Query 002464
Match_columns 919
No_of_seqs 288 out of 1561
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 15:46:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002464.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1187-1191//hhsearch_pdb/002464hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 140.7 6.6 95 737-838 3-103 (111)
2 4gne_A Histone-lysine N-methyl 1.0 1 1 137.7 6.3 90 735-834 9-100 (107)
3 2kwj_A Zinc finger protein DPF 1.0 1 1 136.2 3.7 92 742-840 2-109 (114)
4 3v43_A Histone acetyltransfera 1.0 1 1 128.7 4.4 91 740-835 4-109 (112)
5 3ask_A E3 ubiquitin-protein li 1.0 1 1 107.7 5.5 113 692-836 110-223 (226)
6 2lbm_A Transcriptional regulat 1.0 1 1 106.3 0.4 100 663-786 9-117 (142)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 102.3 3.9 49 736-784 2-52 (207)
8 3o36_A Transcription intermedi 1.0 1 1 100.2 4.1 47 739-785 2-50 (184)
9 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 94.5 4.9 51 735-785 19-71 (88)
10 2ro1_A Transcription intermedi 1.0 1 1 93.2 3.9 47 740-786 1-49 (189)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=140.71 Aligned_cols=95 Identities=28% Similarity=0.813 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCCCCCCE---EECCCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76655422211668943---5247899955556555778--999974334432-21127866885546988810267654
Q 002464 737 DDKNDDSCGICGDGGEL---ICCDNCPSAFHQACLSIQD--LPTGSWFCSNCT-CWICGDLVNDKEASSSFDALKCSQCE 810 (919)
Q Consensus 737 ~d~ndd~C~VCgdGGeL---IcCD~CpkaFHl~CL~l~~--vPeG~W~Cp~C~-C~ICge~~~dke~~s~~~iL~CdQCe 810 (919)
...|+++|.+|+++|++ |+|++|+++||+.|+.+.. ++.+.|+|+.|. |.+|++... ...++.|++|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~------~~~ll~Cd~C~ 76 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE------DSKMLVCDTCD 76 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC------CTTEEECSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCEEECCCCC
T ss_conf 889979995789988875885999999773967708865544566865876782623476589------87765899998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 1276100047658998896311664266
Q 002464 811 HKYHGECLKDMSKGAVSEAWFCNQSCQE 838 (919)
Q Consensus 811 k~YHv~CL~~~~~~~~~g~WFCs~~Cq~ 838 (919)
++||..|+++.....+.+.|||+ .|..
T Consensus 77 ~~yH~~Cl~ppl~~~P~g~W~C~-~C~~ 103 (111)
T 2ysm_A 77 KGYHTFCLQPVMKSVPTNGWKCK-NCRI 103 (111)
T ss_dssp CEEEGGGSSSCCSSCCSSCCCCH-HHHC
T ss_pred CHHHHHHCCCCCCCCCCCCCCCC-CCCC
T ss_conf 08869865876566889882992-8827
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=137.72 Aligned_cols=90 Identities=32% Similarity=0.751 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88766554222116689435247--8999555565557789999743344322112786688554698881026765412
Q 002464 735 DEDDKNDDSCGICGDGGELICCD--NCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHK 812 (919)
Q Consensus 735 ~~~d~ndd~C~VCgdGGeLIcCD--~CpkaFHl~CL~l~~vPeG~W~Cp~C~C~ICge~~~dke~~s~~~iL~CdQCek~ 812 (919)
.....++++|.+|++||+||+|| +||++||+.||++..+|+|+|+||.|.|.+|++.. .+.|..|+++
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~----------~~~C~~Cp~s 78 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAA----------VSFCEFCPHS 78 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBC----------CEECSSSSCE
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC----------CCCCCCCCCC
T ss_conf 886889799984799784757799999926522518687579988889899988177989----------8674778710
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7610004765899889631166
Q 002464 813 YHGECLKDMSKGAVSEAWFCNQ 834 (919)
Q Consensus 813 YHv~CL~~~~~~~~~g~WFCs~ 834 (919)
||..|+.+.+.....+.|+|+.
T Consensus 79 fC~~c~~g~l~~~~~~~~~c~~ 100 (107)
T 4gne_A 79 FCKDHEKGALVPSALEGRLCCS 100 (107)
T ss_dssp ECTTTCTTSCEECTTTTCEECT
T ss_pred HHHHCCCCCCEECCCCCCEECC
T ss_conf 1121158731102788966667
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=136.18 Aligned_cols=92 Identities=29% Similarity=0.753 Sum_probs=76.5
Q ss_pred CCCCCCCC----------CCCEEECCCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42221166----------8943524789995555655577-----899997433443-2211278668855469888102
Q 002464 742 DSCGICGD----------GGELICCDNCPSAFHQACLSIQ-----DLPTGSWFCSNC-TCWICGDLVNDKEASSSFDALK 805 (919)
Q Consensus 742 d~C~VCgd----------GGeLIcCD~CpkaFHl~CL~l~-----~vPeG~W~Cp~C-~C~ICge~~~dke~~s~~~iL~ 805 (919)
+.|.+|.. +|+||+|++|+++||+.||.+. .++.+.|+|+.| .|.+|++.. +...++.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~------~~~~ll~ 75 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSE------NDDQLLF 75 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCT------TTTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCCCEEE
T ss_conf 8086588975344467999998692989983232138784664311687751756627337563468------8874577
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 67654127610004765899889631166426686
Q 002464 806 CSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVY 840 (919)
Q Consensus 806 CdQCek~YHv~CL~~~~~~~~~g~WFCs~~Cq~I~ 840 (919)
|++|+++||..|+.+.....+.+.|||+ .|...+
T Consensus 76 Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~-~C~~~~ 109 (114)
T 2kwj_A 76 CDDCDRGYHMYCLNPPVAEPPEGSWSCH-LCWELL 109 (114)
T ss_dssp CSSSCCEEETTTSSSCCSSCCSSCCCCH-HHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECC-CCCCHH
T ss_conf 4898941025045987467889781992-410344
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=128.70 Aligned_cols=91 Identities=27% Similarity=0.653 Sum_probs=75.5
Q ss_pred CCCCCCCCC---------CCCCEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 554222116---------6894352478999555565557-----7899997433443-221127866885546988810
Q 002464 740 NDDSCGICG---------DGGELICCDNCPSAFHQACLSI-----QDLPTGSWFCSNC-TCWICGDLVNDKEASSSFDAL 804 (919)
Q Consensus 740 ndd~C~VCg---------dGGeLIcCD~CpkaFHl~CL~l-----~~vPeG~W~Cp~C-~C~ICge~~~dke~~s~~~iL 804 (919)
...+|.+|. ++++||.|++|+++||.+||++ ..++.+.|+|+.| .|.+|++... +...++
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~-----~~~~ll 78 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGK-----NADNML 78 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCC-----TTCCCE
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCCEE
T ss_conf 676131038933427689911163753449988970353888999875424653011775446668688-----856568
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2676541276100047658998896311664
Q 002464 805 KCSQCEHKYHGECLKDMSKGAVSEAWFCNQS 835 (919)
Q Consensus 805 ~CdQCek~YHv~CL~~~~~~~~~g~WFCs~~ 835 (919)
.|++|+++||..|+.+.....+.+.|||+.+
T Consensus 79 ~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C 109 (112)
T 3v43_A 79 FCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109 (112)
T ss_dssp ECTTTCCEECGGGCSSCCSSCCSSCCCCTTT
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCCEECCCC
T ss_conf 7489989156635899989899988579787
No 5
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=107.69 Aligned_cols=113 Identities=21% Similarity=0.513 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 99855664333589854201110031123202434547987678876655422211668943524789995555655577
Q 002464 692 KPNRPCLNLVMESGKPFTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSIQ 771 (919)
Q Consensus 692 ~~rRP~~nI~LedGkSL~~CqleAws~e~k~rK~g~R~k~v~~~~~d~ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l~ 771 (919)
+.+.|+++|+|+ |++|..|++......++.++.+.............++..|..|
T Consensus 110 ~~~~~~a~i~l~-g~sl~~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c------------------------ 164 (226)
T 3ask_A 110 TARELYANVVLG-DDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHC------------------------ 164 (226)
T ss_dssp SCEEEEEEEECS-SSEEEEEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTT------------------------
T ss_pred CCCCEEEEEEEC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------
T ss_conf 312224688766-8754341578731433211335553333463334578644323------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 899997433443221127866885546988810267654127610004765899889-63116642
Q 002464 772 DLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSE-AWFCNQSC 836 (919)
Q Consensus 772 ~vPeG~W~Cp~C~C~ICge~~~dke~~s~~~iL~CdQCek~YHv~CL~~~~~~~~~g-~WFCs~~C 836 (919)
.+.+.|.|..|.|.+|+... ++..++.|+.|+++||..|+.|++...+.+ .|||+.|.
T Consensus 165 -~~~~~w~C~~c~C~vC~~~~------~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 165 -KDDVNRLCRVCACHLCGGRQ------DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp -TTCTTSCCTTTSCSSSCCCC------C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred -CCCCCEECCCCCCCCCCCCC------CCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -57867766888886889979------998768838999410075678874569899887893874
No 6
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=106.27 Aligned_cols=100 Identities=29% Similarity=0.632 Sum_probs=65.6
Q ss_pred CCEEECCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42341498484026962140245451178998556643335898542011100311232024345479876788766554
Q 002464 663 DGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDD 742 (919)
Q Consensus 663 ~G~it~~GI~CsCC~kviSpSeFE~HAG~~~rRP~~nI~LedGkSL~~CqleAws~e~k~rK~g~R~k~v~~~~~d~ndd 742 (919)
+|+. ++|.|.+|++.++++++... ...|...+.+ -..|.. .+.. ..+ ..+++.+++
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~~~~----~~HPll~v~~-----C~~C~~-----~y~~--~~~------~~d~Dg~~d 64 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQKDSI----YRHPSLQVLI-----CKNCFK-----YYMS--DDI------SRDSDGMDE 64 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCSSSE----EEETTTTEEE-----EHHHHH-----HHHH--SCC------CBCTTSCBC
T ss_pred CCCC--CCCEECCCCCCCCCCCCCCH----HCCCCCCCCC-----CHHHHH-----HHHC--CCC------EECCCCCCC
T ss_conf 6775--79885489986565456632----1298756642-----477898-----8723--781------316888878
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCC-------C--CCCCCCCCCCCCCC
Q ss_conf 22211668943524789995555655577-------8--99997433443221
Q 002464 743 SCGICGDGGELICCDNCPSAFHQACLSIQ-------D--LPTGSWFCSNCTCW 786 (919)
Q Consensus 743 ~C~VCgdGGeLIcCD~CpkaFHl~CL~l~-------~--vPeG~W~Cp~C~C~ 786 (919)
+|.+|++||+|+|||.||++||..|+.+. . .|.++|+|+.|.+.
T Consensus 65 ~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 65 QCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred EECCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCCC
T ss_conf 00003999847868998973127454888873666542468999882126685
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=102.32 Aligned_cols=49 Identities=43% Similarity=1.272 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 87665542221166894352478999555565557--78999974334432
Q 002464 736 EDDKNDDSCGICGDGGELICCDNCPSAFHQACLSI--QDLPTGSWFCSNCT 784 (919)
Q Consensus 736 ~~d~ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l--~~vPeG~W~Cp~C~ 784 (919)
+++.++++|.+|++||+|++||+|+++||..|+.| ..+|.|.|+|+.|.
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 52 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCR 52 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEE
T ss_conf 878888989888999936776999984387158999888899887868426
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=100.19 Aligned_cols=47 Identities=43% Similarity=1.249 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 65542221166894352478999555565557--789999743344322
Q 002464 739 KNDDSCGICGDGGELICCDNCPSAFHQACLSI--QDLPTGSWFCSNCTC 785 (919)
Q Consensus 739 ~ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l--~~vPeG~W~Cp~C~C 785 (919)
+|+++|.+|++||+|++||+|+++||..|+.| ..+|.|.|+|+.|..
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9999541179999056629999530811368987879998878925568
No 9
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=94.45 Aligned_cols=51 Identities=33% Similarity=0.823 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 887665542221166894352478999555565557--789999743344322
Q 002464 735 DEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSI--QDLPTGSWFCSNCTC 785 (919)
Q Consensus 735 ~~~d~ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l--~~vPeG~W~Cp~C~C 785 (919)
...+.+++.|.+|+++|+||+||+|+++||+.|+.| ..+|+|+|+|+.|..
T Consensus 19 ~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 19 GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33388998183769999778899999724163289897878699767726448
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.19 Aligned_cols=47 Identities=34% Similarity=0.880 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf 5542221166894352478999555565557--7899997433443221
Q 002464 740 NDDSCGICGDGGELICCDNCPSAFHQACLSI--QDLPTGSWFCSNCTCW 786 (919)
Q Consensus 740 ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l--~~vPeG~W~Cp~C~C~ 786 (919)
.++.|.+|++||+|++||+|+++||+.|+.| ..+|.|.|+|+.|...
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9882764799994568999983331022898756689987889270477
Done!