Query 002461
Match_columns 919
No_of_seqs 572 out of 4053
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 16:24:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002461.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1182-1186//hhsearch_pdb/002461hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 400.4 14.8 262 602-880 22-305 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 395.6 19.2 258 609-883 44-321 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 392.9 15.1 256 609-881 16-289 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 383.0 18.4 257 609-881 39-300 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 378.3 16.1 263 605-883 63-349 (353)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 371.2 17.2 269 608-883 5-299 (303)
7 4b9d_A Serine/threonine-protei 1.0 1 1 368.3 14.6 248 608-874 26-276 (350)
8 4fie_A Serine/threonine-protei 1.0 1 1 365.3 20.5 247 608-874 153-400 (423)
9 4fih_A Serine/threonine-protei 1.0 1 1 365.0 20.2 247 608-874 76-323 (346)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 362.8 22.0 251 609-881 61-316 (336)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=400.41 Aligned_cols=262 Identities=26% Similarity=0.442 Sum_probs=214.6
Q ss_pred HHHHHHHHHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCC-CCCHHHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 999987533141202074799999976------998999999505899-8913336899998740376031687676339
Q 002461 602 EIVDITNNFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEAQLLMRVHHRNLASLVGYCNDG 674 (919)
Q Consensus 602 el~~~t~~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~ 674 (919)
++...+..|.+.||+|+||+||+|.+. +++.||||+++.... ...++|.+|+.++++++|||||+++|+|.+.
T Consensus 22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~ 101 (308)
T 4gt4_A 22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD 101 (308)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 28788885866913588848999998577658888699999988014968999999999999858998987736499889
Q ss_pred CEEEEEEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE
Q ss_conf 90899998346888234420012--------------3468967699999999999999881699993530364330785
Q 002461 675 GNVGLVYEYMAYGNLKQYLFDET--------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILL 740 (919)
Q Consensus 675 ~~~~LV~E~~~~GsL~~~L~~~~--------------~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILl 740 (919)
+..++|+||+++|+|.++|+... ...++|..+++|+.|+|+||.||| +++++||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCEEE
T ss_conf 9889999818999499999862765433332211112468999999999999999999998---6899778736230688
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHH
Q ss_conf 8898489960376423488878743115545865337443247889941468999999999992-999753487862000
Q 002461 741 NEKMQAKLADFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIV 819 (919)
Q Consensus 741 d~~~~vkI~DFGla~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~lv 819 (919)
++++.+||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||... ....+.
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~-~~~~~~ 257 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY-SNQDVV 257 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC-CHHHHH
T ss_pred CCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CHHHHH
T ss_conf 7999789887602023367774047345125776569899827999963000157999999996899999998-999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1223322368742233620004899367999999999529899899999999999999977
Q 002461 820 NRVCPFLERGDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCL 880 (919)
Q Consensus 820 ~~v~~~~~~~~l~~iiD~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~ 880 (919)
+.+. .+.. ...+..+...+.+++.+||+.+|++||+|.||+++|+...
T Consensus 258 ~~i~----~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 258 EMIR----NRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHHH----TTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHHH----CCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 9998----1998---------9996203699999999975879657929999999998531
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.61 Aligned_cols=258 Identities=27% Similarity=0.437 Sum_probs=213.9
Q ss_pred HHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 33141202074799999976------998999999505899891333689999874037603168767633990899998
Q 002461 609 NFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYE 682 (919)
Q Consensus 609 ~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E 682 (919)
.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+....++|||
T Consensus 44 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E 123 (329)
T 4aoj_A 44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 123 (329)
T ss_dssp EEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 88779714778489989987866577896999999775797999999999999985899899969899998998999998
Q ss_pred ECCCCCHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEE
Q ss_conf 346888234420012-------------3468967699999999999999881699993530364330785889848996
Q 002461 683 YMAYGNLKQYLFDET-------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLA 749 (919)
Q Consensus 683 ~~~~GsL~~~L~~~~-------------~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~ 749 (919)
|+++|+|.++++... ...++|.+++.|+.|+|+||+||| +++|+||||||+|||++.++.+||+
T Consensus 124 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~ 200 (329)
T 4aoj_A 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIG 200 (329)
T ss_dssp CCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEEC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEECCCCCHHHEEECCCCCEEEC
T ss_conf 2799939999986075410012211245788999999999999999999984---0884226666764898899968976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 0376423488878743115545865337443247889941468999999999992-999753487862000122332236
Q 002461 750 DFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVNRVCPFLER 828 (919)
Q Consensus 750 DFGla~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~lv~~v~~~~~~ 828 (919)
|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||.... ...+...+. .
T Consensus 201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~-~~~~~~~i~----~ 275 (329)
T 4aoj_A 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS-NTEAIDCIT----Q 275 (329)
T ss_dssp CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC-HHHHHHHHH----H
T ss_pred CCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHH----C
T ss_conf 66033365678753004764556566582654479999663001057899999828999999989-999999998----0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8742233620004899367999999999529899899999999999999977557
Q 002461 829 GDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 883 (919)
Q Consensus 829 ~~l~~iiD~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~~~ 883 (919)
+. +...+..+...+.+++.+||+.+|++||+|.||+++|+.+.+..
T Consensus 276 g~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 276 GR---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp TC---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred CC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 89---------89986446399999999974759657929999999999874588
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=392.86 Aligned_cols=256 Identities=28% Similarity=0.460 Sum_probs=211.6
Q ss_pred HHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 33141202074799999976------998999999505899891333689999874037603168767633990899998
Q 002461 609 NFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYE 682 (919)
Q Consensus 609 ~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E 682 (919)
.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|++++++++|||||+++|+|.+.+..++|||
T Consensus 16 ~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E 95 (299)
T 4asz_A 16 VLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFE 95 (299)
T ss_dssp EEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 98249820788299999987766677887999999677785899999999999985899888628799956998999998
Q ss_pred ECCCCCHHHHHHCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECC
Q ss_conf 346888234420012-----------346896769999999999999988169999353036433078588984899603
Q 002461 683 YMAYGNLKQYLFDET-----------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADF 751 (919)
Q Consensus 683 ~~~~GsL~~~L~~~~-----------~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DF 751 (919)
|+++|+|.++|+... ...++|..++.++.|+++||.||| +++|+||||||+|||++.++.+||+||
T Consensus 96 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DF 172 (299)
T 4asz_A 96 YMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDF 172 (299)
T ss_dssp CCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEECCC
T ss_conf 58999689999860864211123577788999999999999999999997---599046765776389879986898873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 76423488878743115545865337443247889941468999999999992-99975348786200012233223687
Q 002461 752 GFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVNRVCPFLERGD 830 (919)
Q Consensus 752 Gla~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~lv~~v~~~~~~~~ 830 (919)
|+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||.... ...+...+ ..+.
T Consensus 173 Gla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~-~~~~~~~i----~~~~ 247 (299)
T 4asz_A 173 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-NNEVIECI----TQGR 247 (299)
T ss_dssp SCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-HHHHHHHH----HHTC
T ss_pred CCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHH----HCCC
T ss_conf 001006788741664751347010388987079997036677889999999808999999989-99999999----8089
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 422336200048993679999999995298998999999999999999775
Q 002461 831 VRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLE 881 (919)
Q Consensus 831 l~~iiD~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~ 881 (919)
. ...+..+...+.+++.+||+.+|++||+|.+|++.|+++.+
T Consensus 248 ~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 248 V---------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp C---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred C---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 8---------89974143999999999768796689299999999987776
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.97 Aligned_cols=257 Identities=30% Similarity=0.490 Sum_probs=205.1
Q ss_pred HHCCEECEECCEEEEEEEECCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 33141202074799999976998999999505899--8913336899998740376031687676339908999983468
Q 002461 609 NFHRILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 686 (919)
Q Consensus 609 ~f~~~LG~G~fG~Vyka~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 686 (919)
.+.+.||+|+||+||+|.+. ..||||+++.... ...+.|.+|+.++++++|||||+++|+|.+ +..++||||+++
T Consensus 39 ~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 39 MLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp CEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred EEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEECCCC
T ss_conf 98449820888689999989--968999997268999999999999999985899887469999978-958999974899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88234420012346896769999999999999988169999353036433078588984899603764234888787431
Q 002461 687 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 766 (919)
Q Consensus 687 GsL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 766 (919)
|+|.++|+.. ...++|..++.|+.|+|+||+||| +++|+||||||+|||+++++.+||+|||+|+...........
T Consensus 116 GsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~ 191 (307)
T 3omv_A 116 SSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQV 191 (307)
T ss_dssp CBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----------
T ss_pred CCHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCEEE
T ss_conf 8788987524-899999999999999999999997---799527855789978889990899441575424667764031
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15545865337443247---889941468999999999992999753487862000122332236874223362000489
Q 002461 767 TSIVGTVGYLDPEYYAS---NRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANF 843 (919)
Q Consensus 767 ~~~~gt~~Y~APE~l~~---~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv~~v~~~~~~~~l~~iiD~~l~~~~ 843 (919)
....||+.|||||++.+ +.++.++|||||||++|||+||+.||........+...+.. +. ..|.+. ..
T Consensus 192 ~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~----~~----~~p~~~-~~ 262 (307)
T 3omv_A 192 EQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR----GY----ASPDLS-KL 262 (307)
T ss_dssp --CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHT----TC----CCCCST-TS
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC----CC----CCCCCC-CC
T ss_conf 5644687724987861468998786877572899999999788998999969999999965----88----888720-03
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93679999999995298998999999999999999775
Q 002461 844 DTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLE 881 (919)
Q Consensus 844 ~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~ 881 (919)
...+...+.+++.+||+.+|++||+|.||++.|+.+..
T Consensus 263 ~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 263 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 54456999999999757797689098999999999745
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=378.29 Aligned_cols=263 Identities=26% Similarity=0.438 Sum_probs=210.7
Q ss_pred HHHHHHCCEECEECCEEEEEEEECC------CCEEEEEEEECCCCC-CCHHHHHHHHHHHHCCC-CCEEEEEEEEECC-C
Q ss_conf 9875331412020747999999769------989999995058998-91333689999874037-6031687676339-9
Q 002461 605 DITNNFHRILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQ-GPKQFRTEAQLLMRVHH-RNLASLVGYCNDG-G 675 (919)
Q Consensus 605 ~~t~~f~~~LG~G~fG~Vyka~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~~L~~l~H-~NIv~l~g~~~~~-~ 675 (919)
...+.+.+.||+|+||+||+|.+.. ++.||||+++..... ..+.|.+|+.+|.+++| ||||+++|+|.+. .
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCC
T ss_conf 79959820982178959999998688854477599999976235868999999999999975799848778899994697
Q ss_pred EEEEEEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEC
Q ss_conf 0899998346888234420012--------------34689676999999999999998816999935303643307858
Q 002461 676 NVGLVYEYMAYGNLKQYLFDET--------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLN 741 (919)
Q Consensus 676 ~~~LV~E~~~~GsL~~~L~~~~--------------~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld 741 (919)
..++|||||++|+|.++|+... ...++|..++.++.|+|+||.||| +++++||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCCCCEEEC
T ss_conf 799999838989799999743566654333410110356899999999999999987676---27843574672113057
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHC
Q ss_conf 898489960376423488878743115545865337443247889941468999999999992-9997534878620001
Q 002461 742 EKMQAKLADFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVN 820 (919)
Q Consensus 742 ~~~~vkI~DFGla~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~lv~ 820 (919)
+++.+||+|||+|+.+.............||+.|||||++.+..++.++|||||||++|||+| |+.||........+..
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~ 299 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR 299 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred CCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99978979654322245688720325401466656989994699997553740689999998189999999898999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 223322368742233620004899367999999999529899899999999999999977557
Q 002461 821 RVCPFLERGDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 883 (919)
Q Consensus 821 ~v~~~~~~~~l~~iiD~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~~~ 883 (919)
.+ ..+. +...+......+.+++.+||+.+|++||+|.||++.|+.+++..
T Consensus 300 ~i----~~g~---------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 300 RL----KEGT---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp HH----HHTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HH----HCCC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99----7389---------88888657899999999976869667939999999999999875
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=371.23 Aligned_cols=269 Identities=23% Similarity=0.364 Sum_probs=200.9
Q ss_pred HHHCCEECEECCEEEEEEEECCCCEEEEEEEECCCCCCCHHH--HHHHHHHHHCCCCCEEEEEEEEECCC----EEEEEE
Q ss_conf 533141202074799999976998999999505899891333--68999987403760316876763399----089999
Q 002461 608 NNFHRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQF--RTEAQLLMRVHHRNLASLVGYCNDGG----NVGLVY 681 (919)
Q Consensus 608 ~~f~~~LG~G~fG~Vyka~~~~g~~VAVK~l~~~~~~~~~~f--~~Ei~~L~~l~H~NIv~l~g~~~~~~----~~~LV~ 681 (919)
+.+.+.||+|+||+||+|.+ .|+.||||+++... .+.+ ..|+..+.+++|||||+++|+|.+.+ ..++||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 99978984089939999999-99899999988313---366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEECCCCCEEEECCCCCEEEECCCCCCC
Q ss_conf 8346888234420012346896769999999999999988169-----99935303643307858898489960376423
Q 002461 682 EYMAYGNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGC-----KPPIIHRDVKTANILLNEKMQAKLADFGFSKI 756 (919)
Q Consensus 682 E~~~~GsL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~-----~~~iiH~DLKp~NILld~~~~vkI~DFGla~~ 756 (919)
||+++|+|.++++. ..++|..+.+++.|+++||+|||+.+ .++|+||||||+|||++.++.+||+|||+++.
T Consensus 81 Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 17899968999975---799989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-CCCCCC--
Q ss_conf 4888787--431155458653374432478------89941468999999999992999753487862000-122332--
Q 002461 757 FPAESES--HISTSIVGTVGYLDPEYYASN------RLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIV-NRVCPF-- 825 (919)
Q Consensus 757 ~~~~~~~--~~~~~~~gt~~Y~APE~l~~~------~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv-~~v~~~-- 825 (919)
....... .......||+.|||||++.+. .++.++|||||||++|||+||++|+....+..... ......
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred ---CCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---236874223362000489-9367999999999529899899999999999999977557
Q 002461 826 ---LERGDVRSIVDPRLEANF-DTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 883 (919)
Q Consensus 826 ---~~~~~l~~iiD~~l~~~~-~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~~~ 883 (919)
..........+|.+.... ..+....+.+++.+||..+|++||||.||++.|+++.+.+
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999987502579988765566589999999999976059757959999999999889875
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=368.28 Aligned_cols=248 Identities=23% Similarity=0.364 Sum_probs=203.9
Q ss_pred HHHCCEECEECCEEEEEEEE-CCCCEEEEEEEECCCCC--CCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEEC
Q ss_conf 53314120207479999997-69989999995058998--9133368999987403760316876763399089999834
Q 002461 608 NNFHRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYM 684 (919)
Q Consensus 608 ~~f~~~LG~G~fG~Vyka~~-~~g~~VAVK~l~~~~~~--~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~ 684 (919)
+.+.+.||+|+||+||+|.. .+|+.||||+++..... ..+.+.+|+.++++++|||||++++++.+.+..++||||+
T Consensus 26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~ 105 (350)
T 4b9d_A 26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC 105 (350)
T ss_dssp EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 58847970277939999998899989999998658789799999999999998779989891999999899999999488
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 68882344200123468967699999999999999881699993530364330785889848996037642348887874
Q 002461 685 AYGNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESH 764 (919)
Q Consensus 685 ~~GsL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~ 764 (919)
++|+|.+++.......+++.....++.|++.||.||| +++|+||||||+|||++.++.+||+|||+++.+.. ...
T Consensus 106 ~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~--~~~ 180 (350)
T 4b9d_A 106 EGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS--TVE 180 (350)
T ss_dssp TTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCH--HHH
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCCCHHHEEECCCCCEEECCCCCCEEECC--CCC
T ss_conf 9983999999738999978999999999999999999---89915135978997987899989764652144068--854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31155458653374432478899414689999999999929997534878620001223322368742233620004899
Q 002461 765 ISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFD 844 (919)
Q Consensus 765 ~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv~~v~~~~~~~~l~~iiD~~l~~~~~ 844 (919)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ..+...+. .+... ...
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-~~~~~~i~----~~~~~---------~~~ 246 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-KNLVLKII----SGSFP---------PVS 246 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHH----HTCCC---------CCC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH----CCCCC---------CCC
T ss_conf 10145788360399998799989599999999999999978799899699-99999998----08999---------997
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 367999999999529899899999999999
Q 002461 845 TNSVWKVAETAMECVPSISFQRPTMSHVVT 874 (919)
Q Consensus 845 ~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~ 874 (919)
......+.+++.+||..+|++||++.|+++
T Consensus 247 ~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 247 LHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 557999999999985589667908999963
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=365.30 Aligned_cols=247 Identities=22% Similarity=0.325 Sum_probs=203.8
Q ss_pred HHHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 533141202074799999976-9989999995058998913336899998740376031687676339908999983468
Q 002461 608 NNFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 686 (919)
Q Consensus 608 ~~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 686 (919)
+.+.+.||+|+||.||+|... +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..++|||||++
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38616962481848999999999989999998625546899999999999857998987168999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88234420012346896769999999999999988169999353036433078588984899603764234888787431
Q 002461 687 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 766 (919)
Q Consensus 687 GsL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 766 (919)
|+|.+++.. ..+++.....++.|++.||+||| +++|+||||||+|||++.++.+||+|||+|+.+... ....
T Consensus 233 G~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 304 (423)
T 4fie_A 233 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 304 (423)
T ss_dssp EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS--CCCB
T ss_pred CCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 828988761---69899999999999999999999---889044657877789858999898037265477788--7643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 15545865337443247889941468999999999992999753487862000122332236874223362000489936
Q 002461 767 TSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFDTN 846 (919)
Q Consensus 767 ~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv~~v~~~~~~~~l~~iiD~~l~~~~~~~ 846 (919)
...+||+.|||||++.+..|+.++|||||||++|||++|++||..... ......+.. + ..+.+. ....
T Consensus 305 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~~i~~----~-----~~~~~~--~~~~ 372 (423)
T 4fie_A 305 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAMKMIRD----N-----LPPRLK--NLHK 372 (423)
T ss_dssp CCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHH----S-----CCCCCS--CTTS
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHC----C-----CCCCCC--CCCC
T ss_conf 466647472799997799999689999999999999978799898699-999999972----7-----998876--5012
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 7999999999529899899999999999
Q 002461 847 SVWKVAETAMECVPSISFQRPTMSHVVT 874 (919)
Q Consensus 847 ~~~~l~~li~~Cl~~~P~~RPsm~eVv~ 874 (919)
....+.+++.+||..+|++||++.|+++
T Consensus 373 ~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 373 VSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986789568909999960
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=364.99 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=203.8
Q ss_pred HHHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 533141202074799999976-9989999995058998913336899998740376031687676339908999983468
Q 002461 608 NNFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 686 (919)
Q Consensus 608 ~~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 686 (919)
+++.+.||+|+||.||+|... +|+.||||+++.......+.+.+|+.+|+.++|||||++++++.+.+..++||||+++
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred CEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38707960272829999999899989999998527656899999999999867998999199999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88234420012346896769999999999999988169999353036433078588984899603764234888787431
Q 002461 687 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 766 (919)
Q Consensus 687 GsL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 766 (919)
|+|.+++.. ..+++.....++.|++.||+||| +++|+||||||+|||++.++.+||+|||+++.+... ....
T Consensus 156 g~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 227 (346)
T 4fih_A 156 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 227 (346)
T ss_dssp EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS--SCCB
T ss_pred CCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 808999871---89899999999999999999999---888355627889978879998899027575366788--7753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 15545865337443247889941468999999999992999753487862000122332236874223362000489936
Q 002461 767 TSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFDTN 846 (919)
Q Consensus 767 ~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv~~v~~~~~~~~l~~iiD~~l~~~~~~~ 846 (919)
...+||+.|||||++.+..|+.++||||+||++|||++|++||..... ......+.. +. .+.+. ....
T Consensus 228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~~i~~----~~-----~~~~~--~~~~ 295 (346)
T 4fih_A 228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAMKMIRD----NL-----PPRLK--NLHK 295 (346)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHHH----SS-----CCCCS--CGGG
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHC----CC-----CCCCC--CCCC
T ss_conf 465627582799997799999689999999999999978799898599-999999971----79-----99887--5022
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 7999999999529899899999999999
Q 002461 847 SVWKVAETAMECVPSISFQRPTMSHVVT 874 (919)
Q Consensus 847 ~~~~l~~li~~Cl~~~P~~RPsm~eVv~ 874 (919)
....+.+++.+|+..+|++||++.|+++
T Consensus 296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 296 VSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986799568909999960
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=362.76 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=203.2
Q ss_pred HHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCCC
Q ss_conf 33141202074799999976-99899999950589989133368999987403760316876763399089999834688
Q 002461 609 NFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAYG 687 (919)
Q Consensus 609 ~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~G 687 (919)
.+.++||+|+||.||+|... +|+.||||+++... ...+|+.+++.++|||||++++++.+.+..++||||+++|
T Consensus 61 ~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg 135 (336)
T 4g3f_A 61 THQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG 135 (336)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred EECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCC
T ss_conf 76868513878099999988999899999978888-----6999999998579989993999999899999999665998
Q ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCC-CEEEECCCCCCCCCCCCCCC--
Q ss_conf 823442001234689676999999999999998816999935303643307858898-48996037642348887874--
Q 002461 688 NLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKM-QAKLADFGFSKIFPAESESH-- 764 (919)
Q Consensus 688 sL~~~L~~~~~~~ls~~~~~~ia~qia~aL~yLH~~~~~~iiH~DLKp~NILld~~~-~vkI~DFGla~~~~~~~~~~-- 764 (919)
+|.+++.. ...+++.....++.|++.||+||| +++|+||||||+|||++.++ .+||+|||+++.+.......
T Consensus 136 ~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~ 210 (336)
T 4g3f_A 136 SLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210 (336)
T ss_dssp BHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---------
T ss_pred CHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHH---HCCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCCE
T ss_conf 69999987--699999999999999999999999---8890426167788799589997999627877685678765402
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -3115545865337443247889941468999999999992999753487862000122332236874223362000489
Q 002461 765 -ISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANF 843 (919)
Q Consensus 765 -~~~~~~gt~~Y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~lv~~v~~~~~~~~l~~iiD~~l~~~~ 843 (919)
.....+||+.|||||++.+..++.++|||||||++|||++|+.||....... +...+. .+.. .+ ...
T Consensus 211 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~i~----~~~~------~~-~~~ 278 (336)
T 4g3f_A 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP-LCLKIA----SEPP------PI-REI 278 (336)
T ss_dssp ---CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC-CHHHHH----HSCC------GG-GGS
T ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHH----CCCC------CC-HHC
T ss_conf 21785455802008999889998908999999999999997869989989999-999998----0899------80-025
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93679999999995298998999999999999999775
Q 002461 844 DTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLE 881 (919)
Q Consensus 844 ~~~~~~~l~~li~~Cl~~~P~~RPsm~eVv~~Le~~~~ 881 (919)
+......+.+++.+|+..+|++||++.|+++.|...++
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 86679999999999762897689599999999999975
Done!