Query 002462
Match_columns 919
No_of_seqs 661 out of 6002
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:44:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002462.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1182-1186//hhsearch_pdb/002462hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 403.4 19.2 264 534-821 41-320 (329)
2 4gt4_A Tyrosine-protein kinase 1.0 1 1 401.4 17.1 259 536-818 28-304 (308)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 400.1 16.1 263 534-820 13-289 (299)
4 3hmm_A TGF-beta receptor type- 1.0 1 1 394.2 10.5 268 535-819 4-296 (303)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 391.8 21.0 256 534-819 36-299 (307)
6 4ase_A Vascular endothelial gr 1.0 1 1 384.6 14.8 265 533-820 63-347 (353)
7 4fih_A Serine/threonine-protei 1.0 1 1 363.7 17.2 247 535-813 75-323 (346)
8 4fie_A Serine/threonine-protei 1.0 1 1 363.4 18.6 248 534-813 151-400 (423)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 362.2 14.1 255 533-820 57-316 (336)
10 3rgz_A Protein brassinosteroid 1.0 1 1 361.9 20.4 348 45-401 8-388 (768)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.43 Aligned_cols=264 Identities=21% Similarity=0.267 Sum_probs=208.6
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEE
Q ss_conf 99983233345888848999954------9961899995155310-8999999999861699984136558860488179
Q 002462 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (919)
Q Consensus 534 ~~f~~~~~ig~G~~G~Vy~g~l~------~g~~vavK~l~~~~~~-~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~ 606 (919)
.+|...+.||+|+||.||+|.+. ++..||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-~~~~~ 119 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-GRPLL 119 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998-99899
Q ss_pred EEEEECCCCCHHHHHHCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCC
Q ss_conf 9997227998100100069997--------75677799999999999999855451289999264468899600179996
Q 002462 607 LVYKYMPNGDLSSSLYRKTNTE--------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (919)
Q Consensus 607 LV~Ey~~~GsL~~~L~~~~~~~--------~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~ 678 (919)
||||||++|+|.++|+...... ....+++|.++++|+.|||+||+|||+. +||||||||+|||||+++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCC
T ss_conf 9998279993999998607541001221124578899999999999999999998408---8422666676489889996
Q ss_pred EEECCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 22488500240389985103552025777754567787799977860348999999990-99999899946899999841
Q 002462 679 VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVT-GKMGISASSDAQVKEILEQT 757 (919)
Q Consensus 679 ~ki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllT-G~~p~~~~~~~~~~~~~~~~ 757 (919)
+||+|||+++...........+...+++.|++|+......++.++|||||||+||||+| |+.||...+..+....+...
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g 276 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG 276 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 89766603336567875300476455656658265447999966300105789999982899999998999999999808
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 2331112322201102688888900699999999999871599999999989999992023232
Q 002462 758 LPYISIYDKELVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPLKV 821 (919)
Q Consensus 758 ~p~~~~~~~~~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~~~ 821 (919)
.. . ..++...++ +..++..||+.+|++||+|.+|++.|+...+.
T Consensus 277 ~~------------~-----~~p~~~~~~---~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 277 RE------------L-----ERPRACPPE---VYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp CC------------C-----CCCTTCCHH---HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred CC------------C-----CCCCCCCHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 98------------9-----986446399---99999997475965792999999999987458
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=401.40 Aligned_cols=259 Identities=20% Similarity=0.254 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCCCCEEEEEEC------CCCCEEEEEECCCCC--CHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 983233345888848999954------996189999515531--089999999998616999841365588604881799
Q 002462 536 FSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (919)
Q Consensus 536 f~~~~~ig~G~~G~Vy~g~l~------~g~~vavK~l~~~~~--~~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~L 607 (919)
+...+.||+|+||.||+|.+. ++..||||++..... ..++|.+|+.++++++|||||+++|+|.+ ++..+|
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~~l 106 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK-DQPLSM 106 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEE
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCEEEE
T ss_conf 8586691358884899999857765888869999998801496899999999999985899898773649988-998899
Q ss_pred EEEECCCCCHHHHHHCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCC
Q ss_conf 997227998100100069997---------75677799999999999999855451289999264468899600179996
Q 002462 608 VYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (919)
Q Consensus 608 V~Ey~~~GsL~~~L~~~~~~~---------~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~ 678 (919)
|||||++|+|.++|+.+.... .....++|.++++|+.|||+||+|||+. +||||||||+|||||+++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCCC
T ss_conf 9981899949999986276543333221111246899999999999999999999868---9977873623068879997
Q ss_pred EEECCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 22488500240389985103552025777754567787799977860348999999990-99999899946899999841
Q 002462 679 VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVT-GKMGISASSDAQVKEILEQT 757 (919)
Q Consensus 679 ~ki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllT-G~~p~~~~~~~~~~~~~~~~ 757 (919)
+||+|||+++...........+...+++.|++|+......++.++|||||||+||||+| |+.||.+.+..+....+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~ 263 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR 263 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTT
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
T ss_conf 89887602023367774047345125776569899827999963000157999999996899999998999999999819
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 2331112322201102688888900699999999999871599999999989999992023
Q 002462 758 LPYISIYDKELVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENP 818 (919)
Q Consensus 758 ~p~~~~~~~~~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~ 818 (919)
.. +...++..++ +..++..||+.+|++||+|++|++.|+..
T Consensus 264 ~~-----------------~~~p~~~~~~---~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 264 QV-----------------LPCPDDCPAW---VYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp CC-----------------CCCCTTCCHH---HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CC-----------------CCCCCCCHHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 98-----------------9996203699---99999997587965792999999999853
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=400.06 Aligned_cols=263 Identities=23% Similarity=0.276 Sum_probs=205.6
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEE
Q ss_conf 99983233345888848999954------9961899995155310-8999999999861699984136558860488179
Q 002462 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (919)
Q Consensus 534 ~~f~~~~~ig~G~~G~Vy~g~l~------~g~~vavK~l~~~~~~-~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~ 606 (919)
.+|...+.||+|+||.||+|.+. ++..||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-~~~~~ 91 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-GDPLI 91 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956-99899
Q ss_pred EEEEECCCCCHHHHHHCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCCEE
Q ss_conf 99972279981001000699------977567779999999999999985545128999926446889960017999622
Q 002462 607 LVYKYMPNGDLSSSLYRKTN------TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (919)
Q Consensus 607 LV~Ey~~~GsL~~~L~~~~~------~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~~k 680 (919)
||||||++|+|.++|++... .......++|.++++|+.|+|+||+|||+. +||||||||+|||+|+++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEE
T ss_conf 99985899968999986086421112357778899999999999999999999759---904676577638987998689
Q ss_pred ECCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 488500240389985103552025777754567787799977860348999999990-9999989994689999984123
Q 002462 681 LGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVT-GKMGISASSDAQVKEILEQTLP 759 (919)
Q Consensus 681 i~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllT-G~~p~~~~~~~~~~~~~~~~~p 759 (919)
|+|||+++...............+++.|++|+......++.++|||||||++|||+| |+.||...+..+....+.....
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~ 248 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV 248 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCC
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 88730010067887416647513470103889870799970366778899999998089999999899999999980898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 3111232220110268888890069999999999987159999999998999999202323
Q 002462 760 YISIYDKELVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPLK 820 (919)
Q Consensus 760 ~~~~~~~~~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~~ 820 (919)
+..++...++ +..++..||+.+|++||+|++|++.|++..+
T Consensus 249 -----------------~~~p~~~~~~---~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 249 -----------------LQRPRTCPQE---VYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp -----------------CCCCTTCCHH---HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -----------------CCCCCCCHHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf -----------------8997414399---9999999768796689299999999987776
No 4
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=394.16 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=195.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC---CEEEEEEE
Q ss_conf 998323334588884899995499618999951553108999999999861699984136558860488---17999972
Q 002462 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN---EKFLVYKY 611 (919)
Q Consensus 535 ~f~~~~~ig~G~~G~Vy~g~l~~g~~vavK~l~~~~~~~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~---~~~LV~Ey 611 (919)
++...+.||+|+||.||+|++ .|..||||+++........+..|+..+.+++|||||+++|+|.+.+. ..||||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf 899978984089939999999-9989999998831336699999999986089998870999998468872378877517
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCEEECCCCCCCEECCCCCCEEECCCCH
Q ss_conf 2799810010006999775677799999999999999855451289-----99926446889960017999622488500
Q 002462 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-----TLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (919)
Q Consensus 612 ~~~GsL~~~L~~~~~~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~-----~~~IiHrDlK~~NILld~~~~~ki~dfg~ 686 (919)
|++|+|.++|++. .++|.++++|+.++|+||+|||+++ .++||||||||+|||+|+++.+||+|||+
T Consensus 83 ~~~gsL~~~l~~~--------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGl 154 (303)
T 3hmm_A 83 HEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL 154 (303)
T ss_dssp CTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred CCCCCHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCC
T ss_conf 8999689999757--------99989999999999999999998524004789876246784208998899789984798
Q ss_pred HHHCCCCCCCE--EEEEECCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 24038998510--3552025777754567787------799977860348999999990999998999468999998412
Q 002462 687 VCAQGGDAHQS--RITRLLRLPQSSEQGSSGS------LTATCPYDVYCFGKVLLELVTGKMGISASSDAQVKEILEQTL 758 (919)
Q Consensus 687 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~t~~sDVySfGvvLlEllTG~~p~~~~~~~~~~~~~~~~~ 758 (919)
++......... ......+++.|++|+.... ..++.++||||||||||||+||+.|+....+.+ .
T Consensus 155 a~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~--------~ 226 (303)
T 3hmm_A 155 AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ--------L 226 (303)
T ss_dssp CEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCC--------C
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------C
T ss_conf 74556777732210464246646269888456545567765706766647999999987899877665223--------5
Q ss_pred CCCCCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 331112---------3222011026888889006999999999998715999999999899999920232
Q 002462 759 PYISIY---------DKELVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPL 819 (919)
Q Consensus 759 p~~~~~---------~~~~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~ 819 (919)
|+.... ......+..+|.+.......+....+..++.+||+.+|++||||.+|++.|+...
T Consensus 227 p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~ 296 (303)
T 3hmm_A 227 PYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 3100254543099999987502579988765566589999999999976059757959999999999889
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.80 Aligned_cols=256 Identities=20% Similarity=0.342 Sum_probs=198.8
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCC---CHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99983233345888848999954996189999515531---089999999998616999841365588604881799997
Q 002462 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (919)
Q Consensus 534 ~~f~~~~~ig~G~~G~Vy~g~l~~g~~vavK~l~~~~~---~~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~LV~E 610 (919)
.++...+.||+|+||.||+|++.+ .||||.++.... ..++|.+|++++++++|||||+++|+|.+ +..+||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~--~~~~iVmE 111 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK--DNLAIVTQ 111 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC--CEEEEEEE
T ss_conf 994984498208886899999899--68999997268999999999999999985899887469999978--95899997
Q ss_pred ECCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCCEEECCCCHHHHC
Q ss_conf 22799810010006999775677799999999999999855451289999264468899600179996224885002403
Q 002462 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (919)
Q Consensus 611 y~~~GsL~~~L~~~~~~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~~ki~dfg~~~~~ 690 (919)
||++|+|.++|+.... .++|.++++|+.|||+||+|||+. +||||||||+|||||+++.+||+|||+++..
T Consensus 112 y~~gGsL~~~l~~~~~------~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 112 WCEGSSLYKHLHVQET------KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp CCSSCBHHHHHHTSCC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred CCCCCCHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEEC
T ss_conf 4899878898752489------999999999999999999999779---9527855789978889990899441575424
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCC
Q ss_conf 8998510355202577775456778---7799977860348999999990999998999468-99999841233111232
Q 002462 691 GGDAHQSRITRLLRLPQSSEQGSSG---SLTATCPYDVYCFGKVLLELVTGKMGISASSDAQ-VKEILEQTLPYISIYDK 766 (919)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~sDVySfGvvLlEllTG~~p~~~~~~~~-~~~~~~~~~p~~~~~~~ 766 (919)
.............+++.|++|+... ...++.++||||||||||||+||+.||...+... ....+.....
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~------- 255 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA------- 255 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCC-------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-------
T ss_conf 6677640315644687724987861468998786877572899999999788998999969999999965888-------
Q ss_pred CCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 220110268888-89006999999999998715999999999899999920232
Q 002462 767 ELVTKIVDPSLI-IDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPL 819 (919)
Q Consensus 767 ~~~~~i~d~~l~-~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~ 819 (919)
.|.+. ......++ +..++..||+.+|++||+|.+|++.|+...
T Consensus 256 -------~p~~~~~~~~~~~~---l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 256 -------SPDLSKLYKNCPKA---MKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp -------CCCSTTSCTTSCHH---HHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred -------CCCCCCCCCCCHHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf -------88720035445699---999999975779768909899999999974
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=384.57 Aligned_cols=265 Identities=20% Similarity=0.252 Sum_probs=203.8
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEECC------CCCEEEEEECCCCCC--HHHHHHHHHHHHHCCC-CCCCCEEEEEEECCC
Q ss_conf 3999832333458888489999549------961899995155310--8999999999861699-984136558860488
Q 002462 533 TGDFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSH-ARLVPLLGHCMEREN 603 (919)
Q Consensus 533 t~~f~~~~~ig~G~~G~Vy~g~l~~------g~~vavK~l~~~~~~--~~~f~~Ei~~l~~l~H-~NiV~l~g~c~~~~~ 603 (919)
.++|...+.||+|+||.||+|.+.+ +..||||++...... .++|.+|+++|++++| ||||+++|+|.+.++
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCC
T ss_conf 79959820982178959999998688854477599999976235868999999999999975799848778899994697
Q ss_pred CEEEEEEECCCCCHHHHHHCCCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECC
Q ss_conf 179999722799810010006999---------77567779999999999999985545128999926446889960017
Q 002462 604 EKFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (919)
Q Consensus 604 ~~~LV~Ey~~~GsL~~~L~~~~~~---------~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld 674 (919)
..+||||||++|+|.++|+..... ......++|.+++.|+.|||+||+|||+. +||||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCCCCEEEC
T ss_conf 79999983898979999974356665433341011035689999999999999998767627---843574672113057
Q ss_pred CCCCEEECCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCH-HHHHH
Q ss_conf 999622488500240389985103552025777754567787799977860348999999990-9999989994-68999
Q 002462 675 DKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVT-GKMGISASSD-AQVKE 752 (919)
Q Consensus 675 ~~~~~ki~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllT-G~~p~~~~~~-~~~~~ 752 (919)
+++.+||+|||+++....+......+...+++.|++|+......++.++|||||||+||||+| |+.||.+... .....
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~ 299 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR 299 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred CCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99978979654322245688720325401466656989994699997553740689999998189999999898999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99841233111232220110268888890069999999999987159999999998999999202323
Q 002462 753 ILEQTLPYISIYDKELVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPLK 820 (919)
Q Consensus 753 ~~~~~~p~~~~~~~~~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~~ 820 (919)
.+..... +...+....+ +..++..||+.+|++||+|.+|++.|+..++
T Consensus 300 ~i~~g~~-----------------~~~p~~~~~~---~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 300 RLKEGTR-----------------MRAPDYTTPE---MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHTCC-----------------CCCCTTCCHH---HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHCCCC-----------------CCCCCCCCHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 9973898-----------------8888657899---9999999768696679399999999999998
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=363.66 Aligned_cols=247 Identities=19% Similarity=0.298 Sum_probs=197.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEE-CCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 998323334588884899995-49961899995155310-8999999999861699984136558860488179999722
Q 002462 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (919)
Q Consensus 535 ~f~~~~~ig~G~~G~Vy~g~l-~~g~~vavK~l~~~~~~-~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~LV~Ey~ 612 (919)
.|.....||+|+||.||+|.. .+|..||||+++..... .+.+.+|+++|++++|||||++++++.+ ++..|||||||
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-~~~~~ivmEy~ 153 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-GDELWVVMEFL 153 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEECCC
T ss_pred HCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCEEEEEEECC
T ss_conf 53870796027282999999989998999999852765689999999999986799899919999998-99999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCCEEECCCCHHHHCCC
Q ss_conf 79981001000699977567779999999999999985545128999926446889960017999622488500240389
Q 002462 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (919)
Q Consensus 613 ~~GsL~~~L~~~~~~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~~ki~dfg~~~~~~~ 692 (919)
++|+|.+++.+. .+++.+...|+.|++.||+|||+. +||||||||.|||++.++.+||+|||+++....
T Consensus 154 ~gg~L~~~l~~~--------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 154 EGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp TTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred CCCCHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 998089998718--------989999999999999999999988---835562788997887999889902757536678
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98510355202577775456778779997786034899999999099999899946899999841233111232220110
Q 002462 693 DAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVTGKMGISASSDAQVKEILEQTLPYISIYDKELVTKI 772 (919)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllTG~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i 772 (919)
... ......+++.|++|+......|+.++||||+||++|||+||+.||...+..+....+....+
T Consensus 223 ~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~------------- 287 (346)
T 4fih_A 223 EVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP------------- 287 (346)
T ss_dssp SSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSC-------------
T ss_pred CCC--CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-------------
T ss_conf 877--53465627582799997799999689999999999999978799898599999999971799-------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 26888889006999999999998715999999999899999
Q 002462 773 VDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILK 813 (919)
Q Consensus 773 ~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~ 813 (919)
+.+.......++ +..++..||+.||++||++.|+++
T Consensus 288 --~~~~~~~~~s~~---~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 288 --PRLKNLHKVSPS---LKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp --CCCSCGGGSCHH---HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --CCCCCCCCCCHH---HHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf --988750229999---999999986799568909999960
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=363.43 Aligned_cols=248 Identities=19% Similarity=0.298 Sum_probs=198.9
Q ss_pred CCCCCCCCCCCCCCCCEEEEEE-CCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 9998323334588884899995-49961899995155310-899999999986169998413655886048817999972
Q 002462 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (919)
Q Consensus 534 ~~f~~~~~ig~G~~G~Vy~g~l-~~g~~vavK~l~~~~~~-~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~LV~Ey 611 (919)
..|.....||+|+||.||+|.. .+|..||||+++..... .+.+.+|+.+|++++|||||++++++.+ ++..||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-~~~~~iVmEy 229 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-GDELWVVMEF 229 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCEEEEEEEC
T ss_conf 843861696248184899999999998999999862554689999999999985799898716899998-9999999969
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCCCEEECCCCHHHHCC
Q ss_conf 27998100100069997756777999999999999998554512899992644688996001799962248850024038
Q 002462 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (919)
Q Consensus 612 ~~~GsL~~~L~~~~~~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~~~ki~dfg~~~~~~ 691 (919)
|++|+|.+++... .+++.+...|+.+++.||+|||+. +||||||||.||||+.++.+||+|||+++...
T Consensus 230 ~~gG~L~~~i~~~--------~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~ 298 (423)
T 4fie_A 230 LEGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 298 (423)
T ss_dssp CTTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECC
T ss_pred CCCCCHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECC
T ss_conf 8998289887616--------989999999999999999999988---90446578777898589998980372654777
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99851035520257777545677877999778603489999999909999989994689999984123311123222011
Q 002462 692 GDAHQSRITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVTGKMGISASSDAQVKEILEQTLPYISIYDKELVTK 771 (919)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllTG~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 771 (919)
.... ......+++.|++|+......|+.++||||+||++|||+||+.||.+.+..+....+....+
T Consensus 299 ~~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~------------ 364 (423)
T 4fie_A 299 KEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLP------------ 364 (423)
T ss_dssp SSCC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC------------
T ss_pred CCCC--CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC------------
T ss_conf 8876--43466647472799997799999689999999999999978799898699999999972799------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 026888889006999999999998715999999999899999
Q 002462 772 IVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILK 813 (919)
Q Consensus 772 i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~ 813 (919)
+.+.......++ +..++..||+.||++||++.|+++
T Consensus 365 ---~~~~~~~~~s~~---~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 365 ---PRLKNLHKVSPS---LKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp ---CCCSCTTSSCHH---HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---CCCCCCCCCCHH---HHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf ---887650129999---999999986789568909999960
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=362.17 Aligned_cols=255 Identities=18% Similarity=0.182 Sum_probs=198.4
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEE-CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 39998323334588884899995-49961899995155310899999999986169998413655886048817999972
Q 002462 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (919)
Q Consensus 533 t~~f~~~~~ig~G~~G~Vy~g~l-~~g~~vavK~l~~~~~~~~~f~~Ei~~l~~l~H~NiV~l~g~c~~~~~~~~LV~Ey 611 (919)
.+.|.....||+|+||.||+|+. .+|..||||+++.... +.+|+.++++++|||||++++++.+ ++..||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~-~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVRE-GPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEE-TTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH----HHHHHHHHHHCCCCCCCCEEEEEEE-CCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886----9999999985799899939999998-9999999966
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCC-CEEECCCCHHHHC
Q ss_conf 279981001000699977567779999999999999985545128999926446889960017999-6224885002403
Q 002462 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCAQ 690 (919)
Q Consensus 612 ~~~GsL~~~L~~~~~~~~~~~~l~w~~rl~Ia~~iA~gL~yLH~~~~~~IiHrDlK~~NILld~~~-~~ki~dfg~~~~~ 690 (919)
|++|+|.++|.+.. .+++.+...|+.|++.||+|||+. +||||||||+|||++.++ .+||+|||.++..
T Consensus 132 ~~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~ 201 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-------CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCL 201 (336)
T ss_dssp CTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC
T ss_pred CCCCCHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEEC
T ss_conf 59986999998769-------999999999999999999999988---90426167788799589997999627877685
Q ss_pred CCCCCCE---EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8998510---3552025777754567787799977860348999999990999998999468999998412331112322
Q 002462 691 GGDAHQS---RITRLLRLPQSSEQGSSGSLTATCPYDVYCFGKVLLELVTGKMGISASSDAQVKEILEQTLPYISIYDKE 767 (919)
Q Consensus 691 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~t~~sDVySfGvvLlEllTG~~p~~~~~~~~~~~~~~~~~p~~~~~~~~ 767 (919)
..+.... ......+++.|++|+......|+.++|||||||++|||+||+.||...+..+....+....+..
T Consensus 202 ~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~------ 275 (336)
T 4g3f_A 202 QPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPI------ 275 (336)
T ss_dssp ------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGG------
T ss_pred CCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC------
T ss_conf 67876540221785455802008999889998908999999999999997869989989999999998089980------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 20110268888890069999999999987159999999998999999202323
Q 002462 768 LVTKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKPTRRPLMRYILKALENPLK 820 (919)
Q Consensus 768 ~~~~i~d~~l~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPsm~~v~~~L~~~~~ 820 (919)
.++ .+....+ +..++.+||+.+|.+|||+.|+++.|...+.
T Consensus 276 --~~~-------~~~~s~~---~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 276 --REI-------PPSCAPL---TAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp --GGS-------CTTSCHH---HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --HHC-------CCCCCHH---HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf --025-------8667999---9999999762897689599999999999975
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=361.94 Aligned_cols=348 Identities=28% Similarity=0.379 Sum_probs=248.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCC---CCCCC-----------
Q ss_conf 79999999999999937999--999999999999977714059999999908986567888---89846-----------
Q 002462 45 LSSRTELAALFELRSSLGLR--RRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGS---QNPRF----------- 108 (919)
Q Consensus 45 ~~~~~e~~aL~~~~~~l~~~--~~~W~~~~~~C~~W~gv~C~~~~v~~l~l~~~~~~~~~~---~~~~~----------- 108 (919)
.+.++|++||++||+++.++ +++|..+.||| .|.||+|+.|+|+++++++.... |. +++.+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C-~w~gv~C~~~~v~~L~L~~~~l~--g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPC-TFDGVTCRDDKVTSIDLSSKPLN--VGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG-GSTTEEEETTEEEEEECTTSCCC--EEHHHHHHHTTTCTTCCEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCEEECCCCEEEEECCCCCCC--CCCCCCCHHHHCCCCCCCCCC
T ss_conf 687899999999996678962146878999876-88413878992789877899867--755766965731680224678
Q ss_pred -------CHHHHCCCCCCCEEECCCCCCCCCCCH--HHHHCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCEEEEECCCC
Q ss_conf -------711111899789786699879988853--665189987699801587985588677-8999898999107989
Q 002462 109 -------AADALVNLTHLASFNASRFLLPGSIPD--WLGQQLPTLQALDLRSCSISGVIPFSL-GNLTNLTSLYLSDNGL 178 (919)
Q Consensus 109 -------~~~~l~~l~~L~~l~ls~n~l~g~ip~--~~~~~L~~L~~LdLs~n~l~g~~p~~~-~~l~~L~~L~L~~N~l 178 (919)
.+..+.++++|+.|++++|.+.|.+|. .++. +++|++|||++|.+.+.+|..+ .++++|++|+|++|.+
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHC-CCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 6888678703324578899898989857870789678727-889998989688267747977856388999898979835
Q ss_pred CCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 9989611---2499998899855896998898222289999988656874787799546799989888702898899985
Q 002462 179 TGTIPSS---LGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255 (919)
Q Consensus 179 ~~~~p~~---l~~L~~L~~L~Ls~N~l~~~~P~~~~~l~~L~~L~Ls~N~l~~~lp~~l~~l~~L~~L~L~~N~l~~~~p 255 (919)
++..|.. +.++++|+.|++++|.+.+..|. ..+++|+.|++++|.+.+.+|. ++++++|++|++++|.+.+.+|
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCC
T ss_conf 885871556643589889898978803465784--5478689898928827887711-1269999989794885878165
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 22499999988986799798779544422645878971587689998976469998877898467899899840028999
Q 002462 256 AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP 335 (919)
Q Consensus 256 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 335 (919)
..+.++++|+.|++++|.+.+.+|.. .+++|+.|++++|.+.+.+|..++..+++|+.|++++|.+++.+|..+..++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 77744888898989888665716724--3687898979178557725888884468688998968967784236775587
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC---C-CCCEEECCCCCCCCCCCCCC
Q ss_conf 997898668979899995554578887489866883755788789---9-98599831776777578311
Q 002462 336 QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL---G-RFRLVDLSGNYFEGRVPEYV 401 (919)
Q Consensus 336 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~l~ls~N~~~g~~~~~l---~-~l~~l~ls~N~l~g~ip~~~ 401 (919)
+|+.|++++|++.|.+|...+.....++.|++++|.+.+.+|..+ . +|+.+++++|.+.|.+|..+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHH
T ss_conf 7667789788525737978872488887884847843762309898632277199862787478767666
Done!