Query 002460
Match_columns 919
No_of_seqs 762 out of 5129
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 00:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-131 1E-135 1194.5 85.4 763 116-917 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-107 5E-112 963.7 65.3 566 295-919 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-90 5.5E-95 838.7 69.8 645 47-732 80-728 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.7E-69 3.6E-74 641.1 54.5 474 116-728 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 3.4E-69 7.4E-74 637.9 56.3 529 84-763 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.8E-68 1.7E-72 626.4 57.0 534 51-695 368-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-35 2.8E-40 369.6 81.8 754 52-827 55-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-35 1E-39 364.6 77.2 745 54-824 126-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-22 2.3E-27 253.5 67.5 641 56-828 31-744 (1157)
10 PRK11447 cellulose synthase su 99.9 6.3E-22 1.4E-26 246.6 60.9 620 95-827 35-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 8.8E-20 1.9E-24 216.4 62.5 255 557-821 476-736 (987)
12 PRK09782 bacteriophage N4 rece 99.9 9E-19 2E-23 207.9 62.4 574 171-825 56-706 (987)
13 KOG4626 O-linked N-acetylgluco 99.8 1.2E-18 2.7E-23 181.9 29.0 379 425-814 115-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.8 7.3E-19 1.6E-23 183.6 26.6 379 434-824 90-484 (966)
15 PRK11788 tetratricopeptide rep 99.8 4.2E-18 9.2E-23 189.4 27.6 290 536-832 44-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-16 4.7E-21 185.1 42.3 389 429-825 130-571 (615)
17 KOG2002 TPR-containing nuclear 99.8 1E-13 2.2E-18 153.8 56.0 688 89-828 42-801 (1018)
18 PRK11788 tetratricopeptide rep 99.8 1.7E-16 3.7E-21 176.5 30.8 290 464-790 42-346 (389)
19 PRK15174 Vi polysaccharide exp 99.8 1E-15 2.2E-20 178.5 38.1 352 437-797 16-387 (656)
20 PRK10049 pgaA outer membrane p 99.8 4.2E-15 9.2E-20 177.3 42.2 394 424-825 13-456 (765)
21 KOG4318 Bicoid mRNA stability 99.8 2.3E-14 5E-19 156.6 43.0 281 528-827 492-810 (1088)
22 KOG4318 Bicoid mRNA stability 99.8 5.9E-15 1.3E-19 161.1 36.2 645 144-855 10-761 (1088)
23 PRK10049 pgaA outer membrane p 99.7 1.4E-14 2.9E-19 173.0 42.5 370 425-800 48-465 (765)
24 PRK15174 Vi polysaccharide exp 99.7 5.9E-15 1.3E-19 172.2 36.5 325 492-826 42-382 (656)
25 TIGR00990 3a0801s09 mitochondr 99.7 1.1E-13 2.3E-18 162.5 45.3 435 300-824 130-596 (615)
26 KOG2002 TPR-containing nuclear 99.7 1.9E-12 4.2E-17 143.9 51.2 407 404-823 283-743 (1018)
27 KOG4422 Uncharacterized conser 99.7 6.2E-14 1.4E-18 141.1 36.0 448 119-658 116-591 (625)
28 PRK14574 hmsH outer membrane p 99.7 1.6E-13 3.6E-18 160.1 41.3 417 405-826 48-514 (822)
29 PRK14574 hmsH outer membrane p 99.7 1.9E-12 4.1E-17 151.3 43.8 428 304-799 41-521 (822)
30 KOG4422 Uncharacterized conser 99.7 2.8E-12 6E-17 129.4 38.3 229 57-360 120-384 (625)
31 PF14432 DYW_deaminase: DYW fa 99.6 4E-16 8.7E-21 135.4 4.1 63 841-909 22-116 (116)
32 KOG2003 TPR repeat-containing 99.6 1.2E-11 2.5E-16 125.5 31.9 277 536-820 428-717 (840)
33 KOG2076 RNA polymerase III tra 99.6 6.1E-10 1.3E-14 123.6 47.3 614 98-820 150-890 (895)
34 KOG0495 HAT repeat protein [RN 99.5 2.4E-08 5.3E-13 106.7 54.0 427 298-824 441-879 (913)
35 KOG0495 HAT repeat protein [RN 99.5 4E-09 8.6E-14 112.6 46.3 365 434-805 414-796 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 7E-14 1.5E-18 147.0 11.0 254 565-823 15-275 (280)
37 KOG2076 RNA polymerase III tra 99.5 1.4E-09 3.1E-14 120.8 43.0 41 208-248 153-196 (895)
38 KOG1126 DNA-binding cell divis 99.4 5.7E-12 1.2E-16 135.3 20.2 271 542-822 334-617 (638)
39 KOG0547 Translocase of outer m 99.4 2.7E-10 5.9E-15 117.5 31.2 382 430-822 119-563 (606)
40 KOG1155 Anaphase-promoting com 99.4 7.9E-10 1.7E-14 113.5 31.1 356 422-823 160-534 (559)
41 PRK10747 putative protoheme IX 99.4 2.4E-10 5.3E-15 125.8 27.8 244 569-822 129-387 (398)
42 KOG1126 DNA-binding cell divis 99.4 7.7E-11 1.7E-15 126.8 22.1 246 572-826 333-587 (638)
43 PRK10747 putative protoheme IX 99.3 5.4E-10 1.2E-14 123.1 28.3 254 503-792 129-391 (398)
44 TIGR00540 hemY_coli hemY prote 99.3 2.1E-09 4.6E-14 119.1 31.8 288 469-788 96-396 (409)
45 KOG2003 TPR repeat-containing 99.3 1.3E-09 2.9E-14 110.8 27.0 137 121-262 200-346 (840)
46 KOG1915 Cell cycle control pro 99.3 1.3E-07 2.8E-12 97.6 41.1 428 295-790 105-584 (677)
47 KOG1155 Anaphase-promoting com 99.3 1.8E-08 3.9E-13 103.8 34.9 254 565-824 234-494 (559)
48 KOG4162 Predicted calmodulin-b 99.3 2.7E-07 5.8E-12 101.4 45.5 471 308-824 238-782 (799)
49 TIGR00540 hemY_coli hemY prote 99.3 1.5E-09 3.3E-14 120.3 29.0 282 437-756 95-396 (409)
50 KOG0985 Vesicle coat protein c 99.3 4.6E-07 1E-11 101.3 46.8 187 643-852 1090-1295(1666)
51 PF13429 TPR_15: Tetratricopep 99.3 3.2E-11 6.9E-16 126.9 12.5 213 505-722 57-276 (280)
52 TIGR02521 type_IV_pilW type IV 99.2 6.4E-10 1.4E-14 113.8 21.0 196 628-824 31-231 (234)
53 KOG1915 Cell cycle control pro 99.2 1.9E-07 4.2E-12 96.3 37.5 397 427-832 74-507 (677)
54 PF13041 PPR_2: PPR repeat fam 99.2 1.2E-11 2.5E-16 90.8 5.0 50 295-344 1-50 (50)
55 KOG1173 Anaphase-promoting com 99.2 7.2E-08 1.6E-12 102.1 32.7 273 563-845 249-535 (611)
56 PF13041 PPR_2: PPR repeat fam 99.2 5.1E-11 1.1E-15 87.4 6.7 50 556-605 1-50 (50)
57 KOG2047 mRNA splicing factor [ 99.2 1.5E-05 3.2E-10 85.9 49.0 433 195-722 103-614 (835)
58 COG2956 Predicted N-acetylgluc 99.2 4.4E-08 9.5E-13 96.5 27.3 267 470-771 48-324 (389)
59 KOG1174 Anaphase-promoting com 99.2 3.9E-07 8.5E-12 92.6 34.7 402 425-847 96-519 (564)
60 KOG1840 Kinesin light chain [C 99.2 6.1E-09 1.3E-13 113.9 23.8 230 594-823 200-477 (508)
61 KOG0985 Vesicle coat protein c 99.2 9.3E-06 2E-10 91.3 48.1 128 541-681 1089-1216(1666)
62 KOG3616 Selective LIM binding 99.1 5.7E-06 1.2E-10 89.7 43.6 309 535-877 740-1076(1636)
63 KOG2047 mRNA splicing factor [ 99.1 1.8E-05 3.8E-10 85.4 46.1 306 427-784 388-716 (835)
64 KOG0547 Translocase of outer m 99.1 1.5E-07 3.3E-12 97.7 29.3 351 460-832 118-535 (606)
65 COG3071 HemY Uncharacterized e 99.1 2.8E-08 6E-13 101.1 23.4 266 570-844 96-372 (400)
66 COG3071 HemY Uncharacterized e 99.1 1.2E-07 2.7E-12 96.5 27.9 123 470-593 97-222 (400)
67 PRK12370 invasion protein regu 99.1 1.5E-08 3.2E-13 116.8 24.6 242 574-825 277-535 (553)
68 KOG3785 Uncharacterized conser 99.1 1.5E-06 3.3E-11 86.5 33.7 345 441-837 166-526 (557)
69 PRK11189 lipoprotein NlpI; Pro 99.0 3.1E-08 6.6E-13 104.4 22.3 211 607-826 40-266 (296)
70 KOG1173 Anaphase-promoting com 99.0 1.1E-06 2.5E-11 93.3 32.3 285 457-772 244-532 (611)
71 TIGR02521 type_IV_pilW type IV 99.0 7.1E-08 1.5E-12 98.5 22.3 201 558-793 31-234 (234)
72 KOG4162 Predicted calmodulin-b 99.0 5.5E-06 1.2E-10 91.4 37.0 306 474-797 461-789 (799)
73 COG2956 Predicted N-acetylgluc 99.0 4.8E-07 1E-11 89.4 25.4 303 506-859 49-370 (389)
74 KOG1129 TPR repeat-containing 99.0 4.2E-08 9E-13 96.4 17.6 229 562-825 227-458 (478)
75 PRK12370 invasion protein regu 98.9 5.2E-08 1.1E-12 112.4 21.5 210 607-824 275-501 (553)
76 COG3063 PilF Tfp pilus assembl 98.9 6.1E-08 1.3E-12 91.4 17.2 160 663-827 39-204 (250)
77 KOG1840 Kinesin light chain [C 98.9 4.1E-07 8.8E-12 99.8 25.7 235 528-790 200-478 (508)
78 KOG1127 TPR repeat-containing 98.9 0.00014 3.1E-09 82.5 43.6 357 443-807 800-1191(1238)
79 KOG2376 Signal recognition par 98.9 1.2E-05 2.5E-10 86.2 32.8 364 437-818 90-513 (652)
80 PRK11189 lipoprotein NlpI; Pro 98.9 6.5E-07 1.4E-11 94.4 24.0 216 572-795 40-269 (296)
81 KOG3616 Selective LIM binding 98.8 2.6E-05 5.7E-10 84.8 34.7 191 602-819 741-931 (1636)
82 KOG1174 Anaphase-promoting com 98.8 7.5E-06 1.6E-10 83.5 28.4 255 562-823 198-465 (564)
83 KOG1129 TPR repeat-containing 98.8 2.7E-07 5.8E-12 90.8 16.0 226 526-756 222-455 (478)
84 KOG3785 Uncharacterized conser 98.7 6.5E-05 1.4E-09 75.2 30.5 403 405-825 36-490 (557)
85 KOG0548 Molecular co-chaperone 98.7 9.8E-06 2.1E-10 86.0 25.5 385 435-844 11-471 (539)
86 KOG2376 Signal recognition par 98.7 0.00017 3.7E-09 77.5 34.5 261 463-757 230-518 (652)
87 KOG1156 N-terminal acetyltrans 98.6 0.0002 4.4E-09 77.8 34.6 318 456-785 142-505 (700)
88 KOG1156 N-terminal acetyltrans 98.6 0.00058 1.3E-08 74.4 37.6 390 428-827 43-470 (700)
89 KOG4340 Uncharacterized conser 98.6 2.4E-05 5.1E-10 76.5 24.5 380 429-821 13-439 (459)
90 cd05804 StaR_like StaR_like; a 98.6 2.3E-05 5.1E-10 85.8 28.4 294 530-826 9-337 (355)
91 KOG1127 TPR repeat-containing 98.6 0.00016 3.5E-09 82.1 34.0 559 180-819 477-1098(1238)
92 KOG0624 dsRNA-activated protei 98.6 2.3E-05 5.1E-10 78.1 24.4 189 604-798 166-377 (504)
93 PF12854 PPR_1: PPR repeat 98.6 4.9E-08 1.1E-12 64.0 3.8 33 189-221 2-34 (34)
94 COG3063 PilF Tfp pilus assembl 98.6 1.2E-05 2.6E-10 76.2 20.8 162 631-795 72-240 (250)
95 PF12569 NARP1: NMDA receptor- 98.6 2.6E-05 5.6E-10 87.0 26.5 257 534-827 11-293 (517)
96 KOG1125 TPR repeat-containing 98.6 1.5E-06 3.3E-11 92.7 15.9 203 641-846 332-555 (579)
97 PF04733 Coatomer_E: Coatomer 98.5 2.3E-06 4.9E-11 88.8 16.1 152 636-794 110-268 (290)
98 PF12569 NARP1: NMDA receptor- 98.5 3.7E-05 8E-10 85.7 26.4 246 500-756 12-288 (517)
99 PRK10370 formate-dependent nit 98.5 1.1E-05 2.4E-10 78.9 19.2 120 707-828 52-176 (198)
100 TIGR03302 OM_YfiO outer membra 98.5 6.4E-06 1.4E-10 84.2 17.4 178 628-825 33-232 (235)
101 PRK15359 type III secretion sy 98.5 4.2E-06 9.2E-11 77.4 14.3 105 699-806 29-136 (144)
102 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.3E-12 61.7 3.2 33 83-115 2-34 (34)
103 PF04733 Coatomer_E: Coatomer 98.4 2E-06 4.4E-11 89.2 13.0 175 642-825 80-265 (290)
104 KOG3617 WD40 and TPR repeat-co 98.4 0.0061 1.3E-07 68.2 41.8 29 798-826 1332-1360(1416)
105 KOG3617 WD40 and TPR repeat-co 98.4 0.00046 9.9E-09 76.6 30.6 157 502-686 922-1107(1416)
106 PRK04841 transcriptional regul 98.4 0.00068 1.5E-08 84.6 37.3 190 431-620 346-558 (903)
107 KOG1914 mRNA cleavage and poly 98.4 0.0024 5.2E-08 68.3 34.1 172 574-747 347-527 (656)
108 KOG1070 rRNA processing protei 98.4 2.2E-05 4.8E-10 91.7 20.7 213 626-843 1456-1681(1710)
109 PRK15179 Vi polysaccharide bio 98.4 3.7E-05 8E-10 89.2 22.5 131 691-824 83-216 (694)
110 KOG4340 Uncharacterized conser 98.3 0.00026 5.6E-09 69.5 23.6 272 526-820 43-334 (459)
111 PRK15359 type III secretion sy 98.3 1.2E-05 2.6E-10 74.4 14.0 99 726-826 22-122 (144)
112 PRK15363 pathogenicity island 98.3 9.3E-06 2E-10 73.5 12.6 118 730-847 35-154 (157)
113 cd05804 StaR_like StaR_like; a 98.3 0.00082 1.8E-08 73.6 30.5 266 558-826 6-294 (355)
114 PLN02789 farnesyltranstransfer 98.3 9.1E-05 2E-09 78.0 20.6 210 560-809 39-268 (320)
115 KOG0624 dsRNA-activated protei 98.2 0.0058 1.3E-07 61.5 30.6 301 430-756 42-367 (504)
116 COG5010 TadD Flp pilus assembl 98.2 8.2E-05 1.8E-09 72.4 16.9 156 691-851 63-220 (257)
117 KOG1125 TPR repeat-containing 98.2 4.8E-05 1E-09 81.6 16.3 212 506-722 299-526 (579)
118 TIGR02552 LcrH_SycD type III s 98.2 3E-05 6.6E-10 71.3 13.0 102 725-826 11-115 (135)
119 TIGR00756 PPR pentatricopeptid 98.2 2.6E-06 5.7E-11 56.9 4.3 35 226-260 1-35 (35)
120 PRK10370 formate-dependent nit 98.2 0.00015 3.2E-09 71.1 17.9 153 635-800 23-182 (198)
121 KOG1128 Uncharacterized conser 98.2 4.3E-05 9.4E-10 84.0 15.3 208 599-825 404-616 (777)
122 KOG1128 Uncharacterized conser 98.1 5.1E-05 1.1E-09 83.5 15.6 217 522-756 393-613 (777)
123 PRK15179 Vi polysaccharide bio 98.1 0.00019 4.1E-09 83.4 21.0 137 658-799 85-225 (694)
124 COG4783 Putative Zn-dependent 98.1 0.00027 5.8E-09 74.8 19.9 144 661-826 308-455 (484)
125 TIGR03302 OM_YfiO outer membra 98.1 0.00013 2.8E-09 74.6 16.6 182 591-793 31-234 (235)
126 PRK04841 transcriptional regul 98.0 0.0044 9.6E-08 77.3 32.0 186 435-620 383-600 (903)
127 KOG0548 Molecular co-chaperone 98.0 0.011 2.4E-07 63.5 29.5 401 404-819 15-483 (539)
128 COG5010 TadD Flp pilus assembl 98.0 0.00038 8.2E-09 67.9 17.0 153 663-819 70-225 (257)
129 TIGR00756 PPR pentatricopeptid 98.0 9.5E-06 2.1E-10 54.1 4.5 35 120-159 1-35 (35)
130 KOG1070 rRNA processing protei 98.0 0.00071 1.5E-08 79.7 21.5 221 490-711 1455-1688(1710)
131 PF13812 PPR_3: Pentatricopept 98.0 9.7E-06 2.1E-10 53.7 4.0 34 225-258 1-34 (34)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 9E-05 2E-09 79.4 13.2 120 698-822 173-294 (395)
133 PLN02789 farnesyltranstransfer 98.0 0.00053 1.1E-08 72.3 18.7 183 637-824 46-249 (320)
134 PRK14720 transcript cleavage f 97.9 0.00072 1.6E-08 79.3 20.3 234 556-829 29-288 (906)
135 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.3E-10 52.7 3.7 34 297-330 1-34 (34)
136 TIGR02552 LcrH_SycD type III s 97.9 0.00036 7.8E-09 64.1 13.8 114 681-798 5-121 (135)
137 KOG3060 Uncharacterized conser 97.9 0.00071 1.5E-08 65.3 15.5 179 641-823 25-218 (289)
138 COG4783 Putative Zn-dependent 97.8 0.00098 2.1E-08 70.7 17.6 121 703-825 315-437 (484)
139 KOG3060 Uncharacterized conser 97.8 0.0038 8.3E-08 60.5 19.7 161 637-800 61-229 (289)
140 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5.1E-10 50.5 3.2 31 226-256 1-31 (31)
141 KOG3081 Vesicle coat complex C 97.8 0.0083 1.8E-07 58.7 21.3 142 635-815 115-260 (299)
142 PLN03088 SGT1, suppressor of 97.7 0.00018 3.8E-09 77.8 10.2 105 738-846 10-117 (356)
143 KOG2053 Mitochondrial inherita 97.7 0.18 4E-06 57.9 41.4 161 596-760 439-609 (932)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00075 1.6E-08 72.5 14.6 123 633-760 174-298 (395)
145 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 60.3 15.0 113 672-787 24-143 (145)
146 KOG0553 TPR repeat-containing 97.6 0.00026 5.7E-09 70.3 9.5 94 739-836 90-185 (304)
147 PF13414 TPR_11: TPR repeat; P 97.6 0.00012 2.6E-09 57.9 5.8 64 761-824 2-66 (69)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0011 2.3E-08 61.7 13.1 123 697-821 15-143 (145)
149 cd00189 TPR Tetratricopeptide 97.6 0.00045 9.8E-09 58.3 9.9 92 733-824 3-96 (100)
150 PF01535 PPR: PPR repeat; Int 97.6 5.3E-05 1.2E-09 48.8 2.9 31 298-328 1-31 (31)
151 PF04840 Vps16_C: Vps16, C-ter 97.6 0.12 2.7E-06 54.3 29.4 108 632-756 181-288 (319)
152 PF12895 Apc3: Anaphase-promot 97.6 6.4E-05 1.4E-09 62.2 3.9 78 743-821 2-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0011 2.3E-08 59.2 10.9 91 735-825 7-105 (119)
154 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 58.0 12.0 105 696-800 4-114 (119)
155 KOG3081 Vesicle coat complex C 97.5 0.005 1.1E-07 60.1 15.4 141 680-827 94-238 (299)
156 PRK14720 transcript cleavage f 97.5 0.022 4.8E-07 67.2 23.7 30 456-485 30-59 (906)
157 PRK15331 chaperone protein Sic 97.5 0.0024 5.2E-08 58.4 12.4 108 737-848 44-153 (165)
158 PF13432 TPR_16: Tetratricopep 97.4 0.00024 5.3E-09 55.3 5.3 57 768-824 3-59 (65)
159 COG3898 Uncharacterized membra 97.4 0.12 2.5E-06 53.5 24.9 240 570-823 132-390 (531)
160 PRK02603 photosystem I assembl 97.4 0.0042 9.2E-08 59.6 14.1 128 660-811 36-166 (172)
161 PRK10153 DNA-binding transcrip 97.4 0.0036 7.8E-08 70.7 15.5 43 656-700 334-382 (517)
162 COG4235 Cytochrome c biogenesi 97.4 0.0044 9.4E-08 62.3 14.1 106 727-832 152-263 (287)
163 PF14559 TPR_19: Tetratricopep 97.4 0.0004 8.7E-09 54.7 5.6 52 773-824 2-53 (68)
164 PF13431 TPR_17: Tetratricopep 97.3 0.00016 3.5E-09 47.3 2.2 32 785-816 2-33 (34)
165 KOG0553 TPR repeat-containing 97.3 0.0021 4.5E-08 64.1 10.6 88 669-761 91-181 (304)
166 CHL00033 ycf3 photosystem I as 97.3 0.0018 3.9E-08 61.9 10.0 92 730-821 35-138 (168)
167 PRK02603 photosystem I assembl 97.2 0.0023 5E-08 61.4 10.6 83 730-812 35-122 (172)
168 PF07079 DUF1347: Protein of u 97.2 0.39 8.4E-06 51.0 33.7 72 748-820 442-519 (549)
169 KOG0550 Molecular chaperone (D 97.2 0.007 1.5E-07 62.7 14.1 178 667-854 177-375 (486)
170 PF08579 RPM2: Mitochondrial r 97.2 0.0013 2.9E-08 55.2 7.4 88 228-344 28-116 (120)
171 PF13432 TPR_16: Tetratricopep 97.2 0.00083 1.8E-08 52.3 6.0 61 736-796 3-65 (65)
172 PF13371 TPR_9: Tetratricopept 97.2 0.00087 1.9E-08 53.6 6.3 57 770-826 3-59 (73)
173 PLN03088 SGT1, suppressor of 97.2 0.0046 1E-07 66.9 13.7 103 703-808 11-116 (356)
174 PF05843 Suf: Suppressor of fo 97.2 0.0078 1.7E-07 62.7 14.4 134 661-797 3-142 (280)
175 PF04840 Vps16_C: Vps16, C-ter 97.2 0.28 6.2E-06 51.7 25.8 106 529-650 179-284 (319)
176 cd00189 TPR Tetratricopeptide 97.1 0.0047 1E-07 51.9 10.5 61 733-793 37-99 (100)
177 COG4700 Uncharacterized protei 97.1 0.07 1.5E-06 49.3 17.8 128 690-820 85-217 (251)
178 COG4700 Uncharacterized protei 97.1 0.03 6.5E-07 51.6 14.7 109 718-826 77-190 (251)
179 COG3898 Uncharacterized membra 97.0 0.32 7E-06 50.5 23.2 267 560-839 84-368 (531)
180 PRK10153 DNA-binding transcrip 97.0 0.013 2.8E-07 66.3 14.4 131 690-824 333-481 (517)
181 CHL00033 ycf3 photosystem I as 96.9 0.028 6.2E-07 53.6 14.9 79 660-741 36-117 (168)
182 PF06239 ECSIT: Evolutionarily 96.9 0.003 6.5E-08 60.2 7.7 124 214-360 34-167 (228)
183 PF14938 SNAP: Soluble NSF att 96.9 0.052 1.1E-06 56.8 17.7 77 634-722 100-183 (282)
184 PF14559 TPR_19: Tetratricopep 96.9 0.0012 2.6E-08 51.9 4.1 60 743-802 4-65 (68)
185 PF10037 MRP-S27: Mitochondria 96.8 0.0071 1.5E-07 65.4 10.5 117 192-345 64-186 (429)
186 PRK10803 tol-pal system protei 96.8 0.0092 2E-07 60.9 10.4 88 737-824 150-245 (263)
187 PF12895 Apc3: Anaphase-promot 96.8 0.0038 8.2E-08 51.5 6.4 80 672-755 2-83 (84)
188 PF03704 BTAD: Bacterial trans 96.8 0.021 4.5E-07 53.1 12.2 115 704-832 16-137 (146)
189 KOG2796 Uncharacterized conser 96.7 0.079 1.7E-06 51.7 15.3 168 530-699 139-324 (366)
190 PF10037 MRP-S27: Mitochondria 96.7 0.024 5.2E-07 61.4 13.4 120 487-606 61-186 (429)
191 PF13414 TPR_11: TPR repeat; P 96.6 0.0049 1.1E-07 48.6 5.9 65 729-793 2-69 (69)
192 KOG2280 Vacuolar assembly/sort 96.6 1.8 3.9E-05 49.2 28.8 108 632-755 688-795 (829)
193 PRK15363 pathogenicity island 96.6 0.026 5.6E-07 51.5 10.9 89 633-723 40-132 (157)
194 PF13428 TPR_14: Tetratricopep 96.5 0.0039 8.4E-08 43.8 4.1 42 763-804 2-43 (44)
195 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.0084 1.8E-07 64.1 8.2 63 762-824 75-140 (453)
196 PF08579 RPM2: Mitochondrial r 96.5 0.028 6.1E-07 47.5 9.5 79 562-640 29-116 (120)
197 KOG2053 Mitochondrial inherita 96.5 2.5 5.4E-05 49.1 43.1 419 296-753 76-564 (932)
198 PF13371 TPR_9: Tetratricopept 96.5 0.0086 1.9E-07 47.8 6.4 65 738-802 3-69 (73)
199 KOG1130 Predicted G-alpha GTPa 96.5 0.014 3E-07 60.4 9.0 128 696-823 197-342 (639)
200 PF13281 DUF4071: Domain of un 96.3 0.27 5.8E-06 52.3 18.1 158 634-794 147-337 (374)
201 PF12688 TPR_5: Tetratrico pep 96.3 0.064 1.4E-06 47.2 11.4 91 665-755 7-100 (120)
202 KOG1538 Uncharacterized conser 96.2 0.57 1.2E-05 51.7 19.8 179 414-656 623-801 (1081)
203 PF06239 ECSIT: Evolutionarily 96.2 0.031 6.7E-07 53.5 9.3 96 649-745 35-153 (228)
204 PF12688 TPR_5: Tetratrico pep 96.2 0.054 1.2E-06 47.7 10.3 82 738-819 9-98 (120)
205 PF14938 SNAP: Soluble NSF att 96.2 0.13 2.8E-06 53.8 15.2 103 696-798 116-232 (282)
206 KOG1538 Uncharacterized conser 96.2 1.4 2.9E-05 48.9 22.2 125 634-790 709-845 (1081)
207 KOG2041 WD40 repeat protein [G 96.1 2 4.4E-05 48.1 23.5 191 607-829 748-956 (1189)
208 PF05843 Suf: Suppressor of fo 96.1 0.037 7.9E-07 57.7 10.5 129 695-825 2-136 (280)
209 COG0457 NrfG FOG: TPR repeat [ 96.1 1.7 3.8E-05 43.3 24.7 191 629-823 60-263 (291)
210 PF04184 ST7: ST7 protein; In 96.1 0.46 1E-05 51.4 18.0 49 671-722 180-228 (539)
211 PRK10866 outer membrane biogen 96.0 0.25 5.3E-06 50.2 15.5 171 634-823 38-239 (243)
212 PRK10803 tol-pal system protei 96.0 0.1 2.2E-06 53.4 12.5 101 697-797 146-252 (263)
213 KOG1914 mRNA cleavage and poly 95.9 3.4 7.3E-05 45.3 39.5 209 610-821 310-535 (656)
214 PF07079 DUF1347: Protein of u 95.9 3.1 6.8E-05 44.5 33.3 28 458-485 299-326 (549)
215 KOG0550 Molecular chaperone (D 95.9 1.5 3.2E-05 46.3 20.0 20 567-586 178-197 (486)
216 PRK11906 transcriptional regul 95.8 0.099 2.1E-06 56.3 12.1 156 660-819 252-430 (458)
217 PF13512 TPR_18: Tetratricopep 95.7 0.2 4.4E-06 45.0 11.5 109 739-854 19-137 (142)
218 KOG0543 FKBP-type peptidyl-pro 95.6 0.058 1.2E-06 56.6 9.0 81 763-847 258-339 (397)
219 PRK10866 outer membrane biogen 95.5 1.9 4.2E-05 43.7 19.5 59 564-622 38-98 (243)
220 KOG1130 Predicted G-alpha GTPa 95.3 0.07 1.5E-06 55.4 8.5 128 595-722 197-343 (639)
221 PF13424 TPR_12: Tetratricopep 95.3 0.024 5.3E-07 45.9 4.1 60 764-823 7-73 (78)
222 KOG3941 Intermediate in Toll s 95.2 0.1 2.3E-06 51.4 8.8 127 211-359 51-186 (406)
223 KOG1920 IkappaB kinase complex 95.2 2 4.3E-05 51.5 20.5 158 541-757 894-1053(1265)
224 KOG2610 Uncharacterized conser 95.2 0.76 1.6E-05 46.8 14.9 147 672-821 116-272 (491)
225 PF13424 TPR_12: Tetratricopep 95.2 0.034 7.3E-07 45.0 4.8 60 732-791 7-75 (78)
226 COG0457 NrfG FOG: TPR repeat [ 95.1 3.9 8.4E-05 40.7 24.6 195 596-794 62-268 (291)
227 PRK11906 transcriptional regul 95.1 2.8 6.1E-05 45.5 19.9 120 709-832 273-404 (458)
228 KOG2796 Uncharacterized conser 94.9 0.82 1.8E-05 45.0 13.7 137 661-825 179-315 (366)
229 KOG2041 WD40 repeat protein [G 94.9 8.7 0.00019 43.4 24.1 152 439-617 747-902 (1189)
230 KOG4555 TPR repeat-containing 94.8 0.23 4.9E-06 43.1 8.6 89 739-827 52-146 (175)
231 KOG2280 Vacuolar assembly/sort 94.8 10 0.00022 43.5 25.1 108 528-650 685-792 (829)
232 PF12921 ATP13: Mitochondrial 94.6 0.3 6.4E-06 43.5 9.6 51 725-775 47-101 (126)
233 PF12921 ATP13: Mitochondrial 94.5 0.26 5.7E-06 43.9 8.8 98 628-741 2-99 (126)
234 PF07719 TPR_2: Tetratricopept 94.4 0.11 2.4E-06 33.8 4.9 33 763-795 2-34 (34)
235 PF13525 YfiO: Outer membrane 94.3 2 4.4E-05 42.3 15.8 63 665-729 11-77 (203)
236 PF03704 BTAD: Bacterial trans 94.3 0.23 5.1E-06 46.0 8.7 69 663-733 66-139 (146)
237 PF09205 DUF1955: Domain of un 94.2 1.7 3.8E-05 38.0 12.7 140 670-828 13-152 (161)
238 PF04053 Coatomer_WDAD: Coatom 94.2 0.33 7.2E-06 53.7 10.9 132 668-826 270-403 (443)
239 KOG0543 FKBP-type peptidyl-pro 94.2 0.39 8.6E-06 50.5 10.7 94 731-824 258-354 (397)
240 PF13525 YfiO: Outer membrane 94.0 4.3 9.3E-05 40.0 17.5 57 565-621 12-70 (203)
241 PF00515 TPR_1: Tetratricopept 94.0 0.11 2.4E-06 33.8 4.2 33 763-795 2-34 (34)
242 COG4235 Cytochrome c biogenesi 93.7 0.63 1.4E-05 47.2 10.7 94 658-756 155-253 (287)
243 PF08631 SPO22: Meiosis protei 93.6 10 0.00023 39.4 20.3 97 596-693 87-191 (278)
244 KOG4234 TPR repeat-containing 93.6 0.41 8.9E-06 45.0 8.3 89 738-826 103-198 (271)
245 COG5107 RNA14 Pre-mRNA 3'-end 93.5 12 0.00027 40.1 25.7 87 290-379 35-121 (660)
246 PLN03098 LPA1 LOW PSII ACCUMUL 93.4 0.37 8.1E-06 52.0 9.1 62 730-791 75-141 (453)
247 KOG1585 Protein required for f 93.1 8.4 0.00018 37.9 16.5 87 732-819 152-250 (308)
248 PF04097 Nic96: Nup93/Nic96; 93.1 11 0.00025 44.1 21.4 48 298-346 112-159 (613)
249 PF04184 ST7: ST7 protein; In 92.9 7.2 0.00016 42.7 17.4 17 781-797 365-381 (539)
250 COG3118 Thioredoxin domain-con 92.8 4.1 8.9E-05 41.4 14.7 117 703-822 143-262 (304)
251 smart00299 CLH Clathrin heavy 92.6 3.3 7.2E-05 37.8 13.3 63 697-772 72-135 (140)
252 smart00299 CLH Clathrin heavy 92.5 5.4 0.00012 36.5 14.6 127 661-807 9-136 (140)
253 PF04053 Coatomer_WDAD: Coatom 92.5 3.7 8.1E-05 45.6 15.5 103 534-653 325-427 (443)
254 KOG3941 Intermediate in Toll s 92.4 0.89 1.9E-05 45.2 9.3 109 546-654 53-185 (406)
255 COG4105 ComL DNA uptake lipopr 92.4 13 0.00028 37.2 18.0 64 665-730 40-107 (254)
256 COG5107 RNA14 Pre-mRNA 3'-end 92.4 18 0.0004 38.9 29.3 143 629-776 398-549 (660)
257 KOG1258 mRNA processing protei 92.3 23 0.00049 39.9 25.9 182 627-811 296-490 (577)
258 KOG1941 Acetylcholine receptor 92.0 1 2.3E-05 46.3 9.5 224 568-791 16-275 (518)
259 PF09613 HrpB1_HrpK: Bacterial 92.0 4.3 9.3E-05 37.4 12.6 97 700-800 16-114 (160)
260 PF13512 TPR_18: Tetratricopep 91.8 4.9 0.00011 36.3 12.5 92 705-796 21-133 (142)
261 PF06552 TOM20_plant: Plant sp 91.7 0.51 1.1E-05 44.0 6.5 62 778-839 51-119 (186)
262 COG1729 Uncharacterized protei 91.2 2 4.4E-05 43.1 10.5 84 671-756 153-241 (262)
263 PF04097 Nic96: Nup93/Nic96; 91.1 5.6 0.00012 46.6 15.9 211 430-655 115-354 (613)
264 PF13281 DUF4071: Domain of un 91.1 12 0.00026 40.1 16.8 72 532-603 146-227 (374)
265 KOG2066 Vacuolar assembly/sort 91.1 36 0.00077 39.6 23.5 76 426-504 392-467 (846)
266 COG1729 Uncharacterized protei 90.9 2.1 4.6E-05 42.9 10.3 102 696-798 144-251 (262)
267 KOG1586 Protein required for f 90.7 18 0.00039 35.5 16.4 15 776-790 168-182 (288)
268 KOG4555 TPR repeat-containing 90.7 1.8 3.8E-05 37.8 8.1 88 703-793 52-146 (175)
269 PF13176 TPR_7: Tetratricopept 90.4 0.35 7.5E-06 32.1 3.1 26 798-823 1-26 (36)
270 PF10300 DUF3808: Protein of u 90.4 8.4 0.00018 43.5 16.0 157 664-823 193-374 (468)
271 COG3118 Thioredoxin domain-con 90.3 15 0.00033 37.5 15.6 147 667-816 142-292 (304)
272 PF07035 Mic1: Colon cancer-as 90.2 15 0.00032 34.4 14.6 36 317-352 14-49 (167)
273 PRK15331 chaperone protein Sic 90.2 4.9 0.00011 37.2 11.2 84 638-722 47-133 (165)
274 PF00637 Clathrin: Region in C 90.0 0.13 2.7E-06 47.6 0.9 87 164-253 12-98 (143)
275 PF10300 DUF3808: Protein of u 89.9 2.7 5.8E-05 47.4 11.5 142 680-825 178-334 (468)
276 PF13181 TPR_8: Tetratricopept 89.6 0.69 1.5E-05 29.9 4.1 31 764-794 3-33 (34)
277 KOG0890 Protein kinase of the 89.4 50 0.0011 43.6 22.4 63 762-826 1670-1732(2382)
278 PRK09687 putative lyase; Provi 89.4 29 0.00064 36.0 23.0 80 627-709 141-221 (280)
279 COG4785 NlpI Lipoprotein NlpI, 89.4 6.7 0.00014 37.8 11.5 161 659-826 99-267 (297)
280 KOG2610 Uncharacterized conser 89.2 3.3 7.3E-05 42.4 10.1 113 706-820 115-233 (491)
281 PF02259 FAT: FAT domain; Int 89.1 22 0.00047 38.5 18.0 149 657-808 144-304 (352)
282 COG3629 DnrI DNA-binding trans 89.1 2.6 5.7E-05 43.0 9.5 77 764-842 155-236 (280)
283 KOG1941 Acetylcholine receptor 88.8 11 0.00024 39.3 13.5 219 538-756 17-272 (518)
284 TIGR02561 HrpB1_HrpK type III 88.7 3.3 7.2E-05 37.4 8.7 55 774-828 22-76 (153)
285 PF13170 DUF4003: Protein of u 88.6 7.1 0.00015 40.8 12.7 65 675-740 159-227 (297)
286 PRK11619 lytic murein transgly 88.4 59 0.0013 38.3 29.5 126 672-804 254-384 (644)
287 COG4455 ImpE Protein of avirul 88.2 5.6 0.00012 38.3 10.3 85 771-855 10-97 (273)
288 PF08631 SPO22: Meiosis protei 88.1 36 0.00078 35.4 21.6 87 405-492 101-192 (278)
289 KOG1920 IkappaB kinase complex 88.0 48 0.001 40.5 19.8 119 631-760 911-1029(1265)
290 PRK10941 hypothetical protein; 87.4 3.8 8.3E-05 42.0 9.6 63 764-826 183-245 (269)
291 PF09613 HrpB1_HrpK: Bacterial 87.3 2.9 6.3E-05 38.5 7.7 70 742-811 22-93 (160)
292 KOG4642 Chaperone-dependent E3 87.2 5.1 0.00011 39.2 9.5 97 744-840 24-124 (284)
293 KOG2114 Vacuolar assembly/sort 87.0 70 0.0015 37.6 27.3 75 736-811 711-786 (933)
294 COG3947 Response regulator con 86.7 39 0.00085 34.4 15.9 55 769-823 286-340 (361)
295 PF13176 TPR_7: Tetratricopept 86.6 1.2 2.7E-05 29.4 3.8 28 764-791 1-28 (36)
296 PRK12798 chemotaxis protein; R 86.1 55 0.0012 35.4 20.7 204 641-848 125-346 (421)
297 COG2976 Uncharacterized protei 86.0 24 0.00051 33.7 13.0 114 677-794 70-191 (207)
298 PF02259 FAT: FAT domain; Int 85.8 16 0.00034 39.6 14.4 65 760-824 144-212 (352)
299 PF13170 DUF4003: Protein of u 85.5 15 0.00032 38.5 13.0 90 544-635 120-224 (297)
300 COG3629 DnrI DNA-binding trans 84.8 5.5 0.00012 40.7 9.1 73 665-739 159-236 (280)
301 KOG4648 Uncharacterized conser 84.7 2.5 5.5E-05 43.2 6.5 108 701-815 104-214 (536)
302 PF09205 DUF1955: Domain of un 84.2 29 0.00064 30.7 14.1 62 663-726 90-151 (161)
303 PF13428 TPR_14: Tetratricopep 84.0 2 4.4E-05 29.9 4.1 33 661-695 3-35 (44)
304 KOG1585 Protein required for f 83.3 51 0.0011 32.7 17.6 157 631-810 94-266 (308)
305 COG4649 Uncharacterized protei 82.3 44 0.00095 31.3 15.7 121 669-790 68-195 (221)
306 TIGR02561 HrpB1_HrpK type III 81.7 35 0.00077 31.1 11.7 84 705-791 21-106 (153)
307 COG4649 Uncharacterized protei 81.6 18 0.0004 33.6 10.0 56 437-492 69-129 (221)
308 PF14853 Fis1_TPR_C: Fis1 C-te 81.4 3.4 7.4E-05 30.2 4.4 34 767-800 6-39 (53)
309 PF00515 TPR_1: Tetratricopept 81.3 2 4.4E-05 27.7 3.1 31 661-693 3-33 (34)
310 COG4105 ComL DNA uptake lipopr 81.1 64 0.0014 32.4 19.3 171 635-824 41-232 (254)
311 PRK09687 putative lyase; Provi 81.1 74 0.0016 33.1 24.9 131 563-705 147-278 (280)
312 KOG2114 Vacuolar assembly/sort 80.2 1.3E+02 0.0029 35.5 26.2 184 53-249 283-487 (933)
313 PF07719 TPR_2: Tetratricopept 80.0 1.9 4.1E-05 27.7 2.6 28 797-824 2-29 (34)
314 KOG1308 Hsp70-interacting prot 79.5 1.9 4.1E-05 44.4 3.5 91 742-832 126-218 (377)
315 PF11207 DUF2989: Protein of u 79.5 8.2 0.00018 37.1 7.5 76 740-816 117-198 (203)
316 PF10602 RPN7: 26S proteasome 79.4 29 0.00062 33.2 11.4 91 664-756 41-139 (177)
317 KOG4570 Uncharacterized conser 79.3 5.4 0.00012 40.6 6.5 103 81-189 57-165 (418)
318 PF10345 Cohesin_load: Cohesin 78.2 1.5E+02 0.0033 35.0 35.6 48 775-822 547-603 (608)
319 KOG0292 Vesicle coat complex C 77.7 3.5 7.6E-05 47.7 5.2 129 700-855 626-759 (1202)
320 PF07721 TPR_4: Tetratricopept 77.6 2.2 4.7E-05 25.7 2.1 24 797-820 2-25 (26)
321 KOG0376 Serine-threonine phosp 77.0 3.6 7.8E-05 44.6 4.9 87 737-823 11-99 (476)
322 KOG2396 HAT (Half-A-TPR) repea 76.9 20 0.00043 39.3 10.2 101 746-850 87-199 (568)
323 KOG1258 mRNA processing protei 76.8 1.4E+02 0.003 33.9 26.4 120 695-816 298-420 (577)
324 KOG4570 Uncharacterized conser 76.7 12 0.00025 38.3 7.9 101 622-723 58-164 (418)
325 PRK15180 Vi polysaccharide bio 76.7 13 0.00027 40.2 8.6 123 669-795 299-424 (831)
326 PRK13800 putative oxidoreducta 76.5 2.1E+02 0.0045 35.7 21.6 151 626-789 696-847 (897)
327 TIGR02508 type_III_yscG type I 75.6 47 0.001 27.8 9.6 62 533-597 45-106 (115)
328 PF13374 TPR_10: Tetratricopep 75.5 3.6 7.7E-05 27.9 3.1 27 797-823 3-29 (42)
329 COG4785 NlpI Lipoprotein NlpI, 75.4 8.3 0.00018 37.2 6.2 50 669-720 75-125 (297)
330 KOG4648 Uncharacterized conser 74.9 9.1 0.0002 39.4 6.8 87 666-763 104-199 (536)
331 smart00028 TPR Tetratricopepti 74.5 5.5 0.00012 24.4 3.7 29 765-793 4-32 (34)
332 PF10602 RPN7: 26S proteasome 74.4 29 0.00062 33.2 9.9 16 640-655 125-140 (177)
333 PF13181 TPR_8: Tetratricopept 74.3 4.2 9.2E-05 26.1 3.0 28 797-824 2-29 (34)
334 PF13929 mRNA_stabil: mRNA sta 74.2 1E+02 0.0022 31.7 13.9 122 91-218 134-262 (292)
335 TIGR02508 type_III_yscG type I 73.8 21 0.00044 29.9 7.2 79 174-255 20-98 (115)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 73.8 19 0.00041 29.9 7.0 40 753-792 33-72 (103)
337 PF02284 COX5A: Cytochrome c o 72.5 21 0.00046 30.0 7.1 41 753-793 36-76 (108)
338 PF13174 TPR_6: Tetratricopept 71.9 3.7 8.1E-05 26.0 2.3 28 798-825 2-29 (33)
339 COG2909 MalT ATP-dependent tra 71.8 2.3E+02 0.0049 34.0 23.7 215 538-756 426-685 (894)
340 PF13174 TPR_6: Tetratricopept 71.7 8.3 0.00018 24.3 4.0 28 767-794 5-32 (33)
341 PF10345 Cohesin_load: Cohesin 71.3 2.2E+02 0.0047 33.6 30.1 29 296-324 222-252 (608)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 70.8 27 0.00058 29.1 7.2 62 675-738 23-84 (103)
343 PF09986 DUF2225: Uncharacteri 70.6 22 0.00048 35.2 8.4 67 762-828 118-197 (214)
344 PF13431 TPR_17: Tetratricopep 70.4 4.5 9.8E-05 26.3 2.4 21 730-750 13-33 (34)
345 PF07035 Mic1: Colon cancer-as 70.1 98 0.0021 29.1 15.3 34 416-449 19-52 (167)
346 PRK15180 Vi polysaccharide bio 69.6 34 0.00075 37.1 9.8 142 638-784 299-450 (831)
347 PF00637 Clathrin: Region in C 68.4 1.9 4.2E-05 39.6 0.5 53 600-652 14-66 (143)
348 PF02284 COX5A: Cytochrome c o 68.2 27 0.00059 29.4 6.8 61 677-739 28-88 (108)
349 KOG1550 Extracellular protein 67.8 77 0.0017 36.8 13.4 49 777-827 379-428 (552)
350 COG2976 Uncharacterized protei 67.7 1.2E+02 0.0026 29.2 13.1 98 728-826 82-189 (207)
351 PF13374 TPR_10: Tetratricopep 67.6 12 0.00027 25.1 4.4 29 763-791 3-31 (42)
352 KOG0545 Aryl-hydrocarbon recep 67.6 38 0.00082 33.5 8.8 72 773-848 241-314 (329)
353 KOG0276 Vesicle coat complex C 66.6 63 0.0014 36.5 11.2 145 641-819 599-744 (794)
354 PF13929 mRNA_stabil: mRNA sta 66.2 1.7E+02 0.0036 30.3 14.2 56 524-579 199-259 (292)
355 PF04190 DUF410: Protein of un 66.2 1.6E+02 0.0035 30.2 17.5 84 422-520 86-169 (260)
356 KOG1464 COP9 signalosome, subu 66.0 1.5E+02 0.0033 29.8 12.7 184 643-826 42-262 (440)
357 PF14561 TPR_20: Tetratricopep 64.2 27 0.00059 28.9 6.4 44 782-825 8-51 (90)
358 KOG4234 TPR repeat-containing 64.1 87 0.0019 30.1 10.2 58 738-795 142-201 (271)
359 PF07721 TPR_4: Tetratricopept 63.8 13 0.00027 22.4 3.3 21 734-754 5-25 (26)
360 COG1747 Uncharacterized N-term 63.8 2.5E+02 0.0053 31.4 20.4 171 625-802 63-245 (711)
361 KOG3824 Huntingtin interacting 63.6 19 0.00041 36.6 6.2 61 741-801 127-189 (472)
362 KOG1811 Predicted Zn2+-binding 63.4 1.5E+02 0.0031 33.5 13.1 99 731-832 557-656 (1141)
363 KOG3364 Membrane protein invol 63.1 59 0.0013 29.1 8.3 46 778-823 51-98 (149)
364 COG4455 ImpE Protein of avirul 62.9 1.6E+02 0.0035 28.9 12.9 124 661-797 3-140 (273)
365 KOG4279 Serine/threonine prote 62.8 1.3E+02 0.0028 35.0 12.9 181 560-794 203-398 (1226)
366 PF09670 Cas_Cas02710: CRISPR- 62.8 1E+02 0.0023 33.6 12.5 120 670-790 142-269 (379)
367 PF04910 Tcf25: Transcriptiona 62.5 99 0.0021 33.5 12.1 55 769-823 110-166 (360)
368 KOG2063 Vacuolar assembly/sort 62.3 3.6E+02 0.0079 32.9 24.1 57 429-485 310-374 (877)
369 KOG1550 Extracellular protein 58.2 3.5E+02 0.0077 31.4 20.4 44 777-823 490-536 (552)
370 KOG1586 Protein required for f 57.9 2E+02 0.0044 28.6 15.4 100 708-807 128-242 (288)
371 PF04910 Tcf25: Transcriptiona 57.6 2.8E+02 0.0061 30.1 18.9 96 693-793 99-224 (360)
372 PF11207 DUF2989: Protein of u 57.4 75 0.0016 30.8 8.8 73 676-749 123-197 (203)
373 COG2912 Uncharacterized conser 57.1 69 0.0015 32.6 8.9 60 766-825 185-244 (269)
374 KOG0686 COP9 signalosome, subu 56.3 2.8E+02 0.0061 30.0 13.3 181 630-848 152-353 (466)
375 PF04190 DUF410: Protein of un 55.7 2.5E+02 0.0054 28.8 14.3 81 626-723 88-170 (260)
376 PF07163 Pex26: Pex26 protein; 55.7 1E+02 0.0023 31.4 9.7 88 666-756 90-184 (309)
377 PF09477 Type_III_YscG: Bacter 55.2 89 0.0019 26.7 7.7 82 171-255 18-99 (116)
378 PF07720 TPR_3: Tetratricopept 54.8 33 0.00072 22.7 4.3 32 764-795 3-36 (36)
379 KOG4507 Uncharacterized conser 54.0 43 0.00092 37.5 7.3 21 230-250 217-238 (886)
380 smart00386 HAT HAT (Half-A-TPR 53.4 24 0.00052 21.9 3.6 29 776-804 1-29 (33)
381 PF10579 Rapsyn_N: Rapsyn N-te 53.1 33 0.00072 27.3 4.7 47 706-752 18-65 (80)
382 PF13762 MNE1: Mitochondrial s 52.6 51 0.0011 30.1 6.5 78 90-172 41-128 (145)
383 PRK10941 hypothetical protein; 52.5 81 0.0018 32.5 8.9 68 735-802 186-255 (269)
384 KOG0276 Vesicle coat complex C 52.3 1.1E+02 0.0023 34.8 10.0 98 437-551 648-745 (794)
385 KOG0991 Replication factor C, 52.1 1.6E+02 0.0035 29.2 10.0 141 93-262 135-275 (333)
386 KOG4814 Uncharacterized conser 51.9 1.5E+02 0.0032 33.9 11.0 90 742-831 366-463 (872)
387 KOG2066 Vacuolar assembly/sort 51.1 4.9E+02 0.011 30.9 21.5 34 608-650 636-669 (846)
388 PF13762 MNE1: Mitochondrial s 50.4 1.8E+02 0.0038 26.7 9.6 90 416-505 27-128 (145)
389 PF12862 Apc5: Anaphase-promot 49.0 44 0.00095 27.9 5.4 53 772-824 8-69 (94)
390 PRK13342 recombination factor 49.0 4.1E+02 0.009 29.5 14.7 102 590-709 173-280 (413)
391 TIGR03504 FimV_Cterm FimV C-te 48.7 26 0.00056 24.5 3.2 27 800-826 3-29 (44)
392 PRK13342 recombination factor 48.7 3.6E+02 0.0079 29.9 14.2 48 560-607 229-279 (413)
393 PF11768 DUF3312: Protein of u 48.0 1.2E+02 0.0026 34.1 9.8 23 633-655 413-435 (545)
394 PF10579 Rapsyn_N: Rapsyn N-te 47.5 48 0.001 26.5 4.8 47 671-717 18-66 (80)
395 PF09477 Type_III_YscG: Bacter 46.8 1.9E+02 0.0041 24.8 9.2 86 507-596 21-106 (116)
396 PF10366 Vps39_1: Vacuolar sor 46.5 1.2E+02 0.0027 26.1 7.8 27 299-325 41-67 (108)
397 KOG4507 Uncharacterized conser 46.1 71 0.0015 35.9 7.5 131 692-825 569-705 (886)
398 PHA02875 ankyrin repeat protei 45.9 4.5E+02 0.0098 29.0 15.0 78 468-553 10-91 (413)
399 PF06552 TOM20_plant: Plant sp 44.7 65 0.0014 30.5 6.1 62 675-741 51-124 (186)
400 KOG0551 Hsp90 co-chaperone CNS 43.7 1.4E+02 0.0029 31.4 8.6 90 731-820 82-177 (390)
401 COG5159 RPN6 26S proteasome re 43.4 3.8E+02 0.0083 27.5 13.8 51 667-717 11-68 (421)
402 PF11846 DUF3366: Domain of un 43.1 74 0.0016 30.9 6.8 31 726-756 140-170 (193)
403 PF14853 Fis1_TPR_C: Fis1 C-te 42.5 70 0.0015 23.4 4.8 34 665-700 7-40 (53)
404 PHA02537 M terminase endonucle 42.4 2.8E+02 0.006 27.7 10.5 106 669-794 93-210 (230)
405 PF10366 Vps39_1: Vacuolar sor 41.7 1.6E+02 0.0035 25.4 7.7 28 226-253 40-67 (108)
406 PF07163 Pex26: Pex26 protein; 41.3 2.5E+02 0.0054 28.8 9.8 85 565-651 90-181 (309)
407 PF14863 Alkyl_sulf_dimr: Alky 41.0 1.1E+02 0.0024 27.9 6.9 68 747-817 58-125 (141)
408 PF06957 COPI_C: Coatomer (COP 41.0 92 0.002 34.2 7.5 38 757-794 293-332 (422)
409 TIGR02710 CRISPR-associated pr 40.9 3.1E+02 0.0067 29.8 11.3 11 808-818 258-268 (380)
410 KOG3824 Huntingtin interacting 40.9 36 0.00078 34.7 4.1 53 705-760 127-181 (472)
411 PF00244 14-3-3: 14-3-3 protei 40.8 2.3E+02 0.005 28.5 10.0 161 665-826 7-199 (236)
412 PF00244 14-3-3: 14-3-3 protei 40.7 3.9E+02 0.0085 26.9 11.6 56 564-619 7-63 (236)
413 KOG3364 Membrane protein invol 40.3 2.8E+02 0.0061 25.0 10.1 72 727-798 29-107 (149)
414 PRK14015 pepN aminopeptidase N 39.7 7.5E+02 0.016 30.6 15.8 149 665-817 688-845 (875)
415 PF11846 DUF3366: Domain of un 39.5 98 0.0021 30.0 7.1 37 757-793 139-175 (193)
416 TIGR03504 FimV_Cterm FimV C-te 39.5 62 0.0013 22.6 3.9 24 564-587 5-28 (44)
417 KOG4642 Chaperone-dependent E3 39.4 2.8E+02 0.0062 27.7 9.6 78 641-720 23-104 (284)
418 TIGR02414 pepN_proteo aminopep 39.3 7.3E+02 0.016 30.7 15.5 151 663-817 676-835 (863)
419 KOG3807 Predicted membrane pro 39.1 2.1E+02 0.0045 29.8 9.1 164 604-798 227-398 (556)
420 PF14561 TPR_20: Tetratricopep 38.2 2E+02 0.0042 23.9 7.5 62 761-822 21-85 (90)
421 PRK11619 lytic murein transgly 37.8 7.6E+02 0.016 29.3 38.2 247 571-830 254-510 (644)
422 KOG1524 WD40 repeat-containing 37.8 2.8E+02 0.0062 30.9 10.3 52 736-790 579-630 (737)
423 PHA02875 ankyrin repeat protei 37.4 6E+02 0.013 28.0 19.6 172 65-259 11-195 (413)
424 COG4976 Predicted methyltransf 36.6 51 0.0011 32.4 4.2 58 740-797 5-64 (287)
425 PF11525 CopK: Copper resistan 35.9 13 0.00028 28.2 0.2 15 900-914 13-27 (73)
426 PRK13800 putative oxidoreducta 35.7 9.7E+02 0.021 29.9 24.9 254 447-722 625-880 (897)
427 KOG4077 Cytochrome c oxidase, 35.1 2.2E+02 0.0048 25.2 7.2 60 677-738 67-126 (149)
428 KOG0890 Protein kinase of the 34.4 1.4E+03 0.03 31.4 34.3 107 696-806 1672-1799(2382)
429 cd08819 CARD_MDA5_2 Caspase ac 33.7 1.4E+02 0.0031 24.4 5.7 39 640-679 48-86 (88)
430 PF11663 Toxin_YhaV: Toxin wit 33.1 50 0.0011 29.4 3.3 23 237-259 107-129 (140)
431 KOG4521 Nuclear pore complex, 33.0 1E+03 0.022 30.0 14.4 120 697-818 986-1124(1480)
432 KOG2471 TPR repeat-containing 32.7 6.3E+02 0.014 28.2 11.7 58 772-832 216-273 (696)
433 PF09670 Cas_Cas02710: CRISPR- 32.7 4E+02 0.0086 29.2 11.0 52 704-757 141-196 (379)
434 KOG4077 Cytochrome c oxidase, 32.5 2E+02 0.0044 25.4 6.6 44 748-791 70-113 (149)
435 PF12968 DUF3856: Domain of Un 32.0 3.2E+02 0.007 24.0 7.7 57 765-821 58-125 (144)
436 PRK13184 pknD serine/threonine 31.9 1.1E+03 0.024 29.4 19.1 286 533-824 481-832 (932)
437 PF13934 ELYS: Nuclear pore co 31.8 5.3E+02 0.012 25.7 12.8 32 742-773 152-183 (226)
438 COG4976 Predicted methyltransf 31.7 61 0.0013 31.9 3.9 53 773-825 6-58 (287)
439 KOG2581 26S proteasome regulat 31.6 6.6E+02 0.014 27.4 11.5 93 703-795 178-280 (493)
440 cd00280 TRFH Telomeric Repeat 31.0 1.4E+02 0.0029 28.5 5.8 49 768-817 117-165 (200)
441 PRK10564 maltose regulon perip 31.0 69 0.0015 33.1 4.4 44 223-266 254-298 (303)
442 PF11663 Toxin_YhaV: Toxin wit 30.8 58 0.0013 29.0 3.3 29 139-169 110-138 (140)
443 cd08819 CARD_MDA5_2 Caspase ac 30.3 2.4E+02 0.0051 23.2 6.3 66 179-246 22-87 (88)
444 PRK10564 maltose regulon perip 29.5 66 0.0014 33.2 4.0 37 300-336 260-296 (303)
445 PF12862 Apc5: Anaphase-promot 29.4 1.8E+02 0.0039 24.2 6.1 25 768-792 47-71 (94)
446 PF11838 ERAP1_C: ERAP1-like C 29.1 7E+02 0.015 26.2 15.4 98 709-806 145-246 (324)
447 PF14689 SPOB_a: Sensor_kinase 28.3 1.1E+02 0.0025 23.1 4.2 30 693-722 22-51 (62)
448 COG1747 Uncharacterized N-term 28.2 9.1E+02 0.02 27.3 21.2 159 557-722 65-233 (711)
449 PF15469 Sec5: Exocyst complex 28.2 3.9E+02 0.0083 25.6 9.0 88 699-802 91-179 (182)
450 PF02847 MA3: MA3 domain; Int 28.1 1.4E+02 0.0031 25.7 5.5 64 301-366 6-71 (113)
451 KOG2422 Uncharacterized conser 27.8 5.6E+02 0.012 29.3 10.7 104 704-807 248-388 (665)
452 PHA03100 ankyrin repeat protei 27.6 9.2E+02 0.02 27.2 17.1 147 60-221 39-200 (480)
453 COG3947 Response regulator con 27.6 2.4E+02 0.0051 29.1 7.2 54 665-720 285-339 (361)
454 PF11848 DUF3368: Domain of un 27.3 2E+02 0.0043 20.4 5.0 33 468-500 13-45 (48)
455 PF11848 DUF3368: Domain of un 27.1 2.1E+02 0.0046 20.3 5.2 33 569-601 13-45 (48)
456 PF08424 NRDE-2: NRDE-2, neces 27.1 7.8E+02 0.017 26.1 12.8 113 676-792 48-184 (321)
457 KOG0376 Serine-threonine phosp 26.4 1E+02 0.0022 34.0 4.8 50 770-819 12-61 (476)
458 KOG0292 Vesicle coat complex C 26.3 7.6E+02 0.017 29.9 11.7 130 636-790 651-781 (1202)
459 PF14689 SPOB_a: Sensor_kinase 25.3 1E+02 0.0023 23.3 3.5 25 663-687 27-51 (62)
460 PF08424 NRDE-2: NRDE-2, neces 25.0 8.5E+02 0.018 25.9 13.4 43 762-804 65-107 (321)
461 KOG1308 Hsp70-interacting prot 24.8 27 0.00059 36.4 0.3 92 773-864 125-226 (377)
462 PF04762 IKI3: IKI3 family; I 24.7 7.4E+02 0.016 30.9 12.5 27 696-722 814-842 (928)
463 KOG2659 LisH motif-containing 24.1 3.8E+02 0.0082 26.6 7.8 91 661-755 28-128 (228)
464 KOG1464 COP9 signalosome, subu 24.1 7.7E+02 0.017 25.1 20.1 202 542-744 42-286 (440)
465 COG5431 Uncharacterized metal- 24.1 24 0.00051 29.3 -0.2 12 907-918 46-57 (117)
466 PF11768 DUF3312: Protein of u 23.5 4E+02 0.0088 30.2 8.8 108 531-658 412-524 (545)
467 PF13971 Mei4: Meiosis-specifi 23.1 37 0.00081 36.2 1.0 29 868-896 13-42 (375)
468 COG2178 Predicted RNA-binding 23.0 6.9E+02 0.015 24.2 8.9 106 610-724 20-151 (204)
469 KOG3807 Predicted membrane pro 23.0 9E+02 0.019 25.4 14.5 111 674-798 231-348 (556)
470 COG4890 Predicted outer membra 22.9 41 0.00088 21.5 0.7 10 877-886 11-20 (37)
471 TIGR02710 CRISPR-associated pr 22.0 1.1E+03 0.023 25.9 12.2 52 668-719 139-196 (380)
472 PF08311 Mad3_BUB1_I: Mad3/BUB 21.8 5E+02 0.011 23.1 7.8 42 677-718 81-123 (126)
473 PF07575 Nucleopor_Nup85: Nup8 21.5 8.2E+02 0.018 28.5 11.7 24 459-483 300-323 (566)
474 smart00544 MA3 Domain in DAP-5 21.5 5E+02 0.011 22.2 7.7 22 564-585 8-29 (113)
475 COG4941 Predicted RNA polymera 20.9 1E+03 0.022 25.3 12.0 120 674-798 271-401 (415)
476 PF12069 DUF3549: Protein of u 20.7 1E+03 0.023 25.3 11.5 18 692-709 228-245 (340)
477 KOG2471 TPR repeat-containing 20.4 1.2E+03 0.027 26.1 14.0 102 636-740 248-379 (696)
478 PF11838 ERAP1_C: ERAP1-like C 20.3 1E+03 0.022 25.0 19.1 80 609-688 146-230 (324)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-131 Score=1194.53 Aligned_cols=763 Identities=31% Similarity=0.523 Sum_probs=744.7
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh
Q 002460 116 DRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF 195 (919)
Q Consensus 116 ~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~ 195 (919)
.++..++|.+|.+|++.| .+++|+.+|+.|.+.|+.|+..||..++++|.+.+.+..|.++|..+.+.|..++..
T Consensus 48 ~~~~~~~n~~i~~l~~~g-----~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHG-----QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch
Confidence 567788999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
++|+||++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|.+|+..+.
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred h-hHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHH
Q 002460 276 R-HEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQI 354 (919)
Q Consensus 276 ~-~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 354 (919)
. .+.+++..+.+.+. .+|+.+||++|.+|++.|++++|.++|++|. .||.+||+++|.+|++.|+.++|.++
T Consensus 203 ~~~~~~~~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 203 LARGREVHAHVVRFGF---ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred hhhHHHHHHHHHHcCC---CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 5 78899998888764 4789999999999999999999999999996 58999999999999999999999999
Q ss_pred HHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 355 HGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 355 ~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
+..|.+.|+.||..+|+.+|.++++.| ..+.++++|..+.+.|+.||..+||+||+
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g------------------------~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLG------------------------DERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcC------------------------ChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 999999999999999999999999976 56789999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|+. +++||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCC
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGN 674 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 674 (919)
||+++|.+|++.|.++.+.++|..+.+.|+.++..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELIL 754 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~ 754 (919)
.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+|+|+++||.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999778999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch--
Q 002460 755 SMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-- 832 (919)
Q Consensus 755 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-- 832 (919)
+|+.+||..+|++|+++|+.||+.+.|+.+++++++++|++++.|++|+|+|+..|+|++|.++++.|+++|++|+||
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------HHHHHHHHHHHHHHHhCCcccCCCcccccCCHHHHHHhHhhhhHHHHHHHhhccCCCCC
Q 002460 833 ---------------------DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSS 891 (919)
Q Consensus 833 ---------------------~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~ 891 (919)
++||.+|+++..+|++.||+||+..++ +++||+||..|++||||||+|||||+||||+
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~ 808 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGM 808 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCC
Confidence 889999999999999999999999988 5588999999999999999999999999999
Q ss_pred cEEEEcC---------------------C--ccCCccccccCCccCCCC
Q 002460 892 VILSNKE---------------------P--LYANRFHHLRDGMCPCAD 917 (919)
Q Consensus 892 ~~~~~kn---------------------i--rd~~r~h~f~~g~csc~d 917 (919)
||||+|| | ||++|||||+||+|||||
T Consensus 809 ~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 809 PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999 4 999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-107 Score=963.75 Aligned_cols=566 Identities=34% Similarity=0.568 Sum_probs=549.5
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc-CCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHH
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN-VQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSL 373 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 373 (919)
++..+|+++|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466789999999999999999999999999765 7899999999999999999999999999999888877776666666
Q ss_pred HHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 002460 374 INMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKD 453 (919)
Q Consensus 374 i~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~ 453 (919)
+++|+++ |++++|.++|++|+
T Consensus 165 i~~y~k~-----------------------------------------------------------g~~~~A~~lf~~m~ 185 (697)
T PLN03081 165 LLMHVKC-----------------------------------------------------------GMLIDARRLFDEMP 185 (697)
T ss_pred HHHHhcC-----------------------------------------------------------CCHHHHHHHHhcCC
Confidence 6665555 57899999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHH
Q 002460 454 GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGI 533 (919)
Q Consensus 454 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 533 (919)
++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++++|..+.+.|+.+|..++|+|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
++|..+.+.|+.||..++++||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002460 694 SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACR 773 (919)
Q Consensus 694 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 773 (919)
.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+++|++++|.+++++|+.+|+..+|++|+.+|+
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch---------------------
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA--------------------- 832 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------- 832 (919)
.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHHHHhCCcccCCCcccccCCHHHHHHhHhhhhHHHHHHHhhccCCCCCcEEEEcC------------
Q 002460 833 --DLIFAKVEGLIKRIKEGGYVPDTDFVLLDVEEEEKERALYYHSEKLARAYGLISTPPSSVILSNKE------------ 898 (919)
Q Consensus 833 --~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~k~~~~~~hse~la~~~~~~~~~~~~~~~~~kn------------ 898 (919)
++||++|+++..+|++.||+||+.+++||+++++|+..+++||||||+|||||+||||+||||+||
T Consensus 586 ~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k 665 (697)
T PLN03081 586 QSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIK 665 (697)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------C--ccCCccccccCCccCCCCCC
Q 002460 899 ---------P--LYANRFHHLRDGMCPCADNC 919 (919)
Q Consensus 899 ---------i--rd~~r~h~f~~g~csc~d~~ 919 (919)
| ||++|||||+||+|||||||
T Consensus 666 ~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 666 FIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 3 99999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-90 Score=838.69 Aligned_cols=645 Identities=25% Similarity=0.402 Sum_probs=620.9
Q ss_pred CCCCCChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHH
Q 002460 47 FSSSSSSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSIL 126 (919)
Q Consensus 47 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li 126 (919)
.+.+|+..+|..++++|.+.+.+..|.++|+.+++.|..++..++|+||++|+++|+++.|+++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 002460 127 AAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSK 206 (919)
Q Consensus 127 ~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 206 (919)
.+|++.| ++++|+++|++|...|+.||.+||+++|++|++.+++..+.++|..+.+.|+.||+.++|+||++|++
T Consensus 160 ~~~~~~g-----~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 160 GGYAKAG-----YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHhCC-----CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcch-hHHHHHHHH
Q 002460 207 FGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKR-HEEQVQAYA 285 (919)
Q Consensus 207 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~~~~~~ 285 (919)
+|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.+.. .+.+++..+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975 788999988
Q ss_pred HHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCc
Q 002460 286 IKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYS 365 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 365 (919)
.+.+. .||+.+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++++.|.+.|+.|
T Consensus 315 ~~~g~---~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 315 VKTGF---AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHhCC---ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 88764 4889999999999999999999999999996 5899999999999999999999999999999999999
Q ss_pred cchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 002460 366 AVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEA 445 (919)
Q Consensus 366 ~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A 445 (919)
|..++++++.+|++.| .++.+.++|+.+.+.|+.|+..++|+||++|+++|++++|
T Consensus 388 d~~t~~~ll~a~~~~g------------------------~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 388 DEITIASVLSACACLG------------------------DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred CceeHHHHHHHHhccc------------------------hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999977 6789999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 002460 446 EYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFEL 525 (919)
Q Consensus 446 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 525 (919)
.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|.++.++++|..+.+.|+.+
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999986 699999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC 605 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 605 (919)
|..++|+|+++|+++|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHH-HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeehHHHHHHHhcCCHHHHHHHHH
Q 002460 606 LTALEQGRQIHANLI-KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD-MRNTVLWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 606 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999998 78999999999999999999999999999999996 7999999999999999999999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002460 684 DMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH 732 (919)
Q Consensus 684 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 732 (919)
++.+ +.|+.. .|..+.+.|+..|++++|.++.+.|.++ |+++++..
T Consensus 682 ~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 682 HIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCCc
Confidence 9988 578654 6777788999999999999999999997 99887643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-69 Score=641.06 Aligned_cols=474 Identities=25% Similarity=0.436 Sum_probs=444.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcH
Q 002460 116 DRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESI-TFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDE 194 (919)
Q Consensus 116 ~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~ 194 (919)
.++.++||++|.+|++.| ++++|+++|+.|...+ ..||..||+.++++|++.++++.+.++|..|.+.|+.||+
T Consensus 84 ~~~~~~~~~~i~~l~~~g-----~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-----RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CCCceeHHHHHHHHHcCC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 467889999999999999 9999999999999865 8899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhc
Q 002460 195 FVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLG 274 (919)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 274 (919)
.+||+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l-------- 230 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM-------- 230 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999988887776666666
Q ss_pred chhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHH
Q 002460 275 KRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQI 354 (919)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~ 354 (919)
+.+|++.|+.+.|+++
T Consensus 231 ----------------------------------------------------------------l~a~~~~~~~~~~~~l 246 (697)
T PLN03081 231 ----------------------------------------------------------------LRASAGLGSARAGQQL 246 (697)
T ss_pred ----------------------------------------------------------------HHHHhcCCcHHHHHHH
Confidence 8888888888888888
Q ss_pred HHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 355 HGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 355 ~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
|..+.+.|+.+|..++|+||++|+++|
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g----------------------------------------------------- 273 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCG----------------------------------------------------- 273 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCC-----------------------------------------------------
Confidence 888888887777666666666665554
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|+++
T Consensus 274 ------~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 ------DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred ------CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHH-cCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeehHHHHHHHhc
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIK-LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD-MRNTVLWNAMLVGLAQH 672 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~ 672 (919)
||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++|++|+ .|+..+|++|+.+|..+
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999975 6999999999999999999999999999999997 68899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 002460 673 GNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP 728 (919)
Q Consensus 673 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 728 (919)
|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.++ |+..
T Consensus 508 g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 508 KNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999875 5675 568999999999999999999999999886 7754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-69 Score=637.95 Aligned_cols=529 Identities=17% Similarity=0.208 Sum_probs=464.3
Q ss_pred CCCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchH-----HHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCC
Q 002460 84 QIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISW-----NSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTS 158 (919)
Q Consensus 84 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~-----n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~ 158 (919)
..++...|..+++.|+++|++++|+++|++|++++++.| +.++.+|++.| ..++|+.+|+.|.. ||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-----~~~eAl~lf~~M~~----pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-----AVKEAFRFAKLIRN----PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-----CHHHHHHHHHHcCC----CC
Confidence 346677889999999999999999999999998776655 45667799999 89999999999974 99
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCC----CCCceeHHHHHHH
Q 002460 159 RLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQ----ERDVVLWKVMLRA 234 (919)
Q Consensus 159 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~ 234 (919)
..||+.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4899999999999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChh
Q 002460 235 YAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNH 314 (919)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~ 314 (919)
|++.|++++|+++|++|.+.|+.||.+||+.+ |.+|++.|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL-------------------------------------I~a~~k~G~~d 559 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-------------------------------------ISACGQSGAVD 559 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------------------HHHHHHCCCHH
Confidence 99999999999999999999999875555554 88889999999
Q ss_pred hHHHHHHHHHh--hcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhh
Q 002460 315 GAIECFVNMIR--SNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFT 392 (919)
Q Consensus 315 ~A~~l~~~m~~--~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~ 392 (919)
+|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.|+
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-------------------------- 613 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-------------------------- 613 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--------------------------
Confidence 99999999976 67889999999999999998888888888888877766554
Q ss_pred HHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 002460 393 LASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNN 472 (919)
Q Consensus 393 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 472 (919)
..+||++|.+|++.|+
T Consensus 614 ----------------------------------------------------------------~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 614 ----------------------------------------------------------------PEVYTIAVNSCSQKGD 629 (1060)
T ss_pred ----------------------------------------------------------------hHHHHHHHHHHHhcCC
Confidence 4456666666677778
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc
Q 002460 473 SHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND 552 (919)
Q Consensus 473 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 552 (919)
+++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|++||.+|+++|++++|.++|++
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCc
Q 002460 553 IP----APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDP 628 (919)
Q Consensus 553 m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 628 (919)
|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.||.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 95 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHH----HHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 002460 629 FVGISLVDMY----AKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSAC 704 (919)
Q Consensus 629 ~~~~~li~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 704 (919)
.+|++|+.++ .++++..++...|+.+...+...|+ ++|+.+|++|++.|+.||..||+.++.++
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 9999999774 3444444444444443333444444 56999999999999999999999999888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM---PFEASAS 763 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m---~~~p~~~ 763 (919)
+..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++++| ++.|+..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888888888888887664 7777889999999998543 47899999998 5666543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.8e-68 Score=626.42 Aligned_cols=534 Identities=17% Similarity=0.205 Sum_probs=475.5
Q ss_pred CChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCC-CCCcchhhHHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHH
Q 002460 51 SSSSQWFSILRHAISTSDLLLGKSTHARILNSSQ-IPDRFLTNNLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAY 129 (919)
Q Consensus 51 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~ 129 (919)
++...|..++..|.+.|++..|.+++..|.+.|+ .++...++.++..|++.|.+++|..+|+.|+.||..+||.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4556788899999999999999999999999995 567788899999999999999999999999999999999999999
Q ss_pred HhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 002460 130 AHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGK 209 (919)
Q Consensus 130 ~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 209 (919)
++.| ++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+||+||.+|++.|+
T Consensus 448 ~k~g-----~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 448 ASSQ-----DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HhCc-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCC----CCceeHHHHHHHHHHcCCchHHHHHHHHHHH--CCCCCChhhHHHHHHHhhhhcchhHHHHHH
Q 002460 210 IREAKFLFDGMQE----RDVVLWKVMLRAYAENGFGEEVFHLFVDLHR--SGLCPDDESVQCVLGVISDLGKRHEEQVQA 283 (919)
Q Consensus 210 ~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 283 (919)
+++|.++|++|.+ ||.++||+||.+|++.|++++|.++|++|.. .|+.||.+|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT--------------------- 581 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT--------------------- 581 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH---------------------
Confidence 9999999999964 8999999999999999999999999999986 577887555
Q ss_pred HHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCC
Q 002460 284 YAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGF 363 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 363 (919)
||+||.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++++.|.+.|+
T Consensus 582 ----------------ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 582 ----------------VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred ----------------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 5555999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 002460 364 YSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMA 443 (919)
Q Consensus 364 ~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 443 (919)
.||..+|++||++|++.| .++.+.+++..|.+.|+.||..+|++||.+|+++|+++
T Consensus 646 ~PD~~TynsLI~a~~k~G------------------------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAG------------------------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred CCCHHHHHHHHHHHHhCC------------------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999977 57889999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 444 EAEYLFENKD----GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 444 ~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
+|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|.+|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999984 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCChhHHHHHHHHHH----HcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH
Q 002460 520 KSGFELDLCVSSGILDMYV----KCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFT 595 (919)
Q Consensus 520 ~~g~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 595 (919)
+.|+.||..+|++|+.++. +++...++...|+.+...+...|+ ++|+.+|++|++.|+.||..|
T Consensus 782 k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999999998743 344444444444443333444443 569999999999999999999
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCH
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNG 675 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 675 (919)
|+.+|.+++..+..+.+..+++.+...+..|+..+|++| |.++.+. .
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L-------------------------------i~g~~~~--~ 896 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL-------------------------------VDGFGEY--D 896 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH-------------------------------HHhhccC--h
Confidence 999886666666666665555555555555555555544 4444221 3
Q ss_pred HHHHHHHHHHHHcCCCCChh
Q 002460 676 EETLKLFEDMKAHGVEPDSV 695 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~~ 695 (919)
++|..+|++|.+.|+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 67999999999999999865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-35 Score=369.59 Aligned_cols=754 Identities=12% Similarity=0.029 Sum_probs=551.7
Q ss_pred ChhhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC----CCcchHHHHHH
Q 002460 52 SSSQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD----RDLISWNSILA 127 (919)
Q Consensus 52 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~n~li~ 127 (919)
+...+..+...+...|+++.|...+..+.+.++. +......+...|.+.|++++|..+|..... .....+..+..
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 133 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL 133 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHH
Confidence 4455666777888899999999999999887754 344556677788888999999888877652 23345666677
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 002460 128 AYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKF 207 (919)
Q Consensus 128 ~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 207 (919)
.|...| ++++|...|+++.+... .+...+..+...+...|+++.|..+++.+++.. +.+...+..+...+...
T Consensus 134 ~~~~~~-----~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 134 AYLGLG-----QLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSL 206 (899)
T ss_pred HHHHcC-----CHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhc
Confidence 778888 88888888888876432 234466667777788888888888888887764 45666777778888888
Q ss_pred CChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHH-Hhhhhcch-hHHHHH
Q 002460 208 GKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLG-VISDLGKR-HEEQVQ 282 (919)
Q Consensus 208 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~-~~~~~~ 282 (919)
|+.++|...|++..+ .+...|..++..+.+.|++++|...++++.+.. |+......... .....++. .+...+
T Consensus 207 g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 207 GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888888887654 355667778888888888888888888877643 22211111100 00111111 111111
Q ss_pred HHHHH------------------------------HhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCc
Q 002460 283 AYAIK------------------------------LLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDS 332 (919)
Q Consensus 283 ~~~~~------------------------------~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 332 (919)
...++ ......+.+...+..+...+.+.|++++|...++++.+.. ..+.
T Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 363 (899)
T TIGR02917 285 QDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDP 363 (899)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 11111 1111223445566777777778888888888887776543 2345
Q ss_pred hhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccC----------CCCCchhhHHHHHHhhcC
Q 002460 333 VTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVC----------GLRTDQFTLASVLRASSS 402 (919)
Q Consensus 333 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~----------~~~p~~~~~~~~l~~~~~ 402 (919)
..+..+...+.+.|+.++|.+.+..+.+... .+...+..+...+...|+.. ...|+.......+.....
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHH
Confidence 5666777777788888888888887766532 23445556666666666542 111221111111111111
Q ss_pred CccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 002460 403 LPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALEL 479 (919)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 479 (919)
..+..+.+..++..+... .+.++.++..+...|.+.|++++|...|+++.. .+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 245566677777666553 345677888888888899999999988887543 3556677788888888999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---C
Q 002460 480 FSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---P 556 (919)
Q Consensus 480 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~ 556 (919)
|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 98887754 3456677778888888889999998888887765 45566777888889999999999999888763 4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHH
Q 002460 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVD 636 (919)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 636 (919)
+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 66788889999999999999999999988753 3355667788888888999999999998887754 345677788889
Q ss_pred HHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
.+.+.|++++|..+++.+.. .+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 99999999999999988863 35667888888899999999999999999884 56667778888889999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ . .++++.++..+...+...|+ ++|...+++++++
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999988873 4456888888999999999999999999887 2 33467788899999999999 8899999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 792 EPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999998887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-35 Score=364.62 Aligned_cols=745 Identities=11% Similarity=-0.001 Sum_probs=566.8
Q ss_pred hhHHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC---CCcchHHHHHHHHH
Q 002460 54 SQWFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD---RDLISWNSILAAYA 130 (919)
Q Consensus 54 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~ 130 (919)
..+..+...+...|++..|...+.++++... .+...+..+...+...|++++|..+++++.+ ++...|..+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455555666778889999999988887653 3445677788888889999999999887642 35567777778888
Q ss_pred hcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCh
Q 002460 131 HSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKI 210 (919)
Q Consensus 131 ~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 210 (919)
..| ++++|...|++..... +.+..++..+...+...|+++.|...++.+.+.... +..........+...|++
T Consensus 205 ~~g-----~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 205 SLG-----NIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred hcC-----CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCH
Confidence 888 8999999998887643 234556667777788888888888888888876532 333333344455667888
Q ss_pred hHHHHHHhcCCCCC---ceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhhhcch-hHHHHHHHH
Q 002460 211 REAKFLFDGMQERD---VVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDD-ESVQCVLGVISDLGKR-HEEQVQAYA 285 (919)
Q Consensus 211 ~~A~~~f~~m~~~~---~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~-~~~~~~~~~ 285 (919)
++|...|+++.+.+ ...+..+...+.+.|++++|...|++..+. .|+. ..+..+...+...++. .........
T Consensus 278 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887765422 223444555677778888888888877663 2333 3333333444444543 233333322
Q ss_pred HHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCc
Q 002460 286 IKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYS 365 (919)
Q Consensus 286 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 365 (919)
. ..++.+...|+.+...+.+.|++++|.++|+++.+... .+...+..+...+...|+.+.|.+.+..+.+.....
T Consensus 356 ~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 356 L----GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred H----hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence 2 23345566777777778888888888888877765421 133445555566667777777777777776654222
Q ss_pred cchHHhHHHHHhHhcCccC----------CCCCch-hhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHH
Q 002460 366 AVIVGNSLINMYSKMGCVC----------GLRTDQ-FTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALID 434 (919)
Q Consensus 366 ~~~~~~~li~~~~k~g~~~----------~~~p~~-~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~ 434 (919)
......++..|.+.|+.+ ...|+. ..+..+...+. ..+..+.+...+..+++.. +.+...+..+..
T Consensus 431 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 431 -GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 233445556666665541 111222 22222222222 2567788888988887754 335667788999
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQG 511 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 511 (919)
.+.+.|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...+...|++++|
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998654 366789999999999999999999999998764 34566777888999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 002460 512 KQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSG 588 (919)
Q Consensus 512 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 588 (919)
..++..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+..
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999988754 56778899999999999999999999998753 466789999999999999999999999998753
Q ss_pred CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeehHHH
Q 002460 589 VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNTVLWNAML 666 (919)
Q Consensus 589 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li 666 (919)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 743 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH 743 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHH
Confidence 3457788899999999999999999999998876 4566778889999999999999999999986 45567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCH
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRT 746 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~ 746 (919)
.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+. .+++...+..+..++...|+
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-
Confidence 99999999999999999999852 335668888899999999999999999999874 34568899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 747 KEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 747 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
++|++.++++ ...| ++.+|..+..++...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8899999986 4444 5677888999999999999999999999999999999999999999999999999999998863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.1e-22 Score=253.55 Aligned_cols=641 Identities=12% Similarity=0.033 Sum_probs=411.2
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC--CCcc-hH----------
Q 002460 56 WFSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD--RDLI-SW---------- 122 (919)
Q Consensus 56 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~---------- 122 (919)
+....+.+...++.+.+.+.+.++..... .|..+...+...+.+.|+.++|.+.+++..+ |+.. .+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 55556777788899999999998876542 2456677788888999999999999998753 3322 11
Q ss_pred ------HHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh
Q 002460 123 ------NSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRL-TLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF 195 (919)
Q Consensus 123 ------n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~ 195 (919)
-.+...+.+.| ++++|+..|+++.... +|+.. ............|+.++|...++.+++.. +.+..
T Consensus 110 ~~~~~~l~~A~ll~~~g-----~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~ 182 (1157)
T PRK11447 110 PEGRQALQQARLLATTG-----RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTG 182 (1157)
T ss_pred CchhhHHHHHHHHHhCC-----CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHH
Confidence 12223466677 7888888877776432 22211 11111111223466666666666666653 33444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
....|...+...|+.++|...|+++.+.... +...+...+..+...+..|+
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~---------------- 233 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDA---------------- 233 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChh----------------
Confidence 5556666666666666666666655332110 00111111111111111111
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHH
Q 002460 276 RHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIH 355 (919)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~ 355 (919)
.+..+...+..+-.....+.|...+.++......|+.... ..-.++...|++++|...+
T Consensus 234 --------------------~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~-~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 234 --------------------SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR-AQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred --------------------hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH-HHHHHHHHCCCHHHHHHHH
Confidence 1111222222222222334444444444333222322111 1122233445555555555
Q ss_pred HHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 002460 356 GTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDV 435 (919)
Q Consensus 356 ~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~ 435 (919)
+..++.. +.+...+..|...
T Consensus 293 ~~aL~~~------------------------------------------------------------P~~~~a~~~Lg~~ 312 (1157)
T PRK11447 293 QQAVRAN------------------------------------------------------------PKDSEALGALGQA 312 (1157)
T ss_pred HHHHHhC------------------------------------------------------------CCCHHHHHHHHHH
Confidence 4444321 1134445556666
Q ss_pred HHhcCCHHHHHHHHhcCCCC--Cc---chHHH------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 002460 436 YCRNGSMAEAEYLFENKDGF--DL---ATWNA------------MIFGYILSNNSHKALELFSHMHTSGERLDEITIATA 498 (919)
Q Consensus 436 ~~~~g~~~~A~~~f~~~~~~--~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 498 (919)
|.+.|++++|...|++..+. +. ..|.. ....+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~L 391 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGL 391 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 66666777777766654321 11 11222 2345667888888888888887753 2334455666
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCC------------hhhHHHHHH
Q 002460 499 VKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPD------------DVAWTTMIS 566 (919)
Q Consensus 499 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------------~~~~~~li~ 566 (919)
-..+...|++++|.+.+..+++.. +.+...+..+...|. .++.++|...++.+.... ...+..+..
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777788888888888888888764 334556666777774 457888888888765321 123455677
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHH
Q 002460 567 GCVDNGEEDLALSIYHQMRLSGVVP-DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIE 645 (919)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 645 (919)
.+...|++++|++.|++.++. .| +...+..+...+.+.|++++|...++.+++... .+...+..+...+.+.|+.+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHH
Confidence 788999999999999999875 34 345566788889999999999999999887543 33444445666678899999
Q ss_pred HHHHHHHhCCCCC----e---------eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 002460 646 DAYILFKQMDMRN----T---------VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE 712 (919)
Q Consensus 646 ~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 712 (919)
+|...++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+...|+.++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999999886321 1 1123456678899999999999872 23355577788889999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 713 AYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 713 a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
|.+.|+...+. .| +...+..++.+|...|++++|++.++.. ...| +..++..+..++...|++++|...+++++
T Consensus 622 A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99999999863 45 4788999999999999999999999987 3445 45677778888889999999999999999
Q ss_pred hhCCCCCc------hHHHHHHHHhhcCCcchHHHHHHHHH-hCCCC
Q 002460 790 ALEPFDSS------AYVLLSNIFAAANQWDDVTSARGEMK-RKNVK 828 (919)
Q Consensus 790 ~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~~~~ 828 (919)
+..|+++. .+..++.++...|++++|...++... ..|+.
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 98876654 56678999999999999999887764 34554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.3e-22 Score=246.64 Aligned_cols=620 Identities=12% Similarity=0.036 Sum_probs=425.4
Q ss_pred HHHHHhCCChhHHHHHhccCC--CC-CcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhc
Q 002460 95 MTMYSRCGSLVYARRLFDKMP--DR-DLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLS 171 (919)
Q Consensus 95 i~~y~~~g~~~~A~~~f~~m~--~~-~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 171 (919)
++.+-..++.+.|++.++++. .| |...+..++..+.+.| +.++|...+++..+. .|+...+..+..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-----~~~~A~~~l~~l~~~--~P~~~~~~~~~~---- 103 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-----DSDGAQKLLDRLSQL--APDSNAYRSSRT---- 103 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhh--CCCChHHHHHHH----
Confidence 445667889999999998864 33 5667788888889999 999999999998874 355443322111
Q ss_pred CCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHH--H--HHHHHHHcCCchHHHHH
Q 002460 172 SGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWK--V--MLRAYAENGFGEEVFHL 247 (919)
Q Consensus 172 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n--~--li~~~~~~g~~~~A~~l 247 (919)
.+... .|+......+...+.+.|+.++|.+.|+...+.+..... . ........|+.++|++.
T Consensus 104 -------------~~~~~-~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~ 169 (1157)
T PRK11447 104 -------------TMLLS-TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQ 169 (1157)
T ss_pred -------------HHHhc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHH
Confidence 11111 233334455666778888888888888887653221111 1 11111235888889999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc
Q 002460 248 FVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN 327 (919)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 327 (919)
|+++.+. .|+ +...+..+...+...|++++|++.|+++.+..
T Consensus 170 L~~ll~~--~P~------------------------------------~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~ 211 (1157)
T PRK11447 170 LQRLNAD--YPG------------------------------------NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP 211 (1157)
T ss_pred HHHHHHh--CCC------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Confidence 9888773 354 23344556777788888888988888886532
Q ss_pred CCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccch
Q 002460 328 VQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGL 407 (919)
Q Consensus 328 ~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~ 407 (919)
.. +...-..........+....+...+... +..+-. ....
T Consensus 212 ~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~---------------l~~~p~------------------------~~~~ 251 (1157)
T PRK11447 212 AG-RDAAAQLWYGQIKDMPVSDASVAALQKY---------------LQVFSD------------------------GDSV 251 (1157)
T ss_pred Cc-hHHHHHHHHHHHhccCCChhhHHHHHHH---------------HHHCCC------------------------chHH
Confidence 10 0000000111111111111111111111 111100 1112
Q ss_pred hhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 002460 408 HLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMH 484 (919)
Q Consensus 408 ~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 484 (919)
..+...+.........|+.. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22333333332222223221 22345667789999999999987544 366789999999999999999999999998
Q ss_pred HCCCCC-CHhHHH------------HHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhc
Q 002460 485 TSGERL-DEITIA------------TAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551 (919)
Q Consensus 485 ~~g~~p-~~~t~~------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 551 (919)
+..... +...+. ..-..+...|++++|...+..+++.. +.+...+..|...|...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 754221 111111 12335668899999999999999875 4556778889999999999999999999
Q ss_pred cCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--------CCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 552 DIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV--------PDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 552 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+..+ .+...+..+...|. .++.++|+..++++...... .....+..+...+...|++++|.+.++.++
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al 488 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL 488 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8764 34556777777774 46789999988775432110 011234455667788999999999999998
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-- 695 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 695 (919)
+... .+..++..+...|.+.|++++|...|+++.. | +...+..+...+...|+.++|+..++++......++..
T Consensus 489 ~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 489 ALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 8653 3456677799999999999999999998753 3 45556666666778999999999998865432222221
Q ss_pred -------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 002460 696 -------TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHR 766 (919)
Q Consensus 696 -------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 766 (919)
.+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++. ...| +...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 233456678899999999998772 2345667788999999999999999999987 4455 567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.+...+...|+.++|+..++++.+..|+++..+..++.++...|++++|.++++.+....-
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999999999999999999999999999999999999999999999998876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=8.8e-20 Score=216.41 Aligned_cols=255 Identities=13% Similarity=0.066 Sum_probs=153.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHH
Q 002460 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVD 636 (919)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 636 (919)
+...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44556666655555 6666677766665543 345444333344445667777777766665443 223333444556
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeehHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDMRNTVLWNAMLV---GLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
.+.+.|++++|...|++....++..++.... .....|++++|+..|++.++ +.|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6666777777777776665433333332222 22233777777777777766 356655666666667777777777
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 714 YENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
...|+.... +.|+ ...+..+...+...|++++|++.+++. ...| ++..+..+..++...|++++|+..++++++
T Consensus 629 ~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777766654 3443 556666666666777777777766664 3344 445666666667777777777777777777
Q ss_pred hCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 791 LEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 791 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
++|+++.+....+++.....+++.|.+-+++
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7777666666677777766666666665543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=9e-19 Score=207.88 Aligned_cols=574 Identities=9% Similarity=-0.004 Sum_probs=376.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCC--ceeHHHHHHHHHHcCCchHHHHHH
Q 002460 171 SSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERD--VVLWKVMLRAYAENGFGEEVFHLF 248 (919)
Q Consensus 171 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~n~li~~~~~~g~~~~A~~l~ 248 (919)
..|++++|...++.+++.... +..++..|...|.+.|+.++|+..+++..+.| -..|..++..+ +++++|.+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 448888888888888887643 37888999999999999999999999887633 23333333333 9999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHh-hhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhc
Q 002460 249 VDLHRSGLCPDDESVQCVLGVI-SDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSN 327 (919)
Q Consensus 249 ~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 327 (919)
+++.+. .|+..-...++... .... .-.|.+. ++|.+.++ .....
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~-----------------------------~l~y~q~---eqAl~AL~-lr~~~ 176 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQN-----------------------------ALRLAQL---PVARAQLN-DATFA 176 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccc-----------------------------hhhhhhH---HHHHHHHH-HhhhC
Confidence 999883 45433222221110 0000 0113333 44444444 33333
Q ss_pred CCCCchhHHHH-hhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhc-CccCCCCCchhhHHHHHHhhcCCcc
Q 002460 328 VQYDSVTFLVA-LAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKM-GCVCGLRTDQFTLASVLRASSSLPE 405 (919)
Q Consensus 328 ~~pd~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~-g~~~~~~p~~~~~~~~l~~~~~~~~ 405 (919)
..|+..+.... ...+.+.++++.+..++..+.+.+... ..-...|-..|... +
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~------------------------ 231 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQL------------------------ 231 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhC------------------------
Confidence 44445444444 667777777777777777777765433 22233333344431 2
Q ss_pred chhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhCCChh------
Q 002460 406 GLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF-----DLATWNAMIFGYILSNNSH------ 474 (919)
Q Consensus 406 ~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~------ 474 (919)
. +.+..++. .....|+.++..+.+.|.+.|+.++|.+++++++.- +..+|--++ .+.+...
T Consensus 232 ~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~ 303 (987)
T PRK09782 232 D-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALAN 303 (987)
T ss_pred H-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccc
Confidence 1 23333322 233467888999999999999999999999987653 334444443 3333220
Q ss_pred -----------HHHHHHHHHHHC----------CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHH
Q 002460 475 -----------KALELFSHMHTS----------GERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGI 533 (919)
Q Consensus 475 -----------~A~~~~~~m~~~----------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 533 (919)
-.+++.+..... ...|.......-..+....+...++.+.+..+.+.. +-+....--+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~ 382 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQL 382 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 011111111111 123333321111111122345555666666655542 2344444445
Q ss_pred HHHHHHcCCHHHHHHHhccCCC--C----ChhhHHHHHHHHHHcCC---hhHHHHH------------HH----------
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPA--P----DDVAWTTMISGCVDNGE---EDLALSI------------YH---------- 582 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~------------~~---------- 582 (919)
.-...+.|+.++|..+|+..-. + +...-+-++..|.+++. ..+++.+ ..
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 5556788999999999987654 2 23344567788877766 4444333 11
Q ss_pred HHHh-cCCCC---CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--
Q 002460 583 QMRL-SGVVP---DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-- 656 (919)
Q Consensus 583 ~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 656 (919)
.... .+..| +...+..+..++.. +..++|...+....... |+......+...+...|++++|...|+++..
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1111 11223 34455555555554 78888999777776654 4444433455556789999999999998763
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF 735 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 735 (919)
++...+..+..++.+.|+.++|...|++.++. .|+.. .+..+...+...|++++|...+++..+ +.|+...|..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~ 614 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVA 614 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHH
Confidence 44556777888899999999999999999985 45543 344444555677999999999999875 4678889999
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 002460 736 LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
+..++.+.|+.++|+..+++. ...| +...+..+..++...|+.++|+..++++++++|+++.++..++.+|...|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999987 5566 45677788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 002460 814 DVTSARGEMKRK 825 (919)
Q Consensus 814 ~a~~~~~~m~~~ 825 (919)
+|...+++..+.
T Consensus 695 eA~~~l~~Al~l 706 (987)
T PRK09782 695 ATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHhc
Confidence 999999877643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-18 Score=181.88 Aligned_cols=379 Identities=14% Similarity=0.090 Sum_probs=290.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH-
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK- 500 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 500 (919)
-..+|..+.+.+-..|++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.+...+-+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 3567888889999999999999999876553 567899999999999999999999988876 4576655444333
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChhHH
Q 002460 501 ACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPD---DVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 577 (919)
.....|.+.+|...+..+++.. +--..+|+.|...+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 2234678888888888777654 2235567888888888888888888888876533 33677778888888888888
Q ss_pred HHHHHHHHhcCCCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC
Q 002460 578 LSIYHQMRLSGVVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM 656 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 656 (919)
+..|.+.... .|+ .+.+..+...|-..|.++.|...+++.++... .-...|+.|..++-..|++.+|...+.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 8888877653 454 34566666667778888888888888777542 2345777788888888888888888887762
Q ss_pred --C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hh
Q 002460 657 --R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VE 731 (919)
Q Consensus 657 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 731 (919)
| -..+.+.|...|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|+..+++.. .+.|+ ..
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 2 355777888888888888888888888877 677644 67888888888888888888888775 57787 67
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 809 (919)
.|+.+...|-..|+.++|.+.+.+. .+.|.. ..++.|...++..|++.+|+..++.+++++|+.|.+|-.|+....--
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8888888888888888888888776 566643 46777888888888888888888888888888888888888777777
Q ss_pred CCcch
Q 002460 810 NQWDD 814 (919)
Q Consensus 810 g~~~~ 814 (919)
.+|.+
T Consensus 504 cdw~D 508 (966)
T KOG4626|consen 504 CDWTD 508 (966)
T ss_pred hcccc
Confidence 77766
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=7.3e-19 Score=183.61 Aligned_cols=379 Identities=13% Similarity=0.109 Sum_probs=312.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchH
Q 002460 434 DVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCLLMLK 509 (919)
Q Consensus 434 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 509 (919)
..+.+..+++....--..... .-..+|..+...+-..|+.++|+.+++.|.+. +|+ ...|..+-.++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCc
Confidence 445555555554332222111 13457899999999999999999999999984 554 457888888999999999
Q ss_pred HHHHHHHHHHHhCCCCCh-hHHHHHHHHHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 510 QGKQMHAYAMKSGFELDL-CVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 510 ~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
.|.+.+...++.. |+. .+.+.+.......|++++|...+.+..+ | =.+.|+.|...+-.+|+..+|++.|++..
T Consensus 168 ~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 168 LAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred ccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999999988764 443 3445566677778999999988876553 4 35689999999999999999999999988
Q ss_pred hcCCCCCH-hHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--CC-eee
Q 002460 586 LSGVVPDE-FTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--RN-TVL 661 (919)
Q Consensus 586 ~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~ 661 (919)
+ +.|+- ..|..+-..+...+.++.|...+.++..... ....++..|.-.|-..|.+|-|+..+++... |+ ..+
T Consensus 246 k--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 246 K--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred c--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 7 45543 4677788888888888888888877766542 2344555688889999999999999999874 33 669
Q ss_pred ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 002460 662 WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDA 739 (919)
Q Consensus 662 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 739 (919)
||.|..++-..|++.+|...|.+.+. +.|+.. ..+.|..++...|.+++|..+|....+ +.|. ....+.|...
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASI 397 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHH
Confidence 99999999999999999999999998 678765 788999999999999999999998864 5676 7788999999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHH
Q 002460 740 LGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTS 817 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 817 (919)
|-.+|++++|+..+++. .++|+. ..++.+...+...|+++.|...+.+++.++|.-+.++..|+.+|-.+|+..+|+.
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 99999999999999986 788875 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 002460 818 ARGEMKR 824 (919)
Q Consensus 818 ~~~~m~~ 824 (919)
-++....
T Consensus 478 sY~~aLk 484 (966)
T KOG4626|consen 478 SYRTALK 484 (966)
T ss_pred HHHHHHc
Confidence 8876543
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=4.2e-18 Score=189.42 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=206.3
Q ss_pred HHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHcccccH
Q 002460 536 MYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD---EFTFAILVKASSCLTAL 609 (919)
Q Consensus 536 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 609 (919)
.+...|++++|...|+++.+ | +..+|..+...|...|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556666666666666653 2 334566666666677777777777776665432221 13455556666666777
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCe--------eeehHHHHHHHhcCCHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNT--------VLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~ 681 (919)
++|..++..+.+.. +.+...++.++.+|.+.|++++|.+.++.+...+. ..|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777776666542 23455666777777777777777777777653211 1345567777888999999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 002460 682 FEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGRTKEAGELILSM-P 757 (919)
Q Consensus 682 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~~~eA~~~~~~m-~ 757 (919)
|+++.+. .|+ ...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998874 454 446777778888999999999999988763 343 466788889999999999999999887 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhh---cCCcchHHHHHHHHHhCCCCCCch
Q 002460 758 FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA---ANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 758 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
..|+...+..+...+...|++++|..+++++++..|+++. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5677767778888899999999999999999999997664 4444444432 568999999999999988888885
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.2e-16 Score=185.10 Aligned_cols=389 Identities=12% Similarity=0.019 Sum_probs=270.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcc
Q 002460 429 STALIDVYCRNGSMAEAEYLFENKD--GFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCL 505 (919)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 505 (919)
+......|.+.|++++|...|++.. .|+...|..+..+|.+.|++++|++.+++..+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3445566777777777777777633 245566777777777777777777777777664 333 34566666677777
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-----------------------------C
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-----------------------------P 556 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----------------------------~ 556 (919)
|++++|...+..+...+-..+.... .++.-+.+......+...++.-+. .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 7777776665544333211111111 111111111111122222211110 0
Q ss_pred Ch---hhHHHHHHH---HHHcCChhHHHHHHHHHHhcC-CCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCc
Q 002460 557 DD---VAWTTMISG---CVDNGEEDLALSIYHQMRLSG-VVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDP 628 (919)
Q Consensus 557 ~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 628 (919)
+. ..+..+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 00 011111111 122468999999999998865 3343 34566777778889999999999999887642 234
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSAC 704 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 704 (919)
..+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 567778899999999999999999876 34577899999999999999999999999998 4675 45677788889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhc
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-------S-MHRALLGACRVQ 775 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~ 775 (919)
...|++++|...|+..... .+.+...|..+..++...|++++|++.+++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998763 2334788999999999999999999999885 444421 1 112222223446
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
|++++|...++++++++|++..++..|+.+|...|++++|.+.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887654
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1e-13 Score=153.79 Aligned_cols=688 Identities=15% Similarity=0.110 Sum_probs=356.5
Q ss_pred chhhHHHHHHHhCCChhHHHHHhccCCC------CCc---chH--HHHHHHHHhcC------CCCCCChhHHHHHHHHHH
Q 002460 89 FLTNNLMTMYSRCGSLVYARRLFDKMPD------RDL---ISW--NSILAAYAHSG------EGNAENVTEGFRLFRSLR 151 (919)
Q Consensus 89 ~~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~---~~~--n~li~~~~~~g------~~~~~~~~~A~~~~~~m~ 151 (919)
.+|......|.+.|..++...+++.-.. .|+ ..| +.+-..|++.+ ....+.+..|..+|....
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 3577777788888888888888876541 121 122 22222232222 000112334444554433
Q ss_pred hcCCCCC-cccHHHHHHHhhcCC--ChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCC------
Q 002460 152 ESITFTS-RLTLAPLLKLCLSSG--YVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQE------ 222 (919)
Q Consensus 152 ~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------ 222 (919)
.-....+ ..++.... |...| +++.|.+.+..+.+.. ++++...---.......|++..|..+|.....
T Consensus 122 ki~m~~~~~l~~~~~~--~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGF--LLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HhhccCcchhhhhhhh--hhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 2211111 11111111 12223 2467777777777664 23332221112223345888899988887432
Q ss_pred CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcch-hHHHHHHHHHHHhhhcCCCCcchhh
Q 002460 223 RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKR-HEEQVQAYAIKLLLYNNNSNVVLWN 301 (919)
Q Consensus 223 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~n 301 (919)
+|+. -.+-.++.+.|+.+.|+..|.+..+ +.|+.+.-...|.-+...-.. .....-...+...+..+..|.+.-|
T Consensus 199 aD~r--Igig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~ 274 (1018)
T KOG2002|consen 199 ADVR--IGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN 274 (1018)
T ss_pred CCcc--chhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH
Confidence 2332 1222456688899999999998887 556333222222222221111 1222222223334556667889999
Q ss_pred hHhHhhhhcCChhhHHHHHHHHHhhcCCC--CchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 302 KKLSGYLQVGDNHGAIECFVNMIRSNVQY--DSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
.|.+.|.-.|+++.++.+...+......- -...|--+-.++-..|+++.|.+.+-...+..-..-+..+--|..+|.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 99999999999999999999888654221 1235666778888999999999998766554322212333456677777
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNG----SMAEAEYLFENKDGF 455 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~ 455 (919)
.|++ +.+..-+..+.+.. +-+..+...|...|+..+ ..+.|..+......+
T Consensus 355 ~~dl------------------------e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 355 RGDL------------------------EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred hchH------------------------HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 6643 22222222222211 123344444444454443 345555555444333
Q ss_pred ---CcchHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHh---CCCC
Q 002460 456 ---DLATWNAMIFGYILSNNSHKALELFSHMH----TSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKS---GFEL 525 (919)
Q Consensus 456 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~ 525 (919)
|...|-.+...|-+. ++..++..|.... ..+-.+.+...+.+-...-..|++..|...+..+... ...+
T Consensus 410 ~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 334454444444433 3333355444332 3343455555555555555666666666666555443 1112
Q ss_pred Ch------hHHHHHHHHHHHcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhc-CCCCCHhH
Q 002460 526 DL------CVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLS-GVVPDEFT 595 (919)
Q Consensus 526 ~~------~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t 595 (919)
|. .+--.|...+-..++.+.|.+.|..+.+ |+-+ .|--+...-...+...+|...+++.... .-.|+..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 21 1112233444444556666666665543 2211 2222221112234455566666555442 12233222
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhcHHHHHHHH------------cCCHHHHHHHHHhCCC---CCe
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGISLVDMYAK------------CGNIEDAYILFKQMDM---RNT 659 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~------------~g~~~~A~~~~~~~~~---~~~ 659 (919)
.+-..+.....+..|..-+..+.+. ...+|.+..-+|.+.|.. .+..++|+++|.++.. +|.
T Consensus 569 --l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 569 --LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred --HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 2222333444444444433333322 112455555555554432 2345667777776652 355
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
.+=|-+...++..|++.+|..+|.+..+.. .-+..+|..+..+|...|.+-.|++.|+...+++.-.-+.....+|..+
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 566667777777777777777777777653 2344566777777777777777777777777766655567777777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 740 LGRAGRTKEAGELILSM-PFEASAS--MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
+-++|.+.+|.+.+... ...|... .++..+ ...+..+.++...+ ..+=.+-...+..+.|.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~----------v~kkla~s~lr~~k------~t~eev~~a~~~le~a~ 789 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL----------VLKKLAESILRLEK------RTLEEVLEAVKELEEAR 789 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH----------HHHHHHHHHHhccc------ccHHHHHHHHHHHHHHH
Confidence 77777777777665543 3333221 111111 11223333333333 12223444556778888
Q ss_pred HHHHHHHhCCCC
Q 002460 817 SARGEMKRKNVK 828 (919)
Q Consensus 817 ~~~~~m~~~~~~ 828 (919)
++|..|...+-+
T Consensus 790 r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 790 RLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcCCC
Confidence 888888776655
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=1.7e-16 Score=176.49 Aligned_cols=290 Identities=13% Similarity=0.096 Sum_probs=199.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHHc
Q 002460 464 IFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD---LCVSSGILDMYVKC 540 (919)
Q Consensus 464 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~ 540 (919)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566788888888888887753 12333555566666666666666666666655322111 13445556666666
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHA 617 (919)
Q Consensus 541 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 617 (919)
|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.++++.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 666666666665543 3444556666666666666666666666555432221100
Q ss_pred HHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 002460 618 NLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD- 693 (919)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 693 (919)
....+..+...|.+.|++++|...|+++.+ | +...+..+...|.+.|++++|+++|+++.+. .|+
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 247 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEY 247 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Chhh
Confidence 011234467778888888888888888763 2 3557777888999999999999999999875 344
Q ss_pred -hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 002460 694 -SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGA 771 (919)
Q Consensus 694 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~ 771 (919)
..++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+...+..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 356788889999999999999999998764 577777788999999999999999999875 667888888888877
Q ss_pred HHh---cCCHHHHHHHHHHHHh
Q 002460 772 CRV---QGDTETGKWVAEKLMA 790 (919)
Q Consensus 772 ~~~---~g~~~~a~~~~~~~~~ 790 (919)
+.. +|+.+++...++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 654 4577888777777664
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=1e-15 Score=178.54 Aligned_cols=352 Identities=11% Similarity=0.010 Sum_probs=274.3
Q ss_pred HhcCCHHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHH
Q 002460 437 CRNGSMAEAEYLFENKDGF------DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQ 510 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 510 (919)
.+..+++.---.|...++. +..-...++..+.+.|++++|+.+++........+. ..+..+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3445566555556555442 233455677888999999999999999988654333 344444566667999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 002460 511 GKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLS 587 (919)
Q Consensus 511 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 587 (919)
|...+..+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 45567788889999999999999999998764 35668888999999999999999999988775
Q ss_pred CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehH
Q 002460 588 GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNA 664 (919)
Q Consensus 588 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 664 (919)
...+.. .+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 433222 2222 334778899999999999887765444445555567889999999999999998763 35667888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 002460 665 MLVGLAQHGNGEE----TLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVD 738 (919)
Q Consensus 665 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~ 738 (919)
+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999999999986 8999999998 56754 47888899999999999999999998763 454 667778899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 739 ALGRAGRTKEAGELILSM-PFEASASMHRA-LLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|...++++++.+|++..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999887 45676544443 456788889999999999999999998643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.2e-15 Score=177.30 Aligned_cols=394 Identities=10% Similarity=0.036 Sum_probs=295.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 002460 424 ADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK 500 (919)
Q Consensus 424 ~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 500 (919)
.+.....-.+......|+.++|.+++.+... .+...+..+...+.+.|++++|..+|++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555667778888999999999988654 234458999999999999999999999988742 233455666777
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChhHH
Q 002460 501 ACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A 577 (919)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7889999999999999998874 44555 88889999999999999999998864 3 555667788888899999999
Q ss_pred HHHHHHHHhcCCCCCHh------HHHHHHHHH-----cccccH---HHHHHHHHHHHHc-CCCCCchh--hcHH---HHH
Q 002460 578 LSIYHQMRLSGVVPDEF------TFAILVKAS-----SCLTAL---EQGRQIHANLIKL-DCSSDPFV--GISL---VDM 637 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~--~~~l---i~~ 637 (919)
++.+++... .|+.. ....++... ...+.+ ++|.+.++.+.+. ...|+... ..+. +..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 998886653 33320 111122222 122233 6778788777754 22333211 1111 224
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---ee-eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHhccC
Q 002460 638 YAKCGNIEDAYILFKQMDMRN---TV-LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-----VTFIGVLSACSYTG 708 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g 708 (919)
+...|++++|+..|+.+...+ +. .--.+...|...|++++|+..|+++.+. .|.. .....+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcc
Confidence 457799999999999998542 11 1122577899999999999999998874 3432 34566677889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 002460 709 LVSEAYENFHLMREKYG----------IEPE---VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACR 773 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 773 (919)
++++|.++++.+.+... -.|+ ...+..+..++...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999976410 1122 234567888999999999999999997 3344 5678999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
..|+.++|+..++++++++|+++..+..++.++...|+|++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888764
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=2.3e-14 Score=156.59 Aligned_cols=281 Identities=13% Similarity=0.016 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCCCCh------hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC--HhHHHHH
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPAPDD------VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD--EFTFAIL 599 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~l 599 (919)
..|..||+.......++.|..+.+++..+|. .-+..+.+.+.+.+....+..++.+|.+.-..-+ ..++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5688899999999999999999999886544 3577888889999999999999999987432222 4566677
Q ss_pred HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CC---CeeeehHHHH------
Q 002460 600 VKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MR---NTVLWNAMLV------ 667 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~---~~~~~~~li~------ 667 (919)
++.-+..|..+.-.++++.+...|+.-+ ..++....+.++...|.++++... ++ +...|..++.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 8888888999999999999888887552 334555667777777777766543 11 1112222211
Q ss_pred ------------HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 002460 668 ------------GLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF 735 (919)
Q Consensus 668 ------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 735 (919)
.|.+.|++.+|-++.+. .|+.- -+.- .-|...|.+.--....+.+.+ ..+..-
T Consensus 648 ~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~r~----r~~R-Dr~~de~e~~~lEll~elt~~-------lg~~dR 712 (1088)
T KOG4318|consen 648 PQKTMDLSIPIQKFEKLGSCVDAGDITET---PGVRC----RNGR-DRDTDEGEIVPLELLLELTHE-------LGKNDR 712 (1088)
T ss_pred HHHHHhhcchhHHHHhcccccchhhcccc---Ccccc----cCCC-ccccccCccccHHHHHHHHhH-------hHHHHH
Confidence 12222222222111110 00000 0000 112222222222222222222 122334
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCch---HHHHHHHHhhc
Q 002460 736 LVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQG---DTETGKWVAEKLMALEPFDSSA---YVLLSNIFAAA 809 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~ 809 (919)
|+..|.+.|+++.|..++.+++..|+......|...++++. |+.++...-+++.++.|.++.+ |.--+-+..+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~ 792 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQT 792 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhH
Confidence 78899999999999999999998999999999999888775 6777888888888877665443 33334444444
Q ss_pred CCcchHHHHHHHHHhCCC
Q 002460 810 NQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 810 g~~~~a~~~~~~m~~~~~ 827 (919)
...+.|.+.+.+.++...
T Consensus 793 ~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 793 EQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 445567788888887743
No 22
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=5.9e-15 Score=161.14 Aligned_cols=645 Identities=14% Similarity=0.068 Sum_probs=348.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCC
Q 002460 144 FRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQER 223 (919)
Q Consensus 144 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 223 (919)
..++..|...|+.||.+||.+++.-||..|+++.|- ++..|.-..++-...++++++.+....++.+.+. +|
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 357788999999999999999999999999999998 9999998888889999999999999999988776 78
Q ss_pred CceeHHHHHHHHHHcCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhhhhcch--------hHHHHHHHHHH
Q 002460 224 DVVLWKVMLRAYAENGFGEEVFHLFVD-LH-------RSGLCPDDESVQCVLGVISDLGKR--------HEEQVQAYAIK 287 (919)
Q Consensus 224 ~~~~~n~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~~~--------~~~~~~~~~~~ 287 (919)
...+|+.|..+|.++|+... ++..++ |. ..|+.--..-|-.-+..|...-.. ..+.++...++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 333333 22 233333233333333333332211 12223333333
Q ss_pred HhhhcCCCCcchhhhHhHhhhhcC--ChhhHHHHHHHHHhhcC-CCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCC
Q 002460 288 LLLYNNNSNVVLWNKKLSGYLQVG--DNHGAIECFVNMIRSNV-QYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFY 364 (919)
Q Consensus 288 ~~~~~~~~~~~~~n~li~~~~~~g--~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 364 (919)
.+...++ ..|+.-...+.+.. ......++++ |.+.+. .|++.+|..++.+....|+.+.|+.++..|.+.|+.
T Consensus 161 ll~~~Pv---sa~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 161 LLAKVPV---SAWNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHhhCCc---ccccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3321111 11111111122221 1122233333 223333 599999999999999999999999999999999998
Q ss_pred ccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 002460 365 SAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAE 444 (919)
Q Consensus 365 ~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 444 (919)
.+..-+-.|+-+ .+....+..+...|...|+.|+..|+...+-.+.+.|....
T Consensus 237 ir~HyFwpLl~g---------------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---------------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred cccccchhhhhc---------------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 888777777655 34667788889999999999999999888777777665433
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCCChh-----HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 445 AEYLFENKDGFDLATWNAMIFGYILSNNSH-----KALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 445 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
+....+.--......+..+..+...+.+.+ -.+..+++..-.|+......|..... ....|.-+...++.+.+.
T Consensus 290 ~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 290 GEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred cccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhc
Confidence 332221111112223333333322222211 12222333333343333322222222 222455666666666554
Q ss_pred HhCCC---CChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChh-hHH--H------------HHHHHHHcCChhHHHHHH
Q 002460 520 KSGFE---LDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDV-AWT--T------------MISGCVDNGEEDLALSIY 581 (919)
Q Consensus 520 ~~g~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~--~------------li~~~~~~g~~~~A~~~~ 581 (919)
.--.. .++..+..++.-| |.++..+... .++ . .+.-++..-+...++.-+
T Consensus 369 npt~r~s~~~V~a~~~~lrqy------------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~l 436 (1088)
T KOG4318|consen 369 NPTLRDSGQNVDAFGALLRQY------------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQL 436 (1088)
T ss_pred CCccccCcchHHHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHH
Confidence 32211 1222333333333 3333222111 111 0 000011111111111111
Q ss_pred HHHHh----cCCCC-------CHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 582 HQMRL----SGVVP-------DEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 582 ~~m~~----~g~~p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
..... .-..| =...-+.++..|++.-+..+++..-+.....-+. ..|..||+..+...++++|..+
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~ 513 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSF 513 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhc
Confidence 11100 00000 0011233444444444444444333332222211 4566777777777777777777
Q ss_pred HHhCCCCCe------eeehHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 651 FKQMDMRNT------VLWNAMLVGLAQHGNGEETLKLFEDMKAHGV-EPD-SVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 651 ~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
.++...+|. .-+..+.....+++....+..+++++.+.-. .|+ ..++--+++.-...|..+.-.++++-+..
T Consensus 514 ~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs 593 (1088)
T KOG4318|consen 514 VDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS 593 (1088)
T ss_pred hhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 777765532 3456666677777777777777777766321 222 23455566666666776666666665554
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH------------
Q 002460 723 KYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQ--GDTETGKWVAE------------ 786 (919)
Q Consensus 723 ~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~------------ 786 (919)
+|+.-+ .-++....+.++...|.+..+.- ..+|.+.....+.....++ .+++.+.....
T Consensus 594 -lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~ 668 (1088)
T KOG4318|consen 594 -LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCV 668 (1088)
T ss_pred -hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhccccc
Confidence 244332 22333444556666655554433 2344444333333333322 12222211111
Q ss_pred ------------------------------HHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHH
Q 002460 787 ------------------------------KLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIF 836 (919)
Q Consensus 787 ------------------------------~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~ 836 (919)
..+++- ++.+....|...|...|+|+.|..+|.+|. +.|. ++-.
T Consensus 669 ~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~--~~~l 742 (1088)
T KOG4318|consen 669 DAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKS--PMKL 742 (1088)
T ss_pred chhhccccCcccccCCCccccccCccccHHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcc--hHHH
Confidence 111100 022234457789999999999999998776 4444 3444
Q ss_pred HHHHHHHHHHHhCCcccCC
Q 002460 837 AKVEGLIKRIKEGGYVPDT 855 (919)
Q Consensus 837 ~~l~~l~~~~~~~g~~p~~ 855 (919)
-+|.++.+++.+.--+|.+
T Consensus 743 ~~LAsIlr~~n~evdvPe~ 761 (1088)
T KOG4318|consen 743 FHLASILRRMNEEVDVPEI 761 (1088)
T ss_pred HHHHHHHHhhchhccchhH
Confidence 5555665555444444443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.4e-14 Score=172.99 Aligned_cols=370 Identities=10% Similarity=0.000 Sum_probs=267.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENK---DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKA 501 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 501 (919)
+...+..+...+.+.|++++|..+|++. ...+...+..++..+...|++++|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445667777777788888888888873 2335566777888888888888888888888775 3433336666677
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-CCh------hhHHHHHHHH-----H
Q 002460 502 CGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-PDD------VAWTTMISGC-----V 569 (919)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~------~~~~~li~~~-----~ 569 (919)
+...|+.++|...+..+++.. +.+..+...+...+.+.|..++|.+.++.... |+. .....++..+ .
T Consensus 126 l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 778888888888888888865 34555666788888889999999999987775 211 0111222222 1
Q ss_pred HcCCh---hHHHHHHHHHHhc-CCCCCHh-HHH----HHHHHHcccccHHHHHHHHHHHHHcCCC-CCchhhcHHHHHHH
Q 002460 570 DNGEE---DLALSIYHQMRLS-GVVPDEF-TFA----ILVKASSCLTALEQGRQIHANLIKLDCS-SDPFVGISLVDMYA 639 (919)
Q Consensus 570 ~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~ 639 (919)
..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+.+ |+- ....+...|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 22334 7789999998864 2233321 111 1134455678999999999999887632 322 2223678899
Q ss_pred HcCCHHHHHHHHHhCCCCCe-------eeehHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCh---hHHH
Q 002460 640 KCGNIEDAYILFKQMDMRNT-------VLWNAMLVGLAQHGNGEETLKLFEDMKAHG-----------VEPDS---VTFI 698 (919)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~ 698 (919)
..|++++|+..|+++...+. ..+..+..++...|++++|+++++++.+.. -.|+. ..+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999998764321 234556668899999999999999998742 11232 2345
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQG 776 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 776 (919)
.+...+...|+.++|+++++++... .+-+...+..+..++...|++++|++.+++. ...|+ ...+..+.......|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 6677888999999999999999763 3345788999999999999999999999987 56675 567777777888899
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHH
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
++++|+..++++++..|+++.+..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999886543
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=5.9e-15 Score=172.20 Aligned_cols=325 Identities=12% Similarity=0.001 Sum_probs=264.6
Q ss_pred HhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHH
Q 002460 492 EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGC 568 (919)
Q Consensus 492 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 568 (919)
......++..+...|+++.|..++..++.....+ ......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778888999999999999988876444 44455566777789999999999999864 3556788889999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHH
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 647 (919)
.+.|++++|++.|++..+. .|+ ...+..+...+...|+.++|...+..+......+....++ + ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-C-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-H-HHHHHcCCHHHH
Confidence 9999999999999999875 444 5567788889999999999999999887765443333322 3 347889999999
Q ss_pred HHHHHhCCCCC----eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH----HHHHHH
Q 002460 648 YILFKQMDMRN----TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSE----AYENFH 718 (919)
Q Consensus 648 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 718 (919)
...++.+...+ ...+..+..++...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999876432 233445567889999999999999999984 564 4577788889999999986 799999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 719 LMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 719 ~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
...+ +.|+ ...+..+..++.+.|++++|...+++. ...| +..++..+..++...|++++|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8875 4554 778999999999999999999999986 4455 45677788888999999999999999999999998
Q ss_pred CchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 796 SSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 796 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
+..+..++.++...|++++|...++...+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8777778999999999999999998876553
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.1e-13 Score=162.49 Aligned_cols=435 Identities=13% Similarity=0.026 Sum_probs=292.6
Q ss_pred hhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 300 WNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 300 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
+......+.+.|++++|++.|++..+ +.|+...|..+-.++.+.|+++.|...+...++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----------------- 190 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----------------- 190 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----------------
Confidence 44557778899999999999998775 45677777777777888888888877776665431
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---D 456 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~ 456 (919)
+.+...+..+..+|...|++++|..-|...... +
T Consensus 191 -------------------------------------------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 191 -------------------------------------------PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred -------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 124556777888888888888888777543221 1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHH
Q 002460 457 LATWNAMIFGYILSNNSHKALELFSHMHTSG--ERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGIL 534 (919)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 534 (919)
......++..+.. ..+........+.. ..|........+..+. ......-+... ...+......++
T Consensus 228 ~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~ 295 (615)
T TIGR00990 228 NEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPRPAGLEDS----NELDEETGNGQL 295 (615)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc----CCcchhhhhcc----cccccccccchH
Confidence 1111122211111 22222233332221 1112111112211110 11111001100 011111111111
Q ss_pred HHH------HHcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-HhHHHHHHH
Q 002460 535 DMY------VKCGAMVDAQSIFNDIPA------PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD-EFTFAILVK 601 (919)
Q Consensus 535 ~~y------~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 601 (919)
..+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++.++. .|+ ...|..+..
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~ 373 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 111 234688999999987653 24457888888999999999999999999875 454 457778888
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEET 678 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 678 (919)
.+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999988764 34567888899999999999999999998863 3466788888999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHH
Q 002460 679 LKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-E-------HYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~y~~li~~~~r~g~~~eA 749 (919)
+..|++.++. .|+ ...+..+..++...|++++|.+.|+...+ +.|+. . .++.....+...|++++|
T Consensus 453 ~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 453 MATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999884 565 56888889999999999999999999875 33321 1 122223334457999999
Q ss_pred HHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 750 GELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 750 ~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+++++. ...|+. ..+..+...+...|++++|...+++++++.+.....+ ....|.+|.++....++
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 9999985 556644 5788899999999999999999999999987643322 22345566666544443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.9e-12 Score=143.87 Aligned_cols=407 Identities=13% Similarity=0.047 Sum_probs=270.1
Q ss_pred ccchhhhHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--C--cchHHHHHHHHHhCCChhHHH
Q 002460 404 PEGLHLSKQIHVHAIKNDTVAD--SFVSTALIDVYCRNGSMAEAEYLFENKDGF--D--LATWNAMIFGYILSNNSHKAL 477 (919)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~ 477 (919)
.+..+.+..+...++....... ...|--+..+|-..|++++|...|-+..+. | +..+--+.+.|.+.|+.+.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH
Confidence 3455566666666655442211 233555677777888888888887654432 2 334455677788888888888
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCC------HHHH
Q 002460 478 ELFSHMHTSGERLD-EITIATAVKACGCLL----MLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGA------MVDA 546 (919)
Q Consensus 478 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~------~~~A 546 (919)
..|+..... .|| ..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...- +..|
T Consensus 363 ~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 363 FCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 888887764 344 345555544554443 4455666666555543 4556666666666654332 2334
Q ss_pred HHHhccC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCCCHh------HHHHHHHHHcccccHHHHHHHH
Q 002460 547 QSIFNDI-PAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLS---GVVPDEF------TFAILVKASSCLTALEQGRQIH 616 (919)
Q Consensus 547 ~~~f~~m-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~~~~~~~~a~~~~ 616 (919)
..++... ...-+...|.+..-+...|.+++|...|.+.... -..+|.. +-..+.......++.+.|.+.+
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4333322 2355667788888888888888888888887654 2334432 2223444455667888888888
Q ss_pred HHHHHcCCCCCchhhcHHHHHHHHc-------CCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 617 ANLIKLDCSSDPFVGISLVDMYAKC-------GNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 617 ~~~~~~~~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
..+++... ..|++|.+. +...+|..++.... ..++..|.-+...|.+...+..|.+-|....
T Consensus 520 k~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 520 KSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 88877532 256666555 46668888888766 3567788888888888888888888777666
Q ss_pred HcC-CCCChhHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 002460 687 AHG-VEPDSVTFIGVLSACSY------------TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI 753 (919)
Q Consensus 687 ~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~ 753 (919)
+.- ..+|..+..+|.+.|.. .+..++|+++|.+..+ .-+-+...-+-+.-.++..|++.+|.++|
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHH
Confidence 532 23566666667665543 2345677777777765 22335666777888889999999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 754 LSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMAL--EPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 754 ~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.+.. ......+|-.+...|..+|++..|.++++..+.. ..+++.....|+.+|...|+|.+|.+......
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8872 2335568889999999999999999999998874 33467778889999999999999988765444
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=6.2e-14 Score=141.10 Aligned_cols=448 Identities=11% Similarity=0.020 Sum_probs=266.0
Q ss_pred cchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhCCCCcHh
Q 002460 119 LISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCL--SSGYVWAS-ETVHGYALKIGLVWDEF 195 (919)
Q Consensus 119 ~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a-~~i~~~~~~~g~~~~~~ 195 (919)
+.+=|.++...++ | ...++.-+|++|+..|+..+...-..+++..+ ...++-.+ .+.+-.|.+.| +.+..
T Consensus 116 V~~E~nL~kmIS~-~-----EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~ 188 (625)
T KOG4422|consen 116 VETENNLLKMISS-R-----EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTS 188 (625)
T ss_pred hcchhHHHHHHhh-c-----ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccc
Confidence 4566777776554 5 69999999999999998887776666665443 22222222 22233333333 22222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcc
Q 002460 196 VSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGK 275 (919)
Q Consensus 196 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 275 (919)
+| |.|++.+ -+|+ ..-+...+|.+||.|.|+--..+.|.+++++-++...+.+..+|+.+|.+.+-.-
T Consensus 189 sW--------K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 189 SW--------KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV- 256 (625)
T ss_pred cc--------ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-
Confidence 33 4565544 4444 4445667999999999999999999999999999889999999999976543221
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHH----
Q 002460 276 RHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLG---- 351 (919)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a---- 351 (919)
-.+++.+|....+.||..|||+++++.++.|+++.+
T Consensus 257 ----------------------------------------~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa 296 (625)
T KOG4422|consen 257 ----------------------------------------GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA 296 (625)
T ss_pred ----------------------------------------cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH
Confidence 156667777777777777777777777777765543
Q ss_pred HHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCC----CCchh
Q 002460 352 QQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDT----VADSF 427 (919)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~----~~d~~ 427 (919)
.+++.+|.+.|++|...+|..+|..+++.++... .......+|.+.+-...+ +.|..
T Consensus 297 lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k-------------------~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 297 LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK-------------------VASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh-------------------hhHHHHHHHHHhhccCcccCCCCchhH
Confidence 4667777777777777777777777766653210 011111222222222222 22334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 002460 428 VSTALIDVYCRNGSMAEAEYLFENKDG--------FD---LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIA 496 (919)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~f~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 496 (919)
-+..-++.|.+..+.+.|.++-.-... ++ ..-|..+....++....+.-+..|+.|.-.-.-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 445556666677777777666433221 11 2235567777888888899999999998888889999999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHH--cCCh
Q 002460 497 TAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVD--NGEE 574 (919)
Q Consensus 497 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~ 574 (919)
.++++....+.++...+++..++..|...+.....-++...++.. +.|+...-.-+-...++ ..-.
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888775444433333333333222 11221110011111110 0001
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC-CCCchhhcHH---HHHHHHcCCHHHHHHH
Q 002460 575 DLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC-SSDPFVGISL---VDMYAKCGNIEDAYIL 650 (919)
Q Consensus 575 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l---i~~y~~~g~~~~A~~~ 650 (919)
+.....-.+|.+....| ..++.++-.+.+.|..++|.+++..+.+.+- .|-....|+| ++.-.+..+...|..+
T Consensus 506 e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 11111222333333333 2334444445566666666666666644332 2333344433 3344455666666666
Q ss_pred HHhCCCCC
Q 002460 651 FKQMDMRN 658 (919)
Q Consensus 651 ~~~~~~~~ 658 (919)
++-|...|
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 66665433
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.6e-13 Score=160.07 Aligned_cols=417 Identities=10% Similarity=0.011 Sum_probs=282.1
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchH-HHH--HHHHHhCCChhHHHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATW-NAM--IFGYILSNNSHKALELFS 481 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~~~~ 481 (919)
+....+...+.++++....-.+.++ .++..+...|+.++|+..+++...++...+ ..+ ...|...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566777777777766554433444 777777778888888888888776543333 333 346777788888888888
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--C-Ch
Q 002460 482 HMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--P-DD 558 (919)
Q Consensus 482 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~ 558 (919)
++.+.. +-+...+..+...+...++.++|.+.+..+.+.. |+...+..++..+...++..+|.+.++++.+ | +.
T Consensus 127 kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 127 SSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 887753 2224455566667777788888888877776653 3444444555555555666568888877763 3 45
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH------HHHHHHHH-----ccccc---HHHHHHHHHHHHH-cC
Q 002460 559 VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFT------FAILVKAS-----SCLTA---LEQGRQIHANLIK-LD 623 (919)
Q Consensus 559 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~a~-----~~~~~---~~~a~~~~~~~~~-~~ 623 (919)
..+..+..++.+.|-...|+++..+-... +.|...- ....+..- ....+ .+.|..-++.+.. .+
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 56667777778888888887766542111 1111100 11111100 01112 2334444444433 12
Q ss_pred CCCC-chh-hcH---HHHHHHHcCCHHHHHHHHHhCCCCC----eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCC----
Q 002460 624 CSSD-PFV-GIS---LVDMYAKCGNIEDAYILFKQMDMRN----TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGV---- 690 (919)
Q Consensus 624 ~~~~-~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 690 (919)
-.|. ... ..+ .+-++.+.|++.++++.|+.+.... ..+--++..+|...+++++|+.+|+++....-
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232 111 223 3446678899999999999998432 23556788999999999999999999976431
Q ss_pred CC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 691 EP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYG----------IEPE---VEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 691 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
.| +......|..++...+++++|..+++.+.+... -.|+ ...+..++..+.-.|++.+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12 223357788899999999999999999987311 0122 345566788888999999999999997
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 757 -PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 757 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
...| |..++..+...++..|....|+..++.+..++|++..+...++.++...|+|++|..+.+...+.-
T Consensus 443 ~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 443 SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 3444 788899999999999999999999999999999999999999999999999999998887766553
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=1.9e-12 Score=151.30 Aligned_cols=428 Identities=10% Similarity=0.003 Sum_probs=289.2
Q ss_pred hHhhhhcCChhhHHHHHHHHHhhcCCCCc--hhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcC
Q 002460 304 LSGYLQVGDNHGAIECFVNMIRSNVQYDS--VTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMG 381 (919)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g 381 (919)
+-...+.|++++|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+ .|+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~------------- 100 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNI------------- 100 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCC-------------
Confidence 334578899999999999887653 443 233 66666667788888877776654 22111
Q ss_pred ccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Ccc
Q 002460 382 CVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLA 458 (919)
Q Consensus 382 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~ 458 (919)
+......+...|...|++++|.++|+++.+. |..
T Consensus 101 -------------------------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 101 -------------------------------------------SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred -------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 1112222344566667777777777775543 344
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 002460 459 TWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYV 538 (919)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 538 (919)
.+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.. +.+...+..++....
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5566667777777777777777777653 4454455333333333445545777777777764 445666677777777
Q ss_pred HcCCHHHHHHHhccCCC---CChhhH--HHHHHHHH---------HcCC---hhHHHHHHHHHHhc-CCCCCH-hHH---
Q 002460 539 KCGAMVDAQSIFNDIPA---PDDVAW--TTMISGCV---------DNGE---EDLALSIYHQMRLS-GVVPDE-FTF--- 596 (919)
Q Consensus 539 ~~g~~~~A~~~f~~m~~---~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~--- 596 (919)
+.|-...|.++..+-+. +...-| ...+.-.. ..++ .+.|+.-++.+... +-.|.. .-|
T Consensus 215 ~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 215 RNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA 294 (822)
T ss_pred HcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH
Confidence 78877777777766552 111111 00000111 1122 24456666665542 222322 211
Q ss_pred -HHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---------eeeehHHH
Q 002460 597 -AILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---------TVLWNAML 666 (919)
Q Consensus 597 -~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li 666 (919)
.=-+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|+++...+ ......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 22355777888999999999999988877677788889999999999999999999875321 22246688
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------CC--Chh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGV-----------EP--DSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH 732 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 732 (919)
-+|...+++++|..+++++.+.-. .| |-. .+..++..+.-.|++.+|++.++.+... -+-|...
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l 452 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNL 452 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 899999999999999999987311 13 222 3445566788999999999999999753 3346889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 799 (919)
...+.+++...|++.+|++.++.. ...|+ ..+...+..+....+++++|+.+.+++++..|+++.+-
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999876 45675 45566777778888999999999999999999988543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.8e-12 Score=129.41 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=159.1
Q ss_pred HHHHHHhhcCCCchhhhHHHHHHHhcCCCCCcchhhHHHHH---HHhCCCh------------------------hHHHH
Q 002460 57 FSILRHAISTSDLLLGKSTHARILNSSQIPDRFLTNNLMTM---YSRCGSL------------------------VYARR 109 (919)
Q Consensus 57 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---y~~~g~~------------------------~~A~~ 109 (919)
+++++. .+++.+..+--+|..|...|...+.-+--.|+.. |-...-+ +-|.-
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 444443 5667788888889998888766555444433332 2211111 11222
Q ss_pred HhccCCCCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhC
Q 002460 110 LFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIG 189 (919)
Q Consensus 110 ~f~~m~~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g 189 (919)
+|+..| ++..++.+||+|+|+-- ..+.|.++|.+..+...+.+..+||.+|.+.+ +..++.+..+|+...
T Consensus 199 ~~E~~P-KT~et~s~mI~Gl~K~~-----~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 199 LFETLP-KTDETVSIMIAGLCKFS-----SLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHhhcC-CCchhHHHHHHHHHHHH-----hHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 333322 35567888888888887 78888888888888888888888888887654 334478888888888
Q ss_pred CCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002460 190 LVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGV 269 (919)
Q Consensus 190 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 269 (919)
+.||.+++|++++..++.|+++.|++. |++++.+|++.|+.|.-.+|..+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~i--- 318 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLI--- 318 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHH---
Confidence 888888888888888888888887765 67889999999999987777777
Q ss_pred hhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhh-HHHHH----HHHHhhcCCC----CchhHHHHhh
Q 002460 270 ISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHG-AIECF----VNMIRSNVQY----DSVTFLVALA 340 (919)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~-A~~l~----~~m~~~g~~p----d~~t~~~ll~ 340 (919)
|..+++.++..+ |..++ +.+..+.++| |..-|...++
T Consensus 319 ----------------------------------ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 319 ----------------------------------IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred ----------------------------------HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 455555555432 33333 3333334444 4567788899
Q ss_pred hhcCCCChhHHHHHHHHHHH
Q 002460 341 AVAGTDNLNLGQQIHGTTLK 360 (919)
Q Consensus 341 ~~~~~g~~~~a~~~~~~~~~ 360 (919)
.|....|.+.|.++++.+..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999987654
No 31
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.60 E-value=4e-16 Score=135.40 Aligned_cols=63 Identities=59% Similarity=0.823 Sum_probs=57.3
Q ss_pred HHHHHHHhCCcccCCCcccccCCHHHH--------HHhHhhhhHHHHHHHhhccCCCCCcEEEEcC--------------
Q 002460 841 GLIKRIKEGGYVPDTDFVLLDVEEEEK--------ERALYYHSEKLARAYGLISTPPSSVILSNKE-------------- 898 (919)
Q Consensus 841 ~l~~~~~~~g~~p~~~~~~~~~~~~~k--------~~~~~~hse~la~~~~~~~~~~~~~~~~~kn-------------- 898 (919)
++..++...||.|++..++|+++++++ +..+++||||||+|||||++ ||+||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~ 95 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKF 95 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHH
Confidence 567778889999999999999988876 67999999999999999999 99998
Q ss_pred --------C--ccCCcccccc
Q 002460 899 --------P--LYANRFHHLR 909 (919)
Q Consensus 899 --------i--rd~~r~h~f~ 909 (919)
| ||++||||||
T Consensus 96 iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 96 ISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHHHCeEEEEeCCCeeeeCC
Confidence 4 9999999997
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-11 Score=125.46 Aligned_cols=277 Identities=12% Similarity=0.074 Sum_probs=202.8
Q ss_pred HHHHcCCHHHHHHHhccCCCCChhhHHHHH-----HHHHHc-CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccH
Q 002460 536 MYVKCGAMVDAQSIFNDIPAPDDVAWTTMI-----SGCVDN-GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTAL 609 (919)
Q Consensus 536 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 609 (919)
-|.+.|+++.|.++++-..+.|..+-++-. --|.+- .++.+|.+.-+..+... .-+....+.--...-..|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467788888888877766655443322211 112222 24455555544443221 11222222112223346788
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
++|.+.+.+.+...-......|| +.-.+-+.|++++|+..|-.+. ..++...-.+.+.|-...+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 89988888888766555555555 4556788999999999998765 4567777788888999999999999998876
Q ss_pred HcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 002460 687 AHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS 763 (919)
Q Consensus 687 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~ 763 (919)
. +-| |+....-|...|-+.|+-..|.+++-.- |..-| +.++...|..-|....-+++|...|++. -++|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6 556 6668888999999999999999876554 44445 6899999999999999999999999997 5799999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 764 MHRALLGACR-VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 764 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
-|..++..|. +.|++++|...++.+....|+|-.....|..++...|.- ++.++-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 9999999885 559999999999999999999999999999999888863 3444443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=6.1e-10 Score=123.64 Aligned_cols=614 Identities=12% Similarity=0.100 Sum_probs=304.7
Q ss_pred HHhCCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCC-CcccHHHHHHHhhcCC
Q 002460 98 YSRCGSLVYARRLFDKMPD---RDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFT-SRLTLAPLLKLCLSSG 173 (919)
Q Consensus 98 y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 173 (919)
+++ |++++|.+++.++.+ .+...|-+|-..|-+.| +.+++..++-.. ....| |..-|..+-.-....|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-----d~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-----DIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-----cHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcc
Confidence 344 899999999888753 35668888888898888 888887765433 22333 2344555556666777
Q ss_pred ChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCc-eeH-------HHHHHHHHHcCCchHHH
Q 002460 174 YVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDV-VLW-------KVMLRAYAENGFGEEVF 245 (919)
Q Consensus 174 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~~~-------n~li~~~~~~g~~~~A~ 245 (919)
.+..|.-.+..+++.. +++....---..+|-+.|+...|..-|.++-+.+. +.| --++..|...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7777777777777765 33444444456667777777777766666544222 111 11233444455555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHh
Q 002460 246 HLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIR 325 (919)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 325 (919)
+.++.....+ .+.-+...+|.++..|.+...++.|......+..
T Consensus 301 ~~le~~~s~~------------------------------------~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 301 KALEGALSKE------------------------------------KDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHhhc------------------------------------cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5555544311 1223344567778888888888888888877776
Q ss_pred hcCCCCchhH----------------------H----HHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHh
Q 002460 326 SNVQYDSVTF----------------------L----VALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSK 379 (919)
Q Consensus 326 ~g~~pd~~t~----------------------~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k 379 (919)
...++|..-+ . -+.-++......+....+...+.+..+.
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~--------------- 409 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW--------------- 409 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---------------
Confidence 4333433322 0 1111122233333333333333333311
Q ss_pred cCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----
Q 002460 380 MGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---- 455 (919)
Q Consensus 380 ~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---- 455 (919)
+.-++..|.-+.++|...|++.+|..+|..+...
T Consensus 410 ------------------------------------------~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 410 ------------------------------------------VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ------------------------------------------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 1122333444444455555555555555443321
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHH--------HHHhCCCCC
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMHAY--------AMKSGFELD 526 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~--------~~~~g~~~~ 526 (919)
+...|--+..+|...|.+++|++.|.+.... .|+.. .-.++-..+...|+.++|.+.+.. ....+..|+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 3344555555555555555555555554432 22221 112222233344455555544444 122234444
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHhccCC--------------------------CCChhhHHHHHHHHHHcCChhHHHH-
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIP--------------------------APDDVAWTTMISGCVDNGEEDLALS- 579 (919)
Q Consensus 527 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~--------------------------~~~~~~~~~li~~~~~~g~~~~A~~- 579 (919)
....-...+.|.+.|+.++=..+-..|. .......-.++.+-.+.++.....+
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 605 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKA 605 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhc
Confidence 4444445555555555444222111111 0111111122222222222111110
Q ss_pred -----HHHHHHhcCCCCCH--hHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCc---hhhcHHHHHHHHcCCHHHH
Q 002460 580 -----IYHQMRLSGVVPDE--FTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDP---FVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 580 -----~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~li~~y~~~g~~~~A 647 (919)
.+.--...|+.-+. .-+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|
T Consensus 606 l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a 685 (895)
T KOG2076|consen 606 LSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDA 685 (895)
T ss_pred ccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 01111111121111 1233344555666666666666555544321 1111 1223344445556667777
Q ss_pred HHHHHhCCCC-----C---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH--HHHHhccCCHHHHHHHH
Q 002460 648 YILFKQMDMR-----N---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV--LSACSYTGLVSEAYENF 717 (919)
Q Consensus 648 ~~~~~~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~ 717 (919)
...+..|... + ...||...+.+.+.|+-.--.+.+..... ..|+......+ ..-....+.+..|...+
T Consensus 686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHH
Confidence 6666666532 2 33566655655555554443444433332 22322111111 12233455666666655
Q ss_pred HHhHHhcCCCCChhHHH-HHHHHHh----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHH
Q 002460 718 HLMREKYGIEPEVEHYS-FLVDALG----------RAGRTKEAGELILSMP-F-EA--SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 718 ~~m~~~~~~~p~~~~y~-~li~~~~----------r~g~~~eA~~~~~~m~-~-~p--~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
-... ...|+...++ ||.-++. |.-..-++..++.+.. . .+ ...++-.+..+|..-|=+..|.
T Consensus 764 ~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 764 MRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 4443 3445533333 2222221 1122334455554431 1 12 3456778889999999999999
Q ss_pred HHHHHHHhhCCCCCc------------hHHHHHHHHhhcCCcchHHHHHH
Q 002460 783 WVAEKLMALEPFDSS------------AYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 783 ~~~~~~~~~~p~~~~------------~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.++++++++.|.+-. +-..|.-+|..+|+.+-|..+.+
T Consensus 841 ~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 841 SYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 999999998764322 34467789999999998888774
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=2.4e-08 Score=106.74 Aligned_cols=427 Identities=10% Similarity=0.015 Sum_probs=229.4
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHH----HHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHH
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVN----MIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSL 373 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 373 (919)
..|-+-...--.+|+.+...+++++ +...|+..+..-|..=-.+|-..|..-.++.|...++..|++...
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed------ 514 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED------ 514 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch------
Confidence 3343334444456777777776654 445666666666655555555555555555555554444432210
Q ss_pred HHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 002460 374 INMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKD 453 (919)
Q Consensus 374 i~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~ 453 (919)
-..+|..-.+.|.+.+.++-|+.+|....
T Consensus 515 ---------------------------------------------------~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 515 ---------------------------------------------------RKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred ---------------------------------------------------hHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 12344444455555556666666665433
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHH
Q 002460 454 G---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVS 530 (919)
Q Consensus 454 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 530 (919)
+ .+...|...+..=-..|..++-..+|++....- +-...-+....+..-..|++..|+.++..+.+.. +.+..+|
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw 621 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW 621 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence 2 244556666655555666666666676666532 1122222222333333455555555555555543 2244455
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc
Q 002460 531 SGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA 608 (919)
Q Consensus 531 ~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 608 (919)
-+-+..-.....++.|+.+|.+.. .+....|.--+.-.--.+..++|++++++.++. -|+..
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~-------------- 685 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH-------------- 685 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH--------------
Confidence 555555555555555555555443 244444444444444445555555555555442 23322
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDM 685 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 685 (919)
-.|-.+...|-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.
T Consensus 686 --------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 686 --------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred --------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2333344555555555555555554432 2 2334555555555555666666666665
Q ss_pred HHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 002460 686 KAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMH 765 (919)
Q Consensus 686 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~ 765 (919)
.-.+ +-|...|...+..-.+.|..+.|..+..+..++ .+-+...|.--|.+..+.++-..+.+.+++-. .|+.+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVl 820 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVL 820 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhH
Confidence 5432 124445556666666666666666665555552 33345555556666666666555555555543 344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
-+....+....+++.|..-++++...+|++..+|..+-..+...|.-++-.+++++...
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 45555566666777777777777777777777777777777777776666666665543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=4e-09 Score=112.58 Aligned_cols=365 Identities=12% Similarity=0.069 Sum_probs=268.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhccC
Q 002460 434 DVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSH----MHTSGERLDEITIATAVKACGCLL 506 (919)
Q Consensus 434 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~ 506 (919)
-+|++..-++.|.++++...+ .+...|.+-...=-.+|+.+....++++ +...|+..+...+..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344555566777777765433 4667777766666677877777777655 345678888888877777888888
Q ss_pred chHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 507 MLKQGKQMHAYAMKSGFELD--LCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 507 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+-....+..-.+..|++.. ..+|+.-...+.+.+.++-|+.+|....+ .+...|...+..--.+|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888888887776543 45677777888888888888888876653 46667877777777788888888888
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCe
Q 002460 582 HQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNT 659 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 659 (919)
++.... ++-..+.+.......-..|++..|+.++..+.+.... +..++-+-+..-....++++|..+|.+.. .+..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 888775 3333444555555556678888888888888876643 66777778888888888999999988776 4567
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLV 737 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 737 (919)
..|.--+....-.++.++|++++++.++ .-|+.. .|..+...+-+.++++.|.+.|..=.+ ..|+ +..|-.|.
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLa 726 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLA 726 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHH
Confidence 7787777777778888999999988887 467765 677777788888888888887765533 3454 66788888
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 002460 738 DALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNI 805 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 805 (919)
++=.+.|.+-.|..++++. ..+.+...|-..+..-.++|+.+.|+...-++++--|++...|.--+.+
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 8888888888999988886 3344778888888888888999999888888887766544433333333
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=7e-14 Score=147.01 Aligned_cols=254 Identities=17% Similarity=0.154 Sum_probs=113.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCC
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILV-KASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGN 643 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 643 (919)
...+.+.|++++|++++++-.....+|+...|-.++ ..+-..++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344555566666666664433332234443333322 2333455666666666666554432 44455556666 68889
Q ss_pred HHHHHHHHHhCC--CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 644 IEDAYILFKQMD--MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSVTFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 644 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
+++|.+++...- .++...|..++..+.+.|+++++.++++++.+.. .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887764 3567788889999999999999999999987643 2345667788888899999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 721 REKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 721 ~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+. .|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 864 564 7788899999999999999888887651 2446678999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
....++.++...|+.++|..++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999986543
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=1.4e-09 Score=120.78 Aligned_cols=41 Identities=17% Similarity=0.356 Sum_probs=25.6
Q ss_pred CChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHH
Q 002460 208 GKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLF 248 (919)
Q Consensus 208 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~ 248 (919)
|++++|.+++.++.+ ++...|-+|...|-+.|+.+++...+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ 196 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW 196 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH
Confidence 666666666666554 34455666666666666666665544
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=5.7e-12 Score=135.31 Aligned_cols=271 Identities=14% Similarity=0.069 Sum_probs=125.2
Q ss_pred CHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHcccccHHHHHHHH
Q 002460 542 AMVDAQSIFNDIPA--PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLSGV--VPDEFTFAILVKASSCLTALEQGRQIH 616 (919)
Q Consensus 542 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~~~ 616 (919)
+..+|...|..++. +|+. ...-+..+|...+++++|.++|+...+... .-+...|.++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 34566666666543 3333 223345566677777777777777665321 11334555544322110 011111
Q ss_pred -HHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002460 617 -ANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP 692 (919)
Q Consensus 617 -~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 692 (919)
+.+++. -+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 111111 1233445555555555555555555555554421 334444444444555555555555555443 333
Q ss_pred Ch-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 002460 693 DS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRAL 768 (919)
Q Consensus 693 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l 768 (919)
+. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.|+|+++++++ ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 22 244444445555555555555555443 23442 334444444555555555555555554 2222 22111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
...+...++.++|...+|++.++-|+++.+|.+++.+|-+.|+.+.|..-+.-|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 222333345555555555555555555555555555555555555555444333
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.7e-10 Score=117.49 Aligned_cols=382 Identities=15% Similarity=0.102 Sum_probs=247.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcc
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDG--FD-LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCL 505 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~ 505 (919)
-...+-|.+.|++++|++.+....+ || ++-|.....+|...|++++..+.-.+.++ +.|+-+ .+..--++.-.+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445567888999999999987543 55 67788888899999999888776666655 344422 222333344455
Q ss_pred CchHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CCh-----------------------
Q 002460 506 LMLKQGKQMHAYA-MKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDD----------------------- 558 (919)
Q Consensus 506 ~~~~~a~~~~~~~-~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~----------------------- 558 (919)
|+++++..-..-. +-.|+... ....+++--.+.--..++.+-+.+-.. |..
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~--s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNA--SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccc--hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555543221111 11111100 000111111111111222222221000 111
Q ss_pred hhHHHHHHHHHH--cC---ChhHHHHHHHHHHhcC-CCC-----CHhHHHHHHHH-------HcccccHHHHHHHHHHHH
Q 002460 559 VAWTTMISGCVD--NG---EEDLALSIYHQMRLSG-VVP-----DEFTFAILVKA-------SSCLTALEQGRQIHANLI 620 (919)
Q Consensus 559 ~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g-~~p-----~~~t~~~ll~a-------~~~~~~~~~a~~~~~~~~ 620 (919)
.+.-.+..++.. .+ .+.+|.+.+.+-.... ..+ |... ..+..+ .--.|+.-.+.+-++.++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 112222222211 11 2334444433321110 011 1111 111122 223467778888888888
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VT 696 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 696 (919)
+....++. .|--+.-+|....+.++-...|+... ..|+.+|..-...+.-.+++++|..=|++.+. +.|+. ..
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYA 430 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHH
Confidence 86644333 25557778999999999999999876 34778888888888889999999999999998 67854 47
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS---------ASMHR 766 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~---------~~~~~ 766 (919)
|..+-.+..+.+.++++...|++.+.+ ++-.++.|+.....+..++++++|.+.++.. .++|+ +.+..
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 888888888999999999999999985 5556899999999999999999999999885 44444 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+++-.-++ +|+..|+.++.++++++|....+|..|+.+-...|+.++|+++|++-
T Consensus 509 a~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 509 ALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555444 89999999999999999999999999999999999999999999754
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.9e-10 Score=113.49 Aligned_cols=356 Identities=15% Similarity=0.106 Sum_probs=223.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHH--HHH
Q 002460 422 TVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIA--TAV 499 (919)
Q Consensus 422 ~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 499 (919)
...|...+-...-.+-+.|....|+..|.....+-+..|.+-+....-.-+.+.+.. .. .|...|...+. .+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHH
Confidence 344444444444455667778888888877655444444443322211112211111 11 11111111111 123
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALS 579 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 579 (919)
.++......+++.+-.......|++.+...-+-...++- .+.++++|+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y-------------------------------~~rDfD~a~s 283 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY-------------------------------NQRDFDQAES 283 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh-------------------------------hhhhHHHHHH
Confidence 344444455555555555555555444443333333333 3445566666
Q ss_pred HHHHHHhcCC-C-CCHhHHHHHHHHHcccccHHH-HHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC
Q 002460 580 IYHQMRLSGV-V-PDEFTFAILVKASSCLTALEQ-GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM 656 (919)
Q Consensus 580 ~~~~m~~~g~-~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 656 (919)
+|+++.+... . -|..||+.++-.-.....+.- |..+. .+ . +--+.+...+.+-|+-.++.++|...|++..+
T Consensus 284 ~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 284 VFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred HHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 6666655421 1 144566655543222111111 11111 11 1 12334666677888888889999999998774
Q ss_pred ---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Chh
Q 002460 657 ---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVE 731 (919)
Q Consensus 657 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 731 (919)
....+|+.|..-|...++...|++-+++.++ +.| |...|..|..+|.-.++..=|+-+|++..+ ++| |..
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchH
Confidence 3456899999999999999999999999988 566 777899999999999999999999988864 556 588
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCCchHHHH
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSMP--FEASASMHRALLGACRVQGDTETGKWVAEKLMA-------LEPFDSSAYVLL 802 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l 802 (919)
.|.+|.+.|.+.++++||++.+.+.- .+-+...+..|...+..-++.++|...+++.++ .+|+-..+-.-|
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 89999999999999999999998872 233457888888999999999999999998887 344444455668
Q ss_pred HHHHhhcCCcchHHHHHHHHH
Q 002460 803 SNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++-+-+.++|++|..+-....
T Consensus 514 A~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhhcchHHHHHHHHHHh
Confidence 888999999999987665444
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=2.4e-10 Score=125.82 Aligned_cols=244 Identities=9% Similarity=0.051 Sum_probs=148.5
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHhHHH--HHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHH
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPDEFTFA--ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 646 (919)
.+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+.++.+.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4556666666666665542 33332211 22334555566666666666555544 2334455556666666666666
Q ss_pred HHHHHHhCCCCCee-----------eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 002460 647 AYILFKQMDMRNTV-----------LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYE 715 (919)
Q Consensus 647 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 715 (919)
|.+++..+.+.... +|..++.......+.+...++++++.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666532111 2223333333344455555566655432 23355567777778888888888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 716 NFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 716 ~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
.+++..+. .|+.... ++......|+.+++.+.+++. +..| |+..+.++...|...+++++|+..++++++.+|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88777542 3444222 222223457888888888776 4445 445667777788888888888888888888888
Q ss_pred CCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 794 FDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 794 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+ ...|..|+.++.+.|+.++|..++++-
T Consensus 360 ~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 D-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 455778888888888888888887654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=7.7e-11 Score=126.77 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=196.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCchhhcHHHHHHHHcCCHHH-HH
Q 002460 572 GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDPFVGISLVDMYAKCGNIED-AY 648 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~ 648 (919)
-+.++|+..|.+.... +.-.......+..+|-..+++++++.+|+.+.+... ..+..+|.+.+-.+-+.=.+.- |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 333335566778899999999999999999977532 3466777777654433222221 22
Q ss_pred HHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002460 649 ILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE 727 (919)
Q Consensus 649 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 727 (919)
.+.+ +.+..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 3333 2345688999999999999999999999999998 678 56689988888888999999999998764 3
Q ss_pred CChhHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 728 PEVEHYSF---LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 728 p~~~~y~~---li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.++.||++ |.-.|.++++++.|+-.|+++ .+.| +.++...+...+.+.|+.++|...+++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 56667765 556788999999999999997 6777 456677777788888999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHhCC
Q 002460 803 SNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
+.++...+++++|...++++++.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=5.4e-10 Score=123.07 Aligned_cols=254 Identities=14% Similarity=-0.016 Sum_probs=158.3
Q ss_pred hccCchHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHH
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDLC--VSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLA 577 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 577 (919)
...|+.+.+.+.+..+.+. .|+.. ........+...|+.+.|...++++.+ .+......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555443 23322 222335566777777777777776653 2455666777777777888888
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-
Q 002460 578 LSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM- 656 (919)
Q Consensus 578 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 656 (919)
++++.++.+.+..++. .+..+-. ..|..++....+..+.+...++++..+.
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 8888777776544222 1110000 0111122223333445556666666652
Q ss_pred --CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002460 657 --RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS 734 (919)
Q Consensus 657 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 734 (919)
.++..+..+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...++ .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 35666777777788888888888888877763 444421 1233344557888888888777653 233466677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 735 ~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 792 (919)
++..++.+.|++++|.+.|+++ ...|+...+..|..++...|+.++|..++++.+.+-
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888776 567888777778888888888888888888887653
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=2.1e-09 Score=119.09 Aligned_cols=288 Identities=14% Similarity=0.053 Sum_probs=125.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHH
Q 002460 469 LSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQ 547 (919)
Q Consensus 469 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 547 (919)
..|+++.|.+.+.+..+. .|++. .+...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 23322 222333344455666666666655544321221223333344455555555555
Q ss_pred HHhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC
Q 002460 548 SIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC 624 (919)
Q Consensus 548 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 624 (919)
..++.+.+ | +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 55554432 2 3334444455555555555555555555544322111 1100000
Q ss_pred CCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH---H
Q 002460 625 SSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTF---I 698 (919)
Q Consensus 625 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 698 (919)
..+..+++.-......+...+.++..+. .+...+-.++..+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0000011111111223333444444442 35566666666777777777777777777663 4444321 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhc
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILS--M-PFEASASMHRALLGACRVQ 775 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~--m-~~~p~~~~~~~ll~~~~~~ 775 (919)
.........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ . ...|+..++..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112223444444444444433211111112333444444444444444444442 1 2344444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 002460 776 GDTETGKWVAEKL 788 (919)
Q Consensus 776 g~~~~a~~~~~~~ 788 (919)
|+.++|..++++.
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.3e-09 Score=110.78 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=89.1
Q ss_pred hHHHHH---HHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHH-HHhhcCCChhhHHHHHHHHHHhCCCCcH--
Q 002460 121 SWNSIL---AAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLL-KLCLSSGYVWASETVHGYALKIGLVWDE-- 194 (919)
Q Consensus 121 ~~n~li---~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~i~~~~~~~g~~~~~-- 194 (919)
+|+.+. .-|.-+. ...+|+..|+-.++....||...+-.-+ +.+.+.+.+..|...+...+..-...+.
T Consensus 200 tfsvl~nlaqqy~~nd-----m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEAND-----MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred hHHHHHHHHHHhhhhH-----HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 454443 4455555 7888888888888877777765443222 3445666777888888777665322222
Q ss_pred --hHHHHHHHHHHhcCChhHHHHHHhcCCC--CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhh
Q 002460 195 --FVSGALVNIYSKFGKIREAKFLFDGMQE--RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDES 262 (919)
Q Consensus 195 --~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (919)
.+.|.+--.+.+.|.+++|..-|+...+ ||..+--.||-++..-|+.++..+.|..|......||.-.
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 2345555566788899999988887654 6666533344455557888888888888887666666443
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.3e-07 Score=97.62 Aligned_cols=428 Identities=12% Similarity=0.059 Sum_probs=288.1
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHH
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLI 374 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 374 (919)
+++..|--.+..-.++.++..|..++++....-...|..-|- .+..=-..|++..|.++|+...+
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~-------------- 169 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWME-------------- 169 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHc--------------
Confidence 455667777888888889999999998876543333332221 11222234555555555555432
Q ss_pred HHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--C
Q 002460 375 NMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFEN--K 452 (919)
Q Consensus 375 ~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~--~ 452 (919)
..||...|.+.|+.=.+-..++.|+.++++ +
T Consensus 170 -----------------------------------------------w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 170 -----------------------------------------------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred -----------------------------------------------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 456777777777777777888888888887 4
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCC-h
Q 002460 453 DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG----CLLMLKQGKQMHAYAMKSGFELD-L 527 (919)
Q Consensus 453 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~ 527 (919)
..|++.+|--...-=-++|+..-|..+|....+. -.|...-..++.+++ ....++.|.-++..++..-.... .
T Consensus 203 ~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 203 VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 5678888888877778888888888888877653 223444444455554 45677888888888887632221 3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHh--------ccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh--
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIF--------NDIPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF-- 594 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f--------~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 594 (919)
..+......=-+.|+.....+.. +.+.. -|-.+|--.+..--..|+.+...++|++.+.. ++|-..
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 45555555555566644333322 22222 24557777777777889999999999999875 566332
Q ss_pred -----HHHHH---HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHH----HcCCHHHHHHHHHhCC--CCCee
Q 002460 595 -----TFAIL---VKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA----KCGNIEDAYILFKQMD--MRNTV 660 (919)
Q Consensus 595 -----t~~~l---l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~ 660 (919)
.|.-+ +-.=....+++.+.++++..++ -++...+++.-+=-+|+ ++-++..|.+++.... -|...
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K 438 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh
Confidence 11111 1111345788889999988888 45556667766655555 6788889999988776 35666
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
++...|..-.+.++++....++++.++- .| |..++......-...|+.|.|..+|+...+...+......|...|+-
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 7777888888889999999999999884 56 66788877777778899999999999887753444445567777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh
Q 002460 740 LGRAGRTKEAGELILSM-PFEASASMHRALLGACR-----VQG-----------DTETGKWVAEKLMA 790 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~ 790 (919)
=...|.++.|..+++++ ...+-..+|-++..--. ..+ ++..|..+++.+..
T Consensus 517 Ei~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 77889999999988886 33445557777665433 223 45667777776664
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.8e-08 Score=103.78 Aligned_cols=254 Identities=11% Similarity=0.055 Sum_probs=192.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCC--CCCchhhcHHHHHHHHcC
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDC--SSDPFVGISLVDMYAKCG 642 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g 642 (919)
..+|....+.+++++-.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-.-..+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555667778887777777777665555544445555667788899999988888632 125556655543322222
Q ss_pred CHHH-HHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 643 NIED-AYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 643 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
++.- |..++ .+.+-.+.|...+.+-|.-.++.++|...|++.++ +.|... .|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 22222 23334566778888888889999999999999988 566544 6777888899999999999999988
Q ss_pred HHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 721 REKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 721 ~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+ +.| |-..|--|.++|.-.+...-|+-.|++. ..+| |..+|.+|...|.+-++.++|+..+++++.....+..
T Consensus 391 vd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred Hh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 75 455 6778889999999999999999999987 5667 6789999999999999999999999999998877889
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+|+.|+++|...++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988876554
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2.7e-07 Score=101.36 Aligned_cols=471 Identities=12% Similarity=0.107 Sum_probs=298.7
Q ss_pred hhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhh---cCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccC
Q 002460 308 LQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAV---AGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVC 384 (919)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~ 384 (919)
-+.++.++++.-+..-...+..-|..++..+..++ ...++.++. ++-..+...+.|...++.+.+..
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL-------- 307 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH--------
Confidence 34566778888887777777777777777766654 355666666 44444444444433333222211
Q ss_pred CCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHH
Q 002460 385 GLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWN 461 (919)
Q Consensus 385 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~ 461 (919)
...+.++....+..|..+|..|.-++.++|+++.+.+.|++...- ....|+
T Consensus 308 --------------------------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~ 361 (799)
T KOG4162|consen 308 --------------------------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWY 361 (799)
T ss_pred --------------------------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Confidence 112223333445678999999999999999999999999985432 456799
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH-HHH-hccCchHHHHHHHHHHHHh--CC--CCChhHHHHHHH
Q 002460 462 AMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAV-KAC-GCLLMLKQGKQMHAYAMKS--GF--ELDLCVSSGILD 535 (919)
Q Consensus 462 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~-~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~ 535 (919)
.+-..|.-.|.-..|+.++++-....-.|+..+.-.+. ..| .+.+.+++|...-..++.. +. ......+..+.-
T Consensus 362 ~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi 441 (799)
T KOG4162|consen 362 QLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGI 441 (799)
T ss_pred HHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999998876654345444433333 333 3446777777766666652 21 122344444444
Q ss_pred HHHHcC-----------CHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHH
Q 002460 536 MYVKCG-----------AMVDAQSIFNDIP-----APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAIL 599 (919)
Q Consensus 536 ~y~~~g-----------~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 599 (919)
+|...- ...++.+.+++.. +|+++.|-++ -|+..++.+.|++..++..+.+-.-+...+..+
T Consensus 442 ~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 442 AYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 454321 1234455555442 3444444443 466778899999999999888767788888888
Q ss_pred HHHHcccccHHHHHHHHHHHHH-cCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC-----------------------
Q 002460 600 VKASSCLTALEQGRQIHANLIK-LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD----------------------- 655 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------------------- 655 (919)
.-.++..+++.+|+.+.+.... .|...... ..-++.-..-++.++|......+.
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 8888888999999998876644 23211100 011122222444444443322221
Q ss_pred --------CCCee-eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------HHHHHHHHHhccCCHHHHHHHHH
Q 002460 656 --------MRNTV-LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--------TFIGVLSACSYTGLVSEAYENFH 718 (919)
Q Consensus 656 --------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~ 718 (919)
..|.. ++..+ .+... -+...+..-.. |...-+.|+.. .+......+...+..++|...+.
T Consensus 598 ~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred ccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 00111 11111 11111 11111100000 22222233221 34455567888899999998887
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCC
Q 002460 719 LMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKW--VAEKLMALEP 793 (919)
Q Consensus 719 ~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p 793 (919)
+.. ++.| ....|......+...|+++||.+.|... ...|+. .+..++...+...|+...|.. ++..+++++|
T Consensus 675 Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 675 EAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 775 4445 4677888888899999999999988775 667754 577788888888898888888 9999999999
Q ss_pred CCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 794 FDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 794 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.++.+|..|+.++.+.|+.++|.+.|....+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999999999999976543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=1.5e-09 Score=120.28 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=192.3
Q ss_pred HhcCCHHHHHHHHhcCCCC--C-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccCchHHH
Q 002460 437 CRNGSMAEAEYLFENKDGF--D-LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI--TIATAVKACGCLLMLKQG 511 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 511 (919)
...|+++.|++.+.+..+. + ...+-....+..+.|++++|.+.+.+..+.. |+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 4679999999999876553 2 2234444567788899999999999987643 5543 333346677789999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCC---ChhhHHHH----HHHHHHcCChhHHHHHHHHH
Q 002460 512 KQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAP---DDVAWTTM----ISGCVDNGEEDLALSIYHQM 584 (919)
Q Consensus 512 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m 584 (919)
...++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+. +...+..+ ..++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 556778899999999999999999999887743 22222211 11112222222222233333
Q ss_pred HhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--CCeee-
Q 002460 585 RLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--RNTVL- 661 (919)
Q Consensus 585 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~- 661 (919)
.+.. |+ ..+.++..+..++..+...|+.++|.+++++..+ ||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 3221 10 0112455556677777777778887777777764 33221
Q ss_pred --ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 002460 662 --WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV---TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFL 736 (919)
Q Consensus 662 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 736 (919)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 122222233456778888999888874 67555 455778889999999999999995333 2567998888899
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 002460 737 VDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m 756 (919)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998863
No 50
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.6e-07 Score=101.35 Aligned_cols=187 Identities=18% Similarity=0.288 Sum_probs=136.4
Q ss_pred CHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 643 NIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+++.|.+++-.+++....+
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444444433333 3457999999999999999999887432 2566899999999999999999999887766
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 723 KYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 723 ~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
+ .-+|.++ +.||-+|++.+++.|-++++. -|+..-......-|...|.++-|+-.+. +...|..|
T Consensus 1162 k-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~L 1226 (1666)
T KOG0985|consen 1162 K-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKL 1226 (1666)
T ss_pred h-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHH
Confidence 5 6677665 468889999999999998884 5788888888999999999998888876 45567778
Q ss_pred HHHHhhcCCcchHHHHHHHHHhCCCCCCch------HH-------------HHHHHHHHHHHHHhCCcc
Q 002460 803 SNIFAAANQWDDVTSARGEMKRKNVKKDPA------DL-------------IFAKVEGLIKRIKEGGYV 852 (919)
Q Consensus 803 ~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~------~~-------------i~~~l~~l~~~~~~~g~~ 852 (919)
+..+...|.+..|...-++......-|..+ +| ..++|+++....+..||-
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcH
Confidence 888888888887776543332222222222 11 135677777777777764
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=3.2e-11 Score=126.85 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred cCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHH
Q 002460 505 LLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYH 582 (919)
Q Consensus 505 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (919)
.++.+.|.+.++.+...+. .++..+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.++++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444332 234445555555 56677777776665543 2455566677777777777777777777
Q ss_pred HHHhcC-CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCC
Q 002460 583 QMRLSG-VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRN 658 (919)
Q Consensus 583 ~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 658 (919)
+..... .+++...|......+.+.|+.++|...++.+++... .+..+.+.++..+...|+.+++.++++... ..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 765432 234555566666666777777777777777766542 245556667777777777777666665543 356
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
...|..+..+|...|+.++|+..|++..+. .| |..+...+..++...|+.++|.++......
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 677777777788888888888888877763 44 555667777777778888887777666543
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=6.4e-10 Score=113.75 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=160.1
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSAC 704 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 704 (919)
...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566688889999999999999987753 345678888889999999999999999998853 22455677788889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
...|++++|.+.++...+..........+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764222223566777888999999999999999886 3344 4567888888889999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 783 WVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 783 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
..++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888999999999999999998877654
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.9e-07 Score=96.32 Aligned_cols=397 Identities=13% Similarity=0.080 Sum_probs=295.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 002460 427 FVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACG 503 (919)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 503 (919)
..|-....-=...+++..|+.+|++... +++..|--.+..=.++.+...|..++++....=.+.|..-| ..+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHH
Confidence 3343333344455678889999988654 57778988999999999999999999998774333343333 2333445
Q ss_pred ccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 504 CLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+|++..|++++..-.. ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=-++|....|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67899999999987765 48999999999999999999999999999865 699999988888888899999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHH----cccccHHHHHHHHHHHHHcCCCCC-chhhcHHHHHHHHcCCHHHHHHHH-----
Q 002460 582 HQMRLSGVVPDEFTFAILVKAS----SCLTALEQGRQIHANLIKLDCSSD-PFVGISLVDMYAKCGNIEDAYILF----- 651 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~----- 651 (919)
...++. -.|...-..++.++ .+...++.|.-+++..++.-.... ...|..+...=-+-|+....+...
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 987763 12233333333333 456678889999998887643221 344554544444556654433332
Q ss_pred ---HhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHH---hccCCHHHHHH
Q 002460 652 ---KQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-------TFIGVLSAC---SYTGLVSEAYE 715 (919)
Q Consensus 652 ---~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~ 715 (919)
+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. +|.-+=.+| ....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222233 5567777888888889999999999999975 677321 222222222 35688999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 716 NFHLMREKYGIEP-EVEHYSFLVDAL----GRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 716 ~~~~m~~~~~~~p-~~~~y~~li~~~----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
+|+...+ +.| ...++.-+=-+| .|+.++..|.+++-.. +.-|...++...+..-.+.++++....++++.+
T Consensus 388 vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999876 445 455555444333 5899999999999876 788999999999999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
+..|+|..++...+.+-...|+++.|..+++...+....--|.
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999999999999999888776544454
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.2e-11 Score=90.79 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=48.0
Q ss_pred CCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcC
Q 002460 295 SNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG 344 (919)
Q Consensus 295 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 344 (919)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999975
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.2e-08 Score=102.07 Aligned_cols=273 Identities=13% Similarity=0.018 Sum_probs=191.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcC
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCG 642 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 642 (919)
.-..-+-..+++++..+++++..+. .++....+..=|.++...|+-.+-..+-..+.+. .+....+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344445556666666666665553 1233333333333444445444433333333332 2445566777777777889
Q ss_pred CHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHH
Q 002460 643 NIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 643 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
+..+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|...+..+-|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998776433 458999999999999999999999888773 222333444455568889999999999988
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 720 MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP--------FEA-SASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 720 m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
.. ++.|+ +..++-+.-+.-..+.+.+|...|+... ..+ -..+|+.|..+|++.+.+++|+..+++++
T Consensus 406 A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 406 AL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 74 67774 6666666666677888999998887751 112 34678899999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchH-HHHHHHHHHHHH
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPAD-LIFAKVEGLIKR 845 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~-~i~~~l~~l~~~ 845 (919)
.+.|+|+.+|..++-+|...|+.+.|++.+.+.. -..|.. -+-+.|....+.
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL----~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL----ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH----hcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997543 333443 344444444433
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.1e-11 Score=87.37 Aligned_cols=50 Identities=34% Similarity=0.677 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc
Q 002460 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC 605 (919)
Q Consensus 556 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 605 (919)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=1.5e-05 Score=85.95 Aligned_cols=433 Identities=15% Similarity=0.167 Sum_probs=246.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHhcCCC-----CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002460 195 FVSGALVNIYSKFGKIREAKFLFDGMQE-----RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGV 269 (919)
Q Consensus 195 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 269 (919)
.+|-.-+....+.|++...+..|++... .....|...|.-.-..|-++-++.++++..+ +.|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~---------- 170 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE---------- 170 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH----------
Confidence 4555666666777888888888876443 2334588778777778888888888888776 3332
Q ss_pred hhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChh
Q 002460 270 ISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLN 349 (919)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~ 349 (919)
.-+-.|..+++.+++++|.+.+........ - . ++.|
T Consensus 171 -----------------------------~~eeyie~L~~~d~~~eaa~~la~vln~d~-----f----~---sk~g--- 206 (835)
T KOG2047|consen 171 -----------------------------AREEYIEYLAKSDRLDEAAQRLATVLNQDE-----F----V---SKKG--- 206 (835)
T ss_pred -----------------------------HHHHHHHHHHhccchHHHHHHHHHhcCchh-----h----h---hhcc---
Confidence 123346667777777777777766642210 0 0 1111
Q ss_pred HHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcCCCCchhHH
Q 002460 350 LGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVS 429 (919)
Q Consensus 350 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~d~~~~ 429 (919)
.++-..|.-+-+..++.-+. . .--....+...++..-...=-..|
T Consensus 207 --------------kSn~qlw~elcdlis~~p~~-------~--------------~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 207 --------------KSNHQLWLELCDLISQNPDK-------V--------------QSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred --------------cchhhHHHHHHHHHHhCcch-------h--------------cccCHHHHHHhhcccCcHHHHHHH
Confidence 11111122222222111100 0 000011111111111111123568
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--CcchHHHHHHHHHh----------------CCC------hhHHHHHHHHHHH
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDGF--DLATWNAMIFGYIL----------------SNN------SHKALELFSHMHT 485 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~ 485 (919)
++|.+.|.+.|.++.|..+|++.... .+.-++.+.++|++ .|+ ++-.+.-|+.+..
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999874332 22223333333322 121 1223334444433
Q ss_pred CCC--------CCCH---hHHHHHHHHHhccCchHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002460 486 SGE--------RLDE---ITIATAVKACGCLLMLKQGKQMHAYAMKSG-----FELDLCVSSGILDMYVKCGAMVDAQSI 549 (919)
Q Consensus 486 ~g~--------~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~ 549 (919)
.+. +.|+ .++..-+. ...|+..+-...+..+++.- ...-...|..+...|-..|+++.|+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 220 1111 11211111 12345556666677766541 112234678889999999999999999
Q ss_pred hccCCCCC-------hhhHHHHHHHHHHcCChhHHHHHHHHHHhcC----------CCC-------CHhHHHHHHHHHcc
Q 002460 550 FNDIPAPD-------DVAWTTMISGCVDNGEEDLALSIYHQMRLSG----------VVP-------DEFTFAILVKASSC 605 (919)
Q Consensus 550 f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~t~~~ll~a~~~ 605 (919)
|++..+-+ ..+|-.....=.++.+++.|+++.+.....- -.| +...|...+..-..
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 99887522 2356666666677888999999888764321 111 11223334444455
Q ss_pred cccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC----CCCe-eeehHHHHHHHhc---CCHHH
Q 002460 606 LTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD----MRNT-VLWNAMLVGLAQH---GNGEE 677 (919)
Q Consensus 606 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~ 677 (919)
.|-++..+.+++.+++..+.....+.| ..-.+-...-++++.+++++-. -|++ ..||..+.-+.+. ...+.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677888888888888877643333333 3334455667899999999865 2443 3788877666542 35899
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHH--HhccCCHHHHHHHHHHhHH
Q 002460 678 TLKLFEDMKAHGVEPDSVTFIGVLSA--CSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 678 A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~ 722 (919)
|..+|++.++ |.+|...-+.-|+.+ =-.-|....|+.++++...
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999998 677766533333332 3345888888888887654
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=4.4e-08 Score=96.49 Aligned_cols=267 Identities=14% Similarity=0.094 Sum_probs=146.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHHcCCHHHH
Q 002460 470 SNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSG-FELD--LCVSSGILDMYVKCGAMVDA 546 (919)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~~~g~~~~A 546 (919)
+.++++|+++|-+|.+.. +-...+-.++-+.+.+.|.++.|..+|.-+.++- +..+ ..+...|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 478899999999998732 1122233456677888899999999998887642 2111 23445567778888999999
Q ss_pred HHHhccCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcC
Q 002460 547 QSIFNDIPAPDD---VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD 623 (919)
Q Consensus 547 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 623 (919)
+.+|..+.+... ....-|+..|.+..++++|+++-+++.+.|-.+..+-.. ..|
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---qfy-------------------- 183 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---QFY-------------------- 183 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH---HHH--------------------
Confidence 999988876333 355567888888889999998888888766555443211 111
Q ss_pred CCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 002460 624 CSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV 700 (919)
Q Consensus 624 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 700 (919)
.-|...+....+++.|..++.+....| +.+--.+...+...|+++.|.+.++...+.+..--+.+...|
T Consensus 184 --------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 184 --------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred --------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 113333333444444444444443221 222222333444555555555555555553211122244445
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI-LSMPFEASASMHRALLGA 771 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~~ 771 (919)
..+|.+.|+.+++..++..+.+. .+....-..|.+......-.++|...+ +.+.-+|+...+..|+..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 55555555555555555554432 233333333333333333333343332 223445555555555544
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.9e-07 Score=92.61 Aligned_cols=402 Identities=12% Similarity=0.023 Sum_probs=228.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHH-HHHhCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 002460 425 DSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIF-GYILSN-NSHKALELFSHMHTSGERLDEITIATAVKAC 502 (919)
Q Consensus 425 d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 502 (919)
|...-...+..|-..++-+.|.....+.+..-...-+.|+- -+.+.| +-.++.--+.+....-+ ..+. .|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL~-~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MALQ-VIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHHH-HHHHH
Confidence 44555567778888888899999998888764444444443 333333 22122222222211100 0000 00000
Q ss_pred hccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHc--CCHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChh
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKC--GAMVDAQSIFNDIP-----APDDVAWTTMISGCVDNGEED 575 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~ 575 (919)
.+.+ +..+..--..|-....++.......-+.+|+.+ ++-..|...|-... .-|+....++...+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 000000000111112233333333334444333 33333333322221 246667777788888888888
Q ss_pred HHHHHHHHHHhcCCCCCHhH----HHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHH
Q 002460 576 LALSIYHQMRLSGVVPDEFT----FAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILF 651 (919)
Q Consensus 576 ~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 651 (919)
+|+..|++.+. +.|+.++ |..+ +.+.|+.+.-..+...+....- .+...+-.-........+++.|+.+-
T Consensus 250 ~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 250 QAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred HHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 88888887665 3444432 3333 3456667666666655544321 11111111122233456777888777
Q ss_pred HhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 002460 652 KQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE 727 (919)
Q Consensus 652 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 727 (919)
++...-| +..+-.-...+.+.|+.++|.-.|+..+. +.| +-..|..|+.+|...|.+.||.-.-+.... -+.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 7666443 34444444677888899999999988877 566 556899999999999999988877666554 233
Q ss_pred CChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 002460 728 PEVEHYSFLV-DALG-RAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803 (919)
Q Consensus 728 p~~~~y~~li-~~~~-r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 803 (919)
.+..+...+. ..+. ..---++|..++++. ..+|+. .....+...|...|..+.+...+++.+...| |...++.|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 4455555442 3332 223347788888875 677765 3556666778888889999999999998888 567888899
Q ss_pred HHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHHHHHHHHHHH
Q 002460 804 NIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEGLIKRIK 847 (919)
Q Consensus 804 ~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~l~~l~~~~~ 847 (919)
.+......+++|.+.|..... .+|. +...+-|+++.+.++
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr----~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR----QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh----cCccchHHHHHHHHHHhccC
Confidence 999999999999988865543 3444 334445555555544
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=6.1e-09 Score=113.87 Aligned_cols=230 Identities=15% Similarity=0.122 Sum_probs=167.5
Q ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHc-----CC-CCCch-hhcHHHHHHHHcCCHHHHHHHHHhCCC-------C--
Q 002460 594 FTFAILVKASSCLTALEQGRQIHANLIKL-----DC-SSDPF-VGISLVDMYAKCGNIEDAYILFKQMDM-------R-- 657 (919)
Q Consensus 594 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 657 (919)
.|...+...|...|+++.|..+++..++. |. .|.+. +.+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777788888888888877766553 21 12222 233467788889999998888887751 1
Q ss_pred --CeeeehHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCC-Chh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 002460 658 --NTVLWNAMLVGLAQHGNGEETLKLFEDMKA-----HGVEP-DSV-TFIGVLSACSYTGLVSEAYENFHLMREKYG--I 726 (919)
Q Consensus 658 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 726 (919)
-..+++.|..+|.+.|++++|..++++..+ .|..+ +.. -++.+...|+..+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677788889999999888888777654 22222 222 466777789999999999999988776544 2
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 002460 727 EPE----VEHYSFLVDALGRAGRTKEAGELILSM-------PF--EAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL- 791 (919)
Q Consensus 727 ~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 791 (919)
.++ ..+|+.|..+|...|+++||++++++. .. .+. ....+.|..+|...++.+.|...++....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 468999999999999999999999876 11 222 346778888898888989898888877654
Q ss_pred ---CCCCC---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 792 ---EPFDS---SAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 792 ---~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.|+.| .+|..|+.+|.+.|++++|.++-+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44443 468899999999999999998876543
No 61
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=9.3e-06 Score=91.34 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 541 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4455555554444433 46888888888888888888777442 355678888888888888888888887777
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
+..-+|.+. +.||-+|++.+++.+-++++. .||......+..-|...|.++.|.-+
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 776665544 357777777777666554431 23333333344444444444444333
No 62
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=5.7e-06 Score=89.71 Aligned_cols=309 Identities=13% Similarity=0.109 Sum_probs=190.3
Q ss_pred HHHHHcCCHHHHHHHhccCCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHH
Q 002460 535 DMYVKCGAMVDAQSIFNDIPAPDDV--AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQG 612 (919)
Q Consensus 535 ~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 612 (919)
.+-.....+.+|..+++.+...++. -|..+...|+..|+++.|.++|.+. + .+.-.|..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHH
Confidence 3344556677777777777655443 3566667777778888887777652 1 234456667777777777
Q ss_pred HHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 002460 613 RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP 692 (919)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 692 (919)
.++-.+. .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..+..+++.++- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 6654332 34445556666666677788888888888888777764 477888889888888877653 45
Q ss_pred Ch--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHHH
Q 002460 693 DS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFE----ASASMHR 766 (919)
Q Consensus 693 ~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~----p~~~~~~ 766 (919)
|. .|...+..-+...|++..|...|-+..+ |..-+++|-.++.+++|..+-+.-+-. .-...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 53 3666777778889999999988766543 667788899999999999888764211 1123343
Q ss_pred HH------HHHHHhcCCHHHHHHHH------HHHHh-----hCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC-CC
Q 002460 767 AL------LGACRVQGDTETGKWVA------EKLMA-----LEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN-VK 828 (919)
Q Consensus 767 ~l------l~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~-~~ 828 (919)
-- .....+||-++.|...+ +-+++ ....-+..+..++-.+...|++++|.+.+-+..+.+ ..
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 22 22344566666555432 12222 123346678888889999999999987664433221 11
Q ss_pred CCchHHHHHHHHHHHHHHHhCCcccCCCc--ccccCCHHHHHHhHhhhhHH
Q 002460 829 KDPADLIFAKVEGLIKRIKEGGYVPDTDF--VLLDVEEEEKERALYYHSEK 877 (919)
Q Consensus 829 ~~~~~~i~~~l~~l~~~~~~~g~~p~~~~--~~~~~~~~~k~~~~~~hse~ 877 (919)
..=.. +.-.+...+....|-.|.... ..||-+=+.-+++---|-|-
T Consensus 1029 itwcq---avpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~ 1076 (1636)
T KOG3616|consen 1029 ITWCQ---AVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCED 1076 (1636)
T ss_pred chhhh---cccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChh
Confidence 10000 000112223335676776544 34665544445554445443
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=1.8e-05 Score=85.41 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 002460 427 FVSTALIDVYCRNGSMAEAEYLFENKDGFDLA-------TWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAV 499 (919)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 499 (919)
..|..+.+.|-..|+++.|+.+|++..+.+-. +|-.-...=.+..+++.|+.+.+.... .|.... +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~ 460 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L 460 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h
Confidence 45677788888888888888888876554322 344444444555666777776655543 222211 1
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHH---HHHHcCChhH
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMIS---GCVDNGEEDL 576 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~ 576 (919)
.. ...+..-++ . +..+..+|...++.--..|-++....+++.+.+--+.|=..+++ -+-.+.-+++
T Consensus 461 ~~-yd~~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 461 EY-YDNSEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hh-hcCCCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 11 111111111 0 11234556666666667777777788887776532222222221 1234555677
Q ss_pred HHHHHHHHHhcCCCCCHh-HHHHHHHHH---cccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHH
Q 002460 577 ALSIYHQMRLSGVVPDEF-TFAILVKAS---SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFK 652 (919)
Q Consensus 577 A~~~~~~m~~~g~~p~~~-t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 652 (919)
+.++|++-+..=-.|+.. .|++-|.-+ -....++.|+.+|++.++ |++|.-. ..+--.|++.
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~l----------- 595 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKL----------- 595 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHH-----------
Confidence 777776644432234443 233222222 223356777777777776 5443322 1122233321
Q ss_pred hCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 002460 653 QMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE- 729 (919)
Q Consensus 653 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 729 (919)
--.+|-...|++++++.... +++... .|+..|.--...=-+.....+|++.++. -|+
T Consensus 596 ----------------EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~ 655 (835)
T KOG2047|consen 596 ----------------EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDS 655 (835)
T ss_pred ----------------HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChH
Confidence 11345555666666664432 444322 4555544222111122334445555442 233
Q ss_pred --hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 002460 730 --VEHYSFLVDALGRAGRTKEAGELILSMP--FEA--SASMHRALLGACRVQGDTETGKWV 784 (919)
Q Consensus 730 --~~~y~~li~~~~r~g~~~eA~~~~~~m~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~ 784 (919)
.+..--..++=.+-|..+.|..++.-.. ..| +...|.+.-.--.+|||-+.-++.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 2222334455566788888888776541 233 566788877777888884443333
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.5e-07 Score=97.71 Aligned_cols=351 Identities=14% Similarity=0.072 Sum_probs=218.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 002460 460 WNAMIFGYILSNNSHKALELFSHMHTSGERLD-EITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD-LCVSSGILDMY 537 (919)
Q Consensus 460 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y 537 (919)
+-....-|.++|.+++|++.|.+..+ ..|| +..|...-.+|...|+++++.+.-...++.+ |+ +..+.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34455678899999999999999988 5788 6777777778889999999988877776543 33 33455555677
Q ss_pred HHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChh--------HHHHHHHHHHh-c--CCCCCHhHHHHHHHHHccc
Q 002460 538 VKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEED--------LALSIYHQMRL-S--GVVPDEFTFAILVKASSCL 606 (919)
Q Consensus 538 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~-~--g~~p~~~t~~~ll~a~~~~ 606 (919)
-..|++++|+. .+|-.++..+|..+.-.- .|....++-.+ . .+-|+.....+.+..+...
T Consensus 194 E~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 77888887753 122223333332222211 22222222222 1 2345555444444433210
Q ss_pred -----------c--cHHHHHHHH------------HHHHHc----CCCCC-----------chhhcHHHHHHHHcCCHHH
Q 002460 607 -----------T--ALEQGRQIH------------ANLIKL----DCSSD-----------PFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 607 -----------~--~~~~a~~~~------------~~~~~~----~~~~~-----------~~~~~~li~~y~~~g~~~~ 646 (919)
+ .+.++.+.+ +.+.+. -..++ ..........+.-+|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0 111111111 111110 00111 1111111223445788888
Q ss_pred HHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 647 AYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 647 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
|..-|+.... | +...|--+...|....+.++-...|.+... +.| |+.+|..=.....-.+++++|..=|++.+
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai- 421 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI- 421 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 8888887653 2 233366677788888888888888888877 555 55677666666666778888888888876
Q ss_pred hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 002460 723 KYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF----- 794 (919)
Q Consensus 723 ~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----- 794 (919)
.+.|. +..|--+.-++-|.+++++++..|++. .++.-+.+++-.......+++++.|.+.++++++++|.
T Consensus 422 --~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 422 --SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred --hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 45664 667777777778888999999888876 34334567777777888888999999999999999988
Q ss_pred -CCchHHHHHHHHh-hcCCcchHHHHHHHHHhCCCCCCch
Q 002460 795 -DSSAYVLLSNIFA-AANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 795 -~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
++.+++.-+-+.. -.+++..|.++.+ +.++.+|.
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~----KA~e~Dpk 535 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLR----KAIELDPK 535 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHH----HHHccCch
Confidence 6666665443322 2366666766664 44455665
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=2.8e-08 Score=101.10 Aligned_cols=266 Identities=15% Similarity=0.130 Sum_probs=198.1
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHH
Q 002460 570 DNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYI 649 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 649 (919)
..|++.+|+++..+-.+.+-.| ...|..-..+--+.|+.+.+..+..++.+..-.++..++-+........|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3578888888888866665443 234555566777788888888888888877666777777778888888888888877
Q ss_pred HHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHhccCCHHHHHHHHHH
Q 002460 650 LFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-------VTFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 650 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
-.++.. ..++........+|.+.|++.....+..+|.+.|+--|+ .++..++.-+.+.+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 766554 567778888889999999999999999999988866553 3688888888877777777777777
Q ss_pred hHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 720 MREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 720 m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
... ..+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. . ..+-.|.+-++.+.=+..+++.+...|++|..
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 766 35556667777888888999999999888775 3233333 2 22334667788888888888888889999988
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Q 002460 799 YVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIK 844 (919)
Q Consensus 799 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~ 844 (919)
+..|+..|.+.+.|.+|.+.++...+ ..|+.+-+..+.....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~ 372 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHH
Confidence 99999999999999999988874443 3344445555555443
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=1.2e-07 Score=96.48 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=88.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002460 470 SNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSI 549 (919)
Q Consensus 470 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 549 (919)
.|++.+|..+..+-.+.+-.| ...|.....+.-..|+.+.+.+...++.+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477778887777766655333 2345555566667778888888777777664456666777777778888888888776
Q ss_pred hccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCH
Q 002460 550 FNDIP---APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDE 593 (919)
Q Consensus 550 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 593 (919)
.++.. ..+.........+|.+.|++.+...++.+|.+.|.--|.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 66543 457777788888888888888888888888888765444
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.5e-08 Score=116.82 Aligned_cols=242 Identities=16% Similarity=0.084 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHc---------ccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCC
Q 002460 574 EDLALSIYHQMRLSGVVPDEF-TFAILVKASS---------CLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGN 643 (919)
Q Consensus 574 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 643 (919)
.++|+++|++.++. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46777777777653 44433 3333222221 2344677777777777654 2345566667777888888
Q ss_pred HHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHH
Q 002460 644 IEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 644 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
+++|...|++... | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888887653 3 355677788888888888888888888887 456543 333344455667888888888887
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 720 MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRALLGACRVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 720 m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
.... ..|+ ...+..+..+|...|++++|...++++ +..|+.. .++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 2343 555677778888888888888888776 4455443 3444444555555 477777777766444334
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3444477788888887777666 555443
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.5e-06 Score=86.54 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=187.2
Q ss_pred CHHHHHHHHhcCCC--CCcchHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC--chHHHHHHH
Q 002460 441 SMAEAEYLFENKDG--FDLATWNAMI-FGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLL--MLKQGKQMH 515 (919)
Q Consensus 441 ~~~~A~~~f~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~ 515 (919)
.+++|..++.+... |.....|.-+ -+|.+...++-+.++++-..+. -||+ |+..-+.+|..-. .-..+.+-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 46788888877654 3344555433 4677777778777777776653 3443 4444444543221 111122222
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHc-----CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 002460 516 AYAMKSGFELDLCVSSGILDMYVKC-----GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVV 590 (919)
Q Consensus 516 ~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 590 (919)
..+.+.+-..- ..+.-.++. ..-+.|.+++-.+.+.=+..--.|+--|.++++.++|..+.+++.- ..
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 22222211110 011122222 1224444444333221111222344446777777777777665421 22
Q ss_pred CCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeehHH
Q 002460 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-----RNTVLWNAM 665 (919)
Q Consensus 591 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 665 (919)
|-......+..+ ++..-......+.-|.+.|+-+.. ..+.--.+|
T Consensus 316 P~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 222222222111 111111111223344444443331 123344566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.+.+.-..++++.+..++....- +.-|.+.-..+..|.+..|.+.+|.++|-.+... .++.+..-...|...|.+.|+
T Consensus 366 As~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCC
Confidence 66777777788888888777664 3333333345778888889999999988776432 233333333456778889999
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 746 TKEAGELILSMPFEASASMH-RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+-|.+++-++....+..+. ....+-|.+.+.+=-|-.++..+-.++| +|..|. |+...-..++..+-.
T Consensus 444 P~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~ 513 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLAN 513 (557)
T ss_pred chHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHc
Confidence 99999999888644444443 4444569999998888888988888888 455543 555556677777766
Q ss_pred CCCCCCchHHHHH
Q 002460 825 KNVKKDPADLIFA 837 (919)
Q Consensus 825 ~~~~~~~~~~i~~ 837 (919)
....+.|+..+.+
T Consensus 514 ~~~~~~p~~~~rE 526 (557)
T KOG3785|consen 514 HKTDPIPISQMRE 526 (557)
T ss_pred CCCCCCchhHHHH
Confidence 6666667644433
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3.1e-08 Score=104.39 Aligned_cols=211 Identities=14% Similarity=0.081 Sum_probs=151.0
Q ss_pred ccHHHHHHHHHHHHHcC-CCCC--chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHH
Q 002460 607 TALEQGRQIHANLIKLD-CSSD--PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLK 680 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 680 (919)
+..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++... .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666665665432 2222 34566788889999999999999998763 457789999999999999999999
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 002460 681 LFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--P 757 (919)
Q Consensus 681 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~ 757 (919)
.|++.++ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 57854 57888888899999999999999998763 454332222223345678999999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 758 FEASASMHRALLGACRVQGDTETGKWVAEKLM-------ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 758 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..|+. |.. .......|+...+. .++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~--~~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WGW-NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cHH-HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332 321 12223345544332 333333 5667777899999999999999999999998877654
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-06 Score=93.25 Aligned_cols=285 Identities=11% Similarity=0.024 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 002460 457 LATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDM 536 (919)
Q Consensus 457 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 536 (919)
+..--.-.+-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+..+.+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444556667788888888888887653 444444555555666666666655555555554 35567778888888
Q ss_pred HHHcCCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 537 YVKCGAMVDAQSIFNDIPAPD---DVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 537 y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+---|.+.+.++.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998765433 347888888888889999998888765442 1101111122223355566666666
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
+++..+.... +.|+.+.+-+.-+....+.+.+|..+|+....+ .+....+ ..--
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w 454 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFW 454 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccch
Confidence 6665555433 344555555555555555555555555544310 0000000 0001
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 002460 694 SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGAC 772 (919)
Q Consensus 694 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~ 772 (919)
..+++.|..+|.+.++.++|+..|+.... -.+-+..+|..+.-.|...|+++.|.+.|.+. .++|+..+-..+|+.+
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 23444555555555555555555555443 12224455555555555555555555555443 4455544444444433
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.99 E-value=7.1e-08 Score=98.54 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHH
Q 002460 558 DVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDM 637 (919)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 637 (919)
...+..+...|...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 4466777777888888888888888776542 1223344444444444455555555444444332
Q ss_pred HHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 716 (919)
..+...+..+...+...|++++|++.|++..+....| +...+..+..++...|++++|...
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1223344455555566666666666666665532222 223445555566667777777777
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 717 FHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF-EASASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
++..... .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|....+.+.+..|
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7666542 1223456666677777777777777776664 22 22445555566666667777777777666655443
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=5.5e-06 Score=91.40 Aligned_cols=306 Identities=13% Similarity=0.035 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc
Q 002460 474 HKALELFSHMHTSG-ERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND 552 (919)
Q Consensus 474 ~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 552 (919)
.++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+.++.+-..+...|..|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 56777777776643 345555554443 345567888888888888876677778888888888888888888887765
Q ss_pred CCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHH--cCCC
Q 002460 553 IPA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRLS--GVVPDEFTFAILVKASSCLTALEQGRQIHANLIK--LDCS 625 (919)
Q Consensus 553 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~ 625 (919)
..+ .|-+....-|..-..-++.++|+.....+..- ...|-..+.. .| ...+....+.- ....
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g---~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EG---KLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hh---hhhhhhcccccCccccc
Confidence 432 11111111122223356667776666655431 0000000000 00 00111111100 0011
Q ss_pred CCchhhcHHHHHHHH---cCCHHHHHHHHHhCCCCC------eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hh
Q 002460 626 SDPFVGISLVDMYAK---CGNIEDAYILFKQMDMRN------TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SV 695 (919)
Q Consensus 626 ~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 695 (919)
..+.++.-+...... .-..+.....+...+.|+ ...|......+.+.++.++|...+.+... +.|- ..
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~ 685 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSAS 685 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHH
Confidence 111222212111111 111111111111112222 12466667788889999999988888776 4553 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGE--LILSM-PFEA-SASMHRALLG 770 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~--~~~~m-~~~p-~~~~~~~ll~ 770 (919)
.|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..|..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 56666667788899999999998775 57786 7889999999999997777766 77776 6666 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
...+.|+.+.|-..+.-++++++.+|.
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999988774
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=4.8e-07 Score=89.37 Aligned_cols=303 Identities=13% Similarity=0.120 Sum_probs=187.2
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-CChh------hHHHHHHHHHHcCChhHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-PDDV------AWTTMISGCVDNGEEDLAL 578 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~------~~~~li~~~~~~g~~~~A~ 578 (919)
.+.++|...|-.|.+.. +....+--+|.+.|-+.|..|.|+++-+.+.+ ||.. ..-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665522 22333445566666666666666666665543 3221 2223444555666666666
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002460 579 SIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658 (919)
Q Consensus 579 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 658 (919)
++|..+.+.|. --...... |+..|-+..+|++|+++-++..+-+
T Consensus 128 ~~f~~L~de~e-fa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcchh-hhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 66666655331 11122333 4555555555555555555443322
Q ss_pred ee--------eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002460 659 TV--------LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE 729 (919)
Q Consensus 659 ~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 729 (919)
.. .|.-+...+....+.+.|..++++..+. .|+.+ .-..+.......|+++.|.+.++...+. +..--
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl 248 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYL 248 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHH
Confidence 22 2333455556678899999999999985 56555 3445566788999999999999999875 33334
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh-
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA- 807 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~- 807 (919)
.++...|..+|...|+.++...++.++ ...+....-..+...-..+.-.+.|...+.+-+.-.|.--+.|.++.--..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 778888999999999999999999886 455555555555554444455667777777777888865555554443333
Q ss_pred -hcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhCCcccCCCccc
Q 002460 808 -AANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYVPDTDFVL 859 (919)
Q Consensus 808 -~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~ 859 (919)
..|++.+-....+.|....++..|. -...+-||...+-+|.
T Consensus 329 aeeg~~k~sL~~lr~mvge~l~~~~~-----------YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQLRRKPR-----------YRCQNCGFTAHTLYWH 370 (389)
T ss_pred ccccchhhhHHHHHHHHHHHHhhcCC-----------ceecccCCcceeeeee
Confidence 4567888888888888766665552 2334556655554443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.2e-08 Score=96.39 Aligned_cols=229 Identities=16% Similarity=0.104 Sum_probs=156.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHc
Q 002460 562 TTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKC 641 (919)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 641 (919)
+-|..+|.+.|.+.+|.+.|+.-++. .|-..||..+-.+|.+....+.|..++..-.+. ++-++....-+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555666666666666666665553 344445555555555555555555555444432 122333333455666677
Q ss_pred CCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHH
Q 002460 642 GNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFH 718 (919)
Q Consensus 642 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 718 (919)
++.++|.++++...+ .++.+..++..+|.-.++++-|+.+|+++++.|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 778888888887663 36667777777888888888888888888888754 45667777777777777777766666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 719 LMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 719 ~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+.... +-+.++ -+.+|..|.......||+..|.+.++-++..+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 55432 111111 23467777777777899999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 799 YVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 799 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
++.|+-+-.+.|+.++|..+++..+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999876653
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=5.2e-08 Score=112.38 Aligned_cols=210 Identities=11% Similarity=-0.009 Sum_probs=157.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHH---------cCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCC
Q 002460 607 TALEQGRQIHANLIKLDCSSDPFVGISLVDMYAK---------CGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGN 674 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 674 (919)
+.+++|.+.++..++.... +...+..+..+|.. .+++++|...+++... .+..+|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3457888888888776422 33455555555442 2458899999998763 356788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALGRAGRTKEAGEL 752 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~r~g~~~eA~~~ 752 (919)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++...+ +.|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 46764 4677788889999999999999999875 45652 2333445556678999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 753 ILSMP--FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 753 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+++.- ..|+ +..+..+..++...|+.++|+..++++....|.+......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4446666667778899999999999998888888888888888888888 477776666654
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=6.1e-08 Score=91.36 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=135.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDAL 740 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~ 740 (919)
-.|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|...|..+.|.+.|+.... +.|+ -.+.|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3466778889999999999999988 46754 4888888899999999999999988864 5664 67788888889
Q ss_pred hhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 741 GRAGRTKEAGELILSMPFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
|.+|++++|...|++.-..|. +.+|..+.....+.|+.+.|+..+++.++++|+++.+...+++.....|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999988743443 3577777777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 002460 817 SARGEMKRKNV 827 (919)
Q Consensus 817 ~~~~~m~~~~~ 827 (919)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988877765
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=4.1e-07 Score=99.79 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCC----------CChh-hHHHHHHHHHHcCChhHHHHHHHHHHhc-----CC-C
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPA----------PDDV-AWTTMISGCVDNGEEDLALSIYHQMRLS-----GV-V 590 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 590 (919)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666654321 2222 2334566777888888888888887642 21 1
Q ss_pred CC-HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhC---CCCCe-eeehHH
Q 002460 591 PD-EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM---DMRNT-VLWNAM 665 (919)
Q Consensus 591 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~-~~~~~l 665 (919)
|. ..++..|-.+|.+.|++++|...++.+.+. ++.. ..+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 21 235566666788888888888877665431 1110 00111 112334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAH---GVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKY-----GIEPE-VEH 732 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 732 (919)
+..|...+++++|..++++..+. -+.++. -++..|...|.+.|++++|.++|+++.... +..+. -.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 44455555555555555544331 122333 267888888888888888888888876642 11222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM--------PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
++.|...|.+.++..+|.++|.+. +..|+. .++..|...|...|+++.|+++.+++..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 777888888888888888777664 344544 5788899999999999999999888874
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=0.00014 Score=82.55 Aligned_cols=357 Identities=14% Similarity=0.035 Sum_probs=203.0
Q ss_pred HHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHH
Q 002460 443 AEAEYLFENK---DGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAM 519 (919)
Q Consensus 443 ~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 519 (919)
..|...+... ...+...||.|--. ...|.+.-|...|-+-.... +-...+|..+-..|....+++.|.+.+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 3556666543 34577788887554 55567777777776655432 3345567776667778888888888888766
Q ss_pred HhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccC-----CC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHh-----
Q 002460 520 KSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDI-----PA---PDDVAWTTMISGCVDNGEEDLALSIYHQMRL----- 586 (919)
Q Consensus 520 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 586 (919)
... +.|...|-.....-...|+.-++..+|..- .+ ++..-|-.-..-...+|+.++-+..-+++-.
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543 333344433333344567777777777642 11 4444554444455677777665554444322
Q ss_pred ----cCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhc----HHHHHHHHcCCHHHHHHHHHhCCC-
Q 002460 587 ----SGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGI----SLVDMYAKCGNIEDAYILFKQMDM- 656 (919)
Q Consensus 587 ----~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~- 656 (919)
.|.+.+...|........+.+..+.+.+...+++.. ...-+...|+ -+...++..|.++.|..-+.....
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 234556667777777777777777776665554321 1122333333 344566677888877776665542
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS 734 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 734 (919)
.+..+-..-+.. .-.|+++++++.|++...-- -..|.+ ....++-+...++.-+.|...+-+... --+|+....-
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~--ls~~~~~sll 1113 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS--LSKVQASSLL 1113 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH--hCccchhhHH
Confidence 122221222222 44678999999999988721 112222 334444455566777777776655544 2345555554
Q ss_pred HHHHHHhhcCC---HHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 735 FLVDALGRAGR---TKEAGELILSMP----FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 735 ~li~~~~r~g~---~~eA~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
+|.-++.-..+ ..-+++-+.+.+ +.-++.....+ .+..+|+-.......++..-.+|.|+..|.+|.+=|+
T Consensus 1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44443332221 122222222221 11112222222 2567788888999999999999999999999985444
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.2e-05 Score=86.18 Aligned_cols=364 Identities=15% Similarity=0.101 Sum_probs=212.5
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCchHHHHHHH
Q 002460 437 CRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACGCLLMLKQGKQMH 515 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 515 (919)
.+.++.|+|...++.....|..+...-.+.+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~---- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV---- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----
Confidence 356788999998885555555455555677888999999999999997765432221 122222221111 00
Q ss_pred HHHHHhCCCCC--hhHHHHHHHHHHHcCCHHHHHHHhccC--------CCCCh-----h-----hHHHHHHHHHHcCChh
Q 002460 516 AYAMKSGFELD--LCVSSGILDMYVKCGAMVDAQSIFNDI--------PAPDD-----V-----AWTTMISGCVDNGEED 575 (919)
Q Consensus 516 ~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~-----~-----~~~~li~~~~~~g~~~ 575 (919)
..+......|+ -..+-.....+...|++.+|+++++.. .+.|. . .---|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 01111112221 112222445567889999999988766 21111 1 1122445667889999
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHH---HHcccccHHH--HHHH------------HHHHHHcCCCCCchhhcHHHHHH
Q 002460 576 LALSIYHQMRLSGVVPDEFTFAILVK---ASSCLTALEQ--GRQI------------HANLIKLDCSSDPFVGISLVDMY 638 (919)
Q Consensus 576 ~A~~~~~~m~~~g~~p~~~t~~~ll~---a~~~~~~~~~--a~~~------------~~~~~~~~~~~~~~~~~~li~~y 638 (919)
+|.+++...++.. .+|........+ +...-.++-. .... ...+.. .-.....--++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999998874 445433222221 2222111111 1111 111111 0011122224455555
Q ss_pred HHcCCHHHHHHHHHhCCCCC-eeeehHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHH
Q 002460 639 AKCGNIEDAYILFKQMDMRN-TVLWNAMLVGLA--QHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 713 (919)
. +..+.+.++-...+... ...+.+++.... +.....+|.+++...-+. .|+. +.....+..-...|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 4 45566777776666433 334444444332 223577888888877664 5544 3455556667889999999
Q ss_pred HHHHH--------HhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 002460 714 YENFH--------LMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--------PFEAS-ASMHRALLGACRVQG 776 (919)
Q Consensus 714 ~~~~~--------~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 776 (919)
.+++. .+.+. +.. +.+...++.++.+.+..+-|.+++.+. +..+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 44332 333 445666888888888776666666554 22222 234555555567789
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHH
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSA 818 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 818 (919)
+-++|...++++.+.+|+|....+.|.-+|+... .+.|..+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 9999999999999999999999999998888653 3445444
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=6.5e-07 Score=94.36 Aligned_cols=216 Identities=13% Similarity=0.005 Sum_probs=146.3
Q ss_pred CChhHHHHHHHHHHhcC-CCCC--HhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHH
Q 002460 572 GEEDLALSIYHQMRLSG-VVPD--EFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAY 648 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 648 (919)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666666432 1222 2335555556667777777777777776654 235667888889999999999999
Q ss_pred HHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002460 649 ILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYG 725 (919)
Q Consensus 649 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 725 (919)
..|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998863 3 466788888999999999999999999998 467654322223334567889999999977654 3
Q ss_pred CCCChhHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 726 IEPEVEHYSFLVDALGRAGRT--KEAGELILSM-PF----EA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 726 ~~p~~~~y~~li~~~~r~g~~--~eA~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
..|+...+ .++..+ .|++ +++.+.+.+. .. .| ....|..+...+...|+.++|+..++++++++|.|
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 34443322 333333 3444 3333333321 21 12 23578889999999999999999999999999744
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=2.6e-05 Score=84.78 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=91.7
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
+......+.+|..+.+.+...... ..-|.-+.+.|+..|+++.|+++|-+.. .++--|..|.+.|++++|.++
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 333444555555555544443211 1223345556666666666666655432 334455556666666666555
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 002460 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEAS 761 (919)
Q Consensus 682 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~ 761 (919)
-.+.. |.+.....|..-..-.-..|++.+|.++|-.+. .|+. -|.+|-+.|..++.+.++.+-.-.--
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh
Confidence 54432 111122234433444555566666655543321 1322 24455566666666666555421112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
..+...+..-+-..|++..|+..+-++- -+..-.|+|-.++.|++|-++-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2344444445555566655555543322 2334455666666666655543
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.5e-06 Score=83.53 Aligned_cols=255 Identities=17% Similarity=0.082 Sum_probs=187.4
Q ss_pred HHHHHHH--HHcCChhHHHHHHHHHHhcC-CCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchh-hcHHHHH
Q 002460 562 TTMISGC--VDNGEEDLALSIYHQMRLSG-VVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFV-GISLVDM 637 (919)
Q Consensus 562 ~~li~~~--~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 637 (919)
...|.++ +-.++...|..++-...... ++-|...+..+...+...|+.+++...|+...-.+ |+... .-...-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence 3445554 44566667776666555443 45566678888899999999999999998876643 22211 1112334
Q ss_pred HHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 713 (919)
+.+.|++++-..+...+... ...-|-.-.......++++.|+.+-++-++ +.|+.+ .|..-..++...|++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHH
Confidence 56788999888887776633 344566666667788999999999999987 466544 666666778899999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALL-GACRVQ-GDTETGKWVAEKL 788 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll-~~~~~~-g~~~~a~~~~~~~ 788 (919)
.-.|+... .+.| +...|.-|+..|...|++.||.-+-+.. . +..++.+...+. ..|.-. .--|+|+..+++.
T Consensus 354 ~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999886 4666 5899999999999999999998776543 2 223444443332 234332 3458899999999
Q ss_pred HhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 789 MALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 789 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
+.++|.-.++.+.++.++...|+.++++.+++.-.
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 99999999999999999999999999999886543
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-07 Score=90.85 Aligned_cols=226 Identities=14% Similarity=0.079 Sum_probs=187.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHH-HHHHH
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFA-ILVKA 602 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 602 (919)
|-.--+-+..+|.+.|.+.+|++.|+.-. .|-+.||-.|-..|.+-.+++.|+.+|.+-++. .|..+||. -..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33444678899999999999999998765 367778888999999999999999999987764 67777765 45567
Q ss_pred HcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHH
Q 002460 603 SSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETL 679 (919)
Q Consensus 603 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 679 (919)
+...+..+++.++++...+.. +.++....++...|.-.+++|-|.+.+.++. ..+...|+.+.-+|.-.+++|-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 778899999999999988864 3456666778888888999999999999876 467888999999999999999999
Q ss_pred HHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 680 KLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
..|++.+..--.|+.. .|..+.......|++.-|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999998876567654 677788788889999999999998865 23334788999998889999999999999876
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=6.5e-05 Score=75.24 Aligned_cols=403 Identities=13% Similarity=0.090 Sum_probs=246.1
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG---FDLATWNAMIFGYILSNNSHKALELFS 481 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 481 (919)
++...+..+++.....+-+....+---+...+.+.|++++|...+..+.+ ++...|-.|.-++.-.|.+.+|..+-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34555555555544333322223333355677889999999999876443 344567777777777788888877765
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChh
Q 002460 482 HMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDV 559 (919)
Q Consensus 482 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~ 559 (919)
+.. -++-....++...-+.++-++-..+|..+... ..-.-+|..+.-..-.+.+|.+++.++.. |+-.
T Consensus 116 ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 116 KAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred hCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 542 23344455666666778877777777765432 23334566665556678999999998874 5555
Q ss_pred hHHHH-HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccc----ccHH--HHHH----------HHHHHHHc
Q 002460 560 AWTTM-ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL----TALE--QGRQ----------IHANLIKL 622 (919)
Q Consensus 560 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----~~~~--~a~~----------~~~~~~~~ 622 (919)
..|.- .-+|.+..-++-+.++++--++. -||+. +..=+.+|..- |+.. +-.+ .-+.+.++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 55553 34677777788777777766654 34432 22223333221 1111 1111 11222222
Q ss_pred CC------C------CC-----chhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCC-------HHHH
Q 002460 623 DC------S------SD-----PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGN-------GEET 678 (919)
Q Consensus 623 ~~------~------~~-----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A 678 (919)
++ + |. +..--.|+--|.+++++.+|..+.++..+..+.-|-.-.-.++.+|+ ...|
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11 0 10 11112255568899999999999998876555544433334455554 4456
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 002460 679 LKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~ 757 (919)
.+.|+-.-+++..-|.+ .--++.+++.-...+|+.+-+++++.. |-...|...|+ +..+++..|++.+|+++|-...
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc
Confidence 66665554555554443 234455555556778999999998876 34444555554 7889999999999999998873
Q ss_pred --CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhC-CCCCc-hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 758 --FEASASMHRALLGACRVQ-GDTETGKWVAEKLMALE-PFDSS-AYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 758 --~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~-p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
.-.|..+|.+++.-|..+ +..+.|..++ +..+ |.+.- ..-+.++.|.+.+.+-=|.+.|..+...
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 224678888888888766 6777666554 4433 32222 2346778899999988888888877643
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.8e-06 Score=86.02 Aligned_cols=385 Identities=16% Similarity=0.102 Sum_probs=221.4
Q ss_pred HHHhcCCHHHHHHHHhc---CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCchHH
Q 002460 435 VYCRNGSMAEAEYLFEN---KDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDE-ITIATAVKACGCLLMLKQ 510 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 510 (919)
+.+..|+++.|...|-. +..+|.+.|..=..+|+..|++++|++=-.+-++ +.|+- ..|...-.+....|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 45667889999999875 3344777888888899999999988876666655 45664 478888888888899999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhcc------CC-CC------ChhhHHHHHHHHHHc------
Q 002460 511 GKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFND------IP-AP------DDVAWTTMISGCVDN------ 571 (919)
Q Consensus 511 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~------ 571 (919)
|..-|..-++.. +.+....+.|.+++... ..+.+.|.. .. .| ....|..++..+-++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 988888766654 45566777777777111 011112211 00 00 111233333322211
Q ss_pred ----CChhHHHHHHHH-----HHhcC-------CCCC------------H----------hHHHHHHHHHcccccHHHHH
Q 002460 572 ----GEEDLALSIYHQ-----MRLSG-------VVPD------------E----------FTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 572 ----g~~~~A~~~~~~-----m~~~g-------~~p~------------~----------~t~~~ll~a~~~~~~~~~a~ 613 (919)
.+...|...+.. +...| ..|. . .-...+.++.-+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011111111110 00000 1110 0 01223334444445555555
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee----------eehHHHHHHHhcCCHHHHHHHHH
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV----------LWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
+-+....... .+..-++.....|...|.+.+....-+...+..-. +...+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 5555555544 34444455566666666665555444433321110 11123345556666777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 002460 684 DMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEA 760 (919)
Q Consensus 684 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p 760 (919)
+.+..-..||.. .+....+++....+... -+.|.. +.-. =..-+.+.|++.+|+..+.++ ...|
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~-kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEERE-KGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 765543333321 11122233333322221 233331 1112 255667889999999999887 4456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHH
Q 002460 761 -SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAK 838 (919)
Q Consensus 761 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~ 838 (919)
|+..|.....++.+.|++..|..-+++.++++|+....|..-+.++....+|++|.+.+.+ +++.+|. .++.+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e----ale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE----ALELDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCchhHHHHHH
Confidence 5567777777778889999999999999999999999999999999999999999999954 4455565 444444
Q ss_pred HHHHHH
Q 002460 839 VEGLIK 844 (919)
Q Consensus 839 l~~l~~ 844 (919)
+.+-..
T Consensus 466 ~~rc~~ 471 (539)
T KOG0548|consen 466 YRRCVE 471 (539)
T ss_pred HHHHHH
Confidence 444433
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00017 Score=77.52 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=119.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH---HHHHHhccCchHHH--HHHHHH-----------HHHhCCCCC
Q 002460 463 MIFGYILSNNSHKALELFSHMHTSGERLDEITIAT---AVKACGCLLMLKQG--KQMHAY-----------AMKSGFELD 526 (919)
Q Consensus 463 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a--~~~~~~-----------~~~~g~~~~ 526 (919)
|.-.+...|+.++|..++....... .+|...... =|.+.....++-.+ ...++. .+...-...
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445666788888888888887764 344422222 22222222221111 000000 000000011
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHhccCCCCC-hhhHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIPAPD-DVAWTTMI-SGCV-DNGEEDLALSIYHQMRLSGVVPDEFTFAILVKAS 603 (919)
Q Consensus 527 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 603 (919)
..--+.|+.+|. +..+.+.++-...+... ...+.+++ .++. +...+.+|.+++...-+....-........+...
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 112234444443 34555666666655422 22233333 2222 2224566666666554432222233344445555
Q ss_pred cccccHHHHHHHHH--------HHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCH
Q 002460 604 SCLTALEQGRQIHA--------NLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNG 675 (919)
Q Consensus 604 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 675 (919)
...|+++.|.+++. .+.+.+..| .+..+++.+|.+.++-+.|..++++..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai-------------------- 444 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI-------------------- 444 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH--------------------
Confidence 66677777777766 333333333 333445666666665555555544322
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 002460 676 EETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELIL 754 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~ 754 (919)
..|..-... ++.. .++.-+...-.+.|..++|..+++++.+ -.+++.....++|.+|++. +.+.|+.+-+
T Consensus 445 ----~~~~~~~t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 ----KWWRKQQTG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ----HHHHHhccc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 111111100 0110 1122222222344677777777777665 2445666677777777654 3666666666
Q ss_pred hCC
Q 002460 755 SMP 757 (919)
Q Consensus 755 ~m~ 757 (919)
.++
T Consensus 516 ~L~ 518 (652)
T KOG2376|consen 516 KLP 518 (652)
T ss_pred cCC
Confidence 664
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=0.0002 Score=77.81 Aligned_cols=318 Identities=15% Similarity=0.119 Sum_probs=184.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHhccCchHHHHHHHHHHHHhCCCCChh
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHTSG-ERLDEITIATAVK------ACGCLLMLKQGKQMHAYAMKSGFELDLC 528 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 528 (919)
....|..+.-++.-.|++..|..++++..+.. -.|+...+..... .....|.++.|.+........ +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 34567777777777788888888777776654 2455555543322 223445556665554432221 112222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhHHHHH-HHHHHcCChhHHH-HHHHHHHhcC---CCCCHhHHHHHHH
Q 002460 529 VSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAWTTMI-SGCVDNGEEDLAL-SIYHQMRLSG---VVPDEFTFAILVK 601 (919)
Q Consensus 529 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~ 601 (919)
.-..-.+.+.+.+++++|..++..+.. ||...|+-.. .++.+-.+.-+++ .+|....+.- -.|-.... +
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----s 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----S 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----H
Confidence 334456678888999999999988764 5656555444 3343333344444 5555544321 11211111 1
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHH---H-HHHHHHhCC--------------CCCeeeeh
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIE---D-AYILFKQMD--------------MRNTVLWN 663 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~ 663 (919)
......-.+....++....+.|+++ ++..+...|-.-...+ + +..+...+. .|....|.
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1112222333444556666667654 2333333332211111 1 111111111 23444555
Q ss_pred H--HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 664 A--MLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 664 ~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
. ++..|-..|+++.|+...+..+.+ .|+.+ -|..=...+.|.|++++|..++++..+ --.||...-+--+.-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHH
Confidence 4 677788999999999999999874 67665 465666789999999999999999876 3456666555667777
Q ss_pred hhcCCHHHHHHHHHhCCCCC-C--------HHHHHHHHH--HHHhcCCHHHHHHHH
Q 002460 741 GRAGRTKEAGELILSMPFEA-S--------ASMHRALLG--ACRVQGDTETGKWVA 785 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p-~--------~~~~~~ll~--~~~~~g~~~~a~~~~ 785 (919)
.|+.+.++|.++.....-+. + .-+|-.+-. ++.++|++.+|..-+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999887652111 2 235555443 577888887776543
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00058 Score=74.43 Aligned_cols=390 Identities=12% Similarity=0.044 Sum_probs=208.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh
Q 002460 428 VSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACG 503 (919)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~ 503 (919)
+.....-.+...|+.++|....+..... +.+.|..+.-.+....++++|+..|+..... .||.. .+.-+--.-+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQI 120 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 3333334456678899998888765544 5677999988888889999999999998874 44443 3333222234
Q ss_pred ccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC-----CChhhHHHH------HHHHHHcC
Q 002460 504 CLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA-----PDDVAWTTM------ISGCVDNG 572 (919)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~l------i~~~~~~g 572 (919)
..++++..........+.. +.....|..+..++.-.|+...|..+.+...+ ++...+.-. .....++|
T Consensus 121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555555555444432 22334456666666667777777666654331 333332221 23345666
Q ss_pred ChhHHHHHHHHHHhcCCCCCHhHHH-HHHHHHcccccHHHHHHHHHHHHHcCCCCCchhh-cHHHHHHHHcCCHHHHH-H
Q 002460 573 EEDLALSIYHQMRLSGVVPDEFTFA-ILVKASSCLTALEQGRQIHANLIKLDCSSDPFVG-ISLVDMYAKCGNIEDAY-I 649 (919)
Q Consensus 573 ~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~-~ 649 (919)
..++|++.+..-... ..|...+. +-...+.+.+++++|..++..++... ||..-| --+..++++--+.-++. .
T Consensus 200 ~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred cHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 677777666553321 11222221 22334556677777777777666654 333333 33344444332323333 4
Q ss_pred HHHhCCCC--CeeeehHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH----HHHHHHHhHH
Q 002460 650 LFKQMDMR--NTVLWNAMLVGLAQ-HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE----AYENFHLMRE 722 (919)
Q Consensus 650 ~~~~~~~~--~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~ 722 (919)
+|....+. ....-.-+--.... ..-.+..-+++..+.+.|++|- |..+.+-|-.-...+- +..+...+..
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 44443311 00000000000111 1112333445566666665542 2333333322222111 1112121111
Q ss_pred h--------cC-CCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 723 K--------YG-IEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 723 ~--------~~-~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
. -. -+|+. .++-+++..+-+.|+++.|+..++.. ...|+.+ .+.+=...+...|+++.|-..++.+.
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 0 00 13443 34456777778888888888888876 4556543 33344455666788888888888888
Q ss_pred hhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 790 ALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 790 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
+++-.|-..--.-++-..++.+.++|.++.......|.
T Consensus 433 elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 433 ELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 88765554444556666677888888888777766654
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2.4e-05 Score=76.47 Aligned_cols=380 Identities=11% Similarity=0.043 Sum_probs=220.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHhc
Q 002460 429 STALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATA-VKACGC 504 (919)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~ 504 (919)
+++.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 445555566777888888887655443 445567777788888888888888888765 34544444321 223334
Q ss_pred cCchHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHHcCCHHHHHHHhccCC-CCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 505 LLMLKQGKQMHAYAMKSGFELDLCVSSGIL--DMYVKCGAMVDAQSIFNDIP-APDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 505 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li--~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.+.+..|.++...+... ++...-..-+ ...-..+++..+..+.++.+ +.+..+.+.......+.|++++|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 45555666665555331 1111111111 11234567777788888887 355555555555567888899999888
Q ss_pred HHHHhc-CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCC-------------c--------hhhcHHHH---
Q 002460 582 HQMRLS-GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSD-------------P--------FVGISLVD--- 636 (919)
Q Consensus 582 ~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-------------~--------~~~~~li~--- 636 (919)
+...+- |..| ...|+..+ +.-+.++.+.|.+...+++++|+... + -+-++++.
T Consensus 168 qaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 887764 4544 45566544 34466788888888888887765421 1 11123333
Q ss_pred ----HHHHcCCHHHHHHHHHhCCCC-----CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhc
Q 002460 637 ----MYAKCGNIEDAYILFKQMDMR-----NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSY 706 (919)
Q Consensus 637 ----~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 706 (919)
.+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+++ +.| ...||..++-.||+
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhh
Confidence 456789999999999999854 777776654332 23455555555555665 355 45699999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCH----HHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGAC-RVQGDT----ETG 781 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~-~~~g~~----~~a 781 (919)
...++-|..++.+-..-.-.-.+...|+.|=.+....-..++|.+-+..+...-....-..-+..- .++.+- ..+
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 988888887764322110001123344433333334456777776665542100000111111111 122222 223
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
..-+++.+++- -...+.-+++|+...++..+.+.|..
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRK 439 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHH
Confidence 34455555542 12456677889999999999888754
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=2.3e-05 Score=85.85 Aligned_cols=294 Identities=11% Similarity=-0.044 Sum_probs=166.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHhccCC---CCChhh---HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHH---HH
Q 002460 530 SSGILDMYVKCGAMVDAQSIFNDIP---APDDVA---WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAI---LV 600 (919)
Q Consensus 530 ~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll 600 (919)
+..+...|...|+.+++.+.+.... ..+... .......+...|++++|.+.+++..+.. +.|...+.. ..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence 4444455555566555544443322 111111 1222334567788888888888877652 223223331 11
Q ss_pred HHHcccccHHHHHHHHHHHHHcCCCCC-chhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHH
Q 002460 601 KASSCLTALEQGRQIHANLIKLDCSSD-PFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 601 ~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 676 (919)
......+..+.+.+.... .....|+ ......+...+...|++++|...+++... .+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111223444444444433 1122222 23334556678888999999998888763 34567777888888999999
Q ss_pred HHHHHHHHHHHcCC-CCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 002460 677 ETLKLFEDMKAHGV-EPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHY-S--FLVDALGRAGRTKEAG 750 (919)
Q Consensus 677 ~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~li~~~~r~g~~~eA~ 750 (919)
+|+..+++.....- .|+. ..|..+...+...|++++|..+++.........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999988877421 1222 234567777888899999999998875321111111111 1 2233333444333332
Q ss_pred HH---HHh---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------CCchHHHHHHHHhhcCCcch
Q 002460 751 EL---ILS---M-PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF---------DSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 751 ~~---~~~---m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~y~~~g~~~~ 814 (919)
+. ... . +.............++...|+.+.|...++.+....-. ......+.+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 22 111 1 11111222234555667778899999888887653221 24456678888999999999
Q ss_pred HHHHHHHHHhCC
Q 002460 815 VTSARGEMKRKN 826 (919)
Q Consensus 815 a~~~~~~m~~~~ 826 (919)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 998887665443
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=0.00016 Score=82.07 Aligned_cols=559 Identities=15% Similarity=0.074 Sum_probs=306.8
Q ss_pred HHHHHHHHhCCCCc-HhHHHHHHHHHHhcCChhHHHHHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 002460 180 TVHGYALKIGLVWD-EFVSGALVNIYSKFGKIREAKFLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSG 255 (919)
Q Consensus 180 ~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 255 (919)
.++..+....+.++ ...|..|-..|+..-+...|.+.|+..-+ -|..+|.....-|++..++++|+.+.-. ...
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~--~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR--AAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH--Hhh
Confidence 33333333344444 35788999999988899999999998766 3667899999999999999999999332 222
Q ss_pred CCCCh-hhHHHHHHHhhhhcc-h-hHHHHHHHHH--HHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCC
Q 002460 256 LCPDD-ESVQCVLGVISDLGK-R-HEEQVQAYAI--KLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330 (919)
Q Consensus 256 ~~p~~-~t~~~ll~~~~~~~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (919)
..|-. ..++-+ ..|. . ...+.+.-+. +...+.++.|...|..+..+|...|++..|+++|++...- .|
T Consensus 555 ka~a~~~k~nW~-----~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 555 KAPAFACKENWV-----QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred hchHHHHHhhhh-----hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22211 111111 1222 1 2333333332 3456778899999999999999999999999999887643 44
Q ss_pred CchhHHHHhhh--hcCCCChhHHHHHHHHHHHhCCCccchHHhHHHHHhHhcCccCCCCCchhhHHHHHHhhcCCccchh
Q 002460 331 DSVTFLVALAA--VAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLH 408 (919)
Q Consensus 331 d~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~ 408 (919)
+. +|...-.+ -+..|...++...++.++..-- ......+.|...+.++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~a--------------------------- 678 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDA--------------------------- 678 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHH---------------------------
Confidence 43 33322222 2456778888777776654310 00011111111111111
Q ss_pred hhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-------HHHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHH
Q 002460 409 LSKQIHVHAIKNDTVADSFVSTALIDVYCRNGS-------MAEAEYLFENKD----GFDLATWNAMIFGYILSNNSHKAL 477 (919)
Q Consensus 409 ~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~-------~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 477 (919)
..+.-.|- ++++.+.|--.. ..|...|-.+-+ |.
T Consensus 679 -------------------------kd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd----------ac 723 (1238)
T KOG1127|consen 679 -------------------------KDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD----------AC 723 (1238)
T ss_pred -------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH----------HH
Confidence 00011111 122222221110 112223333222 22
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCch---H---HHHHHHHHHHHhCCCCChhHHHHHHHHHHH----cC----CH
Q 002460 478 ELFSHMHTSGERLDEITIATAVKACGCLLML---K---QGKQMHAYAMKSGFELDLCVSSGILDMYVK----CG----AM 543 (919)
Q Consensus 478 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~ 543 (919)
.+|-... .. .|+......+..-.-..+.. + .|-+.+ .....+..+...|..|+.-|.+ +| +.
T Consensus 724 ~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 724 YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 2232222 11 22222222222212222221 1 011111 1111122334444444443333 22 23
Q ss_pred HHHHHHhccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 544 VDAQSIFNDIP---APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 544 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
..|...+.... ..+...||.|--. ..-|.+.-|...|-+-... .+-...+|..+--.|....+++.|.+.+....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35566665443 3677788887655 4556676676666655443 23355677777777888889999999888777
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhC-----C---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM-----D---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAH---- 688 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 688 (919)
...+ .+..-+--....-...|+.-++..+|.-- . .++..-|-+-..-...+|+.++-+...+++...
T Consensus 878 SLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 6542 22233322222333567777777777642 1 134444444444455666666544443332211
Q ss_pred ----CCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 002460 689 ----GVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF----LVDALGRAGRTKEAGELILSMPFE 759 (919)
Q Consensus 689 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~----li~~~~r~g~~~eA~~~~~~m~~~ 759 (919)
+-.| +...|........+.+.+++|.+...+...-...+-+...|+. +.+++...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1234 4567888888888888888888877766543333445555653 344556678888888777776666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh---hcCCcchHHHHH
Q 002460 760 ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA---AANQWDDVTSAR 819 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~a~~~~ 819 (919)
-+..+-.+-+..+ -.|+++.+...+++++.+..++....++++.+.. .++.-+.|....
T Consensus 1037 vdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred HHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 6666666655553 3489999999999999987766665566665544 445556666544
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=2.3e-05 Score=78.06 Aligned_cols=189 Identities=16% Similarity=0.107 Sum_probs=98.1
Q ss_pred cccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHH
Q 002460 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLK 680 (919)
Q Consensus 604 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 680 (919)
...|+...+......+++.. +.|...+..-.++|...|++..|+.=++... ..+....--+-..+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555554433 3455556666667777777777766555443 3445555556666677777777777
Q ss_pred HHHHHHHcCCCCChhH-H---HHH---------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHhh
Q 002460 681 LFEDMKAHGVEPDSVT-F---IGV---------LSACSYTGLVSEAYENFHLMREKYGIEPE-----VEHYSFLVDALGR 742 (919)
Q Consensus 681 ~~~~m~~~g~~p~~~t-~---~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~~~r 742 (919)
..++-++ +.||... | ..| +......+.|.++.+-.+...+ ..|. ...+..+-..+..
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 7777766 5666542 1 111 0012223344444444433332 2232 1222333344445
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 743 AGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
.|++-||++...+. .+.|| +.++.--..++.....++.|+.-++++.+.+|+|..+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 55666666555543 34443 4445445555555556666666666666666655433
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=4.9e-08 Score=64.01 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=27.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCC
Q 002460 189 GLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQ 221 (919)
Q Consensus 189 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 221 (919)
|+.||.++||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=1.2e-05 Score=76.23 Aligned_cols=162 Identities=19% Similarity=0.121 Sum_probs=90.5
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhc
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSY 706 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 706 (919)
+..+...|.+.|..+.|.+-|++.. ..+-.+.|....-+|..|++++|...|++....---| -..||..+.-+..+
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 3344555555555555555555443 2344455555555666666666666666665531111 12355555555566
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKW 783 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 783 (919)
.|+.+.|.++|++..+ +.|+ ......+.+.....|++-+|..+++.. ...++.......+..-...||.+.+-+
T Consensus 152 ~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 152 AGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred cCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 6666666666666554 2333 445555666666666666666666654 223555555555555566666666666
Q ss_pred HHHHHHhhCCCC
Q 002460 784 VAEKLMALEPFD 795 (919)
Q Consensus 784 ~~~~~~~~~p~~ 795 (919)
.-.++....|..
T Consensus 229 Y~~qL~r~fP~s 240 (250)
T COG3063 229 YQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhCCCc
Confidence 666666666643
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.57 E-value=2.6e-05 Score=87.00 Aligned_cols=257 Identities=13% Similarity=0.071 Sum_probs=127.2
Q ss_pred HHHHHHcCCHHHHHHHhccCCC--CChhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHc----c-
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPA--PDDVAW-TTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASS----C- 605 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~- 605 (919)
...+...|++++|.+.++.-.. .|..+| ......|.+.|+.++|..+|+.+++. .|+...|...+..|. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888876553 454444 44566777888888888888888876 356666655554443 1
Q ss_pred -cccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHH
Q 002460 606 -LTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFED 684 (919)
Q Consensus 606 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 684 (919)
....+.-.++++.+...-...+.. ..+.-.+.....+ -..+..++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F------------------------------~~~~~~yl~~ 136 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEF------------------------------KERLDEYLRP 136 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence 123444445555443322111111 1011001110111 1223334444
Q ss_pred HHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhc-------------CCCCCh--hHHHHHHHHHhhcCCHHHH
Q 002460 685 MKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKY-------------GIEPEV--EHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 685 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~y~~li~~~~r~g~~~eA 749 (919)
++..|+++ +|..|-..|......+-..+++....... .-.|+. .++..+...|.+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444332 33333333443333333333333332211 011222 2334445555566666666
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 750 GELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 750 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
++++++. ...|+ +..+..-...+.+.|++++|...++.+.++++.|-..-.-.+..+-++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 6666654 33443 234444444555556666666666666666666555555555555666666666666555544443
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=92.75 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---------HHHHHHHHHhccC
Q 002460 641 CGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV---------TFIGVLSACSYTG 708 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g 708 (919)
.++=..|+..+.+.. ..|..+.-+|.-.|...|.-.+|+.+++..+... |-.. .+..- ....+..
T Consensus 332 NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~ 408 (579)
T KOG1125|consen 332 NENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSS 408 (579)
T ss_pred ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCccccccCC-cCCCCHH
Confidence 333334444444433 2244455556666777777777777777776532 1100 00000 1222333
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002460 709 LVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAE 786 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 786 (919)
......++|-.+....+.++|...+.+|.-+|--.|.+++|.+.|+.+ ..+| |..+|+-|......-.+.++|+.+|.
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 445666777777766677788999999999999999999999999987 6677 66789999888888889999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh---C--CCCCCc--hHHHHHHHHHHHHHH
Q 002460 787 KLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR---K--NVKKDP--ADLIFAKVEGLIKRI 846 (919)
Q Consensus 787 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~---~--~~~~~~--~~~i~~~l~~l~~~~ 846 (919)
+++++.|.-..+...|+-.|...|.++||.+.+=.... + +-.+.| .+.|+..|......|
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987654432 2 122222 367888888555544
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.54 E-value=2.3e-06 Score=88.77 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=79.5
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh----ccCCHH
Q 002460 636 DMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS----YTGLVS 711 (919)
Q Consensus 636 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 711 (919)
.+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHH
Confidence 3455567777776666554 33444455666777777777777777777663 3333 3333333322 223566
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDT-ETGKWVAEKL 788 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 788 (919)
+|..+|+++.++ ..+++...+.+.-+....|+++||.+++++. ...| ++.++-.++..+...|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 777777776553 3345555555555555666666666555543 2223 233444444444444444 4455555555
Q ss_pred HhhCCC
Q 002460 789 MALEPF 794 (919)
Q Consensus 789 ~~~~p~ 794 (919)
....|+
T Consensus 263 ~~~~p~ 268 (290)
T PF04733_consen 263 KQSNPN 268 (290)
T ss_dssp HHHTTT
T ss_pred HHhCCC
Confidence 555554
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=3.7e-05 Score=85.75 Aligned_cols=246 Identities=16% Similarity=0.124 Sum_probs=143.1
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhH-HHHHHHHHHc-----
Q 002460 500 KACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAW-TTMISGCVDN----- 571 (919)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~~~~~----- 571 (919)
..+...|+.++|.+.+..-.+. +.....+.......|.+.|+.++|..++..+.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4456789999999998664333 344466778889999999999999999999985 544444 4455544222
Q ss_pred CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHH-HHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 572 GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALE-QGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 572 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
...+...++|+++...- |.......+.-.+.....+. .+..+.....+.|+++ +++.|-..|....+.+-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 24677788899887753 54444443333333323333 3455667777778654 555666667655444444444
Q ss_pred HHhCC------------------CCCeeee--hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCC
Q 002460 651 FKQMD------------------MRNTVLW--NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGL 709 (919)
Q Consensus 651 ~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~ 709 (919)
+.... .|....| .-+...|-..|++++|+++.++.++. .|+.+ .|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 0111123 33344455566666666666666653 45433 45555555666666
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 710 VSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 710 ~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+++|.+..+.... +.+ |...-+-.+..+.|+|+.++|.+++...
T Consensus 244 ~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 6666666555543 222 3444444555555666666666555544
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1.1e-05 Score=78.94 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 002460 707 TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGAC-RVQGD--TETG 781 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 781 (919)
.+..+++...++...+. -+.+...|..+...|...|++++|...+++. ...| +..++..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777666552 3345888888999999999999999999886 4556 566777777663 56676 5999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
..+++++++.+|+++.++.+|+..+...|++++|...++++.+..-.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999998876543
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=6.4e-06 Score=84.19 Aligned_cols=178 Identities=10% Similarity=-0.005 Sum_probs=110.7
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCC--CC-e---eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----HH
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDM--RN-T---VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV----TF 697 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 697 (919)
...+..++..|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 33444566667777777777777776652 21 1 24566667777777777777777777763 44322 23
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 002460 698 IGVLSACSYT--------GLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRAL 768 (919)
Q Consensus 698 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~l 768 (919)
..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHHH
Confidence 3344444433 5666677777766553 2332 122111111 0000000 0 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
...+...|+.+.|...++++++..|+++ .++..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999999987654 68899999999999999999998877654
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=4.2e-06 Score=77.38 Aligned_cols=105 Identities=12% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ 775 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 775 (919)
.+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++. ...| ++..|..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 344445555566666555555543 223 3455555555555555555555555554 2233 344455555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 806 (919)
|+.++|...+++++++.|+++..+..++++.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5555555555555555555555555554443
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=1.5e-07 Score=61.70 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCCCcchhhHHHHHHHhCCChhHHHHHhccCC
Q 002460 83 SQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMP 115 (919)
Q Consensus 83 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 115 (919)
|+.||.++||.||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=2e-06 Score=89.17 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHhCCCCCeee---ehHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 002460 642 GNIEDAYILFKQMDMRNTVL---WNAML--VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~---~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 716 (919)
++-+.+..-+++........ +-.++ ..+...|++++|++++++- .+.......+..+...+++|.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555443222111 11222 3455679999999988652 3445566678889999999999999
Q ss_pred HHHhHHhcCCCCChh---HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 717 FHLMREKYGIEPEVE---HYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~---~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
++.|.+ +..|.. ...+.+..+.-.+++.+|.-+|+++ ...+++.+++.+..+....|++++|+..++++++.
T Consensus 154 l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 154 LKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999964 344422 2223344333345799999999998 34577888888888889999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCc-chHHHHHHHHHhC
Q 002460 792 EPFDSSAYVLLSNIFAAANQW-DDVTSARGEMKRK 825 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~ 825 (919)
+|+|+.+...++-+....|+. +.+.+++..++..
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999998 4566788777754
No 104
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.0061 Score=68.17 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.|..|...|....+|..|-+.+++|..+-
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 57789999999999999999999887653
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00046 Score=76.65 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=82.3
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 002460 502 CGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIY 581 (919)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 581 (919)
.-..|+.+.|..++..+.. |-+++...|-.|+.++|-.+-++- .|......|...|-..|++.+|+..|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344555555555554432 223444455556666665554432 34555566777788888888888887
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHcccc---------------cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHH
Q 002460 582 HQMRLSGVVPDEFTFAILVKASSCLT---------------ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIED 646 (919)
Q Consensus 582 ~~m~~~g~~p~~~t~~~ll~a~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 646 (919)
.+.+ +|...|+.|-..+ +.-.|-.+++ +.|... .--+..|-|.|.+.+
T Consensus 991 TrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~~-----~~AVmLYHkAGm~~k 1053 (1416)
T KOG3617|consen 991 TRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGYA-----HKAVMLYHKAGMIGK 1053 (1416)
T ss_pred HHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchhh-----hHHHHHHHhhcchHH
Confidence 7654 2333333332222 1222222222 222111 123456788888888
Q ss_pred HHHHHHhCC--------------CCCeeeehHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 647 AYILFKQMD--------------MRNTVLWNAMLVGLAQHGNGEETLKLFEDMK 686 (919)
Q Consensus 647 A~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 686 (919)
|+++--+-. ..|+...+--..-+..+.++++|..++-...
T Consensus 1054 ALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1054 ALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 877632222 1233344444455667777888777765544
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00068 Score=84.56 Aligned_cols=190 Identities=9% Similarity=-0.092 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCch
Q 002460 431 ALIDVYCRNGSMAEAEYLFENKDGFDLAT--WNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLML 508 (919)
Q Consensus 431 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 508 (919)
.....+...|++.+|..........+... .......+...|+++.+...+..+.......+..........+...+++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33455666777777777666555432211 1112233445677777666666553221111222222223333455677
Q ss_pred HHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHHcCCHHHHHHHhccCC----CCCh----hhHHHHHHHHHHcC
Q 002460 509 KQGKQMHAYAMKSGFE------LD--LCVSSGILDMYVKCGAMVDAQSIFNDIP----APDD----VAWTTMISGCVDNG 572 (919)
Q Consensus 509 ~~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~----~~~~~li~~~~~~g 572 (919)
+++......+.+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 7777776665442110 11 1111222334456677777766665432 1111 23344455556667
Q ss_pred ChhHHHHHHHHHHhcCCC---CC--HhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 573 EEDLALSIYHQMRLSGVV---PD--EFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 573 ~~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
++++|...+.+.....-. +. ..++..+...+...|+++.|...+....
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766665432110 11 1123333444555566666666554443
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.41 E-value=0.0024 Score=68.27 Aligned_cols=172 Identities=16% Similarity=0.139 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhc-CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCC-CchhhcHHHHHHHHcCCHHHHHHHH
Q 002460 574 EDLALSIYHQMRLS-GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSS-DPFVGISLVDMYAKCGNIEDAYILF 651 (919)
Q Consensus 574 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 651 (919)
.+.....+++.+.. ...|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++++++++++-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34444455554432 22333 345556666666667777777777777766655 6777777777666 45667777777
Q ss_pred HhCCC--CC-eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-
Q 002460 652 KQMDM--RN-TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYG- 725 (919)
Q Consensus 652 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 725 (919)
+--.+ +| +.--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75442 23 333344555566667777777777777776666654 3677777777777777777777666666544
Q ss_pred -CCCChhHHHHHHHHHhhcCCHH
Q 002460 726 -IEPEVEHYSFLVDALGRAGRTK 747 (919)
Q Consensus 726 -~~p~~~~y~~li~~~~r~g~~~ 747 (919)
.+|...+-..+++.|+-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 4444445555566665555443
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=2.2e-05 Score=91.74 Aligned_cols=213 Identities=17% Similarity=0.152 Sum_probs=176.6
Q ss_pred CCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC--------CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hH
Q 002460 626 SDPFVGISLVDMYAKCGNIEDAYILFKQMDMR--------NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS-VT 696 (919)
Q Consensus 626 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 696 (919)
.+...|-..|......+++++|.+++++.... -...|-++++.-...|.-+...++|+++.+. -|. ..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 34456666777788899999999999988632 3458999999988999889999999999873 343 46
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA---SASMHRALLGAC 772 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 772 (919)
|..|+..|.+.+..++|.++++.|.++++ -....|...++.+.++.+-++|..+++++ ..-| -.....-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999877 66788999999999999999999999885 3333 334555566667
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLI 843 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~ 843 (919)
.++||.++|+.+++.++.-.|.-...|..++.+-.+.|..+.+..+|++....++.+.--+..|.++-+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998887554455665555444
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=3.7e-05 Score=89.17 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=112.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 002460 691 EPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEASAS-MHRA 767 (919)
Q Consensus 691 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ 767 (919)
..+...+..|..+..+.|..++|..+++...+ +.|+ ......++..+.+.+++++|+..+++. ...|+.. ....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34577888899999999999999999999864 5786 667778889999999999999999987 6677554 5555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+..++...|++++|..+|++++..+|+++.+++.++.++...|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666677779999999999999999999999999999999999999999999887754
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00026 Score=69.46 Aligned_cols=272 Identities=14% Similarity=0.115 Sum_probs=152.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHhccCCC--CChhhHHH-HHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 002460 526 DLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAWTT-MISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKA 602 (919)
Q Consensus 526 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 602 (919)
+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.+.+.+|+.+...|... |+...-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqa 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQA 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 445556667777777777777777777653 33333322 134556677888888888877653 222211111111
Q ss_pred --HcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeehHHHHHHHhcCCHH
Q 002460 603 --SSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM----RNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 603 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 676 (919)
.-+.+++..+..+...... +.+..+.+...-...+.|++++|.+-|+...+ .....||.-+ +..+.|+++
T Consensus 120 AIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qya 195 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYA 195 (459)
T ss_pred HHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHH
Confidence 1123344444444333221 11222333333344566777777777766553 2334455433 333556677
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhH-------HHHHHHHHhhcCCHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEH-------YSFLVDALGRAGRTKEA 749 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------y~~li~~~~r~g~~~eA 749 (919)
.|+++..+.++.|++-.+.. + -|..-++..+ +.. | .|-.-| +|.-...+-+.|+++.|
T Consensus 196 sALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred HHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHH
Confidence 77777777777665522110 0 0111111110 000 0 011122 33333345688999999
Q ss_pred HHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 750 GELILSMP----FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 750 ~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.+.+..|| .+-|+++...+.- --..+++..+.+-++-+++++|--+.++..+.-+|++..-++-|..++-
T Consensus 261 ~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 261 QEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 99999995 2346776655432 2345677778888888899999888899999999999999999888774
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=1.2e-05 Score=74.39 Aligned_cols=99 Identities=13% Similarity=-0.034 Sum_probs=87.1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 002460 726 IEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803 (919)
Q Consensus 726 ~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 803 (919)
+.|+ .+..+...+...|++++|...++.. ...| +...|..+..+|...|++++|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 3556788899999999999999986 4455 6788999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHhCC
Q 002460 804 NIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 804 ~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998776543
No 112
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=9.3e-06 Score=73.51 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
.+..-.+...+...|++++|..+|+-. ...| +..-|..|...|...|++++|...+.++..++|+||.++..++.+|-
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445555666778999999999999987 4566 56788889989999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHH
Q 002460 808 AANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIK 847 (919)
Q Consensus 808 ~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~ 847 (919)
..|+.+.|.+.|+......-.++-..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence 9999999999998877654222222555555555555443
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.31 E-value=0.00082 Score=73.60 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHhHHHH-HHHHHcccccHHHHHHHHHHHHHcCCCCCchhhc---
Q 002460 558 DVAWTTMISGCVDNGEEDLALSIYHQMRLSGV-VPDEFTFAI-LVKASSCLTALEQGRQIHANLIKLDCSSDPFVGI--- 632 (919)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 632 (919)
...|..+...+...|+.+++.+.+.+..+... .++...... ....+...|++++|..+++.+.+... .+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 44666677777788888888777777654321 223322222 22345677899999999998887642 2333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDMRNTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTG 708 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 708 (919)
.+.......|..+.+.+.+......+.. .+..+...+...|++++|+..+++..+. .|+ ...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 1222223356667777777653332222 3344556888999999999999999994 565 456778888899999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhcCCHH
Q 002460 709 LVSEAYENFHLMREKYGIEPEV--EHYSFLVDALGRAGRTKEAGELILSM-PFEA--SASMH--R--ALLGACRVQGDTE 779 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~g~~~ 779 (919)
++++|..+++.........|+. ..|..+...+...|++++|..++++. ...| ..... . .++.-....|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 34567888999999999999999986 2233 21111 1 3333445556544
Q ss_pred HHHHH---HHHHHhhCCCC--CchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 780 TGKWV---AEKLMALEPFD--SSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 780 ~a~~~---~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.+.+. ........|.. ...-...+.++...|++++|...++.++...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44443 22221111221 1223367778889999999999998887643
No 114
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=9.1e-05 Score=77.96 Aligned_cols=210 Identities=11% Similarity=0.072 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHH
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA 639 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 639 (919)
+++.+-..+...++.++|+.++.++++. .|+..| +++....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yt----------------------------------aW~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYT----------------------------------VWHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHH----------------------------------HHHHHHHHHH
Confidence 3444555555666677777777766653 344332 1222222333
Q ss_pred HcC-CHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCH--HHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHH
Q 002460 640 KCG-NIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNG--EETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSE 712 (919)
Q Consensus 640 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 712 (919)
+.| ++++++..++++. .++..+|+.....+.+.|+. ++++.+++++++ +.| |..+|.....++.+.|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHH
Confidence 334 4567777766655 23445666655555556653 667888888887 355 55677777777788888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----CHH
Q 002460 713 AYENFHLMREKYGIEPEVEHYSFLVDALGRA---GR----TKEAGELILSM-PFEA-SASMHRALLGACRVQG----DTE 779 (919)
Q Consensus 713 a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~---g~----~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g----~~~ 779 (919)
+++.++.+.+. . .-+...|+....++.+. |. .+++.++..++ ...| |...|+.+.+.+..++ +..
T Consensus 161 eL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 88888888763 1 22345555555444433 22 24566666443 5555 6688999888887743 456
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhc
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAA 809 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 809 (919)
+|.....+++..+|+++.+...|+.+|...
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 688888999999999999999999999864
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0058 Score=61.55 Aligned_cols=301 Identities=12% Similarity=0.031 Sum_probs=187.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcc
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMI---FGYILSNNSHKALELFSHMHTSGERLDEITIAT-AVKACGCL 505 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 505 (919)
--+-..+...|++.+|..-|....+-|+..|-++. ..|...|+..-|+.-|.+..+ .+||-..-.. --..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34555666677888888888877777777776664 467777887777777777766 4566432211 11233455
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
|.++.|..-|..+++....-. .....+.+.-..++-. .....+..+..+|+...|++....++
T Consensus 120 Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 666666666666665432110 0111111111111110 01123444556777888888887777
Q ss_pred hcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee-----
Q 002460 586 LSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV----- 660 (919)
Q Consensus 586 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----- 660 (919)
+. .+.|...+..-..+|...|.+..|..=+..+.+..-..+...| -+-..+.+.|+.+.++....+..+-|+.
T Consensus 183 Ei-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 183 EI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 64 2335555555666777778777777666666555544333344 3667777888888888877777643222
Q ss_pred -eehHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 002460 661 -LWNAM---------LVGLAQHGNGEETLKLFEDMKAHGVEPD--SV---TFIGVLSACSYTGLVSEAYENFHLMREKYG 725 (919)
Q Consensus 661 -~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 725 (919)
.|..+ +......+++.++++..+..++. .|. .+ .|..+-.++...|.+.+|++...+.. .
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~ 335 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---D 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---h
Confidence 12111 12345677888888888888774 454 22 34445556778899999999888775 5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 726 IEPE-VEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 726 ~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+.|+ +.++.--.++|.-...+++|+.-+++.
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6776 888888889999999999999999887
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=8.2e-05 Score=72.35 Aligned_cols=156 Identities=10% Similarity=0.007 Sum_probs=112.6
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 002460 691 EPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRAL 768 (919)
Q Consensus 691 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~l 768 (919)
.|+......+-.++...|+-+.+..+...... ...-+.+....++....+.|++.+|...+++. +.++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55333225566677778888887777666543 23334556666888888999999999998887 445678888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
..+|-+.|+++.|...+.+++++.|+++.++..|+-.|.-.|+.++|..++......+... ..|-.-|..+......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad---~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD---SRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHhhcCC
Confidence 8889999999999999999999999999999999999999999999998887666544321 3344444444443333
Q ss_pred CCc
Q 002460 849 GGY 851 (919)
Q Consensus 849 ~g~ 851 (919)
.++
T Consensus 218 ~~~ 220 (257)
T COG5010 218 FRE 220 (257)
T ss_pred hHH
Confidence 333
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=4.8e-05 Score=81.64 Aligned_cols=212 Identities=16% Similarity=0.110 Sum_probs=144.1
Q ss_pred CchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChhHHHHHHH
Q 002460 506 LMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA---PDDVAWTTMISGCVDNGEEDLALSIYH 582 (919)
Q Consensus 506 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (919)
|++.+|.-.++.+++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.|+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444444444444433 34556666666666777776667666665543 456677777788888888889999888
Q ss_pred HHHhcCCC--------CCHhHHHHHHHHHcccccHHHHHHHH-HHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 583 QMRLSGVV--------PDEFTFAILVKASSCLTALEQGRQIH-ANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 583 ~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
.-+....+ ++..+-.. ........+....++| +.....+...|..++..|.-.|--.|++++|...|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 87654211 00000000 1122223344445554 4445566567888888899999999999999999998
Q ss_pred CC--C-CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 654 MD--M-RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 654 ~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
.. + .|-..||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-....
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 76 3 3677899999999999999999999999998 789876 444466678999999999988766543
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=3e-05 Score=71.28 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=81.8
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 002460 725 GIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVL 801 (919)
Q Consensus 725 ~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 801 (919)
...|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34453 455667777788888888888888876 4344 56677778888888899999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 802 LSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 802 l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
++.+|...|++++|...++...+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987666543
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=2.6e-06 Score=56.90 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=33.1
Q ss_pred eeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCh
Q 002460 226 VLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDD 260 (919)
Q Consensus 226 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (919)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999983
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00015 Score=71.06 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=117.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 713 (919)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++.++. .| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456888888887765554433221 0 122366778888888888874 55 556888899999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEP-EVEHYSFLVDAL-GRAGR--TKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p-~~~~y~~li~~~-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
...|++... +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998865 456 577888888864 67787 59999999987 5556 567788888889999999999999999
Q ss_pred HHhhCCCCCchHH
Q 002460 788 LMALEPFDSSAYV 800 (919)
Q Consensus 788 ~~~~~p~~~~~~~ 800 (919)
+++++|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765544
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=4.3e-05 Score=84.04 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=121.9
Q ss_pred HHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeehHHHHHHHhcCCHH
Q 002460 599 LVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--MRNTVLWNAMLVGLAQHGNGE 676 (919)
Q Consensus 599 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 676 (919)
+...+...|-...|..++.++.. +.-+|.+|+..|+..+|..+..+-. +||...|..+.......--++
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 33444444555555555544322 2234555555555555555444333 234444444444444444445
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~ 755 (919)
+|.++++.-... .-..+..-....++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 555554433221 000000001124555555555554432 333 345566666666677888888887776
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 756 M-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 756 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
. ..+|| ...|+++-.++.++|+-.+|...++++++-+-++...+.+..-+-.+.|.|++|.+.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4 56775 4578888888888888888888888888888777777777777778888899888888877653
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=5.1e-05 Score=83.53 Aligned_cols=217 Identities=13% Similarity=0.091 Sum_probs=160.2
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002460 522 GFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVK 601 (919)
Q Consensus 522 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 601 (919)
+++|-......+...+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666677778889999999999999999876 5677788999999999999999988877 4788888888888
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEET 678 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 678 (919)
.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777788888887665332 111122222346788888888876543 2455777777777788888888
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 679 LKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 679 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
.+.|..-.. ..||.. .|+.+-.+|.+.|.-.+|...+.+..+- . .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888888776 577665 6888888888888888888888777662 3 333444555555667788888888887776
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00019 Score=83.42 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=100.2
Q ss_pred CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 002460 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSF 735 (919)
Q Consensus 658 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 735 (919)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+++++|...+++... ..|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 455666677777788888888888888877 577665 566677778888888888888777754 3454 667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 002460 736 LVDALGRAGRTKEAGELILSMP-FEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 799 (919)
+..++...|++++|.++|++.- ..| +..+|-++..++...|+.+.|..+++++++....-...|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7778888888888888888762 334 356777777788888888888888888887765444443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=0.00027 Score=74.78 Aligned_cols=144 Identities=16% Similarity=0.121 Sum_probs=85.8
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV-LSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVD 738 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~ 738 (919)
.+--....+...|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++++.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444455666777777777776663 5655544433 3456666777777777766653 3454 444555666
Q ss_pred HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 739 ALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
+|.+.|++.+|...++.. ..+-|+..|..|..+|...|+..++..+. +..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 666777777777766665 22235566666777777776655554433 34455567777777
Q ss_pred HHHHHHHhCC
Q 002460 817 SARGEMKRKN 826 (919)
Q Consensus 817 ~~~~~m~~~~ 826 (919)
...+..+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7666666554
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.07 E-value=0.00013 Score=74.55 Aligned_cols=182 Identities=12% Similarity=-0.003 Sum_probs=126.4
Q ss_pred CCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCC--CchhhcHHHHHHHHcCCHHHHHHHHHhCCC--C-Cee---ee
Q 002460 591 PDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSS--DPFVGISLVDMYAKCGNIEDAYILFKQMDM--R-NTV---LW 662 (919)
Q Consensus 591 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~ 662 (919)
.....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...++++.. | +.. +|
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445567778888999999999999999988765321 123566788999999999999999999863 3 222 45
Q ss_pred hHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002460 663 NAMLVGLAQH--------GNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHY 733 (919)
Q Consensus 663 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 733 (919)
..+..++.+. |+.++|.+.|+++.+. .|+.. ....+..... ... .. . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH-H--------HHH
Confidence 5566666654 7899999999999884 66653 2221111100 000 00 0 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 734 SFLVDALGRAGRTKEAGELILSM----PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 734 ~~li~~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
..+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34667788899999999888776 3333 346788888889999999999998887766555
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.02 E-value=0.0044 Score=77.30 Aligned_cols=186 Identities=9% Similarity=-0.084 Sum_probs=109.7
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC--C----CCCHhHH--HHHHHHH
Q 002460 435 VYCRNGSMAEAEYLFENKDG----FDLATWNAMIFGYILSNNSHKALELFSHMHTSG--E----RLDEITI--ATAVKAC 502 (919)
Q Consensus 435 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~t~--~~ll~~~ 502 (919)
.+...|+++.+...++.++. .+..........+...|++++|...+....+.- . .+....- ...-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777887777777642 233333344455567789999998888775431 1 1111111 1122234
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHcCCHHHHHHHhccCCC-------CC--hhhHHHHHHHHH
Q 002460 503 GCLLMLKQGKQMHAYAMKSGFELDL----CVSSGILDMYVKCGAMVDAQSIFNDIPA-------PD--DVAWTTMISGCV 569 (919)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~ 569 (919)
...|+++.+...+....+.-...+. ...+.+...+...|++++|...+++... +. ..+++.+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678999999998887763212221 2345666777889999999888876642 11 224455666788
Q ss_pred HcCChhHHHHHHHHHHhc----CCC--C-CHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 570 DNGEEDLALSIYHQMRLS----GVV--P-DEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
..|++++|...+++.... |.. | ....+..+...+...|++++|...+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 899999999998886542 211 1 11222233333444566666666655543
No 127
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.011 Score=63.49 Aligned_cols=401 Identities=11% Similarity=0.034 Sum_probs=241.9
Q ss_pred ccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHH
Q 002460 404 PEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG--FD-LATWNAMIFGYILSNNSHKALELF 480 (919)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 480 (919)
.++++.+-..+-..+..... |.+.|..-..+|++.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|+.-|
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred cccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 45677777777777776665 889999999999999999998765544333 23 236888888999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhcc---CchHHHHHHHHHHHH----hCCCCChhHHHHHHH----------HHHHcCCH
Q 002460 481 SHMHTSGERLDEITIATAVKACGCL---LMLKQGKQMHAYAMK----SGFELDLCVSSGILD----------MYVKCGAM 543 (919)
Q Consensus 481 ~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~----~g~~~~~~~~~~Li~----------~y~~~g~~ 543 (919)
.+-++.. +-|..-++.+..+.... ++.-..-.+|..+.. .+... ...|..++. .|..-.++
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~-~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS-DPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc-cHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 9877642 22334445555554111 000000111111100 00000 011111111 11111122
Q ss_pred HHHHHHhccC----------------CCC------------Ch----------hhHHHHHHHHHHcCChhHHHHHHHHHH
Q 002460 544 VDAQSIFNDI----------------PAP------------DD----------VAWTTMISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 544 ~~A~~~f~~m----------------~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~ 585 (919)
..|.-.+... .+| |. .-.-.+.++.-+..+++.|++-+...+
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222111 001 00 113345666667778888888888887
Q ss_pred hcCCCCCHhHH-HHHHHHHcccccHHHHHHHHHHHHHcCCCCC------chhhcHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002460 586 LSGVVPDEFTF-AILVKASSCLTALEQGRQIHANLIKLDCSSD------PFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658 (919)
Q Consensus 586 ~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 658 (919)
+.. ...|| +..-.++...|...+........++.|...- ......+...|.+.++++.|...|.+...+-
T Consensus 252 el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 754 33444 4445566777766666555544444432210 0011124457888899999999999865221
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLV 737 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 737 (919)
.. -....+....++++...+...- +.|+.. -...-...+.+.|++..|+..|.+++.. -+-|...|+.-.
T Consensus 329 Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 329 RT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred cC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 10 1122334455666666665544 455543 2333366788899999999999998874 234588999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
-.|.+.|.+.+|++=.+.. ...|+. ..|.-=..+.....+++.|...+++.++++|++..+-..+.+.+......+..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ 479 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP 479 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence 9999999999998876664 445543 33433344555667999999999999999999988888888887765444444
Q ss_pred HHHH
Q 002460 816 TSAR 819 (919)
Q Consensus 816 ~~~~ 819 (919)
.++.
T Consensus 480 ee~~ 483 (539)
T KOG0548|consen 480 EETK 483 (539)
T ss_pred HHHH
Confidence 4444
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00038 Score=67.87 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=86.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 741 (919)
-.+-..+...|+.+.+..+..+.... .| |......+.......|++.+|...|.+... .-+||.+.|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33444555556655555555554321 22 222333355555566666666666666654 34445666666666666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 742 RAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 742 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
+.|++++|..-|.+. .+.| ++.+.+.|...+...||.+.|+.++..+....+.|+.+-..|+-+....|+.++|..+-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666555443 3333 34455566666666666666666666666666666666666666666666666665544
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=9.5e-06 Score=54.12 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCc
Q 002460 120 ISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSR 159 (919)
Q Consensus 120 ~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~ 159 (919)
++||++|.+|++.| ++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~-----~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAG-----RVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCC-----CHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999 999999999999999999984
No 130
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.98 E-value=0.00071 Score=79.75 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=164.6
Q ss_pred CCH-hHHHHHHHHHhccCchHHHHHHHHHHHHh-CCC---CChhHHHHHHHHHHHcCCHHHHHHHhccCCCC-C-hhhHH
Q 002460 490 LDE-ITIATAVKACGCLLMLKQGKQMHAYAMKS-GFE---LDLCVSSGILDMYVKCGAMVDAQSIFNDIPAP-D-DVAWT 562 (919)
Q Consensus 490 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~ 562 (919)
||. .-|...+.-....++++.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 34556666667777888888887777653 221 11356777777777778888888888887752 2 34678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCC-CCchhhcHHHHHHHHc
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCS-SDPFVGISLVDMYAKC 641 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~ 641 (919)
.|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++.+.-.. -.+....-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888999999999999999999876 4455567778888888888888888888887775332 1334445567778899
Q ss_pred CCHHHHHHHHHhCC---CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHH
Q 002460 642 GNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVS 711 (919)
Q Consensus 642 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 711 (919)
|+.+.+..+|+... .+....|+..|..-.++|+.+.+..+|++....++.|-.. .|...|..-...|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999887 3467899999999999999999999999999998888543 5666666555555543
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=9.7e-06 Score=53.67 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=32.2
Q ss_pred ceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 002460 225 VVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCP 258 (919)
Q Consensus 225 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (919)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=9e-05 Score=79.45 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=94.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 002460 698 IGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ 775 (919)
Q Consensus 698 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 775 (919)
.+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666677888888888887664 244 3445677777777778888887775 3333 566677677778889
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
++.+.|..+++++.++.|++-.+|..|+.+|...|+|++|....+.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888755
No 133
>PLN02789 farnesyltranstransferase
Probab=97.96 E-value=0.00053 Score=72.27 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=135.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC--
Q 002460 637 MYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGLAQHG-NGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGL-- 709 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-- 709 (919)
.+.+.++.++|+.+.+.+... +..+|+.-...+...| ++++++..++++.+. .| +..+|..-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchh
Confidence 344567788888888887643 4557777777777777 689999999999985 45 34456655444555565
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 002460 710 VSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ---GD----TE 779 (919)
Q Consensus 710 ~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~ 779 (919)
.+++..+++.+.+ +.| +...|+....++.+.|++++|++.++++ ...| +...|+....+.... |. .+
T Consensus 124 ~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888875 345 5778888888899999999999999997 3344 677888877666544 22 35
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhc----CCcchHHHHHHHHHh
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAA----NQWDDVTSARGEMKR 824 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m~~ 824 (919)
.+....+++++++|+|..+|..+..++... ++..+|.+......+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 678888899999999999999999999883 455678777766544
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.00072 Score=79.30 Aligned_cols=234 Identities=9% Similarity=0.085 Sum_probs=153.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHcccccHHHHHHHHHHHHHcCCCCCchhhcHH
Q 002460 556 PDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILV-KASSCLTALEQGRQIHANLIKLDCSSDPFVGISL 634 (919)
Q Consensus 556 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 634 (919)
.+...|..|+..|...+++++|.++.++-++ ..|+...+.... ..+.+.+..+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 5677899999999999999999999997666 356665443322 244445554444433 13
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC--CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDM--RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 711 (919)
++...+..++.-...+.+.|.. .+..++-.+..+|-+.|+.++|..+|+++++. .| |....+.+...++.. +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHH
Confidence 3333333333333333333331 23346677888999999999999999999985 46 556788888888888 999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----------------------PFEASASMHRALL 769 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll 769 (919)
+|.+++.+.... |...+++.++.+++.++ ....-..+|--+-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999988887664 22333444444443333 1222233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCC
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKK 829 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 829 (919)
.-|...++++++..+++.+++.+|.|..+..-|+..|. +++.+-..+=+.++-.++..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 66777889999999999999999999999999998887 66655333333334445443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=1.5e-05 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.0
Q ss_pred cchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCC
Q 002460 297 VVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQY 330 (919)
Q Consensus 297 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (919)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00036 Score=64.07 Aligned_cols=114 Identities=10% Similarity=0.020 Sum_probs=91.1
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 002460 681 LFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF 758 (919)
Q Consensus 681 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~ 758 (919)
.+++.++ ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566665 46644 35666777888899999999999998763 2336788888999999999999999998876 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 759 EA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 759 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
.| +...|..+...+...|+.+.|...++++++++|+++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56778888888899999999999999999999987653
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00071 Score=65.32 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHhCCC--------CC-eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCH
Q 002460 641 CGNIEDAYILFKQMDM--------RN-TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV-LSACSYTGLV 710 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~--------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 710 (919)
..+.++..+++.++.. ++ -..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888888762 12 123455666777889999999999999886 3 654322111 2224567999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKL 788 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 788 (919)
++|.++++++.++ -+.|..+|--=+.++-.+|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999875 2345667777677777788888888877665 46678999999999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHhhcCCc---chHHHHHHHHH
Q 002460 789 MALEPFDSSAYVLLSNIFAAANQW---DDVTSARGEMK 823 (919)
Q Consensus 789 ~~~~p~~~~~~~~l~~~y~~~g~~---~~a~~~~~~m~ 823 (919)
+=+.|-++..+..|+.++...|-. +-|.+++.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999998877753 44555664443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00098 Score=70.69 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=103.4
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTET 780 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 780 (919)
.+...|..++|...++.+... .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 455678999999999998763 3345777778889999999999999999987 56776 6778888999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 781 GKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 781 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
|+..++....-+|+||..|..|+.+|...|+..+|...+.++...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888766543
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0038 Score=60.45 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeehHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 637 MYAKCGNIEDAYILFKQMDMRNTVLWNAM---LVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
+..-+|+.+.|...++++..+-+.++... ..-+-..|++++|+++++.+++.. +-|.+++.-=+...-..|+--+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 34445666666666666543222222221 122456789999999999999874 33667887777777778888899
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG---DTETGKWVAEKL 788 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~ 788 (919)
++-+....+ .+..|.+.|.-+.++|...|++++|.-.++++ -..| ++..+..+.......| |.+.|..+++++
T Consensus 140 Ik~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 998888887 46778999999999999999999999999997 3455 5566677777766665 788899999999
Q ss_pred HhhCCCCCchHH
Q 002460 789 MALEPFDSSAYV 800 (919)
Q Consensus 789 ~~~~p~~~~~~~ 800 (919)
++++|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999996655443
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=2.3e-05 Score=50.49 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=27.3
Q ss_pred eeHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 002460 226 VLWKVMLRAYAENGFGEEVFHLFVDLHRSGL 256 (919)
Q Consensus 226 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 256 (919)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0083 Score=58.66 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCH
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSY----TGLV 710 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~ 710 (919)
...|...|++++|++.......-+....| ...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34566666666666666653221222111 22334445566666666666552 233455544444332 2344
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
.+|.-+|++|.++ ..|+..+.+-....|...|++++|+.+++.++.
T Consensus 190 qdAfyifeE~s~k----------------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 190 QDAFYIFEELSEK----------------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhHHHHHHHHhcc----------------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555555555442 334444444444444555555555555555555
Q ss_pred hCCCCCchHHHHHHHHhhcCCcchH
Q 002460 791 LEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 791 ~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
.+|++|.+...+.-.-...|+-.++
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHH
Confidence 5555555555554444445554444
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.00018 Score=77.77 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
..+.+.|++++|+++++++ ...| +...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455667777777777665 3344 4456666666677777777788878888888887777777778888888888888
Q ss_pred HHHHHHHHhCCCCCCch-HHHHHHHHHHHHHH
Q 002460 816 TSARGEMKRKNVKKDPA-DLIFAKVEGLIKRI 846 (919)
Q Consensus 816 ~~~~~~m~~~~~~~~~~-~~i~~~l~~l~~~~ 846 (919)
...+++..+.. |+ .++...+.++...+
T Consensus 90 ~~~~~~al~l~----P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLA----PGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 77776555432 32 33444444444444
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.18 Score=57.87 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=86.5
Q ss_pred HHHHHHHHcccccHHHH---HHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee--eehHH-HHHH
Q 002460 596 FAILVKASSCLTALEQG---RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV--LWNAM-LVGL 669 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~l-i~~~ 669 (919)
.+.++..|-+.++.... .-+++.-.... +.+..+--.||..|+-.|-+..|.++|+.+..+++. |..-+ ..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 44566777777766532 22233222221 233334456788888889999999999988754332 22222 3344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHH---HHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYE---NFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~---~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
...|++..+...+++...- ..-+. .|--.+..||. .|.+.+..+ +-+++... .-.....+-+..++.+...++
T Consensus 518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence 5567777777766665541 01111 12222333333 344443333 22333221 111123344566777888888
Q ss_pred HHHHHHHHHhCCCCC
Q 002460 746 TKEAGELILSMPFEA 760 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p 760 (919)
.++-...+..|..+|
T Consensus 595 ~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP 609 (932)
T ss_pred HHHHHHHHhccccCc
Confidence 888888888886444
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00075 Score=72.50 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHH
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 711 (919)
+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.++. .| |......-...|...++.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHH
Confidence 45666667889999999999999888777778888898899999999999999874 45 4445555566788999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 002460 712 EAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMPFEA 760 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p 760 (919)
.|.++.+++.+ ..|+ ..+|..|+..|...|++++|+..++.+|+.|
T Consensus 252 lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 252 LALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999875 4675 6799999999999999999999999998554
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0017 Score=60.28 Aligned_cols=113 Identities=21% Similarity=0.165 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCC
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGR 745 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~ 745 (919)
.++...+...++++.+. .|+. .....+...+...|++++|...|+..... ...|. ......|..++...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 56666666666666664 2332 12333344566666666666666666654 22222 1233345555666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 746 TKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
+++|+..++..+..+ .+..+.....++...|+.++|+..+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665542221 223333444444555555555555444
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00026 Score=70.31 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=53.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 739 ALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
-+.+.+++++|+..+.++ .+.| |++.|..-..+|.+-|.++.|.+-.+.++.++|....+|-.|+.+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 344555666666666554 4444 44445555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCCCchHHHH
Q 002460 817 SARGEMKRKNVKKDPADLIF 836 (919)
Q Consensus 817 ~~~~~m~~~~~~~~~~~~i~ 836 (919)
+.| ++++..+|..+.|
T Consensus 170 ~ay----kKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 170 EAY----KKALELDPDNESY 185 (304)
T ss_pred HHH----HhhhccCCCcHHH
Confidence 655 2444555554444
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.63 E-value=0.00012 Score=57.94 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC-CcchHHHHHHHHHh
Q 002460 761 SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN-QWDDVTSARGEMKR 824 (919)
Q Consensus 761 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 824 (919)
++.+|..+...+...|++++|+..++++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999998876543
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0011 Score=61.69 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=92.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA----SMHRALLG 770 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~ 770 (919)
|..++.+. ..++.+.+...++.+..+++-.| .....-.+...+...|++++|...++.. ...|+. ..+..|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 47889999999999988644332 1344555778888999999999999987 223443 34555677
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.+...|++++|...++.. .-.+-.+..+.+++++|.+.|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788899999999999763 33444566788999999999999999999864
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00045 Score=58.33 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888875 3344 33567777777788899999999999999999988888889999999999
Q ss_pred CcchHHHHHHHHHh
Q 002460 811 QWDDVTSARGEMKR 824 (919)
Q Consensus 811 ~~~~a~~~~~~m~~ 824 (919)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888876553
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=5.3e-05 Score=48.78 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=27.9
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHHHHhhcC
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVNMIRSNV 328 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 328 (919)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.12 Score=54.33 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=81.6
Q ss_pred cHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHH
Q 002460 632 ISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 632 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 711 (919)
+.-|.-+...|+...|.++-.+..-||-.-|...+.+|+..+++++-.++... +-.++.|-..+.+|...|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888999998888888888899999999999998876665432 223477888888888899998
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
+|..+...+ .+.--+.+|.+.|.+.+|.+.--+.
T Consensus 255 eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888887653 1245677888899998887775543
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=6.4e-05 Score=62.23 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHH
Q 002460 743 AGRTKEAGELILSM-PFEA---SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSA 818 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 818 (919)
.|++++|+.+++++ ...| +...|..+..++...|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777665 2222 455666677777788888888888887 777777777777788888888888888888
Q ss_pred HHH
Q 002460 819 RGE 821 (919)
Q Consensus 819 ~~~ 821 (919)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.49 E-value=0.0011 Score=59.18 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFD---SSAYVLLSNIF 806 (919)
Q Consensus 735 ~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 806 (919)
.++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...+++++...|++ +.++..++.+|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555554443 11121 1233334444555555555555555555555543 23445555555
Q ss_pred hhcCCcchHHHHHHHHHhC
Q 002460 807 AAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 807 ~~~g~~~~a~~~~~~m~~~ 825 (919)
...|++++|...++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555544443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0016 Score=58.00 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALL 769 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll 769 (919)
++..+...+...|++++|.+.|+.+...+.-.| ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555566667777777777777765422111 1345556777777777888777777765 22232 44566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.++...|+.+.|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887665443
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.005 Score=60.12 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 002460 680 KLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFE 759 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~ 759 (919)
++.+.+.......|......-...|++.|++++|.+..+.. -+.+....=+..+.|..+++-|.+.+++|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455554434444444444455699999999999887652 34555556677788999999999999999655
Q ss_pred CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 002460 760 ASASMHRALLGACRVQ----GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 827 (919)
.+..+...|..++.+. +.+..|-.+++.+-+.-|..+......+.++...|+|++|..+++...++.-
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 5666777777766433 4688899999999997777888999999999999999999999998877653
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.022 Score=67.25 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.9
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002460 456 DLATWNAMIFGYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 456 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (919)
+...|..|+..|...+++++|.++.+...+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556788888888888888888888886655
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0024 Score=58.40 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=86.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcch
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 814 (919)
..-+-.+|++++|..+|+-+ -..| +...|..|...|...++++.|...+..+..++++||.++...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445789999999999876 2233 566788888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 815 VTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 815 a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
|...|+...++ .-..++.++...+.+.+++
T Consensus 124 A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 124 ARQCFELVNER----TEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHHHHhC----cchHHHHHHHHHHHHHHHc
Confidence 99999888763 1125566666666665553
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00024 Score=55.34 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566778888888888888888888888888888888888888888887776654
No 159
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.42 E-value=0.12 Score=53.54 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=151.8
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHH
Q 002460 570 DNGEEDLALSIYHQMRLSGVVPDEF--TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 570 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 647 (919)
-.|++++|.+-|+.|... |... -+..|.-.--+.|+.+.|.++-...-.... .-.-...+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 2111 122233333456677777666655544321 1233556678888888888888
Q ss_pred HHHHHhCC-----CCCee--eehHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHH
Q 002460 648 YILFKQMD-----MRNTV--LWNAMLVGLA---QHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 648 ~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 716 (919)
+++.+.-. ++++. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 88887654 33332 1222333222 12345566666555555 678866 344456678999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 717 FHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 717 ~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
++.+- ..+|.+..+...+ +.|.|+... +-+++. .++|| .....++..+....|++..|..-++.+...
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99995 4567776665444 345664332 222221 34564 455566677778889999999999999999
Q ss_pred CCCCCchHHHHHHHHhhc-CCcchHHHHHHHHH
Q 002460 792 EPFDSSAYVLLSNIFAAA-NQWDDVTSARGEMK 823 (919)
Q Consensus 792 ~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~ 823 (919)
.|. ..+|.+|+.+-... |+-.++.....+..
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 995 77899999997766 98888877665443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0042 Score=59.61 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=70.9
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD--SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFL 736 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 736 (919)
..+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455555666666666666666666665322221 234555555666666666666666665542 23 24444455
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 737 VDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
..+|...|+...+..-++.. ...++.|..+++++++++|++ |..+.+.+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55555555544443322211 012566778888888887765 5555566655554
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.0036 Score=70.66 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=26.6
Q ss_pred CCCeeeehHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChh-HHHHH
Q 002460 656 MRNTVLWNAMLVGLAQH-----GNGEETLKLFEDMKAHGVEPDSV-TFIGV 700 (919)
Q Consensus 656 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 700 (919)
..|..+|...+.+.... ++.++|..+|++.++ ..||.. .+..+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~l 382 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEK 382 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 34556666666664332 236688888998888 578754 34433
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0044 Score=62.34 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=91.0
Q ss_pred CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 727 EP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQ---GDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 727 ~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.| |.+.|-.|...|.+.|+.+.|..-|.+. .+.| ++.++..+..++... .+..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35 6899999999999999999999999887 4444 667777777776544 2578899999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 801 LLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 801 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
.|+-.+...|++.+|...++.|.+..-.-+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999887666665
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.0004 Score=54.69 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=44.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
...|+++.|...++++++.+|+++.+...|+.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999998864443
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00016 Score=47.29 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 785 AEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 785 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0021 Score=64.14 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCH
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRT 746 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~ 746 (919)
..+.+++++|+..|.+.++ +.| |.+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 3444555555555555555 344 23333334444555555555554444332 23333 34444444444444444
Q ss_pred HHHHHHHHhC-CCCCC
Q 002460 747 KEAGELILSM-PFEAS 761 (919)
Q Consensus 747 ~eA~~~~~~m-~~~p~ 761 (919)
++|++.|++. .+.|+
T Consensus 166 ~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHhhhccCCC
Confidence 4444444443 34443
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0018 Score=61.92 Aligned_cols=92 Identities=11% Similarity=-0.043 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.++|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888776 23232 3478888888999999999999999999999999999999999
Q ss_pred HHh-------hcCCcchHHHHHHH
Q 002460 805 IFA-------AANQWDDVTSARGE 821 (919)
Q Consensus 805 ~y~-------~~g~~~~a~~~~~~ 821 (919)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 998 77888766665543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0023 Score=61.44 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
...|..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334555666666667777777766654 22221 3567777778888899999999999999999999888889999
Q ss_pred HHhhcCCc
Q 002460 805 IFAAANQW 812 (919)
Q Consensus 805 ~y~~~g~~ 812 (919)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 99887773
No 168
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.39 Score=51.03 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 748 EAGELILSMPFEA----SASMHRALLGA--CRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 748 eA~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+-+.++++.++.| +..+-+.|..| ...+|++.++.-...-+.++.| .+.+|.++|-......++++|.+++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445666666555 34566777776 4788999999999999999999 89999999999999999999999995
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.007 Score=62.74 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=122.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChhH------------
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLS--ACSYTGLVSEAYENFHLMREKYGIEPEVEH------------ 732 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 732 (919)
.++...|++++|.+.--..++. .++. .+..++. ++-..++.+.|...|++.. .+.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 3566778888888877766653 2321 1222222 3445677788888887764 34454221
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 002460 733 -YSFLVDALGRAGRTKEAGELILSM-PFEA-----SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNI 805 (919)
Q Consensus 733 -y~~li~~~~r~g~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 805 (919)
+..=.+-..+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+.++|..--+.+++++|.-..+|..-++.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223456889999999999886 4444 455666666677888999999999999999999989999999999
Q ss_pred HhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHhCCcccC
Q 002460 806 FAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKEGGYVPD 854 (919)
Q Consensus 806 y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~ 854 (919)
|...++|++|.+-++...+.... .+|...|.+....+++..-++.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s----~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD----CEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHhhhhhH
Confidence 99999999999998876654333 3455566666655655444333
No 170
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0013 Score=55.19 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHh
Q 002460 228 WKVMLRAYAENGFGEEVFHLFVDLHRSGL-CPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSG 306 (919)
Q Consensus 228 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~ 306 (919)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++.... .
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-----------------------------~ 78 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-----------------------------S 78 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-----------------------------c
Confidence 34456677777999999999999999999 89999999998887765531 1
Q ss_pred hhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcC
Q 002460 307 YLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG 344 (919)
Q Consensus 307 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 344 (919)
..-.++.-+.+.++++|...+++|+..||+.++..+.+
T Consensus 79 ~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 79 EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 12223455678899999999999999999999987654
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.00083 Score=52.30 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 736 LVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999987 5556 556888888899999999999999999999999875
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.00087 Score=53.64 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999988777554
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.0046 Score=66.89 Aligned_cols=103 Identities=19% Similarity=0.083 Sum_probs=73.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTE 779 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 779 (919)
.+...|++++|+++|+.+.+ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34556777777777777764 234 3566667777777778888887777775 4445 4566777777888889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 808 (919)
.|+..++++++++|+++.....+..+...
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999888877766555443
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.0078 Score=62.70 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=101.5
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA-CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
+|-.++....+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57778888888888999999999998542 2244455554444 44467777899999999985 44567778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 740 LGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--..+|+.+....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999986 32333 359999999999999999999999999999987443
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.28 Score=51.68 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc
Q 002460 529 VSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA 608 (919)
Q Consensus 529 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 608 (919)
+.+..+.-+...|+...|.++-.+..-||-.-|-..|.+|+..+++++-.++-.. +-.++.|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999888889999999999999999999887765432 2234788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 88888777651 224578899999999988766
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.14 E-value=0.0047 Score=51.87 Aligned_cols=61 Identities=26% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 333444444444444444444432 1112 223444455555555555556555555555544
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.07 Score=49.30 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=75.7
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHH
Q 002460 690 VEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIE-PEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA---SASM 764 (919)
Q Consensus 690 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p---~~~~ 764 (919)
+-|...--..|..+....|+..||...|++... |+- -|....-.+.++...-++..+|...++++ ...| ++..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555566666667777777777666655 333 34555555566666666677776666664 2112 1222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 765 HRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 765 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.-.+...+...|..+.|+..++.++..-| ++..-...+..++++|+.++|..-+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 33445556666777777777777777666 45555566666777776666654443
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.03 Score=51.62 Aligned_cols=109 Identities=24% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 718 HLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM---PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 718 ~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
.+..++..+.|++.+--.|...+.+.|+..||...+++. ++.-|+.+.-.+..+...-++...|...++++.+.+|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 334444577899999999999999999999999999986 46668888889999999999999999999999999885
Q ss_pred --CCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 795 --DSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 795 --~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.|....+++.+|...|++.+|...++-..+.-
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 57788899999999999999999988776553
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.02 E-value=0.32 Score=50.46 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=173.0
Q ss_pred hHHHHHHHHHH--cCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHc--ccccHHHHHHHHHHHHHcCCCCCchhh--cH
Q 002460 560 AWTTMISGCVD--NGEEDLALSIYHQMRLSGVVPDEFTFAILVKASS--CLTALEQGRQIHANLIKLDCSSDPFVG--IS 633 (919)
Q Consensus 560 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 633 (919)
-|.+|-.|+.. .|+...|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+-|... |..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34555555544 45666666655554322 4456666666766544 469999999999988762 332222 12
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--C-CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHhc-
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDM--R-NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG-VEPDSV--TFIGVLSACSY- 706 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 706 (919)
|.-.--+.|..+.|...-++.-. | -.-.|.+.+...+..|+++.|+++.+.-.+.. +.+|.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333467888888888777653 2 34478889999999999999999999876643 456654 23334443211
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002460 707 --TGLVSEAYENFHLMREKYGIEPEVE-HYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 707 --~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
..+...|...- .+...+.|+.. .-..-..+|.+.|++.++-.+++.+ +.+|.+.+|..+. ..+.|+.....
T Consensus 240 ~ldadp~~Ar~~A---~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDA---LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHH---HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHH
Confidence 12344444332 23346788743 3334457889999999999999998 7788888876654 34667654433
Q ss_pred -HHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHH
Q 002460 783 -WVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKV 839 (919)
Q Consensus 783 -~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l 839 (919)
+-++++.++.|+|......++..-...|++..|..--+.. ....|.+.+|-.|
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa----~r~~pres~~lLl 368 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA----AREAPRESAYLLL 368 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH----hhhCchhhHHHHH
Confidence 4466778899999999999999988999988776544322 2334555555444
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.95 E-value=0.013 Score=66.29 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCCChhHHHHHHHHHhc--cC---CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHh
Q 002460 690 VEPDSVTFIGVLSACSY--TG---LVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRA--------GRTKEAGELILS 755 (919)
Q Consensus 690 ~~p~~~t~~~ll~a~~~--~g---~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~--------g~~~eA~~~~~~ 755 (919)
...|...|...+.+... .+ ..+.|..+|++..+ ..|+ ...|..+..++... +++.++.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34566788888887543 33 36789999999875 5787 45555544433221 234455555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 756 M---P-FEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 756 m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
. + ...++.++.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 2 233556777777777778999999999999999999 588999999999999999999999876543
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.028 Score=53.63 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 002460 660 VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD--SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFL 736 (919)
Q Consensus 660 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 736 (919)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++..... .|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHH
Confidence 3556666667777777777777777766422221 235666667777777777777777776542 332 4445555
Q ss_pred HHHHh
Q 002460 737 VDALG 741 (919)
Q Consensus 737 i~~~~ 741 (919)
..++.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.94 E-value=0.003 Score=60.19 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=86.4
Q ss_pred HHHHhcC--CCCCceeHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHHHHH
Q 002460 214 KFLFDGM--QERDVVLWKVMLRAYAEN-----GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQAYAI 286 (919)
Q Consensus 214 ~~~f~~m--~~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 286 (919)
...|+.. ..+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+.... .
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv-p-------- 104 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV-P-------- 104 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc-c--------
Confidence 4455554 446677777777777653 67777888889999999999999999998887653221 0
Q ss_pred HHhhhcCCCCcchhhhHhHhhh--hcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCC-hhHHHHHHHHHHH
Q 002460 287 KLLLYNNNSNVVLWNKKLSGYL--QVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDN-LNLGQQIHGTTLK 360 (919)
Q Consensus 287 ~~~~~~~~~~~~~~n~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~ 360 (919)
.+++++-. .-.+-+-|++++++|...|+.||..|+..+++.+++.+. .....++.-+|.+
T Consensus 105 --------------~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 105 --------------RNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred --------------ccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111111 123457789999999999999999999999999998775 3444444444443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.90 E-value=0.052 Score=56.80 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHhc
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQH-GNGEETLKLFEDMKAH----GVEPD--SVTFIGVLSACSY 706 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~ 706 (919)
.++.|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .+. ..++..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455666666665555433 33444444 5666666666655442 1 111 1133444444555
Q ss_pred cCCHHHHHHHHHHhHH
Q 002460 707 TGLVSEAYENFHLMRE 722 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~ 722 (919)
.|++++|.++|++...
T Consensus 168 l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAK 183 (282)
T ss_dssp TT-HHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.88 E-value=0.0012 Score=51.92 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 743 AGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 743 ~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.|++++|+++++++ ...| +..++..+..++...|++++|+..++++...+|+++..+.++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44455555554443 2222 334444444445555555555555555555555444444333
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.82 E-value=0.0071 Score=65.42 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=86.1
Q ss_pred CcHhHHHHHHHHHHhcCChhHHHHHHhcCCC-C-----CceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHH
Q 002460 192 WDEFVSGALVNIYSKFGKIREAKFLFDGMQE-R-----DVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQC 265 (919)
Q Consensus 192 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~-----~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (919)
.+......+++......+++++..++-+... | -..|..++|+.|.+.|..++++++++.=...|+-||.+|++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444455556666666666777766655443 2 123456888899999999999999988888888888777666
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHhhhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCC
Q 002460 266 VLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGT 345 (919)
Q Consensus 266 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 345 (919)
+ |..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 L-------------------------------------md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 L-------------------------------------MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred H-------------------------------------HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6 888888888999999988888887777788887777777654
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.0092 Score=60.95 Aligned_cols=88 Identities=8% Similarity=0.041 Sum_probs=43.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHhh
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEAS----ASMHRALLGACRVQGDTETGKWVAEKLMALEPFD---SSAYVLLSNIFAA 808 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~ 808 (919)
+..+.+.|++++|...|+.. ...|+ +..+.-+..++...|+++.|...++++++..|++ +.++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33333445555555444443 11221 1233344445555566666666666666555543 3334444555666
Q ss_pred cCCcchHHHHHHHHHh
Q 002460 809 ANQWDDVTSARGEMKR 824 (919)
Q Consensus 809 ~g~~~~a~~~~~~m~~ 824 (919)
.|++++|.++++...+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666555443
No 187
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.77 E-value=0.0038 Score=51.54 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 002460 672 HGNGEETLKLFEDMKAHGVE-PDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA 749 (919)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...|. ......+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777774221 13334444677777777777777777662 22232 23333446667777777777
Q ss_pred HHHHHh
Q 002460 750 GELILS 755 (919)
Q Consensus 750 ~~~~~~ 755 (919)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 188
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.021 Score=53.08 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=72.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEP--EVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETG 781 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 781 (919)
....|+.+.+...++.+..-|.-.+ +... ..........++++- ...+..++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456777777777777766442221 1111 111222222222221 23455677778899999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH-----hCCCCCCch
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK-----RKNVKKDPA 832 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~~~~~~~~ 832 (919)
...+++++..+|-|...|..|..+|...|+..+|.++++.++ +.|+.|.|.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 999999999999999999999999999999999999987764 357765543
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.079 Score=51.74 Aligned_cols=168 Identities=14% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHhccCC--CCChh--------hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHH
Q 002460 530 SSGILDMYVKCGAMVDAQSIFNDIP--APDDV--------AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAIL 599 (919)
Q Consensus 530 ~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 599 (919)
+++|...|.-...+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++.++...+.+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 4566666665555555555555433 22333 3356777777788888999999999998777788888889
Q ss_pred HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcH-----HHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHh
Q 002460 600 VKASSCLTALEQGRQIHANLIKLDCSSDPFVGIS-----LVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQ 671 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 671 (919)
.+.-.+.|+.+.|...++...+..-..+....+. ....|.-+.++.+|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999998877544444444433 33456667889999999988874 466677776666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDSVTFIG 699 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 699 (919)
.|+..+|++..+.|.+ ..|...+-.+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 8999999999999998 4565554443
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.70 E-value=0.024 Score=61.40 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=84.6
Q ss_pred CCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCC----CChhh
Q 002460 487 GERLDEITIATAVKACGCLLMLKQGKQMHAYAMKS--GFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA----PDDVA 560 (919)
Q Consensus 487 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~ 560 (919)
+.+.+...+..+++.+....+++.++.++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777888888888888888888777766654 2223344556777777777777777777765443 67777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccc
Q 002460 561 WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL 606 (919)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 606 (919)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777776666767766666655544
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.64 E-value=0.0049 Score=48.55 Aligned_cols=65 Identities=25% Similarity=0.142 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 002460 729 EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG-DTETGKWVAEKLMALEP 793 (919)
Q Consensus 729 ~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 793 (919)
+...|..+...+.+.|++++|+..|++. ...| ++.+|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456778888888899999999888876 4455 4567888888888989 79999999999999988
No 192
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=1.8 Score=49.16 Aligned_cols=108 Identities=24% Similarity=0.242 Sum_probs=84.3
Q ss_pred cHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHH
Q 002460 632 ISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVS 711 (919)
Q Consensus 632 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 711 (919)
+--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+. .++-|.-...+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3344556678999999999999999999999999999999999887666554432 2566777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002460 712 EAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~ 755 (919)
||.+++.+... +.-.+.+|.+.|++.+|.++--+
T Consensus 762 EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99998765521 11568899999999999887644
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.62 E-value=0.026 Score=51.54 Aligned_cols=89 Identities=8% Similarity=0.008 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccC
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTG 708 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 708 (919)
.+...+...|++++|.++|+-... -+..-|-.|..++...|++++|+..|..... +.| |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 355666778888888888887653 3556778888888888888888888888887 455 4457777888888888
Q ss_pred CHHHHHHHHHHhHHh
Q 002460 709 LVSEAYENFHLMREK 723 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~ 723 (919)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888887764
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.53 E-value=0.0039 Score=43.84 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
.+|..+..++...|++++|+.+++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888899999999999999999999999999999888764
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.0084 Score=64.13 Aligned_cols=63 Identities=16% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA---YVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+..|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554432 55555555555555555555444443
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.50 E-value=0.028 Score=47.51 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCC-CCCHhHHHHHHHHHcccc--------cHHHHHHHHHHHHHcCCCCCchhhc
Q 002460 562 TTMISGCVDNGEEDLALSIYHQMRLSGV-VPDEFTFAILVKASSCLT--------ALEQGRQIHANLIKLDCSSDPFVGI 632 (919)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 632 (919)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+...+++.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877653 3445677889999999999999999
Q ss_pred HHHHHHHH
Q 002460 633 SLVDMYAK 640 (919)
Q Consensus 633 ~li~~y~~ 640 (919)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.49 E-value=2.5 Score=49.09 Aligned_cols=419 Identities=13% Similarity=0.081 Sum_probs=208.7
Q ss_pred CcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchHHhHHHH
Q 002460 296 NVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLIN 375 (919)
Q Consensus 296 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 375 (919)
|..|...+-..|...|+.++|..++++.... -|+..-...+..++.+.+++..-+++-=++.+ .+.-+...+-+.++
T Consensus 76 D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~S 152 (932)
T KOG2053|consen 76 DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVIS 152 (932)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHH
Confidence 4445555577788888999999999887654 46677777778888888777665544333333 23334455555555
Q ss_pred HhHhcCccCCCCCchhhHHHHHHhhcCCccchhhhHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc---
Q 002460 376 MYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKND-TVADSFVSTALIDVYCRNGSMAEAEYLFEN--- 451 (919)
Q Consensus 376 ~~~k~g~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~~f~~--- 451 (919)
.+...-.- |+.... .-.+..++.+.+.+++.+ ...+..-.-.-...+...|++++|..++..
T Consensus 153 lilqs~~~----~~~~~~----------~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la 218 (932)
T KOG2053|consen 153 LILQSIFS----ENELLD----------PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA 218 (932)
T ss_pred HHHHhccC----Cccccc----------chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 55443311 110000 112345666677776655 333333333344556678899999998843
Q ss_pred --CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhc------------cCchHHHHH
Q 002460 452 --KDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVK----ACGC------------LLMLKQGKQ 513 (919)
Q Consensus 452 --~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~------------~~~~~~a~~ 513 (919)
...-+...-|--+.-+...+++.+..++-.++...| +|. |...+. ..-. .+.++...+
T Consensus 219 ~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~e 294 (932)
T KOG2053|consen 219 EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIE 294 (932)
T ss_pred HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHH
Confidence 233344445556677788888988888888888776 332 222221 1111 111111111
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHH---HHcCCHHHHHHHh-c---cCCC--CChhh---------HHHHHHHHHHcCCh-
Q 002460 514 MHAYAMKSGFELDLCVSSGILDMY---VKCGAMVDAQSIF-N---DIPA--PDDVA---------WTTMISGCVDNGEE- 574 (919)
Q Consensus 514 ~~~~~~~~g~~~~~~~~~~Li~~y---~~~g~~~~A~~~f-~---~m~~--~~~~~---------~~~li~~~~~~g~~- 574 (919)
.....+... ....+-+-+..+ -.-|+.+++...| + .++. .|... ...++.++....+.
T Consensus 295 k~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~ 371 (932)
T KOG2053|consen 295 KAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDS 371 (932)
T ss_pred HHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcc
Confidence 111111110 111222333333 3447777764433 2 2221 12222 23344444333222
Q ss_pred hHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc-----HHHHHHHHHHH---HHc------CCCCCch---------hh
Q 002460 575 DLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA-----LEQGRQIHANL---IKL------DCSSDPF---------VG 631 (919)
Q Consensus 575 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~---~~~------~~~~~~~---------~~ 631 (919)
.++.+.+.+- ..++..-...|. -+.-..++... ... ++.|+.. +-
T Consensus 372 s~~~k~l~~h------------~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 372 SGDEKVLQQH------------LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred hhhHHHHHHH------------HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 1222222111 001110001110 01111111110 111 2222222 23
Q ss_pred cHHHHHHHHcCCHH---HHHHHHHhCCCCCee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 632 ISLVDMYAKCGNIE---DAYILFKQMDMRNTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 632 ~~li~~y~~~g~~~---~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
+.|++++-+.++.. +|+-+++.....+.. +=-.+|..|.-.|-...|.++|+.|--..|+-|...|.. ..-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 56788888887765 555566655544333 334577888888888888888888876667777665543 33445
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELI 753 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~ 753 (919)
..|++..+...++....-|+- --.++-.++..+| |.|.+.+..++.
T Consensus 519 t~g~~~~~s~~~~~~lkfy~~-~~kE~~eyI~~AY-r~g~ySkI~em~ 564 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLKFYDS-SLKETPEYIALAY-RRGAYSKIPEML 564 (932)
T ss_pred hcccchhHHHHHHHHHHHHhh-hhhhhHHHHHHHH-HcCchhhhHHHH
Confidence 567777777776665442110 1122233333333 566666555543
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.0086 Score=47.77 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=52.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.+|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678899999999999887 4555 456777777788889999999999999999999877665543
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.014 Score=60.37 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHL---MREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-------PF-EASAS 763 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-------~~-~p~~~ 763 (919)
.|..|.+.|.-.|+++.|+...+. +.+.||-... ...+..+.+.+.-.|+++.|.+.++.. +. .-.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677888888876543 2233454432 556778888888889999998888764 11 11334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALE------PFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
...+|.++|..-.+++.|+.+..+-+.+. -....++..|+++|...|..++|....+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56678888888888888888776655432 1235578999999999999999987765544
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.34 E-value=0.27 Score=52.31 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=94.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCC---Ceee----ehHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMR---NTVL----WNAMLVGLAQ---HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA 703 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 703 (919)
|+-.|....+++.-.++.+.+... +... --...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344566666777777777766632 1111 1122334445 77888888888886665556777777766665
Q ss_pred Hhc---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CCCC--
Q 002460 704 CSY---------TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTK----EAGELI---LS-M----PFEA-- 760 (919)
Q Consensus 704 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~----eA~~~~---~~-m----~~~p-- 760 (919)
|-. ....++|+..|.+. +.+.|+..+--.++-++..+|... +..++. .. . ...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 421 22467788777766 456676544434444444444322 222222 11 1 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 761 SASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 761 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+.-...+++.++.-.||.+.|..++++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3344567888999999999999999999998765
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.32 E-value=0.064 Score=47.19 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHh
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALG 741 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~ 741 (919)
+..++-..|+.++|+.+|++.++.|+.... ..+..+.+.+...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677888999999999999888866643 3677788888899999999999988877532211 1222233445677
Q ss_pred hcCCHHHHHHHHHh
Q 002460 742 RAGRTKEAGELILS 755 (919)
Q Consensus 742 r~g~~~eA~~~~~~ 755 (919)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877644
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.22 E-value=0.57 Score=51.70 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=87.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 002460 414 HVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI 493 (919)
Q Consensus 414 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 493 (919)
+..+.++|-.|+... +.+.++-.|++.+|-++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 345566777777654 34556667888999888864 35556666666665421
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCC
Q 002460 494 TIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGE 573 (919)
Q Consensus 494 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 573 (919)
-...-+...|+.++-+.+...-... .-++.--.+-..++...|+.++|..+. ..+|.
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 0111222233333333222211110 001111122344455566666555442 23333
Q ss_pred hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 574 EDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 574 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
.+-++++-+++-. .+..++..+..-+-+...+..|-+||..+-.. ..++++....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 4444444333321 12233333333344445555566666554322 1366677777777777777777
Q ss_pred CCC
Q 002460 654 MDM 656 (919)
Q Consensus 654 ~~~ 656 (919)
.++
T Consensus 799 hPe 801 (1081)
T KOG1538|consen 799 HPE 801 (1081)
T ss_pred Ccc
Confidence 664
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.22 E-value=0.031 Score=53.50 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=75.1
Q ss_pred HHHHhC--CCCCeeeehHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-------------
Q 002460 649 ILFKQM--DMRNTVLWNAMLVGLAQ-----HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTG------------- 708 (919)
Q Consensus 649 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------- 708 (919)
..|+.. ..+|..+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566667777776664 4677778888899999999999999999999865421
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 709 ---LVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 709 ---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.-+-|++++++|.. +|+.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 24679999999988 5999999999999999998874
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.21 E-value=0.054 Score=47.67 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=49.4
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHhhc
Q 002460 738 DALGRAGRTKEAGELILSM---PFEAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPF---DSSAYVLLSNIFAAA 809 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~ 809 (919)
.++-..|+.++|+.++++. ..... ...+-.+.++++..|++++|..++++.++-.|+ +......++-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444556666666666553 11111 224445566667777777777777777776666 555556666677777
Q ss_pred CCcchHHHHH
Q 002460 810 NQWDDVTSAR 819 (919)
Q Consensus 810 g~~~~a~~~~ 819 (919)
|++++|.+.+
T Consensus 89 gr~~eAl~~~ 98 (120)
T PF12688_consen 89 GRPKEALEWL 98 (120)
T ss_pred CCHHHHHHHH
Confidence 7777777654
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.19 E-value=0.13 Score=53.80 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C--CHHH
Q 002460 696 TFIGVLSACSYT-GLVSEAYENFHLMREKYGIEPE----VEHYSFLVDALGRAGRTKEAGELILSMP---FE-A--SASM 764 (919)
Q Consensus 696 t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m~---~~-p--~~~~ 764 (919)
.+..+...|... |++++|.++|+...+-|..... ...+.-+..++.+.|++++|.+++++.. .. + ...+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999988775433332 4566778889999999999999998761 11 1 1122
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 765 HRALLG---ACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 765 ~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
-..++. .+...||...|...+++..+.+|.-..+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 222222 3455689999999999999999865443
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.16 E-value=1.4 Score=48.93 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA 713 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 713 (919)
-.+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 455666677777766552 334444444444444322 1233444444444455555666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH----HHH-------HHHHHHHhcCCHHHH
Q 002460 714 YENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP-FEASAS----MHR-------ALLGACRVQGDTETG 781 (919)
Q Consensus 714 ~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~-~~p~~~----~~~-------~ll~~~~~~g~~~~a 781 (919)
.++|.+|-+ ...++++....++++||..+-++.| +.||.. -|- -.-.++.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 677766643 2346677777777777777777764 344432 111 112345566777777
Q ss_pred HHHHHHHHh
Q 002460 782 KWVAEKLMA 790 (919)
Q Consensus 782 ~~~~~~~~~ 790 (919)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 777777653
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=2 Score=48.08 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=117.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC-----CeeeehHHHHHHHhcCCHHHHHHH
Q 002460 607 TALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR-----NTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
|.+++|++++-.+-++.+ -|.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666544444332 466777888888777777664422 134678888888777778888777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 002460 682 FEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEAS 761 (919)
Q Consensus 682 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~ 761 (919)
|..-... ...+.++.+..++++-..+-.. ++-+....-.|.+++.+.|.-++|.+.+-+-.. |.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pk 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PK 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cH
Confidence 7653221 1245555555555555444333 334566677788899999999999888776642 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKL-------------MALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~-------------~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
+.+..|...+++.+|.+++++. -++-. .....--...+.++|+.-+|.++...|.++..+
T Consensus 883 -----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~--~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 883 -----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA--DANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh--hcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 2344566666666666555432 11111 112233445688899999999998888765444
Q ss_pred C
Q 002460 829 K 829 (919)
Q Consensus 829 ~ 829 (919)
|
T Consensus 956 K 956 (1189)
T KOG2041|consen 956 K 956 (1189)
T ss_pred c
Confidence 3
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.13 E-value=0.037 Score=57.71 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 002460 695 VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR-AGRTKEAGELILSM--PFEASASMHRALLGA 771 (919)
Q Consensus 695 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 771 (919)
.+|..++..+.+.+..+.|..+|....+. -.-+...|.....+-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888899999999999753 22234555555555334 56666699999986 355678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 772 CRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
....|+.+.|+.++++++..-|.+. ..|....+.-...|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876554 47888888888999999999999888875
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.10 E-value=1.7 Score=43.33 Aligned_cols=191 Identities=23% Similarity=0.150 Sum_probs=107.8
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH-
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD-----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLS- 702 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 702 (919)
.........+...+.+..+...+.... ......+..+...+...+++..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344445555566666666665555543 12333444555555566666666666666665322221 11222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP----EVEHYSFLVDALGRAGRTKEAGELILSM-PFEAS--ASMHRALLGACRVQ 775 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~ 775 (919)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56667777777777766633 222 2333333344455667777777776665 23333 45566666666777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++.+.|...+.++.+..|.....+..++..+...|.++++...+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777655556666666666666677666655443
No 210
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.06 E-value=0.46 Score=51.37 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 671 QHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+..+.+.-++.-++.++ +.||..+-..++ +--.+.-+.++.++|++..+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK 228 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH
Confidence 44455666666666666 567665543333 22334456677777766544
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.99 E-value=0.25 Score=50.17 Aligned_cols=171 Identities=9% Similarity=0.047 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--CCe-ee---ehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHh
Q 002460 634 LVDMYAKCGNIEDAYILFKQMDM--RNT-VL---WNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACS 705 (919)
Q Consensus 634 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 705 (919)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+. .-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 45556678888888888888764 222 11 223556778888888888888888874 5543 23444444433
Q ss_pred c--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 002460 706 Y--TG---------------L---VSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMH 765 (919)
Q Consensus 706 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~ 765 (919)
+ .+ + ..+|...|+.+.++ |-.+.-..+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 2 11 1 12333444444433 3333334444443333210000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDS---SAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.....-|.+.|++.-|..-++.+++--|+.+ .+...+.++|...|..++|..+.+...
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1233447778899999999999999887644 457788899999999999998876554
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.97 E-value=0.1 Score=53.42 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=64.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM----PFEA-SASMHRALLG 770 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~ 770 (919)
|...+......|++++|...|+.+.+.|.-.+- ...+-.+..+|...|++++|...|+++ |..| ....|..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444343334557777777777777665321111 245566777777777787777777765 2222 2344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
.+...|+.+.|...++++++..|+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677788999999999999998887543
No 213
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.94 E-value=3.4 Score=45.27 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcC---CHHHHHHHHHhCC----CCCeeeehHHHHHHHhcCCHHHHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCG---NIEDAYILFKQMD----MRNTVLWNAMLVGLAQHGNGEETLKLF 682 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 682 (919)
+++..+++..+..-...+..+|.++.+---..- +.+.....+++.. ..-..+|...++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555554433334444443332111111 1333444444443 233557888888888888889999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C--C
Q 002460 683 EDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-P--F 758 (919)
Q Consensus 683 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~--~ 758 (919)
.+..+.+..+ +.....+++.-+| .++.+-|.++|+.=..++|-. +.--.+.++-+.+-++-..|..+|++. + .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4456777777655 578899999999887765433 344456788888999999999999987 2 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHhhcCCcchHHHHHHH
Q 002460 759 EAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS----AYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 759 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.|+ ..+|..++.--..-||+..+..+-++....-|.+.. .-.++..-|.-.+.+..-..-++.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 343 469999999988999999999999888877663211 223444556555655544443333
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.89 E-value=3.1 Score=44.51 Aligned_cols=28 Identities=4% Similarity=0.091 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002460 458 ATWNAMIFGYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 458 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 485 (919)
.++..++...++.++..+|-+.+.-+..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4556666666777777666666655543
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=1.5 Score=46.27 Aligned_cols=20 Identities=20% Similarity=-0.120 Sum_probs=10.9
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 002460 567 GCVDNGEEDLALSIYHQMRL 586 (919)
Q Consensus 567 ~~~~~g~~~~A~~~~~~m~~ 586 (919)
++.-.|++++|.+.--..++
T Consensus 178 cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred hhhhcccchhHHHHHHHHHh
Confidence 44555666666655544443
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=95.83 E-value=0.099 Score=56.32 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=79.6
Q ss_pred eee--hHHHHHHHhcC-----CHHHHHHHHHHHHH-cCCCCChh-HHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 002460 660 VLW--NAMLVGLAQHG-----NGEETLKLFEDMKA-HGVEPDSV-TFIGVLSACSY---------TGLVSEAYENFHLMR 721 (919)
Q Consensus 660 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 721 (919)
..| ..++.|....- ..+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544321 35678888888872 22567654 44444433221 112233444444333
Q ss_pred HhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 722 EKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 722 ~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+ +.| |......+..++.-.|+++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|.-..+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 2 333 3455555555555556666666666665 344543 345555555555666666666666666666655444
Q ss_pred HHHHHH--HHhhcCCcchHHHHH
Q 002460 799 YVLLSN--IFAAANQWDDVTSAR 819 (919)
Q Consensus 799 ~~~l~~--~y~~~g~~~~a~~~~ 819 (919)
-++-.+ +|...+ .++|++++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 443332 344333 44455444
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.2 Score=44.99 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-HH--HHHHHHhhcC
Q 002460 739 ALGRAGRTKEAGELILSM----PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA-YV--LLSNIFAAAN 810 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~--~l~~~y~~~g 810 (919)
...+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.+++++|...+++.++++|.++.+ |. ..+-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345788888888888876 3333 23345567788999999999999999999999988764 33 2332232222
Q ss_pred CcchHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHhCCcccC
Q 002460 811 QWDDVTSARGEMKRKNVKKDPA--DLIFAKVEGLIKRIKEGGYVPD 854 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~~~~~~~--~~i~~~l~~l~~~~~~~g~~p~ 854 (919)
. ..+..+. +.+.+|+ ..-+..++++........|.+|
T Consensus 99 ~-----~~~~~~~--~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 99 E-----GSLQSFF--RSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred h-----hHHhhhc--ccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 1 2223333 5555665 5556666666665554455444
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.058 Score=56.57 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch-HHHHHHHHH
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA-DLIFAKVEG 841 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~-~~i~~~l~~ 841 (919)
..+..|...+.+.+++..|+....++++++|+|.-+...-+.+|...|+++.|...|+++.+ .+|. ++|...|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH----hCCCcHHHHHHHHH
Confidence 34556666677888999999999999999999999999999999999999999999977764 3444 566666666
Q ss_pred HHHHHH
Q 002460 842 LIKRIK 847 (919)
Q Consensus 842 l~~~~~ 847 (919)
+.++++
T Consensus 334 l~~k~~ 339 (397)
T KOG0543|consen 334 LKQKIR 339 (397)
T ss_pred HHHHHH
Confidence 665554
No 219
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.45 E-value=1.9 Score=43.72 Aligned_cols=59 Identities=12% Similarity=-0.016 Sum_probs=29.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH--HHHHHHHHcccccHHHHHHHHHHHHHc
Q 002460 564 MISGCVDNGEEDLALSIYHQMRLSGVVPDEFT--FAILVKASSCLTALEQGRQIHANLIKL 622 (919)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~ 622 (919)
....+.+.|++++|++.|+++...-..+.... ...+..++-+.+++++|...++..++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34445566777777777777665422221111 122334444555555555555555443
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.34 E-value=0.07 Score=55.36 Aligned_cols=128 Identities=13% Similarity=-0.015 Sum_probs=89.2
Q ss_pred HHHHHHHHHcccccHHHHHHHHHHHHH----cCCC-CCchhhcHHHHHHHHcCCHHHHHHHHHhCC-------CC--Cee
Q 002460 595 TFAILVKASSCLTALEQGRQIHANLIK----LDCS-SDPFVGISLVDMYAKCGNIEDAYILFKQMD-------MR--NTV 660 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~ 660 (919)
.|..+-..|.-.|+++.|...|+.-.. .|-. .....+..|.++|.-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666677899999988865432 2322 223456668888999999999999888653 23 234
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAH----G-VEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+.-+|...|.-..++++|+.++.+=+.- + ..-....+-+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888999999988765431 1 112345788899999999999999887765544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.25 E-value=0.024 Score=45.85 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMAL----EPF---DSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
++..+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666667777777777666653 111 13357788888888888888888876543
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.22 E-value=0.1 Score=51.44 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=89.9
Q ss_pred hHHHHHHhcCC--CCCceeHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhhhcchhHHHHHH
Q 002460 211 REAKFLFDGMQ--ERDVVLWKVMLRAYAEN-----GFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQA 283 (919)
Q Consensus 211 ~~A~~~f~~m~--~~~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 283 (919)
-.-++.|...+ ++|-.+|-+++..|... +..+-....++.|.+.|+.-|..+|..+|+.+-+....-
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP------ 124 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP------ 124 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc------
Confidence 34456677766 68888898888888764 567777788899999999999999999988876654211
Q ss_pred HHHHHhhhcCCCCcchhhhHhHhhhhc-CChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCCh-hHHHHHHHHHH
Q 002460 284 YAIKLLLYNNNSNVVLWNKKLSGYLQV-GDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNL-NLGQQIHGTTL 359 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~-~~a~~~~~~~~ 359 (919)
-|.+=..+..- .+-+=+++++++|...|+.||..+-..|++++++.+-. ....++.-.|-
T Consensus 125 ----------------~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 125 ----------------QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ----------------HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 11111111111 23345789999999999999999999999999987743 33444444443
No 223
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.22 E-value=2 Score=51.48 Aligned_cols=158 Identities=20% Similarity=0.146 Sum_probs=97.5
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHH
Q 002460 541 GAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLI 620 (919)
Q Consensus 541 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 620 (919)
+++++|..-+.++. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555555443 223334444445566666666654 5677776666555433 122
Q ss_pred HcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH--HH
Q 002460 621 KLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVT--FI 698 (919)
Q Consensus 621 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 698 (919)
+.. .++--.-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 222345578899999998655 5567899999998888743 223332 24
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP 757 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~ 757 (919)
.|.+-+...++.-+|-++..+...+ +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5667788888888888777666443 3345667788888889888776653
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.76 Score=46.80 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH----HHhhcCCHH
Q 002460 672 HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVD----ALGRAGRTK 747 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~----~~~r~g~~~ 747 (919)
.|+..+|-..++++++. .+.|-..+.-.=.+|...|+.+.-...++++.. ...|+...|..+=. .+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555556665553 222444444444555556665555555555543 23344433333222 233556666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 748 EAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 748 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
+|++.-++. .+.| |.-...++.......|+..++.+..++--..-.+ -+..|.+.+-.|...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665554 3333 2223333444444555555555554433221110 122355555556666666777666643
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.18 E-value=0.034 Score=45.00 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSM-------P-FEAS-ASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444455555555555555544443 1 1122 345566666667777777777777776654
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.14 E-value=3.9 Score=40.71 Aligned_cols=195 Identities=19% Similarity=0.128 Sum_probs=123.9
Q ss_pred HHHHHHHHcccccHHHHHHHHHHHHHc-CCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC--Ce-eeehHHHH-HHH
Q 002460 596 FAILVKASSCLTALEQGRQIHANLIKL-DCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR--NT-VLWNAMLV-GLA 670 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~-~~~ 670 (919)
+......+...+.+..+...+...... ........+..+...+...+++..+...+...... +. ..+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444333331 22223334444555555666667777776666532 11 22333333 678
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCC
Q 002460 671 QHGNGEETLKLFEDMKAHGVEP----DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGR 745 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~ 745 (919)
..|+++.|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...++
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 88999999999998855 344 2234444444567788999999999888763 333 46778888888888899
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 746 TKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 746 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999988876 44454 455666666666667899999999999999886
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=95.10 E-value=2.8 Score=45.54 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHh---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 002460 709 LVSEAYENFHLMREKYGIEPE-VEHYSFLVDALG---------RAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQG 776 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~---------r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 776 (919)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888754467776 555555544332 123455677777665 4444 6667777777777778
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
+++.|...++++..++|+.+.+|...+.+..-.|+.++|.+..++ +++.+|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~----alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK----SLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH----HhccCch
Confidence 899999999999999999999999999999999999999988854 4444554
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.82 Score=44.97 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=79.9
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.-+.++..+.-+|.+.-.+.++++.++..-+-+......|...-.+.|+++.|..+|+...+. .-..+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~---- 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIM---- 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHH----
Confidence 335566666677777788888888887543445666677777777888888888888866543 111222222221
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 741 GRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+.......+.-.+|+..|-+.+.++++.+|.++.+-+.-+-+..-.|+..+|.+..+
T Consensus 254 -----------------------V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 254 -----------------------VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred -----------------------HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 122222223344555556666666666666666555555555555566666666665
Q ss_pred HHHhC
Q 002460 821 EMKRK 825 (919)
Q Consensus 821 ~m~~~ 825 (919)
.|+++
T Consensus 311 ~~~~~ 315 (366)
T KOG2796|consen 311 AMVQQ 315 (366)
T ss_pred HHhcc
Confidence 55543
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.88 E-value=8.7 Score=43.39 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=86.2
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCchHHHHHH
Q 002460 439 NGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLD----EITIATAVKACGCLLMLKQGKQM 514 (919)
Q Consensus 439 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 514 (919)
.|++++|++++-.+..+|.. |..+.+.|++-...++++.= |-..| ...++.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999998888877753 34445555555555444321 11111 23455555566666667777666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHh
Q 002460 515 HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEF 594 (919)
Q Consensus 515 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 594 (919)
+.+--. ....+++|.+...+++-+.+-..+++. ....-.|..++...|.-++|.+.|-+-- .|
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 654321 123566666666666666666666552 3334556677777777777777664421 11
Q ss_pred HHHHHHHHHcccccHHHHHHHHH
Q 002460 595 TFAILVKASSCLTALEQGRQIHA 617 (919)
Q Consensus 595 t~~~ll~a~~~~~~~~~a~~~~~ 617 (919)
...+.+|....++.+|.++-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 133455666666666655543
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.79 E-value=0.23 Score=43.09 Aligned_cols=89 Identities=22% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHhhcCCc
Q 002460 739 ALGRAGRTKEAGELILSM-PFE-ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS----AYVLLSNIFAAANQW 812 (919)
Q Consensus 739 ~~~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 812 (919)
++...|++++|++.|.+. ..- ..++.|+.-..+++.+|+.++|..-+++++++...... +|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456777888888777665 222 35677777788888888888888888888887543222 577778888888888
Q ss_pred chHHHHHHHHHhCCC
Q 002460 813 DDVTSARGEMKRKNV 827 (919)
Q Consensus 813 ~~a~~~~~~m~~~~~ 827 (919)
++|..-|+..-+-|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888887777666654
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=10 Score=43.52 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccc
Q 002460 528 CVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLT 607 (919)
Q Consensus 528 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 607 (919)
.+.+--+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+.+. .++-|.....+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455566778888899998888888888888888888999999888777655543 2466777888899999
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 608 ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 608 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
+.++|..+..+.... .-.+.+|.++|++.+|.++
T Consensus 759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 999988887543221 1478888999988888765
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.65 E-value=0.3 Score=43.52 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 002460 725 GIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEASASMHRALLGACRVQ 775 (919)
Q Consensus 725 ~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~ 775 (919)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666543 4444456666666554433
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.48 E-value=0.26 Score=43.86 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYT 707 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 707 (919)
..++.+++.++++.|+++....+++..=.-|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666777777777777777777654321111 0000000 111234678899999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 002460 708 GLVSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 708 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 741 (919)
|++..|.++.+...+.|+++-+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998888888988886443
No 234
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.39 E-value=0.11 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999999875
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.31 E-value=2 Score=42.26 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE 729 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 729 (919)
....+...|++.+|++.|+++... -|+. .....+..++-..|++++|...++...+.+.-.|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 445566778888888888888775 3332 24556677778888888888888888776554444
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.29 E-value=0.23 Score=45.97 Aligned_cols=69 Identities=29% Similarity=0.421 Sum_probs=43.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhH----HhcCCCCChhHH
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMR----EKYGIEPEVEHY 733 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 733 (919)
..++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.+.|+.+. +++|+.|+..+-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34555666777788888888877773 45 56677778888888888888887776654 345777776543
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.25 E-value=1.7 Score=38.02 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA 749 (919)
.-.|..++..++..+.... .+..-++-++.--...-+-+-..+.++++-.-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456666666666666552 23333443443323333333334444444222211 234455555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 750 GELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 750 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
...+-.+. .+.......+.+...+|+-+.-..++..+..-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444442 223344556677788899888888888888655557889999999999999999999999999999875
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.23 E-value=0.33 Score=53.69 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 668 GLAQHGNGEETLKLFEDMKAHGVEP--DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 668 ~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
.....|+++++.++.+.-. +-| +..-...++.-+.+.|..+.|+++...-..+ .++....|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCC
Confidence 3456778888777664111 222 1334677888888999999999876554443 456678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 746 TKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
++.|.++.++.. +...|..|...+..+||++.|+.++++.- -+..|+-+|...|+-+.-.++-+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887654 77899999999999999999999998654 4667888899999887766666655555
Q ss_pred C
Q 002460 826 N 826 (919)
Q Consensus 826 ~ 826 (919)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.39 Score=50.55 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhh
Q 002460 731 EHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAA 808 (919)
Q Consensus 731 ~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 808 (919)
..+..+.-.|.+.+++.+|++..++. ..+| |.-.+--=..+|...|+++.|+..++++++++|+|..+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34666777888999999999888876 3444 555555667788899999999999999999999999888888877776
Q ss_pred cCCcchH-HHHHHHHHh
Q 002460 809 ANQWDDV-TSARGEMKR 824 (919)
Q Consensus 809 ~g~~~~a-~~~~~~m~~ 824 (919)
..++.+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6665555 456766654
No 240
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.04 E-value=4.3 Score=39.97 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=25.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHcccccHHHHHHHHHHHHH
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVP--DEFTFAILVKASSCLTALEQGRQIHANLIK 621 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 621 (919)
...+.+.|++++|++.|+++....... -......+..++-+.|+.+.|...++.+++
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455666666666666665542111 111223334444455555555555544443
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.97 E-value=0.11 Score=33.81 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999999863
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.63 Score=47.21 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=51.3
Q ss_pred CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhcc---CCHHHHHHHHHHhHHhcCCCC-ChhH
Q 002460 658 NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYT---GLVSEAYENFHLMREKYGIEP-EVEH 732 (919)
Q Consensus 658 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p-~~~~ 732 (919)
|...|-.|...|..+|+++.|..-|.+..+ +.| |...+..+..++..+ .+..++..+|+++.. ..| ++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 566666677777777777777777766666 344 333444444433222 233456666666643 233 3444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 733 YSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 733 y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
...|...+...|++.+|...++.|
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555556666655555555
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.58 E-value=10 Score=39.41 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHHHcccccHH---HHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeehHHHHHH
Q 002460 596 FAILVKASSCLTALE---QGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMR---NTVLWNAMLVGL 669 (919)
Q Consensus 596 ~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 669 (919)
+..++.++...+..+ +|..+.+.+.+. .+..+.++-.-++.+.+.++.+++.+++.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 444455555544433 333344444222 1122233333344555566666666666666521 223444444443
Q ss_pred Hh--cCCHHHHHHHHHHHHHcCCCCC
Q 002460 670 AQ--HGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 670 ~~--~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
.. ......|...+.+++...+.|.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 11 1223445555555544434443
No 244
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.55 E-value=0.41 Score=44.98 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=65.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 738 DALGRAGRTKEAGELILSM-PFEA------SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
+-+...|.+++|..-+..+ ..-| ....|..-..+..+.+..+.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455677777777766654 1112 12334444445667789999999999999999988888888899999999
Q ss_pred CcchHHHHHHHHHhCC
Q 002460 811 QWDDVTSARGEMKRKN 826 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~ 826 (919)
++++|++-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999998877643
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.54 E-value=12 Score=40.05 Aligned_cols=87 Identities=7% Similarity=0.100 Sum_probs=61.6
Q ss_pred hhcCCCCcchhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHHHHHHHHHHhCCCccchH
Q 002460 290 LYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIV 369 (919)
Q Consensus 290 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 369 (919)
....+.|+.+|-.||.-+-..|..++..+++++|..- ..--...+..-|++-....++...+.+|++-++..+. +..
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldL 111 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDL 111 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhH
Confidence 3445568889999999999999999999999999642 1112345556677766778888888888888777665 344
Q ss_pred HhHHHHHhHh
Q 002460 370 GNSLINMYSK 379 (919)
Q Consensus 370 ~~~li~~~~k 379 (919)
|..-++--.+
T Consensus 112 W~lYl~YIRr 121 (660)
T COG5107 112 WMLYLEYIRR 121 (660)
T ss_pred HHHHHHHHHh
Confidence 4444444333
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.45 E-value=0.37 Score=51.96 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 730 VEHYSFLVDALGRAGRTKEAGELILSM-PFEASA----SMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
...++.+..+|...|++++|+..+++. .+.|+. ..|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666777777777777777663 555553 34677777777777777777777777775
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=8.4 Score=37.88 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCchH
Q 002460 732 HYSFLVDALGRAGRTKEAGELILSMP-------FEASA-SMHRALLGACRVQGDTETGKWVAEKLMAL----EPFDSSAY 799 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~ 799 (919)
.|.....+|.|..+++||-..+.+-. .-|+. ..+-+.+-.+....|+..|+..++.-.++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766665531 11222 12333333444456777777777775543 45566666
Q ss_pred HHHHHHHhhcCCcchHHHHH
Q 002460 800 VLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 800 ~~l~~~y~~~g~~~~a~~~~ 819 (919)
..|...|. .|+.+++.++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 66666554 56666665554
No 248
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.07 E-value=11 Score=44.09 Aligned_cols=48 Identities=21% Similarity=0.059 Sum_probs=34.0
Q ss_pred chhhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCCC
Q 002460 298 VLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTD 346 (919)
Q Consensus 298 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g 346 (919)
..--.+|-.+.+.|++++|.++.++.. .........|...+..+....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhCC
Confidence 334467888999999999999995544 345566677777788887654
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.87 E-value=7.2 Score=42.66 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhCCCCCc
Q 002460 781 GKWVAEKLMALEPFDSS 797 (919)
Q Consensus 781 a~~~~~~~~~~~p~~~~ 797 (919)
|.+++.++.+.+|.-|.
T Consensus 365 aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 365 AVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHhCCCCch
Confidence 66888899999997554
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=4.1 Score=41.38 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=77.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRA---LLGACRVQGDTE 779 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 779 (919)
.....|+..+|...|+..... ..-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 355678888888888777653 222355666778888888888888888888875443333333 122222222222
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHH
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 822 (919)
+. ..++.-+.-+|+|...-..|+..|...|+.++|.+.+=.+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 2334455678999999999999999999999998765444
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.57 E-value=3.3 Score=37.83 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA-GRTKEAGELILSMPFEASASMHRALLGAC 772 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~~ 772 (919)
...++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544421 22223333333 5556666655542 2344555555444
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.55 E-value=5.4 Score=36.45 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=78.6
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.-..++..+...+.......+++.+...+ ..+...++.++..|++.+ .++..++++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556777777778888888888888775 345667777888777653 3444444442 12233344466777
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHh
Q 002460 741 GRAGRTKEAGELILSMPFEASASMHRALLGACRVQ-GDTETGKWVAEKLMALEPFDSSAYVLLSNIFA 807 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 807 (919)
.+.+.++++.-++.+++... -.+.....+ ++++.|.+.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777888888887775322 222233334 778888887775 335556666655443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.46 E-value=3.7 Score=45.57 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred HHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHH
Q 002460 534 LDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGR 613 (919)
Q Consensus 534 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 613 (919)
.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... +..++-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344567888999988887776 556899999999999999999988887532 344555566667766666
Q ss_pred HHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHh
Q 002460 614 QIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQ 653 (919)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 653 (919)
++.......|- +|....++.-.|++++..+++.+
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666655542 33444455556676666666543
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.41 E-value=0.89 Score=45.18 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=84.1
Q ss_pred HHHHhccCC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccccc----------
Q 002460 546 AQSIFNDIP--APDDVAWTTMISGCVDN-----GEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTA---------- 608 (919)
Q Consensus 546 A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------- 608 (919)
.++.|...+ ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 356677776 67888998888888754 5667777888999999999999999999998766432
Q ss_pred ------HHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCH-HHHHHHHHhC
Q 002460 609 ------LEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNI-EDAYILFKQM 654 (919)
Q Consensus 609 ------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~ 654 (919)
-+-+..++++|..+|+.||-.+-..|++++++.|-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234778889999999999999999999999887753 3333443333
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.37 E-value=13 Score=37.17 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEP----DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV 730 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 730 (919)
-+..-.+.|++++|.+.|+.+... .| ...+-..++.++-+.+++++|...+++....++-.|+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 344445677788888888777764 33 23356666667777777778777777777766666654
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.36 E-value=18 Score=38.86 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=86.3
Q ss_pred hhhcHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHH-HHHH
Q 002460 629 FVGISLVDMYAKCGNIEDAYILFKQMD-----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFI-GVLS 702 (919)
Q Consensus 629 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 702 (919)
.++.++++...+..-++.|..+|-+.. .+++..++++|.-++ .|+...|..+|+--+.. .||...|. -.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 455556666666666666777766654 245666777766554 45667777777655542 45555432 3455
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPE--VEHYSFLVDALGRAGRTKEAGELILSM-PFEASASMHRALLGACRVQG 776 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 776 (919)
-+...++-+.|..+|+...++ +..+ ...|..+|+-=..-|++..|..+=++| ..-|...+-..+.+-+....
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 556677777788888766653 3333 567777777777778887777766665 23344444444444454443
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.34 E-value=23 Score=39.86 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=128.2
Q ss_pred CchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC---eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 002460 627 DPFVGISLVDMYAKCGNIEDAYILFKQMDMRN---TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA 703 (919)
Q Consensus 627 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 703 (919)
+..+|...++--.+.|+.+.+.-+|++...|- ...|--.+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45667777788889999999999999987552 335655555555568888888887776664333333333333334
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAG---ELILSM-PFEASASMHRALLG-----ACR 773 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 773 (919)
+-..|+.+.|..+++.+.+++ |+ ++.-.--+....|.|+.+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 677899999999999999863 65 444444566778899999988 555544 33334433333332 134
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
..++.+.|..++.++.+..|.+...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56899999999999999999999999999888776653
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.01 E-value=1 Score=46.34 Aligned_cols=224 Identities=15% Similarity=0.042 Sum_probs=112.0
Q ss_pred HHHcCChhHHHHHHHHHHhc--CCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHc--CCCCCc---hhhcHHHHHHHH
Q 002460 568 CVDNGEEDLALSIYHQMRLS--GVVPDEFTFAILVKASSCLTALEQGRQIHANLIKL--DCSSDP---FVGISLVDMYAK 640 (919)
Q Consensus 568 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~y~~ 640 (919)
+....+.++|+..+.+-+.. ...--..+|..+..+.++.|..+++...--..+.. ...... ..|-.|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888887776543 11223346666777777777777665543211111 111111 122223334444
Q ss_pred cCCHHHHHHHHHhCC-CC-------CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C--ChhHHHHHHHHHhcc
Q 002460 641 CGNIEDAYILFKQMD-MR-------NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVE---P--DSVTFIGVLSACSYT 707 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~-~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~t~~~ll~a~~~~ 707 (919)
..++.+++.+-+.-. -| .-...-+|..++.-.+.++++++.|+...+-.-. | .-..+..|-+.|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 444444444333211 01 1122334555566666677777777766552111 1 123566777777777
Q ss_pred CCHHHHHHHHHHhH---HhcCCCCChhHHHHH-----HHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHH
Q 002460 708 GLVSEAYENFHLMR---EKYGIEPEVEHYSFL-----VDALGRAGRTKEAGELILSM-------PFEAS-ASMHRALLGA 771 (919)
Q Consensus 708 g~~~~a~~~~~~m~---~~~~~~p~~~~y~~l-----i~~~~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~ 771 (919)
.++++|.-+..+.. ..+++.--..-|.++ .-+|...|++-+|.+..++. +.+|. +.....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777766554432 223333222223332 22344555555555554432 22221 2344556666
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 002460 772 CRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~ 791 (919)
|+..|+.|.|..-++++...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77777777777777766654
No 259
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.97 E-value=4.3 Score=37.44 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 002460 700 VLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMP-FEASASMHRALLGACRVQGD 777 (919)
Q Consensus 700 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~ 777 (919)
+++.-...++.+++..+++.+. -+.|. .++-..-+..+.+.|++.+|+.+++++. -.|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3444556778889998888885 45675 4444455566788999999999999883 34555666788888877655
Q ss_pred HHHHHHHHHHHHhhCCCCCchHH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
-..=..+++++++..| |+.+-.
T Consensus 93 D~~Wr~~A~evle~~~-d~~a~~ 114 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA-DPDARA 114 (160)
T ss_pred ChHHHHHHHHHHhcCC-ChHHHH
Confidence 5555666777777665 344433
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.76 E-value=4.9 Score=36.32 Aligned_cols=92 Identities=16% Similarity=0.052 Sum_probs=44.9
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH--HHHHHHHHHH-----
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM----PFEASA--SMHRALLGAC----- 772 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~--~~~~~ll~~~----- 772 (919)
...|++++|.+.|+.+..++-..|- ....--|+.+|-+.|++++|...+++. |..|+. ..+..=|..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence 3445555555555555554433332 334444555555555555555555443 223322 1111111111
Q ss_pred ---------HhcCCHHHHHHHHHHHHhhCCCCC
Q 002460 773 ---------RVQGDTETGKWVAEKLMALEPFDS 796 (919)
Q Consensus 773 ---------~~~g~~~~a~~~~~~~~~~~p~~~ 796 (919)
+-.+....|...+++++..-|+++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 111235677788888888888654
No 261
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.73 E-value=0.51 Score=43.97 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC----cchHHHHHHHHH---hCCCCCCchHHHHHHH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ----WDDVTSARGEMK---RKNVKKDPADLIFAKV 839 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m~---~~~~~~~~~~~i~~~l 839 (919)
+++|..-+++++.++|+...++..|+++|...|. -.+|..+|++.. ++.+..+|+.+.|.+-
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4567777888889999999999999999987764 233444444433 2334456776666543
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.22 E-value=2 Score=43.11 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=52.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 002460 671 QHGNGEETLKLFEDMKAHGVEPDS----VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGR 745 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~ 745 (919)
+.|++.+|..-|...++. -|+. ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--|...+.+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 556677777777777664 2332 23445666677777777777777777666555554 3566666666666666
Q ss_pred HHHHHHHHHhC
Q 002460 746 TKEAGELILSM 756 (919)
Q Consensus 746 ~~eA~~~~~~m 756 (919)
.++|..++++.
T Consensus 231 ~d~A~atl~qv 241 (262)
T COG1729 231 TDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 263
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.14 E-value=5.6 Score=46.59 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCCh-------hHHHHHHHHHHHCCCCCCHhHH--HH
Q 002460 430 TALIDVYCRNGSMAEAEYLFENKD---GFDLATWNAMIFGYILSNNS-------HKALELFSHMHTSGERLDEITI--AT 497 (919)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~t~--~~ 497 (919)
=++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+.+- ++...-|++........|++-. -.
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 367888999999999999993332 23445677778888775332 3556666666655443366532 23
Q ss_pred HHHHHhccC-c-------hHHHHHHHHHHHHhCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHH
Q 002460 498 AVKACGCLL-M-------LKQGKQMHAYAMKSGFEL-----DLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTM 564 (919)
Q Consensus 498 ll~~~~~~~-~-------~~~a~~~~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 564 (919)
+|..|--.. . .+.-..+.-.+++..... +..++..|=....+-| .+.|.. ..+... .
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~---Y 264 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL---Y 264 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-----------H
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH---H
Confidence 343332211 1 222222222222322211 1223322222221111 233333 122222 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcC-CCCCchhhcHHHHHHHH---
Q 002460 565 ISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLD-CSSDPFVGISLVDMYAK--- 640 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~--- 640 (919)
...+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455678999999998877 3345567777776665544333222211 2222211 11222456678888886
Q ss_pred cCCHHHHHHHHHhCC
Q 002460 641 CGNIEDAYILFKQMD 655 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~ 655 (919)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 467788888877665
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.14 E-value=12 Score=40.15 Aligned_cols=72 Identities=18% Similarity=0.107 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCCC---Chh----hHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002460 532 GILDMYVKCGAMVDAQSIFNDIPAP---DDV----AWTTMISGCVD---NGEEDLALSIYHQMRLSGVVPDEFTFAILVK 601 (919)
Q Consensus 532 ~Li~~y~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 601 (919)
.|+-.|....+++...++.+.+... +.. .---..-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577788888888888877652 111 11122334555 7888999999888766666777777776554
Q ss_pred HH
Q 002460 602 AS 603 (919)
Q Consensus 602 a~ 603 (919)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 265
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.06 E-value=36 Score=39.55 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 002460 426 SFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGC 504 (919)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 504 (919)
..++..+|+.+.-.|++++|-...-.|-..+..-|.--+.-+...++......+ +....-+.++..|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 345677778888888888888888777777777777777777766665433222 2222223445566666666654
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.88 E-value=2.1 Score=42.94 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH-HHHHHHH
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM----PFEASA-SMHRALL 769 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~-~~~~~ll 769 (919)
.|..-+. +...|++.+|..-|....+.|--.+ ....+-.|...+...|++++|...|..+ |..|.+ ..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554444 3456778888888888887542211 2445566778888888888887777665 333322 3444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
......|+.++|...++++++--|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 55566677777777777777777765443
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=18 Score=35.50 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHHh
Q 002460 776 GDTETGKWVAEKLMA 790 (919)
Q Consensus 776 g~~~~a~~~~~~~~~ 790 (919)
+++.+|..+++++..
T Consensus 168 eqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555444443
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.67 E-value=1.8 Score=37.83 Aligned_cols=88 Identities=18% Similarity=0.122 Sum_probs=49.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhc
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PF-EA-SA---SMHRALLGACRVQ 775 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~ 775 (919)
+.+..|+.+.|++.|..... +-| ....||.-..++.-+|+.++|++=+++. .. .| .- ..+..-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35566677777766666643 233 4566666666666677777766665554 11 11 11 1222233346777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 002460 776 GDTETGKWVAEKLMALEP 793 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p 793 (919)
|+.+.|..-++.+-++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777776666655543
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.45 E-value=0.35 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999887643
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.38 E-value=8.4 Score=43.47 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCh-----hHHHHHHHHH-h---ccCCHHHHHHHHHHhHHhcCCCCChhHH
Q 002460 664 AMLVGLAQHGNGEETLKLFEDMKAHG-VEPDS-----VTFIGVLSAC-S---YTGLVSEAYENFHLMREKYGIEPEVEHY 733 (919)
Q Consensus 664 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~-~---~~g~~~~a~~~~~~m~~~~~~~p~~~~y 733 (919)
.+++...-.|+-+.+++.+.+..+.+ ++-.. .+|..++..+ . .....+.|.++++.+..+| |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 34445555666677777666654421 11111 1233333322 2 2456788888888887753 665544
Q ss_pred HH-HHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH-HHHHH
Q 002460 734 SF-LVDALGRAGRTKEAGELILSMPF-E-----ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV-LLSNI 805 (919)
Q Consensus 734 ~~-li~~~~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 805 (919)
.. -...+...|++++|.+.+++.-. + -....+.-+.+.+....++++|...+.++.+.+.-....|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 43 34556678999999999986521 1 12344555666777889999999999999987766555555 45556
Q ss_pred HhhcCCc-------chHHHHHHHHH
Q 002460 806 FAAANQW-------DDVTSARGEMK 823 (919)
Q Consensus 806 y~~~g~~-------~~a~~~~~~m~ 823 (919)
|...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 7778888 78888777654
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=15 Score=37.46 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
......|+..+|..+|+..... .| +...-..+..++...|+++.|..++..+..+ --.........=+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888874 34 3456667788888899999998888877442 111111112234556666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHhhcCCcchHH
Q 002460 746 TKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALE--PFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
..+..++..+..-.| |...--.|...+...|+.+.|...+=.++..+ -+|..+--.|..++..-|.-+.+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 666666666654455 55555666677777788888877766666543 345666666777777666554443
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.18 E-value=15 Score=34.44 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCCchhHHHHhhhhcCCCChhHHH
Q 002460 317 IECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQ 352 (919)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~ 352 (919)
++.++.+.+.|+.|+...+..++..+.+.|....-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666777777777777777777777655433
No 273
>PRK15331 chaperone protein SicA; Provisional
Probab=90.17 E-value=4.9 Score=37.25 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=41.8
Q ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 002460 638 YAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAY 714 (919)
Q Consensus 638 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 714 (919)
+-..|++++|..+|.-+.. -|..-|..|..++-..|++++|+..|......+ .-|...+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3345666666666554431 233345555555555555555555555544422 123333334444555555555555
Q ss_pred HHHHHhHH
Q 002460 715 ENFHLMRE 722 (919)
Q Consensus 715 ~~~~~m~~ 722 (919)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555543
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.97 E-value=0.13 Score=47.59 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=65.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchH
Q 002460 164 PLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEE 243 (919)
Q Consensus 164 ~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~ 243 (919)
.++..+.+.+........++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877777889999999999999888888888874332 444566777777777777
Q ss_pred HHHHHHHHHH
Q 002460 244 VFHLFVDLHR 253 (919)
Q Consensus 244 A~~l~~~m~~ 253 (919)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 7777776543
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.91 E-value=2.7 Score=47.43 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHh----hcCCHHHHH
Q 002460 680 KLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-----EHYSFLVDALG----RAGRTKEAG 750 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~~~----r~g~~~eA~ 750 (919)
-+|.-++.. ++| .+..+++...-.|+-+.|.+.+....+..++.-.. -.|..++..+. .....++|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 455555553 333 34556666777899999999988876643333321 23333333332 356889999
Q ss_pred HHHHhC-CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 751 ELILSM-PFEASASMHRALLG-ACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 751 ~~~~~m-~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
++++.+ ..-|+...|.-.-+ .++..|++++|...++++++...+ ..-.+.-+++.|...++|++|.+.+..+.+
T Consensus 254 ~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 254 ELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 999998 45688887765554 467889999999999988753322 233577889999999999999999999886
Q ss_pred C
Q 002460 825 K 825 (919)
Q Consensus 825 ~ 825 (919)
.
T Consensus 334 ~ 334 (468)
T PF10300_consen 334 E 334 (468)
T ss_pred c
Confidence 4
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.63 E-value=0.69 Score=29.93 Aligned_cols=31 Identities=26% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777778888888888888888774
No 277
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.43 E-value=50 Score=43.58 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+|-.....+|..|.++.|..+.-++.+..+ +.++.-.+...+..|+-..|..++++-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46899999999999999999999998888774 7889999999999999999999998776543
No 278
>PRK09687 putative lyase; Provisional
Probab=89.41 E-value=29 Score=36.04 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=32.0
Q ss_pred CchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 627 DPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHG-NGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 627 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ +...+...+..+.. .+|..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33344444555555554322222222222333333333333333332 12344444444442 334444444444555
Q ss_pred ccCC
Q 002460 706 YTGL 709 (919)
Q Consensus 706 ~~g~ 709 (919)
+.|.
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5444
No 279
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.36 E-value=6.7 Score=37.77 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=92.3
Q ss_pred eeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 002460 659 TVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLV 737 (919)
Q Consensus 659 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 737 (919)
+..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++--.|++.-|.+=|...-+.-.-.|-...|-.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777777788888888888888877 3442 22322222244556788888776665544323333344443333
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHhhcC
Q 002460 738 DALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFD-------SSAYVLLSNIFAAAN 810 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 810 (919)
.+.-+..+|..-+.+--...|...|...+-.+.- |... -+..++++.+...++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2445667776544332224455666665544432 1111 112222333222222 347889999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 002460 811 QWDDVTSARGEMKRKN 826 (919)
Q Consensus 811 ~~~~a~~~~~~m~~~~ 826 (919)
+.++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998766543
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=3.3 Score=42.36 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=89.1
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH---HHHHH-HHHHhcCCHH
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PF-EASASM---HRALL-GACRVQGDTE 779 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~-~p~~~~---~~~ll-~~~~~~g~~~ 779 (919)
..|...+|...++++.++ .+.|...+...=+++.-.|+.+.-...+++. |. .||... .+-+. -+....|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 357778888888998885 4556777777778888899999888888887 43 555532 22233 3345668999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHH
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
+|++.++++++++|.|.-+...++.++...|+..|+.+...
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999987654
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.13 E-value=22 Score=38.53 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=81.1
Q ss_pred CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hh
Q 002460 657 RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP---DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE--VE 731 (919)
Q Consensus 657 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 731 (919)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++..... .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345578888888899999999999888887743222 2233444445556678888888888777662 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 732 HYSFLVDALGRAGRTKEAGEL-ILSMPFEASASMHRALLGACRV------QGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 732 ~y~~li~~~~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
....+...+.. ..+..... ........-...+..+..-+.. +++.+.+...++++.++.|+...+|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001122222233333 378888999999999999988888888777
Q ss_pred HHhh
Q 002460 805 IFAA 808 (919)
Q Consensus 805 ~y~~ 808 (919)
.+..
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6653
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.09 E-value=2.6 Score=43.02 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHh-----CCCCCCchHHHHHH
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKR-----KNVKKDPADLIFAK 838 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~i~~~ 838 (919)
++..+...+...|+.+.+...++.+++.+|-+...|..|..+|...|+...|+..++.+++ .|+. |+.++...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHHH
Confidence 4555667777888899999999999999999999999999999999999999998887764 4544 44444444
Q ss_pred HHHH
Q 002460 839 VEGL 842 (919)
Q Consensus 839 l~~l 842 (919)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.82 E-value=11 Score=39.27 Aligned_cols=219 Identities=11% Similarity=0.034 Sum_probs=135.0
Q ss_pred HHcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChhHHHHHHH-HHHhc-CCCCCH---hHHHHHHHHHccc
Q 002460 538 VKCGAMVDAQSIFNDIPA------PDDVAWTTMISGCVDNGEEDLALSIYH-QMRLS-GVVPDE---FTFAILVKASSCL 606 (919)
Q Consensus 538 ~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~-g~~p~~---~t~~~ll~a~~~~ 606 (919)
....+.++|...+.+... .-..++..+..+.++.|++++++..-- +|.-. ...-.. ..|..+-.++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776665443 223467778888899999888876432 22111 011111 2344444444444
Q ss_pred ccHHHHHHHHHHHHHc-CCCC---CchhhcHHHHHHHHcCCHHHHHHHHHhCC-------CC--CeeeehHHHHHHHhcC
Q 002460 607 TALEQGRQIHANLIKL-DCSS---DPFVGISLVDMYAKCGNIEDAYILFKQMD-------MR--NTVLWNAMLVGLAQHG 673 (919)
Q Consensus 607 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g 673 (919)
.++.+++.+-..-... |..+ .-...-++..++.-.+.++++++.|+... .+ ....+-+|.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544333221 2222 11233446777777888899988888764 22 3457889999999999
Q ss_pred CHHHHHHHHHHHHHc--CCCCC--hhHHHHHH-----HHHhccCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHH
Q 002460 674 NGEETLKLFEDMKAH--GVEPD--SVTFIGVL-----SACSYTGLVSEAYENFHLMREK---YGIEPE-VEHYSFLVDAL 740 (919)
Q Consensus 674 ~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~y~~li~~~ 740 (919)
++++|+-+..+..+. .+..+ ..-|..++ -++...|..-.|.+..++..+- .|-.|. .....++.|.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888877552 12222 22344432 2577789988898888776542 233332 45567899999
Q ss_pred hhcCCHHHHHHHHHhC
Q 002460 741 GRAGRTKEAGELILSM 756 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m 756 (919)
...|+.|.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999998887763
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.74 E-value=3.3 Score=37.42 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=41.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 774 VQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 774 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
..++.+.++.+++.+.-+.|+.+..-..-++++...|+|+||..+++...+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3577777777777777777877777777777888888888888877777666543
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.65 E-value=7.1 Score=40.80 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhc-cCC--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDSV-TFIGVLSACSY-TGL--VSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~-~g~--~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.+.++.+|+.+.+.|+..+.. -+.+-+-+++. ... +..+.++++.+.+. |+++...+|..+.-+-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 367788899999988887443 34443333333 222 45788889999887 9999999988766443
No 286
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.43 E-value=59 Score=38.32 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 002460 672 HGNGEETLKLFEDMKAHG-VEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKE 748 (919)
Q Consensus 672 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~e 748 (919)
..+.+.|..++.+..... +.+... +...+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 446688888998875432 333322 3333333333333256777777665332 1244444445555558999999
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 749 AGELILSMPFE-ASASMHRA-LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 749 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
+...|..|+.. .+..-|.- +..+....|+.+.|...++++.. + ...|-.|+.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 99999998521 12222332 33444567999999999998744 2 235555543
No 287
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.22 E-value=5.6 Score=38.35 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=47.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHH---HHHHHHH
Q 002460 771 ACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVE---GLIKRIK 847 (919)
Q Consensus 771 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~---~l~~~~~ 847 (919)
...+.+.+++|+..++.-.+-+|.|...-..|..+|+-.|+|++|..-.+..-+..-.-.++-+.|..+- .+....-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666666666666666666655555444333344445555442 2333334
Q ss_pred hCCcccCC
Q 002460 848 EGGYVPDT 855 (919)
Q Consensus 848 ~~g~~p~~ 855 (919)
+-|-+|++
T Consensus 90 ag~~~Pgf 97 (273)
T COG4455 90 AGGAVPGF 97 (273)
T ss_pred ccCCCCCC
Confidence 44555554
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.06 E-value=36 Score=35.40 Aligned_cols=87 Identities=7% Similarity=-0.051 Sum_probs=46.0
Q ss_pred cchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHh--CCChhHHHHH
Q 002460 405 EGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDGF---DLATWNAMIFGYIL--SNNSHKALEL 479 (919)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~ 479 (919)
+....+..+.+.+..... -.+.++-.-+..+.+.++.+++.+++.+|... ....+..++..+-+ ......|...
T Consensus 101 ~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ 179 (278)
T PF08631_consen 101 ESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFC 179 (278)
T ss_pred HHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHH
Confidence 344445555555533222 22344444455555577777887777776542 23445555554422 2334566677
Q ss_pred HHHHHHCCCCCCH
Q 002460 480 FSHMHTSGERLDE 492 (919)
Q Consensus 480 ~~~m~~~g~~p~~ 492 (919)
++.+....+.|..
T Consensus 180 ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 180 LDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhCCCh
Confidence 7666665555444
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.02 E-value=48 Score=40.54 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=71.8
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLV 710 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 710 (919)
+.-.++.--+.|.+.+|..++..=.+.-.+.|.+...-+...+.+++|.-+|+..-+ .--.+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444455666666766665433333334444445555566777777777765422 12256678888999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 002460 711 SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEA 760 (919)
Q Consensus 711 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p 760 (919)
++|..+-.++.. +-.--..+-..|+.-+..+++.-||-++..+....|
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 998888776632 111113334567778888888888888887764444
No 290
>PRK10941 hypothetical protein; Provisional
Probab=87.37 E-value=3.8 Score=41.97 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..+.|-.++...++++.|.++.+.++.+.|+++.-+.-.+-+|++.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677788999999999999999999999999999999999999999999998887766543
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.32 E-value=2.9 Score=38.50 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC
Q 002460 742 RAGRTKEAGELILSM-PFEASASMHRALL-GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 742 r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 811 (919)
+.++.+++..++..+ -..|.......+- +.+..+|++.+|.++++.+.+-.|..+..-.+++..+...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 455666666666655 2344333222221 224455666666666666655555555555555555554443
No 292
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=5.1 Score=39.22 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHH
Q 002460 744 GRTKEAGELILSM-PFEASASMHR-ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 744 g~~~eA~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
.+++.|...+.+. ...|+..+|. .=+-.+.+..+++.+.+--.+++++.|+....+..|+........+++|+.++.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3455555544443 4567664433 3333345567888888888899999999888999999999999999999998887
Q ss_pred HH--hCCCCCCchHHHHHHHH
Q 002460 822 MK--RKNVKKDPADLIFAKVE 840 (919)
Q Consensus 822 m~--~~~~~~~~~~~i~~~l~ 840 (919)
.. -+.-+..++.+|...|.
T Consensus 104 a~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHH
Confidence 73 34444556666655444
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=70 Score=37.62 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=47.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCchHHHHHHHHhhcCC
Q 002460 736 LVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA-LEPFDSSAYVLLSNIFAAANQ 811 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~ 811 (919)
++..+....+.+++..+.+..+.. ++..|-.+|.-+...+.++.-.+..+++++ +.-++--.-..+.+++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 344456667788888888877533 788888888888888866665555555543 233333334555666666654
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.75 E-value=39 Score=34.39 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
...|...|++.+|..+-++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3467889999999999999999999999999999999999999888888887765
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.61 E-value=1.2 Score=29.38 Aligned_cols=28 Identities=32% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 764 MHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888888888888888886544
No 296
>PRK12798 chemotaxis protein; Reviewed
Probab=86.08 E-value=55 Score=35.43 Aligned_cols=204 Identities=14% Similarity=0.207 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHhCCC----CCeeeehHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChh----HHHHHHHHHhccCCHH
Q 002460 641 CGNIEDAYILFKQMDM----RNTVLWNAMLVGL-AQHGNGEETLKLFEDMKAHGVEPDSV----TFIGVLSACSYTGLVS 711 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 711 (919)
.|+.++|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888863 3455666666654 445679999999998876 456432 3444455678899999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHH-HHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002460 712 EAYENFHLMREKYGIEPEVEHYS-FLVDALGRA---GRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEK 787 (919)
Q Consensus 712 ~a~~~~~~m~~~~~~~p~~~~y~-~li~~~~r~---g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 787 (919)
++..+-..-..+|...|-...|. .++.++.+. -..+.-.+++..|.-.--..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888777777777644433 333344333 34445555666664333346777788888899999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHhhc-----CCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 788 LMALEPFDSSAYVLLSNIFAAA-----NQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 788 ~~~~~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
+..+.. ....-...+++|... .+.++|.+.++.+-...+.+ ....+.+....+...+.+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~-~Dr~Ll~AA~~va~~V~~ 346 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE-RDRALLEAARSVARQVRR 346 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh-hhHHHHHHHHHHHHHHhc
Confidence 999874 344555566666643 45666666655443333322 113333333444444443
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.02 E-value=24 Score=33.75 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCCCChhHHHH--HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHhhcCCHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIG--VLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF-----LVDALGRAGRTKEA 749 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----li~~~~r~g~~~eA 749 (919)
+.....+++....-+-...++.. +...+...|++++|...++..... |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555566655321112222222 334577888888888887766432 33333333 44566778888898
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 750 GELILSMPFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 750 ~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
+.+++....+. .+..-..-..++...|+-++|+..++++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888764211 1222233345667778888888888888877653
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.81 E-value=16 Score=39.61 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 760 ASASMHRALLGACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 760 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
....+|..+...|+++|+++.|..++.++...++. .+.....-+++....|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568889999999999999999999999886532 466777789999999999999988776665
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.47 E-value=15 Score=38.46 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHhccCCC-------CChhhHHHHHHHHHHcCC----hhHHHHHHHHHHhcCCCCCH--hHHHHHHHHHccccc--
Q 002460 544 VDAQSIFNDIPA-------PDDVAWTTMISGCVDNGE----EDLALSIYHQMRLSGVVPDE--FTFAILVKASSCLTA-- 608 (919)
Q Consensus 544 ~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~-- 608 (919)
..|..+|+.|.+ ++..++.+|+.. ..++ .+++..+|+.+.+.|+..+. ...+.++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 344455555542 344455555443 2222 24566778888877776543 344444444433332
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhcHHH
Q 002460 609 LEQGRQIHANLIKLDCSSDPFVGISLV 635 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~~~~~~~~~~li 635 (919)
+..+.++++.+.+.|++.....|..+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHH
Confidence 446777788888888888777776443
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.82 E-value=5.5 Score=40.75 Aligned_cols=73 Identities=18% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChhHHHHHHHH
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMRE----KYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~y~~li~~ 739 (919)
++..+...|+.+.+.+.++++... .| |...|..++.+|...|+...|+..|+.+.+ ..|+.|...........
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 333444444444444444444442 23 444444444444444444444444444332 34666665555444443
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.68 E-value=2.5 Score=43.25 Aligned_cols=108 Identities=17% Similarity=0.064 Sum_probs=64.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 002460 701 LSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGD 777 (919)
Q Consensus 701 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 777 (919)
.+-|.++|.+++|+.+|.... .+.| +...|..-..+|.+..++..|+.=.... .+.. -.-.|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 345777888888888887654 3455 6666766777788888777776555443 1111 11123333333334477
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
..+|..-++.+++++|++. -|-..|++.....|+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI----ELKKSLARINSLRER 214 (536)
T ss_pred HHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhh
Confidence 7888888888888888743 334444444443333
No 302
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.22 E-value=29 Score=30.74 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=42.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGI 726 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 726 (919)
+.-+......|+-++-.+++.++.+. -+|++.....+..||.+.|...++.+++.+..++ |+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 34566677888888888888887653 3677778888888898999988888888888775 54
No 303
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.96 E-value=2 Score=29.88 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=21.9
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV 695 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 695 (919)
+|..+..+|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 455666777777777777777777777 356443
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.31 E-value=51 Score=32.75 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=93.0
Q ss_pred hcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---h---hHHHHHHHHH
Q 002460 631 GISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD---S---VTFIGVLSAC 704 (919)
Q Consensus 631 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~---~t~~~ll~a~ 704 (919)
++--..+|..+|.++.|-..+++.-+ ...+.++++|+++|++...- +.-+ . ..+..+-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhHh
Confidence 34456788889988877766665421 22445788888888887652 1111 1 1234444456
Q ss_pred hccCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHh
Q 002460 705 SYTGLVSEAYENFHLMREK---YGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM---P--FEA-SASMHRALLGACRV 774 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m---~--~~p-~~~~~~~ll~~~~~ 774 (919)
.+..++++|-..|.+-..- ..--|+ -..|-..|-.+.-..++..|+..++.- | ..| +..+...||.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 6677777776655443210 011122 123555555666778999999999884 3 122 456777888876 4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC
Q 002460 775 QGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 775 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 810 (919)
.||.++...++. +++...|-+.|...+
T Consensus 240 ~gD~E~~~kvl~---------sp~~r~MDneya~l~ 266 (308)
T KOG1585|consen 240 EGDIEEIKKVLS---------SPTVRNMDNEYAHLN 266 (308)
T ss_pred cCCHHHHHHHHc---------ChHhhhhhHHHHHHh
Confidence 588888777663 445555555555443
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.27 E-value=44 Score=31.27 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHhhcC
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVE-HYSFL--VDALGRAG 744 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~l--i~~~~r~g 744 (919)
+++.+..++|+.-|.++.+.|...=++ .-..........|+..+|...|+++-.+ .-.|... -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456778888898898888876443222 2222334567789999999999988765 3333322 11111 23456788
Q ss_pred CHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 745 RTKEAGELILSMPFE--A-SASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 745 ~~~eA~~~~~~m~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
.+++...-++-+..+ | ....-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888776322 2 234455676677788888888888887776
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.68 E-value=35 Score=31.08 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=50.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSMPFEA-SASMHRALLGACRVQGDTETGK 782 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~ 782 (919)
...++.+++..+++.|. -+.|+ .+.-.+-+..+.+.|+++||..++++....+ ....-.+|+..|..-..-..=.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 34778888888888875 45665 3333444556778888888888888884333 4455556666665443322233
Q ss_pred HHHHHHHhh
Q 002460 783 WVAEKLMAL 791 (919)
Q Consensus 783 ~~~~~~~~~ 791 (919)
.++.++++-
T Consensus 98 ~~A~~~le~ 106 (153)
T TIGR02561 98 VHADEVLAR 106 (153)
T ss_pred HHHHHHHHh
Confidence 344444443
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.64 E-value=18 Score=33.62 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 002460 437 CRNGSMAEAEYLFENKDGFDLATWNAMI-----FGYILSNNSHKALELFSHMHTSGERLDE 492 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 492 (919)
++.++.++|...|..+...+--+|-.|. ....+.|+...|+..|++.-.....|-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 4567778888888887776666665543 3456778888888888888765444433
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.37 E-value=3.4 Score=30.15 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPFDSSAYV 800 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 800 (919)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455678889999999999999999998765433
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.30 E-value=2 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=22.0
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD 693 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 693 (919)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 466777778888888888888888777 4554
No 310
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.08 E-value=64 Score=32.43 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCC---Cee---eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHh-
Q 002460 635 VDMYAKCGNIEDAYILFKQMDMR---NTV---LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDS--VTFIGVLSACS- 705 (919)
Q Consensus 635 i~~y~~~g~~~~A~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~- 705 (919)
+..-.+.|++++|.+.|+.+... +.. +--.++-++.+.+++++|+..+++.+.. .|++ .-|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHH
Confidence 33445689999999999999743 222 3344566788999999999999999884 4432 23444444433
Q ss_pred --ccC----CH---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002460 706 --YTG----LV---SEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQG 776 (919)
Q Consensus 706 --~~g----~~---~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 776 (919)
... +. .+|..-|+....+| |+. .--.+|..-+...... -+.-=.+...-|.++|
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr~ 181 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLNDA-LAGHEMAIARYYLKRG 181 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 221 22 23333444444432 221 1111111111110000 0000113344567777
Q ss_pred CHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 777 DTETGKWVAEKLMALEPFDSS---AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+.-|..-++.+++--|+.+. ++..|.++|...|..++|.+..+-+..
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777776555444 355566778888888888777655543
No 311
>PRK09687 putative lyase; Provisional
Probab=81.06 E-value=74 Score=33.09 Aligned_cols=131 Identities=8% Similarity=0.047 Sum_probs=63.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccc-cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHc
Q 002460 563 TMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLT-ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKC 641 (919)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 641 (919)
..+.++.+.+. ++|+..+-.+.+. +|...-...+.++.+.+ .-..+...+..+. ..++..+-..-+.++++.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHcc
Confidence 34444444443 4455555555542 23333333333333332 1122333322222 234555555566667777
Q ss_pred CCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 642 GNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 76433333333333333 234566777777774 677777777763 456655555555543
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.25 E-value=1.3e+02 Score=35.52 Aligned_cols=184 Identities=12% Similarity=0.001 Sum_probs=103.9
Q ss_pred hhhHHHHHHHhhcCCCchhhhHHHHHHHh----cCC-----CCCc-------chhhHHHHHHHhCCChhHHHHHhccCCC
Q 002460 53 SSQWFSILRHAISTSDLLLGKSTHARILN----SSQ-----IPDR-------FLTNNLMTMYSRCGSLVYARRLFDKMPD 116 (919)
Q Consensus 53 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~m~~ 116 (919)
.+..+++++++...+.+-.-..+...+.+ -+. ..|- -....-|+++.+..-++.|..+-..-.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~ 362 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHL 362 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCC
Confidence 34456677777766665444433333322 120 0111 1123456777777778888887765443
Q ss_pred CCcchHHHHHH---HHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCc
Q 002460 117 RDLISWNSILA---AYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIGLVWD 193 (919)
Q Consensus 117 ~~~~~~n~li~---~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~ 193 (919)
+....-+.+.. -+-+.| ++++|..-|-+-... +.| +.+++-+....++..-...++.+.+.|+. +
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kg-----df~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~ 430 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKG-----DFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-N 430 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-c
Confidence 32222333321 233566 899999888765421 222 34566666666666667777788888864 3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHhcCCCCCcee--HHHHHHHHHHcCCchHHHHHHH
Q 002460 194 EFVSGALVNIYSKFGKIREAKFLFDGMQERDVVL--WKVMLRAYAENGFGEEVFHLFV 249 (919)
Q Consensus 194 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~~l~~ 249 (919)
..--+.|++.|.|.++.+.-.+..+... ...+. ....+..+-+.+-.++|..+-.
T Consensus 431 ~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 431 SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred chhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 3345678999999999988888777665 22221 3334444444444444444433
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.04 E-value=1.9 Score=27.73 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=23.5
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.++..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 314
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.55 E-value=1.9 Score=44.45 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 742 RAGRTKEAGELILSM-PFEAS-ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 742 r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
..|.+++|++.+... +..|. ..++.--.+++.+.+....|++-+..+++++|+.+.-|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 467788888888775 44443 3444455566777788888999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCCCch
Q 002460 820 GEMKRKNVKKDPA 832 (919)
Q Consensus 820 ~~m~~~~~~~~~~ 832 (919)
....+.+.....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8887777665443
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.47 E-value=8.2 Score=37.10 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=54.1
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCchHHHHHHHHhhcCCcc
Q 002460 740 LGRAGRTKEAGELILSMPFEA--SASMHRALLGACRVQGDTETGKWVAEKLMALEPF----DSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~ 813 (919)
..|-|+ ++|...|-.+...| +....-..+..+....|.++++..+-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445554 56666666663333 3344445555666788999999999999987543 5778999999999999998
Q ss_pred hHH
Q 002460 814 DVT 816 (919)
Q Consensus 814 ~a~ 816 (919)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.37 E-value=29 Score=33.20 Aligned_cols=91 Identities=20% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC----hhHHHH
Q 002460 664 AMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGI--EPE----VEHYSF 735 (919)
Q Consensus 664 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~y~~ 735 (919)
.+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+..+..+...-..- .++ ...|..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 33444444444444444444444443333322 2344444455555555555444444332111 111 112222
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 002460 736 LVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m 756 (919)
|. +...+++.+|-+.|-..
T Consensus 121 L~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 121 LA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HH--HHHhchHHHHHHHHHcc
Confidence 22 22456777777666555
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.33 E-value=5.4 Score=40.61 Aligned_cols=103 Identities=9% Similarity=0.034 Sum_probs=73.2
Q ss_pred hcCCCCCcchhhHHHHHHHhCCChhHHHHHhccCCC-CCc-----chHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcC
Q 002460 81 NSSQIPDRFLTNNLMTMYSRCGSLVYARRLFDKMPD-RDL-----ISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESI 154 (919)
Q Consensus 81 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~-----~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g 154 (919)
..|...+..+-..++..-.....++++...+-+.++ |+. .+-.+.++-+.+- ++++++.++..=+.-|
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky------~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY------DPQKAIYTLVNPIQYG 130 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc------ChHHHHHHHhCcchhc
Confidence 345455555666677666666788888888877763 221 1222334444444 5888888888888889
Q ss_pred CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhC
Q 002460 155 TFTSRLTLAPLLKLCLSSGYVWASETVHGYALKIG 189 (919)
Q Consensus 155 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g 189 (919)
+.||.+|+..+|..+.+.++...|.++.-.|+...
T Consensus 131 iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888777654
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.22 E-value=1.5e+02 Score=34.98 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCC---Cch-HH-----HHHHHHhhcCCcchHHHHHHHH
Q 002460 775 QGDTETGKWVAEKLMALEPFD---SSA-YV-----LLSNIFAAANQWDDVTSARGEM 822 (919)
Q Consensus 775 ~g~~~~a~~~~~~~~~~~p~~---~~~-~~-----~l~~~y~~~g~~~~a~~~~~~m 822 (919)
.|++.+..........+.+.. ... |. .+.+.|...|+.++|...+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 577766555555555443322 222 21 4455677888888888877654
No 319
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=3.5 Score=47.70 Aligned_cols=129 Identities=15% Similarity=0.224 Sum_probs=86.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 002460 700 VLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTE 779 (919)
Q Consensus 700 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 779 (919)
+|.-+.+.|-.+-|+.+.+.=..++ ++...+|+++.|++...+.. +..+|..|......+||.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4555667777777776665444432 23457899999999988764 6789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch----HHHH-HHHHHHHHHHHhCCcccC
Q 002460 780 TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA----DLIF-AKVEGLIKRIKEGGYVPD 854 (919)
Q Consensus 780 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~----~~i~-~~l~~l~~~~~~~g~~p~ 854 (919)
.|+..+++... +.-|+-+|.-.|+.++ +.++|+-...+.+.. ..+| ..+++-..-++..|+.|-
T Consensus 690 IaEm~yQ~~kn--------fekLsfLYliTgn~eK---L~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~l 758 (1202)
T KOG0292|consen 690 IAEMCYQRTKN--------FEKLSFLYLITGNLEK---LSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPL 758 (1202)
T ss_pred HHHHHHHHhhh--------hhheeEEEEEeCCHHH---HHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccH
Confidence 99999987654 4456667777887664 444444333444443 1112 234455555667777765
Q ss_pred C
Q 002460 855 T 855 (919)
Q Consensus 855 ~ 855 (919)
.
T Consensus 759 a 759 (1202)
T KOG0292|consen 759 A 759 (1202)
T ss_pred H
Confidence 4
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.61 E-value=2.2 Score=25.72 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=18.4
Q ss_pred chHHHHHHHHhhcCCcchHHHHHH
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARG 820 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~ 820 (919)
.+...|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887764
No 321
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.00 E-value=3.6 Score=44.58 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=68.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcch
Q 002460 737 VDALGRAGRTKEAGELILSM-PFEASASMHRALL-GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDD 814 (919)
Q Consensus 737 i~~~~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 814 (919)
.+-+...+.++.|..++.++ ..+|+-+++.+.= .++.+.+++..|..=+.++++++|.....|+.-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34455677788888888775 6778665544433 567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002460 815 VTSARGEMK 823 (919)
Q Consensus 815 a~~~~~~m~ 823 (919)
|...++..+
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 998885443
No 322
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.86 E-value=20 Score=39.30 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCC-cchHHHHHHHH
Q 002460 746 TKEAGELILSM--PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQ-WDDVTSARGEM 822 (919)
Q Consensus 746 ~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-~~~a~~~~~~m 822 (919)
...-..++++. .+..|...|...+.-|.+.+.+.+-..++.+++...|+++..|+.-+.-...-+. .+.|..++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf--- 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF--- 163 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH---
Q ss_pred HhCCCCCCch---------HHHHHHHHHHHHHHHhCC
Q 002460 823 KRKNVKKDPA---------DLIFAKVEGLIKRIKEGG 850 (919)
Q Consensus 823 ~~~~~~~~~~---------~~i~~~l~~l~~~~~~~g 850 (919)
.+|++.+|. .--...++++..+-++.|
T Consensus 164 -lrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g 199 (568)
T KOG2396|consen 164 -LRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELG 199 (568)
T ss_pred -HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=76.79 E-value=1.4e+02 Score=33.89 Aligned_cols=120 Identities=11% Similarity=-0.018 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCH-HHHHHHHHH
Q 002460 695 VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP--FEASA-SMHRALLGA 771 (919)
Q Consensus 695 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~--~~p~~-~~~~~ll~~ 771 (919)
.+|...+.--...|+.+...-+|+.... -...-.+.|--.+.-+...|+.+-|..++.... ..|+. .+.-.-...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3566666666677777777777776643 122234556566666666677777776666541 12222 222222223
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHH
Q 002460 772 CRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVT 816 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 816 (919)
+-..||...|..+++.+.+--|..-.+-..-+++..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 455678888888888887655665555555566677777777776
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.73 E-value=12 Score=38.35 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=70.1
Q ss_pred cCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-CC---eeee--hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 002460 622 LDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-RN---TVLW--NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSV 695 (919)
Q Consensus 622 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~---~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 695 (919)
.|......+...+++.-....++++++..+-.... ++ ...| .+.+..+ -.-+.++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555555666666667788888887776652 21 1111 1122222 2336779999998888999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREK 723 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 723 (919)
|+..+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988877666553
No 325
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.71 E-value=13 Score=40.19 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=89.6
Q ss_pred HHhcCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 002460 669 LAQHGNGEETLK-LFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTK 747 (919)
Q Consensus 669 ~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~ 747 (919)
-...|+...|-+ +|.-+...--.|+.+-..+.+ ..+.|.++.+.+.+..... -+.....+..|++..+.+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 345677766655 555555544456655554444 6889999999998877654 34456778899999999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 748 EAGELILSM-PFE-ASASMHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 748 eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
+|..+-..| +.+ .++.+...-.......|-++++...+++++.++|..
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999999887 222 244555555555677789999999999999998763
No 326
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.54 E-value=2.1e+02 Score=35.71 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=66.0
Q ss_pred CCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 002460 626 SDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACS 705 (919)
Q Consensus 626 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 705 (919)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444444444433211 12233344445555544555555555443221 11222 1344444444445555
Q ss_pred ccCCHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002460 706 YTGLVSE-AYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWV 784 (919)
Q Consensus 706 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 784 (919)
..+..+. +...+..+.. .++...-...+..++..|..+.+...+..+-..++..+-...+.++...+. +.+...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5444322 2233333322 255666666666666666654443333333234555444455555554443 234444
Q ss_pred HHHHH
Q 002460 785 AEKLM 789 (919)
Q Consensus 785 ~~~~~ 789 (919)
+..++
T Consensus 843 L~~~L 847 (897)
T PRK13800 843 LVEAL 847 (897)
T ss_pred HHHHh
Confidence 44444
No 327
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.58 E-value=47 Score=27.84 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHH
Q 002460 533 ILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFA 597 (919)
Q Consensus 533 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 597 (919)
-+..+...|++++|..+.+.+..||...|-+|-. -+.|..+++..-+.+|-.+| .|...+|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678899999999999999999999988765 46777787777787887776 45555554
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.52 E-value=3.6 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.7
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
.++..|+.+|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356788888999999999988887654
No 329
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.36 E-value=8.3 Score=37.15 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
|-..|-..-|.-=|.+.+. +.|+.. .|+.|.--+...|+++.|.+.|+..
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 3344444444444555444 455443 4444444455555555555555555
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.85 E-value=9.1 Score=39.40 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc-
Q 002460 666 LVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA- 743 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~- 743 (919)
.+-|.++|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..=.+....- -...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 3569999999999999999887 678 9999999999999998888777655554331 12345566655
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHH
Q 002460 744 ------GRTKEAGELILSM-PFEASAS 763 (919)
Q Consensus 744 ------g~~~eA~~~~~~m-~~~p~~~ 763 (919)
|+.+||.+=++.. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4555555555443 5677643
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.51 E-value=5.5 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 765 HRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 765 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
|..+...+...|+++.|...+++.++++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555566666666666655555
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.45 E-value=29 Score=33.20 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=10.2
Q ss_pred HcCCHHHHHHHHHhCC
Q 002460 640 KCGNIEDAYILFKQMD 655 (919)
Q Consensus 640 ~~g~~~~A~~~~~~~~ 655 (919)
..|++.+|-+.|-...
T Consensus 125 ~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSL 140 (177)
T ss_pred HhchHHHHHHHHHccC
Confidence 3567777777666554
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.29 E-value=4.2 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.5
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 797 SAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 797 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
No 334
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.23 E-value=1e+02 Score=31.68 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=67.8
Q ss_pred hhHHHHHHHhCCChhHHHHHhccCCC-----CCcchHHHHHHHHHh-cCCCCCCChhHHHHHHHHHHhcCCCCCcccHHH
Q 002460 91 TNNLMTMYSRCGSLVYARRLFDKMPD-----RDLISWNSILAAYAH-SGEGNAENVTEGFRLFRSLRESITFTSRLTLAP 164 (919)
Q Consensus 91 ~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~n~li~~~~~-~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ 164 (919)
|..|+ .++.-+-+|.++|+.... .|...-..+++.... .+. ..+.+-|.+.++. .+.|-.++..+...
T Consensus 134 Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-~l~alYEvV~~l~--~t~~~~l~~~vi~~ 207 (292)
T PF13929_consen 134 YWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-KLNALYEVVDFLV--STFSKSLTRNVIIS 207 (292)
T ss_pred HHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-chhhHHHHHHHHH--hccccCCChhHHHH
Confidence 44554 234456788888885322 133333334444443 220 0012223333222 23346677777778
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCChhHHHHHHh
Q 002460 165 LLKLCLSSGYVWASETVHGYALKI-GLVWDEFVSGALVNIYSKFGKIREAKFLFD 218 (919)
Q Consensus 165 ll~~~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 218 (919)
+|+.++..+++..-.+++...... +...|...|..+|+...+.|+..-.+++.+
T Consensus 208 Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 208 ILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888888888887777777766655 555566666666666666666655555544
No 335
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.77 E-value=21 Score=29.86 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHHH
Q 002460 174 YVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHR 253 (919)
Q Consensus 174 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 253 (919)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456677777777665532 44444445566778999999999999999999999988754 467877888888888877
Q ss_pred CC
Q 002460 254 SG 255 (919)
Q Consensus 254 ~g 255 (919)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 66
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.77 E-value=19 Score=29.92 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 002460 753 ILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 753 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 792 (919)
+-.+..-|++.+..+-|.||++-+|+..|.++++-+...-
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 3344678999999999999999999999999998766443
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.46 E-value=21 Score=29.95 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=30.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 753 ILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 753 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
+-.+..-|++.+..+.|.+|++-+|+..|.++++-+...-.
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 33446779999999999999999999999999987765544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.92 E-value=3.7 Score=26.01 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
++..++.+|...|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667888999999999999999887653
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.77 E-value=2.3e+02 Score=34.01 Aligned_cols=215 Identities=10% Similarity=0.105 Sum_probs=116.0
Q ss_pred HHcCCHHHHHHHhccCC----CCCh-------hhHHHHHHH-HHHcCChhHHHHHHHHHHhc----CCCCCHhHHHHHHH
Q 002460 538 VKCGAMVDAQSIFNDIP----APDD-------VAWTTMISG-CVDNGEEDLALSIYHQMRLS----GVVPDEFTFAILVK 601 (919)
Q Consensus 538 ~~~g~~~~A~~~f~~m~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 601 (919)
....++++|..+..+.. .++. ..|+++-.- ....|++++|+++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667777777766543 2222 256665432 34567888888887776553 22344455666666
Q ss_pred HHcccccHHHHHHHHHHHHHcCCCCCchhhcHHH-----HHHHHcCCHH--HHHHHHHhCC-----CCCe-----eeehH
Q 002460 602 ASSCLTALEQGRQIHANLIKLDCSSDPFVGISLV-----DMYAKCGNIE--DAYILFKQMD-----MRNT-----VLWNA 664 (919)
Q Consensus 602 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~y~~~g~~~--~A~~~~~~~~-----~~~~-----~~~~~ 664 (919)
+..-.|++++|..+.+...+..-..+...+.... ..+...|+.. +.+..|.... .... .++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888999888887776654444444443322 2344566333 2333333322 1112 23333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCChh----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHG--VEPDSV----TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE----VEHYS 734 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~ 734 (919)
+..++.+ .+.+..-...-.+-| ..|... .+..|.......|+.++|....+++..- ...++ -..-.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~ 661 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHH
Confidence 3444443 333333333222221 123222 2235666777889999999998888764 33332 11222
Q ss_pred HHHH--HHhhcCCHHHHHHHHHhC
Q 002460 735 FLVD--ALGRAGRTKEAGELILSM 756 (919)
Q Consensus 735 ~li~--~~~r~g~~~eA~~~~~~m 756 (919)
+.+. ....+|+.++|.....+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222 334778988888877663
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.71 E-value=8.3 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 767 ALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 767 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555677789999999999999998885
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.30 E-value=2.2e+02 Score=33.62 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=17.8
Q ss_pred CcchhhhHhH--hhhhcCChhhHHHHHHHHH
Q 002460 296 NVVLWNKKLS--GYLQVGDNHGAIECFVNMI 324 (919)
Q Consensus 296 ~~~~~n~li~--~~~~~g~~~~A~~l~~~m~ 324 (919)
...+|..++. .+...|+++.+...++++.
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555544 4456777777777776665
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.79 E-value=27 Score=29.07 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002460 675 GEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVD 738 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 738 (919)
.-++.+-++.+....+-|++....+.|.||.+.+++.-|.++|+..+.+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3455666667777778899999999999999999999999999988764 3334556766654
No 343
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.56 E-value=22 Score=35.18 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHH-------HHHHHHHHhhCC--C----CCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCC
Q 002460 762 ASMHRALLGACRVQGDTETG-------KWVAEKLMALEP--F----DSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVK 828 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a-------~~~~~~~~~~~p--~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 828 (919)
+.++.-+.|.|+..|+.+.. ...++++++.+. . ......++|.++.+.|+.++|.+.+.++...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 34666777888888885554 444445554332 1 2345678999999999999999999988765433
No 344
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.38 E-value=4.5 Score=26.28 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHH
Q 002460 730 VEHYSFLVDALGRAGRTKEAG 750 (919)
Q Consensus 730 ~~~y~~li~~~~r~g~~~eA~ 750 (919)
...|..+..+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555666666665554
No 345
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=70.07 E-value=98 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002460 416 HAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLF 449 (919)
Q Consensus 416 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~f 449 (919)
.+.+.++.++...+..+|+.+.+.|++..-..++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445566666666666666666666655544444
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.55 E-value=34 Score=37.07 Aligned_cols=142 Identities=14% Similarity=0.053 Sum_probs=88.3
Q ss_pred HHHcCCHHHHHH-HHHhCC----CCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 002460 638 YAKCGNIEDAYI-LFKQMD----MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSE 712 (919)
Q Consensus 638 y~~~g~~~~A~~-~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 712 (919)
-...|++-.|.+ +|..+. .|+.+...+ ..+...|+++.+...+...... +-....+...++...-..|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344677776644 444443 234333333 3456789999999998877653 44566788889999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH--HHhcCC-HHHHHHH
Q 002460 713 AYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALLGA--CRVQGD-TETGKWV 784 (919)
Q Consensus 713 a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~~--~~~~g~-~~~a~~~ 784 (919)
|...-+-|..+ .++ +.+....-...--..|-++++.-.+++. . ..|...-|-.++.. |...|+ +.+|..+
T Consensus 376 a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~ 450 (831)
T PRK15180 376 ALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHA 450 (831)
T ss_pred HHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHh
Confidence 99998888764 443 2232222222223457789998888886 2 34555666666655 344444 3444333
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.38 E-value=1.9 Score=39.59 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHH
Q 002460 600 VKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFK 652 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 652 (919)
+..+.+.+.++....+++.+.+.+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444444444444555555544444445555556666665554444444444
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.22 E-value=27 Score=29.37 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDA 739 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 739 (919)
+..+-++.+....+.|++.+..+.|.||.+.+++.-|.++|+..+.+- .+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHHH
Confidence 455556666667788999999999999999999999999999998753 3444477777653
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.85 E-value=77 Score=36.79 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhc-CCcchHHHHHHHHHhCCC
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAA-NQWDDVTSARGEMKRKNV 827 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~~ 827 (919)
+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 5566666666666655 244444444443332 666666666655555554
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.71 E-value=1.2e+02 Score=29.20 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=66.2
Q ss_pred CChhHHHHHH-----HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 728 PEVEHYSFLV-----DALGRAGRTKEAGELILSMPFEASASMHRAL-----LGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 728 p~~~~y~~li-----~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+...+|..+. ..+..+|++++|+.-++..--.|....+.++ .......|.++.|...++...+-.= .+.
T Consensus 82 n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~ 160 (207)
T COG2976 82 NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAI 160 (207)
T ss_pred ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHH
Confidence 4345565544 4567889999999999875334433334433 3445667888888877664433111 122
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 798 AYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 798 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
...+-+.++...|+-++|..-|+...+.+
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 35578899999999999999999888876
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.65 E-value=12 Score=25.10 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 763 SMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 763 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
.+++.|...+...|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777777653
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=38 Score=33.53 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch--HHHHHHHHHHHHHHHh
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA--DLIFAKVEGLIKRIKE 848 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~--~~i~~~l~~l~~~~~~ 848 (919)
...|++=++++.-..++...|.|..+|..-+.+.+..=+-++|..=+....+. +|. .-...+|.-+..++.+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l----dpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL----DPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----ChhhHHHHHHHHHHHHHHHHH
Confidence 45588888899999999999999999999999888777777777666555443 343 4555666666666653
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=63 Score=36.45 Aligned_cols=145 Identities=17% Similarity=0.069 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHhccCCHHHHHHHHHH
Q 002460 641 CGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVT-FIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
.|+++.|..++..++++ ..+.++.-+-+.|..++|++ +.||..- |-.. .+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHHh
Confidence 45666666555555422 23344444555555555544 2343332 2222 345777777665443
Q ss_pred hHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 002460 720 MREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAY 799 (919)
Q Consensus 720 m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 799 (919)
. -+..-|..|.++...+|++..|.+.+.+.. -|..|+-.+...|+-+.-..+.....+... .
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-----~ 724 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-----N 724 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-----c
Confidence 3 234457777777777777777777776643 245555555555665543333333333222 2
Q ss_pred HHHHHHHhhcCCcchHHHHH
Q 002460 800 VLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 800 ~~l~~~y~~~g~~~~a~~~~ 819 (919)
++--..|...|++++..+++
T Consensus 725 N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred chHHHHHHHcCCHHHHHHHH
Confidence 23334566677777776665
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=66.23 E-value=1.7e+02 Score=30.26 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChhHHHH
Q 002460 524 ELDLCVSSGILDMYVKCGAMVDAQSIFNDIP-----APDDVAWTTMISGCVDNGEEDLALS 579 (919)
Q Consensus 524 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~ 579 (919)
.++..+....+..+++.+++.+-.++++... ..|...|...|..-.+.|+..-..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 4555555566666666666666666655432 2466677777777777776654333
No 355
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.17 E-value=1.6e+02 Score=30.17 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=45.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 002460 422 TVADSFVSTALIDVYCRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKA 501 (919)
Q Consensus 422 ~~~d~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 501 (919)
...|+.....+...|.+.|++.+|+.-|-....++...+-.++.-+...|...++ |.+.-. .+--
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~ 150 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQ 150 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHH
Confidence 3457888889999999999999999888655444433333344433334443333 111112 2223
Q ss_pred HhccCchHHHHHHHHHHHH
Q 002460 502 CGCLLMLKQGKQMHAYAMK 520 (919)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~ 520 (919)
+...+++..|...+....+
T Consensus 151 yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4455667777766655443
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.03 E-value=1.5e+02 Score=29.81 Aligned_cols=184 Identities=9% Similarity=0.035 Sum_probs=84.8
Q ss_pred CHHHHHHHHHhCCC--C-----CeeeehHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC--ChhHHHHHHHHHhccCCH
Q 002460 643 NIEDAYILFKQMDM--R-----NTVLWNAMLVGLAQHGNGEETLKLFEDMKAH---GVEP--DSVTFIGVLSACSYTGLV 710 (919)
Q Consensus 643 ~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p--~~~t~~~ll~a~~~~g~~ 710 (919)
++++|+.-|+++.+ + ...+...+|..+.+.|++++.++.|.+|+.- .+.- ...+.++++.--+.....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45566655555431 1 1123344566666666766666666666431 1111 223455555554444444
Q ss_pred HHHHHHHHHhHHhc----CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHH
Q 002460 711 SEAYENFHLMREKY----GIEPEVEHYSFLVDALGRAGRTKEAGELILSMP-------FEAS-------ASMHRALLGAC 772 (919)
Q Consensus 711 ~~a~~~~~~m~~~~----~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~-------~~p~-------~~~~~~ll~~~ 772 (919)
+--.++++.-.+.. +-..--.+-.-|..+|...|.+.+-.++++.+. -+.| ..+|..=+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 44444443322211 111111223345555555555555555554431 0011 12333344445
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHH------HHHHHHhhcCCcchHHH-HHHHHHhCC
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYV------LLSNIFAAANQWDDVTS-ARGEMKRKN 826 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~------~l~~~y~~~g~~~~a~~-~~~~m~~~~ 826 (919)
..+++-..-..++++++.+..--|.+.. .=+.++.+.|+|++|.. .|+..+...
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 5556666666667766665432222211 11234556677777653 455555443
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.17 E-value=27 Score=28.93 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 782 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
...+++.++.+|+|..+-..|+..|...|++++|.+.+-.+..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45567778888998888889999999999999998876665544
No 358
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.11 E-value=87 Score=30.12 Aligned_cols=58 Identities=14% Similarity=-0.017 Sum_probs=32.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 002460 738 DALGRAGRTKEAGELILSM-PFEASAS-MHRALLGACRVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 738 ~~~~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
.++.+.+.++.|++-..+. .+.|... ...--..+|-+...++.|..-++++++++|..
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 3444555555555444433 3333211 11111224555577889999999999999963
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.84 E-value=13 Score=22.36 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=12.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 002460 734 SFLVDALGRAGRTKEAGELIL 754 (919)
Q Consensus 734 ~~li~~~~r~g~~~eA~~~~~ 754 (919)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 360
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.77 E-value=2.5e+02 Score=31.39 Aligned_cols=171 Identities=12% Similarity=0.039 Sum_probs=106.1
Q ss_pred CCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 002460 625 SSDPFVGISLVDMYAKCGNIEDAYILFKQMDM--RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLS 702 (919)
Q Consensus 625 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 702 (919)
..|....-++++.++..-++.-.+.+..+|.. .+-..+-.++.+|..+ ..++-..+|+++.+. .-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 34444555677777777777777777777763 4556777888888888 557778888888874 445555555555
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPE------VEHYSFLVDALGRAGRTKEAGELILSM----PFEASASMHRALLGAC 772 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~y~~li~~~~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~ 772 (919)
-+...++.+.+..+|.++..+ +.|. .+.|.-|+...+ .+.+..+.+..+. +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 455558888888888888763 4442 345665554332 3444555555444 2222223333333445
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
....|+++|.++++.+++.+..|.-+--.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 566788888888888888877665444333
No 361
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.62 E-value=19 Score=36.63 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=37.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 002460 741 GRAGRTKEAGELILSM-PFEASA-SMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVL 801 (919)
Q Consensus 741 ~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 801 (919)
-++|+.++|..+|+.. .+.|+. .+.--+....-.+++.-+|...+-+++.++|.|+.+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4677777777777653 445533 333333333445567777777777777777777666553
No 362
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=63.38 E-value=1.5e+02 Score=33.48 Aligned_cols=99 Identities=20% Similarity=0.126 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch-HHHHHHHHhhc
Q 002460 731 EHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA-YVLLSNIFAAA 809 (919)
Q Consensus 731 ~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~y~~~ 809 (919)
..-.||-+-+....++.-|.++-++-++. ....|.+..-+|.+.+++..|+.-+++++++..+|..- ..-+.|. ...
T Consensus 557 ~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~-ieG 634 (1141)
T KOG1811|consen 557 AASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL-IEG 634 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh-hcC
Confidence 34556667777777788888887776543 34689999999999999999999999999987665443 3334333 344
Q ss_pred CCcchHHHHHHHHHhCCCCCCch
Q 002460 810 NQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 810 g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
|-..++..++ +|.+.-.++.|.
T Consensus 635 gpp~dVq~Vr-em~dhlak~apt 656 (1141)
T KOG1811|consen 635 GPPRDVQDVR-EMLDHLAKPAPT 656 (1141)
T ss_pred CCcchHHHHH-HHHHHhccCCcc
Confidence 4344444443 455555666554
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.11 E-value=59 Score=29.10 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHh-hCCCCCch-HHHHHHHHhhcCCcchHHHHHHHHH
Q 002460 778 TETGKWVAEKLMA-LEPFDSSA-YVLLSNIFAAANQWDDVTSARGEMK 823 (919)
Q Consensus 778 ~~~a~~~~~~~~~-~~p~~~~~-~~~l~~~y~~~g~~~~a~~~~~~m~ 823 (919)
+.++..+++.+.+ -.|+...- ...|+-.|++.|+|+.+.++.+.+.
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555543 22322222 2233444555555555555554443
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.87 E-value=1.6e+02 Score=28.92 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=78.2
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE----VEHYSF 735 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 735 (919)
+.+.-|+.+.+.+...+|+...++-++. +| |..+-..++..++-.|++++|..-++...+ +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3455677888889999999998887775 56 555666778889999999999988776643 3443 556666
Q ss_pred HHHHHhhcCCHHHHH-HHHHhC--C---CCCCHHHHH-HHHHHHHhc--CCHHHHHHHHHHHHhhCCCCCc
Q 002460 736 LVDALGRAGRTKEAG-ELILSM--P---FEASASMHR-ALLGACRVQ--GDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 736 li~~~~r~g~~~eA~-~~~~~m--~---~~p~~~~~~-~ll~~~~~~--g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+|+. +.+. ++|..- | ..|. ..|- .|+.+..-| |.-+.+....+++++--|..++
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~-p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPS-PEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCC-HHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 6643 2233 233321 2 1233 3444 444443333 4555567777788887775443
No 365
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.79 E-value=1.3e+02 Score=34.98 Aligned_cols=181 Identities=18% Similarity=0.268 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhH----------HHHHHHHHcccccHHHHHHHHHHHHH-cC-CCCC
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFT----------FAILVKASSCLTALEQGRQIHANLIK-LD-CSSD 627 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~~~~~~a~~~~~~~~~-~~-~~~~ 627 (919)
+-..|+-.|....+++..+++.+.++.. ||..- |.-.++---+.|+-++|..+.--+.+ .| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3345566677777777777777777653 43321 22223333345666666665544433 22 2232
Q ss_pred chhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH---HHHHHHHH
Q 002460 628 PFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVT---FIGVLSAC 704 (919)
Q Consensus 628 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 704 (919)
+||-||++ |+.|- +-+.|...+..+.|.+.|++..+ ++|+... +..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 45555543 22222 12234445566778888888877 6776543 44444332
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWV 784 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 784 (919)
.+ .++...++ +.+ | -.|-.+++|.|.++.-.+.++- .+.+.+..-.+|+.+|..+
T Consensus 334 G~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 21 12222211 111 1 1244567889988877766653 2355666677899999999
Q ss_pred HHHHHhhCCC
Q 002460 785 AEKLMALEPF 794 (919)
Q Consensus 785 ~~~~~~~~p~ 794 (919)
+++++++.|.
T Consensus 389 ae~mfKLk~P 398 (1226)
T KOG4279|consen 389 AEMMFKLKPP 398 (1226)
T ss_pred HHHHhccCCc
Confidence 9999999874
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.78 E-value=1e+02 Score=33.64 Aligned_cols=120 Identities=13% Similarity=0.016 Sum_probs=63.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHhhcC
Q 002460 670 AQHGNGEETLKLFEDMKAHGVEPDSV--TFIGVLSACSY--TGLVSEAYENFHLMREKYGI-EPEVEHYSFLVDALGRAG 744 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~-~p~~~~y~~li~~~~r~g 744 (919)
...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++........ .-....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3677888889999888886 555554 34444444443 45677888888877653111 011233444443333322
Q ss_pred CHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 002460 745 RTKEAGELILSMPFEASA-SMHRALLGACR--VQGDTETGKWVAEKLMA 790 (919)
Q Consensus 745 ~~~eA~~~~~~m~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 790 (919)
.+....+....-..++.. .+..-+.++-+ ..|+++.|..-+-+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222222222221112222 34444555554 35888888776666665
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.49 E-value=99 Score=33.52 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHh-hcCCcchHHHHHHHHH
Q 002460 769 LGACRVQGDTETGKWVAEKLMALEPF-DSSAYVLLSNIFA-AANQWDDVTSARGEMK 823 (919)
Q Consensus 769 l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~ 823 (919)
+....+.|-+..|.+..+-++.++|. ||-.-.+.+..|+ ++++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34567778999999999999999998 7777677777666 5566665555555443
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.31 E-value=3.6e+02 Score=32.85 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcch-----HHHHHH---HHHhCCChhHHHHHHHHHHH
Q 002460 429 STALIDVYCRNGSMAEAEYLFENKDGFDLAT-----WNAMIF---GYILSNNSHKALELFSHMHT 485 (919)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~---~~~~~g~~~~A~~~~~~m~~ 485 (919)
+..-+..+....++++|..+-+....+++.. ...+.. -+..+|++++|++.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 4455566666667888888887766554432 222222 25668899999999998864
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.16 E-value=3.5e+02 Score=31.40 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcC---CcchHHHHHHHHH
Q 002460 777 DTETGKWVAEKLMALEPFDSSAYVLLSNIFAAAN---QWDDVTSARGEMK 823 (919)
Q Consensus 777 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---~~~~a~~~~~~m~ 823 (919)
+.+.|-..+.++-+.. +.....|+.+|...- ++..|.++++...
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 4555555555555443 445555555554321 1445555554443
No 370
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.88 E-value=2e+02 Score=28.55 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHH---HHhhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHH--HHHhc
Q 002460 708 GLVSEAYENFHLMREKYGIEP-EVEHYSFLVD---ALGRAGRTKEAGELILSM---PFEASASMHR---ALLG--ACRVQ 775 (919)
Q Consensus 708 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~---~~~r~g~~~eA~~~~~~m---~~~p~~~~~~---~ll~--~~~~~ 775 (919)
.+++.|+..|+..-+=|..+- +...--|++. .-+..+++.+|.+++++. ....+..-|. .++. .|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456667777766655333222 2333334443 334678899999998876 2222222222 2332 35444
Q ss_pred -CCHHHHHHHHHHHHhhCCCCCch--HHHHHHHHh
Q 002460 776 -GDTETGKWVAEKLMALEPFDSSA--YVLLSNIFA 807 (919)
Q Consensus 776 -g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~y~ 807 (919)
.|.--+..++++-.+++|.-..+ +..|-.+..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 78888999999999999975544 444444433
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.62 E-value=2.8e+02 Score=30.07 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred ChhHHHHH---HHHHhccCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--------
Q 002460 693 DSVTFIGV---LSACSYTGLVSEAYENFHLMREKYGIEP--EVEHYSFLVDALG-RAGRTKEAGELILSMPF-------- 758 (919)
Q Consensus 693 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~-r~g~~~eA~~~~~~m~~-------- 758 (919)
|...|.++ +..+.+.|-+..|.++.+-+. .+.| |+..-..+||.|+ |+++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 34444444 456788899999999888875 4555 4556666777776 77888877787776422
Q ss_pred -CCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhCC
Q 002460 759 -EASASMHRALLGACRVQGDT---------------ETGKWVAEKLMALEP 793 (919)
Q Consensus 759 -~p~~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~p 793 (919)
-|+. .+..-| ++...++. +.|...+++++..-|
T Consensus 176 ~lPn~-a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPNF-AFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCccH-HHHHHH-HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 1222 222223 33334444 889999999988877
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.40 E-value=75 Score=30.76 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHhhcCCHHHH
Q 002460 676 EETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYG--IEPEVEHYSFLVDALGRAGRTKEA 749 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~y~~li~~~~r~g~~~eA 749 (919)
+.|.+.|-++...+.--+......|...|. .-+.++++.++....+-+. -.++++.+..|+..+-+.|++++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554433223223333333333 4455555555555544221 134455555555555555555554
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.12 E-value=69 Score=32.56 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
..+=.++...++++.|..+.++++.++|+|+.-..--+-+|...|-..-|.+-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344456778899999999999999999999998899999999999999999888765544
No 374
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.26 E-value=2.8e+02 Score=30.00 Aligned_cols=181 Identities=16% Similarity=0.192 Sum_probs=89.0
Q ss_pred hhcHHHHHHHHcCCHHHHHHHHHhCCCC------CeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 002460 630 VGISLVDMYAKCGNIEDAYILFKQMDMR------NTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSA 703 (919)
Q Consensus 630 ~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 703 (919)
.+.-+.+.|..||+++.|.+.|-+..+- -+..|-.+|..-.-.|+|......-.+..+ .|+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s---t~~~--------- 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES---TPDA--------- 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh---Cchh---------
Confidence 3445888999999999999999885421 222344444444455566555555555443 1210
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHH
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSMP---------FEA-SASMHRALLGACR 773 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~---------~~p-~~~~~~~ll~~~~ 773 (919)
+..... .+.+....+..|..+..+ +++.|...+-..+ +.| |..+|. .+.+..
T Consensus 220 -------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALA 281 (466)
T KOG0686|consen 220 -------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALA 281 (466)
T ss_pred -------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhc
Confidence 111111 334445555555555544 5555555444331 123 233333 233322
Q ss_pred hcC--CHH---HHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHh
Q 002460 774 VQG--DTE---TGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPADLIFAKVEGLIKRIKE 848 (919)
Q Consensus 774 ~~g--~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~~i~~~l~~l~~~~~~ 848 (919)
..+ ++. .....++..++++|+ ....|...|. +++..-.+++++++.+- -.+ -.+...+..|...+++
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy~--sky~~cl~~L~~~k~~l-lLD--~yLaphVd~Ly~~IR~ 353 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFYS--SKYASCLELLREIKPRL-LLD--MYLAPHVDNLYSLIRN 353 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHhh--hhHHHHHHHHHHhccce-eec--hhcchhHHHHHHHHHH
Confidence 222 222 123456677777764 3444444443 45665555555554321 111 2233444555555544
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.74 E-value=2.5e+02 Score=28.85 Aligned_cols=81 Identities=22% Similarity=0.179 Sum_probs=43.5
Q ss_pred CCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH--HHHHHH
Q 002460 626 SDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTF--IGVLSA 703 (919)
Q Consensus 626 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a 703 (919)
-++.....+...|.+.|++.+|+.-|-.-..++...+-.++.- . ...|-+.+...| ..++ -
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~---------------~-~~~~~~~e~dlfi~RaVL-~ 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEE---------------W-STKGYPSEADLFIARAVL-Q 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---------------H-HHHTSS--HHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHH---------------H-HHhcCCcchhHHHHHHHH-H
Confidence 3566777788999999999999888754433322222112211 1 122222222222 2233 3
Q ss_pred HhccCCHHHHHHHHHHhHHh
Q 002460 704 CSYTGLVSEAYENFHLMREK 723 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~ 723 (919)
|...|++..|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 55678888888888777654
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.69 E-value=1e+02 Score=31.38 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh-
Q 002460 666 LVGLAQHGNGEETLKLFEDMKA--HGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR- 742 (919)
Q Consensus 666 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r- 742 (919)
|.+++..+++.+++...-+--+ +.++|.. .-.-|--|++.|....+.++-..-... .-.-+..-|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5677777777777665444332 1133333 233334478888888877776666554 111224447777776654
Q ss_pred ----cCCHHHHHHHHHhC
Q 002460 743 ----AGRTKEAGELILSM 756 (919)
Q Consensus 743 ----~g~~~eA~~~~~~m 756 (919)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 58999999988543
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.17 E-value=89 Score=26.67 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=57.1
Q ss_pred cCCChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHH
Q 002460 171 SSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVD 250 (919)
Q Consensus 171 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~ 250 (919)
.....++|..|.+++...+- ....+.-..+..+.+.|++++|...=.....||.++|-+|-. .+.|..+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34567788888888888774 444555556677788999999965555666799999987744 578888888888888
Q ss_pred HHHCC
Q 002460 251 LHRSG 255 (919)
Q Consensus 251 m~~~g 255 (919)
+-..|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 86655
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.84 E-value=33 Score=22.66 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 002460 764 MHRALLGACRVQGDTETGKWV--AEKLMALEPFD 795 (919)
Q Consensus 764 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~~ 795 (919)
-|-++...+...|+.++|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666677778888888888 44777777654
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.98 E-value=43 Score=37.49 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=10.1
Q ss_pred HHHHHHHH-cCCchHHHHHHHH
Q 002460 230 VMLRAYAE-NGFGEEVFHLFVD 250 (919)
Q Consensus 230 ~li~~~~~-~g~~~~A~~l~~~ 250 (919)
.+.+.|.+ .|+..+|+.....
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~ 238 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMR 238 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHH
Confidence 34444444 3555555555444
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.36 E-value=24 Score=21.91 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 776 GDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 776 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56778888888888888877777765543
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.11 E-value=33 Score=27.35 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGEL 752 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~ 752 (919)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655554222222 23455566666666666665554
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.65 E-value=51 Score=30.08 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=58.1
Q ss_pred hhhHHHHHHHhCCChhHHHHHhccCC---------CCCcchHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHhcCCCCCc
Q 002460 90 LTNNLMTMYSRCGSLVYARRLFDKMP---------DRDLISWNSILAAYAHSGEGNAEN-VTEGFRLFRSLRESITFTSR 159 (919)
Q Consensus 90 ~~~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~n~li~~~~~~g~~~~~~-~~~A~~~~~~m~~~g~~p~~ 159 (919)
..|.+++-.+..+++.....+++.+. ..+-.+|++++.+.++.. . ---+..+|.-|.+.+.+++.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs-----SaK~~~~~Lf~~Lk~~~~~~t~ 115 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS-----SAKLTSLTLFNFLKKNDIEFTP 115 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh-----HHHHHHHHHHHHHHHcCCCCCH
Confidence 35777777777777777777777664 235568999999987766 3 45667788888888888888
Q ss_pred ccHHHHHHHhhcC
Q 002460 160 LTLAPLLKLCLSS 172 (919)
Q Consensus 160 ~t~~~ll~~~~~~ 172 (919)
.-|..++++|.+-
T Consensus 116 ~dy~~li~~~l~g 128 (145)
T PF13762_consen 116 SDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHcC
Confidence 8899998887653
No 383
>PRK10941 hypothetical protein; Provisional
Probab=52.45 E-value=81 Score=32.46 Aligned_cols=68 Identities=12% Similarity=-0.078 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 735 FLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 735 ~li~~~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.+-.+|.+.++++.|+...+.+ .+.| ++.-|+--.-.+.+-|....|..-++..++..|++|.+-..-
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3556677888888888888776 4455 455666666677788888888888888888888877665543
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=1.1e+02 Score=34.78 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=53.4
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHH
Q 002460 437 CRNGSMAEAEYLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHA 516 (919)
Q Consensus 437 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 516 (919)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+.+. |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3445566665554332 2455677777777777777777777776643 4455555555565554444444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhc
Q 002460 517 YAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFN 551 (919)
Q Consensus 517 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 551 (919)
...+.|. . |.-.-+|...|+++++.+++.
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 4444442 1 112223444555555555543
No 385
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.05 E-value=1.6e+02 Score=29.21 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=79.0
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCCCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcC
Q 002460 93 NLMTMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSS 172 (919)
Q Consensus 93 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 172 (919)
.-+..|++.-++.-|...++++.+|= .|--+ |--|.+-. +.+---++.+-....++.-+..-..+++ +...
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPI-QSRCA-iLRyskls-----d~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPI-QSRCA-ILRYSKLS-----DQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhH-HhhhH-hhhhcccC-----HHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 44566777777777777776666541 11111 22233322 2222222333333445555544444443 3345
Q ss_pred CChhhHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHHHHHHHH
Q 002460 173 GYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLH 252 (919)
Q Consensus 173 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 252 (919)
||+..|...++.-.. -- .+-.++.+|+-.-+|....--.|+..+ ..+++++|.++|.++.
T Consensus 206 GDMRQalNnLQst~~------------------g~-g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVN------------------GF-GLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELW 265 (333)
T ss_pred chHHHHHHHHHHHhc------------------cc-cccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 666655544433221 11 123456677777777777667777654 4578999999999999
Q ss_pred HCCCCCChhh
Q 002460 253 RSGLCPDDES 262 (919)
Q Consensus 253 ~~g~~p~~~t 262 (919)
+.|..|....
T Consensus 266 ~lgysp~Dii 275 (333)
T KOG0991|consen 266 KLGYSPEDII 275 (333)
T ss_pred HcCCCHHHHH
Confidence 9999997543
No 386
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.85 E-value=1.5e+02 Score=33.94 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 002460 742 RAGRTKEAGELILS-MPFEA-S------ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 742 r~g~~~eA~~~~~~-m~~~p-~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
+..++..+.++|.. |..-| | +...+.|--.|..-.+++.|.++++++-+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 55677777777654 33222 1 2345566556667788999999999999999998888888888899999999
Q ss_pred hHHHHHHHHHhCCCCCCc
Q 002460 814 DVTSARGEMKRKNVKKDP 831 (919)
Q Consensus 814 ~a~~~~~~m~~~~~~~~~ 831 (919)
+|..+....+..-..+..
T Consensus 446 ~AL~~~~~~~s~~~~~~~ 463 (872)
T KOG4814|consen 446 EALTCLQKIKSSEDEKST 463 (872)
T ss_pred HHHHHHHHHHhhhccccc
Confidence 999888777765555443
No 387
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.10 E-value=4.9e+02 Score=30.88 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHH
Q 002460 608 ALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYIL 650 (919)
Q Consensus 608 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 650 (919)
++++|.++.. +.| .+.-++-.+++.|+-.+|+.+
T Consensus 636 ~lekA~eiC~---q~~------~~~E~VYlLgrmGn~k~AL~l 669 (846)
T KOG2066|consen 636 NLEKALEICS---QKN------FYEELVYLLGRMGNAKEALKL 669 (846)
T ss_pred CHHHHHHHHH---hhC------cHHHHHHHHHhhcchHHHHHH
Confidence 4566666654 222 233466667777777777665
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.35 E-value=1.8e+02 Score=26.67 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=58.6
Q ss_pred HHHhcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHhcCC---------CCCcchHHHHHHHHHhCCC-hhHHHHHHHHH
Q 002460 416 HAIKNDTVADSF--VSTALIDVYCRNGSMAEAEYLFENKD---------GFDLATWNAMIFGYILSNN-SHKALELFSHM 483 (919)
Q Consensus 416 ~~~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 483 (919)
.+.+.+..++.. ..|.++.-....+++.-...+++.+. ..+..+|.+++.+..+..- ---+..+|.-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 344445554442 34666666666667666666665542 2355678888888866655 33567778888
Q ss_pred HHCCCCCCHhHHHHHHHHHhcc
Q 002460 484 HTSGERLDEITIATAVKACGCL 505 (919)
Q Consensus 484 ~~~g~~p~~~t~~~ll~~~~~~ 505 (919)
.+.+.++++.-|..++.+|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 8777888888888888877654
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.03 E-value=44 Score=27.92 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC---------CchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 772 CRVQGDTETGKWVAEKLMALEPFD---------SSAYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
+.+.||+..|...+.+.++..... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777777777776643221 12345678889999999999988876553
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.96 E-value=4.1e+02 Score=29.46 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=56.7
Q ss_pred CCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhC---CCCCeeeehHHH
Q 002460 590 VPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQM---DMRNTVLWNAML 666 (919)
Q Consensus 590 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li 666 (919)
..+......++..+ .|+...+..+++.+...+... ..+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444455554443 677777777776654431111 112222222221 122223345556
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCC
Q 002460 667 VGLAQ---HGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGL 709 (919)
Q Consensus 667 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 709 (919)
+++.+ .++.+.|+..+.+|++.|..|..+.-..+..++...|.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 66655 47889999999999998888876665555555544443
No 391
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.73 E-value=26 Score=24.45 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhCC
Q 002460 800 VLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 800 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
..|+.+|...|+.+.|.+++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999998887543
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.73 E-value=3.6e+02 Score=29.90 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=34.4
Q ss_pred hHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccc
Q 002460 560 AWTTMISGCVD---NGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLT 607 (919)
Q Consensus 560 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 607 (919)
.+..+++++.+ .++++.|+..+..|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555666655 4789999999999999998888776655555544433
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.95 E-value=1.2e+02 Score=34.14 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC
Q 002460 633 SLVDMYAKCGNIEDAYILFKQMD 655 (919)
Q Consensus 633 ~li~~y~~~g~~~~A~~~~~~~~ 655 (919)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 47778899999999999988885
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.51 E-value=48 Score=26.46 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-h-hHHHHHHHHHhccCCHHHHHHHH
Q 002460 671 QHGNGEETLKLFEDMKAHGVEPD-S-VTFIGVLSACSYTGLVSEAYENF 717 (919)
Q Consensus 671 ~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~ 717 (919)
...+.++|+..|+..++.-..|. . .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999888644432 2 37788889999999999887764
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.76 E-value=1.9e+02 Score=24.83 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 002460 507 MLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRL 586 (919)
Q Consensus 507 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 586 (919)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||.+.|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 223333334456778899999965555666789999887755 478888888888887766
Q ss_pred cCCCCCHhHH
Q 002460 587 SGVVPDEFTF 596 (919)
Q Consensus 587 ~g~~p~~~t~ 596 (919)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 3333333
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.46 E-value=1.2e+02 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=24.6
Q ss_pred hhhhHhHhhhhcCChhhHHHHHHHHHh
Q 002460 299 LWNKKLSGYLQVGDNHGAIECFVNMIR 325 (919)
Q Consensus 299 ~~n~li~~~~~~g~~~~A~~l~~~m~~ 325 (919)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488889999999999999999999876
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.06 E-value=71 Score=35.85 Aligned_cols=131 Identities=12% Similarity=-0.014 Sum_probs=80.7
Q ss_pred CChhHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCCC--HHHH
Q 002460 692 PDSVTFIGVLSACSYTG--LVSEAYENFHLMREKYGIEPEVEHYSFLVDALG-RAGRTKEAGELILSM-PFEAS--ASMH 765 (919)
Q Consensus 692 p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~-r~g~~~eA~~~~~~m-~~~p~--~~~~ 765 (919)
|+..|...++.-....- ..+-|-.+|..|.. -+.|--...|. ..+|- -.|+...|...+..+ ...|- .+..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~-aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNE-AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeec-ccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 55555555544333222 22345555555543 33343222222 22333 468888888887765 33332 1233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 766 RALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 766 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
-.|.....+.|-...|-..+.+.+.+....|-.+..++++|....+.+.|++.++...++
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 445555566677777888888888888888888999999999999999999887655443
No 398
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.86 E-value=4.5e+02 Score=29.02 Aligned_cols=78 Identities=14% Similarity=0.001 Sum_probs=39.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccCchHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHHcCCH
Q 002460 468 ILSNNSHKALELFSHMHTSGERLDEIT--IATAVKACGCLLMLKQGKQMHAYAMKSGFELDLC--VSSGILDMYVKCGAM 543 (919)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 543 (919)
++.|+.+ +++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. .....+...++.|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445543 3445555677666532 233445555566654 334445556544322 112334455566777
Q ss_pred HHHHHHhccC
Q 002460 544 VDAQSIFNDI 553 (919)
Q Consensus 544 ~~A~~~f~~m 553 (919)
+....+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 7666666543
No 399
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=44.72 E-value=65 Score=30.50 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCC-----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHh
Q 002460 675 GEETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGL-----------VSEAYENFHLMREKYGIEPEVEHYSFLVDALG 741 (919)
Q Consensus 675 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~-----------~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 741 (919)
+++|+.-|++.+. +.|+. .++..+..++...+. +++|..+|+.... .+|+.+.|..-+++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 3556666666666 67865 477777777665442 3444444444433 5788888877666653
No 400
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.75 E-value=1.4e+02 Score=31.38 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 731 EHYSFLVDALGRAGRTKEAGELILSM--P--FEA--SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 731 ~~y~~li~~~~r~g~~~eA~~~~~~m--~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
.+|.-=.+-|.+..++..|...+.+. . -.| +++.|..-..+-..-||+..++.-..+++.++|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444566788999999999999775 1 233 34556555555566699999999999999999999999998888
Q ss_pred HHhhcCCcchHHHHHH
Q 002460 805 IFAAANQWDDVTSARG 820 (919)
Q Consensus 805 ~y~~~g~~~~a~~~~~ 820 (919)
++....++++|...-+
T Consensus 162 c~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777766553
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=3.8e+02 Score=27.47 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHhccCCHHHHHHHH
Q 002460 667 VGLAQHGNGEETLKLFEDMKAHGVEPDSV-------TFIGVLSACSYTGLVSEAYENF 717 (919)
Q Consensus 667 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~ 717 (919)
+-..+.+++++|+..+.+.+..|+..|.. |...+...|...|+...-.+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 33456778899999999999888877654 4555666677777765544433
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.10 E-value=74 Score=30.86 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=14.2
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002460 726 IEPEVEHYSFLVDALGRAGRTKEAGELILSM 756 (919)
Q Consensus 726 ~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m 756 (919)
..|+...|..++.++...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.47 E-value=70 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGV 700 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 700 (919)
+.-|+.+.|++++|.+..+.+++ ++|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 45577788888888888888887 57765544443
No 404
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.44 E-value=2.8e+02 Score=27.74 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=54.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CChh--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCC
Q 002460 669 LAQHGNGEETLKLFEDMKAHGVE-PDSV--TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGR 745 (919)
Q Consensus 669 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~ 745 (919)
....|+++.|+++.+-+++.|.. |+.. ++-+++. |+....-...... |-..++.....+..+-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~-- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASA-GESVEPYFLRVFLDLTTEW-- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcC--
Confidence 34678999999999999998854 4332 2222221 2222222222221 3333333332222221111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCC
Q 002460 746 TKEAGELILSMPFEASASMHRALLGACR---------VQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 746 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~p~ 794 (919)
.||.+..+-.+..+...+. ..++.+.|...++++++++|+
T Consensus 162 ---------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 ---------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ---------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2332333344555555552 335677888888888888884
No 405
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.67 E-value=1.6e+02 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=25.8
Q ss_pred eeHHHHHHHHHHcCCchHHHHHHHHHHH
Q 002460 226 VLWKVMLRAYAENGFGEEVFHLFVDLHR 253 (919)
Q Consensus 226 ~~~n~li~~~~~~g~~~~A~~l~~~m~~ 253 (919)
.-|..|+.-|-.+|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3599999999999999999999999887
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=41.26 E-value=2.5e+02 Score=28.82 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHh--cCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHH--
Q 002460 565 ISGCVDNGEEDLALSIYHQMRL--SGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAK-- 640 (919)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 640 (919)
|.+++..+++.+++...-+--+ ..++|...-. -|-.|++.+....+.++-..-...--.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6677777777777654433222 1233333332 233355666666665555444433222223335556555543
Q ss_pred ---cCCHHHHHHHH
Q 002460 641 ---CGNIEDAYILF 651 (919)
Q Consensus 641 ---~g~~~~A~~~~ 651 (919)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 47777777665
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.01 E-value=1.1e+02 Score=27.89 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHH
Q 002460 747 KEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTS 817 (919)
Q Consensus 747 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 817 (919)
+.|.++++-|+- ....-.........|++.-|..+.+.++..+|+|..+-.+.+++|...|.-.+...
T Consensus 58 ~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~ 125 (141)
T PF14863_consen 58 EEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENAN 125 (141)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHH
Confidence 456666666631 11222233345678999999999999999999999999999998887776554433
No 408
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.00 E-value=92 Score=34.19 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 002460 757 PFEASA--SMHRALLGACRVQGDTETGKWVAEKLMALEPF 794 (919)
Q Consensus 757 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 794 (919)
.++|.. -++++-++.+.+++|+..|-..+++++++.|.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 455543 46777788889999999999999999999885
No 409
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.91 E-value=3.1e+02 Score=29.82 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=7.6
Q ss_pred hcCCcchHHHH
Q 002460 808 AANQWDDVTSA 818 (919)
Q Consensus 808 ~~g~~~~a~~~ 818 (919)
..|++++|...
T Consensus 258 ~~~ry~da~~r 268 (380)
T TIGR02710 258 TQGRYDDAAAR 268 (380)
T ss_pred HccCHHHHHHH
Confidence 56788887643
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.87 E-value=36 Score=34.72 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=27.0
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 002460 705 SYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILSM-PFEA 760 (919)
Q Consensus 705 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~m-~~~p 760 (919)
.+.|+.++|..+|+... .+.|+ +....-+........++-+|-.++-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 45666666766666554 34454 444444444444444555555555443 3444
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.78 E-value=2.3e+02 Score=28.54 Aligned_cols=161 Identities=13% Similarity=0.069 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhc
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSY-TGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRA 743 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~ 743 (919)
++...-+.|+++++...++++.+.+...+..--+.+..+|-. .|....+++.+..+..+..-..+ .....++.-|-..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455566778888888888888876555554444444444422 23444556665555543222212 2222222222111
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCH-HHHHHHHHHH-H---h--cC-----CHHHHHHHHHHHHh-----hCCCCC
Q 002460 744 ------GRTKEAGELILSM--PF--EASA-SMHRALLGAC-R---V--QG-----DTETGKWVAEKLMA-----LEPFDS 796 (919)
Q Consensus 744 ------g~~~eA~~~~~~m--~~--~p~~-~~~~~ll~~~-~---~--~g-----~~~~a~~~~~~~~~-----~~p~~~ 796 (919)
.--.+..++++.. |. .+.. +.|.-+-+-| + . .| -.+.|..+++++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1223455555553 21 1111 1222222111 1 1 11 24667777777765 567666
Q ss_pred chHHHHHH----HHhhcCCcchHHHHHHHHHhCC
Q 002460 797 SAYVLLSN----IFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 797 ~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~~ 826 (919)
.-.-+..| .|.-.|+.++|.++-+...+.+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 54433333 3566899999998877665443
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.72 E-value=3.9e+02 Score=26.92 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc-cccHHHHHHHHHHH
Q 002460 564 MISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC-LTALEQGRQIHANL 619 (919)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~ 619 (919)
++...-+.|+++++...++++...+...+..--+.+-.+|-. .|....+.++...+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 455566778888888888888777666665554444444422 23344444444443
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.35 E-value=2.8e+02 Score=25.03 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 727 EPEVEHYSFLVDALGRAGRTK---EAGELILSM-P-FEAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 727 ~p~~~~y~~li~~~~r~g~~~---eA~~~~~~m-~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
.++.++--.+..++.++.+.+ +-..++++. + -.|+ -....-|.-+|.+-+++++++++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555555566666655443 334455544 2 2232 1223334456788899999999999999999976543
No 414
>PRK14015 pepN aminopeptidase N; Provisional
Probab=39.69 E-value=7.5e+02 Score=30.63 Aligned_cols=149 Identities=16% Similarity=0.198 Sum_probs=77.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHhhc
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALGRA 743 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~r~ 743 (919)
.+.-++..+..+......++..+. .|..--..-|.++.+.+. .+..+.++...+++.-.|-+ .-|-.+...-.+.
T Consensus 688 ~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~ 763 (875)
T PRK14015 688 CLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAP 763 (875)
T ss_pred HHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCc
Confidence 333333334333333344444432 233323344455554444 23344555555544555543 3343333222222
Q ss_pred CCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchH
Q 002460 744 GRTKEAGELILSMPFEA-SASMHRALLGACRVQGD-------TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDV 815 (919)
Q Consensus 744 g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 815 (919)
+-++...++.+.-.+.+ ++.-.++|++++...+- -..=.-+++.++++++.||.+-..|+..+.+=.++++.
T Consensus 764 ~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~ 843 (875)
T PRK14015 764 DTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPK 843 (875)
T ss_pred CHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHH
Confidence 33334333333222222 34456888888854332 12235577888999999999999999988888888776
Q ss_pred HH
Q 002460 816 TS 817 (919)
Q Consensus 816 ~~ 817 (919)
.+
T Consensus 844 r~ 845 (875)
T PRK14015 844 RQ 845 (875)
T ss_pred HH
Confidence 54
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.48 E-value=98 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 002460 757 PFEASASMHRALLGACRVQGDTETGKWVAEKLMALEP 793 (919)
Q Consensus 757 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 793 (919)
...|++.++..++.++...|+.++|+...+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4578888888888889999999999999999988888
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.45 E-value=62 Score=22.59 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhc
Q 002460 564 MISGCVDNGEEDLALSIYHQMRLS 587 (919)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~~~ 587 (919)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666644
No 417
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.43 E-value=2.8e+02 Score=27.71 Aligned_cols=78 Identities=9% Similarity=-0.067 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHhCC--CCCe-eeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHhccCCHHHHHHH
Q 002460 641 CGNIEDAYILFKQMD--MRNT-VLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVT-FIGVLSACSYTGLVSEAYEN 716 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 716 (919)
..+++.|...+.+.. .|++ .-|+.=+.++.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555554443 3333 2344455555555566655555555554 4555542 22233334444455555555
Q ss_pred HHHh
Q 002460 717 FHLM 720 (919)
Q Consensus 717 ~~~m 720 (919)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5444
No 418
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=39.31 E-value=7.3e+02 Score=30.67 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=78.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHh
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEV-EHYSFLVDALG 741 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~~~ 741 (919)
|..+.-++..+..+......++..+. .|..--.+-|.++.+.+. .+....++...+++.-.|-+ .-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 33444444444443333333444332 222223334444444433 23344555555554555543 33333332222
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcc
Q 002460 742 RAGRTKEAGELILSMPFEA-SASMHRALLGACRVQGD-------TETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWD 813 (919)
Q Consensus 742 r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 813 (919)
+.+-++...++.+.-.+.+ ++.-.++|++++...+. -..=.-+++.+++++|-||.+-..|+..+.+=.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 2233333333333222222 34456888888753332 122355788899999999999999999888888887
Q ss_pred hHHH
Q 002460 814 DVTS 817 (919)
Q Consensus 814 ~a~~ 817 (919)
+..+
T Consensus 832 ~~r~ 835 (863)
T TIGR02414 832 PKRQ 835 (863)
T ss_pred HHHH
Confidence 7654
No 419
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.08 E-value=2.1e+02 Score=29.79 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=80.8
Q ss_pred cccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCCee--ee--hHHHHHHHhcCCHHHHH
Q 002460 604 SCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRNTV--LW--NAMLVGLAQHGNGEETL 679 (919)
Q Consensus 604 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~--~~li~~~~~~g~~~~A~ 679 (919)
.....+.+|+.+++...+.+- .+ |.+..+...--...+.+.++|.. +| .-+..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344456778888887777541 11 22222222211222333444432 33 22444455778888888
Q ss_pred HHHHHHHHcCCCCChh---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002460 680 KLFEDMKAHGVEPDSV---TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 680 ~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~~eA~~~~~~ 755 (919)
+.|+.+.+. .|=.. .-..|+.+|....-+.+...++.+--+- ..+-+ ...|+. ++. ++..+-++
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYTa---ALL------K~RAVa~k 363 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTA---ALL------KTRAVSEK 363 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHH---HHH------HHHHHHhh
Confidence 888888764 34211 2334666666665555555444433221 22111 222322 121 22233332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 756 MPFEASASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 756 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+.|+..+-+-|-.+- ..|.++..++.+.+|.-|..
T Consensus 364 --Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 364 --FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred --cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHH
Confidence 356655444433332 23677888888999975544
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.17 E-value=2e+02 Score=23.86 Aligned_cols=62 Identities=24% Similarity=0.147 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHhhcCCcc-hHHHHHHHH
Q 002460 761 SASMHRALLGACRVQGDTETGKWVAEKLMALEPF--DSSAYVLLSNIFAAANQWD-DVTSARGEM 822 (919)
Q Consensus 761 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m 822 (919)
|......+...+...|+++.|...+-.+++.+|. +..+-..|..++...|.-+ -+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455666667777778888888887777777654 3555667777777777644 344555444
No 421
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.85 E-value=7.6e+02 Score=29.32 Aligned_cols=247 Identities=9% Similarity=-0.044 Sum_probs=123.3
Q ss_pred cCChhHHHHHHHHHHhcC-CCCCHh--HHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHH
Q 002460 571 NGEEDLALSIYHQMRLSG-VVPDEF--TFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDA 647 (919)
Q Consensus 571 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 647 (919)
..+.+.|..++.+..... ..+... ....+.......+...++...+....... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345678888888764432 322222 12222222222211344444444333222 2333344445555588888888
Q ss_pred HHHHHhCCCC--CeeeehH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH-HHHHHHhHHh
Q 002460 648 YILFKQMDMR--NTVLWNA-MLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEA-YENFHLMREK 723 (919)
Q Consensus 648 ~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~m~~~ 723 (919)
...|..|+.. +..-|-- +..++...|+.++|...|+++.. . .+|..++.+- +.|..-.- ......-...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhhh
Confidence 8888888632 2222222 45666668899999999888743 1 2455554331 12211000 0000000000
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCchHH
Q 002460 724 YGIEPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMALE---PFDSSAYV 800 (919)
Q Consensus 724 ~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~ 800 (919)
..-.| -..-+..+...|+..+|...+..+-...+......+.......|..+.+..+..+....+ -.-|..|.
T Consensus 405 ~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 405 LTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred hccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00001 112244566778888888877765333455555666666677888888887776543211 11233455
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhCCCCCC
Q 002460 801 LLSNIFAAANQWDDVTSARGEMKRKNVKKD 830 (919)
Q Consensus 801 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~ 830 (919)
-...-++..-..+.+.-.-=...|.+..+.
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 555556555556655432222235655544
No 422
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.81 E-value=2.8e+02 Score=30.92 Aligned_cols=52 Identities=8% Similarity=0.053 Sum_probs=23.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 736 LVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 736 li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
.+--|+.++++++|.++..-.. ....|.+|......+.+...++.++..+.+
T Consensus 579 iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~ 630 (737)
T KOG1524|consen 579 ILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQ 630 (737)
T ss_pred HHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhc
Confidence 3334444555555555444322 234455554444444454444444444433
No 423
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.43 E-value=6e+02 Score=28.02 Aligned_cols=172 Identities=15% Similarity=0.043 Sum_probs=85.1
Q ss_pred cCCCchhhhHHHHHHHhcCCCCCcc--hhhHHHHHHHhCCChhHHHHHhccCCCCCcc---hHHHHHHHHHhcCCCCCCC
Q 002460 65 STSDLLLGKSTHARILNSSQIPDRF--LTNNLMTMYSRCGSLVYARRLFDKMPDRDLI---SWNSILAAYAHSGEGNAEN 139 (919)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~---~~n~li~~~~~~g~~~~~~ 139 (919)
..|+++. ...+++.|..++.. ...+.+...++.|+++-+.-+++.-..++.. .++. +...+..| +
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~~~g-----~ 80 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAVEEG-----D 80 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHHHCC-----C
Confidence 4455443 34445566655542 2455666777788887776666653333321 2233 33444566 5
Q ss_pred hhHHHHHHHHHHhcCCCCCcc---cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh--HHHHHHHHHHhcCChhHHH
Q 002460 140 VTEGFRLFRSLRESITFTSRL---TLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF--VSGALVNIYSKFGKIREAK 214 (919)
Q Consensus 140 ~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 214 (919)
.+.+..++ ..|...+.. .-.+.|..++..|+. ++.+.+++.|..++.. ...+.+...+..|+.+-..
T Consensus 81 ~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 55544433 333222111 011233333444554 4555566667665542 2344556666777777777
Q ss_pred HHHhcCCC---CCceeHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC
Q 002460 215 FLFDGMQE---RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPD 259 (919)
Q Consensus 215 ~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (919)
.+++.-.. +|...++.|.. .+..|+. ++++.+.+.|..|+
T Consensus 153 ~Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~----eiv~~Ll~~ga~~n 195 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTPLII-AMAKGDI----AICKMLLDSGANID 195 (413)
T ss_pred HHHhcCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHhCCCCCC
Confidence 77665433 23333444433 3344443 34445556666665
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.61 E-value=51 Score=32.39 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=39.5
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 002460 740 LGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSS 797 (919)
Q Consensus 740 ~~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 797 (919)
+...|+.+.|.+++.+. ..-| ....|--+...--+.|+++.|...+++.++++|+|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 44566677777777665 3333 4566777766667778888888888888888876543
No 425
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=35.93 E-value=13 Score=28.25 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=12.0
Q ss_pred ccCCccccccCCccC
Q 002460 900 LYANRFHHLRDGMCP 914 (919)
Q Consensus 900 rd~~r~h~f~~g~cs 914 (919)
.|++-.|+||||+-+
T Consensus 13 kDGstvyiFKDGKMa 27 (73)
T PF11525_consen 13 KDGSTVYIFKDGKMA 27 (73)
T ss_dssp TTSEEEEEETTS-EE
T ss_pred CCCCEEEEEcCCcee
Confidence 788999999999854
No 426
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.67 E-value=9.7e+02 Score=29.91 Aligned_cols=254 Identities=11% Similarity=-0.017 Sum_probs=133.0
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 002460 447 YLFENKDGFDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELD 526 (919)
Q Consensus 447 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 526 (919)
.+...+..+|...-..-+..+.+.+. ++++..+..... .+|...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444556666666666666666654 334444444443 22333333444444333211111122222222 255
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHccc
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCL 606 (919)
Q Consensus 527 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 606 (919)
..+..+.+..+...+.- ....+...+..+|...=...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 56666666666544321 12234445556666555555666665544322 12222 234555545555566555
Q ss_pred ccHHH-HHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHH-HHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHH
Q 002460 607 TALEQ-GRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAY-ILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFED 684 (919)
Q Consensus 607 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 684 (919)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+-.
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333332 456777777888888888766553 34444455666566667777777765 456677777
Q ss_pred HHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 685 MKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 685 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
+++ .|+...-...+.++...+.-..+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 665 56766666667777665334456666666655
No 427
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.06 E-value=2.2e+02 Score=25.21 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVD 738 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 738 (919)
+..+-++.+....+.|++...-.-|.||.+.+++..|..+|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 33444556666678899999999999999999999999999998774 4454556666653
No 428
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.40 E-value=1.4e+03 Score=31.40 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=63.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C-----CCCCHH--
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-----P-----FEASAS-- 763 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m-----~-----~~p~~~-- 763 (919)
+|......+..+|.++.|....-...+. + .| ..+--....+=..|+-..|+.++++. + .+|.+.
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 6777777777788888887766555442 2 23 33444556666778888888777653 1 111122
Q ss_pred ---HHH-HHH--HHHHh-cCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 002460 764 ---MHR-ALL--GACRV-QGD--TETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 764 ---~~~-~ll--~~~~~-~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 806 (919)
+.. +++ .-+.. .|+ .+.-+..+.++.++.|+....|+.|+.-|
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 222 111 11221 133 33456788889999998888888777443
No 429
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.68 E-value=1.4e+02 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred HcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHH
Q 002460 640 KCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETL 679 (919)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 679 (919)
..|+.+.|.++++.++ +.+..|...+.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4578888888888888 77788888888888887766554
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.07 E-value=50 Score=29.43 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.3
Q ss_pred HcCCchHHHHHHHHHHHCCCCCC
Q 002460 237 ENGFGEEVFHLFVDLHRSGLCPD 259 (919)
Q Consensus 237 ~~g~~~~A~~l~~~m~~~g~~p~ 259 (919)
+.|.-..|..+|+.|.+.|-.||
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc
Confidence 34666789999999999999998
No 431
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.05 E-value=1e+03 Score=29.97 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 002460 697 FIGVLSACSYTGLVSEAYENFHLMREKYGIEPE----VEHYSFLVDALGRAGRTKEAGELILSMPFE-ASASMHRALLGA 771 (919)
Q Consensus 697 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m~~~-p~~~~~~~ll~~ 771 (919)
|..++..+-..+..|++.++-..+.+. +.|+ ..+++++.+-....|.+-+|...+-+-|.. ..-...+-|+-.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 666777777888888888887777774 3333 456888888888899999999888765321 112345666666
Q ss_pred HHhcCCHHH------------HHH-HHHHHHhhCCCC-CchHHHHHHHHhhcCCcchHHHH
Q 002460 772 CRVQGDTET------------GKW-VAEKLMALEPFD-SSAYVLLSNIFAAANQWDDVTSA 818 (919)
Q Consensus 772 ~~~~g~~~~------------a~~-~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~ 818 (919)
....|.++. -+. +.+..-.-.|.. +..|.+|--.|...++|.+|..+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666665432 222 333333334433 44566777777889999999865
No 432
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.69 E-value=6.3e+02 Score=28.24 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch
Q 002460 772 CRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA 832 (919)
Q Consensus 772 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 832 (919)
+..-.++..+++-.+.+.....+.+.+..+-++.+...|++.+|.+++. ..++.++||
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 3445667777777777777777777788888999999999999987764 456666665
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.66 E-value=4e+02 Score=29.18 Aligned_cols=52 Identities=15% Similarity=0.019 Sum_probs=39.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 002460 704 CSYTGLVSEAYENFHLMREKYGIEPEVE--HYSFLVDALGR--AGRTKEAGELILSMP 757 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~y~~li~~~~r--~g~~~eA~~~~~~m~ 757 (919)
.-..+++..|.++|+.+..+ ++++.. .|..+..+|.. .-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44789999999999999885 555544 56666666764 567889999998863
No 434
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.50 E-value=2e+02 Score=25.44 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 002460 748 EAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMAL 791 (919)
Q Consensus 748 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 791 (919)
+++.-+-.+.+-|++.+..+-|.+|++-+|+..|.+++|-+...
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444567899999999999999999999999988866543
No 435
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.02 E-value=3.2e+02 Score=24.00 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchH----HHHHHHHhhcCCcchHHHHHHH
Q 002460 765 HRALLGACRVQGDTETGKWVAEKLM-------ALEPFDSSAY----VLLSNIFAAANQWDDVTSARGE 821 (919)
Q Consensus 765 ~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~ 821 (919)
+..|..++...|+++++...+++++ +++.+....| ..-+.++...|+.++|...|++
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3334444444455555444444443 3444322222 2345567788999999887754
No 436
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.87 E-value=1.1e+03 Score=29.38 Aligned_cols=286 Identities=9% Similarity=-0.007 Sum_probs=147.3
Q ss_pred HHHHHHHcCCHHHHHHHhccCCC--CC-hhhHHHH-------HHHHHHcC---ChhHHHHHHHHHHhcCCCCCHhHHHHH
Q 002460 533 ILDMYVKCGAMVDAQSIFNDIPA--PD-DVAWTTM-------ISGCVDNG---EEDLALSIYHQMRLSGVVPDEFTFAIL 599 (919)
Q Consensus 533 Li~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~l-------i~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~l 599 (919)
+=+++.....++.|...++++.. |+ ...|.++ +.--...| .+++|+.-|+.+... ..-+--|..-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhH
Confidence 34667777788888888888763 21 2223222 22222233 356777777776543 2222334444
Q ss_pred HHHHcccccHHHHHHHHHHHHH-cCCCCCchh------hc-----------HHHHHHHH------cCCHHHHHHHHHhCC
Q 002460 600 VKASSCLTALEQGRQIHANLIK-LDCSSDPFV------GI-----------SLVDMYAK------CGNIEDAYILFKQMD 655 (919)
Q Consensus 600 l~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~------~~-----------~li~~y~~------~g~~~~A~~~~~~~~ 655 (919)
.-.|-+.|++++-.+.+....+ ..-.|-... |. +++-|+.. .-...+-.++|+.+.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILY 638 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4567788888777776665544 333342211 10 11111110 011122233444333
Q ss_pred C---CCee---------eeh---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 656 M---RNTV---------LWN---AMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 656 ~---~~~~---------~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
. +... .-. .+.-+| -.|..---.++|++..+ .+|..+...+....+..|.++-+.+..+.+
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 639 HKQQATLFCQLDKTPLQFRSSKMELFLSF-WSGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred hhccCCceeeccCchhhhhhhhHHHHHHH-HhcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 1111 111 111122 23444445566666665 345556666666677889998888777766
Q ss_pred HHhcC---CCCC--------hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002460 721 REKYG---IEPE--------VEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLM 789 (919)
Q Consensus 721 ~~~~~---~~p~--------~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 789 (919)
.+.+. ..-+ ..+|-.=+.++.....++++.+.+...+..--...+..+..-+..+++.+.-..+.+.+-
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (932)
T PRK13184 715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIY 794 (932)
T ss_pred HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 64311 1111 122333355566667788888777665421122344455555667777777666666666
Q ss_pred hhCCCCCc---hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 002460 790 ALEPFDSS---AYVLLSNIFAAANQWDDVTSARGEMKR 824 (919)
Q Consensus 790 ~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~ 824 (919)
...+.... .......+|--..+|++|-++++..-.
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 795 DYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred hccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 54443222 222345567777889999888855433
No 437
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.76 E-value=5.3e+02 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=14.3
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002460 742 RAGRTKEAGELILSMPFEASASMHRALLGACR 773 (919)
Q Consensus 742 r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 773 (919)
..+.+.||..+.+..+.+-....|..++..|.
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 34555555555555432112234444444444
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.75 E-value=61 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 825 (919)
...+|.+-+-+++.+++++-|+....|..++....++|+.+.|.+.+++..+-
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 35688899999999999999999999999999999999999999988766543
No 439
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=6.6e+02 Score=27.36 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=59.5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHH----HHHHH
Q 002460 703 ACSYTGLVSEAYENFHLMREKYGIEPE----VEHYSFLVDALGRAGRTKEAGELILSMPFEA--SASMHRA----LLGAC 772 (919)
Q Consensus 703 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p--~~~~~~~----ll~~~ 772 (919)
++-..|+...-..++......-.+..| ....|+|++.|.-.+.++.|..++.+.+.+- +..-|.- +...-
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk 257 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK 257 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH
Confidence 345566666666666555443233333 4456777777788889999999998875321 1112222 22334
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Q 002460 773 RVQGDTETGKWVAEKLMALEPFD 795 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~ 795 (919)
..++++..|.+.+-+++...|++
T Consensus 258 aiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 258 AIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhcchhHHHHHHHHHHHhCcch
Confidence 67788999999998888888863
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.97 E-value=1.4e+02 Score=28.48 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHH
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTS 817 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 817 (919)
....|.+.|.+++|.+++++.++ +|++...-..|..+-.....+.....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 44568888888888888888888 77665554455544444444444443
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.97 E-value=69 Score=33.11 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=36.0
Q ss_pred CCcee-HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 002460 223 RDVVL-WKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCV 266 (919)
Q Consensus 223 ~~~~~-~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 266 (919)
+|..+ ||.-|....+.|++++|+.+++|..+.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34443 789999999999999999999999999987766666544
No 442
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.85 E-value=58 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHh
Q 002460 139 NVTEGFRLFRSLRESITFTSRLTLAPLLKLC 169 (919)
Q Consensus 139 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 169 (919)
.-.+|-.+|.+|.+.|-+||. ++.||..+
T Consensus 110 sk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 566899999999999999986 67777654
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.33 E-value=2.4e+02 Score=23.22 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCChhHHHHHHhcCCCCCceeHHHHHHHHHHcCCchHHHH
Q 002460 179 ETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFH 246 (919)
Q Consensus 179 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~ 246 (919)
.++++.+...|+- +....+.+-.+-...|+.+.|+.+++.++ +..-.|...++++-+.|.-+-|-+
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 3455555555531 22222222222235578888888888888 777788888888888877665543
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.53 E-value=66 Score=33.22 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred hhhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHH
Q 002460 300 WNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFL 336 (919)
Q Consensus 300 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (919)
||.-|...++.|++++|+.++++.++.|+.--..||.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6788999999999999999999999988875555553
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.35 E-value=1.8e+02 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q 002460 768 LLGACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 768 ll~~~~~~g~~~~a~~~~~~~~~~~ 792 (919)
+.......|+.++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3344566688888888888777653
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=29.06 E-value=7e+02 Score=26.25 Aligned_cols=98 Identities=20% Similarity=0.066 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002460 709 LVSEAYENFHLMREKYGI---EPEVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVA 785 (919)
Q Consensus 709 ~~~~a~~~~~~m~~~~~~---~p~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 785 (919)
-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367888888888773111 34556666677777788887766666666555667777788888877778888888888
Q ss_pred HHHHhhC-CCCCchHHHHHHHH
Q 002460 786 EKLMALE-PFDSSAYVLLSNIF 806 (919)
Q Consensus 786 ~~~~~~~-p~~~~~~~~l~~~y 806 (919)
+.++.-+ -.....+..+..++
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHHh
Confidence 8888732 12233445554443
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.32 E-value=1.1e+02 Score=23.13 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 002460 693 DSVTFIGVLSACSYTGLVSEAYENFHLMRE 722 (919)
Q Consensus 693 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 722 (919)
|..--..++.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566666667777777666666554
No 448
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=28.19 E-value=9.1e+02 Score=27.27 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=96.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcccccHHHHHHHHHHHHHcCCCCCchhhcHHHH
Q 002460 557 DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVD 636 (919)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 636 (919)
|....-+++..+.++-+..-...+..+|+.-| -+...|..++..|... .-++-..++.++.+..+. |++...-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 55566677888888888888888888888754 4667788888888777 556667777777777654 4444555777
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCe---------eeehHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHhc
Q 002460 637 MYAKCGNIEDAYILFKQMDMRNT---------VLWNAMLVGLAQHGNGEETLKLFEDMKAH-GVEPDSVTFIGVLSACSY 706 (919)
Q Consensus 637 ~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~ 706 (919)
-|-+ ++.+.+...|..+..+=+ ..|.-++..- ..+.+..+.+..+.... |..--.+.+--+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 777777777776642111 1344444311 23445555555554432 222223334444455666
Q ss_pred cCCHHHHHHHHHHhHH
Q 002460 707 TGLVSEAYENFHLMRE 722 (919)
Q Consensus 707 ~g~~~~a~~~~~~m~~ 722 (919)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 6666777666665554
No 449
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.16 E-value=3.9e+02 Score=25.56 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002460 699 GVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGD 777 (919)
Q Consensus 699 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 777 (919)
.-|.-|...|+++.+...|.....-++-.. ....+.. -+.++...++... ..+|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 345567777888888888777765432221 1111111 1333333333321 12333332221 56
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHH
Q 002460 778 TETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 778 ~~~a~~~~~~~~~~~p~~~~~~~~l 802 (919)
.+........+++++|++.+++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7778888888888888665555443
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.14 E-value=1.4e+02 Score=25.70 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=35.3
Q ss_pred hhHhHhhhhcCChhhHHHHHHHHHhhcCCCCchhHHHHhhhhcCC--CChhHHHHHHHHHHHhCCCcc
Q 002460 301 NKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGT--DNLNLGQQIHGTTLKSGFYSA 366 (919)
Q Consensus 301 n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~ 366 (919)
+.++..|...|+.++|...++++......+ .....++..+... ...+..-.++..+.+.+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~--~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHH--EVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHH--HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHH--HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 345778889999999999998874331111 2223334443333 233445566666666655443
No 451
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.77 E-value=5.6e+02 Score=29.25 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHhHHhc----------CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC------CCCCC------
Q 002460 704 CSYTGLVSEAYENFHLMREKY----------GIEPEVEHYSFLVDALGRAGRTKEAGELILSM------PFEAS------ 761 (919)
Q Consensus 704 ~~~~g~~~~a~~~~~~m~~~~----------~~~p~~~~y~~li~~~~r~g~~~eA~~~~~~m------~~~p~------ 761 (919)
+.+...++++..-|......+ .-+-.+.+.-.|.+++-.+|+.+-|.+++++. -..|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHh
Q 002460 762 --------------ASMHRALLGACRVQGDTETGKWVAEKLMALEPF-DSSAYVLLSNIFA 807 (919)
Q Consensus 762 --------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~ 807 (919)
.-+....+....+.|=+..|.+..+.++.++|. ||-....+..+|+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 452
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.65 E-value=9.2e+02 Score=27.17 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=67.6
Q ss_pred HHHhhcCCCchhhhHHHHHHHhcCCCCCcch--hhHHHHH-----HHhCCChhHHHHHhccCCC---CCcchHHHHHHHH
Q 002460 60 LRHAISTSDLLLGKSTHARILNSSQIPDRFL--TNNLMTM-----YSRCGSLVYARRLFDKMPD---RDLISWNSILAAY 129 (919)
Q Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~-----y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~ 129 (919)
|...+..++.+ +...+++.|..++... ..+.+.. .+..|+.+-+.-+++.-.. ++...++.+..|.
T Consensus 39 L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~ 114 (480)
T PHA03100 39 LYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114 (480)
T ss_pred hhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHH
Confidence 33344445443 3344455665554322 2344555 5666777666666665333 2333344444444
Q ss_pred H-hcCCCCCCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHhhcCCChhhHHHHHHHHHHhCCCCcHh--HHHHHHHHH
Q 002460 130 A-HSGEGNAENVTEGFRLFRSLRESITFTSRLT--LAPLLKLCLSSGYVWASETVHGYALKIGLVWDEF--VSGALVNIY 204 (919)
Q Consensus 130 ~-~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~--~~~~li~~y 204 (919)
. +.| +. ++++.+.+.|..++... -.+.+..++..|. .-.++.+.+++.|..++.. ...+-+...
T Consensus 115 ~~~~~-----~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A 183 (480)
T PHA03100 115 SKKSN-----SY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIA 183 (480)
T ss_pred hcccC-----hH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHH
Confidence 2 344 32 23334445565443221 1123333333341 1223444555556544322 233445555
Q ss_pred HhcCChhHHHHHHhcCC
Q 002460 205 SKFGKIREAKFLFDGMQ 221 (919)
Q Consensus 205 ~~~g~~~~A~~~f~~m~ 221 (919)
+..|+.+-+..+++.-.
T Consensus 184 ~~~~~~~iv~~Ll~~ga 200 (480)
T PHA03100 184 VEKGNIDVIKFLLDNGA 200 (480)
T ss_pred HHhCCHHHHHHHHHcCC
Confidence 66666666666655433
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.57 E-value=2.4e+02 Score=29.11 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHh
Q 002460 665 MLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLM 720 (919)
Q Consensus 665 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 720 (919)
....|...|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+.+.++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555555555555555554 233 4444455555555555544444444443
No 454
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.26 E-value=2e+02 Score=20.44 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 002460 468 ILSNNSHKALELFSHMHTSGERLDEITIATAVK 500 (919)
Q Consensus 468 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 500 (919)
.+.|-..++..++++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777776666666655554
No 455
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.13 E-value=2.1e+02 Score=20.29 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=23.9
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 002460 569 VDNGEEDLALSIYHQMRLSGVVPDEFTFAILVK 601 (919)
Q Consensus 569 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 601 (919)
.+.|...++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456777778888888888887777776666554
No 456
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.10 E-value=7.8e+02 Score=26.14 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHhh---cCCHHHHHH
Q 002460 676 EETLKLFEDMKAHGVEPDS-VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGR---AGRTKEAGE 751 (919)
Q Consensus 676 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~r---~g~~~eA~~ 751 (919)
+.-+.++++.++. .|+. .....+|..+.+....++..+-++++... .+-+...|...++.... .-.+++..+
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4455566665554 3433 34455555666666666666666666553 11134444444443322 112333333
Q ss_pred HHHh-------CCC--------CC--CHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhhC
Q 002460 752 LILS-------MPF--------EA--SASMHRALLG---ACRVQGDTETGKWVAEKLMALE 792 (919)
Q Consensus 752 ~~~~-------m~~--------~p--~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 792 (919)
+|.+ ... .+ .......++. .++..|-.+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3222 110 01 1122233333 3467799999999999999875
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.41 E-value=1e+02 Score=34.04 Aligned_cols=50 Identities=6% Similarity=-0.026 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHH
Q 002460 770 GACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSAR 819 (919)
Q Consensus 770 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 819 (919)
+.....++++.|...+-++++++|+++..|..-+.+|.+.+.+..|..=.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da 61 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDA 61 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHH
Confidence 34456678999999999999999999999999999999999999988654
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.29 E-value=7.6e+02 Score=29.85 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=89.3
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeehHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 002460 636 DMYAKCGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYE 715 (919)
Q Consensus 636 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 715 (919)
+....||+++.|.+.-..+. |...|..|+..-...|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567999999988877665 556899999999999999999999988765 2223333566788888776
Q ss_pred HHHHhHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002460 716 NFHLMREKYGIEPEVE-HYSFLVDALGRAGRTKEAGELILSMPFEASASMHRALLGACRVQGDTETGKWVAEKLMA 790 (919)
Q Consensus 716 ~~~~m~~~~~~~p~~~-~y~~li~~~~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 790 (919)
+-+....+ -|.. +|. ..+ -.|+.++-.++++..+.-|-+. + .-..||.-++|+++.+++-.
T Consensus 720 m~~iae~r----~D~~~~~q--nal--Yl~dv~ervkIl~n~g~~~lay-----l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATGQFQ--NAL--YLGDVKERVKILENGGQLPLAY-----L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHHHHH--HHH--HhccHHHHHHHHHhcCcccHHH-----H-HHhhcCcHHHHHHHHHhhcc
Confidence 65544332 2321 121 112 2578888888888876544322 1 13568988999999888766
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.28 E-value=1e+02 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=16.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHH
Q 002460 663 NAMLVGLAQHGNGEETLKLFEDMKA 687 (919)
Q Consensus 663 ~~li~~~~~~g~~~~A~~~~~~m~~ 687 (919)
-.+|.+|.+.|++++|.++.+++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467777777777777777776654
No 460
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.04 E-value=8.5e+02 Score=25.87 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 002460 762 ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSN 804 (919)
Q Consensus 762 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 804 (919)
...+..++..+.+..+.+....-+++++..+|.++..+....+
T Consensus 65 ~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 65 ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3444555555555555555555555555555555555544443
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.84 E-value=27 Score=36.39 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHhhcCCcchHHHHHHHHHhCCCCCCch----------HHHHHHHHHH
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKNVKKDPA----------DLIFAKVEGL 842 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~----------~~i~~~l~~l 842 (919)
...|+++.|...+..+++++|..+..|.--+.++.+.+++..|++-.....+..-....+ .-++.+-...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 456889999999999999999999999999999999999999988775443322221111 2233444455
Q ss_pred HHHHHhCCcccCCCcccccCCH
Q 002460 843 IKRIKEGGYVPDTDFVLLDVEE 864 (919)
Q Consensus 843 ~~~~~~~g~~p~~~~~~~~~~~ 864 (919)
...-.+.+|-++++-|+..|.+
T Consensus 205 l~~a~kld~dE~~~a~lKeV~p 226 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLKEVFP 226 (377)
T ss_pred HHHHHhccccHHHHHHHHHhcc
Confidence 5555667888888877766554
No 462
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.73 E-value=7.4e+02 Score=30.95 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=19.7
Q ss_pred HHHHHHHHHhccC--CHHHHHHHHHHhHH
Q 002460 696 TFIGVLSACSYTG--LVSEAYENFHLMRE 722 (919)
Q Consensus 696 t~~~ll~a~~~~g--~~~~a~~~~~~m~~ 722 (919)
-+..+|.+|.+.+ ++++|+.+...+.+
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 3456777777777 78888888777765
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=24.13 E-value=3.8e+02 Score=26.62 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=52.2
Q ss_pred eehHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH-
Q 002460 661 LWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP---DSVTF--IGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS- 734 (919)
Q Consensus 661 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~- 734 (919)
-.|.||--|.-+..+.+|.+.|.. +.|+.| |..++ ..-+......|++++|++..+..... -+.-|.+.+-
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 445666666666556666666644 334555 22222 23345567788888888877766443 3333432222
Q ss_pred ----HHHHHHhhcCCHHHHHHHHHh
Q 002460 735 ----FLVDALGRAGRTKEAGELILS 755 (919)
Q Consensus 735 ----~li~~~~r~g~~~eA~~~~~~ 755 (919)
.+|. +.|+|..++|+++.+.
T Consensus 105 Lq~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHH-HHHhhhHHHHHHHHHH
Confidence 2222 4588899999998876
No 464
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.12 E-value=7.7e+02 Score=25.08 Aligned_cols=202 Identities=17% Similarity=0.185 Sum_probs=109.1
Q ss_pred CHHHHHHHhccCCC--C-----ChhhHHHHHHHHHHcCChhHHHHHHHHHHh---cCCC--CCHhHHHHHHHHHcccccH
Q 002460 542 AMVDAQSIFNDIPA--P-----DDVAWTTMISGCVDNGEEDLALSIYHQMRL---SGVV--PDEFTFAILVKASSCLTAL 609 (919)
Q Consensus 542 ~~~~A~~~f~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~ 609 (919)
.+++|..-|++..+ + .-.+.-.+|..+.+.|++++.++.|.+|+. ..+. -+..+.++++.-.+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 55666666655432 1 122334567777788888888887777753 1121 2344566666655555555
Q ss_pred HHHHHHHHHHHH----c-CCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC------------C---CeeeehHHHHHH
Q 002460 610 EQGRQIHANLIK----L-DCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM------------R---NTVLWNAMLVGL 669 (919)
Q Consensus 610 ~~a~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~~ 669 (919)
+.-.++++--.+ . +-..=..+-+-|...|...|.+.+-.++++++.. + -...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 544444432221 1 0000011223466777777777777777776641 1 123566677888
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCC--CCCh---hHHHHHHH
Q 002460 670 AQHGNGEETLKLFEDMKAHG-VEPDSVTFIGVLSACS-----YTGLVSEAYENFHLMREKYGI--EPEV---EHYSFLVD 738 (919)
Q Consensus 670 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~y~~li~ 738 (919)
...++-.+-..+|++.+.-. --|.+ ....++.-|. +.|.+++|..-|-+.-..|.- .|.. --|..|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888788888888776522 12333 3344555553 467777766433333222221 2221 23555666
Q ss_pred HHhhcC
Q 002460 739 ALGRAG 744 (919)
Q Consensus 739 ~~~r~g 744 (919)
++.++|
T Consensus 281 MLmkS~ 286 (440)
T KOG1464|consen 281 MLMKSG 286 (440)
T ss_pred HHHHcC
Confidence 676665
No 465
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=24.08 E-value=24 Score=29.33 Aligned_cols=12 Identities=42% Similarity=0.994 Sum_probs=9.9
Q ss_pred cccCCccCCCCC
Q 002460 907 HLRDGMCPCADN 918 (919)
Q Consensus 907 ~f~~g~csc~d~ 918 (919)
-...|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 567889999886
No 466
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.53 E-value=4e+02 Score=30.24 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCC--CChh---hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCHhHHHHHHHHHcc
Q 002460 531 SGILDMYVKCGAMVDAQSIFNDIPA--PDDV---AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSC 605 (919)
Q Consensus 531 ~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 605 (919)
..|+.-|.+++++++|..++..|.= -... +.+.+.+.+.+..-..+....++.++-.=..|....-..+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~----- 486 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV----- 486 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH-----
Confidence 3577789999999999999999862 2233 34445556666655556666666555432222221111111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 002460 606 LTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDMRN 658 (919)
Q Consensus 606 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 658 (919)
.+-+..+.+...+ +.+.+.+.+++++|..+--++..+|
T Consensus 487 ---~ey~d~V~~~aRR------------fFhhLLR~~rfekAFlLAvdi~~~D 524 (545)
T PF11768_consen 487 ---LEYRDPVSDLARR------------FFHHLLRYQRFEKAFLLAVDIGDRD 524 (545)
T ss_pred ---HHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHhccchH
Confidence 1222233333322 4455566677888877765555444
No 467
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=23.10 E-value=37 Score=36.18 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=21.0
Q ss_pred HHhHhhhhHHHHHHHhhccC-CCCCcEEEE
Q 002460 868 ERALYYHSEKLARAYGLIST-PPSSVILSN 896 (919)
Q Consensus 868 ~~~~~~hse~la~~~~~~~~-~~~~~~~~~ 896 (919)
+..=..+.-|+|+|+++|.+ |||...|.-
T Consensus 13 ~~~wyl~tsKlAlAlAIIrsKPpg~s~Rey 42 (375)
T PF13971_consen 13 QLSWYLKTSKLALALAIIRSKPPGKSSREY 42 (375)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 33345577899999999976 778665543
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.98 E-value=6.9e+02 Score=24.20 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCchhhcHHHHHHHHcCCHHHHHHHHHhCC------CCCeeeehHHHH-HHHhcCC--HHHHHH
Q 002460 610 EQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD------MRNTVLWNAMLV-GLAQHGN--GEETLK 680 (919)
Q Consensus 610 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~ 680 (919)
+++.++-..+.. ++..+-.....|++++|..-++.+. ++-...|+.+.. +++.++. +-+|..
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHHcCCC-------CChhHHHHHHHH----------HhccCCHHHHHHHHHHhHHhc
Q 002460 681 LFEDMKAHGVE-------PDSVTFIGVLSA----------CSYTGLVSEAYENFHLMREKY 724 (919)
Q Consensus 681 ~~~~m~~~g~~-------p~~~t~~~ll~a----------~~~~g~~~~a~~~~~~m~~~~ 724 (919)
++.-....+++ |...-.+.+.++ ....|++++|.++++-|..-|
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
No 469
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.97 E-value=9e+02 Score=25.42 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHhhcCCHHHHHH
Q 002460 674 NGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYS--FLVDALGRAGRTKEAGE 751 (919)
Q Consensus 674 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~--~li~~~~r~g~~~eA~~ 751 (919)
-..+|+++|++.++.| ..+|+ --..+.+.|...+|. . .-..++.+|- .|.-.-.+.|++.||.+
T Consensus 231 Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~~~da~------~---rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG----ETIYR-QSQQCQHQSPQHEAQ------L---RRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhccchhhh------h---hcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3566777777776643 22333 222344444433332 1 1123333442 23333446899999999
Q ss_pred HHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCCch
Q 002460 752 LILSM-PFEASA---SMHRALLGACRVQGDTETGKWVAEKLMAL-EPFDSSA 798 (919)
Q Consensus 752 ~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~ 798 (919)
.++.+ +..|-. .+...|+.+|....-+.....++-+.-++ .|..+..
T Consensus 297 ~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~i 348 (556)
T KOG3807|consen 297 IMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAI 348 (556)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHH
Confidence 99886 334422 34556777776554444444444444443 3544433
No 470
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=22.86 E-value=41 Score=21.52 Aligned_cols=10 Identities=50% Similarity=0.796 Sum_probs=8.2
Q ss_pred HHHHHHhhcc
Q 002460 877 KLARAYGLIS 886 (919)
Q Consensus 877 ~la~~~~~~~ 886 (919)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 5789999885
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.97 E-value=1.1e+03 Score=25.86 Aligned_cols=52 Identities=12% Similarity=-0.115 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHH----HHHHHHhc--cCCHHHHHHHHHH
Q 002460 668 GLAQHGNGEETLKLFEDMKAHGVEPDSVTFI----GVLSACSY--TGLVSEAYENFHL 719 (919)
Q Consensus 668 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~--~g~~~~a~~~~~~ 719 (919)
.+.+.+++..|.++|+++.+..++|+...+. .+..+|.. .-+.++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3456778999999999999876666554433 33333332 4467788888874
No 472
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.79 E-value=5e+02 Score=23.07 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHH
Q 002460 677 ETLKLFEDMKAHGVEPDSV-TFIGVLSACSYTGLVSEAYENFH 718 (919)
Q Consensus 677 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 718 (919)
.+.++|+.|...|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555444332 34444444555555555555554
No 473
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.48 E-value=8.2e+02 Score=28.53 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH
Q 002460 459 TWNAMIFGYILSNNSHKALELFSHM 483 (919)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m 483 (919)
.+..++.+.. .|+...++.....+
T Consensus 300 ~~e~~~~~i~-~~d~~~vL~~~~~~ 323 (566)
T PF07575_consen 300 PLEQILLAIF-EGDIESVLKEISSL 323 (566)
T ss_dssp TTHHHHHHHH-TS--GGGHHHHHHH
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHH
Confidence 3444443333 56666666666554
No 474
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.46 E-value=5e+02 Score=22.22 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=11.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 002460 564 MISGCVDNGEEDLALSIYHQMR 585 (919)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~m~ 585 (919)
++..|...++.++|...+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4445555555555555555543
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.93 E-value=1e+03 Score=25.30 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHh------ccCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHhhcCCH
Q 002460 674 NGEETLKLFEDMKAHGVEPDSVTFIGVLSACS------YTGLVSEAYENFHLMREKYGIEPE-VEHYSFLVDALGRAGRT 746 (919)
Q Consensus 674 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~r~g~~ 746 (919)
-+++++.++++....+. |.....-..|.+|- ..-+|.....+|+.+.. +.|+ +.+.|--+- ++..--.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVA-la~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVA-LAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHH-HHHhhhH
Confidence 35788888988888864 88777777776653 23467777788887754 4555 333443332 3333335
Q ss_pred HHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 002460 747 KEAGELILSMPFEA----SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSA 798 (919)
Q Consensus 747 ~eA~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 798 (919)
+.++..++.+..+| -...|..-.+.+.+-|..++|...|++++++.++.+..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 66677777664333 22345555666888899999999999999998865443
No 476
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.69 E-value=1e+03 Score=25.35 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHhccCC
Q 002460 692 PDSVTFIGVLSACSYTGL 709 (919)
Q Consensus 692 p~~~t~~~ll~a~~~~g~ 709 (919)
||..+...++.|.+....
T Consensus 228 ~d~~~~~a~lRAls~~~~ 245 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPA 245 (340)
T ss_pred CCHHHHHHHHHHHcCCCc
Confidence 444444444444444333
No 477
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.37 E-value=1.2e+03 Score=26.08 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=66.3
Q ss_pred HHHHHcCCHHHHHHHHHhCC---CC---------CeeeehHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCh--
Q 002460 636 DMYAKCGNIEDAYILFKQMD---MR---------NTVLWNAMLVGLAQHGNGEETLKLFEDMKA-------HGVEPDS-- 694 (919)
Q Consensus 636 ~~y~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-- 694 (919)
..+.-.|++.+|.+++.... .+ .-..||.|.-.+.+.|.+.-+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888877553 11 234578887777777777777777766653 5666642
Q ss_pred ---------hHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 002460 695 ---------VTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDAL 740 (919)
Q Consensus 695 ---------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 740 (919)
.+|+ ..-.+.+.|++-.|.+.|......|.-.| ..|-.|...+
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nP--rlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNP--RLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCc--HHHHHHHHHH
Confidence 2333 23357889999999999998888654444 4455444443
No 478
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.32 E-value=1e+03 Score=25.00 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCC----CCCchhhcHHHHHHHHcCCHHHHHHHHHhCCC-CCeeeehHHHHHHHhcCCHHHHHHHHH
Q 002460 609 LEQGRQIHANLIKLDC----SSDPFVGISLVDMYAKCGNIEDAYILFKQMDM-RNTVLWNAMLVGLAQHGNGEETLKLFE 683 (919)
Q Consensus 609 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 683 (919)
.+.+.+.+......+. ..++.....+.....+.|..++-..+++.... ++......++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4555556655554311 22333334444444455554444444443332 234444555555555555555555555
Q ss_pred HHHHc
Q 002460 684 DMKAH 688 (919)
Q Consensus 684 ~m~~~ 688 (919)
.....
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 55553
Done!