Query 002460
Match_columns 919
No_of_seqs 711 out of 5129
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 16:05:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002460.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1182-1186//hhsearch_pdb/002460hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 340.2 35.4 523 96-808 61-596 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 331.3 37.7 481 204-826 63-580 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 224.6 17.6 183 120-344 27-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 220.9 18.4 64 145-208 11-75 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 201.2 37.7 177 630-810 205-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 195.4 40.0 350 465-825 7-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 185.0 30.7 226 560-826 239-479 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 184.5 30.5 239 527-803 237-490 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 180.5 33.5 317 459-806 28-373 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 179.8 31.4 228 561-826 246-492 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=340.22 Aligned_cols=523 Identities=9% Similarity=-0.068 Sum_probs=313.0
Q ss_pred HHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 99870799147999851099999315999999998169999889468999999988569899944389899986437972
Q 002460 96 TMYSRCGSLVYARRLFDKMPDRDLISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGYV 175 (919)
Q Consensus 96 ~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 175 (919)
..+.+.|.+..++..|+.++.+++..|+.++.+|.+.| ++++|+.+|.+|.. ..|+..++..+..++...|++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 133 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-----QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDY 133 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCH
T ss_conf 56655676678877546633789999999999998745-----83479999999996--089935799999999974769
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 25889999999957887475788999998814991689999821799991209999999997599138999999978879
Q 002460 176 WASETVHGYALKIGLVWDEFVSGALVNIYSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSG 255 (919)
Q Consensus 176 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g 255 (919)
+.|..+++.+... +++..+++.++.+|.++|++++|..+|+++...+... .++.+.+..
T Consensus 134 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~-------------- 192 (597)
T 2xpi_A 134 ARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ-------------- 192 (597)
T ss_dssp HHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC--------------
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCC--------------
T ss_conf 9999999987335--4565089999999998866999999984248863223-----234334321--------------
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH-H
Q ss_conf 888902488787786310102478999999999651599972105567676641399133899999988605777704-4
Q 002460 256 LCPDDESVQCVLGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSV-T 334 (919)
Q Consensus 256 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t 334 (919)
......+..+|+.++.+|.+.|++++|.+.|++|.+.+ |+.. .
T Consensus 193 ----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 193 ----------------------------------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp ----------------------------------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred ----------------------------------CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CHHHHH
T ss_conf ----------------------------------12351258999998899998399899999999999729--325699
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88876653078883679999999998278766227768999967128667877754569999995138830013468999
Q 002460 335 FLVALAAVAGTDNLNLGQQIHGTTLKSGFYSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIH 414 (919)
Q Consensus 335 ~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 414 (919)
+..+.......+..+. ..+ . ..+ +
T Consensus 237 ~~~l~~~~~~~~~~~~-~~~-~---~l~---------------------------------------------------~ 260 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEW-DLV-L---KLN---------------------------------------------------Y 260 (597)
T ss_dssp HHHHHHTTCSCHHHHH-HHH-H---HSC---------------------------------------------------T
T ss_pred HHHHHHHHCCCCHHHH-HHH-H---HCC---------------------------------------------------C
T ss_conf 9999985034615678-999-8---657---------------------------------------------------7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC--CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9997608887526798999989815998899999830899--99111999999999279915999999997878999897
Q 002460 415 VHAIKNDTVADSFVSTALIDVYCRNGSMAEAEYLFENKDG--FDLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDE 492 (919)
Q Consensus 415 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 492 (919)
..+...+......+++.++..|.+.|++++|..+|+++.. ++..+|+.++..+.+.|++++|+.+|+++...+ +.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 339 (597)
T 2xpi_A 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNL 339 (597)
T ss_dssp HHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCH
T ss_conf 423443088999999999999807313999999998764388309999999999998468999999999999729-5537
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 58999999970317658899999999990998881579899999998399999999801099998425999999999839
Q 002460 493 ITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPAPDDVAWTTMISGCVDNG 572 (919)
Q Consensus 493 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 572 (919)
.++..++..+...|+.++|..++..+.+.. +.+ ..+|+.++..|.+.|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-------------------------------~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK-------------------------------AVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS-------------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCC-------------------------------HHHHHHHHHHHHHHC
T ss_conf 999999999998277779999999998518-354-------------------------------799999999999835
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 93699999999986699988968999999970324289999999999981899971135079999998099999999998
Q 002460 573 EEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFK 652 (919)
Q Consensus 573 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (919)
++++|.++|+++.+.. +.+...++.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD------------------------------------PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6999999999998729------------------------------------7778999999999997577799999999
Q ss_pred HCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CC
Q ss_conf 078---798341067899999659977999999999986999883679999999841599999999999959841---99
Q 002460 653 QMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKY---GI 726 (919)
Q Consensus 653 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~ 726 (919)
++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..++..+...|++++|.++|+++.+.. +.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998681343899999999998579999999999999848-887679999999999818999999999999985323454
Q ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 989--328999999986229989999999939-9999-998999999999950987999999999983099997218789
Q 002460 727 EPE--VEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLL 802 (919)
Q Consensus 727 ~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 802 (919)
.|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++.++..|
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 53549999999999999804799999999999973899738999999999981789999999999972088874899999
Q ss_pred HHHHHH
Q ss_conf 999863
Q 002460 803 SNIFAA 808 (919)
Q Consensus 803 ~~~y~~ 808 (919)
+++|..
T Consensus 591 ~~~~~~ 596 (597)
T 2xpi_A 591 KRALEE 596 (597)
T ss_dssp HHTTC-
T ss_pred HHHHHC
T ss_conf 998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=331.26 Aligned_cols=481 Identities=9% Similarity=-0.077 Sum_probs=369.5
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88149916899998217999912099999999975991389999999788798889024887877863101024789999
Q 002460 204 YSKFGKIREAKFLFDGMQERDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCVLGVISDLGKRHEEQVQA 283 (919)
Q Consensus 204 ~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 283 (919)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|..+|++|.. ..|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~----------------------- 117 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNP----------------------- 117 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCH-----------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCC-----------------------
T ss_conf 65567667887754663378999999999999874583479999999996--08993-----------------------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999651599972105567676641399133899999988605777704488876653078883679999999998278
Q 002460 284 YAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAGTDNLNLGQQIHGTTLKSGF 363 (919)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~ 363 (919)
.+|+.++..+.+.|++++|..+|+++... .+
T Consensus 118 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--------------------------------- 148 (597)
T 2xpi_A 118 --------------NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NR--------------------------------- 148 (597)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GT---------------------------------
T ss_pred --------------HHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CC---------------------------------
T ss_conf --------------57999999999747699999999987335--45---------------------------------
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 76622776899996712866787775456999999513883001346899999976088875267989999898159988
Q 002460 364 YSAVIVGNSLINMYSKMGCVCGLRTDQFTLASVLRASSSLPEGLHLSKQIHVHAIKNDTVADSFVSTALIDVYCRNGSMA 443 (919)
Q Consensus 364 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 443 (919)
+..+++.++.+|.+.|+++
T Consensus 149 -------------------------------------------------------------~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 149 -------------------------------------------------------------SSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHTTCHH
T ss_pred -------------------------------------------------------------CHHHHHHHHHHHHHHHHHH
T ss_conf -------------------------------------------------------------6508999999999886699
Q ss_pred HHHHHHHCCCCC-------------------CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q ss_conf 999998308999-------------------91119999999992799159999999978789998975-8999999970
Q 002460 444 EAEYLFENKDGF-------------------DLATWNAMIFGYILSNNSHKALELFSHMHTSGERLDEI-TIATAVKACG 503 (919)
Q Consensus 444 ~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~ 503 (919)
+|..+|+++... +..+|+.++.+|.+.|++++|+..|++|.+.+ |+.. .+..+...+.
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHC
T ss_conf 999998424886322323433432112351258999998899998399899999999999729--325699999998503
Q ss_pred CCCCHHHH--HHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 31765889--999-99999909988815798999999983999999998010999--98425999999999839936999
Q 002460 504 CLLMLKQG--KQM-HAYAMKSGFELDLCVSSGILDMYVKCGAMVDAQSIFNDIPA--PDDVAWTTMISGCVDNGEEDLAL 578 (919)
Q Consensus 504 ~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 578 (919)
..+..... ..+ +..+...+......+++.++..|.+.|++++|..+|+++.+ ++..+|+.++.+|.+.|++++|+
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 46156789998657742344308899999999999980731399999999876438830999999999999846899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCC---
Q ss_conf 99999986699988968999999970324289999999999981899971135079999998099999999998078---
Q 002460 579 SIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD--- 655 (919)
Q Consensus 579 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 655 (919)
.+|++|...+ +.+..++..++..+...|+.++|..++..+.+.. +.+...++.++.+|.++|++++|.++|+++.
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 9999999729-5537999999999998277779999999998518-3547999999999998356999999999998729
Q ss_pred CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 79834106789999965997799999999998699988367999999984159999999999995984199989328999
Q 002460 656 MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPDSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPEVEHYSF 735 (919)
Q Consensus 656 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 735 (919)
..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+...|..
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 480 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNE 480 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_conf 7778999999999997577799999999999868-134389999999999857999999999999984--8887679999
Q ss_pred HHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999986229989999999939-------99999--989999999999509879999999999830999972187899998
Q 002460 736 LVDALGRAGRTKEAGELILSM-------PFEAS--ASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 736 li~~~~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 806 (919)
++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|..+|++++|...++++++++|+++.+|..++++|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999981899999999999998532345453549999999999999804799999999999973899738999999999
Q ss_pred HHCCCCCHHHHHHHHHHHCC
Q ss_conf 63289214999999998299
Q 002460 807 AAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~~ 826 (919)
...|++++|.+.++++.+..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCHHHHHHHHHHHHHCC
T ss_conf 98178999999999997208
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=224.60 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCC
Q ss_conf 1599999999816999988946899999998856989994438989998643797---------2258899999999578
Q 002460 120 ISWNSILAAYAHSGEGNAENVTEGFRLFRSLRESITFTSRLTLAPLLKLCLSSGY---------VWASETVHGYALKIGL 190 (919)
Q Consensus 120 ~~~n~li~~~~~~g~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~g~ 190 (919)
..++.+|.+|++.| ++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|.+.|+
T Consensus 27 ~~l~~~id~c~k~G-----~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKG-----DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSC-----CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999998598-----9999999999999818998783999999999857830433321249999999999998089
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC----CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 87475788999998814991689999821799----99120999999999759913899999997887988890248878
Q 002460 191 VWDEFVSGALVNIYSKFGKIREAKFLFDGMQE----RDVVLWKVMLRAYAENGFGEEVFHLFVDLHRSGLCPDDESVQCV 266 (919)
Q Consensus 191 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 266 (919)
.||..+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99899999999999846977889999999997289886111048999999888999999999999862999999999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 778631010247899999999965159997210556767664139913389999998860577770448887665307
Q 002460 267 LGVISDLGKRHEEQVQAYAIKLLLYNNNSNVVLWNKKLSGYLQVGDNHGAIECFVNMIRSNVQYDSVTFLVALAAVAG 344 (919)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 344 (919)
|.+|++.|++++|.++|++|.+.|..|+..||++++..++.
T Consensus 182 -------------------------------------i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 -------------------------------------LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -------------------------------------HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred -------------------------------------HHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf -------------------------------------99985389899999999999994899699999999999830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=220.85 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999998856989994-4389899986437972258899999999578874757889999988149
Q 002460 145 RLFRSLRESITFTSR-LTLAPLLKLCLSSGYVWASETVHGYALKIGLVWDEFVSGALVNIYSKFG 208 (919)
Q Consensus 145 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 208 (919)
.+..++.+.+..+.+ ..+..+|.+|++.|+++.|.++++.|.+.|+.||..+||+||.+|++.+
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~ 75 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE 75 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999998266689799999999999859899999999999998189987839999999998578
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=201.20 Aligned_cols=177 Identities=14% Similarity=0.151 Sum_probs=103.9
Q ss_pred HHCHHHHHHHHCCCHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 35079999998099999999998078---79834106789999965997799999999998699988-367999999984
Q 002460 630 VGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SVTFIGVLSACS 705 (919)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~ 705 (919)
.+..+...+...|++++|...|++.. ..+..+|..++..+...|++++|+..|+++.+. .|+ ..++..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_conf 99999999998578999999999998529687899999999999868899999999999864--9998899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 159999999999995984199989328999999986229989999999939-9999-99899999999995098799999
Q 002460 706 YTGLVSEAYENFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM-PFEA-SASMHRALLGACRVQGDTETGKW 783 (919)
Q Consensus 706 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 783 (919)
..|++++|...++++.+. .+.+...+..++.++.+.|++++|...++++ ...| +...+..+...+...|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 869979999999999864--944499999999999984899999999999986098739999779999998688899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 999998309999721878999986328
Q 002460 784 VAEKLMALEPFDSSAYVLLSNIFAAAN 810 (919)
Q Consensus 784 ~~~~~~~l~p~~~~~~~~l~~~y~~~g 810 (919)
.++++++++|+++.+|..++.+|...|
T Consensus 361 ~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999998619997899985999998745
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=195.39 Aligned_cols=350 Identities=15% Similarity=0.100 Sum_probs=272.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9999279915999999997878999897-589999999703176588999999999909988815798999999983999
Q 002460 465 FGYILSNNSHKALELFSHMHTSGERLDE-ITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYVKCGAM 543 (919)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 543 (919)
..+.+.|++++|...+..+.+. .|+. ..+..+...+...++.+.+...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHCCCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999998010999--9-842599999999983993699999999986699988-968999999970324289999999999
Q 002460 544 VDAQSIFNDIPA--P-DDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPD-EFTFAILVKASSCLTALEQGRQIHANL 619 (919)
Q Consensus 544 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~ 619 (919)
++|...|+++.. | +...|..+...+...|++++|+..|.++.+.. |+ ...+..+...+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999987496539999999999998589999999999999759--896899999999999846899999999999
Q ss_pred HHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCCC---CCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HH
Q ss_conf 9818999711350799999980999999999980787---9834106789999965997799999999998699988-36
Q 002460 620 IKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEPD-SV 695 (919)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~ 695 (919)
.+.. +.+...+..+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..+++.... .|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
T ss_conf 8729-8978999999999998599999999999998559886799999999999857899999999999852--968789
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHH
Q ss_conf 799999998415999999999999598419998-9328999999986229989999999939-9-999998999999999
Q 002460 696 TFIGVLSACSYTGLVSEAYENFHLMREKYGIEP-EVEHYSFLVDALGRAGRTKEAGELILSM-P-FEASASMHRALLGAC 772 (919)
Q Consensus 696 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~ 772 (919)
++..+..++...|++++|...|+.+... .| +...|..++..+.+.|++++|.+.++++ . .+.+...|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999868899999999999864---9998899999999999869979999999999864944499999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 95098799999999998309999721878999986328921499999999829
Q 002460 773 RVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRK 825 (919)
Q Consensus 773 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 825 (919)
...|++++|...+++++++.|+++.++..++.+|...|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=184.95 Aligned_cols=226 Identities=12% Similarity=-0.007 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHH
Q ss_conf 59999999998399369999999998669998896899999997032428999999999998189997113507999999
Q 002460 560 AWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYA 639 (919)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 639 (919)
.|..+...+...|++++|+..|+++.... |+...+ ..++..|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~-----------------------------------~~l~~~~~ 281 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY-----------------------------------IYMALIMA 281 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHH-----------------------------------HHHHHHHH
T ss_conf 99999999998789999999999998638--648999-----------------------------------99999999
Q ss_pred HCCCHHHHHHHHHHCCC---CCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 80999999999980787---983410678999996599779999999999869998-83679999999841599999999
Q 002460 640 KCGNIEDAYILFKQMDM---RNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYE 715 (919)
Q Consensus 640 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 715 (919)
..|++++|...++.+.. .+...|..+...+...|++++|+..++++.+. .| +...+..+...+...|++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8888999999999986138677899999999999807799999999999873--85028999999999998689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHH
Q ss_conf 99995984199989328999999986229989999999939----99999----9899999999995---0987999999
Q 002460 716 NFHLMREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEAS----ASMHRALLGACRV---QGDTETGKWV 784 (919)
Q Consensus 716 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~ 784 (919)
+++.+... .+.+...+..++..+.+.|++++|...++++ +..+. ...|..+...+.. .|+++.|...
T Consensus 360 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999987--5467789999999998788999999999999976123321789999999999998663325888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 999983099997218789999863289214999999998299
Q 002460 785 AEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 785 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 826 (919)
+++++++.|+++.++..++.+|...|++++|...+++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 999987585558999999999998257999999999998766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=184.48 Aligned_cols=239 Identities=11% Similarity=-0.015 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 1579899999998399999999801099--99842599999999983993699999999986699988968999999970
Q 002460 527 LCVSSGILDMYVKCGAMVDAQSIFNDIP--APDDVAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASS 604 (919)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 604 (919)
..++..+...+...|++++|...|++.. .|+...|..+...+...|++++|+..++++..... .+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-------- 307 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVY-------- 307 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHH--------
T ss_conf 99999999999987899999999999986386489999999999988889999999999861386-778999--------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHH
Q ss_conf 324289999999999981899971135079999998099999999998078---79834106789999965997799999
Q 002460 605 CLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKL 681 (919)
Q Consensus 605 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 681 (919)
..+...|...|++++|...|+.+. ..+...|..+...+...|++++|+..
T Consensus 308 ---------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 308 ---------------------------YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp ---------------------------HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf ---------------------------99999999807799999999999873850289999999999986899999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHH
Q ss_conf 99999869998-8367999999984159999999999995984199989----3289999999862---29989999999
Q 002460 682 FEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHLMREKYGIEPE----VEHYSFLVDALGR---AGRTKEAGELI 753 (919)
Q Consensus 682 ~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~ 753 (919)
++++.+. .| +...+..+...+...|++++|...++.+.....-.+. ...+..++..+.. .|++++|...+
T Consensus 361 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999987--54677899999999987889999999999999761233217899999999999986633258889999999
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 939-9999-9989999999999509879999999999830999972187899
Q 002460 754 LSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLS 803 (919)
Q Consensus 754 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 803 (919)
+++ ...| +...+..+...+...|+.++|...+++++++.|+++..+..+.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9998758555899999999999825799999999999876614688999999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=180.53 Aligned_cols=317 Identities=12% Similarity=0.031 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 19999999992799159999999978789998975899999997031765889999999999099888157989999999
Q 002460 459 TWNAMIFGYILSNNSHKALELFSHMHTSGERLDEITIATAVKACGCLLMLKQGKQMHAYAMKSGFELDLCVSSGILDMYV 538 (919)
Q Consensus 459 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 538 (919)
.|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|+.+.|...+..+++.+ +.+..++..+...|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
T ss_conf 99999999998799999999999999849-7168999999999998799799999999998449-874899999999999
Q ss_pred HCCCHHHHHHHHCCCCC--C-CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 83999999998010999--9-84---259999999998399369999999998669998896899999997032428999
Q 002460 539 KCGAMVDAQSIFNDIPA--P-DD---VAWTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQG 612 (919)
Q Consensus 539 ~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 612 (919)
+.|++++|...|+++.+ | +. ..|..++..+... .+......+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHCCCHHHH
T ss_conf 869999999999999724999701688999999999999-----------------------999999999986899999
Q ss_pred HHHHHHHHHCCCCCCCHHHCHHHHHHHHCCCHHHHHHHHHHCC---CCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999981899971135079999998099999999998078---7983410678999996599779999999999869
Q 002460 613 RQIHANLIKLDCSSDPFVGISLVDMYAKCGNIEDAYILFKQMD---MRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHG 689 (919)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 689 (919)
...+..+.+.. +.+...+..++.+|.+.|++++|...|+++. ..+..+|..++..|...|++++|+..|+++.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 239 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-- 239 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
T ss_conf 99999999868-897699999999998779999999999999986889879999999999975999999999999987--
Q ss_pred CCCCHHH-HHHH------------HHHHHCCCCHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 9988367-9999------------99984159999999999995984199989-----3289999999862299899999
Q 002460 690 VEPDSVT-FIGV------------LSACSYTGLVSEAYENFHLMREKYGIEPE-----VEHYSFLVDALGRAGRTKEAGE 751 (919)
Q Consensus 690 ~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~ 751 (919)
..|+... +..+ ...+...|++++|..+|+.+... .|+ ..++..++.++.+.|++++|..
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 59980899999999999999999999998717999999999999850---873368999999999999998788999999
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99939-9999-9989999999999509879999999999830999972187899998
Q 002460 752 LILSM-PFEA-SASMHRALLGACRVQGDTETGKWVAEKLMALEPFDSSAYVLLSNIF 806 (919)
Q Consensus 752 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 806 (919)
.++++ ...| +...|..++.+|...|++++|...++++++++|+++.++..++.+.
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998848454899999999998703799999999999885935299999999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=179.78 Aligned_cols=228 Identities=11% Similarity=-0.017 Sum_probs=119.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHH
Q ss_conf 99999999983993699999999986699988968999999970324289999999999981899971135079999998
Q 002460 561 WTTMISGCVDNGEEDLALSIYHQMRLSGVVPDEFTFAILVKASSCLTALEQGRQIHANLIKLDCSSDPFVGISLVDMYAK 640 (919)
Q Consensus 561 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 640 (919)
|..+...+...|++++|+..|.+.... .|+...+..+...+...|+++.|...+..+.+... .+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----------- 311 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPP----------- 311 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHH-----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCHH-----------
T ss_conf 999999987545578999999999866--98746999999999980379999999999754599-9879-----------
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 0999999999980787983410678999996599779999999999869998-836799999998415999999999999
Q 002460 641 CGNIEDAYILFKQMDMRNTVLWNAMLVGLAQHGNGEETLKLFEDMKAHGVEP-DSVTFIGVLSACSYTGLVSEAYENFHL 719 (919)
Q Consensus 641 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~ 719 (919)
+|..+...+...|++++|+..++++.+. .| +...+..+..++...|++++|..+++.
T Consensus 312 --------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 312 --------------------TYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp --------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf --------------------9999999998668999999999999985--999779999999999984779999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHHC----------CCHHHH
Q ss_conf 5984199989328999999986229989999999939----9999----998999999999950----------987999
Q 002460 720 MREKYGIEPEVEHYSFLVDALGRAGRTKEAGELILSM----PFEA----SASMHRALLGACRVQ----------GDTETG 781 (919)
Q Consensus 720 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~a 781 (919)
+... .+.+...+..+...+...|++++|...++++ +..+ ....+..+...+... |++++|
T Consensus 370 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9873--99985999999999988378899999999998709762446888999998899999976401002247579999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 999999983099997218789999863289214999999998299
Q 002460 782 KWVAEKLMALEPFDSSAYVLLSNIFAAANQWDDVTSARGEMKRKN 826 (919)
Q Consensus 782 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 826 (919)
...++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 999999997499978999999999998514999999999999868
Done!