BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002460
         (919 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
           Complex With A Selective Darpin
 pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
           Complex With A Selective Darpin
          Length = 167

 Score = 33.1 bits (74), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 506 LMLKQGKQMHAYAMKSGFELDLCVSSG---ILDMYVKCGAMVDAQSIFNDIPAPDDVAWT 562
           ++LK G  ++A+ M     L L    G   I+++ +K GA V+AQ  F            
Sbjct: 98  VLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF----------GK 147

Query: 563 TMISGCVDNGEEDLALS 579
           T     +DNG EDLA S
Sbjct: 148 TAFDISIDNGNEDLAKS 164


>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
           Ot3 Translation Initiation Factor Eif-2b
 pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
           Ot3 Translation Initiation Factor Eif-2b
          Length = 276

 Score = 31.2 bits (69), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 367 VIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADS 426
           VI+ +S  +   ++      R  +F +  +L  SS   EGLHL++++    I+ + + D 
Sbjct: 112 VIITHSFSSTVLEIIRTAKERKKRFKV--ILTESSPDYEGLHLARELEFSGIEFEVITD- 168

Query: 427 FVSTALIDVYCRNGSMAEAEYLFENKDGF 455
               A + ++CR  S+A        KDG+
Sbjct: 169 ----AQMGLFCREASIAIVGADMITKDGY 193


>pdb|1L2L|A Chain A, Crystal Structure Of Adp-Dependent Glucokinase From A
           Pyrococcus Horikoshii
          Length = 457

 Score = 30.0 bits (66), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 821 EMKRKNVKKDPADLIFAKVEGLIKRIKEGG 850
           E+  + + KDPAD I A +EGL+K IKE G
Sbjct: 310 ELAERIISKDPADPI-AVIEGLLKLIKETG 338


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,737,525
Number of Sequences: 62578
Number of extensions: 1028560
Number of successful extensions: 2102
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 3
length of query: 919
length of database: 14,973,337
effective HSP length: 108
effective length of query: 811
effective length of database: 8,214,913
effective search space: 6662294443
effective search space used: 6662294443
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)