No 201
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.54 E-value=0.25 Score=45.58 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=95.6
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccC--CHHHHHHHHHH
Q 002459 634 REAIAAAGGVEALVVLAQSCSNA---SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSE--AEDVHETAAGA 708 (919)
Q Consensus 634 ~~~l~~~g~i~~Lv~ll~~~~~~---~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~--~~~v~~~a~~a 708 (919)
..+++..+|+..|++++.+.... ..+....++.++..|-......+...+...+..++.++..+ +..+...|+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 35678889999999999872110 13666778888888777665566677777888899888654 57899999999
Q ss_pred HHHHcCCccc-HHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCC
Q 002459 709 LWNLAFNPGN-ALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRM 759 (919)
Q Consensus 709 L~~l~~~~~~-~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~ 759 (919)
|.++..+++. ...+.++=.++.|+..|+.++ +.++..|...+-.+....+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCC
Confidence 9999886655 556666777999999999875 8899999888876655443
No 202
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.54 E-value=1.2 Score=47.32 Aligned_cols=191 Identities=19% Similarity=0.108 Sum_probs=112.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHh--CcHHHHHHHHhcCCHHHHHHHHHHHHhhccC---cccHH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE--GGINILAVLARSMNRLVAEEAAGGLWNLSVG---EEHKG 504 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~ 504 (919)
+...+..+.......|..++..+.++....-....+.+. .-+..+.+.++.+..+-+..|+.++.-++-. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 445566666677888999999888865422222222211 1266777778777766677777776666553 23444
Q ss_pred HHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc---CC-cchHHHHhcChHHHHHHH--Hh---------cCCch
Q 002459 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA---DD-KCSMEVALAGGVHALVML--AR---------SCKFE 569 (919)
Q Consensus 505 ~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~---~~-~~~~~l~~~g~i~~L~~l--l~---------~~~~~ 569 (919)
.+.+. ..|.|.+.+.. .+....++..++.+|+-++. .+ +...... ..+..+... .. ..+++
T Consensus 125 ei~~~-~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44443 67788888875 34455666666666665543 21 1111111 122212111 11 11235
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 002459 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (919)
Q Consensus 570 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 627 (919)
.+...|+.+..-|...- +.....-.-...++.|+.+|.+++.++|..|..+|.-|
T Consensus 201 ~l~~aAL~aW~lLlt~~---~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTL---PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67777777777666542 22111112356789999999999999999988877654
No 203
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.6 Score=52.90 Aligned_cols=112 Identities=23% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHH-HccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 002459 656 ASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (919)
Q Consensus 656 ~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~l 734 (919)
.++-+|...+.++.---... ...++|..|++. ..+.+.+|++.|+.+|.-.+...+ ...|..+.+
T Consensus 531 kdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~l 596 (929)
T KOG2062|consen 531 KDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSL 596 (929)
T ss_pred CchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHH
Confidence 56666665555443211111 122467777777 577889999999999998876332 346778889
Q ss_pred HhcCCCHHHHHHHHHHHHHhhCCC--CchhHhhccccccccceechhHH
Q 002459 735 CSSSGSKMARFMAALALAYMFDGR--MDEFALIGTSTESTSKCVSLDGA 781 (919)
Q Consensus 735 l~~~~~~~~~~~A~~~L~~l~~~~--~~~~~~~~~~~~~~~~~v~~~~~ 781 (919)
|..++++.+|..||.+|+-.+.|. ...+..+.++..+....|+..++
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGAL 645 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHH
Confidence 988888999999999999766555 45555777777888777776554
No 204
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.44 E-value=0.0034 Score=48.41 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCC
Q 002459 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGT 237 (919)
Q Consensus 179 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c 237 (919)
|+|++|+++++ .++.-. ......+++|++|++++| .++. ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 56777777776 333211 112345588888888876 4443 45678888888888876
No 205
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1.6 Score=50.11 Aligned_cols=283 Identities=16% Similarity=0.076 Sum_probs=159.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (919)
+.+-.++.+..+.+..+|+.++..|....... +. -++..|--+++++...+|..|.++|..++. .|.
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~----------l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRE----------LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHhh----------cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 56777778899999999999999877543322 11 156677778888999999999999999886 331
Q ss_pred HHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 002459 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L 540 (919)
+-.. .=.-|-.++.+.+..+...|..+|..-... .+...+.+ .+..++.+.+++..-+...|..+|...
T Consensus 316 -~v~~----cN~elE~lItd~NrsIat~AITtLLKTG~e-~sv~rLm~-----qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 316 -AVTV----CNLDLESLITDSNRSIATLAITTLLKTGTE-SSVDRLMK-----QISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred -cccc----cchhHHhhhcccccchhHHHHHHHHHhcch-hHHHHHHH-----HHHHHHHhccccceEEeHHHHHHHHhh
Confidence 1111 112334455566777777777666654432 23333222 222333221223333333344433332
Q ss_pred hcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHH
Q 002459 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEA 620 (919)
Q Consensus 541 ~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 620 (919)
- .-+ ..+.+..|..+|++...-+-+.....++..+... +++. ++.++..|...+.+ -+...-+
T Consensus 385 f---p~k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~---~pds-----Ke~~L~~LCefIED--ce~~~i~ 447 (865)
T KOG1078|consen 385 F---PRK----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE---NPDS-----KERGLEHLCEFIED--CEFTQIA 447 (865)
T ss_pred c---cHH----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh---Ccch-----hhHHHHHHHHHHHh--ccchHHH
Confidence 2 111 2245666777777644456666777777766653 2221 34556666666543 2334455
Q ss_pred HHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHH
Q 002459 621 AGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAED 700 (919)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~ 700 (919)
..+|.-|..+.+.. ......+..+...+-- .+..++.+|..+|.++....+. ......-.|.+.+.+.+.+
T Consensus 448 ~rILhlLG~EgP~a--~~Pskyir~iyNRviL---En~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 448 VRILHLLGKEGPKA--PNPSKYIRFIYNRVIL---ENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred HHHHHHHhccCCCC--CCcchhhHHHhhhhhh---hhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHH
Confidence 66666665441110 0000111222222211 5678899999999998833211 1112334466777888999
Q ss_pred HHHHHHHHHHHHc
Q 002459 701 VHETAAGALWNLA 713 (919)
Q Consensus 701 v~~~a~~aL~~l~ 713 (919)
++..|..+|.++-
T Consensus 519 vRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 519 VRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998886
No 206
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.36 E-value=0.009 Score=59.09 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH----HHHhCCCCCCEEeecCC
Q 002459 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGT 237 (919)
Q Consensus 178 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~~l~~~~~L~~L~l~~c 237 (919)
+|+|+.|.++....-...++..++..||+|++|++++| .+.+ ..+..+.+|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccC
Confidence 34555555554422223344555555566666666655 3332 12334445555555555
No 207
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.32 E-value=0.0049 Score=61.43 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=68.3
Q ss_pred HHHHHHhcCCCCCEEeeCCCC----CCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 002459 142 TLSVIVARHEALESLQLGPDF----CERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN 217 (919)
Q Consensus 142 ~l~~l~~~~~~L~~L~L~~~~----~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 217 (919)
.+..+...|.+|..|..++.. ..+|...-+..-...+++|+.+.++.|. .+.+.-+.-.-|.|.++...+. .
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s-~ 248 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT-T 248 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc-c
Confidence 355666777778888775310 1111111111111234677788887773 2223323333377777776553 2
Q ss_pred CCHH-HH-------------------------hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHH
Q 002459 218 VDEV-AL-------------------------GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITIS 271 (919)
Q Consensus 218 l~~~-~l-------------------------~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~ 271 (919)
+.+. .+ .....|+.||++++ .|+ .+..-..-.|+++.|++++|.+..-+
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~v~-- 323 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRTVQ-- 323 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceeeeh--
Confidence 2221 10 12246667777664 232 11222234567777777776543211
Q ss_pred HHHhcCcccceecccccCC
Q 002459 272 RLLTSSKSLKVLCALNCPV 290 (919)
Q Consensus 272 ~l~~~~~~L~~L~l~~c~~ 290 (919)
. +..+++|+.|+|+++..
T Consensus 324 n-La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 324 N-LAELPQLQLLDLSGNLL 341 (490)
T ss_pred h-hhhcccceEeecccchh
Confidence 1 12366677777776653
No 208
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.29 E-value=0.08 Score=56.40 Aligned_cols=184 Identities=20% Similarity=0.113 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHH-HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC----ccc----HHHHHHhcCHHH
Q 002459 444 LQSEAAKAIANLSVNAKVAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSVG----EEH----KGAIADAGGVKA 514 (919)
Q Consensus 444 ~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~----~~~----~~~i~~~g~i~~ 514 (919)
++..|.++++-+...+..|..+. -......+...+.+..-..|+.+.++++|++.- -++ .+.+... .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHH
Confidence 44455555555555665554433 233455666666666777899999999999981 122 2222211 2333
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCC----cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCC
Q 002459 515 LVDLIFKWSSGGDGVLERAAGALANLAADD----KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (919)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~----~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 590 (919)
++..-.........++.++.++|.|+..-- +.--....+|.+..++.-.--+....++.+++-++.||-.+.--
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~-- 563 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL-- 563 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc--
Confidence 333332224466789999999999998521 11112222344444443322233478999999999999985311
Q ss_pred cccchhhccchHHHHHHHhCC-CCHHHHHHHHHHHHhhcCC
Q 002459 591 NNSAVGQEAGALEALVQLTRS-PHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 591 ~~~~~~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~ 630 (919)
..+..-....+++.|..++.+ .+-.+|..|+.+|..-...
T Consensus 564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 112222345567777777654 5778999999999876654
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.28 E-value=0.11 Score=50.22 Aligned_cols=125 Identities=17% Similarity=0.093 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHc----------------CCHHHHHHHHhh---cCCCCHHHHHHHHHHHHHcc
Q 002459 612 PHEGVRQEAAGALWNLSFDDRNREAIAAA----------------GGVEALVVLAQS---CSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 612 ~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~----------------g~i~~Lv~ll~~---~~~~~~~~~~~A~~~L~~l~ 672 (919)
.+...-..++.+|.|++..+.....+.+. ..+..|+.++.. .......-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34445566888888998887776644432 246667777653 11123445668899999999
Q ss_pred cCcchhhHHHhc--CC--hHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHc---CCHHHHHHHHh
Q 002459 673 VSEANCIAIGRE--GG--VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEE---GGVPALVHLCS 736 (919)
Q Consensus 673 ~~~~~~~~l~~~--g~--v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~---~~i~~Lv~ll~ 736 (919)
..++.|+.+.+. +. +..|+.++.+.+..-|..+++++.|+|.+.+....+... +.+|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999864 34 677777778777777778999999999988888777764 44555555554
No 210
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.28 E-value=0.012 Score=41.46 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=15.4
Q ss_pred CCCEEEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 254 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
+|++|++++|.+++ +...+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 45555555554442 22223345555555555554
No 211
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.20 E-value=0.019 Score=69.30 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=49.9
Q ss_pred hCCCccEEEecCCcc--ch--HHHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHh
Q 002459 101 RCMNLQKLRFRGAES--AD--SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (919)
Q Consensus 101 ~~~~L~~L~l~~~~~--~~--~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~ 176 (919)
.|+.|++|-+.+... .. .-+-...|.|+.|+|++|..++ .++.....+-+|++|+|. +..+.. ++.-..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~---~t~I~~--LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLS---DTGISH--LPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhccccc---CCCccc--cchHHH
Confidence 345677777666542 11 1112256777777777765433 233334445567777774 223331 111112
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCC
Q 002459 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (919)
Q Consensus 177 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 215 (919)
.+.+|.+|++....... .+.-+...+++|++|.+...
T Consensus 616 ~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHhhheeccccccccc--cccchhhhcccccEEEeecc
Confidence 23455666665442211 11222233456666665543
No 212
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.16 E-value=0.42 Score=54.85 Aligned_cols=202 Identities=17% Similarity=0.044 Sum_probs=135.4
Q ss_pred cChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHH-hhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHH
Q 002459 457 VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW-NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (919)
Q Consensus 457 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~ 535 (919)
....-+...++.||...|+++.....+..+..+..+|. .+....+- ....++++...+.+ .....-...++.
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~--d~~~~en~E~L~ 564 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHN--DEKGLENFEALE 564 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhh--hHHHHHHHHHHH
Confidence 35667778889999999999998888888888888887 33221110 11234555555532 111122345788
Q ss_pred HHHHhhcCC-cchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhc-cchHHHHHHHhCCCC
Q 002459 536 ALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTRSPH 613 (919)
Q Consensus 536 ~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~ 613 (919)
++.||+..+ ..+..+..+-+++.+-.++...+ +..|..++..+.||.+++ .-..+.+.+ ....+.....+...+
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~-~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEEN-PALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhccc-HHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHhhh
Confidence 899998754 45667888777776666666554 889999999999999863 222222233 344555555566667
Q ss_pred HHHHHHHHHHHHhhcCCccc-HH-HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 614 EGVRQEAAGALWNLSFDDRN-RE-AIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~~~~-~~-~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
+....++++++..++...++ +. ......+...++.++.+ .++++|...+....|+.
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLF 698 (748)
T ss_pred hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHH
Confidence 77777888888866665444 33 33334678888999987 89999999999988854
No 213
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.10 E-value=0.069 Score=46.54 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=57.5
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 430 IRLLLDLA-KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 430 l~~Lv~lL-~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
++.|+++| .+.|+.+...|+.=|+.++. .|..|..+-+.|+-..+.+++.++|++|+..|+.++..+..
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45788888 44577888888888999887 88999999899999999999999999999999999887653
No 214
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.03 E-value=0.053 Score=56.76 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=54.7
Q ss_pred HHhhCCCCcEEEecCCCCCCH--HHHhCCCCCCEEeecCCCCCC-HH------HHHHH--------------HhcCCCCC
Q 002459 200 LAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMK-WG------VVSQV--------------WHKLPKLV 256 (919)
Q Consensus 200 l~~~~~~L~~L~l~~~~~l~~--~~l~~~~~L~~L~l~~c~~i~-~~------~l~~l--------------~~~~~~L~ 256 (919)
.....++|..|++++| .+.+ ..++.+..|+.|++++...-. .. ++..+ ..+..+|.
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 3445588888888886 4555 334566678888888752100 01 11111 13456788
Q ss_pred EEEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
.||+..|++ ..+..++..|.+|++|.++|.+
T Consensus 509 tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 509 TLDLQNNDL--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eeccCCCch--hhCChhhccccceeEEEecCCc
Confidence 888888765 3344556678899999998887
No 215
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.85 E-value=1.3 Score=51.88 Aligned_cols=166 Identities=17% Similarity=0.070 Sum_probs=101.5
Q ss_pred hccCCHHHHHHHHH-HHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHH
Q 002459 388 MQSTQEDVQERAAT-GLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAV 465 (919)
Q Consensus 388 L~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i 465 (919)
+.+.+...+..|++ .|..+..+++- ...++.+++...+.|.++++..--.|...+. +|+- .+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm--------------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~l 91 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM--------------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--AL 91 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HH
Confidence 44444444555554 55555554441 1234556666667778888777777777776 4421 11
Q ss_pred HHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc
Q 002459 466 AEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (919)
Q Consensus 466 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~ 545 (919)
. ++..+.+=+.++|+.+|..|++++..+-..+ +. ...++++.+++. ++++-|++.|+-++..+-.-+
T Consensus 92 L---avNti~kDl~d~N~~iR~~AlR~ls~l~~~e-----l~-~~~~~~ik~~l~---d~~ayVRk~Aalav~kly~ld- 158 (757)
T COG5096 92 L---AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE-----LL-GNIIDPIKKLLT---DPHAYVRKTAALAVAKLYRLD- 158 (757)
T ss_pred H---HHHHHHhhccCCCHHHHHHHHHHHHhcChHH-----HH-HHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHhcC-
Confidence 1 4566666677788888888888777665421 11 124566667773 477788888888887776422
Q ss_pred chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 546 CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 546 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
+....+.|.+..+..++.+.+ |.+..+|..+|..+-.
T Consensus 159 -~~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 159 -KDLYHELGLIDILKELVADSD-PIVIANALASLAEIDP 195 (757)
T ss_pred -HhhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhch
Confidence 223334566666666766665 7777788777777653
No 216
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.77 E-value=0.12 Score=43.88 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=48.5
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHH--HcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459 685 GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIV--EEGGVPALVHLCSSSGSKMARFMAALALAY 753 (919)
Q Consensus 685 g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~--~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 753 (919)
..+++++..+.+++..||..|+++|+|++.... ..+. =....+.|.+++.+.+ +.+|..| +.|-.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d-~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPD-ENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCc-hhHHHHH-HHHHH
Confidence 478899999999999999999999999985332 2232 2456778888888775 7777666 44433
No 217
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.76 E-value=0.24 Score=48.05 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=63.2
Q ss_pred cchHHHHHHHhCC------CCHHHHHHHHHHHHhhcCCcccHHHHHHc--CC--HHHHHHHHhhcCCCCHHHHHHHHHHH
Q 002459 599 AGALEALVQLTRS------PHEGVRQEAAGALWNLSFDDRNREAIAAA--GG--VEALVVLAQSCSNASPGLQERAAGAL 668 (919)
Q Consensus 599 ~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--g~--i~~Lv~ll~~~~~~~~~~~~~A~~~L 668 (919)
...+..|+..+.. ....-..+.+.+|.|++..++.|..+.+. +. +..|+.++.+ .+..-|..++++|
T Consensus 51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~---~s~iRR~Gva~~I 127 (192)
T PF04063_consen 51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEH---KSVIRRGGVAGTI 127 (192)
T ss_pred HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhcc---CcHHHHHHHHHHH
Confidence 3445556555433 22344567899999999999999999875 33 6677777776 6888899999999
Q ss_pred HHcccCcchhhHHHhcC
Q 002459 669 WGLSVSEANCIAIGREG 685 (919)
Q Consensus 669 ~~l~~~~~~~~~l~~~g 685 (919)
.|+|.+.+....+....
T Consensus 128 rNccFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 128 RNCCFDTDSHEWLLSDD 144 (192)
T ss_pred HHhhccHhHHHHhcCch
Confidence 99999988887777643
No 218
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.70 E-value=3.4 Score=44.14 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=142.2
Q ss_pred HHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-cch-----HHHHhcChHHHHHHHHhcCCchHHHHHHHHH
Q 002459 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCS-----MEVALAGGVHALVMLARSCKFEGVQEQAARA 578 (919)
Q Consensus 505 ~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~-~~~-----~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 578 (919)
.+...+.+..|+..|. .-+-+.+..++.+..++.... +.+ ..+. ......+..++...+.+++...+-..
T Consensus 71 Ei~~~dll~~Li~~L~---~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLP---KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGG---GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhh---hCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHH
Confidence 3446677888888884 478889999999999988743 222 1222 22233444444444456677788888
Q ss_pred HHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHh-hcCCcccHHHHHHc---CCHHHHHHHHhhcC
Q 002459 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN-LSFDDRNREAIAAA---GGVEALVVLAQSCS 654 (919)
Q Consensus 579 L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~l~~~---g~i~~Lv~ll~~~~ 654 (919)
|+.+.. .+...+.+.....+..+.+..+.++-++-..|...+.. |+.+...-...... ..+.....+|.+
T Consensus 147 lRec~k----~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-- 220 (335)
T PF08569_consen 147 LRECIK----HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-- 220 (335)
T ss_dssp HHHHTT----SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT---
T ss_pred HHHHHh----hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC--
Confidence 888887 35556666778888889999999999999999999987 55555443333333 345677778877
Q ss_pred CCCHHHHHHHHHHHHHcccCcchhhHHH----hcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccH
Q 002459 655 NASPGLQERAAGALWGLSVSEANCIAIG----REGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNA 719 (919)
Q Consensus 655 ~~~~~~~~~A~~~L~~l~~~~~~~~~l~----~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 719 (919)
++.-++..++..|+.+-.+..+...+. +..-+..++.+|++.+..++..|-.+..-+..+|..-
T Consensus 221 -~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~ 288 (335)
T PF08569_consen 221 -SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP 288 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred -CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence 899999999999999998877765444 3456778899999999999999999999988776543
No 219
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.68 E-value=2.1 Score=42.16 Aligned_cols=140 Identities=11% Similarity=-0.002 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHh-----cCCHHHHHHHHHHHHhhccCc--ccHHHHHHhcCHHH
Q 002459 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR-----SMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKA 514 (919)
Q Consensus 442 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~ 514 (919)
+.-...|+..|.-++..++.|..+.+...---+-.+|. .+.+-+|-.++++++.|...+ +.-..+...+.||.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 33445788888888999999999998866444445553 256778999999999999964 44555668899999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc--------ChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 515 LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA--------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 515 L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~--------g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
.++.+.. +++..+.-|..++..+..++.+-..+... ..+..++..+.+..++.+..++.++..+|+.
T Consensus 173 CLrime~---GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMES---GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhc---ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 9999964 88888888888998888888765444332 2344455445555557788899999999987
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.64 E-value=7 Score=42.35 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=103.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-------CHHHHHHHHHHHHHh
Q 002459 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIANL 455 (919)
Q Consensus 383 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~~l 455 (919)
.+..+++..+.+.|..|.-...++++.+|-+ ..++..+.++=+.+.+-++|.+. +...+..++.+|.-.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~----a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIV----ALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchh----hhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3666777777788888888999999887744 45677788999999999999862 334466678888888
Q ss_pred hcChHHHHHHHHhCcHHHHHHHHhcC-------CHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHh
Q 002459 456 SVNAKVAKAVAEEGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (919)
Q Consensus 456 ~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~ 520 (919)
+.+++....=--...||.|..++... +..+.+.+..+|+.++..+.....++..|+++.+.++-.
T Consensus 91 C~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 91 CRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 88776543322234689999998652 233788999999999999999999999999999997654
No 221
>PLN03150 hypothetical protein; Provisional
Probab=94.63 E-value=0.04 Score=64.86 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=38.0
Q ss_pred CcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCccccee
Q 002459 207 LTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (919)
Q Consensus 207 L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 283 (919)
++.|+|+++ .++. ..+..+++|+.|+|++|. ++. .+...+..+++|+.|+|++|.++...- ..+..+++|+.|
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEE
Confidence 455555554 2221 334556666666666542 221 112223455666666666655432211 112235666666
Q ss_pred cccccC
Q 002459 284 CALNCP 289 (919)
Q Consensus 284 ~l~~c~ 289 (919)
+|++|.
T Consensus 496 ~Ls~N~ 501 (623)
T PLN03150 496 NLNGNS 501 (623)
T ss_pred ECcCCc
Confidence 666654
No 222
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.57 E-value=0.61 Score=47.10 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHH
Q 002459 443 GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLI 519 (919)
Q Consensus 443 ~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL 519 (919)
.....|+.+|..++. ++..|..+.+..++..++.+|+. ..+.++..++.+|..+.-+ ++|.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345568899999888 99999999999999999999954 6788998898888777665 78999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhc
Q 002459 520 FKWSSGGDGVLERAAGALANLAA 542 (919)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~L~~ 542 (919)
+. .+.+.+++-..+..|.-...
T Consensus 186 k~-~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KS-KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cc-ccccHHHhHHHHHHHHHHHc
Confidence 87 55677787777776655443
No 223
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.56 E-value=2.2 Score=46.58 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=106.9
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCH----------------------------------HHHHHHHH
Q 002459 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNR----------------------------------LVAEEAAG 491 (919)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~----------------------------------~~~~~a~~ 491 (919)
.|+.+|-.+.. .+..-..+.+.+|+..+++.++.+-. .+...-++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 35555666554 55556667777888877776643111 12223334
Q ss_pred HHHhhcc-Cccc---HHHHHH-hcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhcChHHHHHHHHh-
Q 002459 492 GLWNLSV-GEEH---KGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLAR- 564 (919)
Q Consensus 492 ~L~~Ls~-~~~~---~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~l~~~g~i~~L~~ll~- 564 (919)
.+..+.. +... -+.+.+ ......|..++++...-.+.+...|+.++..+..++.. -..+.+.|.++.++..+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5555555 3322 222334 33455666667654445667888888888888876654 577788899999999888
Q ss_pred cC--CchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC
Q 002459 565 SC--KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (919)
Q Consensus 565 ~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 612 (919)
.. ...++....-.++..+|- +....+.+.+.+.++.+++++.+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicL----N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICL----NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhc----CHHHHHHHHhcChHHHHHHHhCCH
Confidence 32 336777777788888998 566778888899999999998775
No 224
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.44 E-value=0.012 Score=61.28 Aligned_cols=38 Identities=21% Similarity=0.053 Sum_probs=20.4
Q ss_pred CCccEEEecCCccchHHHHH--cCCCccEEEecCCCCCCH
Q 002459 103 MNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITD 140 (919)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~ 140 (919)
++|++|+|+.+....-.... ..++|.+|.+.+..++++
T Consensus 91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 67888888877544321111 344555555655444544
No 225
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=3.4 Score=51.15 Aligned_cols=330 Identities=18% Similarity=0.116 Sum_probs=155.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--Ch
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NA 459 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~ 459 (919)
..|...+.+.++..|..++--|..+........+ ...........+.++|.+.|+-+|..|.+-|+-.-. +.
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~------v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~ 894 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPE------VVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS 894 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCch------hhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc
Confidence 3455555677777765444333333332222111 112223344677888888888888888777665433 33
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCH-------HHHHHHHHHHH------hhccCcccHHHHHHhcCHHHHHHHHhcc-CCC
Q 002459 460 KVAKAVAEEGGINILAVLARSMNR-------LVAEEAAGGLW------NLSVGEEHKGAIADAGGVKALVDLIFKW-SSG 525 (919)
Q Consensus 460 ~~~~~i~~~g~i~~Lv~lL~~~~~-------~~~~~a~~~L~------~Ls~~~~~~~~i~~~g~i~~L~~lL~~~-~~~ 525 (919)
..++.+ +..|++-|-.+.. +..-..-++|+ +|+...|.+....+.|--+..-++++=. +..
T Consensus 895 ~~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 895 SLKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNA 969 (1702)
T ss_pred hhHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhc
Confidence 444443 3445544422111 11111112222 2222222222222222222222222100 112
Q ss_pred CHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 526 GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 526 ~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
.-.-+..|+.-+..++.....+.+-.-...||.|.++=-+++ ..+|......-..|..+ ...-....-..+++.|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D----~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITD----SKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccC----hHHHHHHHHHHHHHHH
Confidence 222333344444444432211100000123555555544554 67766655554455442 1111111124567777
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCccc---HHHHHHcCCHHHHHHHHhhcCCCCHHHHHH---HHHHHHHccc---Cc-
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSFDDRN---REAIAAAGGVEALVVLAQSCSNASPGLQER---AAGALWGLSV---SE- 675 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~---~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~---A~~~L~~l~~---~~- 675 (919)
+.-|.+....+|+.++-||..|-...+. .+.+- ..-..+.+.+.+ -.+.+|++ ++.+|..++. +.
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDD---IKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDD---IKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 7778888899999999999998776443 22222 123444555544 45556665 4555666653 11
Q ss_pred --chhhHHHhcCChHHHHHHH-----ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhc
Q 002459 676 --ANCIAIGREGGVAPLIALA-----RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSS 737 (919)
Q Consensus 676 --~~~~~l~~~g~v~~L~~lL-----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~ 737 (919)
...+. .+..++..| -++-++|+..++..+..|+.+....-+---..-+|.|++....
T Consensus 1120 ~~~~~~~-----~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1120 NGAKGKE-----ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred CcccHHH-----HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 11111 223333333 2456899999999999998754332111112346666666544
No 226
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.40 E-value=1.7 Score=46.38 Aligned_cols=205 Identities=14% Similarity=0.059 Sum_probs=142.5
Q ss_pred HHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHH-----HHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 002459 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKV-----AKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWN 495 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~-----~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~ 495 (919)
.+...+.+..|+..|..-+-+.+..++.+..++-. ..+. ...+.+. .-..+..+++. +++++.-.+-..|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 56778999999999999999999999999999765 2221 2233322 12223333332 577777888889999
Q ss_pred hccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhc---ChHHHHHHHHhcCCchHH
Q 002459 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALA---GGVHALVMLARSCKFEGV 571 (919)
Q Consensus 496 Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~---g~i~~L~~ll~~~~~~~~ 571 (919)
....+...+.+.....+..+.+.+. .++-++...|..++..+-.. .......... ..+...-.++.+++ =-+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~---~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-Yvt 225 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQ---LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-YVT 225 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTT---SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS-HHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhc---CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC-eEe
Confidence 9999888888888888888888874 47888988999999886653 3344444443 34566666777765 678
Q ss_pred HHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcc
Q 002459 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR 632 (919)
Q Consensus 572 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 632 (919)
+..++..|+.+-.......-....+.+..-+..++.+|++.+..+|..|..++.-...++.
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 8999999999987532211122344577888999999999999999999999988777643
No 227
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.26 E-value=3.1 Score=44.91 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=108.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcC----hHHHHHHHHhCcHHHHHHHHhc-------CCHHHHHHHHHHHHhhccCc
Q 002459 432 LLLDLAKSWREGLQSEAAKAIANLSVN----AKVAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGE 500 (919)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~----~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~ 500 (919)
.+..+++..+++-|..|+-..-.+..+ ..+|+.+.+.=|.+.+-+++.+ ++...+..++.+|.-.+..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 356666667777777777777777763 3577889999899999999865 24556778888899889887
Q ss_pred cc--HHHHHHhcCHHHHHHHHhccCCCCH----HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHH
Q 002459 501 EH--KGAIADAGGVKALVDLIFKWSSGGD----GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQ 574 (919)
Q Consensus 501 ~~--~~~i~~~g~i~~L~~lL~~~~~~~~----~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~ 574 (919)
+. .+.++. .||.|..++.+..+.+. .+.+.+-.+|..++..+.+...++..|+++.+.++-.-.+...-+.-
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 53 344444 58999999986333332 26677888999999999999999999999999987765443333444
Q ss_pred HHHHHHHHhc
Q 002459 575 AARALANLAA 584 (919)
Q Consensus 575 a~~~L~~L~~ 584 (919)
++.++.-+..
T Consensus 173 al~Vlll~~~ 182 (698)
T KOG2611|consen 173 ALKVLLLLVS 182 (698)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 228
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.01 E-value=0.23 Score=42.11 Aligned_cols=68 Identities=19% Similarity=0.063 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHH--HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 002459 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVA--EEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (919)
Q Consensus 427 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 497 (919)
...+++++..+.+++..+|..|+++|.+++..- +..+. -....+.|.+++.+.++.|+..| ..|-++-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 356789999999999999999999999998622 22222 12357788888888999988666 4555543
No 229
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.00 E-value=0.006 Score=68.34 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=59.0
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCC
Q 002459 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (919)
Q Consensus 178 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~ 254 (919)
+|.|++|+|+++ .+++-. ..+.|+.|++|||++| .+.. .+..+|. |+.|.++++. + ..+..+ .++.+
T Consensus 186 l~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l--~tL~gi-e~Lks 255 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-L--TTLRGI-ENLKS 255 (1096)
T ss_pred HHHhhhhccchh-hhhhhH---HHHhcccccccccccc-hhccccccchhhhh-heeeeecccH-H--HhhhhH-Hhhhh
Confidence 467888888877 343322 3355688888888876 3332 2233444 7788777653 2 122222 45677
Q ss_pred CCEEEeeccCCCHHHHHHHHhcCcccceecccccCC
Q 002459 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (919)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 290 (919)
|+.||+++|-+.+..=...+-.+..|+.|+|.|++.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888888886443322111222345677788877763
No 230
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.94 E-value=3 Score=41.93 Aligned_cols=193 Identities=13% Similarity=-0.002 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchHH-HHhc-ChHHHHHHHHhc------CCc--h---HHHHHHHHHHHHHhcCCCCCCc
Q 002459 525 GGDGVLERAAGALANLAADDKCSME-VALA-GGVHALVMLARS------CKF--E---GVQEQAARALANLAAHGDSNSN 591 (919)
Q Consensus 525 ~~~~~~~~a~~~L~~L~~~~~~~~~-l~~~-g~i~~L~~ll~~------~~~--~---~~~~~a~~~L~~L~~~~~~~~~ 591 (919)
-+++.++.|+.-|..--..-+.... +... |.+..|++=+-+ +.. . .-.-+|+..|..++++ ++
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh----pe 82 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH----PE 82 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-----TT
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC----hH
Confidence 3456666665544433332233333 3333 777777664332 110 1 1123566777788885 56
Q ss_pred ccchhhccchHHHHHHHhCCC-----CHHHHHHHHHHHHhhcCC--cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH
Q 002459 592 NSAVGQEAGALEALVQLTRSP-----HEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERA 664 (919)
Q Consensus 592 ~~~~~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A 664 (919)
.+..+.+....-.|..+|... -+.+|...+++++.|... .+....+.+...+|..++.+.. +++-.+..|
T Consensus 83 tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKtvA 159 (262)
T PF04078_consen 83 TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKTVA 159 (262)
T ss_dssp THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHHHH
T ss_pred HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHHHH
Confidence 688888888888888888654 256888899999999875 3447777888999999999998 899999999
Q ss_pred HHHHHHcccCcchhhHHHhc--------CChHHHHH-HHccCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 002459 665 AGALWGLSVSEANCIAIGRE--------GGVAPLIA-LARSEAEDVHETAAGALWNLAFNPGNALRIVE 724 (919)
Q Consensus 665 ~~~L~~l~~~~~~~~~l~~~--------g~v~~L~~-lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~ 724 (919)
..++.++-.++..-..+.+. ..+..++. +...+++.+.+..+.+-..|+.+|..+..+.+
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999988766543333321 12333443 33567888999999999999999988877764
No 231
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.93 E-value=2 Score=47.25 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=108.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCC----HHHHHHHHHHHHhhccCcccHHH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMN----RLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
...+++.+.+++...+..|+..|..++.++.....++...|+..|.+++.+++ ..+....+.++..+....-..=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 44788899999999999999999999999999999999999999999998854 45666666666665543210000
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc-chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
......|.....+... ...+..+...|+..|.++..... ....+.++-.+..|+..+..++ ..++..|...+..+..
T Consensus 165 ~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFR 242 (713)
T ss_pred ecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHh
Confidence 0111123333333322 34566777888999998887766 4566667778999999998776 6777776666666655
Q ss_pred C
Q 002459 585 H 585 (919)
Q Consensus 585 ~ 585 (919)
.
T Consensus 243 ~ 243 (713)
T KOG2999|consen 243 K 243 (713)
T ss_pred h
Confidence 4
No 232
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.60 E-value=3.5 Score=43.79 Aligned_cols=191 Identities=20% Similarity=0.175 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchh--hccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC---
Q 002459 556 VHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG--QEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD--- 630 (919)
Q Consensus 556 i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--- 630 (919)
+...+..+.+.. ...++.++..+.++..... ....+ .....++.+.+.++.+..+-+..|+.++.-++..
T Consensus 45 L~~~Id~l~eK~-~~~Re~aL~~l~~~l~~~~----~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTEKS-SSTREAALEALIRALSSRY----LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 334444555554 6788889888887775421 11111 1344567777778777665566677776666554
Q ss_pred cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc---Cc-chhhHHHhcCChHHHHH--HHcc--------
Q 002459 631 DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV---SE-ANCIAIGREGGVAPLIA--LARS-------- 696 (919)
Q Consensus 631 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~---~~-~~~~~l~~~g~v~~L~~--lL~~-------- 696 (919)
.+....+.+. ..+.|.+.+.+ ...++..|..++.+|+-++. .+ +...... ..++.+.. ..++
T Consensus 120 g~~~~ei~~~-~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 120 GEDSEEIFEE-LKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CccHHHHHHH-HHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCccccc
Confidence 2334455443 67888888886 23455676666666655543 21 1111000 11221111 1111
Q ss_pred --CCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhC
Q 002459 697 --EAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFD 756 (919)
Q Consensus 697 --~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~ 756 (919)
+++.+...|+.+..-|.. -+...-.-.-...+|.|..+|.+++ ..+|.+|..+|+.+..
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALLYE 257 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 135688888888877765 2332212222456999999999885 8899999999987753
No 233
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.89 Score=55.88 Aligned_cols=306 Identities=17% Similarity=0.110 Sum_probs=152.8
Q ss_pred HHHHHHHccCCHHHHHHHH-HHHHH---hhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHH---HhhccCcccH
Q 002459 431 RLLLDLAKSWREGLQSEAA-KAIAN---LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL---WNLSVGEEHK 503 (919)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~-~~L~~---l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L---~~Ls~~~~~~ 503 (919)
+.+...+.++++..|..++ |.|.- ++.-++..-..- ....+..++|.+.|+-+|..|.+.| +.|+.. +.+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~--eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-~~k 897 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK--EIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-SLK 897 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH--HHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc-hhH
Confidence 3455566678999887644 43332 333333222111 1236788888888888888776554 444443 233
Q ss_pred HHHHHhcCHHHHHHHHhccC------CCCHHHHHH-------------HHHHHHHhhcCCcchHHHHhcChHHHHHHHHh
Q 002459 504 GAIADAGGVKALVDLIFKWS------SGGDGVLER-------------AAGALANLAADDKCSMEVALAGGVHALVMLAR 564 (919)
Q Consensus 504 ~~i~~~g~i~~L~~lL~~~~------~~~~~~~~~-------------a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~ 564 (919)
.. .+..|++-|.... +++.++.+. .-.=|++|+.+ +.+...|-.+.++.+
T Consensus 898 ~~-----LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd------l~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 898 KS-----LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD------LGQPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh------cCChHHHHHHHHHhh
Confidence 33 3444554442200 111111111 11122233321 111123444555555
Q ss_pred cCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-HHHHHHcCCH
Q 002459 565 SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-REAIAAAGGV 643 (919)
Q Consensus 565 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~l~~~g~i 643 (919)
+.-...-+.-|+..+..++... .+..+.. -...||.|.++=.+++..++.....+=..|..++.. -+.... ..+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a--~~kl~p~--l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl 1041 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQA--GEKLEPY--LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EIL 1041 (1702)
T ss_pred hhchhhcccchhhchHHHHHHH--HHhhhhH--HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHH
Confidence 4433344455666666666531 0111111 134566666666667777776544444446655333 222211 234
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhc-CChHHHHHHHccCCHHHHHHH---HHHHHHHcC---Cc
Q 002459 644 EALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGRE-GGVAPLIALARSEAEDVHETA---AGALWNLAF---NP 716 (919)
Q Consensus 644 ~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~-g~v~~L~~lL~~~~~~v~~~a---~~aL~~l~~---~~ 716 (919)
+-|+.-+.+ ...++|++++.+|..+-...+.-+..-.- .....+.+...+=.+.||++| +.+|..++. ++
T Consensus 1042 ~eLL~~lt~---kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1042 DELLVNLTS---KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred HHHHHhccc---hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 444444444 88899999999999998764332211110 123334444444445666664 555555543 22
Q ss_pred c---cHHHHHHcCCHHHHH--HHHhcCCCHHHHHHHHHHHHHhhCCCCch
Q 002459 717 G---NALRIVEEGGVPALV--HLCSSSGSKMARFMAALALAYMFDGRMDE 761 (919)
Q Consensus 717 ~---~~~~l~~~~~i~~Lv--~ll~~~~~~~~~~~A~~~L~~l~~~~~~~ 761 (919)
. ...++. ...+|.|+ .++ +.-+.+|..+..++..|.......
T Consensus 1119 ~~~~~~~~~l-~~iLPfLl~~gim--s~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1119 TNGAKGKEAL-DIILPFLLDEGIM--SKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred CCcccHHHHH-HHHHHHHhccCcc--cchHHHHHHHHHHHHHHHHhchhh
Confidence 1 112222 24466666 233 234789999999998888766544
No 234
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.52 E-value=3.3 Score=48.11 Aligned_cols=297 Identities=13% Similarity=0.092 Sum_probs=159.0
Q ss_pred HHHHHHHHhhcChHHHHHHHHhCcHHHHHHHH----hcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhcc
Q 002459 447 EAAKAIANLSVNAKVAKAVAEEGGINILAVLA----RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW 522 (919)
Q Consensus 447 ~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~ 522 (919)
.++.+|.-|..--+.-..+.+.|. ..++-++ +-.+.-+...+++.|+.|+.+......+++.|||..|+.+-+
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr-- 404 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPR-- 404 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCC--
Confidence 344444444443455555555544 3333333 224556677888889999998888899999999988877653
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcchHHHHhc------ChHHHHHHHHhcCCchHHHH------HHHHHHHHHhcCCCCCC
Q 002459 523 SSGGDGVLERAAGALANLAADDKCSMEVALA------GGVHALVMLARSCKFEGVQE------QAARALANLAAHGDSNS 590 (919)
Q Consensus 523 ~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~------g~i~~L~~ll~~~~~~~~~~------~a~~~L~~L~~~~~~~~ 590 (919)
..+.......+|+.+.......+.+... ..+..-+.++.-+. ..-+. .++...+.+-
T Consensus 405 ---~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~-~~~~~~~~~ff~~~f~frail------- 473 (1516)
T KOG1832|consen 405 ---VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQ-DQARKNSALFFAAAFVFRAIL------- 473 (1516)
T ss_pred ---chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcch-hhccchHHHHHHHHHHHHHHH-------
Confidence 2233444556777887766655544332 33344444554332 22222 2222222222
Q ss_pred cccchhhccchHHHHHHHhCC--------CC---HHH--------HHHHHHHHHh-h----cCCccc-HHHHHHcCCHHH
Q 002459 591 NNSAVGQEAGALEALVQLTRS--------PH---EGV--------RQEAAGALWN-L----SFDDRN-REAIAAAGGVEA 645 (919)
Q Consensus 591 ~~~~~~~~~~~i~~Lv~lL~~--------~~---~~~--------~~~a~~~L~~-L----s~~~~~-~~~l~~~g~i~~ 645 (919)
..+-..+.++.|+.+++. .+ ++. -...|.+|+. + ...-++ +..-+..|+.+.
T Consensus 474 ---~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~ 550 (1516)
T KOG1832|consen 474 ---DAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGS 550 (1516)
T ss_pred ---HHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCc
Confidence 133356777777777653 11 111 1123444432 1 111111 222233344444
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHH---ccc-----CcchhhHHHhcCChHHHHHHHccC--------CHHHHHHHH
Q 002459 646 LVVLAQSCSN---ASPGLQERAAGALWG---LSV-----SEANCIAIGREGGVAPLIALARSE--------AEDVHETAA 706 (919)
Q Consensus 646 Lv~ll~~~~~---~~~~~~~~A~~~L~~---l~~-----~~~~~~~l~~~g~v~~L~~lL~~~--------~~~v~~~a~ 706 (919)
.+.-+...-. .+.+..+..++.+-. +.. .-+....+.+.+++..++.+.... ..+....|+
T Consensus 551 ~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al 630 (1516)
T KOG1832|consen 551 SMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYAL 630 (1516)
T ss_pred cccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHH
Confidence 3332221000 111222222222222 211 234456778889999999887542 367888999
Q ss_pred HHHHHHcCCcccHHHHHH--------cCCHHHHHHHHhcC---CCHHHHHHHHHHHHHhhCCCCc
Q 002459 707 GALWNLAFNPGNALRIVE--------EGGVPALVHLCSSS---GSKMARFMAALALAYMFDGRMD 760 (919)
Q Consensus 707 ~aL~~l~~~~~~~~~l~~--------~~~i~~Lv~ll~~~---~~~~~~~~A~~~L~~l~~~~~~ 760 (919)
++|.-+..-|..+..++. ..|+..+++.-.-. .+|.++..|...+-++.-+.++
T Consensus 631 ~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~ 695 (1516)
T KOG1832|consen 631 GVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT 695 (1516)
T ss_pred hheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC
Confidence 999988888888877763 12455555433222 3588999999998887766543
No 235
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.49 E-value=0.14 Score=36.19 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=12.3
Q ss_pred CCcEEEecCCCCCCH-HH-HhCCCCCCEEeecCC
Q 002459 206 NLTDIGFLDCLNVDE-VA-LGNVLSVRFLSVAGT 237 (919)
Q Consensus 206 ~L~~L~l~~~~~l~~-~~-l~~~~~L~~L~l~~c 237 (919)
+|++|++++| .+++ .. +.+|++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 3444444444 2333 12 344444444444443
No 236
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.43 E-value=0.00084 Score=61.12 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=23.6
Q ss_pred CCCcEEEecCCCCCCHHHH----hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccC
Q 002459 205 PNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (919)
Q Consensus 205 ~~L~~L~l~~~~~l~~~~l----~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (919)
|.|+.|+++++ ++.+..+ ..+..|+.|.++.... +.+..-..++++|+.|.+..++
T Consensus 102 p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 102 PALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred chhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCc
Confidence 55555555554 3444332 2234455555443211 1111112344555555555543
No 237
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2.8 Score=48.71 Aligned_cols=222 Identities=13% Similarity=0.040 Sum_probs=139.0
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCc
Q 002459 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (919)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 591 (919)
++++-+.+...+++...++..++..|..+.+.-+....+...+.+...+..+++.+ +.+--+|...+..||..
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh------
Confidence 34455555544566777888999999999987666677778899999999999886 78888999988888864
Q ss_pred ccchhhccchHHHHHH-HhCCC---CHHHHHHHHHHHHhhcCC-ccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 592 NSAVGQEAGALEALVQ-LTRSP---HEGVRQEAAGALWNLSFD-DRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 592 ~~~~~~~~~~i~~Lv~-lL~~~---~~~~~~~a~~~L~~Ls~~-~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
..+..++.|.. +.... ..+.+...-.++.++... .+- ..+.. -.+...+...++ ++.+.|..++
T Consensus 799 -----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvre---pd~~~RaSS~ 868 (982)
T KOG4653|consen 799 -----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVRE---PDHEFRASSL 868 (982)
T ss_pred -----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCC---chHHHHHhHH
Confidence 23567788876 34332 123444444666665432 111 11110 124445555554 6777899999
Q ss_pred HHHHHcccCcch--hhHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHHcCCccc-HHHH---HHcCCHHHHHHHHhcC
Q 002459 666 GALWGLSVSEAN--CIAIGREGGVAPLIALAR-SEAEDVHETAAGALWNLAFNPGN-ALRI---VEEGGVPALVHLCSSS 738 (919)
Q Consensus 666 ~~L~~l~~~~~~--~~~l~~~g~v~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~-~~~l---~~~~~i~~Lv~ll~~~ 738 (919)
+++++++.-... ...+. ..+..++.+.. ++...+|++|+..+..+-..-+- --.+ .--+....+......+
T Consensus 869 a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~ 946 (982)
T KOG4653|consen 869 ANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQH 946 (982)
T ss_pred HHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999853211 11222 24555666665 45577999999999888653321 1111 1223455556666666
Q ss_pred CCHHHHHHHHHHHH
Q 002459 739 GSKMARFMAALALA 752 (919)
Q Consensus 739 ~~~~~~~~A~~~L~ 752 (919)
+++.++..|..++-
T Consensus 947 ~dd~~klhaql~le 960 (982)
T KOG4653|consen 947 DDDGLKLHAQLCLE 960 (982)
T ss_pred chhHHHHHHHHHHH
Confidence 65667777766664
No 238
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.11 E-value=0.083 Score=50.24 Aligned_cols=16 Identities=31% Similarity=0.264 Sum_probs=7.7
Q ss_pred cCCCCCEEEeeccCCC
Q 002459 251 KLPKLVGLDVSRTDVG 266 (919)
Q Consensus 251 ~~~~L~~L~l~~~~i~ 266 (919)
.||+|++|.+-+++++
T Consensus 111 ~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCccceeeecCCchh
Confidence 3455555555554443
No 239
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.97 E-value=4.1 Score=39.38 Aligned_cols=93 Identities=19% Similarity=0.109 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHH
Q 002459 568 FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 647 (919)
Q Consensus 568 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv 647 (919)
++.++.+++.+++.|+... + . .-+..++.+...|.++++.+|..|+.+|..|...+--+.. ...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~----~-~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---P----N-LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---c----H-HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHH
Confidence 3678999999999998752 1 1 1245688899999999999999999999998765322111 11235666
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHcccC
Q 002459 648 VLAQSCSNASPGLQERAAGALWGLSVS 674 (919)
Q Consensus 648 ~ll~~~~~~~~~~~~~A~~~L~~l~~~ 674 (919)
.++.+ .+++++..|...+..+...
T Consensus 70 ~~l~D---~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVD---ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcC---CCHHHHHHHHHHHHHHHHh
Confidence 77766 8999999999999998865
No 240
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.94 E-value=0.094 Score=56.69 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=69.5
Q ss_pred hcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHhCC-
Q 002459 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV- 226 (919)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~~- 226 (919)
..|+++++|+++ .| .++.- ..-.++|++|.+++|..++. +.. ...++|+.|++++|..+. .+
T Consensus 49 ~~~~~l~~L~Is--~c-~L~sL-----P~LP~sLtsL~Lsnc~nLts--LP~--~LP~nLe~L~Ls~Cs~L~-----sLP 111 (426)
T PRK15386 49 EEARASGRLYIK--DC-DIESL-----PVLPNELTEITIENCNNLTT--LPG--SIPEGLEKLTVCHCPEIS-----GLP 111 (426)
T ss_pred HHhcCCCEEEeC--CC-CCccc-----CCCCCCCcEEEccCCCCccc--CCc--hhhhhhhheEccCccccc-----ccc
Confidence 447999999995 46 44332 12234799999999866421 111 113689999999986554 23
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcC-CCCCEEEeeccC-CCHHHHHHHHhcCcccceecccccCCc
Q 002459 227 LSVRFLSVAGTSNMKWGVVSQVWHKL-PKLVGLDVSRTD-VGPITISRLLTSSKSLKVLCALNCPVL 291 (919)
Q Consensus 227 ~~L~~L~l~~c~~i~~~~l~~l~~~~-~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~l 291 (919)
++|+.|++.+. .... + ..+ ++|+.|.+.+.+ .....+... -.++|++|++++|..+
T Consensus 112 ~sLe~L~L~~n-~~~~-----L-~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS-----I-KNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred cccceEEeCCC-CCcc-----c-ccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 47888888643 2211 1 223 367788775422 111111110 1367889999888855
No 241
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.90 E-value=0.067 Score=32.01 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=9.7
Q ss_pred CCCCEEEeeccCCCHHHHHHH
Q 002459 253 PKLVGLDVSRTDVGPITISRL 273 (919)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l 273 (919)
++|++|+|++|.++++++..|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555555443
No 242
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.86 E-value=0.4 Score=45.17 Aligned_cols=149 Identities=21% Similarity=0.138 Sum_probs=94.7
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHH-HHHhcCCchHHHHHHHHHHHHHhcCCCCCC
Q 002459 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV-MLARSCKFEGVQEQAARALANLAAHGDSNS 590 (919)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 590 (919)
++.++..+.. ...+++++..+.-++..+- +..++.. .. .+...+ ..+..++ .+....+..++..+-... .+
T Consensus 5 l~~lL~~L~~-~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~-~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~--~d 76 (157)
T PF11701_consen 5 LDTLLTSLDM-LRQPEEVRSHALVILSKLL--DAAREEF-KE-KISDFIESLLDEGE-MDSLIIAFSALTALFPGP--PD 76 (157)
T ss_dssp CCHHHHHHHC-TTTSCCHHHHHHHHHHHHH--HHHHHHH-HH-HHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTT--HH
T ss_pred HHHHHHHhcc-cCCCHhHHHHHHHHHHHHH--HHhHHHH-HH-HHHHHHHHHHcccc-chhHHHHHHHHHHHhCCC--HH
Confidence 3445554531 1356678888887877773 1111111 11 222233 2333322 344556666666664431 23
Q ss_pred cccchhhccchHHHHHHHhC--CCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHH-HHHHHHHH
Q 002459 591 NNSAVGQEAGALEALVQLTR--SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPG-LQERAAGA 667 (919)
Q Consensus 591 ~~~~~~~~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~-~~~~A~~~ 667 (919)
-....+..+|..+.++.+.. +++..++..++.+|..=+.+...|..+.++ +++.|-+..+. +.+.. ++..|+-+
T Consensus 77 v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 77 VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHHHH
Confidence 34556668899999999998 778899999999999988888888888776 68899999864 25555 88999888
Q ss_pred HHHc
Q 002459 668 LWGL 671 (919)
Q Consensus 668 L~~l 671 (919)
|+++
T Consensus 154 L~Kl 157 (157)
T PF11701_consen 154 LCKL 157 (157)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8764
No 243
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.80 E-value=0.1 Score=63.25 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=76.0
Q ss_pred cCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH--HHHhCC
Q 002459 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNV 226 (919)
Q Consensus 149 ~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--~~l~~~ 226 (919)
.||.|++|-+.. ...--......+..++|.|+.|+|++|...+ .++.....+-+|++|+++++ .+.. .++.++
T Consensus 543 ~~~~L~tLll~~--n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQR--NSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT-GISHLPSGLGNL 617 (889)
T ss_pred CCCccceEEEee--cchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC-CccccchHHHHH
Confidence 566777777742 1100011112234567888888888764322 22222333467888888886 5663 577788
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccC--CCHHHHHHHHhcCcccceecccccC
Q 002459 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD--VGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 227 ~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
.+|.+|++..+....- +..+...+++|++|.+.+.. .+...+..+ ..+++|+.+....+.
T Consensus 618 k~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS 679 (889)
T ss_pred Hhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch
Confidence 8888888877654321 13344557888888888752 333334433 445566666554433
No 244
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.72 E-value=0.096 Score=55.94 Aligned_cols=38 Identities=26% Similarity=0.622 Sum_probs=34.5
Q ss_pred cCcCCCCHHHHHHHHcCCC-HHHHHHHHhhcHhHHHHhc
Q 002459 38 VDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGA 75 (919)
Q Consensus 38 ~~~~~LP~eil~~If~~L~-~~d~~~~~~vck~w~~l~~ 75 (919)
..|++||+|++..|.++|+ ..|+.+.+.||+.||....
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 3599999999999999996 8899999999999999744
No 245
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.26 E-value=1.6 Score=44.13 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHh-hcChHHHHHHHHhCcHH
Q 002459 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANL-SVNAKVAKAVAEEGGIN 472 (919)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~ 472 (919)
....|...|..++--. +..+..+.+..+++.++++|.. ..+.++..++.+|..+ ..++.+...+-+.+|+.
T Consensus 107 li~~aL~vLQGl~LLH-------p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-------PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLS 179 (257)
T ss_pred HHHHHHHHHHHHHHcC-------chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence 3455677777776543 4567788899999999999954 6789999999999885 55899999999999999
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhhccC
Q 002459 473 ILAVLARS--MNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 473 ~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~ 499 (919)
.++.++++ .+.+++..++..|+-....
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHHcc
Confidence 99999987 4778888888888776664
No 246
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.16 E-value=0.25 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSV 457 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (919)
+|.++++++++++++|..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999874
No 247
>PLN03150 hypothetical protein; Provisional
Probab=92.16 E-value=0.2 Score=59.04 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=69.1
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH---HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC
Q 002459 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (919)
Q Consensus 180 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~---~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~ 256 (919)
.++.|+|+++ .++...-.. ...+++|+.|+|++| .++. ..+..+++|+.|+|++|. ++.. +.....++++|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~-iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNS-FNGS-IPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCC-CCCC-CchHHhcCCCCC
Confidence 4788899887 444322222 335699999999998 4442 357889999999999873 4322 223346889999
Q ss_pred EEEeeccCCCHHHHHHHHhcCcccceecccccCC
Q 002459 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (919)
Q Consensus 257 ~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 290 (919)
.|+|++|.++...-..+.....++..+++.++..
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999998765332222222234566777776653
No 248
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=26 Score=41.88 Aligned_cols=226 Identities=19% Similarity=0.130 Sum_probs=124.1
Q ss_pred cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCc-----------
Q 002459 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF----------- 568 (919)
Q Consensus 500 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~----------- 568 (919)
.+|+..+.+++|+..++.++ -+++-+...+.++..|...+..+ +.+.-+-.++..|+++--
T Consensus 674 teNqklFreanGvklilpfl-----indehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~Isgeqyklh 745 (2799)
T KOG1788|consen 674 TENQKLFREANGVKLILPFL-----INDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKLH 745 (2799)
T ss_pred chhhHHHHhhcCceEEEEee-----echHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHHH
Confidence 45666666666666655555 23344444555555554322211 011234456666665210
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC----------CCHHHHHHHHHHHHhh-----cCCccc
Q 002459 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS----------PHEGVRQEAAGALWNL-----SFDDRN 633 (919)
Q Consensus 569 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~----------~~~~~~~~a~~~L~~L-----s~~~~~ 633 (919)
........++++.+.-. +...+..+.+.++...|...|.. +|.-+-..-...|..+ +.++.|
T Consensus 746 fsllcdlmGalwrivgv---ngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasN 822 (2799)
T KOG1788|consen 746 FSLLCDLMGALWRIVGV---NGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASN 822 (2799)
T ss_pred HHHHHHHHHHHHHHHcc---CchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchh
Confidence 12233455666666533 45567778888888888877643 1222222333333322 333444
Q ss_pred HHHH-------------HHcC---------CHHHHHHHH-hhcCCCCHHHHHHHHHHHHHccc-----------Ccchhh
Q 002459 634 REAI-------------AAAG---------GVEALVVLA-QSCSNASPGLQERAAGALWGLSV-----------SEANCI 679 (919)
Q Consensus 634 ~~~l-------------~~~g---------~i~~Lv~ll-~~~~~~~~~~~~~A~~~L~~l~~-----------~~~~~~ 679 (919)
+..+ .+.| .|..+.++- +..-++.-.--..|+..+..+-. .....+
T Consensus 823 rmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~ 902 (2799)
T KOG1788|consen 823 RMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQ 902 (2799)
T ss_pred hhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHh
Confidence 4332 2223 122222221 11001111222244444444421 123467
Q ss_pred HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHh
Q 002459 680 AIGREGGVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCS 736 (919)
Q Consensus 680 ~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~ 736 (919)
.|..+|++..|++.+-...+..+..-+..+..++. +|.++...-..|.++.|++++.
T Consensus 903 ~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 903 KIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred hhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 88899999999999988889999888999988887 7888888888899988888764
No 249
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.00 E-value=42 Score=42.26 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=39.2
Q ss_pred HhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHH
Q 002459 682 GREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMA 743 (919)
Q Consensus 682 ~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~ 743 (919)
...+.+..|..+.+..+.++|..|+.+|..+|..++. .+.+......+-..+.+.+++..
T Consensus 1222 ~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~--l~~~~~v~nly~~ila~~n~~~~ 1281 (1692)
T KOG1020|consen 1222 LKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPS--LFTSREVLNLYDEILADDNSDIK 1281 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCch--hhhhHHHHHHHHHHHhhhcccHH
Confidence 3456667777777888899999999999999873321 12333344455566665554433
No 250
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.87 E-value=11 Score=41.70 Aligned_cols=177 Identities=16% Similarity=0.091 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCC-CCHHHHHHHHHHHHHhhcCCcchHH
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS-GGDGVLERAAGALANLAADDKCSME 549 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~~~~~a~~~L~~L~~~~~~~~~ 549 (919)
...+.+.+.+++...+..|...|..++.+......++...++..|..++.+... ...++....+.++..+-...-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456778888888888888999999999999999999999999999999976211 1345555666666655433222222
Q ss_pred HHhcChHHHHHHHHhc-CCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhc
Q 002459 550 VALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLS 628 (919)
Q Consensus 550 l~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 628 (919)
.+...+|.....+..- ..+..+...|+..|.++... ....+..+.++--++.|+..++..+..++..|...+..+-
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~---s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG---SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 2223334344433321 11245667888888888875 2334556667788999999999999999988877777765
Q ss_pred CC--cccHHHHHHcCCHHHHHHHH
Q 002459 629 FD--DRNREAIAAAGGVEALVVLA 650 (919)
Q Consensus 629 ~~--~~~~~~l~~~g~i~~Lv~ll 650 (919)
.. ++-|..+.+.-....+...+
T Consensus 242 ~~a~~~~R~~~~~~l~~~~~R~ai 265 (713)
T KOG2999|consen 242 RKAPDDKRFEMAKSLEQKQFRNAI 265 (713)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHH
Confidence 43 33365665543344444444
No 251
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.75 E-value=0.13 Score=57.38 Aligned_cols=171 Identities=20% Similarity=0.248 Sum_probs=93.5
Q ss_pred CCccEEEecCCccchHHHHH-cC-CCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCC
Q 002459 103 MNLQKLRFRGAESADSIIHL-QA-RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (919)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~ 180 (919)
+.++.|.+.+....+-.... .. ++|+.|++++.. +.+ +..-...+++|+.|+++ .+ .+++.. ......++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~--~N-~l~~l~--~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLS--FN-DLSDLP--KLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhh--hhhhhhccccccccccC--Cc-hhhhhh--hhhhhhhh
Confidence 45666776666544322212 23 277777777654 222 21224557788888874 23 333321 11114567
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH-HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEE
Q 002459 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (919)
Q Consensus 181 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~ 259 (919)
|+.|++++. .+++ +........+|++|.++++..+.. ..+..++++..|.+.+. .+.+ +......++.|++|+
T Consensus 188 L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~--~~~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLED--LPESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeee--ccchhccccccceec
Confidence 788888776 3322 111112334577788777643333 34566677777765543 2221 123445677788888
Q ss_pred eeccCCCHHHHHHHHhcCcccceecccccCC
Q 002459 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (919)
Q Consensus 260 l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 290 (919)
++++.+++-.- +....+++.|++++...
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCccc
Confidence 88876544332 33467788888887663
No 252
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.75 E-value=1.5 Score=41.29 Aligned_cols=143 Identities=22% Similarity=0.138 Sum_probs=93.2
Q ss_pred HHHHhhc--cCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-Ch
Q 002459 383 LLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (919)
Q Consensus 383 ~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~ 459 (919)
.++..|. ...++++..+.-++..+-.. ...-...-.-+.+-..+..++.+....+..++..+.. .+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~-----------~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDA-----------AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 3555553 46678888888888886310 1111222223344455555555567788888888877 77
Q ss_pred HHHHHHHHh-CcHHHHHHHHh--cCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHH-HHHHHHH
Q 002459 460 KVAKAVAEE-GGINILAVLAR--SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG-VLERAAG 535 (919)
Q Consensus 460 ~~~~~i~~~-g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~-~~~~a~~ 535 (919)
+....+... |.++.++.+.. .++..++..++.+|..-+.++..|..|.+. +++.|-+.... +.++. ++..|+-
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~v 152 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAAV 152 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHHH
Confidence 777777755 55778888888 688889999999888888776666665554 78888888853 35555 6777766
Q ss_pred HHHH
Q 002459 536 ALAN 539 (919)
Q Consensus 536 ~L~~ 539 (919)
.|..
T Consensus 153 ~L~K 156 (157)
T PF11701_consen 153 GLCK 156 (157)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 253
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.54 E-value=6.2 Score=46.99 Aligned_cols=202 Identities=18% Similarity=0.076 Sum_probs=108.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--ccHHHHHHhcCHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhc----
Q 002459 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLAA---- 542 (919)
Q Consensus 470 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~L~~---- 542 (919)
++..+.+++.+....-. .|...|..+.... +..+ .+..+..++... ...++.+...|+.+++.+..
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 36667777766332222 2334444444321 2222 234455555321 12445666667766666653
Q ss_pred CC------cchHHHHhcChHHHHHHHHh---cCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-
Q 002459 543 DD------KCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP- 612 (919)
Q Consensus 543 ~~------~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~- 612 (919)
.. ...........++.+...+. +..+.+.+..++.+|+|+.. ...++.|..++...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------------~~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------------PESIPVLLPYIEGKE 534 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------------GGGHHHHHTTSTTSS
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------------chhhHHHHhHhhhcc
Confidence 21 11112222345566666555 33335777889999999974 25688888888776
Q ss_pred --CHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHH
Q 002459 613 --HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPL 690 (919)
Q Consensus 613 --~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L 690 (919)
+..+|..|+.+|..++...... +.+.+.+++.+ ...+.++|.+|..+|...-.+.. .+..+
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n-~~e~~EvRiaA~~~lm~~~P~~~---------~l~~i 597 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMN-TTEDPEVRIAAYLILMRCNPSPS---------VLQRI 597 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH--TTS-HHHHHHHHHHHHHT---HH---------HHHHH
T ss_pred ccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcC-CCCChhHHHHHHHHHHhcCCCHH---------HHHHH
Confidence 6789999999999886553321 34667777765 34678899999988877432221 34555
Q ss_pred HHHHcc-CCHHHHHHHHHHH
Q 002459 691 IALARS-EAEDVHETAAGAL 709 (919)
Q Consensus 691 ~~lL~~-~~~~v~~~a~~aL 709 (919)
...+.. ++.+|.......|
T Consensus 598 ~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 598 AQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHhc
Confidence 566643 4566666555444
No 254
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.49 E-value=0.32 Score=31.23 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
+|.++++++++++++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 255
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=17 Score=41.72 Aligned_cols=110 Identities=23% Similarity=0.209 Sum_probs=75.7
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhh
Q 002459 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (919)
Q Consensus 518 lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 597 (919)
+|+...+.+..++...+..|.-+.........-+-++....+..-+.+.. +.|+..|+.+|..+-..+. ++
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~-de------- 160 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPK-DE------- 160 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCC-CC-------
Confidence 34433567888999999999888864444444455567777777777776 8899999999999974321 12
Q ss_pred ccchHHHHHHHhCCC-CHHHHHHHHHHHHhhcCCcccHHHHHH
Q 002459 598 EAGALEALVQLTRSP-HEGVRQEAAGALWNLSFDDRNREAIAA 639 (919)
Q Consensus 598 ~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~l~~ 639 (919)
+..++..+..+++++ +++||..| |.|++-++.....+++
T Consensus 161 e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 346778888888764 77898864 5666666555444443
No 256
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.28 E-value=31 Score=39.35 Aligned_cols=175 Identities=19% Similarity=0.133 Sum_probs=99.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC-cccHHHHHHh
Q 002459 432 LLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADA 509 (919)
Q Consensus 432 ~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~ 509 (919)
.++..-+ +++..+..|+..+..... -|+..+. ++..++.+..+++..||..|+..|..++.+ ++...++
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 3444444 578899999999999876 5655433 688999999999999999999999999996 4666665
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHh---cCCchHHHHHHHHHHHHHhcCC
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
++.|+++|.. +++.-...+-.+|..+...+ -.+.+..++..+. +++ +.+++.++..|..-...-
T Consensus 98 --aDvL~QlL~t---dd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~d-e~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 98 --ADVLVQLLQT---DDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGD-EQVRERALKFLREKLKPL 164 (556)
T ss_dssp --HHHHHHHTT------HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS--HHHHHHHHHHHHHHGGGS
T ss_pred --HHHHHHHHhc---ccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCc-hHHHHHHHHHHHHHHhhC
Confidence 4568889953 66555555666666655321 1245566666665 443 678888887775332210
Q ss_pred CCCCccc-chhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcC
Q 002459 587 DSNSNNS-AVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (919)
Q Consensus 587 ~~~~~~~-~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 629 (919)
. .+... ..=.+.-++..+-..|.+-..+=-.....+|..+..
T Consensus 165 ~-~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 165 K-PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp --TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred c-HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 0 00000 000122233344455654333333445566666655
No 257
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.22 E-value=11 Score=41.10 Aligned_cols=276 Identities=17% Similarity=0.094 Sum_probs=138.2
Q ss_pred HHHHHHhhc-cCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCH-HHHHHHHHHHHHhhc
Q 002459 381 AGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WRE-GLQSEAAKAIANLSV 457 (919)
Q Consensus 381 i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~-~~~~~a~~~L~~l~~ 457 (919)
|..+++-+. +....+|..++--|+.-+ .+++.+..++..|.++.+++.+.. ++. .....++.+++-++.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~--------~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC--------ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh--------CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 345666665 344566766666666533 245678899999999999999954 333 333344444445555
Q ss_pred ChHHHHHHHHhCcHHHHHHHHhcC-CHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhc---c---CCCCHHHH
Q 002459 458 NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---W---SSGGDGVL 530 (919)
Q Consensus 458 ~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~---~---~~~~~~~~ 530 (919)
+...-..+-+.+.+..++++++-. ...+....- .....+-.++ ..+.+..+...+.. + .......+
T Consensus 95 d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 95 DGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred CCcchhhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccc
Confidence 554444444555566667777610 000000000 0000000111 01111212222211 0 01112233
Q ss_pred HHHHHHHHHhh---------------cCCcchHHHHhcChHHHHHHHHhc----CC------c-----hHHHHHHHHHHH
Q 002459 531 ERAAGALANLA---------------ADDKCSMEVALAGGVHALVMLARS----CK------F-----EGVQEQAARALA 580 (919)
Q Consensus 531 ~~a~~~L~~L~---------------~~~~~~~~l~~~g~i~~L~~ll~~----~~------~-----~~~~~~a~~~L~ 580 (919)
..|..++..++ ..+..++.+.+.|++..++..+.+ .+ . ......+.++|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 34444444442 112346677788999999998862 10 0 112346888888
Q ss_pred HHhcCCCCCCcccchhhcc--c-hHHHHHHHhC---CCCHHHHHHHHHHHHhhcCCc-ccHHHHHHcCCHHHHHHH---H
Q 002459 581 NLAAHGDSNSNNSAVGQEA--G-ALEALVQLTR---SPHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVVL---A 650 (919)
Q Consensus 581 ~L~~~~~~~~~~~~~~~~~--~-~i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~l---l 650 (919)
+.+... ..++..+... + .+..+..++. .........+++.+.|++-+. +....+...+....+..+ +
T Consensus 248 s~T~~~---~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~ 324 (361)
T PF07814_consen 248 SVTFLS---EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSF 324 (361)
T ss_pred HHHhcC---ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhh
Confidence 888763 4444444322 2 2222222222 223344677899999999884 445555554322222111 1
Q ss_pred hh--------cCCCCHHHHHHHHHHHHHcccC
Q 002459 651 QS--------CSNASPGLQERAAGALWGLSVS 674 (919)
Q Consensus 651 ~~--------~~~~~~~~~~~A~~~L~~l~~~ 674 (919)
.. .....-+...-+.++|.|++..
T Consensus 325 ~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 325 FCVLSLPNYVPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred cccccccccccccccchHHHHHHHhHHHheee
Confidence 11 0012345666788888888864
No 258
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.06 E-value=19 Score=39.42 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCChhHHHHhhc-HHHHHHhhcc---CCHHHHHHHHHHHHhhhccCCCCcccchhhHH
Q 002459 347 NEIMTWLEWILSHILLRTAESNPQGLDDFWLKQG-AGLLLSLMQS---TQEDVQERAATGLATFVVINDENASIDCGRAE 422 (919)
Q Consensus 347 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g-i~~Lv~lL~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 422 (919)
...++|+-+++.+.... .......+..+..... ...|-..++. --+.+-..|+..+..+...+... ..
T Consensus 74 ~~llK~lLk~l~~~~~~-~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~-------~~ 145 (379)
T PF06025_consen 74 QQLLKSLLKFLSHAMQH-SGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS-------FS 145 (379)
T ss_pred HHHHHHHHHHHHHHhcc-CCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch-------hH
Confidence 34444444444444442 2344444444333123 3445555543 33778889999999988776654 56
Q ss_pred HHHHcCCHHHHHHHHc-c---CCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc
Q 002459 423 AVMKDGGIRLLLDLAK-S---WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~-~---~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~ 480 (919)
.+.++|.++.+++.+. . ++.++-..--.++..++.|....+.+.+.+.++.+++++.+
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 7899999999999988 4 36677666777888899999999999999999999998865
No 259
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.88 E-value=22 Score=41.86 Aligned_cols=166 Identities=19% Similarity=0.069 Sum_probs=96.4
Q ss_pred CHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhc----CCcchHHHHhcChHHHHHHHHhc---CCchHHHHHHHHHHHHH
Q 002459 511 GVKALVDLIFKW-SSGGDGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARS---CKFEGVQEQAARALANL 582 (919)
Q Consensus 511 ~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~L~~----~~~~~~~l~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~~L 582 (919)
.+..+..++... ......+...+..+++.+.. +.+..........++.+...+.. ..+.+.+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 345566666532 22344566666666666653 22221122223356666665543 22345566788888888
Q ss_pred hcCCCCCCcccchhhccchHHHHHHHhC-C--CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHH
Q 002459 583 AAHGDSNSNNSAVGQEAGALEALVQLTR-S--PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPG 659 (919)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~Lv~lL~-~--~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~ 659 (919)
.. ...+..+..++. . .+..+|..|+++|..++..... .+-+.+++++.. ...+++
T Consensus 474 g~--------------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n-~~e~~E 531 (574)
T smart00638 474 GH--------------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLN-RAEPPE 531 (574)
T ss_pred CC--------------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcC-CCCChH
Confidence 75 245666776665 2 2567999999999988753221 134556677665 357889
Q ss_pred HHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc-cCCHHHHHHHHH
Q 002459 660 LQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR-SEAEDVHETAAG 707 (919)
Q Consensus 660 ~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~-~~~~~v~~~a~~ 707 (919)
+|.+|..+|...-.+.. .+..+...+. .++..|......
T Consensus 532 vRiaA~~~lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 532 VRMAAVLVLMETKPSVA---------LLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHHHHHHHhcCCCHH---------HHHHHHHHHhhcCcHHHHHHhHH
Confidence 99999988876533221 3445555554 344666555443
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.78 E-value=42 Score=39.89 Aligned_cols=258 Identities=15% Similarity=0.035 Sum_probs=150.7
Q ss_pred HHHHHHHHHhhhcCCC--ChhHHHHhhc-HHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCH
Q 002459 355 WILSHILLRTAESNPQ--GLDDFWLKQG-AGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430 (919)
Q Consensus 355 ~~~~~~l~~~~~~~~~--~~~~~~~~~g-i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l 430 (919)
|.++..+++-.+.-.. ..+. ..++ +..+...+ .++.|..-.++..++..++....-+ ++.... .+
T Consensus 424 wk~qea~l~a~~~~~~~~~~dd--~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~----~~~~~~-----fl 492 (1005)
T KOG2274|consen 424 WKIQEALLVAAESVRIDDANDD--KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN----PQLLQH-----FL 492 (1005)
T ss_pred HHHHHHHHHHHhhcccCcchHH--HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc----hhHHHH-----HH
Confidence 5666665555443222 2232 2222 22233333 4555666668888888766543322 111111 12
Q ss_pred HHHHHHHc-cCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 431 RLLLDLAK-SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 431 ~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
...+..+. +..+-++..|++++...+... ....+ ..+.++.|.++......++....+.+|...+..+.-.....+.
T Consensus 493 ~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s 570 (1005)
T KOG2274|consen 493 NATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES 570 (1005)
T ss_pred HHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc
Confidence 23344333 345667777888777765211 11111 1234677777777778888888999999999876555555566
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC---chHHHHHHHHHHHHHhcCC
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHG 586 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~ 586 (919)
...|..+.+... .++++-+...+-.++..++...++...+ .+..+|.++..+..+. ......-++..|..+....
T Consensus 571 kI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t 648 (1005)
T KOG2274|consen 571 KICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT 648 (1005)
T ss_pred chhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence 667777766655 5677777777777777777533322222 2346899999887543 2455566777777676654
Q ss_pred CCCCcccchhhccchHHHHHHH-hCCCCHHHHHHHHHHHHhhcCC
Q 002459 587 DSNSNNSAVGQEAGALEALVQL-TRSPHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~ 630 (919)
.+ + .-.. .-.-+++++.+. +++++.+....+..+|+.+-..
T Consensus 649 p~-p-L~~~-l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 649 PS-P-LPNL-LICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred CC-C-ccHH-HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 32 2 1112 224556777766 5777888888998988886544
No 261
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.77 E-value=12 Score=44.06 Aligned_cols=227 Identities=16% Similarity=0.054 Sum_probs=144.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH
Q 002459 524 SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (919)
Q Consensus 524 ~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~ 603 (919)
...+.+.-.+.+++...+...-....+.. -.+...+..+.-...+.++..|++++..-+.. ..... ..+++++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~--~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLS--LQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccc--cchHHHH
Confidence 35555555777777655543222111111 12334444444444467777888887766631 11111 1467888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHh
Q 002459 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (919)
Q Consensus 604 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~ 683 (919)
.|.++....+.++......+|+..+..+.......+....|..+.++.. .+.+|.+-..+-.++-.++....+..-+ .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g~m-~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYGPM-Q 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhcch-H
Confidence 8999888888888888888898877776665556666677777777644 3467777777777777776543333222 2
Q ss_pred cCChHHHHHHHccCC----HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCC
Q 002459 684 EGGVAPLIALARSEA----EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 684 ~g~v~~L~~lL~~~~----~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
.-.+|.|++.+..+. +.....++..|..+.. .|+--....-.-+.|++.+..-++++..+-..|-++|+.+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 347899999997765 5667777777776655 22223333445678888887766666778888999998776554
Q ss_pred C
Q 002459 759 M 759 (919)
Q Consensus 759 ~ 759 (919)
.
T Consensus 692 ~ 692 (1005)
T KOG2274|consen 692 L 692 (1005)
T ss_pred H
Confidence 3
No 262
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.44 E-value=0.21 Score=29.80 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=9.1
Q ss_pred CCCCEEEecCCCCCCHHHHHHH
Q 002459 179 PKLKKLRLSGIRDICGDAINAL 200 (919)
Q Consensus 179 ~~L~~L~L~~~~~~~~~~l~~l 200 (919)
++|++|+|++| .++++++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 44555555554 3555444444
No 263
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.04 E-value=1.1 Score=35.44 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcC
Q 002459 617 RQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREG 685 (919)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g 685 (919)
.+.|.+++.+++..+.....+.+.+.++.++++... .+...+|-.|..+|+-++...+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 467899999999988888888888999999999986 4778899999999999999988887776655
No 264
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.01 E-value=3.1 Score=50.18 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=107.8
Q ss_pred HHHHHHhh----ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc-cCCHHHHHHHHHHHHHh
Q 002459 381 AGLLLSLM----QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANL 455 (919)
Q Consensus 381 i~~Lv~lL----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~~l 455 (919)
.|.+++.+ ..++|++|..|.-+|+++..-+.+ .-+..+|.|+..+. ++++.+|.+++-+++.+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~------------fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE------------FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 58888888 357799999999999998754332 23356788999997 78999999999999998
Q ss_pred hc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 456 SV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 456 ~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
+. -+..-+ ---+.|.+.|.++++.+|+.|..+|.+|..+ ..|.-.|.+..+...+. ++++.+...|-
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~---D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLE---DPNAEISDLAK 1056 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhc---CCcHHHHHHHH
Confidence 85 221111 1245677888999999999999999999975 45556788899999995 48888888887
Q ss_pred HHHHHhhcCC
Q 002459 535 GALANLAADD 544 (919)
Q Consensus 535 ~~L~~L~~~~ 544 (919)
..+..|+.-.
T Consensus 1057 ~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1057 SFFKELSSKG 1066 (1251)
T ss_pred HHHHHhhhcc
Confidence 7777777533
No 265
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.95 E-value=0.24 Score=55.27 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred CccEEEecCCccchH-HHHHcCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCC
Q 002459 104 NLQKLRFRGAESADS-IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (919)
Q Consensus 104 ~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~ 182 (919)
+|+.|++++...... .....+++|+.|+++++. +++ +.......++|+.|++++ ..+.+- .........|+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~--l~~~~~~~~~L~~L~ls~---N~i~~l--~~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSD--LPKLLSNLSNLNNLDLSG---NKISDL--PPEIELLSALE 212 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhh--hhhhhhhhhhhhheeccC---CccccC--chhhhhhhhhh
Confidence 799999998877664 234478999999999987 443 222322678999999963 234332 11112344599
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH--HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEe
Q 002459 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (919)
Q Consensus 183 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l 260 (919)
+|.+++...+.. ......++++..|.+.++ .+.+ ..+..+++|+.|+++++ .+++... .....+|+.|++
T Consensus 213 ~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~ 284 (394)
T COG4886 213 ELDLSNNSIIEL---LSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDL 284 (394)
T ss_pred hhhhcCCcceec---chhhhhcccccccccCCc-eeeeccchhccccccceeccccc-ccccccc---ccccCccCEEec
Confidence 999998742211 112234477788887776 4444 67788999999999986 4544332 467789999999
Q ss_pred eccCCC
Q 002459 261 SRTDVG 266 (919)
Q Consensus 261 ~~~~i~ 266 (919)
+++.++
T Consensus 285 s~n~~~ 290 (394)
T COG4886 285 SGNSLS 290 (394)
T ss_pred cCcccc
Confidence 997543
No 266
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.77 E-value=1.4 Score=34.84 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhc
Q 002459 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAG 510 (919)
Q Consensus 445 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g 510 (919)
.+.|++++++++..+..-..+-+.+.++.++++..+ +...+|-.|..+|.-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 457999999999988888888888899999999864 678899999999999999988887776655
No 267
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.75 E-value=6.3 Score=41.80 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=111.2
Q ss_pred ChHHHHH-HHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC--
Q 002459 554 GGVHALV-MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-- 630 (919)
Q Consensus 554 g~i~~L~-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-- 630 (919)
+.+..++ ..+++.+ +.+++.+.++|+-.+.-+. . .....++.+.+.++.+++.++..|++++..+..-
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~------~--~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDK------E--LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCh------H--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3454554 5566665 8999999999998887521 1 1345577788888778999999999999986432
Q ss_pred cccHH-------HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc----CCH
Q 002459 631 DRNRE-------AIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS----EAE 699 (919)
Q Consensus 631 ~~~~~-------~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~----~~~ 699 (919)
.+.-. .......++.+...+.+ .+++++..|+..+++|-....... ....+..|+-+.-+ +++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~ 170 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDS---ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQ 170 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcH
Confidence 11111 11123456778888887 688999999999999875432211 12234444444322 346
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCC
Q 002459 700 DVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSG 739 (919)
Q Consensus 700 ~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~ 739 (919)
.++..-...+-..+.........+....+|.+..+.....
T Consensus 171 ~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 6777777777777775554455566677888877776654
No 268
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.52 E-value=5.4 Score=46.88 Aligned_cols=225 Identities=13% Similarity=0.037 Sum_probs=127.4
Q ss_pred cccccCCccccchhHHHHHHHHHHHHHHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCc
Q 002459 335 DWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENA 414 (919)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 414 (919)
.|..+.++.......+.|..+.+-. ++++...+.. ..|+.+|+. +++-..++.++.-+..++....
T Consensus 783 ~y~gs~dls~~al~~l~Wv~KaLl~------R~~~~s~~ia------~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~ 848 (1030)
T KOG1967|consen 783 NYCGSLDLSEIALTVLAWVTKALLL------RNHPESSEIA------EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLL 848 (1030)
T ss_pred hccCCcchhhHHHHHHHHHHHHHHH------cCCcccchHH------HHHHHhcCC--ccccchHHHhhHhhhccChHHh
Confidence 3444444444455555554432211 3444333331 467787765 2333445555555444333211
Q ss_pred cc--c----hhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHh--CcHHHHHHHHhcCCHHH
Q 002459 415 SI--D----CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEE--GGINILAVLARSMNRLV 485 (919)
Q Consensus 415 ~~--~----~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~ 485 (919)
.. + .-+++. .-...+|.+++...+.+...+..-+.+|.+.-. -|. ..+... .-+|.|++.|+-+|..+
T Consensus 849 ~r~~~a~~riLykQR-fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v 925 (1030)
T KOG1967|consen 849 KRKGHAEPRILYKQR-FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIV 925 (1030)
T ss_pred hhccccchhHHHHHH-HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccch
Confidence 11 0 112222 234678888888886667777777888888554 332 222222 22777888888899999
Q ss_pred HHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCC-CHHHHHHHHHHHHHhhc-CCcchHHHHhcChHHHHHHHH
Q 002459 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSG-GDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLA 563 (919)
Q Consensus 486 ~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~~~~~~~a~~~L~~L~~-~~~~~~~l~~~g~i~~L~~ll 563 (919)
+-.+..++.-+....+.-..---.-.+|.++.+=.+ ++. ...+++.|+.+|..|.. .+...-.-.....+..|.+.|
T Consensus 926 ~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 926 RVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred hhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc
Confidence 888888877766542221111112245555555443 222 26789999999999998 444433444455688888888
Q ss_pred hcCCchHHHHHHHHH
Q 002459 564 RSCKFEGVQEQAARA 578 (919)
Q Consensus 564 ~~~~~~~~~~~a~~~ 578 (919)
.++. .-++..|..+
T Consensus 1005 dDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 1005 DDKK-RLVRKEAVDT 1018 (1030)
T ss_pred CcHH-HHHHHHHHHH
Confidence 8775 6777777665
No 269
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=13 Score=40.73 Aligned_cols=157 Identities=16% Similarity=0.042 Sum_probs=92.8
Q ss_pred hcCHHHHHHHH-hccCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 509 AGGVKALVDLI-FKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 509 ~g~i~~L~~lL-~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
.|....++..+ .+..+++..++..|++.|.|.+.. ++-+... ..-.+..++.-|.+..+.+|+-.+..+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 34444444333 333456778999999999999986 2222211 12345666666666666889988888887776532
Q ss_pred CCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCc--ccHHHHHHc--CCHHHHHHHHhhcCCCCHHHHH
Q 002459 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAA--GGVEALVVLAQSCSNASPGLQE 662 (919)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~ 662 (919)
. +......+ -.+.-.+..+..+.++++|..|..++..|+... +.+..+.+. +...+++-.+++ .++.+ .
T Consensus 332 ~-~~~l~~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d---~~p~v-a 404 (533)
T KOG2032|consen 332 S-NDDLESYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD---PNPYV-A 404 (533)
T ss_pred h-hcchhhhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC---CChHH-H
Confidence 1 11111111 133445667788899999999988888877653 334444432 233444444554 55544 3
Q ss_pred HHHHHHHHccc
Q 002459 663 RAAGALWGLSV 673 (919)
Q Consensus 663 ~A~~~L~~l~~ 673 (919)
.|++.....+.
T Consensus 405 ~ACr~~~~~c~ 415 (533)
T KOG2032|consen 405 RACRSELRTCY 415 (533)
T ss_pred HHHHHHHHhcC
Confidence 56666665553
No 270
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.39 E-value=0.016 Score=53.12 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCC-CCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC
Q 002459 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN-VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (919)
Q Consensus 178 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~ 256 (919)
+.+|+.|++++. .+. .+..-.+.+|.|+.|+++-+.. +...+|+.+|-|+.||+++. +++...+..-+-.+..|+
T Consensus 55 l~nlevln~~nn-qie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhcccc-hhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHH
Confidence 456677777665 222 1222223447777777765422 23357778888888888764 455544433333445677
Q ss_pred EEEeeccC--CCHHHHHHHHhcCcccceecccccCCccch
Q 002459 257 GLDVSRTD--VGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (919)
Q Consensus 257 ~L~l~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 294 (919)
.|.++.++ +-+..+. .+++|+.|.+...+.++-.
T Consensus 131 alyl~dndfe~lp~dvg----~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 131 ALYLGDNDFEILPPDVG----KLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred HHHhcCCCcccCChhhh----hhcceeEEeeccCchhhCc
Confidence 77777764 2333333 4778888888888766543
No 271
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.30 E-value=0.46 Score=29.65 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=18.1
Q ss_pred CCCCEEEeeccCCCHHHHHHHHhc
Q 002459 253 PKLVGLDVSRTDVGPITISRLLTS 276 (919)
Q Consensus 253 ~~L~~L~l~~~~i~~~~l~~l~~~ 276 (919)
++|++|||++|.+++++...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 567888888888888887777553
No 272
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.19 E-value=2.6 Score=47.78 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=66.6
Q ss_pred HhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 377 ~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
.+.+|..++.++.+++..+|..|...|-.+|..+.+. ...++ ..|+++|.++++......-.+|..+-
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~-------v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH-------VSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--------HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH-------HhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999876654 33443 48999999998877777777777766
Q ss_pred c-ChHHHHHHHHhCcHHHHHHHHh---cCCHHHHHHHHHHHH
Q 002459 457 V-NAKVAKAVAEEGGINILAVLAR---SMNRLVAEEAAGGLW 494 (919)
Q Consensus 457 ~-~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~ 494 (919)
. ++ .+.+..+...+. +++..+|+.++..|.
T Consensus 125 ~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 125 KQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred hcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 5 54 234566666555 678889999988774
No 273
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=1.9 Score=47.43 Aligned_cols=90 Identities=23% Similarity=0.182 Sum_probs=69.7
Q ss_pred cCChHHHHHH-HccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchh
Q 002459 684 EGGVAPLIAL-ARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEF 762 (919)
Q Consensus 684 ~g~v~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~ 762 (919)
.|++..|++. ..+++.+|+++|+.||.-.|... ...++..+++|..++++.+|...+.+|+-.+.+..+.+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 3567777777 67888999999999999887543 35677788888888889999999999997777776655
Q ss_pred H--hhccccccccceechhHH
Q 002459 763 A--LIGTSTESTSKCVSLDGA 781 (919)
Q Consensus 763 ~--~~~~~~~~~~~~v~~~~~ 781 (919)
+ ++.++..+....|++.++
T Consensus 622 a~diL~~L~~D~~dfVRQ~Am 642 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAM 642 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHH
Confidence 4 666677787777777664
No 274
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.66 E-value=0.18 Score=56.59 Aligned_cols=88 Identities=19% Similarity=0.107 Sum_probs=44.9
Q ss_pred hhCCCCcEEEecCCCCCCH-HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCCHHHHHHHHhcCccc
Q 002459 202 KLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (919)
Q Consensus 202 ~~~~~L~~L~l~~~~~l~~-~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 280 (919)
..+++|+.|+++++ .|++ .++..++.|+.|+++++. +++.. . +..++.|+.++++++.+++-.-.. ...+.+|
T Consensus 115 ~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~-i~~~~--~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l 188 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNL-ISDIS--G-LESLKSLKLLDLSYNRIVDIENDE-LSELISL 188 (414)
T ss_pred hhhhcchheecccc-ccccccchhhccchhhheeccCc-chhcc--C-CccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence 34466666666665 3433 455566666666666642 22111 1 112556666666666543332211 2345666
Q ss_pred ceecccccCCccchh
Q 002459 281 KVLCALNCPVLEEEN 295 (919)
Q Consensus 281 ~~L~l~~c~~l~~~~ 295 (919)
+.+.+.++....-.+
T Consensus 189 ~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 189 EELDLGGNSIREIEG 203 (414)
T ss_pred HHHhccCCchhcccc
Confidence 666666666444333
No 275
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.65 E-value=2.6 Score=40.77 Aligned_cols=149 Identities=15% Similarity=0.011 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhc----CCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHH
Q 002459 530 LERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (919)
Q Consensus 530 ~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~L 605 (919)
.-.|+..|.-++..++.+..+.++...-.+..++.. ...+.++..++++++.|..++ ..+....+...+++|.+
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd--sq~vi~fLltTeivPLc 194 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND--SQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC--CHHHHHHHHhhhHHHHH
Confidence 446777778888899999988888765445555542 233556678999999999865 34556677789999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHc--------CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcch
Q 002459 606 VQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEAN 677 (919)
Q Consensus 606 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--------g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~ 677 (919)
+++++.+++--+.-|+.++..+-.++.+-+++.+. ..+..++.-+-+ .++..+...|.++-..++..+..
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs--~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS--LGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHheeecCCHhH
Confidence 99999998888888999998888777765555432 123333333333 26667777888888888877766
Q ss_pred hhHHH
Q 002459 678 CIAIG 682 (919)
Q Consensus 678 ~~~l~ 682 (919)
|..+.
T Consensus 273 R~lL~ 277 (315)
T COG5209 273 RALLS 277 (315)
T ss_pred HHHHh
Confidence 65443
No 276
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.15 E-value=0.29 Score=46.70 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=46.0
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH----HHHhCCCCCCEEeecCCCCCCHH-HH-HHHH
Q 002459 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWG-VV-SQVW 249 (919)
Q Consensus 176 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~~l~~~~~L~~L~l~~c~~i~~~-~l-~~l~ 249 (919)
.+.+.|.+|.|+.+ .++.-. ..+....|+|..|.+.+| ++.. +.+..||+|++|.+-+.+ +++. .. .++.
T Consensus 61 p~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl 136 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVL 136 (233)
T ss_pred CCccccceEEecCC-cceeec-cchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc-hhcccCceeEEE
Confidence 34567777777766 343211 123344577888888776 3333 345678888888777653 3221 11 1122
Q ss_pred hcCCCCCEEEeec
Q 002459 250 HKLPKLVGLDVSR 262 (919)
Q Consensus 250 ~~~~~L~~L~l~~ 262 (919)
..+|+|+.||...
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3456666666655
No 277
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=25 Score=38.64 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=82.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhhcC-hHHHHHHHHhCcHHHHHHHH-hcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCH
Q 002459 435 DLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (919)
Q Consensus 435 ~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i 512 (919)
.-.++++..++..|++.|++.+.. |+-....... .+..++.-| ...+.+|+..++.+|..+...-.+... +.+.+
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l--~~~~l 341 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL--ESYLL 341 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch--hhhch
Confidence 334457788899999999998873 4322222222 255555444 446788999999888888764322221 12223
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC--cchHHHHhc--ChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 513 KALVDLIFKWSSGGDGVLERAAGALANLAADD--KCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~--~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
+.-+++-.=+.+.+++++..+...+..|+.-. ..+..+.+. +...+++-.+.+++ +.+ ..|++.....+.
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYV-ARACRSELRTCY 415 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHH-HHHHHHHHHhcC
Confidence 32232222225688899999988888888633 333334331 23334444555554 444 455555555543
No 278
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.68 E-value=10 Score=43.69 Aligned_cols=216 Identities=13% Similarity=0.031 Sum_probs=123.5
Q ss_pred CCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHH
Q 002459 369 PQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEA 448 (919)
Q Consensus 369 ~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a 448 (919)
|..-..+|.....|.|++.+... ..+-...-.+..++.+.+. .......++.|...++..++ +..-
T Consensus 302 p~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~----------~~~~~~~~p~l~pi~~~~~~--~~~~ 367 (700)
T KOG2137|consen 302 PTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQ----------NEFGPKMLPALKPIYSASDP--KQAL 367 (700)
T ss_pred ccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccch----------hhhhhhhhHHHHHHhccCCc--ccch
Confidence 33444456666667777776321 2222222233333322221 13445667777777774222 2223
Q ss_pred HHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCH
Q 002459 449 AKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (919)
Q Consensus 449 ~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 527 (919)
+-++.++-. .......-++...++.|..-+++.+..+|+.++..+...+..=+ ...+..-.+|.+..+.. ...+.
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~--~tt~~ 443 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAF--KTTNL 443 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchh--cccch
Confidence 334444421 11111222234467788888899999999999999998887533 34444446777777744 46778
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHh---cCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH
Q 002459 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~ 604 (919)
.++..++.++..+. +.+-...+++.+..+++ .. ++.+.....++..++... ......+..+.++|.
T Consensus 444 ~vkvn~L~c~~~l~------q~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~----~~~g~ev~~~~VlPl 512 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLI------QRLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALI----IYSGVEVMAENVLPL 512 (700)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhh----cccceeeehhhhhhh
Confidence 89999999998888 22222334444444443 33 477777777777777763 222245556777887
Q ss_pred HHHHhCCCC
Q 002459 605 LVQLTRSPH 613 (919)
Q Consensus 605 Lv~lL~~~~ 613 (919)
++.+...+.
T Consensus 513 li~ls~~~~ 521 (700)
T KOG2137|consen 513 LIPLSVAPS 521 (700)
T ss_pred hhhhhhccc
Confidence 777765543
No 279
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.12 E-value=8 Score=45.57 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=95.7
Q ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHc--CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc
Q 002459 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAA--GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA 676 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~--g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~ 676 (919)
.+.+|.|+...++.+...+-.=..+|.++-.+-+- +.+... ...|.|++.|.- ++..+|..+..++--+.....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~---~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM---PDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC---CccchhhhHhhhhhHHHHhcc
Confidence 45678888888766667777777788776555332 222221 235666666654 788888888888766654321
Q ss_pred hhhHHHhcCChHHHHHHHccCC---HHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Q 002459 677 NCIAIGREGGVAPLIALARSEA---EDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 752 (919)
Q Consensus 677 ~~~~l~~~g~v~~L~~lL~~~~---~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~ 752 (919)
.-..---.-.++.++.+-.+.+ ..||..|++.|..|.. -|...-.-.+...+..|+..|.+.. ..+|..|+.+=.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHHhh
Confidence 1111111235666666666555 5699999999999988 5554444445566778888887664 678988877643
No 280
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=54 Score=40.28 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=120.1
Q ss_pred ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHH
Q 002459 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVA 466 (919)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~ 466 (919)
++.+..+|..+-+.|..++...... ....+..+ .....|.+-+++.....+..++.+|..+.. +.+....+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~-~~~~q~i~-----~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGE-GLVEQRID-----DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchh-hHHHHHHH-----HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4567889999999999988662211 00011111 122244444555555666667777766654 334444333
Q ss_pred HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc--C--cccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH--HHHHHh
Q 002459 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSV--G--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA--GALANL 540 (919)
Q Consensus 467 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~--~~L~~L 540 (919)
+ .|+-++-.++..|...++.|-.+|..++. . ++.-+. ....+...+..+... ...+..+..+. -++..+
T Consensus 738 k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isag-l~gd~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 738 K--LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAG-LVGDSTRVVASDIVAITHI 812 (1176)
T ss_pred H--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhh-hcccHHHHHHHHHHHHHHH
Confidence 2 24444444477888899999999988883 1 111000 111344555555421 11222332222 233333
Q ss_pred hcCCc-chHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHH
Q 002459 541 AADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQE 619 (919)
Q Consensus 541 ~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~ 619 (919)
..... ......-.+.+..+..++.+.+ +++...|.+.+.-++.. .++....-..+..++.+..+++.....++..
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~s-reI~kaAI~fikvlv~~---~pe~~l~~~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNS-REIAKAAIGFIKVLVYK---FPEECLSPHLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHc---CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 32211 1111111233444444555555 99999999999988864 2222222223447777888777777777777
Q ss_pred HHHHHHhhcC
Q 002459 620 AAGALWNLSF 629 (919)
Q Consensus 620 a~~~L~~Ls~ 629 (919)
+-..|-.|..
T Consensus 889 vr~LlekLir 898 (1176)
T KOG1248|consen 889 VRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHH
Confidence 7666655543
No 281
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=17 Score=42.72 Aligned_cols=179 Identities=13% Similarity=-0.010 Sum_probs=111.8
Q ss_pred HhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHH
Q 002459 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVH 557 (919)
Q Consensus 478 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~ 557 (919)
+.++-+.++.+++..|..+....+.+..+...+.+...+..+.+ .+.-+--+|...+..|+.- ..+..++
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd---edsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD---EDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc---cCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 34456678899999999999887777888888889999999964 6666777787777777732 2344677
Q ss_pred HHHHHHhcC-Cch--HHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc-
Q 002459 558 ALVMLARSC-KFE--GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN- 633 (919)
Q Consensus 558 ~L~~ll~~~-~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~- 633 (919)
.+...-.+. +.+ +.+-.+-.++.++...- .+-..+. ....+...+...++++...|..++..+++++.-...
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~--Gel~~~y--~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL--GELVFKY--KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHh--ccHHHHH--HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 777644332 211 33334445555554321 0000001 123455556666766777888888888888653221
Q ss_pred -HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC
Q 002459 634 -REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (919)
Q Consensus 634 -~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~ 674 (919)
...+.+ ....++.+.+. ++++-+|.+|+..+..+-.+
T Consensus 882 vsd~~~e--v~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 882 VSDFFHE--VLQLILSLETT--DGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhHHHHH--HHHHHHHHHcc--CCchhhHHHHHHHHHHHHhc
Confidence 112222 35556666665 47888999999988877653
No 282
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.24 E-value=42 Score=36.80 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=91.4
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHH-HHHhhcCCccc
Q 002459 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAG-ALWNLSFDDRN 633 (919)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~-~L~~Ls~~~~~ 633 (919)
.+..+++.+.+..++..+..|++.|..++.+. ..+..=-.+-++..+++.-.+.+.++...|.. ++..++...+.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q----~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ----PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc----hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 45667788887566888899999999999742 11111113345666666666666665555444 45556665443
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc-hhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHH
Q 002459 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA-NCIAIGREGGVAPLIALARSEAEDVHETAAGALWNL 712 (919)
Q Consensus 634 ~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l 712 (919)
+ .|..+..++.. .+...-..+...+..+...-. .--...-.+..|.+++...+.+..||..|+.+|..|
T Consensus 406 ~-------~I~~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 406 Q-------CIVNISPLILT---ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred h-------HHHHHhhHHhc---CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 3 24445555554 566666666667777665311 111112235778888999999999999999998887
Q ss_pred c
Q 002459 713 A 713 (919)
Q Consensus 713 ~ 713 (919)
.
T Consensus 476 v 476 (516)
T KOG2956|consen 476 V 476 (516)
T ss_pred H
Confidence 6
No 283
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.81 E-value=0.51 Score=49.81 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=61.2
Q ss_pred HhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHhhCCCCcEEEecCC--CCCCHHHH
Q 002459 147 VARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDC--LNVDEVAL 223 (919)
Q Consensus 147 ~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~--~~l~~~~l 223 (919)
.+..++|..|+|++ +-+.+- ..=......|+.|+++..+. .-.+++..+ ..||.+-.+++ ..+...++
T Consensus 431 l~~l~kLt~L~L~N---N~Ln~L--P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~l----q~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSN---NLLNDL--PEEMGSLVRLQTLNLSFNRFRMLPECLYEL----QTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred HHhhhcceeeeccc---chhhhc--chhhhhhhhhheecccccccccchHHHhhH----HHHHHHHhccccccccChHHh
Confidence 34566777777752 122221 11112244577777776521 111111111 22344434433 12344678
Q ss_pred hCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeeccCCC
Q 002459 224 GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (919)
Q Consensus 224 ~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~i~ 266 (919)
.++.+|..||+.+.. -..+..+.+++.+|++|++.+|.+.
T Consensus 502 ~nm~nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCc---hhhCChhhccccceeEEEecCCccC
Confidence 899999999998752 2445667789999999999998653
No 284
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.23 E-value=1.2e+02 Score=38.60 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc-CcccHH
Q 002459 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKG 504 (919)
Q Consensus 427 ~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~ 504 (919)
.+++..++..|..+...+|..|+++|..+.. ++..... ...-..+-.=+.+....||+.|+..++.-.. .++...
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 3667888999998999999999999999987 5543211 1111222233445678899999998885443 344433
Q ss_pred HHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC-chH-HHHHHHHHHHHH
Q 002459 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK-FEG-VQEQAARALANL 582 (919)
Q Consensus 505 ~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~-~~~~a~~~L~~L 582 (919)
++.+ .+..-+ .+....|+.++..+++.++...+.-..+ +...+++++.-+ .++ ++.-+..++.++
T Consensus 892 qyY~-----~i~erI---lDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 QYYD-----QIIERI---LDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHH-----HHHhhc---CCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3322 233333 3577889999999999999765543333 344555555322 234 788899999998
Q ss_pred hcCC
Q 002459 583 AAHG 586 (919)
Q Consensus 583 ~~~~ 586 (919)
-..+
T Consensus 959 WF~p 962 (1692)
T KOG1020|consen 959 WFTP 962 (1692)
T ss_pred hccC
Confidence 7764
No 285
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.22 E-value=0.079 Score=59.36 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=17.9
Q ss_pred CCEEEeeccCCCHHHHHHHHhcCcccceecccccC
Q 002459 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (919)
Q Consensus 255 L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 289 (919)
|+.++++++.+.... .-+..++++..+++.+..
T Consensus 234 L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP--EGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCcccccc--ccccccccccccchhhcc
Confidence 677777776554321 112235666666666554
No 286
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.85 E-value=68 Score=37.76 Aligned_cols=165 Identities=19% Similarity=0.066 Sum_probs=96.6
Q ss_pred hHHHHHHHHhcC---CchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhC----CCCHHHHHHHHHHHHhh
Q 002459 555 GVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR----SPHEGVRQEAAGALWNL 627 (919)
Q Consensus 555 ~i~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~----~~~~~~~~~a~~~L~~L 627 (919)
.+..+..++.++ ..+.+...|.-++..+....-.+............++.+...|. ..+.+.+..++++|.|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 466677777643 23556666777776665421101111001112345566665553 34556667788999998
Q ss_pred cCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-cchhhHHHhcCChHHHHHHHcc--CCHHHHHH
Q 002459 628 SFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS-EANCIAIGREGGVAPLIALARS--EAEDVHET 704 (919)
Q Consensus 628 s~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~-~~~~~~l~~~g~v~~L~~lL~~--~~~~v~~~ 704 (919)
... ..++.+...+......+..+|..|+++|.+++.. +.. .-+.|+.+..+ .++++|..
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 754 2455566666522336778999999999988743 222 34567777754 46788888
Q ss_pred HHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 705 AAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 705 a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
|..+|...- |. ...+..+.+.+....+.+++..
T Consensus 536 A~~~lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 536 AVLVLMETK--PS-------VALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHHhcC--CC-------HHHHHHHHHHHhhcCcHHHHHH
Confidence 887776632 22 1345567777776665555443
No 287
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=50 Score=36.98 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=85.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHh
Q 002459 604 ALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR 683 (919)
Q Consensus 604 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~ 683 (919)
.+-.++.+.++-+|...+-++.- +..... ..|++..|+..--+ .++.+++.+|+.+|+-++..+.+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~al-Ay~GTg-----n~~vv~~lLh~avs--D~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLAL-AYVGTG-----NLGVVSTLLHYAVS--DGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHH-HHhcCC-----cchhHhhhheeecc--cCchHHHHHHHHheeeeEecCcc------
Confidence 34456667777777765544432 111110 12456666666322 38889999999999998877654
Q ss_pred cCChHHHHHHH-ccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCC
Q 002459 684 EGGVAPLIALA-RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDG 757 (919)
Q Consensus 684 ~g~v~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~ 757 (919)
.+...+++| .+.++-||...+.+|.-.|.....+ -++..|-.++.+.+ .-+|+.|..+++-+...
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTN-DFVRQSAMIAVGMILMQ 651 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcH-HHHHHHHHHHHHHHHhh
Confidence 556666777 4567889988898998888765544 23455666666664 77999999888765443
No 288
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=83.68 E-value=5 Score=39.13 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=63.8
Q ss_pred hhHHHHHHcCCHHHHHHHHcc---------CCHHHHHHHHHHHHHhhcChHHHHHHHHh-CcHHHHHHHHhcCCHHHHHH
Q 002459 419 GRAEAVMKDGGIRLLLDLAKS---------WREGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEE 488 (919)
Q Consensus 419 ~~~~~i~~~g~l~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~ 488 (919)
.....+.+.||+..|++.|.. .+......++.++..+..+......+... +.+..|+..|.+++..++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 356678899999999998874 34577888999999999988877777765 56999999999999999999
Q ss_pred HHHHHHhhc
Q 002459 489 AAGGLWNLS 497 (919)
Q Consensus 489 a~~~L~~Ls 497 (919)
++.+|..++
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 289
>PF13013 F-box-like_2: F-box-like domain
Probab=82.33 E-value=1.3 Score=38.16 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=27.4
Q ss_pred CcCCCCHHHHHHHHcCCCHHHHHHHHhhcH
Q 002459 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCR 68 (919)
Q Consensus 39 ~~~~LP~eil~~If~~L~~~d~~~~~~vck 68 (919)
.+.+||+|++..||.+.+..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988888887
No 290
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.25 E-value=10 Score=43.28 Aligned_cols=103 Identities=20% Similarity=0.021 Sum_probs=76.0
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHH
Q 002459 642 GVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALR 721 (919)
Q Consensus 642 ~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 721 (919)
.+..+++-..+ .+..+|...+.+|..+.........-+-.+..+.+..-+.+..+.||..|+.+|..+-..+.+-
T Consensus 86 ~f~hlLRg~Es---kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 86 TFYHLLRGTES---KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHhcccC---cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 34445555554 8889999999999998874433334444556677777788889999999999999997543322
Q ss_pred HHHcCCHHHHHHHHhcCCCHHHHHHHHHHH
Q 002459 722 IVEEGGVPALVHLCSSSGSKMARFMAALAL 751 (919)
Q Consensus 722 l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L 751 (919)
+..++..+..++++++++++|..|...+
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 2356778999999999999998876554
No 291
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.16 E-value=78 Score=34.08 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=106.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHc--CCHHHHHHHHccC-----C--------HHHH
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD--GGIRLLLDLAKSW-----R--------EGLQ 445 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~--g~l~~Lv~lL~~~-----~--------~~~~ 445 (919)
+..+-+.|++..+.++..+...|..++.-+... ....+.+. --.+.+-+++... + +.+|
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~------~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGA------LAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHH------HHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 677788888888888888888998888633321 12222221 1223444454321 1 2788
Q ss_pred HHHHHHHHHhhc--ChHHHHHHHHhCc-HHHHHHHHhcCCHHHHHHHHHHHHh-hccCc----ccHHHHHHhcCHHHHHH
Q 002459 446 SEAAKAIANLSV--NAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWN-LSVGE----EHKGAIADAGGVKALVD 517 (919)
Q Consensus 446 ~~a~~~L~~l~~--~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~----~~~~~i~~~g~i~~L~~ 517 (919)
...+..+..+.. ++..+..+.+.+. +..+.+-|..+++++....+.+|.. +..++ ..+..+.....+..|..
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888887777544 7888888887766 7777787888889999999998884 55544 45666777778888888
Q ss_pred HHhccCCC--CHHHHHHHHHHHHHhhcCCc
Q 002459 518 LIFKWSSG--GDGVLERAAGALANLAADDK 545 (919)
Q Consensus 518 lL~~~~~~--~~~~~~~a~~~L~~L~~~~~ 545 (919)
+... ..+ ...+.+.+-..|..++.++.
T Consensus 212 Ly~~-~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSR-DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhcc-cCCcccchHHHHHHHHHHHHhcCCC
Confidence 5543 212 23788888889999887654
No 292
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.13 E-value=14 Score=35.97 Aligned_cols=109 Identities=17% Similarity=0.055 Sum_probs=74.5
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHH-hhc-ChHHHHHHHHhCcHHHHHHHHhc---------CCHHHHHHHHHHHHhh
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIAN-LSV-NAKVAKAVAEEGGINILAVLARS---------MNRLVAEEAAGGLWNL 496 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~-l~~-~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~~L 496 (919)
+..+.+++.+.+..... ..+.-|.- |-. ....-..|++.||+..|+.+|.. .+......++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34456777776654332 22222222 222 34567788899999999998853 3557888999999999
Q ss_pred ccCcccHHHHHH-hcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 497 SVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 497 s~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
..++.....+.. .+++..|+..+. +.+..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~---s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLD---SPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT-----TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
Confidence 998877777764 677888888884 588899999999988876
No 293
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=81.27 E-value=73 Score=33.15 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=134.6
Q ss_pred HHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHh--CcHHHHHHHHhc-C-CHHHHHHHHHHHHhhc
Q 002459 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEE--GGINILAVLARS-M-NRLVAEEAAGGLWNLS 497 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~--g~i~~Lv~lL~~-~-~~~~~~~a~~~L~~Ls 497 (919)
.+.++|.+..+++.+...+-+.+..++.+..++-. .-..|...++. .-.+.+-.+++. . .+++.-.+-..|....
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 57788999999999998888888888888877643 11111111111 112223333332 3 3667767777777777
Q ss_pred cCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc-chHHHHhcCh----HHHHHHHHhcCCchHHH
Q 002459 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGG----VHALVMLARSCKFEGVQ 572 (919)
Q Consensus 498 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~l~~~g~----i~~L~~ll~~~~~~~~~ 572 (919)
..+...+.+....-.......++- ++-++...|..+...+..... ...++..... .+.--.++.+++ --++
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~---p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N-yvtk 229 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQL---PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN-YVTK 229 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc-eehH
Confidence 777777777777777777777753 555677777777777664332 2333433322 222444556655 5667
Q ss_pred HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCc
Q 002459 573 EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDD 631 (919)
Q Consensus 573 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 631 (919)
..+...|..+-....+.....+.+.+...+..++.+|+.+...+|..|-...+-...++
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 78888888887754433334445556788999999999999999999999999887764
No 294
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.25 E-value=53 Score=36.06 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=89.5
Q ss_pred chHHHHHHHhCC-CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchh
Q 002459 600 GALEALVQLTRS-PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (919)
Q Consensus 600 ~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 678 (919)
..+..+++.|.. .++..+..|+++|..+..+...+-.=-..-++..+++.-.+ ..+..++.++-.++..++.....+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d--s~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD--SQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHhhCchh
Confidence 345566777766 67788999999999988764433221112245555555554 133334444444454555443221
Q ss_pred hHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCC--cccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 679 IAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFN--PGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 679 ~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.|..+..++.+.+.+.-..++..+..+... .+.-..++ ....|.+++-..+. +..+|..|+.+|..|.
T Consensus 407 -------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~-SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 -------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDST-SSTVRKTAVFCLVAMV 476 (516)
T ss_pred -------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc-hHHhhhhHHHhHHHHH
Confidence 345566666667777777777778877752 22222222 46789999988876 4789999999998764
No 295
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=55 Score=39.40 Aligned_cols=279 Identities=17% Similarity=0.163 Sum_probs=144.3
Q ss_pred HHHHHhhhcCCCChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc
Q 002459 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (919)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~ 438 (919)
.++..+..+|.+....|....|+..++.++- +++-+..-...+..|...+... +....+-.+++.|+
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkq-----------vhhqelmalVdtLk 730 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ-----------VHHQELMALVDTLK 730 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccc-----------ccHHHHHHHHHHHH
Confidence 4456667788888888888888877777772 2233333444444444333321 12233446778887
Q ss_pred cC--------CH----HHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 002459 439 SW--------RE----GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS----------MNRLVAEEAAGGLWN 495 (919)
Q Consensus 439 ~~--------~~----~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~ 495 (919)
++ +- .....-+.+++.+.. +...+..+.+.||...|...|.. .|..+...-...|..
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr 810 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR 810 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH
Confidence 73 11 123345556666655 77899999999998888877632 122222222222222
Q ss_pred hc-----cCcccHHHHHHhcCHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCc
Q 002459 496 LS-----VGEEHKGAIADAGGVKALVDLIFKWSSG--GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF 568 (919)
Q Consensus 496 Ls-----~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~ 568 (919)
+- .++.|+..+...=.-+.+..+|+. ++ -.+.-++....|..++ .+.++ .+.
T Consensus 811 lfTlavcenasNrmklhtvITsqtftsLLre--sgllcvnler~viqlllEla--------------levlv----ppf- 869 (2799)
T KOG1788|consen 811 LFTLAVCENASNRMKLHTVITSQTFTSLLRE--SGLLCVNLERHVIQLLLELA--------------LEVLV----PPF- 869 (2799)
T ss_pred HHHHHHhhcchhhhheeeeeeHHHHHHHHHH--hccceecchHHHHHHHHHHH--------------HHhhC----Cch-
Confidence 21 123333333322222333333321 00 0001111111111111 11111 110
Q ss_pred hHHHHHHHHHHHHHhcC--------CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHH
Q 002459 569 EGVQEQAARALANLAAH--------GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAA 639 (919)
Q Consensus 569 ~~~~~~a~~~L~~L~~~--------~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~ 639 (919)
-..-..|+..+-.+-.. +..+ ..+..+...+++..+++.+-...+..+..-+..+-.+++. +.+.+....
T Consensus 870 LtSEsaAcaeVfelednifavntPsGqfn-pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS 948 (2799)
T KOG1788|consen 870 LTSESAACAEVFELEDNIFAVNTPSGQFN-PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS 948 (2799)
T ss_pred hhhhHHHHHHHhhcccceeeeccCCCCcC-chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc
Confidence 00011222222222110 1111 2344556789999999988778888888888888888876 556777777
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 640 AGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 640 ~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
.|+++.|++++.+-.+++......|..++.-++
T Consensus 949 ~gcvellleIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 949 AGCVELLLEIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred ccHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence 799999998886533455555555555554444
No 296
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.39 E-value=1e+02 Score=34.40 Aligned_cols=298 Identities=15% Similarity=0.049 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc----C---CHHHHHHHHHHHHHhhc--ChHHH
Q 002459 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----W---REGLQSEAAKAIANLSV--NAKVA 462 (919)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~----~---~~~~~~~a~~~L~~l~~--~~~~~ 462 (919)
+.+.......+|.++.....+.. .........+...++.+.++.-. + ++.+-..+..++..+.. +.+..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~--~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q 133 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDK--QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ 133 (415)
T ss_pred ChHHHHHHHHHHHHHHHhccccc--ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH
Confidence 45566666777777654433321 01122333444567777666533 1 13444455555555544 44444
Q ss_pred HHHHHhCcHHHHHHHHh----------c------CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCC
Q 002459 463 KAVAEEGGINILAVLAR----------S------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (919)
Q Consensus 463 ~~i~~~g~i~~Lv~lL~----------~------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 526 (919)
+.+.+ .+..+.- . .......-...++..+-.+-... .....+..++.+..+ ..+
T Consensus 134 ~~~~~-----~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~--~~~ 203 (415)
T PF12460_consen 134 QEILD-----ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP---DLEELLQSLLNLALS--SED 203 (415)
T ss_pred HHHHH-----HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHc--CCC
Confidence 44432 2333221 0 11122222334444444432211 111245667777653 345
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHH----HHHHHHHHhcCCCCCCcccchhhccchH
Q 002459 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQ----AARALANLAAHGDSNSNNSAVGQEAGAL 602 (919)
Q Consensus 527 ~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~----a~~~L~~L~~~~~~~~~~~~~~~~~~~i 602 (919)
+..+..++..++.+..--.....+ ...+..+.....+......+.. ..|....|...++. .....+
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~--------~~~~~~ 273 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP--------LATELL 273 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc--------hHHHHH
Confidence 777777888777776421111100 1223333333311112233333 33444444443211 134567
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhcCC-ccc--------HHHHHHcC----CHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002459 603 EALVQLTRSPHEGVRQEAAGALWNLSFD-DRN--------REAIAAAG----GVEALVVLAQSCSNASPGLQERAAGALW 669 (919)
Q Consensus 603 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~--------~~~l~~~g----~i~~Lv~ll~~~~~~~~~~~~~A~~~L~ 669 (919)
..|+.++.+ +++...|++++.-+..+ ++. -+.+.++. .+|.|++..+. .+.+.+..-..+|.
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~---~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE---ADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh---cChhhHHHHHHHHH
Confidence 778888876 66778888888888776 221 22333333 45666666665 55568888888999
Q ss_pred HcccCcchhhHHHh-cCChHHHHHHHccCCHHHHHHHHHHHHHHcCCc
Q 002459 670 GLSVSEANCIAIGR-EGGVAPLIALARSEAEDVHETAAGALWNLAFNP 716 (919)
Q Consensus 670 ~l~~~~~~~~~l~~-~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 716 (919)
++..+-+..-.+.+ ...+|.|++-|..++++++..++.+|..+..+.
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88876443222222 246778888898899999999999999988644
No 297
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.89 E-value=4.8 Score=39.82 Aligned_cols=84 Identities=24% Similarity=0.133 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcccCcchhhHHHhcCCh-------HHHHHHHc-cCCHHHHHHHHHHHHHHcCCccc--HHHHHHcCCH
Q 002459 659 GLQERAAGALWGLSVSEANCIAIGREGGV-------APLIALAR-SEAEDVHETAAGALWNLAFNPGN--ALRIVEEGGV 728 (919)
Q Consensus 659 ~~~~~A~~~L~~l~~~~~~~~~l~~~g~v-------~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~--~~~l~~~~~i 728 (919)
.-|..|+.+|++++..+.|...+...+-. ..|++++. .+++-.|+.|+..|.+|+...+. +....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 46889999999999988887777765543 34555554 35678999999999999985443 3444578899
Q ss_pred HHHHHHHhcCCCHH
Q 002459 729 PALVHLCSSSGSKM 742 (919)
Q Consensus 729 ~~Lv~ll~~~~~~~ 742 (919)
..|+.++++.....
T Consensus 219 ~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 219 SHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998875333
No 298
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.60 E-value=1.5e+02 Score=35.88 Aligned_cols=234 Identities=11% Similarity=0.071 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHc------c--CCHHHHHHHHHHHHHhhc----ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 002459 427 DGGIRLLLDLAK------S--WREGLQSEAAKAIANLSV----NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494 (919)
Q Consensus 427 ~g~l~~Lv~lL~------~--~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 494 (919)
.|.++.+++.|. . .++.-+..|+.++++++. +...+..+ +.-.++-+.-.++++..-+|.+||+++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 466778888887 2 356667789999999874 22222222 2223445555667888889999999999
Q ss_pred hhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcch-HHHHhc--ChHHHHHHHHhcCCchH
Q 002459 495 NLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS-MEVALA--GGVHALVMLARSCKFEG 570 (919)
Q Consensus 495 ~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~l~~~--g~i~~L~~ll~~~~~~~ 570 (919)
..+.-+ .....+.+ ++......|.+ +..-.|+..|+-+|..+-.+.+.. ..+... +.++.|+.+.+.-+++
T Consensus 488 ~~~~~df~d~~~l~~--ale~t~~~l~~--d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End- 562 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSE--ALELTHNCLLN--DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND- 562 (1010)
T ss_pred HHHhccCCChHHHHH--HHHHHHHHhcc--CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh-
Confidence 999532 22222222 34555566652 566778999999999888765543 334332 5667777777765533
Q ss_pred HHHHHHHHH-HHHhcCCCCCCcccchhhccchHHHHHHHhCC------CCHHHHHHHHHHHHhhcCC---cccHHHHHH-
Q 002459 571 VQEQAARAL-ANLAAHGDSNSNNSAVGQEAGALEALVQLTRS------PHEGVRQEAAGALWNLSFD---DRNREAIAA- 639 (919)
Q Consensus 571 ~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~~---~~~~~~l~~- 639 (919)
....+...+ ...+.. -......+ .........+++.. .+.+-...|.++|..++.- -++...+.+
T Consensus 563 ~Lt~vme~iV~~fseE---lsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 563 DLTNVMEKIVCKFSEE---LSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred HHHHHHHHHHHHHHHh---hchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 233333222 122210 11111111 22333444455542 1233444566666655432 122222222
Q ss_pred --cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc
Q 002459 640 --AGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (919)
Q Consensus 640 --~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~ 673 (919)
...++.+-.+|+. .-.++-+.+..+..++..
T Consensus 639 le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKN---DITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhhh
Confidence 2344555555554 555666677777666653
No 299
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.12 E-value=25 Score=33.17 Aligned_cols=145 Identities=13% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCHHHHHHHHccC-CHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHH
Q 002459 428 GGIRLLLDLAKSW-REGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (919)
Q Consensus 428 g~l~~Lv~lL~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 505 (919)
..++.|+++|+++ +..+|..++++|+.|.. ||...+.+..... .-. -...+...... .+.+... ....+.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~---~l~~~~~-~~~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDI---SLPMMGI-SPSSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhh---HHhhccC-CCchHH
Confidence 3466788889875 68999999999999987 6643332221111 000 00011111111 1111111 112333
Q ss_pred HHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 002459 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (919)
Q Consensus 506 i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~ 583 (919)
..-..++..|++.|++ ..-..-+..++.++.++......+..-.=...+|.++..++..+ ...++....-|..|.
T Consensus 82 ~y~~vvi~~L~~iL~D--~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRD--PSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 4444467888888874 22233444666777776643322211111346888899999776 466666655555544
No 300
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=79.10 E-value=65 Score=36.99 Aligned_cols=164 Identities=16% Similarity=0.071 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHH
Q 002459 569 EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVV 648 (919)
Q Consensus 569 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ 648 (919)
.+.+..|+.+|+.+..+...+......-.....+..++..+. .++.-+..++++|.|+-.++.+++.+... ...+..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILD 634 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhh
Confidence 667778888888777764332221111112234445555554 45677788999999999887777766554 223322
Q ss_pred HHhhcC-CCCHHHHHHHHHHHHHcccC--cchhhHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHHcCCcccHH
Q 002459 649 LAQSCS-NASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALARSE-----AEDVHETAAGALWNLAFNPGNAL 720 (919)
Q Consensus 649 ll~~~~-~~~~~~~~~A~~~L~~l~~~--~~~~~~l~~~g~v~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~ 720 (919)
.+..+. ..+..++.+-+....|++.. ..+- +.++.+.+..++... +-+.....+.||.+|+..+....
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 222111 14456776666666666632 2221 145666666665432 23345667889999998888888
Q ss_pred HHHHcCCHHHHHHHHhcCC
Q 002459 721 RIVEEGGVPALVHLCSSSG 739 (919)
Q Consensus 721 ~l~~~~~i~~Lv~ll~~~~ 739 (919)
++.+.-.+..+.+-+++..
T Consensus 711 ~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHhcCHHHHHHHHHHhc
Confidence 8888888888888777643
No 301
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.09 E-value=9.2 Score=35.26 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=60.9
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~ 498 (919)
.++..|.+.|.+.++.++..|+..|..+.. .......|....-+..|++++.. .++.|+..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 445678888899999999999999999987 55688888888889999999987 789999999998888775
No 302
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.71 E-value=79 Score=32.04 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcCh
Q 002459 477 LARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (919)
Q Consensus 477 lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~ 555 (919)
+-+..+++.+...+.+|..++.++ .+...+ +..|..+... +.......+.+.+..+...++-.- +.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~---~~~~~~~~~~rLl~~lw~~~~r~f-----~~ 75 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQ---GSLELRYVALRLLTLLWKANDRHF-----PF 75 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcC---CchhHHHHHHHHHHHHHHhCchHH-----HH
Confidence 334578999999999999999986 444443 3334455532 333343344455555543322111 33
Q ss_pred HHHHHHHH--h-------cCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-CCCCHHHHHHHHHHHH
Q 002459 556 VHALVMLA--R-------SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQEAAGALW 625 (919)
Q Consensus 556 i~~L~~ll--~-------~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~ 625 (919)
++.++..+ + .....+.....+.+++.++... ++ .....++.+..+| +..++.++..++.+|.
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~---p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR---PD-----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC---hh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44444331 1 1112334445567788888752 22 3457788888889 7788888999999999
Q ss_pred hhc
Q 002459 626 NLS 628 (919)
Q Consensus 626 ~Ls 628 (919)
.++
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 888
No 303
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.28 E-value=48 Score=39.42 Aligned_cols=202 Identities=20% Similarity=0.076 Sum_probs=106.4
Q ss_pred CHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-cchHHHHhcChHHHHHHHHhcC---CchHHHHHHHHHHHHHhcCC
Q 002459 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSC---KFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~-~~~~~l~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~ 586 (919)
++..+.+++.. .. ..-..+...|..+.... ..-. ..+..+..++... +.+.+...|.-++..+....
T Consensus 396 av~~i~~~I~~---~~-~~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 396 AVKFIKDLIKS---KK-LTDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHT---T--S-HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CC-CCHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 45666667753 11 11223455555555432 2111 2345555555432 23566666766666665421
Q ss_pred CCCC------cccchhhccchHHHHHHHhC----CCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCC
Q 002459 587 DSNS------NNSAVGQEAGALEALVQLTR----SPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNA 656 (919)
Q Consensus 587 ~~~~------~~~~~~~~~~~i~~Lv~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~ 656 (919)
-... ...........++.+...+. ..+.+-+..++++|.|+... ..++.|...+......
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhcccc
Confidence 0010 01112223455666666554 45677888899999998643 3577777777762235
Q ss_pred CHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHH
Q 002459 657 SPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS--EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHL 734 (919)
Q Consensus 657 ~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~l 734 (919)
+..+|..|+.+|..++..... .+.+.|+.++.+ .++++|..|..+|... +|. ...+..+...
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~-------~~~l~~i~~~ 600 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPS-------PSVLQRIAQS 600 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCC-------HHHHHHHHHH
Confidence 788999999999988654221 134667778755 4578998888777662 222 2335567777
Q ss_pred HhcCCCHHHHHHH
Q 002459 735 CSSSGSKMARFMA 747 (919)
Q Consensus 735 l~~~~~~~~~~~A 747 (919)
+....+.++....
T Consensus 601 l~~E~~~QV~sfv 613 (618)
T PF01347_consen 601 LWNEPSNQVASFV 613 (618)
T ss_dssp HTT-S-HHHHHHH
T ss_pred HhhCchHHHHHHH
Confidence 7766656555443
No 304
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.11 E-value=3.8 Score=45.56 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=26.9
Q ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecCC
Q 002459 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (919)
Q Consensus 172 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 215 (919)
..+....|.+.+++|++++-..-+++..+.+..|+|+.|+|++|
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44445556666666666654455556666666666666666665
No 305
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.77 E-value=84 Score=31.85 Aligned_cols=180 Identities=18% Similarity=0.040 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHH
Q 002459 557 HALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREA 636 (919)
Q Consensus 557 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 636 (919)
+.|+.-+....++..+...+.+|..++.+++ ....-+++.|..+...+....+.-+.+.+..+-...+..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN--------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc--------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-
Confidence 4455545556668999999999999998631 1123456677777777777765666666666544322110
Q ss_pred HHHcCCHHHHHHH--Hh---h--cCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHH-ccCCHHHHHHHHHH
Q 002459 637 IAAAGGVEALVVL--AQ---S--CSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA-RSEAEDVHETAAGA 708 (919)
Q Consensus 637 l~~~g~i~~Lv~l--l~---~--~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL-~~~~~~v~~~a~~a 708 (919)
+.++.++.. ++ + ......+.....+..+..++...++ .-...++.+..+| ++.++.++..++.+
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 01 1 0113344444555667777755333 2223567788888 78888899999999
Q ss_pred HHHHcCCcccHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCC
Q 002459 709 LWNLAFNPGNALRIVE-EGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 709 L~~l~~~~~~~~~l~~-~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
|..++.. .+++ ......+..-+..+..|.+-..-+.....+..+.
T Consensus 146 l~~Lc~~-----~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~ 191 (234)
T PF12530_consen 146 LAPLCEA-----EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGA 191 (234)
T ss_pred HHHHHHH-----hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhcccc
Confidence 9999931 1221 1223344444444444554444334444444443
No 306
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.28 E-value=19 Score=43.92 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=104.8
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcc
Q 002459 471 INILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC 546 (919)
Q Consensus 471 i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~ 546 (919)
.|.+++..+. .+|+++..|.-+|+.+..-+ ..+++. ..+.|+..+. .++++.++-+++.+++-++-.-.+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces-~l~llftime--ksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCES-HLPLLFTIME--KSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHH-HHHHHHHHHh--cCCCceeeecchheccchhhhccc
Confidence 4555566643 58999999999999888632 223333 5788999998 368888999998888888754322
Q ss_pred hHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002459 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (919)
Q Consensus 547 ~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 626 (919)
-- +..-+.|...+++.+ +.++..|..+|.+|... . .+.-.|.+..+..++.+++++++.-|-..+..
T Consensus 995 li----e~~T~~Ly~rL~D~~-~~vRkta~lvlshLILn----d----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 995 LI----EPWTEHLYRRLRDES-PSVRKTALLVLSHLILN----D----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred cc----chhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHh----h----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 123566778888886 99999999999999984 3 34446889999999999999999988877777
Q ss_pred hcCC
Q 002459 627 LSFD 630 (919)
Q Consensus 627 Ls~~ 630 (919)
|+..
T Consensus 1062 ls~k 1065 (1251)
T KOG0414|consen 1062 LSSK 1065 (1251)
T ss_pred hhhc
Confidence 7754
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.79 E-value=96 Score=31.99 Aligned_cols=162 Identities=17% Similarity=0.023 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhccCc--------ccHHHHHHhcCHHHHHHHHhccCCCC----HHHHHHHHHHHHHhhcCCcchHHH
Q 002459 483 RLVAEEAAGGLWNLSVGE--------EHKGAIADAGGVKALVDLIFKWSSGG----DGVLERAAGALANLAADDKCSMEV 550 (919)
Q Consensus 483 ~~~~~~a~~~L~~Ls~~~--------~~~~~i~~~g~i~~L~~lL~~~~~~~----~~~~~~a~~~L~~L~~~~~~~~~l 550 (919)
+...+.+...|..+...+ +++-.+.-.+.+|.++.-+.+ ++ ......++..|..++.....
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~---~~~i~~~~~~~~~A~~La~~a~~~~~---- 148 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDD---PNPIQPDQECIEIAEALAQVAEAQGL---- 148 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcc---cccccccHHHHHHHHHHHHHHHhCCC----
Confidence 345566777777777633 234444444556666666643 33 23445667788888743221
Q ss_pred HhcChHHHHHHHHhcCC---chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 002459 551 ALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (919)
Q Consensus 551 ~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 627 (919)
..+..++.....+. ..+....++..|+.--. ++ .+...+..|+.+|.++.+.++.....+|..+
T Consensus 149 ---~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-----P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~l 215 (262)
T PF14225_consen 149 ---PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-----PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVL 215 (262)
T ss_pred ---ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-----ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 12333333332222 23333445555543221 10 1346778899999999999999999999998
Q ss_pred cCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 002459 628 SFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGL 671 (919)
Q Consensus 628 s~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l 671 (919)
-...+.+.. .....+.++.+++++ +.-..|..+|-+.
T Consensus 216 l~~~d~~~~-~~~dlispllrlL~t------~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 216 LPHVDMRSP-HGADLISPLLRLLQT------DLWMEALEVLDEI 252 (262)
T ss_pred hccccCCCC-cchHHHHHHHHHhCC------ccHHHHHHHHHHH
Confidence 776444333 333468999999986 3445566666543
No 308
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.52 E-value=9.5 Score=39.72 Aligned_cols=158 Identities=18% Similarity=0.091 Sum_probs=102.5
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcC--CHHHHHHHHhhcC-CCCHHHHHHHHHHHHHcccCcch
Q 002459 601 ALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVVLAQSCS-NASPGLQERAAGALWGLSVSEAN 677 (919)
Q Consensus 601 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g--~i~~Lv~ll~~~~-~~~~~~~~~A~~~L~~l~~~~~~ 677 (919)
....+...+...+++.+-.+...++-+..++..-..+...+ ....+..++.... ...+..+..++++++|+-.++..
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 44556666767666777888888888888877766655543 2455566555411 25788999999999999999888
Q ss_pred hhHHHhcC--ChHHHHHHHccC----CHHHHHHHHHHHHHHcCC-cccH-HHHHHcCCHHHHHH-HHhcCCCHHHHHHHH
Q 002459 678 CIAIGREG--GVAPLIALARSE----AEDVHETAAGALWNLAFN-PGNA-LRIVEEGGVPALVH-LCSSSGSKMARFMAA 748 (919)
Q Consensus 678 ~~~l~~~g--~v~~L~~lL~~~----~~~v~~~a~~aL~~l~~~-~~~~-~~l~~~~~i~~Lv~-ll~~~~~~~~~~~A~ 748 (919)
+..+.+.. .+...+..+.+. +..++..++..+.|++.. ...+ ..=.....+..+++ +.....++++...+.
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 88877653 344444444444 678999999999999751 1111 00001112345555 333335688999999
Q ss_pred HHHHHhhCCC
Q 002459 749 LALAYMFDGR 758 (919)
Q Consensus 749 ~~L~~l~~~~ 758 (919)
.|++++....
T Consensus 224 vAlGtL~~~~ 233 (268)
T PF08324_consen 224 VALGTLLSSS 233 (268)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhccC
Confidence 9999998544
No 309
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.33 E-value=1.3e+02 Score=34.12 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=55.8
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCC
Q 002459 685 GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 685 g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
|.+..+++-+.+++..|+..+++.|..+......-...+-.|.+..|..-+-+.. +.+|..|..+|+.+-...
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhcc
Confidence 3445566666788899999999999999876655555666677777877777664 889999999999876443
No 310
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=76.13 E-value=5 Score=39.72 Aligned_cols=83 Identities=22% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHcC-------CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcc--hhhHHHhcC
Q 002459 615 GVRQEAAGALWNLSFDDRNREAIAAAG-------GVEALVVLAQSCSNASPGLQERAAGALWGLSVSEA--NCIAIGREG 685 (919)
Q Consensus 615 ~~~~~a~~~L~~Ls~~~~~~~~l~~~g-------~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~--~~~~l~~~g 685 (919)
.-|..|+.+|+.|+..+.|-..+...+ .+..|++++.. +.++..||.|.-.|.+++..++ .+..-.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 457889999999999887776666554 34556666654 5889999999999999998643 334445779
Q ss_pred ChHHHHHHHccCCH
Q 002459 686 GVAPLIALARSEAE 699 (919)
Q Consensus 686 ~v~~L~~lL~~~~~ 699 (919)
+|..|+.++.+...
T Consensus 217 ~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 217 CISHLIAFIEDAEQ 230 (257)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999976544
No 311
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.62 E-value=14 Score=33.77 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhc------CCHHHHHHHHHHHHhhcc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS------MNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~ 498 (919)
.++..|.+.|.++++.++..|+..|-.+.. .+.....|+..+-+..|++++.. .+..|+...+..+..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999987 56788888888889999999953 478899998888777665
No 312
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.01 E-value=0.79 Score=41.45 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=14.1
Q ss_pred hCCCCcEEEecCC-CCCCHHHHhCCCCCCEEeec
Q 002459 203 LCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVA 235 (919)
Q Consensus 203 ~~~~L~~L~l~~~-~~l~~~~l~~~~~L~~L~l~ 235 (919)
.|++|+.+.+.+. ..+.+..+..+++|+.+++.
T Consensus 56 ~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 56 NCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccccccccccccccccccccccccccC
Confidence 4455666666432 12333444555666666654
No 313
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.98 E-value=79 Score=36.34 Aligned_cols=185 Identities=15% Similarity=0.049 Sum_probs=106.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHH
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAK 463 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 463 (919)
.+.++..-.++.+--|...|..++....-+ .........+..+..++..+. .++..+..++++|.|+..++..++
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~----s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~ 623 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSN----SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRE 623 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchh----hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHH
Confidence 334444455677777888888776543322 111111223345666666666 668888999999999999888777
Q ss_pred HHHHhC--cHHHHHHHHhcCCHHHHHHHHHHHHhhccC--cccHHHHHHhcCHHHHHHHHhccC--CCCHHHHHHHHHHH
Q 002459 464 AVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWS--SGGDGVLERAAGAL 537 (919)
Q Consensus 464 ~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~~~~a~~~L 537 (919)
-+...- .+..+.+.-..++..++...+....|.+.. ..+- +.++.+.+...+.... ..+-+.....+.+|
T Consensus 624 ~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al 699 (745)
T KOG0301|consen 624 LFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVAL 699 (745)
T ss_pred HHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 776541 122222222224455655555555555541 1111 1345555555443311 12223445667788
Q ss_pred HHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHH
Q 002459 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAAR 577 (919)
Q Consensus 538 ~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~ 577 (919)
.+|+..+....+++..-.+..+...+++....+.....++
T Consensus 700 gtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 700 GTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred HhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 8998888888888888778888887775543443344443
No 314
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.10 E-value=18 Score=35.26 Aligned_cols=143 Identities=16% Similarity=0.060 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC-----CCHHHHHHHHHHHHhhcCCccc--HHHHHHcCCHHH
Q 002459 573 EQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS-----PHEGVRQEAAGALWNLSFDDRN--REAIAAAGGVEA 645 (919)
Q Consensus 573 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~--~~~l~~~g~i~~ 645 (919)
.+|+..|..++++ ++.+..+.+...--.+..+|.. ..+.+|..+++++..|..+++. ...+.....+|.
T Consensus 118 cnaL~lLQclaSh----Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 118 CNALNLLQCLASH----PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred HHHHHHHHHHhcC----cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 4677778888885 5567777776655555555533 2456788899999999888544 556667788999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHH----hcCChHH----HHH-HHccCCHHHHHHHHHHHHHHcCCc
Q 002459 646 LVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG----REGGVAP----LIA-LARSEAEDVHETAAGALWNLAFNP 716 (919)
Q Consensus 646 Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~----~~g~v~~----L~~-lL~~~~~~v~~~a~~aL~~l~~~~ 716 (919)
+++++.. +++--+..|+.++..+-.++..-+.+. +..++.. ++. +...+...+...++.+-.+|+..|
T Consensus 194 cLrIme~---gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 194 CLRIMEL---GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHHh---hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 9999987 888888899999988877665433332 2223322 222 223445566667777777777666
Q ss_pred ccHHHH
Q 002459 717 GNALRI 722 (919)
Q Consensus 717 ~~~~~l 722 (919)
..|..+
T Consensus 271 ~aR~lL 276 (315)
T COG5209 271 HARALL 276 (315)
T ss_pred hHHHHH
Confidence 655433
No 315
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.09 E-value=16 Score=33.69 Aligned_cols=71 Identities=17% Similarity=0.055 Sum_probs=60.1
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hHHHHHHHHhCcHHHHHHHHh-cCCHHHHHHHHHHHHhhcc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~ 498 (919)
.++..|.+.|.++++.++..|+..|..+..+ ......+...+-++.|++++. ..++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4466788888999999999999999999874 668888888888999999987 4688899999988888775
No 316
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=73.86 E-value=57 Score=33.85 Aligned_cols=176 Identities=18% Similarity=0.060 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhccCcccHHHHHHhc--CHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCcchHHHHhcC--hHHHHH
Q 002459 486 AEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVALAG--GVHALV 560 (919)
Q Consensus 486 ~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g--~i~~L~ 560 (919)
+--++-.+.-+..++.....+...+ ....+..++... ....+..+..+++++.|+-.++..+..+.+.. .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 4445555555555555544444332 244555555431 23567888889999999999999988887753 344444
Q ss_pred HHHhcCC---chHHHHHHHHHHHHHhcCCCCCCccc-chhhccchHHHHHHHhCC--CCHHHHHHHHHHHHhhcCCcccH
Q 002459 561 MLARSCK---FEGVQEQAARALANLAAHGDSNSNNS-AVGQEAGALEALVQLTRS--PHEGVRQEAAGALWNLSFDDRNR 634 (919)
Q Consensus 561 ~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~ 634 (919)
..+.... +..++..++..+.|++.... ..+ ..-.....+..+++.+.. .+++....++-+|+++...++..
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~---~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLH---KNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHH---HCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence 3333332 47888899999999976311 111 010122345666664322 58899999999999998766555
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 002459 635 EAIAAAGGVEALVVLAQSCSNASPGLQERAA 665 (919)
Q Consensus 635 ~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~ 665 (919)
....+.-++...+.-... ...++.+++.+.
T Consensus 237 ~~~~~~l~~~~~~~~~~~-~~~e~ri~~v~~ 266 (268)
T PF08324_consen 237 KQLAKSLDVKSVLSKKAN-KSKEPRIKEVAA 266 (268)
T ss_dssp HHHCCCCTHHHHHHHHHH-HTTSHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHh-cccchHHHHHhc
Confidence 555443223333222221 125666666543
No 317
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.85 E-value=95 Score=32.07 Aligned_cols=141 Identities=12% Similarity=0.010 Sum_probs=69.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhc--CCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 433 LLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
|=..|.++++.+|..|+..|..+.. -+... ....-+..|+++..+ .|......++.++..|..........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 4456778889999999888888543 22110 112235666666544 45555555566666666433211111
Q ss_pred cCHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhcCCcchHHHHh--cChHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 002459 510 GGVKALVDLIFK---WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLA 583 (919)
Q Consensus 510 g~i~~L~~lL~~---~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~ 583 (919)
...+++.+.+ ..+-....|..+...+..+..+. ...+.+ .+.+..+++.+....||.-...+...+..+.
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2222222221 01223345555666666655332 122222 2345666666665555554444444444443
No 318
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=73.74 E-value=1.4e+02 Score=32.35 Aligned_cols=155 Identities=13% Similarity=0.012 Sum_probs=87.0
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHh--c--------CCHHHHHHHHHHHHhhccCc
Q 002459 432 LLLDLAKSWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR--S--------MNRLVAEEAAGGLWNLSVGE 500 (919)
Q Consensus 432 ~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~--~--------~~~~~~~~a~~~L~~Ls~~~ 500 (919)
.+.+.|..+. ...+..++.++.-|+.+...-.-+....-.+.|+.+-+ + .+..+...+.++|.|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 5666666654 45566777777777765443322222222344444331 1 35578889999999999975
Q ss_pred -ccHHHHHHhcCHHHHHHHHhccCC--CCHHHHHHHHHHHHHhhc-CCcch-HHHHhcChHHHHHHHHhcCC--------
Q 002459 501 -EHKGAIADAGGVKALVDLIFKWSS--GGDGVLERAAGALANLAA-DDKCS-MEVALAGGVHALVMLARSCK-------- 567 (919)
Q Consensus 501 -~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~~~a~~~L~~L~~-~~~~~-~~l~~~g~i~~L~~ll~~~~-------- 567 (919)
..+....+......+++.+..... ...++...-++.|.-+.. .++.+ +.+++.++++.+-+.+.+.-
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 566666777666666665532111 111222223333333332 23444 44566788999988887421
Q ss_pred ch------HHHHHHHHHHHHHhcCC
Q 002459 568 FE------GVQEQAARALANLAAHG 586 (919)
Q Consensus 568 ~~------~~~~~a~~~L~~L~~~~ 586 (919)
++ +....++.++.|++.+.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeecc
Confidence 01 12235677777887754
No 319
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.24 E-value=18 Score=32.93 Aligned_cols=72 Identities=18% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhc---CCHHHHHHHHHHHHhhccC
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~ 499 (919)
.++..|.+.|+++++.++..|+.+|-.+.. .+.....+.....+..|++++.. .++.++..++..+.+.+..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345678888899999999999999999987 44577888877778889999875 4888999999988887763
No 320
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.09 E-value=1.8 Score=49.67 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=39.5
Q ss_pred ccCcCCCCHHHHHHHHcCCCHHHHHHHHhhcHhHHHHhcCCCCc
Q 002459 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80 (919)
Q Consensus 37 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vck~w~~l~~~~~lw 80 (919)
.+-+..||.|+...||++|+.++++.+++||+.|+.+..+...|
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 46789999999999999999999999999999999997765554
No 321
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.06 E-value=5.8 Score=24.69 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=11.2
Q ss_pred CCCEEEecCCCCCCHHHHHHHHh
Q 002459 180 KLKKLRLSGIRDICGDAINALAK 202 (919)
Q Consensus 180 ~L~~L~L~~~~~~~~~~l~~l~~ 202 (919)
+|++|+|+++ .+++++...+.+
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHHH
Confidence 4555555555 455555554443
No 322
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.04 E-value=1.8e+02 Score=33.03 Aligned_cols=111 Identities=22% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHH
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI 506 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 506 (919)
|.+..+++-+.+.+..+|..++.+|+-++.. .+.-+ ..-.|-+..|.+-+-+..+.+|..|+.+|...-..+.+-+..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 6677888888999999999999999988762 22222 233444555555555567889999999988776644333322
Q ss_pred HHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchH
Q 002459 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (919)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 548 (919)
....|+.+++ .+++.++++.| |.|+.-++....
T Consensus 170 ----~~n~l~~~vq--nDPS~EVRr~a---llni~vdnsT~p 202 (885)
T COG5218 170 ----IVNLLKDIVQ--NDPSDEVRRLA---LLNISVDNSTYP 202 (885)
T ss_pred ----HHHHHHHHHh--cCcHHHHHHHH---HHHeeeCCCcch
Confidence 2346777777 35777787655 566665555443
No 323
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.74 E-value=12 Score=31.44 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=54.4
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCc
Q 002459 687 VAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMD 760 (919)
Q Consensus 687 v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~ 760 (919)
.+..+..+.++.+.+|..++..|.+|..... ....-..+.+..+...+++++ +-+-..|+.+|..|+.-.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 3456677888889999999999999987555 222223456777778888775 67899999999998876654
No 324
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.51 E-value=36 Score=28.92 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=56.0
Q ss_pred HcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 002459 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494 (919)
Q Consensus 426 ~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 494 (919)
..+.+..|++....++...+..++..+..+...+.....+.+.|+.+.|-++-..-++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 556777888888888777888999999999999999999999999999777766667777666655544
No 325
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=2.7e+02 Score=34.71 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHhc--ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccch
Q 002459 524 SGGDGVLERAAGALANLAADDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601 (919)
Q Consensus 524 ~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~ 601 (919)
+.+..++..+-.+|..++..+.+.....+. .....|..-+++.. ...+...+.+|..|-.... . +.. .+. ...
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~-~-e~~-~~i-~k~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLS-A-EHC-DLI-PKL 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhcc-H-HHH-HHH-HHH
Confidence 457889999999999999885554333222 23445555555554 5667777777776665321 0 111 111 233
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhcC-----Ccc-cH-HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH--HHHHHcc
Q 002459 602 LEALVQLTRSPHEGVRQEAAGALWNLSF-----DDR-NR-EAIAAAGGVEALVVLAQSCSNASPGLQERAA--GALWGLS 672 (919)
Q Consensus 602 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-----~~~-~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~--~~L~~l~ 672 (919)
|+.++-.++..+...|..|..+|..++. ++. .+ .. .+..++..+.... .....+..|. -++..+.
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-----~lnefl~~Isagl-~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASA-----ILNEFLSIISAGL-VGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHH-----HHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHH
Confidence 3444434466788889999988888872 111 11 11 3445555554311 1223333333 3333333
Q ss_pred cCcchhhHHHhcC----ChHHHHHHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Q 002459 673 VSEANCIAIGREG----GVAPLIALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGGVPALVHLCSSSGSKMARFMA 747 (919)
Q Consensus 673 ~~~~~~~~l~~~g----~v~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A 747 (919)
.. ...+.+.+ .+..+.-.|.+++++++..|++.+..++. .|+....-..+..+|.+..+++... ..+|.+.
T Consensus 814 ~e---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kv 889 (1176)
T KOG1248|consen 814 QE---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKV 889 (1176)
T ss_pred HH---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHH
Confidence 21 11122222 34445555678899999999999999976 4544433333456777777776553 5566666
Q ss_pred HHHHHHhh
Q 002459 748 ALALAYMF 755 (919)
Q Consensus 748 ~~~L~~l~ 755 (919)
-..+-.|.
T Consensus 890 r~LlekLi 897 (1176)
T KOG1248|consen 890 RLLLEKLI 897 (1176)
T ss_pred HHHHHHHH
Confidence 66555443
No 326
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=71.46 E-value=47 Score=31.31 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=78.1
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHH
Q 002459 471 INILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (919)
Q Consensus 471 i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 549 (919)
++.|+++|+.+ +..+|..++++|+.|..-++.+.+..+.+.-. .-. ...+...... .+.+... ....++
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~----~~~--~~~~~~~~~~---~l~~~~~-~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDS----KSS--ENSNDESTDI---SLPMMGI-SPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCc----ccc--ccccccchhh---HHhhccC-CCchHH
Confidence 56677778764 68999999999999998666555533221110 000 0001111111 1111111 112233
Q ss_pred HHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 002459 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNL 627 (919)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 627 (919)
..-.-++..|+..+++++-..-...+..++.++-.. ...+..--=..+++.++..+++.+...++....-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~----l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS----LGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----cCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333446788888888776445555677777776642 11111222356788888888877767777655555444
No 327
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=71.39 E-value=78 Score=32.67 Aligned_cols=222 Identities=13% Similarity=-0.011 Sum_probs=116.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 002459 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA 553 (919)
Q Consensus 474 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~ 553 (919)
|=..|.++++.+|..|+..|..+...-+. ......-+..|+.+..+ .-.+......++..+..|.......... ..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~--~~L~~~ev~~L~~F~~~-rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP--DFLSRQEVQVLLDFFCS-RLDDHACVQPALKGLLALVKMKNFSPES-AV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH--hhccHHHHHHHHHHHHH-HhccHhhHHHHHHHHHHHHhCcCCChhh-HH
Confidence 44556788999999999988887764221 11222235667766654 2345555555677776666433321111 11
Q ss_pred ChHHHHHHHHhc-CCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC-CHHHHHHHHHHHHhhcCCc
Q 002459 554 GGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP-HEGVRQEAAGALWNLSFDD 631 (919)
Q Consensus 554 g~i~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~ 631 (919)
..+..+.+-..- .-....+..+...|..+..... ... .-...+.+..+++.+..+ ||.-...+...+..+...-
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l--~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EAL--QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHH--HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 112222221110 1124456677777777765310 011 112456777788887664 7777777777766665442
Q ss_pred ccHHHHHHcCCHHHHHHHHh-------hcCCCCH--HHHHHHHHHHHHc-ccCcchhhHHHhcCChHHHHHHHccCCHHH
Q 002459 632 RNREAIAAAGGVEALVVLAQ-------SCSNASP--GLQERAAGALWGL-SVSEANCIAIGREGGVAPLIALARSEAEDV 701 (919)
Q Consensus 632 ~~~~~l~~~g~i~~Lv~ll~-------~~~~~~~--~~~~~A~~~L~~l-~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v 701 (919)
+. ....+.+.+.+. ..+.+++ -.++.-..+|.+. +.++. ...-+++.|+.=|.++.+.+
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPSV 224 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcHH
Confidence 21 112222333221 1111222 1222222222222 22221 22347888999999999999
Q ss_pred HHHHHHHHHHHcC
Q 002459 702 HETAAGALWNLAF 714 (919)
Q Consensus 702 ~~~a~~aL~~l~~ 714 (919)
+..++.+|..++.
T Consensus 225 K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 225 KLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 328
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=70.87 E-value=3.1 Score=22.42 Aligned_cols=10 Identities=30% Similarity=0.179 Sum_probs=3.5
Q ss_pred cceecccccC
Q 002459 280 LKVLCALNCP 289 (919)
Q Consensus 280 L~~L~l~~c~ 289 (919)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444443
No 329
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.04 E-value=18 Score=33.29 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 457 (919)
++..|.+-|++.++.++..|...|..+...++.. ....+.....+..|++++.. .++.++..++..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999877643 45677888999999999988 789999999999998764
No 330
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.65 E-value=22 Score=33.76 Aligned_cols=107 Identities=18% Similarity=0.053 Sum_probs=67.5
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCc--HHHHHHHHhcC-CHHHHHHHHHHHHhhccC----cc
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSM-NRLVAEEAAGGLWNLSVG----EE 501 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~--i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~----~~ 501 (919)
.+..+.++|++.++..|..++..+........ .+.+.+.++ +..++.+|+.+ .+.+.+.++.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34468888999999999988888888775322 355555555 88899999874 566788888888877763 34
Q ss_pred cHHHHHHhc---CHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 002459 502 HKGAIADAG---GVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (919)
Q Consensus 502 ~~~~i~~~g---~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~ 541 (919)
..+.+.... .++.++.+++ +......++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHH
Confidence 444443322 2344444442 1344455555555544
No 331
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=68.28 E-value=25 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhcC--CHHHHHHHHHHHHhhcc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~ 498 (919)
.++..|.+.|+++++.++..|+..|..+.. .+.....+...+.+..|+.+++.. .+.|+..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 345567788889999999999999999987 467888888888899999998763 34488888888877765
No 332
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.06 E-value=4.7 Score=36.66 Aligned_cols=29 Identities=34% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 002459 471 INILAVLARSMNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 499 (919)
|++|+.+|.+.+..+...|+.+|.+-.--
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 99999999988999999999999886653
No 333
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.39 E-value=1.1e+02 Score=35.39 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=99.2
Q ss_pred HHHHHhhcc----CCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhh
Q 002459 382 GLLLSLMQS----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLS 456 (919)
Q Consensus 382 ~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~~l~ 456 (919)
|...+.... .|+++|..|.-+|.+|-.-..+ .-..-+|.++..+. +++|.+|..|+-.|+.+.
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~------------fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~ 962 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE------------FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFL 962 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHhhCCCcceeccceeeccccc
Confidence 555666643 7899999999999987644332 11245788888887 799999999999999875
Q ss_pred c--ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHH
Q 002459 457 V--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (919)
Q Consensus 457 ~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~ 534 (919)
. +.-. +. .-..|.+-|.+.+..|++.+..++..|.-. .++--.|-.+.+...|. +++..+.+.|-
T Consensus 963 vcfN~~~-----de-~t~yLyrrL~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~---deda~Isdmar 1029 (1128)
T COG5098 963 VCFNTTA-----DE-HTHYLYRRLGDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLT---DEDAEISDMAR 1029 (1128)
T ss_pred eehhhhh-----HH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhcc---CCcchHHHHHH
Confidence 4 3211 11 234556666778999999999999988753 22333466778888885 48888888888
Q ss_pred HHHHHhhcCCc
Q 002459 535 GALANLAADDK 545 (919)
Q Consensus 535 ~~L~~L~~~~~ 545 (919)
..+..++.-+.
T Consensus 1030 ~fft~~a~KdN 1040 (1128)
T COG5098 1030 HFFTQIAKKDN 1040 (1128)
T ss_pred HHHHHHHhccc
Confidence 88888886544
No 334
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=67.02 E-value=2.3e+02 Score=32.22 Aligned_cols=252 Identities=12% Similarity=0.002 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHHhhcChHHHHHHHHhCcH-HHHHHHHh-cCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHH
Q 002459 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGI-NILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL 518 (919)
Q Consensus 441 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i-~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~l 518 (919)
..+.|..+...|..+....+.+ .++. ..+.+.+. ...++.-..-+.+|..|+.+-..- ...+.+..+.|...
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~-----~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSS-----SGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccc-----cHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 5678888888888887633221 1111 11222333 234444445566777777753222 22466667777766
Q ss_pred HhccC------------------------CCCHHHHHHHHHHHHHhhcCCcc-hHHHHhcChHHHHHHHHhcCCchHHHH
Q 002459 519 IFKWS------------------------SGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQE 573 (919)
Q Consensus 519 L~~~~------------------------~~~~~~~~~a~~~L~~L~~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~~~~ 573 (919)
+.... +.+..........+.|+...... -..-.-.+.+..++.+....+.++...
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 64210 00122223334444444432211 111111244555666655555455556
Q ss_pred HHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCC--CCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHh
Q 002459 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS--PHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQ 651 (919)
Q Consensus 574 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~ 651 (919)
.++..+-.+...+.-+ .+.++.++..|.+ ...+....+-.++.||....-.. -++..|..+|.
T Consensus 196 ~~L~vldaii~y~~iP---------~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~ 260 (464)
T PF11864_consen 196 ACLSVLDAIITYGDIP---------SESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHcCcCC---------hHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH------HHHHHHHHHHc
Confidence 7777776666543322 2344455555433 22356666778888887643222 24567888883
Q ss_pred hcCC---CCHHHHHHHHHHHHHcccCc--chhhHHHhcC--ChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 652 SCSN---ASPGLQERAAGALWGLSVSE--ANCIAIGREG--GVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 652 ~~~~---~~~~~~~~A~~~L~~l~~~~--~~~~~l~~~g--~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
+... .+..+-..|+..+..+.... +....+--.- .++.|...++.+++.|-...+..+.++-
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 2111 33445556777776665432 2212222222 5677777787777766666666666665
No 335
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=65.71 E-value=1.3e+02 Score=29.14 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc----ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV----NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 499 (919)
..++.++++.-+++..++..|+..+.-+.. +|. ..+|.++.+..++++.++..|...+..+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 456788888889999999999999988653 441 2589999999999999999999999999874
No 336
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.46 E-value=39 Score=31.07 Aligned_cols=73 Identities=19% Similarity=0.088 Sum_probs=60.4
Q ss_pred hcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 002459 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (919)
Q Consensus 379 ~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 457 (919)
.++..|.+-|++.++.++..|...|..+...++.. ....+.+.+.++.|++++.. .++.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34678888889999999999999999998776542 45667888999999999874 688999999999988763
No 337
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=65.21 E-value=53 Score=29.83 Aligned_cols=76 Identities=20% Similarity=0.088 Sum_probs=60.8
Q ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcc--cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC
Q 002459 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVS 674 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~ 674 (919)
..++..|..-+.++++.++..|+.+|-.+..+.. ....+.....+..|+.++......++.++..+...+..++..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677888888999999999999999999988843 356666667788899988752136889999999999998853
No 338
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=65.19 E-value=1.8e+02 Score=35.36 Aligned_cols=177 Identities=16% Similarity=0.062 Sum_probs=107.8
Q ss_pred hcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHh-CCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCC
Q 002459 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT-RSPHEGVRQEAAGALWNLSFDDRNREAIAAAGG 642 (919)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~ 642 (919)
.+++ ..-+..++..+....... .....-...+.+..++... .+.+-.+...|+..|..++..-.....=...+.
T Consensus 263 ~s~~-WK~R~Eale~l~~~l~e~----~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 263 LSKK-WKDRKEALEELVAILEEA----KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred hccc-hHHHHHHHHHHHHHHhcc----ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 3443 566677777777666532 1011111234444444443 334666777788888777765222111122346
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC--CcccHH
Q 002459 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF--NPGNAL 720 (919)
Q Consensus 643 i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~ 720 (919)
.+.++.-+.. ....+++.+..++-.+..... -....+.++..+.++++.++..+...+..... .+.+..
T Consensus 338 ~p~lld~lke---kk~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 338 FPSLLDRLKE---KKSELRDALLKALDAILNSTP------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred cchHHHHhhh---ccHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 7788888876 677888887777766554211 11245667788899999999998877777654 222222
Q ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 721 RIVEEGGVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 721 ~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.-.-.+.+|.++....+.+ +.+|.+|..+++.+.
T Consensus 409 ~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVM 442 (815)
T ss_pred hhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHH
Confidence 2222456788888887765 889999999987554
No 339
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=65.07 E-value=2 Score=45.55 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=4.2
Q ss_pred CCCCEEEecC
Q 002459 179 PKLKKLRLSG 188 (919)
Q Consensus 179 ~~L~~L~L~~ 188 (919)
++|++|+|++
T Consensus 91 ~~LRrLdLS~ 100 (498)
T KOG4237|consen 91 HRLRRLDLSK 100 (498)
T ss_pred hhhceecccc
Confidence 3444444443
No 340
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.81 E-value=11 Score=31.71 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=52.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 499 (919)
++..+..+.++.+.+|.+++..|..+..... ...+-..+.+..+...|+++++-+--.|+.+|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999987444 11122234466777888899999999999999999874
No 341
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.81 E-value=13 Score=41.49 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHhcCCCCCEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEecCCCC--CCHHHHHHHHhhCCCCcEEEecCCCCCCH
Q 002459 143 LSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD--ICGDAINALAKLCPNLTDIGFLDCLNVDE 220 (919)
Q Consensus 143 l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 220 (919)
+..+..+.|.+.+++|+. ..-..-+.+..++...|+|+.|+|++... -++..+..+. ...|++|.+.||+-.++
T Consensus 210 L~~~~~n~p~i~sl~lsn--NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSN--NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHHhhcCCcceeeeeccc--chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccc
Confidence 344455666777777741 21222245556666677777777776521 1222222221 24577777777655444
Q ss_pred H-----HH----hCCCCCCEEee
Q 002459 221 V-----AL----GNVLSVRFLSV 234 (919)
Q Consensus 221 ~-----~l----~~~~~L~~L~l 234 (919)
- .+ ..+|+|..||=
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hhhhHHHHHHHHHhcchheeecC
Confidence 1 11 25677777654
No 342
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=63.50 E-value=1.4e+02 Score=36.28 Aligned_cols=176 Identities=14% Similarity=0.027 Sum_probs=107.8
Q ss_pred HhcCCHHHHHHHHHHHHhhccCcccHHHHHHhc---CHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 002459 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG---GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG 554 (919)
Q Consensus 478 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g---~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g 554 (919)
+.+.+-.-+..|+..+......+. .....+ .+..++.... .+.+..+...++.+|..++..-.....=...+
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~--kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRL--KDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 345666677777777777766543 222222 3344444443 35677788888888888885322211112235
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcc--
Q 002459 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR-- 632 (919)
Q Consensus 555 ~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-- 632 (919)
..+.++..+.+.. ..++..+..++-..+.. + .-....+.++.++.+.++.++..+...+.......+
T Consensus 337 v~p~lld~lkekk-~~l~d~l~~~~d~~~ns---~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 337 VFPSLLDRLKEKK-SELRDALLKALDAILNS---T-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hcchHHHHhhhcc-HHHHHHHHHHHHHHHhc---c-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 6777888887665 66666666666555432 1 124667888899999999999987777765544322
Q ss_pred cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc
Q 002459 633 NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLS 672 (919)
Q Consensus 633 ~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~ 672 (919)
.-..-.-.+.++.++....+ .+.++|.+|..++..+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D---~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHIND---TDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcchhhHHHHhHHHhhhccC---CcHHHHHHHHHHHHHHH
Confidence 11111112345666666655 78999999998887765
No 343
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.26 E-value=29 Score=32.92 Aligned_cols=110 Identities=20% Similarity=0.081 Sum_probs=70.9
Q ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcC--CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC---
Q 002459 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVVLAQSCSNASPGLQERAAGALWGLSVS--- 674 (919)
Q Consensus 600 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g--~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~--- 674 (919)
..+..+..+|+++++.-|..++..+..+..+.+ .+.+.+.+ .+..++..|+. +.++.+.+.|+.+|..+...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 455667788999898888888888887776532 23443443 47788888886 46778899999998888743
Q ss_pred -cchhhHHHhc---CChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 675 -EANCIAIGRE---GGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 675 -~~~~~~l~~~---g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
++....+.-. +.++.+++++++ +.+...++.+|..+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3322222211 234445555543 4566666666666644
No 344
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=62.01 E-value=6.8 Score=33.33 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.4
Q ss_pred cCcCCCCHHHHHHHHcCCCHHHHHHH
Q 002459 38 VDWTSLPDDTVIQLMSCLNYRDRASL 63 (919)
Q Consensus 38 ~~~~~LP~eil~~If~~L~~~d~~~~ 63 (919)
..|..||.|+-..|+++|+..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56999999999999999999998653
No 345
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=62.00 E-value=5.9 Score=24.18 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=12.7
Q ss_pred CCEEEecCCCCCCHHHHHHHHhhCC
Q 002459 181 LKKLRLSGIRDICGDAINALAKLCP 205 (919)
Q Consensus 181 L~~L~L~~~~~~~~~~l~~l~~~~~ 205 (919)
|++|+|.+...-++..+..+...||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5556655553333335555555554
No 346
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=61.98 E-value=2.5e+02 Score=30.79 Aligned_cols=148 Identities=15% Similarity=-0.003 Sum_probs=80.5
Q ss_pred HHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhC------CCCHHHHHHHH
Q 002459 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR------SPHEGVRQEAA 621 (919)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~~~~~a~ 621 (919)
.++.+..-.+-+-.-+..++....+.+|+..|..|+... . +. ...-....+-.++. +.+...+..|+
T Consensus 204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~---~---~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al 276 (370)
T PF08506_consen 204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKF---E---KQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGAL 276 (370)
T ss_dssp HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHH---H---HH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHH
T ss_pred HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHH---h---HH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHH
Confidence 344455555555555554444556678888888888631 1 11 11111122223333 34567778899
Q ss_pred HHHHhhcCCccc-------------HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChH
Q 002459 622 GALWNLSFDDRN-------------REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVA 688 (919)
Q Consensus 622 ~~L~~Ls~~~~~-------------~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~ 688 (919)
..+..++..... -..+...-.+|-|. ...+..|-++..|++.+......-. ...+. +.++
T Consensus 277 ~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~----~~~~~~piLka~aik~~~~Fr~~l~-~~~l~--~~~~ 349 (370)
T PF08506_consen 277 YLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ----PDVNSHPILKADAIKFLYTFRNQLP-KEQLL--QIFP 349 (370)
T ss_dssp HHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-----SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHH
T ss_pred HHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc----ccCCCCcchHHHHHHHHHHHHhhCC-HHHHH--HHHH
Confidence 999998876422 11222222233332 1123677788889988887765311 11222 3789
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 002459 689 PLIALARSEAEDVHETAAGAL 709 (919)
Q Consensus 689 ~L~~lL~~~~~~v~~~a~~aL 709 (919)
.+++.|.+++.-|...|+.++
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhhC
Confidence 999999999999999998764
No 347
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.95 E-value=75 Score=29.11 Aligned_cols=72 Identities=21% Similarity=0.119 Sum_probs=59.2
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc------CCHHHHHHHHHHHH
Q 002459 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIA 453 (919)
Q Consensus 380 gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~------~~~~~~~~a~~~L~ 453 (919)
++..+.+-|++.++.++..|...|..+...+.. .....+...+.+..+++++.. .++.|+...+..+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 467788888999999999999999999877664 345677888999999999963 47899999988888
Q ss_pred Hhhc
Q 002459 454 NLSV 457 (919)
Q Consensus 454 ~l~~ 457 (919)
.-+.
T Consensus 113 ~W~~ 116 (139)
T cd03567 113 SWTL 116 (139)
T ss_pred HHHH
Confidence 7663
No 348
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=61.54 E-value=51 Score=38.30 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=94.2
Q ss_pred HHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHH-hcCCHHHHHHHHHHHHhhccCcccH
Q 002459 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHK 503 (919)
Q Consensus 425 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~ 503 (919)
+.+.++|.|...+++.+..+|..++..+...+..-+ ..+++.-.+|.+-.+. +..+..++..++.++..+.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------ 457 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------ 457 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------
Confidence 445677788888888899999999999998886222 3344454567776653 4578889999999999888
Q ss_pred HHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCC
Q 002459 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCK 567 (919)
Q Consensus 504 ~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~ 567 (919)
+.+-....++.+.-++++....++.+......+..++.........+..+.++|.++.+...+.
T Consensus 458 q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3333445566666666665678888888888888887765544344445567777777766543
No 349
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=60.81 E-value=57 Score=29.63 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=59.1
Q ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcc--cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc
Q 002459 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSV 673 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~ 673 (919)
..++..|.+-|.++++.++..|+.+|-.+..+.. ....+.....+..|+.++.. ....+.++..++..+..++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~-~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP-KYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHH
Confidence 4667888888889999999999999999988833 36677777889999999876 22334499999999988874
No 350
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.82 E-value=1.8e+02 Score=33.91 Aligned_cols=148 Identities=13% Similarity=0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhc--Ch----HHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSV--NA----KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 503 (919)
=|.|-+.|+-.+..+|..|+..+.++.- ++ +-...+.+. -...|..+|+++.+.+|..|...+..+.+. .-
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~--fW 252 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK--FW 252 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH--HH
Confidence 3455566777899999999999999753 33 334444433 456788999999999999998877776652 11
Q ss_pred HHHHHhcCHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 002459 504 GAIADAGGVKALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (919)
Q Consensus 504 ~~i~~~g~i~~L~~lL~~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L 582 (919)
+.|-..-.++.|-.+.... .+...+++......|-.+..++.....+ + -++|.+-..+.+.. +.++.++...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~s-e~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDNS-EKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhccc-hhHHHHHHHHHHHH
Confidence 1111111112222222110 1233467777777777777666543322 1 23445555556554 77777777666655
Q ss_pred h
Q 002459 583 A 583 (919)
Q Consensus 583 ~ 583 (919)
-
T Consensus 330 k 330 (1005)
T KOG1949|consen 330 K 330 (1005)
T ss_pred H
Confidence 4
No 351
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.35 E-value=70 Score=33.20 Aligned_cols=137 Identities=19% Similarity=0.150 Sum_probs=83.8
Q ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHhhcCC-cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchh
Q 002459 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC 678 (919)
Q Consensus 600 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 678 (919)
-++...+..|.+++......++..+..|+.. ++....+ .-..++.+.+++.+....+-..|+.++..+...-.+.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~----L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPM----LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888888776 3222222 2334444444444477778888888888887652221
Q ss_pred hHHHhcCChHHHHH-HHcc---CCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHH
Q 002459 679 IAIGREGGVAPLIA-LARS---EAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALAL 751 (919)
Q Consensus 679 ~~l~~~g~v~~L~~-lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L 751 (919)
+.+ ..+.++. ++.. ++.-|++.|-.+|..|..+..-+ ..++.|+..+.+.+ +.++..++...
T Consensus 164 --i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~ 229 (334)
T KOG2933|consen 164 --IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCF 229 (334)
T ss_pred --HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhccc
Confidence 111 2333333 3332 34569999999999998754322 24556666677665 66666665544
No 352
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.09 E-value=3.8e+02 Score=31.48 Aligned_cols=186 Identities=13% Similarity=0.057 Sum_probs=116.8
Q ss_pred HHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-CcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 507 ~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
.+.+.+|.|++++.. .+..++.. .|.++-.. +....++.+...++.+..-+.+.+ +.+++..+.++..|+..
T Consensus 327 yq~~i~p~l~kLF~~---~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS---PDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcC---cchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhh
Confidence 456678889999853 55555433 33444332 233456777888999999888886 89999999999888863
Q ss_pred CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcC-CHHHHHHHHhhcCCCCHHHHHHH
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAG-GVEALVVLAQSCSNASPGLQERA 664 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g-~i~~Lv~ll~~~~~~~~~~~~~A 664 (919)
- +.. ......+..+..+-.+++..+|.+..-+|..++.+..... +.+ .+.++.+.+++ +-...|.++
T Consensus 400 L-----~~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkd---pf~paR~a~ 467 (690)
T KOG1243|consen 400 L-----SKR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKD---PFVPARKAG 467 (690)
T ss_pred h-----chh-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcC---CCCCchhhh
Confidence 1 111 2234445555555445677888888888888877632211 222 23445555555 556677777
Q ss_pred HHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 665 AGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 665 ~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
..+++.....-+.. =+....++.++-+.-+.+..++..|-.++...-
T Consensus 468 v~~l~at~~~~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 468 VLALAATQEYFDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hHHHhhcccccchh--hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 77777665432221 112235566666777777888888887777654
No 353
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=55.95 E-value=1.1e+02 Score=26.13 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=55.0
Q ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 002459 598 EAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALW 669 (919)
Q Consensus 598 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~ 669 (919)
....+..|+..+..++....+.+...|..+...+.....+.+-|+...|-++-.. .++..+...-.++-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~---~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN---VEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc---CCHHHHHHHHHHHh
Confidence 5577888888998888888899999999999999999999999998887776544 66666665555543
No 354
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=55.16 E-value=2.1e+02 Score=33.08 Aligned_cols=198 Identities=14% Similarity=0.063 Sum_probs=112.1
Q ss_pred hcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCC----cccchhh-ccchHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002459 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS----NNSAVGQ-EAGALEALVQLTRSPHEGVRQEAAGALWN 626 (919)
Q Consensus 552 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~----~~~~~~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 626 (919)
..+-+..+++.+.+++ ++++..++..|........+.. .--+.++ ..+.+..+..-+ .+++.+...+.+|.-
T Consensus 46 lk~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~--~~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESM--ADSNLKKWLADILSV 122 (878)
T ss_pred hhhhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhc--cCchhHhHHHHHHHH
Confidence 3467899999999987 9999999999998876432111 0000111 122222222222 356788889999999
Q ss_pred hcCCcccHHHHHHcCC--------------HHHHHHHHhhcC------CC-CHHHHHHHHHHHHHcccC---cchhhHHH
Q 002459 627 LSFDDRNREAIAAAGG--------------VEALVVLAQSCS------NA-SPGLQERAAGALWGLSVS---EANCIAIG 682 (919)
Q Consensus 627 Ls~~~~~~~~l~~~g~--------------i~~Lv~ll~~~~------~~-~~~~~~~A~~~L~~l~~~---~~~~~~l~ 682 (919)
|+...+.+........ +..|..-+.... .+ -.++...+..++...-.+ .+....+.
T Consensus 123 Lamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~ 202 (878)
T KOG2005|consen 123 LAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLM 202 (878)
T ss_pred HheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 8876555443332211 112211111000 00 122333333333332222 34556777
Q ss_pred hcCChHHHHHHHccCC-----------------HH---HHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHH
Q 002459 683 REGGVAPLIALARSEA-----------------ED---VHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKM 742 (919)
Q Consensus 683 ~~g~v~~L~~lL~~~~-----------------~~---v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~ 742 (919)
+-++++.++......+ |+ +.+.|..+-..+...++...-.+..+-.+...+.+.+..++.
T Consensus 203 Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~ 282 (878)
T KOG2005|consen 203 EVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPL 282 (878)
T ss_pred HhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHH
Confidence 8888888777765432 22 445555555555555555555566777888888888877788
Q ss_pred HHHHHHHHHH
Q 002459 743 ARFMAALALA 752 (919)
Q Consensus 743 ~~~~A~~~L~ 752 (919)
.+.+-+..|+
T Consensus 283 ~kKQ~~ymLa 292 (878)
T KOG2005|consen 283 LKKQMAYMLA 292 (878)
T ss_pred HHHHHHHHHH
Confidence 8888777776
No 355
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=54.61 E-value=14 Score=31.74 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHH
Q 002459 446 SEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAE 487 (919)
Q Consensus 446 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 487 (919)
...++.+..++..|+.-..+++.|+++.|+.+|.++|..+..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 356778888999999999999999999999999998877653
No 356
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=53.07 E-value=9.7 Score=34.34 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=5.4
Q ss_pred CCCEEEecCC
Q 002459 180 KLKKLRLSGI 189 (919)
Q Consensus 180 ~L~~L~L~~~ 189 (919)
.+..++|+.|
T Consensus 28 E~h~ldLssc 37 (177)
T KOG4579|consen 28 ELHFLDLSSC 37 (177)
T ss_pred Hhhhcccccc
Confidence 4445555555
No 357
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=52.93 E-value=3e+02 Score=28.92 Aligned_cols=205 Identities=11% Similarity=0.027 Sum_probs=136.5
Q ss_pred HHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-CHHHHHHHHHHHH
Q 002459 375 FWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIA 453 (919)
Q Consensus 375 ~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~ 453 (919)
+++.+-...|+..+...+-+.+..+.....++...+..... +...........+..+++- .. .+++...+-..|.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~--~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRS--PTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR 150 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcc--hHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence 55556677888888877777777787777777654443211 1111112233334444443 23 3677777777888
Q ss_pred HhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc-ccHHHHHHhcC---HHH-HHHHHhccCCCCHH
Q 002459 454 NLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGG---VKA-LVDLIFKWSSGGDG 528 (919)
Q Consensus 454 ~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~---i~~-L~~lL~~~~~~~~~ 528 (919)
.+...+...+.+.+...........+.++=++..-|..+...+.... .....+...+. .+. --.++. +++--
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~---s~Nyv 227 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR---SENYV 227 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc---cccee
Confidence 88888888888888888888888888877788888888777776642 22222332222 122 334553 57888
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHh----cChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCC
Q 002459 529 VLERAAGALANLAADDKCSMEVAL----AGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (919)
Q Consensus 529 ~~~~a~~~L~~L~~~~~~~~~l~~----~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~ 587 (919)
+++.+...|+.+..+..+...+.. ...+..+..++++++ ..+|-.|-.+..-....+.
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcCCC
Confidence 889999999999988777655443 366888889999886 7889999888887777543
No 358
>PRK09169 hypothetical protein; Validated
Probab=52.44 E-value=7.8e+02 Score=33.65 Aligned_cols=78 Identities=22% Similarity=0.063 Sum_probs=40.7
Q ss_pred hhHHHHHHhcCCchHHHhhHHHHHHhhccC--CccchhhhhhhhhhhchHHHHHHHHHHhccchhHHHHHHHHHhhcccc
Q 002459 835 EIGRFITMLRNPSSVLKSCAAFALLQFTIP--GGRHAMHHASLMQGAGAARVLRAAAAAAAAPIEAKIFARIVLRNLEHH 912 (919)
Q Consensus 835 ~i~~l~~~l~~~~~~~~~~aa~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (919)
.-..|-.+-+.+....-..|++.|...--. ..-.++...++-|-+++..-...... ..-..+.-.+||-.|+-|-+|
T Consensus 753 lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~~f~~~~laq~aNa~aR~~~~~~-~~~~~~~~~~~~~~L~~LA~h 831 (2316)
T PRK09169 753 LANSLNALSKWPQEPACQQAALLLAERLGSAGLPFRTFTMAGLAQLANAMARLILKLE-DQDDEEDLALARARLRELAAH 831 (2316)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchhhcCHHHHHHHHHHHHHHHhhcc-ccccchhhHHHHHHHHHHHHH
Confidence 334455566788877777777777444211 12244555666665542221111110 022335566777777777666
Q ss_pred c
Q 002459 913 H 913 (919)
Q Consensus 913 ~ 913 (919)
-
T Consensus 832 L 832 (2316)
T PRK09169 832 L 832 (2316)
T ss_pred h
Confidence 4
No 359
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=51.36 E-value=97 Score=32.48 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=49.1
Q ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHH--HHHHcCCHHHHHHHHhhcC---------CCCHHHHHHHHHHH
Q 002459 600 GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRE--AIAAAGGVEALVVLAQSCS---------NASPGLQERAAGAL 668 (919)
Q Consensus 600 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~l~~~g~i~~Lv~ll~~~~---------~~~~~~~~~A~~~L 668 (919)
-++|.++.++.+.+++++..++.+|..+........ .+.+.|..+.+.+.+..+. ..+..+-..|--+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468899999999999999999999999887643322 3555665555544443211 14455666677777
Q ss_pred HHcc
Q 002459 669 WGLS 672 (919)
Q Consensus 669 ~~l~ 672 (919)
..+.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7764
No 360
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=50.74 E-value=8.5 Score=38.43 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=40.9
Q ss_pred cccCcCCCCHHHHHHHHcCCC-HHHHHHHHhhcHhHHHHhcCCCCcccc
Q 002459 36 EVVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSL 83 (919)
Q Consensus 36 ~~~~~~~LP~eil~~If~~L~-~~d~~~~~~vck~w~~l~~~~~lw~~l 83 (919)
....+.+||.+++..|+.+++ -+|+..+++|-.....+..+..+|+++
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356799999999999999998 799999999988888887777788755
No 361
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=50.58 E-value=45 Score=30.64 Aligned_cols=70 Identities=20% Similarity=0.106 Sum_probs=55.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHhcC-CHH---HHHHHHHHHHhhcc
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLARSM-NRL---VAEEAAGGLWNLSV 498 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~~Ls~ 498 (919)
++..|.+.|.++++.++..|+..|-.+.. .+.....+....-+..|.+++.+. ... |++.+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34567778899999999999999999987 357778887777788999988753 333 88888887777665
No 362
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.45 E-value=3.4e+02 Score=31.84 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=113.8
Q ss_pred HhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCC
Q 002459 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFD 630 (919)
Q Consensus 551 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 630 (919)
...+.++.+++++...+ ..++..-+.-+-....+ ......+..+++.+..-+.+.++.+|+.++..+..|+.-
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~LL~~i~~~i~~------Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLLLLQYIEKYIDH------LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHHHHHhHHHHhhh------cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 45578999999999876 77776665555544432 223445778899999999999999999999999888754
Q ss_pred cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHH
Q 002459 631 DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALW 710 (919)
Q Consensus 631 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~ 710 (919)
-..+ .+ ....+..+-++-. +.+..+|....-+|+.++...... ..+.-.+-++.+.++++-..-|.+++.+++
T Consensus 400 L~~~-~L-n~Ellr~~ar~q~---d~~~~irtntticlgki~~~l~~~--~R~~vL~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 400 LSKR-NL-NGELLRYLARLQP---DEHGGIRTNTTICLGKIAPHLAAS--VRKRVLASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred hchh-hh-cHHHHHHHHhhCc---cccCcccccceeeecccccccchh--hhccccchhhhhhhcCCCCCchhhhhHHHh
Confidence 2211 11 0001112222211 245667777777777776542211 112122344555667666777888888877
Q ss_pred HHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002459 711 NLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAY 753 (919)
Q Consensus 711 ~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~ 753 (919)
......+... +....+|.++-+..+.+ +.+|-.|-.++..
T Consensus 473 at~~~~~~~~--va~kIlp~l~pl~vd~e-~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 473 ATQEYFDQSE--VANKILPSLVPLTVDPE-KTVRDTAEKAIRQ 512 (690)
T ss_pred hcccccchhh--hhhhccccccccccCcc-cchhhHHHHHHHH
Confidence 7665333321 22346677777766654 6778777777653
No 363
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.59 E-value=2.3e+02 Score=35.86 Aligned_cols=219 Identities=16% Similarity=0.090 Sum_probs=102.3
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHhhccCc--ccHHHHHHh-cCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCc
Q 002459 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (919)
Q Consensus 469 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~ 545 (919)
.+.+.+......--..++.-+..++.+.+..+ .......+. |.+-+...+... .....+++.....++.++...+.
T Consensus 796 naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~-s~~~~evr~~sl~~l~silet~g 874 (1610)
T KOG1848|consen 796 NAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDN-SSRGVEVRISSLEALVSILETVG 874 (1610)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHh-cCccceeeHHHHHHHHHHHhccc
Confidence 34444444433333445555556666666543 222333333 334444444443 45666777777788877764332
Q ss_pred chHHHHhcChHHHHHHHHhcCC------chHHHHHHHHHHHHHhcCCCCCCcccch--hhccchHHHHHHHhC-CCCHHH
Q 002459 546 CSMEVALAGGVHALVMLARSCK------FEGVQEQAARALANLAAHGDSNSNNSAV--GQEAGALEALVQLTR-SPHEGV 616 (919)
Q Consensus 546 ~~~~l~~~g~i~~L~~ll~~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~i~~Lv~lL~-~~~~~~ 616 (919)
.. .=+| -+.+++++++-. ...+.+.+-.+|+-++.+. .+.. -.-.+.++.++.+.+ ..|..+
T Consensus 875 e~---ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDf-----LqSLp~sci~~lidtl~~fs~QktdlNI 945 (1610)
T KOG1848|consen 875 EH---LLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDF-----LQSLPTSCILDLIDTLLVFSRQKTDLNI 945 (1610)
T ss_pred hh---hccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcc-----hhcCChHHHHHHHHHHHHHHhhhccccc
Confidence 11 1112 444444444211 1334445555566555431 1111 011344555555543 357778
Q ss_pred HHHHHHHHHhhcCCccc-HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH--cccCcchhhHHHhcCChHHHHHH
Q 002459 617 RQEAAGALWNLSFDDRN-REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG--LSVSEANCIAIGREGGVAPLIAL 693 (919)
Q Consensus 617 ~~~a~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~--l~~~~~~~~~l~~~g~v~~L~~l 693 (919)
.-.|.+.+|+++..-.+ +....+.+.-...++.+.+ +....++-..++|++.- ++..-++...-++.|+++.+.+.
T Consensus 946 SltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri 1024 (1610)
T KOG1848|consen 946 SLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-SMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRI 1024 (1610)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-cccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHH
Confidence 88899999999865333 2222222233334444443 22445555566665422 12111111223344555555555
Q ss_pred HccCC
Q 002459 694 ARSEA 698 (919)
Q Consensus 694 L~~~~ 698 (919)
+.+..
T Consensus 1025 ~~Shg 1029 (1610)
T KOG1848|consen 1025 FNSHG 1029 (1610)
T ss_pred Hhhhc
Confidence 54433
No 364
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.99 E-value=8.5e+02 Score=32.52 Aligned_cols=253 Identities=13% Similarity=0.026 Sum_probs=126.4
Q ss_pred HHHHHHHHhhhcCC--CChhHHHHhhcHHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHH
Q 002459 356 ILSHILLRTAESNP--QGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLL 433 (919)
Q Consensus 356 ~~~~~l~~~~~~~~--~~~~~~~~~~gi~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~L 433 (919)
.+...+.++++.+. ...++.++.-....++..+...++-.+-.++++++.|+.--+.. ..-++..+..
T Consensus 851 al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~----------~f~a~~aq~~ 920 (2067)
T KOG1822|consen 851 ALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA----------PFVASLAQNS 920 (2067)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc----------chHHHHHHHH
Confidence 44455777877765 33334355555677888888888999999999999988543322 1122344566
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHhhcCh-HHHHHHHHhCcHHHHHHHHhc-CCHHHHHHHHHHHHhhccCc-ccHHHHHHh
Q 002459 434 LDLAKS-WREGLQSEAAKAIANLSVNA-KVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADA 509 (919)
Q Consensus 434 v~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~ 509 (919)
++-|.+ .|+..|..-.-+++.+-... ..-..-....++..+..+-.+ ..+.|+..++.++.-+.... ......++.
T Consensus 921 fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~ 1000 (2067)
T KOG1822|consen 921 FDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP 1000 (2067)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH
Confidence 777776 45555544444444443211 000000012235666666665 45699999998888887753 233333332
Q ss_pred cCHHHHHHHHhccCCCCHHHHHHHHHHHH------Hhhc--CCcch-----HHH--HhcChHHHHHHHHhcCCchHHHHH
Q 002459 510 GGVKALVDLIFKWSSGGDGVLERAAGALA------NLAA--DDKCS-----MEV--ALAGGVHALVMLARSCKFEGVQEQ 574 (919)
Q Consensus 510 g~i~~L~~lL~~~~~~~~~~~~~a~~~L~------~L~~--~~~~~-----~~l--~~~g~i~~L~~ll~~~~~~~~~~~ 574 (919)
-+..+..++.+.+....+++..--+.+. ++.. .++.+ ... ...-..-. ..++.+.+++.++..
T Consensus 1001 -tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~-~allls~~d~lnqa~ 1078 (2067)
T KOG1822|consen 1001 -TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAA-CALLLSHSDPLNQAA 1078 (2067)
T ss_pred -HHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHH-HHHhcCCCccchHHH
Confidence 2333444444322233333332222222 2211 01100 000 00001111 113334445888889
Q ss_pred HHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002459 575 AARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWN 626 (919)
Q Consensus 575 a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 626 (919)
+..+|.++-... + + ...-.-.|..|..++.+...-.|......++.
T Consensus 1079 ai~clqqlhlFa---p--r-~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrq 1124 (2067)
T KOG1822|consen 1079 AIKCLQQLHLFA---P--R-HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQ 1124 (2067)
T ss_pred HHHHHHHHHhhc---c--h-hccHHHHHHHHHHHhcchhhhhhhhHHhhhhH
Confidence 999998876642 1 1 22223445556665555443333333333333
No 365
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=46.31 E-value=7.7 Score=34.95 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHhhCCCCcEEEecCCCCCCH--HHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCEEEeecc
Q 002459 200 LAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (919)
Q Consensus 200 l~~~~~~L~~L~l~~~~~l~~--~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (919)
+...+|.++.|++.++ .++| +.+..+|.|+.|+++++.-... ..-++ .+.+|-.|+..++
T Consensus 72 ft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~-~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAE--PRVIA-PLIKLDMLDSPEN 133 (177)
T ss_pred Hhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccc--hHHHH-HHHhHHHhcCCCC
Confidence 3344456666666665 4544 2356666677777766532211 12222 2555666666555
No 366
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.56 E-value=6.7e+02 Score=30.86 Aligned_cols=308 Identities=14% Similarity=0.094 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhc-ChHHHHHHHHh--Cc
Q 002459 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSV-NAKVAKAVAEE--GG 470 (919)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~--g~ 470 (919)
.|.+|++.+..++..+..+ ...-..+++...+.|. +.+-.|+..|+-+|..+.. .+.....+... +.
T Consensus 478 Lrarac~vl~~~~~~df~d---------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKD---------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HHHHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 4889999999988554432 1222356667788887 6677899999999999765 33333333322 22
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHhhccC-cccHHHHHHhcCHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhc---
Q 002459 471 INILAVLARSMNRLVAEEAA-GGLWNLSVG-EEHKGAIADAGGVKALVDLIFK---WSSGGDGVLERAAGALANLAA--- 542 (919)
Q Consensus 471 i~~Lv~lL~~~~~~~~~~a~-~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~---~~~~~~~~~~~a~~~L~~L~~--- 542 (919)
++.|+.+.+.-+.+.....+ ..+..-+.. .+....+++ .......+++.. ....+++-...|.++|..+..
T Consensus 549 mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~ 627 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILL 627 (1010)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 44555555542222222221 122222221 011111111 133445666653 122223333344555544432
Q ss_pred CCcchHHHHhc--ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHH
Q 002459 543 DDKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEA 620 (919)
Q Consensus 543 ~~~~~~~l~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 620 (919)
+-++...+... ..+-+++..+-..+..++-+.+.....+++... .+..-.+ =+..+.+.+.+.....+--...
T Consensus 628 s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~---~~Isp~m--W~ll~li~e~~~~~~~dyf~d~ 702 (1010)
T KOG1991|consen 628 SLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS---KEISPIM--WGLLELILEVFQDDGIDYFTDM 702 (1010)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh---cccCHHH--HHHHHHHHHHHhhhhHHHHHHH
Confidence 22333333221 333333333333334677777777777776541 1111111 2455666666766666667777
Q ss_pred HHHHHhhcCCcccHHHHHHcC-CHH----HHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHc
Q 002459 621 AGALWNLSFDDRNREAIAAAG-GVE----ALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALAR 695 (919)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~g-~i~----~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~ 695 (919)
.-+|.|....... .+...+ ..+ ..-.++.+ .+....-.+.|+..+--+..+=.+ ..+. .+|.++++.-
T Consensus 703 ~~~l~N~vt~g~~--~~~s~~~y~~il~~i~~~~l~~-e~~~D~d~~~a~kLle~iiL~~kg---~~dq-~iplf~~~a~ 775 (1010)
T KOG1991|consen 703 MPALHNYVTYGTP--SLLSNPDYLQILLEIIKKVLTS-ENGEDSDCESACKLLEVIILNCKG---LLDQ-YIPLFLELAL 775 (1010)
T ss_pred HHHHhhheeeCch--hhhccchHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHHhcC---cHhh-HhHHHHHHHH
Confidence 7888876544222 222221 122 33333433 234444555566666554322110 0000 3666655542
Q ss_pred ------cCCHHHHHHHHHHHHHH-cCCcccHHHHHH
Q 002459 696 ------SEAEDVHETAAGALWNL-AFNPGNALRIVE 724 (919)
Q Consensus 696 ------~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~ 724 (919)
..+...+..++++..|. -.+|..--.+.+
T Consensus 776 ~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe 811 (1010)
T KOG1991|consen 776 SRLTREVETSELRVMLLEVVINALYYNPKLTLGILE 811 (1010)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 24566777777766554 346655544444
No 367
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=45.46 E-value=2.9e+02 Score=26.67 Aligned_cols=125 Identities=20% Similarity=0.135 Sum_probs=74.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccC--C-CCHHHHHHHHHHHHHhhcCCcchHH
Q 002459 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS--S-GGDGVLERAAGALANLAADDKCSME 549 (919)
Q Consensus 473 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~-~~~~~~~~a~~~L~~L~~~~~~~~~ 549 (919)
.+.-++.++++.+|..|+.+|..|-.+.. ..+..-+... . .-...-..-+..+.
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk------------~~L~~Ae~~~~~~~sFtslS~tLa~~i~----------- 100 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSK------------PFLAQAEESKGPSGSFTSLSSTLASMIM----------- 100 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccH------------HHHHHHHhcCCCCCCcccHHHHHHHHHH-----------
Confidence 33345678899999999999988887531 1111121100 0 01111111111111
Q ss_pred HHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHH----HHHHHhCCCCHHHHHHHHHHHH
Q 002459 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE----ALVQLTRSPHEGVRQEAAGALW 625 (919)
Q Consensus 550 l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~----~Lv~lL~~~~~~~~~~a~~~L~ 625 (919)
..-..|+..+....+..+....++++..|... .+..+- ..|.++ .+..++.+.|.+++..++.++.
T Consensus 101 ----~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~---tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~ 170 (182)
T PF13251_consen 101 ----ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQA---TPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLG 170 (182)
T ss_pred ----HHHHHHHHHHhcccccHHHHHHHHHHHHHHcc---CChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 12345667777666678888999999999875 333222 234444 4445677789999999988888
Q ss_pred hhcCC
Q 002459 626 NLSFD 630 (919)
Q Consensus 626 ~Ls~~ 630 (919)
.+..-
T Consensus 171 ~l~s~ 175 (182)
T PF13251_consen 171 ALLSV 175 (182)
T ss_pred HHHcC
Confidence 76543
No 368
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=45.46 E-value=4.2e+02 Score=28.49 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=107.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhc-Ch-HHHHHHHHhCc--HHHHHHHHhcC-----C--------HHHHHHHHHH
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NA-KVAKAVAEEGG--INILAVLARSM-----N--------RLVAEEAAGG 492 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~~g~--i~~Lv~lL~~~-----~--------~~~~~~a~~~ 492 (919)
++.+-+.|.+..+.....+++.|.++.. +. .....+...=. .+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788999999988888999999999887 44 55566655433 56677777321 1 2788777776
Q ss_pred HHhhccC--cccHHHHHHh-cCHHHHHHHHhccCCCCHHHHHHHHHHHHH-hhcCCcc----hHHHHhcChHHHHHHHHh
Q 002459 493 LWNLSVG--EEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAGALAN-LAADDKC----SMEVALAGGVHALVMLAR 564 (919)
Q Consensus 493 L~~Ls~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~-L~~~~~~----~~~l~~~g~i~~L~~ll~ 564 (919)
+..+... +..+..+.+. +.+..+.+-|. .+++++....+.+|.. +..++.. +..+..+..+..|..+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~---~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR---KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc---CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 6666553 3566666654 45666666664 4788888888888884 5555433 445666778899999776
Q ss_pred cCCch----HHHHHHHHHHHHHhcCC
Q 002459 565 SCKFE----GVQEQAARALANLAAHG 586 (919)
Q Consensus 565 ~~~~~----~~~~~a~~~L~~L~~~~ 586 (919)
... + .+...+-..|..+|..+
T Consensus 215 ~~~-~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 215 RDG-EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred ccC-CcccchHHHHHHHHHHHHhcCC
Confidence 554 4 77788888888888653
No 369
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=44.80 E-value=1.4e+02 Score=34.50 Aligned_cols=108 Identities=16% Similarity=0.025 Sum_probs=74.2
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc------ChHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Q 002459 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA------GGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (919)
Q Consensus 512 i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~------g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~ 585 (919)
...+..+|. +++-.++-..+.+++|+..+-....+++++ ..+..+++-+.+.. |.++..|+.++..+..-
T Consensus 301 ~~~~~~LLd---ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~-py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLD---SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY-PYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhC
Confidence 456777784 477777777788888887643333344442 23445555555665 89999999999888764
Q ss_pred CCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhc
Q 002459 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLS 628 (919)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 628 (919)
+. +.......++...+.-+++.+.-+|..|.+.+..|-
T Consensus 377 ~s-----k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 377 NS-----KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cc-----cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 32 222334567788888888889999999999998763
No 370
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=44.50 E-value=8.7 Score=22.24 Aligned_cols=9 Identities=22% Similarity=0.010 Sum_probs=5.2
Q ss_pred cceeccccc
Q 002459 280 LKVLCALNC 288 (919)
Q Consensus 280 L~~L~l~~c 288 (919)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 555555555
No 371
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.41 E-value=21 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHh
Q 002459 444 LQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR 479 (919)
Q Consensus 444 ~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~ 479 (919)
+|..|+++|+++.... ++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd~~----------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR----------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH----------HHHHHHHHhc
Confidence 5778888888887522 6778877765
No 372
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.18 E-value=2.4e+02 Score=29.53 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHh
Q 002459 431 RLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (919)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 509 (919)
...+..|.+++=+.+..++..+..|+. .++........ .|-.+++-+++....|-..|+.++..+...-.+.-. +
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~--~- 166 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID--Q- 166 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH--H-
Confidence 345566667766777777777777765 44444433333 466777777888888999999999988875322211 1
Q ss_pred cCHHHHHH-HHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002459 510 GGVKALVD-LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (919)
Q Consensus 510 g~i~~L~~-lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (919)
..+.++. ++.+....+.-+++.|-.+|..+...-... ..++.|+..+.+.+ +.++..++.+..+
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCFSR 231 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhccccc
Confidence 2334443 333323345567888888887776432221 24566666666665 5666655554433
No 373
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.05 E-value=1.1e+02 Score=28.05 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=57.4
Q ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCc--ccHHHHHHcCCHHHHHHHHhhcCCCCHH--HHHHHHHHHHHccc
Q 002459 599 AGALEALVQLTRSPHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVVLAQSCSNASPG--LQERAAGALWGLSV 673 (919)
Q Consensus 599 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~--~~~~A~~~L~~l~~ 673 (919)
..++..|.+-|.+.++.++..|+.+|-.+..+. .....+.....+..|..++.+ ....+. +++.+...+..++.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~-~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS-KKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH-TTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc-CCCCchhHHHHHHHHHHHHHHH
Confidence 467788888889999999999999999888874 336666666788889998876 222333 89999999988874
No 374
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.40 E-value=3.3e+02 Score=26.41 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=84.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (919)
+.++++..+.+..++..|...+.......-.| | ...+|.++.+..++++.++..|...+..+.. .+.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn----P--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVN----P--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC----h--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 56778778899999999999998755332222 1 1247889999999999999999999999986 333
Q ss_pred HHHHHHHhCcHHHHHHHHhc--CCHH--H---HHHHHHHHHhhccC-cccHHHHHHhcCHHHHHHHHhccC-----CCCH
Q 002459 461 VAKAVAEEGGINILAVLARS--MNRL--V---AEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWS-----SGGD 527 (919)
Q Consensus 461 ~~~~i~~~g~i~~Lv~lL~~--~~~~--~---~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~-----~~~~ 527 (919)
.-..=.. .|+..-.++-+. ++.. . .......++.+..+ ...|.++. ..|++.+.... ....
T Consensus 79 ~v~~~~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~ 152 (187)
T PF12830_consen 79 LVESRYS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSP 152 (187)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccch
Confidence 2222111 245544444332 1111 1 44455566666663 45666664 44666665311 1123
Q ss_pred HHHHHHHHHHHHhhc
Q 002459 528 GVLERAAGALANLAA 542 (919)
Q Consensus 528 ~~~~~a~~~L~~L~~ 542 (919)
.-......+..||+.
T Consensus 153 ~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 153 SDLDFLLFLAENLAT 167 (187)
T ss_pred hHHHHHHHHHHHHhc
Confidence 334444555555554
No 375
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=41.81 E-value=46 Score=28.68 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCC
Q 002459 702 HETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGS 740 (919)
Q Consensus 702 ~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~ 740 (919)
....+..|..|+..|+....+++.|+++.|+++|.+.+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 456778889999999999999999999999999988763
No 376
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.60 E-value=67 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=32.8
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHH
Q 002459 686 GVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE 724 (919)
Q Consensus 686 ~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~ 724 (919)
+++.|+.-|.+++++|...|+.+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 678899999999999999999999999987755555543
No 377
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=40.99 E-value=3.9e+02 Score=29.14 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=93.5
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcC---------CchHHHHHHHHHHHHHh
Q 002459 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC---------KFEGVQEQAARALANLA 583 (919)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~---------~~~~~~~~a~~~L~~L~ 583 (919)
..++.+|.+ ......+...+.++.-|+.+.+.-..+....-++.|+.+..-+ .+..+...+..+|.|+.
T Consensus 48 e~i~~Vle~--~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLEN--GEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhc--CCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 346677753 2334556677788888888776655555555566666665411 12467789999999999
Q ss_pred cCCCCCCcccchhhccchHHHHHHHhCCC-----CHHHHHHHHHHHHhhcCC-ccc-HHHHHHcCCHHHHHHHHhhcCC-
Q 002459 584 AHGDSNSNNSAVGQEAGALEALVQLTRSP-----HEGVRQEAAGALWNLSFD-DRN-REAIAAAGGVEALVVLAQSCSN- 655 (919)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~-~~~-~~~l~~~g~i~~Lv~ll~~~~~- 655 (919)
.+ ....+....+......+.+.+... ...+...=.+.|.-++.- .+. .+.+++.+|++.+-+.+.+...
T Consensus 126 f~---Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgi 202 (532)
T KOG4464|consen 126 FH---SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGI 202 (532)
T ss_pred hc---cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccC
Confidence 86 444555555666666666554321 123333344555544443 344 4455667899998888865211
Q ss_pred -----CC------HHHHHHHHHHHHHcccC
Q 002459 656 -----AS------PGLQERAAGALWGLSVS 674 (919)
Q Consensus 656 -----~~------~~~~~~A~~~L~~l~~~ 674 (919)
.+ .+....|+.++.|+...
T Consensus 203 dse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 203 DSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 11 13444677778888754
No 378
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=39.92 E-value=4.1e+02 Score=26.75 Aligned_cols=131 Identities=13% Similarity=-0.006 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhcc--CCCC-------------HHHHHHHHHHHHHhhcCCcch
Q 002459 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW--SSGG-------------DGVLERAAGALANLAADDKCS 547 (919)
Q Consensus 483 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~-------------~~~~~~a~~~L~~L~~~~~~~ 547 (919)
......++..+..|...++....+.+.+.++.+.+.|.+. .++. ..+-..-...|+.++.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455566777777777777666666777777777777642 1111 122334456788889899999
Q ss_pred HHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHH-HHHHhCCCCHHHHHHHHHHHHh
Q 002459 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA-LVQLTRSPHEGVRQEAAGALWN 626 (919)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~-Lv~lL~~~~~~~~~~a~~~L~~ 626 (919)
+.+-+.+....+..+....+.+++... .|.+|-.. ..|.... |-..|.+++..+|..|..-|..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~------------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYS------------VDGHPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCC------------CccHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888889999999999987653333222 34444221 1223333 4467888999999999998877
Q ss_pred hc
Q 002459 627 LS 628 (919)
Q Consensus 627 Ls 628 (919)
+.
T Consensus 223 ll 224 (226)
T PF14666_consen 223 LL 224 (226)
T ss_pred Hh
Confidence 64
No 379
>PRK09169 hypothetical protein; Validated
Probab=39.36 E-value=1.2e+03 Score=32.06 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=48.1
Q ss_pred hhcHHHHHHhh-ccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHcc-CCHHHHHHHHHHHHH-
Q 002459 378 KQGAGLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN- 454 (919)
Q Consensus 378 ~~gi~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~~~~~a~~~L~~- 454 (919)
.+.|..+++-+ +=++......++..|......+... . .-.+...+-.++..|+. ++......++..|..
T Consensus 162 ~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l-------~-~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~r 233 (2316)
T PRK09169 162 AISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRL-------L-QAMDAQEVANALNALSKWPDSPRCRNAAERLAER 233 (2316)
T ss_pred hHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHH-------H-HhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44566777777 3355455555666665544433321 1 22334445555666654 555555566666665
Q ss_pred hhcChHHHHHHHHhCcHHHHHHHHhc
Q 002459 455 LSVNAKVAKAVAEEGGINILAVLARS 480 (919)
Q Consensus 455 l~~~~~~~~~i~~~g~i~~Lv~lL~~ 480 (919)
+..++..+..+- .-.+..+++-|+.
T Consensus 234 L~~~~~l~~~l~-~q~va~~LNAlSK 258 (2316)
T PRK09169 234 LADEPGLLQSLR-AQEVALLLNALSK 258 (2316)
T ss_pred HhcChHHHHhcC-HHHHHHHHHHHhc
Confidence 554555443332 2235555555554
No 380
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.20 E-value=43 Score=30.72 Aligned_cols=28 Identities=46% Similarity=0.572 Sum_probs=19.3
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 686 GVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 686 ~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
-|++|+.+|.+.++++...|+.+|.+-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 3788888888888888888888888754
No 381
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.73 E-value=1.9e+02 Score=26.64 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=54.3
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHH-HHHHHhc---CCHHHHHHHHHHHHhhcc
Q 002459 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINI-LAVLARS---MNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 429 ~l~~Lv~lL~~-~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~Ls~ 498 (919)
++..|.+.|.+ .++.++..|+..|-.+.. .......|+..+-+.. |++++.. .+..|+..++..+...+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 34566666764 589999999999999987 4577788888888887 8999863 345788888888877775
No 382
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=37.15 E-value=48 Score=20.73 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc
Q 002459 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480 (919)
Q Consensus 443 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~ 480 (919)
.+|..|+.+|+++.... +++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~~~----------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE----------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh----------HHHHHHHHhcC
Confidence 46888999999985432 56667776653
No 383
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.51 E-value=7.5e+02 Score=28.83 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=105.8
Q ss_pred cHHHHHHHHhc-CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchH
Q 002459 470 GINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (919)
Q Consensus 470 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 548 (919)
.+|.|+.++.. .-.+-...+...|...+....+...+.+ .++..+.....+++++.+.....+.. .....
T Consensus 360 VLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e-----~~ly~lg~a~hp~ee~i~~l~~k~~~----~Si~s 430 (896)
T KOG4337|consen 360 VLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHE-----QLLYWLGSADHPSEETIATLLNKRCE----ASISS 430 (896)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHH-----HHHHHhhccCCCcHHHHHHHHHHHhh----hhhhh
Confidence 37777777755 3344556667778888777655555433 24444433234455443333222222 11111
Q ss_pred HH-HhcCh---HHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCC----CCcccch------hhccchHHHHHHHhCCC-C
Q 002459 549 EV-ALAGG---VHALVMLARSCKFEGVQEQAARALANLAAHGDS----NSNNSAV------GQEAGALEALVQLTRSP-H 613 (919)
Q Consensus 549 ~l-~~~g~---i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~----~~~~~~~------~~~~~~i~~Lv~lL~~~-~ 613 (919)
.. ..+|. +..|+..+.. .++...++..+.++...+-. ..+.+.. +..+.+++.|+..-.++ .
T Consensus 431 ~~~~re~v~~iv~tlir~~~~---~gve~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~ 507 (896)
T KOG4337|consen 431 LNSCREGVETIVNTLIRDLTA---GGVEVRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEK 507 (896)
T ss_pred hHHHhhhHHHHHHHHHHHhhC---CCcccHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCC
Confidence 11 12222 3333332222 22333344444444332210 1000000 12345666666665554 4
Q ss_pred HHHHHHHHHHHHhhcCC--cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHH
Q 002459 614 EGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLI 691 (919)
Q Consensus 614 ~~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~ 691 (919)
|++-..|..+|...-.. .+....+. ....-.+.++..+ .++..|+.+|.++..+-++ +..++
T Consensus 508 p~~s~~atsAl~~f~l~si~~~~kk~~-~~i~hq~~k~f~~------t~rTlA~dIiL~~~P~~~~---------v~n~l 571 (896)
T KOG4337|consen 508 PEQSMRATSALAEFFLRSICQTKKKIG-APITHQLIKLFRN------TTRTLAIDIILKCVPDHQN---------VANLL 571 (896)
T ss_pred cchhHHHHHHHHhcCchhhhHHHHHhc-chHHHHHHHHHhc------chhHHHHHHHHhcCccHHH---------HHHHH
Confidence 55666666666654322 11122221 1233445555543 3667888888887665443 33445
Q ss_pred HHHccCCHHHHHHHHHHHHHHcC
Q 002459 692 ALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 692 ~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
-.|...+.+.....+.++.-++.
T Consensus 572 l~l~~~dqE~~~Y~l~~i~ml~~ 594 (896)
T KOG4337|consen 572 LTLNPDDQEKWHYLLKAIEMLSG 594 (896)
T ss_pred HHhCCChHHHHHHHHHHHHHHhc
Confidence 56677777888888888887765
No 384
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.21 E-value=1.9e+02 Score=25.22 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=48.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHH------hcCCHHHHHHHHHHHHhh
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLA------RSMNRLVAEEAAGGLWNL 496 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL------~~~~~~~~~~a~~~L~~L 496 (919)
++..|.+.|.+.++.++..|+..|-.|.. .+.....+.....+..++++. ...+..+++.+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45577778888999999999999999987 566777777665555554431 123677888887766554
No 385
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=35.36 E-value=3.6e+02 Score=29.14 Aligned_cols=145 Identities=11% Similarity=-0.044 Sum_probs=79.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhcC-------CHHHHHHHHHHHHhhccCccc
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEH 502 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~~ 502 (919)
...+.+.+.++++..+..| |..|..|+... .-+|.++.++.+. +.......+.++..|..++..
T Consensus 180 f~~It~a~~~~~~~~r~~a---L~sL~tD~gl~------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 180 FEEITEALVGSNEEKRREA---LQSLRTDPGLQ------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHhCCCHHHHHHH---HHHhccCCCch------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 3456666666666666554 44455554221 1256666666442 566777888888888888755
Q ss_pred HHHHHHhcCHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcCCchH-HHHH
Q 002459 503 KGAIADAGGVKALVDLIFKW-------SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEG-VQEQ 574 (919)
Q Consensus 503 ~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~~~~~-~~~~ 574 (919)
.-...-...++.++..+-.. ......+++.|+..|..++..-...-.-.....+..+.+.+.++..+- ...-
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 44333333677777665321 123357888999999888853211111112223445555555443222 2344
Q ss_pred HHHHHHHHh
Q 002459 575 AARALANLA 583 (919)
Q Consensus 575 a~~~L~~L~ 583 (919)
|+..|..+.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 555555443
No 386
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.32 E-value=1.3e+02 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.1
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHh
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEE 468 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~ 468 (919)
+++.|++.|.++++++...|+.+|.+.+.+++..+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5778999999999999999999999999876665555543
No 387
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.27 E-value=5.1e+02 Score=27.10 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=50.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccH--HHHHHhcCHHHHHHHHhcc---------CCCCHHHHHHHHHHHH
Q 002459 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK--GAIADAGGVKALVDLIFKW---------SSGGDGVLERAAGALA 538 (919)
Q Consensus 470 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~L~~lL~~~---------~~~~~~~~~~a~~~L~ 538 (919)
.+|+++.++++.++.++..++.+|..+...-... ..+...|..+.+-+.+... ......+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 3899999999999999999999999999864322 2455666555444444321 1244556677777777
Q ss_pred Hhhc
Q 002459 539 NLAA 542 (919)
Q Consensus 539 ~L~~ 542 (919)
.|..
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 388
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.90 E-value=5.3e+02 Score=26.63 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHhhcCCc--------chHHHHhcChHHHHHHHHhcCC---chHHHHHHHHHHHHHhcCCCCCCcccc
Q 002459 526 GDGVLERAAGALANLAADDK--------CSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNSA 594 (919)
Q Consensus 526 ~~~~~~~a~~~L~~L~~~~~--------~~~~l~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~ 594 (919)
+....+.+...|..|...++ .+-.+.--+.+|.++.-+.+++ .......++..|..++...
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------- 146 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------- 146 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------
Confidence 34455666777777765322 2222222345666666666554 1234467788888888531
Q ss_pred hhhccchHHHHHHHh-CCC---CHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 002459 595 VGQEAGALEALVQLT-RSP---HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWG 670 (919)
Q Consensus 595 ~~~~~~~i~~Lv~lL-~~~---~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~ 670 (919)
....+..++... +.. ..+....++..|+.--. ++.- ...+..|+.+|.. +.+.+|...+.+|..
T Consensus 147 ---~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~~-----~~~l~~Ll~lL~n---~~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 147 ---GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDHE-----FQILTFLLGLLEN---GPPWLRRKTLQILKV 214 (262)
T ss_pred ---CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chhH-----HHHHHHHHHHHhC---CcHHHHHHHHHHHHH
Confidence 112233333332 222 23444445555554211 1111 1245678888876 888999999999999
Q ss_pred cccCcchhhHHHhcCChHHHHHHHccCCH
Q 002459 671 LSVSEANCIAIGREGGVAPLIALARSEAE 699 (919)
Q Consensus 671 l~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 699 (919)
+-...+.+.. ...+.+.++.++++++..
T Consensus 215 ll~~~d~~~~-~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 215 LLPHVDMRSP-HGADLISPLLRLLQTDLW 242 (262)
T ss_pred HhccccCCCC-cchHHHHHHHHHhCCccH
Confidence 9876444433 445578999999987653
No 389
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.90 E-value=3.9e+02 Score=27.30 Aligned_cols=48 Identities=25% Similarity=0.172 Sum_probs=36.9
Q ss_pred HHHHHHcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhc-ChHHHHHHHHh
Q 002459 421 AEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSV-NAKVAKAVAEE 468 (919)
Q Consensus 421 ~~~i~~~g~l~~Lv~lL~~~--~~~~~~~a~~~L~~l~~-~~~~~~~i~~~ 468 (919)
.-..+..|-++.|.+++.++ +.-+|..|+.+|..++. .+..|..+++.
T Consensus 104 ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 104 ILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY 154 (249)
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33456678899999999886 56678999999999987 66667776643
No 390
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.41 E-value=8.1e+02 Score=31.90 Aligned_cols=204 Identities=10% Similarity=-0.011 Sum_probs=128.7
Q ss_pred HHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHH-HHHHHhCcHHHHHHHHhc----CCHHHHHHHH---HHHH
Q 002459 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA-KAVAEEGGINILAVLARS----MNRLVAEEAA---GGLW 494 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~---~~L~ 494 (919)
..++.|.+-.+..-+++.|+.++..|.+++...-...+++ +...+.-++..++.+.+. +++++-.... .-..
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 5677899999999999999999999988888766655553 444444456666666544 2333222111 1122
Q ss_pred hhccCc--cc---------HHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHH
Q 002459 495 NLSVGE--EH---------KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA 563 (919)
Q Consensus 495 ~Ls~~~--~~---------~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll 563 (919)
+++..| ++ ...+++-.++|.+-+++.++..+....++.....+...-.+....+.....+....++.+.
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~ 1593 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFY 1593 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhh
Confidence 333333 11 1244566788888888876554555567777777776666777777777788888888887
Q ss_pred hcCC-chHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCC--CHHHHHH-HHHHHHhhcC
Q 002459 564 RSCK-FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP--HEGVRQE-AAGALWNLSF 629 (919)
Q Consensus 564 ~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~-a~~~L~~Ls~ 629 (919)
.++- +.+.+.....+|.+-... ....+..+...|....+.+++.++ .+-.+.. -...+.++-.
T Consensus 1594 sS~l~~~~S~~LIL~~L~~~Vk~---p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~ 1660 (1758)
T KOG1791|consen 1594 SSPLASEESKRLILATLQKGVKF---PFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWV 1660 (1758)
T ss_pred cchhHHHHHHHHHHHHHHhcCCC---cHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHH
Confidence 7542 133344556666665554 234456677889999999999875 3334443 4444555433
No 391
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=33.77 E-value=8.3 Score=34.61 Aligned_cols=100 Identities=17% Similarity=0.352 Sum_probs=49.0
Q ss_pred hcCCCCCEEEecC-CCCCCHHHHHHHHhhCCCCcEEEecCC-CCCCHHHHhCCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 002459 176 LCCPKLKKLRLSG-IRDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (919)
Q Consensus 176 ~~~~~L~~L~L~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~l~~~~~L~~L~l~~c~~i~~~~l~~l~~~~~ 253 (919)
..|.+|+.+.+.. ...+... ....|++|+.+.+.+. ..+.+..+.++++|+.+.+... +..-+ ...+..++
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~----~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~-~~~F~~~~ 81 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGEN----AFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNN--LKSIG-DNAFSNCT 81 (129)
T ss_dssp TT-TT--EEEETST--EE-TT----TTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETST--T-EE--TTTTTT-T
T ss_pred hCCCCCCEEEECCCeeEeChh----hcccccccccccccccccccceeeeeccccccccccccc--ccccc-cccccccc
Confidence 4577888888873 2222222 2356678999988763 3345566778888999988642 21111 23445688
Q ss_pred CCCEEEeecc--CCCHHHHHHHHhcCcccceecccc
Q 002459 254 KLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALN 287 (919)
Q Consensus 254 ~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~ 287 (919)
+|+.+++..+ .+.... +..+ +|+.+.+..
T Consensus 82 ~l~~i~~~~~~~~i~~~~----f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSNITEIGSSS----FSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT-BEEHTTT----TTT--T--EEE-TT
T ss_pred cccccccCccccEEchhh----hcCC-CceEEEECC
Confidence 8998888653 122222 2245 677777653
No 392
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=33.72 E-value=5.6e+02 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=34.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHH-HHHHHHhc--CCHHHHHHHHHHHHhhccC
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN-ILAVLARS--MNRLVAEEAAGGLWNLSVG 499 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~-~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~ 499 (919)
.++-|.+.|+.+++..+ ..... +++.+.++ -|+-+|.+ +++.+...++..|.+|++.
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~-------------lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P 73 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQ-------------LGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWP 73 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHH-------------HHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCC
Confidence 45567777777665554 33333 33333333 34444433 4788999999999999984
No 393
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.24 E-value=3.7e+02 Score=32.70 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=72.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~ 460 (919)
..+...+.+++.........++..+..-+.-.... ...-++.-.......-..+......+|..++. +++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---------EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---------cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 56888888888887777777777766432211000 11122222222333334555667888889988 665
Q ss_pred HHHHHH-HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 461 VAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 461 ~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
.-..+. +.+....++.++=+++.++.+.|...|.....
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 555544 56779999999999999999999999999986
No 394
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.76 E-value=6.9e+02 Score=27.35 Aligned_cols=132 Identities=15% Similarity=-0.000 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhccCccc-HHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcc-------------hH
Q 002459 483 RLVAEEAAGGLWNLSVGEEH-KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------------SM 548 (919)
Q Consensus 483 ~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~-------------~~ 548 (919)
..-+..|+..|..|+...+. ...+. .+.+..++.-....+..+..-+..|+..+..++..... ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 34566778888888864211 11111 11222222222222456677888899999999864422 12
Q ss_pred HHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHH
Q 002459 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGAL 624 (919)
Q Consensus 549 ~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 624 (919)
.+.....+|-|. -.....+-++..|++.+...-.. -.+.. -.++++.+++.|.+++.-+...|+.++
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~-----l~~~~--l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ-----LPKEQ--LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-----S-HHH--HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh-----CCHHH--HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 232333333332 11223355666777777666542 11222 346899999999999999999888764
No 395
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.76 E-value=1.2e+03 Score=30.99 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=73.3
Q ss_pred HHHHHhCCC---CHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhH
Q 002459 604 ALVQLTRSP---HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIA 680 (919)
Q Consensus 604 ~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 680 (919)
.++..+++. ...+-++=.+++.++....+ ...++.++-++-. +.+...+..+-.+|.+-.........
T Consensus 346 lil~~lks~lr~~k~l~eawiK~I~~~~~~~~-------hkv~Dl~lLlil~--s~~~~~~k~ie~ilkkKI~~g~it~~ 416 (1426)
T PF14631_consen 346 LILDVLKSGLRFSKDLSEAWIKAIESLEDASD-------HKVIDLWLLLILY--SINEDNRKSIEKILKKKIKSGHITEQ 416 (1426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT---------THHHHHHHHHH--HH-HHHHHHHHHHHHHHHTTT-S-HH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhcCCCccc-------cchHHHHHHHHHH--cCCccchHHHHHHHHHHHHhCcccHH
Confidence 444444432 33444444556665542222 2345555555432 13334455566666665543322221
Q ss_pred HH----------hcCChHHHHHH----HccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Q 002459 681 IG----------REGGVAPLIAL----ARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFM 746 (919)
Q Consensus 681 l~----------~~g~v~~L~~l----L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~ 746 (919)
+. =.+..+.++++ +++.++.++..+...-..+-..-+ ...+...+..|+..+.++.+.. ...
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~e-v~~ 492 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQE-VDA 492 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHH-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHH-HHH
Confidence 21 12345555554 477888898888877776643222 1223345668888887776433 357
Q ss_pred HHHHHHHhhCCCCchh
Q 002459 747 AALALAYMFDGRMDEF 762 (919)
Q Consensus 747 A~~~L~~l~~~~~~~~ 762 (919)
|...|..++...++..
T Consensus 493 aL~vL~~L~~~~~~~l 508 (1426)
T PF14631_consen 493 ALDVLCELAEKNPSEL 508 (1426)
T ss_dssp HHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhccHHHH
Confidence 7777887776555443
No 396
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.74 E-value=1.3e+03 Score=30.55 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=70.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhcCC-cc-cHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHh-c
Q 002459 608 LTRSPHEGVRQEAAGALWNLSFD-DR-NREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGR-E 684 (919)
Q Consensus 608 lL~~~~~~~~~~a~~~L~~Ls~~-~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~-~ 684 (919)
++++.++.++..+......+=.. +. .++. ++..|+..+-+ ++......|+.+|..++... ...+.. +
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~s---g~~~ev~~aL~vL~~L~~~~--~~~l~~fa 512 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGS---GNSQEVDAALDVLCELAEKN--PSELQPFA 512 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHH---HHHHHHTH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 56788999988887777665333 22 2333 46778888866 66666678999999998642 222222 2
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHH
Q 002459 685 GGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALA 750 (919)
Q Consensus 685 g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~ 750 (919)
..+..+++.+.+=+..=.+....+|+.|+........-++...--.+-+.|.+.+ +..+...+.+
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~-~~~K~~GIIG 577 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSN-PKYKRIGIIG 577 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCc-HHHHHHhHHH
Confidence 2344455555544444445567778887753322111122222223335555554 5555554444
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.59 E-value=3.3e+02 Score=33.15 Aligned_cols=141 Identities=17% Similarity=0.083 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCccc--
Q 002459 556 VHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRN-- 633 (919)
Q Consensus 556 i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-- 633 (919)
...+...+.+++ ...-...+.++.+++.-..-.+ ++ ...-.+.-..-....-..+......+|..++..+..
T Consensus 443 W~~l~~~~~~~~-~~la~~lL~~~~~l~~l~~~~~--~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 443 WKALLKSLDSDN-PDLAKALLKSLSPLIGLEKFPP--KK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHhhcCCC-hHHHHHHHHHHHHhccccccCC--cc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 455555555444 6667777788877775321111 11 011111111111112234566678888888887433
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHc
Q 002459 634 REAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLA 713 (919)
Q Consensus 634 ~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~ 713 (919)
...+.+.++...++.++-+ ++.++.++|...|..... .+ |-.+.+-++++..-.........+|..+.
T Consensus 517 ~~l~~d~~~~~~i~s~lfs---p~~~l~qaA~~llk~~~d-~~--------~R~e~i~~ll~~~~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 517 KELLSDPDAAQAIWSLLFS---PDDDLYQAAQDLLKQAFD-VD--------GRLEAIQALLQSNFSPTLSAINWSLRQLT 584 (727)
T ss_pred HHHHcCcchhhHHHhheeC---CChHHHHHHHHHHHHHhc-CC--------cHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555567889999999987 999999999999988664 22 23344555565555555566666666665
Q ss_pred C
Q 002459 714 F 714 (919)
Q Consensus 714 ~ 714 (919)
.
T Consensus 585 ~ 585 (727)
T PF12726_consen 585 K 585 (727)
T ss_pred h
Confidence 4
No 398
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=30.89 E-value=1.9e+02 Score=31.05 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcccCcchhhHHHhcC--ChHHHHHHHccC---CHHHHHHHHHHHHHHcCCcccHHHHHH-------cCC
Q 002459 660 LQERAAGALWGLSVSEANCIAIGREG--GVAPLIALARSE---AEDVHETAAGALWNLAFNPGNALRIVE-------EGG 727 (919)
Q Consensus 660 ~~~~A~~~L~~l~~~~~~~~~l~~~g--~v~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~l~~-------~~~ 727 (919)
+|..|...+..+...+.....+...+ .+..|+++++.+ ...++..|+.+|..++........++. .|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 55567777777777777777888776 899999999764 367999999999999986555544442 455
Q ss_pred HHHHHH
Q 002459 728 VPALVH 733 (919)
Q Consensus 728 i~~Lv~ 733 (919)
++.+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555554
No 399
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=30.75 E-value=38 Score=20.32 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.9
Q ss_pred CCCCEEEeeccC
Q 002459 253 PKLVGLDVSRTD 264 (919)
Q Consensus 253 ~~L~~L~l~~~~ 264 (919)
++|++|++++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666666653
No 400
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=30.75 E-value=38 Score=20.32 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=6.9
Q ss_pred CCCCEEEeeccC
Q 002459 253 PKLVGLDVSRTD 264 (919)
Q Consensus 253 ~~L~~L~l~~~~ 264 (919)
++|++|++++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666666653
No 401
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=29.80 E-value=1.7e+03 Score=31.16 Aligned_cols=258 Identities=15% Similarity=0.077 Sum_probs=126.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhccCcccHHHH----H--HhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchH
Q 002459 475 AVLARSMNRLVAEEAAGGLWNLSVGEEHKGAI----A--DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSM 548 (919)
Q Consensus 475 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i----~--~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 548 (919)
...+...+++++..+...+..+-....++... . ....+..+..+-. ...++.++...... +- ...-.
T Consensus 487 ~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~ai--a~~~~~i~~~v~~~---l~--~~~~~ 559 (2341)
T KOG0891|consen 487 DSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAI--ADTDPDIRIRVLSS---LN--ERFDA 559 (2341)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhc--cCCCcchhhhHHhh---hc--cchhh
Confidence 34556678899988877666666543331111 1 1112222222222 12333333222221 11 11112
Q ss_pred HHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHH----H----hCCCCHHHHHHH
Q 002459 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ----L----TRSPHEGVRQEA 620 (919)
Q Consensus 549 ~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~----l----L~~~~~~~~~~a 620 (919)
.+...+.+..++..+.... -..+..+...+++++.. ++ + -+++.+.. . ..+....+.+..
T Consensus 560 ~laQ~~~lr~~~~al~~~~-l~~~~~~~~~ig~l~~~---~~---a-----~vl~~lr~~~l~~~s~l~~sg~~r~~~~~ 627 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDEN-FAIQELATVIIGRLSSY---NP---A-----YVLPSLRKTLLELLTELEFSGMARTKEES 627 (2341)
T ss_pred hhcCchhHHHHHHHhhhhh-hhhHHhHHhhccccccc---cH---H-----HHhHHHHHHHHHHhchhhhcchHHhHHHH
Confidence 3344455555666666554 67777888888887764 22 1 11222221 1 111222222222
Q ss_pred HHHHHhhcCCcccHHHHHHc---CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchh-hHHHhcCChHHHHHHHcc
Q 002459 621 AGALWNLSFDDRNREAIAAA---GGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANC-IAIGREGGVAPLIALARS 696 (919)
Q Consensus 621 ~~~L~~Ls~~~~~~~~l~~~---g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~-~~l~~~g~v~~L~~lL~~ 696 (919)
+.-+..+-.. ....+.. ..+..++..+.+ ++..+...+..++..|+.....- ....+ ..++.+.+.+.+
T Consensus 628 a~~~~~~i~~---~~~~i~~~v~~~l~~~~~~~~~---~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~ 700 (2341)
T KOG0891|consen 628 AKLLCELIIS---SPVLISPYVGPILLVLLPKLQD---PSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQD 700 (2341)
T ss_pred HHHhhHHHHH---HHHHHHhhcCchHHHHHHHHhc---cchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHH
Confidence 2222211111 1111111 123444555554 66677777888888887653311 11122 344555555543
Q ss_pred -CCHHHHHHHHHHHHHHcCCccc--HHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCC
Q 002459 697 -EAEDVHETAAGALWNLAFNPGN--ALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGR 758 (919)
Q Consensus 697 -~~~~v~~~a~~aL~~l~~~~~~--~~~l~~~~~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~ 758 (919)
++..-+..+..++.++...... .+.....-.+..|+..+.......+|..+...++++....
T Consensus 701 ~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 701 QSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred hhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence 4566788899999999763322 1122234456677777777776778888888887665444
No 402
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=29.71 E-value=2.6e+02 Score=30.26 Aligned_cols=140 Identities=11% Similarity=-0.009 Sum_probs=73.1
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhh
Q 002459 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIANLS 456 (919)
Q Consensus 384 Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-------~~~~~~~a~~~L~~l~ 456 (919)
+.+.+.++++..+..|...|.. |.. -...+|.++.++... +-......++.+..|.
T Consensus 183 It~a~~~~~~~~r~~aL~sL~t----D~g-------------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLRT----DPG-------------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhcc----CCC-------------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 4444444556666555555554 111 123466677666542 3445556667777777
Q ss_pred cChHHHHHHHHhCcHHHHHHHHhc----------CCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCC
Q 002459 457 VNAKVAKAVAEEGGINILAVLARS----------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (919)
Q Consensus 457 ~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 526 (919)
.|+...-..-=.--+|.++.++-. ++-.+|+.|+..|..++..-.....-........+.+.+.+ ....
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d-~~~~ 324 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD-PKKP 324 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC-CCCC
Confidence 766443222222246777766521 23468999999999888732111111222234456655543 2233
Q ss_pred HHHHHHHHHHHHHhh
Q 002459 527 DGVLERAAGALANLA 541 (919)
Q Consensus 527 ~~~~~~a~~~L~~L~ 541 (919)
...+..|+..|..+.
T Consensus 325 ~~~~YGAi~GL~~lG 339 (343)
T cd08050 325 LTTHYGAIVGLSALG 339 (343)
T ss_pred cchhhHHHHHHHHhC
Confidence 334555555555543
No 403
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.69 E-value=8.7e+02 Score=27.56 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHHhcCChHHHHHHHcc------CCHHHHHHHHHHHHHHcCCc
Q 002459 643 VEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS------EAEDVHETAAGALWNLAFNP 716 (919)
Q Consensus 643 i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~ 716 (919)
++.++..|-+- ....+....+-.++.||+.+.-.. -++..|..+|.+ .+..+...|+..+..+....
T Consensus 215 l~~~i~vLCsi-~~~~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 215 LSPCIEVLCSI-VNSVSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHHhhH-hcccccchhHHHHHHHHHcCccHH------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 34444444331 123356666777777777654322 146678888832 23567778888888876644
Q ss_pred --ccHHHHHHcC--CHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 002459 717 --GNALRIVEEG--GVPALVHLCSSSGSKMARFMAALALAYMF 755 (919)
Q Consensus 717 --~~~~~l~~~~--~i~~Lv~ll~~~~~~~~~~~A~~~L~~l~ 755 (919)
.....+--.- .++.+...++..+ +.+-.....++..+.
T Consensus 288 ~~~~~~~l~~~~~~vl~sl~~al~~~~-~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 288 GEQGYPSLPFSPSSVLPSLLNALKSNS-PRVDYEILLLINRLL 329 (464)
T ss_pred ccCCcceecccHHHHHHHHHHHHhCCC-CeehHHHHHHHHHHH
Confidence 2222222222 6778888888665 445555555555554
No 404
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=29.17 E-value=8.2e+02 Score=27.25 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=45.8
Q ss_pred HhCcHHHHHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 002459 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (919)
Q Consensus 467 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~ 542 (919)
...-+..|+.+++++|+.-|.....+|.++-..-...+.++.......+.+.+.. ..........+.+++.+..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e--~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYE--TERHNGIAELLEILGSIIN 204 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHT--TS--STHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--cccccCHHHHHHHHHHHHh
Confidence 3345778999999999999999999999987754444444444455666666653 2333333444555555543
No 405
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.86 E-value=2.6e+02 Score=30.11 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHHhc--CHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 002459 484 LVAEEAAGGLWNLSVGEEHKGAIADAG--GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (919)
Q Consensus 484 ~~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l 550 (919)
.+|-.|+..+..+...+.....+...+ .+..|++++.....-...++..|+.+|..++....-...+
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 456667777777777777888888777 8999999997644556789999999999999855433333
No 406
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=26.95 E-value=2.2e+02 Score=25.42 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=43.0
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCc-HHHHHHHHhc--------CCHHHHHHHHHHHHhh
Q 002459 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGG-INILAVLARS--------MNRLVAEEAAGGLWNL 496 (919)
Q Consensus 429 ~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~-i~~Lv~lL~~--------~~~~~~~~a~~~L~~L 496 (919)
+++.|.+-|++.++.|+..++++|..++. .++.+..+.+.-. |..+.++-.. .+..||..|-.++.-|
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 45588888998899999999999999886 5556555554422 3333333221 1344666665555444
No 407
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.77 E-value=5e+02 Score=23.81 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=55.9
Q ss_pred cchHHHHHHHhC-CCCHHHHHHHHHHHHhhcCCcc--cHHHHHHcCCHHH-HHHHHhhcCCCCHHHHHHHHHHHHHccc
Q 002459 599 AGALEALVQLTR-SPHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEA-LVVLAQSCSNASPGLQERAAGALWGLSV 673 (919)
Q Consensus 599 ~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~--~~~~l~~~g~i~~-Lv~ll~~~~~~~~~~~~~A~~~L~~l~~ 673 (919)
..++..|..-+. +.++.++..|+.+|-.+..+.. ....+.....+.. |++++......+..++...+..+..++.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356677777666 4588888889999888888743 3667777788886 8999864122456899999999988874
No 408
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.22 E-value=1.1e+03 Score=27.80 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=105.3
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhc--CCcc----hHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Q 002459 513 KALVDLIFKWSSGGDGVLERAAGALANLAA--DDKC----SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (919)
Q Consensus 513 ~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~--~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~ 586 (919)
|.|.+-| ...+..++-+|+..+.++-- +++. +..+.+ .-...|-.+|+++- +.++..|...+....+.
T Consensus 177 p~l~R~L---~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~-p~VRS~a~~gv~k~~s~- 250 (1005)
T KOG1949|consen 177 PILWRGL---KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPY-PMVRSTAILGVCKITSK- 250 (1005)
T ss_pred HHHHHhh---ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH-
Confidence 3344445 35788999999999988863 4443 223333 33556777888775 88988877777666542
Q ss_pred CCCCcccchhhccchHHHHHHHh-----CCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhhcCCCCHHHH
Q 002459 587 DSNSNNSAVGQEAGALEALVQLT-----RSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQSCSNASPGLQ 661 (919)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~Lv~lL-----~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~ 661 (919)
.+ .. +-...+..|+..+ .....++|......|-.+..++..-..+ +. +++.+-..|.+ .+..+|
T Consensus 251 --fW---e~-iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e~-~Lpal~~~l~D---~se~VR 319 (1005)
T KOG1949|consen 251 --FW---EM-IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-EQ-LLPALRYSLHD---NSEKVR 319 (1005)
T ss_pred --HH---HH-cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-HH-HHHhcchhhhc---cchhHH
Confidence 12 12 2223333333322 2234578888888888887776553332 22 35555556665 788999
Q ss_pred HHHHHHHHHcccCcchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 662 ERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 662 ~~A~~~L~~l~~~~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
.++...|..+-..... .+..---.+.++.-|.+.+..+.+..+..+.+.+.
T Consensus 320 vA~vd~ll~ik~vra~--~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 320 VAFVDMLLKIKAVRAA--KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHHHHHHHhhhhh--hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 9999988876532211 12222233445555555555555555555555543
No 409
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=25.93 E-value=2.7e+02 Score=31.29 Aligned_cols=228 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCC--cccHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCcchhhHHH-hcCChHHHH
Q 002459 615 GVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVVLAQSCSNASPGLQERAAGALWGLSVSEANCIAIG-REGGVAPLI 691 (919)
Q Consensus 615 ~~~~~a~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~l~-~~g~v~~L~ 691 (919)
..|..|+++|..++.. .+.-..+.+. .|+..|.+ .+.--|..|+-++..++.....+..-. -....+.|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S---~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNS---PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcc---hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Q ss_pred HHHccCCHHHHHHHHHHHHHHcC-CcccHHHHHHcCC-----HHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCCchhHhh
Q 002459 692 ALARSEAEDVHETAAGALWNLAF-NPGNALRIVEEGG-----VPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALI 765 (919)
Q Consensus 692 ~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~~~-----i~~Lv~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~ 765 (919)
..|.++.+..=......+..+-. ....-..+.+.|. +|.|-.................--..+.....+.....
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Q ss_pred ccccccccceechhHHHHhhHHHHHHHHHhcCChhHHHHHHhcccchhhHHhhHhhhhhcccccccc-chhhHHHHHHh-
Q 002459 766 GTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQAFATAAASSAPAALTQVTERARIQEAGHLRCS-GAEIGRFITML- 843 (919)
Q Consensus 766 ~~~~~~~~~~v~~~~~~~~~~~~i~~lv~~~~~~~~~~~a~~ala~~~~~~~~~~~~i~~~g~~~~~-~~~i~~l~~~l- 843 (919)
..........-..+..+.-....|..+-.....-..+..|+.|.|..++ |+++-+ ++.|.+|.+-.
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l------------~~lP~KLnPiIrpLMdSIK 322 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVAL------------GGLPKKLNPIIRPLMDSIK 322 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccCCCCccHHHHHHHHHhh
Q ss_pred cCCchHHHhhHHHHHHhh
Q 002459 844 RNPSSVLKSCAAFALLQF 861 (919)
Q Consensus 844 ~~~~~~~~~~aa~al~~~ 861 (919)
+..++.++..+|.++..+
T Consensus 323 ~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 323 REENELLQQRSAESLARL 340 (441)
T ss_pred ccccHHHHHHHHHHHHHH
No 410
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.86 E-value=5.8e+02 Score=31.17 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC---CCCCcccchhhccchHHHHHHHh
Q 002459 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG---DSNSNNSAVGQEAGALEALVQLT 609 (919)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~~~i~~Lv~lL 609 (919)
+.+-+...++.++.++....+++++.+|...|..+++.. .......+.+...+.+..|+..+
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 344456789999999998777899999998888887751 11233555666777777777554
No 411
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.78 E-value=53 Score=34.53 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHhCcHHHHHHHH--hcCCHHHHHHHHHHHHhhccCc-ccHHHHHHh
Q 002459 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADA 509 (919)
Q Consensus 447 ~a~~~L~~l~~-~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~ 509 (919)
+..+.+++++. .+++...+.+.||++.++.-. .+.||-+++....++.+|..+. +|++.+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45678899887 899999999999999888643 5578999999999999999975 777776543
No 412
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=25.72 E-value=1e+03 Score=27.04 Aligned_cols=238 Identities=17% Similarity=0.057 Sum_probs=125.8
Q ss_pred CHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-----------CcchHHHHhcChHHHHHHHHhcCC---chHHHH-HH
Q 002459 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAAD-----------DKCSMEVALAGGVHALVMLARSCK---FEGVQE-QA 575 (919)
Q Consensus 511 ~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~-----------~~~~~~l~~~g~i~~L~~ll~~~~---~~~~~~-~a 575 (919)
.|..+.+++. .++.-.++.++++.|++|-.. +..-..+-+...+...+.++-... ++.+.- ..
T Consensus 98 vir~ltqvis--~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 98 VIRTLTQVIS--FSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHc--CccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 5677777776 467788999999999887421 111123334455666666664321 011211 22
Q ss_pred HHHHHHHhcCCC---CCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcCCcccHHHHHHcCCHHHHHHHHhh
Q 002459 576 ARALANLAAHGD---SNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVVLAQS 652 (919)
Q Consensus 576 ~~~L~~L~~~~~---~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~ 652 (919)
-.++.-++..++ -.+-|. ...+.+|+++ +..++++..++.+-..=+....+...++..-..|+++.-+..
T Consensus 176 kvvl~~ia~vgeS~qyPPVNW-----aalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~ 248 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPPVNW-----AALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV 248 (589)
T ss_pred HHHHHHhhhcCCCCCCCCccH-----HHHhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH
Confidence 223334433221 122222 2334555555 346788888887776666667777777777667777766543
Q ss_pred cCCCCHHHHHHHHHHHHHcccC--cchhhHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHHcCCcccHHHHHH--cCCH
Q 002459 653 CSNASPGLQERAAGALWGLSVS--EANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVE--EGGV 728 (919)
Q Consensus 653 ~~~~~~~~~~~A~~~L~~l~~~--~~~~~~l~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~--~~~i 728 (919)
..+..-..-+..+... ++.-+.+++.-++..+-..-+-.++++...++.-|..-...|.-...... ..++
T Consensus 249 ------~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~tt 322 (589)
T PF11229_consen 249 ------NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETT 322 (589)
T ss_pred ------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 3444444444444332 23335555543333333322345678888887777764443332222222 3456
Q ss_pred HHHHHHHhcC-CC--HHHHHHHHHHHHHhhCCCCchhH
Q 002459 729 PALVHLCSSS-GS--KMARFMAALALAYMFDGRMDEFA 763 (919)
Q Consensus 729 ~~Lv~ll~~~-~~--~~~~~~A~~~L~~l~~~~~~~~~ 763 (919)
..+.+++-+. +. -..-...+.+|..|.++..+.+.
T Consensus 323 ekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~eidrIt 360 (589)
T PF11229_consen 323 EKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDRIT 360 (589)
T ss_pred HHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 6677776433 11 12344456677777665544443
No 413
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.49 E-value=4.2e+02 Score=30.15 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=30.1
Q ss_pred HHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 002459 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (919)
Q Consensus 548 ~~l~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~L~~ 584 (919)
..+.+.+.++.|+.+|....+.+++.+|+..|..+..
T Consensus 56 ewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4556689999999999866668899999988877754
No 414
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=25.21 E-value=5.5e+02 Score=29.52 Aligned_cols=173 Identities=16% Similarity=0.031 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHh--c--------CCchHHHHHHHHHHHHHhcCCCCCCccc
Q 002459 524 SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR--S--------CKFEGVQEQAARALANLAAHGDSNSNNS 593 (919)
Q Consensus 524 ~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~--~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 593 (919)
+.+.++...|-..|..+..+- -+...+..|+.+.. . +-++.+|...+..|..-...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-------- 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSL------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-------- 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH--------
Confidence 345566666777776666541 12345677777666 2 12245555555554432110
Q ss_pred chhhccchHHHHHHHhCCC--CHHHHHHHHHHH---HhhcCC-cccHH----HHHHcCCHHHHHHHHh--hcCCCCHHHH
Q 002459 594 AVGQEAGALEALVQLTRSP--HEGVRQEAAGAL---WNLSFD-DRNRE----AIAAAGGVEALVVLAQ--SCSNASPGLQ 661 (919)
Q Consensus 594 ~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L---~~Ls~~-~~~~~----~l~~~g~i~~Lv~ll~--~~~~~~~~~~ 661 (919)
.-.-...+..+..-+.+. +..++..+...+ .....+ ....- ..+..++.+.+ +.-. .....+...|
T Consensus 314 -a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 314 -ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELR 391 (501)
T ss_pred -HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHH
Confidence 001234444444555555 556666666665 333332 22111 11222333332 1100 1123577899
Q ss_pred HHHHHHHHHcccCcchhhHH-HhcCChHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 002459 662 ERAAGALWGLSVSEANCIAI-GREGGVAPLIALARSEAEDVHETAAGALWNLAF 714 (919)
Q Consensus 662 ~~A~~~L~~l~~~~~~~~~l-~~~g~v~~L~~lL~~~~~~v~~~a~~aL~~l~~ 714 (919)
..|-.+|+.++.....- + -+-+.+..|..-|.+.+++++...-.||..|+.
T Consensus 392 ~~aYe~lG~L~~~~p~l--~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSL--FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHHccCccc--ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999998753321 2 234677888888888889999999999999875
No 415
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=24.94 E-value=38 Score=30.13 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhhCCCCcEEEecC--CCCCCH--HHHhCCCCCCEEeec
Q 002459 171 VKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLD--CLNVDE--VALGNVLSVRFLSVA 235 (919)
Q Consensus 171 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~--~~~l~~--~~l~~~~~L~~L~l~ 235 (919)
+..+...|+.| ...++.-..-.-..+..+...|+.|.. +++. ...+++ ..+.+|++| ..+|+
T Consensus 28 m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l~ 93 (120)
T PF03382_consen 28 MSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDLS 93 (120)
T ss_pred HHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc-CCchh
Confidence 44455556655 222332211111234555566666666 5553 223333 234556666 44454
No 416
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=24.93 E-value=1.7e+02 Score=30.88 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH-------hCCCCCCEEeecCCCCCCHH---HHHHHHhcCCCCCEEEee
Q 002459 192 ICGDAINALAKLCPNLTDIGFLDCLNVDEVAL-------GNVLSVRFLSVAGTSNMKWG---VVSQVWHKLPKLVGLDVS 261 (919)
Q Consensus 192 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l-------~~~~~L~~L~l~~c~~i~~~---~l~~l~~~~~~L~~L~l~ 261 (919)
..++.+..+-.+=|+|+..++.+...+....+ .+-+..+...+.+.. .+|. ++.....-++.|++|++.
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr-~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR-SSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc-CCchhHHHHHHHHhhcchhhheecc
Confidence 33455555555556777777776666665433 233445555555432 2222 223333456677777777
Q ss_pred ccCCCHHHHHHHHhcC
Q 002459 262 RTDVGPITISRLLTSS 277 (919)
Q Consensus 262 ~~~i~~~~l~~l~~~~ 277 (919)
++.||..++..++..+
T Consensus 264 snFItg~gi~a~~~al 279 (353)
T KOG3735|consen 264 SNFITGLGIMALLRAL 279 (353)
T ss_pred ccccccHHHHHHHHHH
Confidence 7777777776665533
No 417
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.83 E-value=2.5e+02 Score=30.24 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=57.6
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChHHHHHHHHhCcHHHHHHHHh-cCCHHHHHHHHHHHHhhcc
Q 002459 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 428 g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~ 498 (919)
..++.|.+.|.+.++.|...|+..+..+.. ....|..|........|..++. +..+.|.+....++.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999986 4557777776767778888887 5678888887777777776
No 418
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.84 E-value=1.1e+03 Score=26.92 Aligned_cols=145 Identities=11% Similarity=-0.038 Sum_probs=81.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHHHHHHHhc--------CCHHHHHHHHHHHHhhccCcc
Q 002459 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS--------MNRLVAEEAAGGLWNLSVGEE 501 (919)
Q Consensus 430 l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~ 501 (919)
.+.+++.+-++++..+..|+..|. .|+.... -+|.++.++.. .|-+...+.+...+.|..++.
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~---TDsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLE---TDSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhc---cCccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 446777777777877777665543 3331111 14455555533 366777888888999998875
Q ss_pred cHHHHHHhcCHHHHHHHHhc-------cCCCCHHHHHHHHHHHHHhhcCCcchHHHHhcChHHHHHHHHhcC-CchHHHH
Q 002459 502 HKGAIADAGGVKALVDLIFK-------WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-KFEGVQE 573 (919)
Q Consensus 502 ~~~~i~~~g~i~~L~~lL~~-------~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~ 573 (919)
..-.-.-...+|.++..+-. ..+....++.-|+..+..++.+-...-.=.....+..+.+.+.+. .+.....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 44333333356666655521 112334678888888888876433322223445566666666544 3334444
Q ss_pred HHHHHHHHHh
Q 002459 574 QAARALANLA 583 (919)
Q Consensus 574 ~a~~~L~~L~ 583 (919)
-++..|..|.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 4555555554
No 419
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=23.31 E-value=4.6e+02 Score=23.67 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=58.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHhhhccCCC--CcccchhhHHH----HHH--cCCHHHHHHHHccCC----HHHHHHHH
Q 002459 382 GLLLSLMQSTQEDVQERAATGLATFVVINDE--NASIDCGRAEA----VMK--DGGIRLLLDLAKSWR----EGLQSEAA 449 (919)
Q Consensus 382 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~----i~~--~g~l~~Lv~lL~~~~----~~~~~~a~ 449 (919)
+.+++++++ ++.........|..+..+-.+ .......++.. +.+ ...++.+.+.+.... ++....++
T Consensus 29 ~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 29 EDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 456666655 355555566666665543322 11111122222 222 233444455555432 77888899
Q ss_pred HHHHHhhcChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHH
Q 002459 450 KAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL 493 (919)
Q Consensus 450 ~~L~~l~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 493 (919)
.++.....-- .-..+.+.+-++.+.+++.+ +.++..|+.+|
T Consensus 108 ~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 108 KCLKSWISWI-PIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 9999876622 22344555678888888854 34477777654
No 420
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=22.21 E-value=2.5e+02 Score=33.98 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHhCc--HHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 002459 444 LQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSMNRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 444 ~~~~a~~~L~~l~~~~~~~~~i~~~g~--i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 498 (919)
.+..|.+.|+.|- || |++|+.+|.+.|.++...|+.+|.+..-
T Consensus 82 ~~~~a~~~l~~m~------------gg~~~~~l~~~~~~~~~~~a~~a~~~l~~~~~ 126 (844)
T TIGR00117 82 SPEKAIELLGTMQ------------GGYNVHPLIDALDSQDANIAPIAAKALSHTLL 126 (844)
T ss_pred CHHHHHHHHhhcc------------CCCCHHHHHHHHhCCCHHHHHHHHHHHhceEE
Confidence 3445666666554 33 8888888888888888888888877655
No 421
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.12 E-value=93 Score=34.43 Aligned_cols=71 Identities=27% Similarity=0.157 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhcCCCCCCcccchhhccchHHHHHHHhCCCCHHHHHHHHHHHHhhcC
Q 002459 556 VHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSF 629 (919)
Q Consensus 556 i~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 629 (919)
+..+++.+.-..+++++..+..++.+++.+ .+..+..+-+...-..++.++-...+.+-+.+..++..+..
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~---~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFC---LENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheec---ccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 334444444445589999999999999986 33333344456666778888888888888888888877764
No 422
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=1.4e+03 Score=27.30 Aligned_cols=133 Identities=16% Similarity=0.061 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHc-c-------CCHHHHHHHHHHHHHhhc---ChHHHHHHHHhCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002459 427 DGGIRLLLDLAK-S-------WREGLQSEAAKAIANLSV---NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWN 495 (919)
Q Consensus 427 ~g~l~~Lv~lL~-~-------~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 495 (919)
.|.++.++..|. + +++.-...|++.+.++.. .+....-+.+.=.++.++-.++++..-++.+|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 488899999983 2 233445567777777653 22222223333345556666788888899999999999
Q ss_pred hccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCcchHHHHhc--ChHHHHHHHHh
Q 002459 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALA--GGVHALVMLAR 564 (919)
Q Consensus 496 Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~l~~~--g~i~~L~~ll~ 564 (919)
++.+ .+..-.-..+.+.....+.+ .+-.++..|+.++.-+-.++.....+.++ +.++.|+.+-.
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~n---n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKN---NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcc
Confidence 9543 22222222234445556643 55667778888887777666555554443 34444444433
No 423
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.59 E-value=4.5e+02 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=25.6
Q ss_pred HHcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 002459 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (919)
Q Consensus 425 ~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~ 456 (919)
.....-..+..+|.++++++|..|+.+|...-
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34445557889999999999999999998753
No 424
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.97 E-value=9.1e+02 Score=24.71 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChHHHHHHHH--hCcHHHHHHHHhcC--CHHHHHHHHHHHHhhcc
Q 002459 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE--EGGINILAVLARSM--NRLVAEEAAGGLWNLSV 498 (919)
Q Consensus 423 ~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~ 498 (919)
++.+..++++++++++.++.-+- ..++... .++.-..+.. .|-++.|.+++.++ +.-+|..|+.+|..+..
T Consensus 68 q~re~~A~~~li~l~~~~~~~~~----~l~GD~~-tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 68 QFREERALPPLIRLFSQDDDFLE----DLFGDFI-TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred HHhhhhhHHHHHHHHcCCcchHH----HHHcchh-HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 35777899999999987654211 1122211 1222222222 45599999999876 56689999999999988
Q ss_pred C-cccHHHHHHh
Q 002459 499 G-EEHKGAIADA 509 (919)
Q Consensus 499 ~-~~~~~~i~~~ 509 (919)
. +..|+.+++.
T Consensus 143 ~~~~~Re~vi~~ 154 (249)
T PF06685_consen 143 EGPISREEVIQY 154 (249)
T ss_pred cCCCCHHHHHHH
Confidence 5 4567766553
No 425
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=20.69 E-value=78 Score=19.41 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=8.6
Q ss_pred CCCCEEEeeccCC
Q 002459 253 PKLVGLDVSRTDV 265 (919)
Q Consensus 253 ~~L~~L~l~~~~i 265 (919)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4677777777654
No 426
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=20.31 E-value=4.9e+02 Score=31.87 Aligned_cols=128 Identities=11% Similarity=0.121 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChHHHHHHHHhCcHHH
Q 002459 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINI 473 (919)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~ 473 (919)
++..+.-.|++++..++. .....+|.+++-|.-. ...+|.+.+-++..++ .+..+.-..-||.
T Consensus 947 vra~~vvTlakmcLah~~------------LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C----~~YTam~d~YiP~ 1010 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDR------------LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDIC----SSYTAMTDRYIPM 1010 (1529)
T ss_pred HHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhH----HHHHHHHHHhhHH
Confidence 466677777877755442 1124677777777643 3334433333333333 2333333446899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhccCcccHHHHHHhcCHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 002459 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544 (919)
Q Consensus 474 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~~~a~~~L~~L~~~~ 544 (919)
+..-|.++++-+|..+.-.|.+|... -+++.+|.- +++++...-+.+++++..|-..+..+....
T Consensus 1011 I~~~L~Dp~~iVRrqt~ilL~rLLq~-----~~vKw~G~L-f~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1011 IAASLCDPSVIVRRQTIILLARLLQF-----GIVKWNGEL-FIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhh-----hhhhcchhh-HHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999863 344444422 223332223578888888888887776543
No 427
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=20.23 E-value=57 Score=34.34 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=38.5
Q ss_pred cCcCCCCHHHHHHHHcCCCHHH--------HHHHHhhcHhHHHHh----cCCCCccccccC
Q 002459 38 VDWTSLPDDTVIQLMSCLNYRD--------RASLSSTCRTWRALG----ASPCLWSSLDLR 86 (919)
Q Consensus 38 ~~~~~LP~eil~~If~~L~~~d--------~~~~~~vck~w~~l~----~~~~lw~~l~l~ 86 (919)
..|.+||.+.+..+..+....| .+.++.||+.|+... ..|..|..++|.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~ 103 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFP 103 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchh
Confidence 6799999999999999887433 357999999999974 356667666654
No 428
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=20.10 E-value=4.6e+02 Score=27.16 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhhccCCCCcccchhhHHHHHHcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 002459 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (919)
Q Consensus 381 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 457 (919)
+.-|.++|+.++++.+ ....+++. ..+++...+|.|+.. .+++.+...+++.|.+|..
T Consensus 15 LkdL~r~lr~dd~~~~-~v~r~lg~----------------~~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 15 LKDLKRFLRRDDEDQR-DVRRQLGE----------------WNIVQKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHhCcchH-HHHHHHHH----------------hchhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 5667777766665554 45555554 123444444444332 2467888889999988875
Done!