Query 002465
Match_columns 919
No_of_seqs 360 out of 3133
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 00:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 3E-115 7E-120 954.8 89.4 876 19-918 1-880 (1075)
2 KOG2023 Nuclear transport rece 100.0 4.1E-67 8.9E-72 536.2 51.0 759 22-917 13-823 (885)
3 KOG1241 Karyopherin (importin) 100.0 2.1E-60 4.6E-65 496.1 64.3 784 23-901 2-845 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 1.4E-47 3.1E-52 386.0 66.7 778 19-919 1-817 (858)
5 KOG1991 Nuclear transport rece 100.0 2.9E-34 6.3E-39 310.6 68.6 687 19-736 1-794 (1010)
6 KOG2171 Karyopherin (importin) 100.0 6.3E-32 1.4E-36 298.8 68.5 793 28-914 85-1004(1075)
7 KOG2023 Nuclear transport rece 100.0 2.2E-31 4.8E-36 274.4 47.0 703 56-916 10-780 (885)
8 KOG1241 Karyopherin (importin) 100.0 5.1E-27 1.1E-31 246.9 60.1 664 11-745 23-814 (859)
9 KOG1992 Nuclear export recepto 100.0 6.8E-27 1.5E-31 247.6 56.6 692 19-783 2-779 (960)
10 KOG2274 Predicted importin 9 [ 100.0 3.1E-24 6.7E-29 230.2 59.8 702 19-796 1-779 (1005)
11 KOG1993 Nuclear transport rece 100.0 1.5E-23 3.3E-28 221.3 58.5 700 24-796 2-811 (978)
12 KOG1824 TATA-binding protein-i 100.0 6.4E-22 1.4E-26 212.5 59.6 702 26-891 9-744 (1233)
13 KOG1824 TATA-binding protein-i 99.9 1.7E-20 3.6E-25 201.8 62.8 644 23-744 48-763 (1233)
14 COG5215 KAP95 Karyopherin (imp 99.9 1.8E-20 3.8E-25 190.9 57.1 650 27-744 99-811 (858)
15 KOG0213 Splicing factor 3b, su 99.9 6.5E-19 1.4E-23 184.6 59.0 692 23-801 364-1111(1172)
16 COG5656 SXM1 Importin, protein 99.9 5.6E-18 1.2E-22 178.3 63.9 511 21-551 2-587 (970)
17 KOG0213 Splicing factor 3b, su 99.9 7.3E-19 1.6E-23 184.2 42.7 590 184-916 364-959 (1172)
18 KOG2021 Nuclear mRNA export fa 99.9 1.3E-16 2.7E-21 168.4 54.3 636 22-718 3-782 (980)
19 COG5101 CRM1 Importin beta-rel 99.9 6.1E-15 1.3E-19 152.6 61.0 496 19-535 11-651 (1053)
20 KOG2022 Nuclear transport rece 99.9 1.9E-14 4.1E-19 155.5 66.9 604 20-643 5-755 (982)
21 COG5181 HSH155 U2 snRNP splice 99.9 1E-15 2.2E-20 157.9 53.8 687 22-801 168-916 (975)
22 PLN03200 cellulose synthase-in 99.8 1.5E-15 3.3E-20 183.7 62.0 759 21-911 12-860 (2102)
23 KOG0915 Uncharacterized conser 99.8 1.2E-16 2.6E-21 181.2 44.5 601 230-916 817-1474(1702)
24 PLN03200 cellulose synthase-in 99.8 1.2E-14 2.6E-19 176.1 54.1 679 23-798 59-812 (2102)
25 COG5657 CSE1 CAS/CSE protein i 99.8 2.8E-14 6E-19 155.2 48.6 542 23-577 5-609 (947)
26 COG5181 HSH155 U2 snRNP splice 99.8 1.2E-15 2.5E-20 157.4 32.7 591 184-916 169-764 (975)
27 KOG0915 Uncharacterized conser 99.8 3.2E-13 6.9E-18 154.0 52.0 491 141-744 954-1471(1702)
28 KOG1242 Protein containing ada 99.7 1.2E-14 2.7E-19 153.0 36.5 490 100-645 52-546 (569)
29 KOG1242 Protein containing ada 99.7 6E-14 1.3E-18 147.9 41.4 522 115-736 28-558 (569)
30 KOG0212 Uncharacterized conser 99.7 5.2E-14 1.1E-18 144.6 27.8 357 381-798 47-407 (675)
31 KOG1991 Nuclear transport rece 99.7 1.3E-09 2.8E-14 120.8 61.8 488 61-596 6-591 (1010)
32 KOG1248 Uncharacterized conser 99.6 8.6E-09 1.9E-13 116.7 65.0 744 58-919 95-906 (1176)
33 KOG2081 Nuclear transport regu 99.6 7.7E-12 1.7E-16 130.1 35.9 464 40-535 2-539 (559)
34 KOG0212 Uncharacterized conser 99.6 4E-12 8.6E-17 131.0 32.4 412 189-644 5-425 (675)
35 PTZ00429 beta-adaptin; Provisi 99.6 5.1E-10 1.1E-14 127.2 52.0 476 17-575 62-544 (746)
36 PF01602 Adaptin_N: Adaptin N 99.6 1.4E-11 3E-16 141.6 40.1 482 17-576 36-523 (526)
37 PF01602 Adaptin_N: Adaptin N 99.6 1.8E-11 3.9E-16 140.5 41.0 490 23-598 8-501 (526)
38 KOG0211 Protein phosphatase 2A 99.6 4.3E-11 9.2E-16 134.0 38.9 567 117-798 95-665 (759)
39 PTZ00429 beta-adaptin; Provisi 99.5 3.2E-09 6.9E-14 120.9 53.0 492 118-790 47-539 (746)
40 KOG0166 Karyopherin (importin) 99.5 5.5E-12 1.2E-16 132.7 27.7 360 145-578 68-437 (514)
41 KOG0166 Karyopherin (importin) 99.5 8E-11 1.7E-15 124.1 31.4 353 68-493 77-439 (514)
42 KOG2274 Predicted importin 9 [ 99.4 1.2E-07 2.6E-12 104.1 53.6 679 68-910 15-779 (1005)
43 KOG0211 Protein phosphatase 2A 99.4 1.4E-09 3E-14 122.1 37.5 495 68-623 170-665 (759)
44 KOG1992 Nuclear export recepto 99.4 3.6E-07 7.7E-12 99.5 51.8 567 68-717 16-685 (960)
45 PF10508 Proteasom_PSMB: Prote 99.3 6.7E-09 1.5E-13 115.6 36.7 394 108-532 43-462 (503)
46 COG5064 SRP1 Karyopherin (impo 99.3 5.6E-11 1.2E-15 114.8 13.6 361 145-535 73-446 (526)
47 KOG1248 Uncharacterized conser 99.3 1.1E-05 2.5E-10 92.2 64.4 687 33-801 106-902 (1176)
48 PRK09687 putative lyase; Provi 99.2 1.8E-09 3.8E-14 109.7 23.7 252 188-573 27-278 (280)
49 KOG1240 Protein kinase contain 99.2 3.7E-09 8.1E-14 118.8 27.3 302 144-493 423-728 (1431)
50 KOG1943 Beta-tubulin folding c 99.2 2.3E-06 4.9E-11 96.5 48.6 477 98-625 336-840 (1133)
51 KOG1060 Vesicle coat complex A 99.2 1.4E-07 3.1E-12 101.9 37.0 384 107-537 39-463 (968)
52 PF12755 Vac14_Fab1_bd: Vacuol 99.2 2E-10 4.2E-15 94.4 11.4 94 393-489 2-95 (97)
53 PF08506 Cse1: Cse1; InterPro 99.2 4.9E-09 1.1E-13 110.1 23.3 253 222-485 73-370 (370)
54 PRK13800 putative oxidoreducta 99.2 7E-09 1.5E-13 124.4 26.9 275 144-529 622-896 (897)
55 KOG2020 Nuclear transport rece 99.2 4.6E-05 1E-09 89.1 56.1 214 34-263 24-261 (1041)
56 PF10508 Proteasom_PSMB: Prote 99.1 3.3E-07 7.2E-12 102.2 37.6 450 23-517 4-489 (503)
57 PF12460 MMS19_C: RNAPII trans 99.1 2.3E-07 5.1E-12 101.3 35.1 382 146-552 2-414 (415)
58 KOG1062 Vesicle coat complex A 99.1 4.9E-06 1.1E-10 90.9 43.5 432 105-627 105-549 (866)
59 KOG1060 Vesicle coat complex A 99.1 2.2E-07 4.8E-12 100.5 33.0 449 23-553 72-550 (968)
60 PRK13800 putative oxidoreducta 99.1 8.9E-09 1.9E-13 123.5 25.5 272 107-487 625-896 (897)
61 KOG1943 Beta-tubulin folding c 99.1 9.4E-07 2E-11 99.4 38.7 497 68-623 352-882 (1133)
62 COG5064 SRP1 Karyopherin (impo 99.1 3.2E-08 6.9E-13 96.2 22.9 357 59-491 74-444 (526)
63 PRK09687 putative lyase; Provi 99.1 2.9E-08 6.2E-13 100.9 22.6 254 145-487 25-279 (280)
64 PF12348 CLASP_N: CLASP N term 99.0 2.9E-08 6.2E-13 99.6 19.5 188 381-580 11-209 (228)
65 KOG1059 Vesicle coat complex A 99.0 9.4E-05 2E-09 80.0 44.6 286 185-533 110-402 (877)
66 KOG4224 Armadillo repeat prote 98.8 1E-07 2.2E-12 93.6 15.1 381 119-579 62-448 (550)
67 KOG1062 Vesicle coat complex A 98.8 8.6E-05 1.9E-09 81.5 38.4 381 97-526 136-575 (866)
68 KOG1061 Vesicle coat complex A 98.8 1.3E-05 2.8E-10 87.9 32.1 474 23-575 50-526 (734)
69 KOG4224 Armadillo repeat prote 98.8 6.4E-07 1.4E-11 88.2 19.2 450 37-533 23-494 (550)
70 PF12460 MMS19_C: RNAPII trans 98.8 1.2E-05 2.5E-10 88.1 31.6 370 246-642 17-414 (415)
71 KOG1020 Sister chromatid cohes 98.8 0.00094 2E-08 78.7 46.9 422 180-641 812-1274(1692)
72 KOG1059 Vesicle coat complex A 98.8 5.5E-05 1.2E-09 81.7 34.5 240 142-471 143-382 (877)
73 KOG1240 Protein kinase contain 98.8 1.2E-06 2.5E-11 99.4 22.6 298 186-536 424-729 (1431)
74 COG5240 SEC21 Vesicle coat com 98.7 8.4E-05 1.8E-09 78.0 33.6 445 118-619 39-552 (898)
75 COG5240 SEC21 Vesicle coat com 98.7 5.6E-05 1.2E-09 79.3 31.2 257 181-489 261-554 (898)
76 PF12348 CLASP_N: CLASP N term 98.7 6E-07 1.3E-11 90.1 16.6 187 352-545 21-219 (228)
77 KOG1820 Microtubule-associated 98.7 1.9E-06 4.2E-11 98.1 21.6 211 370-593 246-459 (815)
78 KOG2032 Uncharacterized conser 98.7 1.3E-05 2.8E-10 83.0 24.7 176 376-552 216-392 (533)
79 KOG4535 HEAT and armadillo rep 98.6 7.1E-05 1.5E-09 76.9 27.6 452 118-599 10-582 (728)
80 PF03378 CAS_CSE1: CAS/CSE pro 98.6 0.0001 2.2E-09 79.7 30.4 234 455-738 21-268 (435)
81 cd00020 ARM Armadillo/beta-cat 98.5 6.4E-07 1.4E-11 79.7 10.4 112 378-490 8-120 (120)
82 PF12755 Vac14_Fab1_bd: Vacuol 98.5 3.9E-07 8.4E-12 75.0 8.1 87 434-523 2-88 (97)
83 KOG1993 Nuclear transport rece 98.5 0.0036 7.8E-08 69.1 58.3 344 393-798 413-770 (978)
84 PF03810 IBN_N: Importin-beta 98.5 5E-07 1.1E-11 72.5 7.9 67 42-113 1-76 (77)
85 KOG2259 Uncharacterized conser 98.5 0.0011 2.3E-08 71.4 34.2 295 183-536 197-515 (823)
86 PF13513 HEAT_EZ: HEAT-like re 98.4 4.8E-07 1E-11 66.7 5.7 55 391-445 1-55 (55)
87 KOG1077 Vesicle coat complex A 98.4 0.0024 5.2E-08 69.3 34.8 353 150-550 81-451 (938)
88 COG5656 SXM1 Importin, protein 98.4 0.0064 1.4E-07 66.7 56.3 186 396-596 389-586 (970)
89 KOG1967 DNA repair/transcripti 98.3 0.0045 9.8E-08 69.6 36.0 206 391-600 788-1005(1030)
90 KOG2022 Nuclear transport rece 98.3 0.0043 9.2E-08 69.4 35.6 158 432-597 481-639 (982)
91 KOG0168 Putative ubiquitin fus 98.3 0.00054 1.2E-08 75.8 28.4 177 416-599 209-389 (1051)
92 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.00021 4.6E-09 77.3 23.9 254 493-801 16-276 (435)
93 KOG1058 Vesicle coat complex C 98.3 0.00036 7.9E-09 76.0 24.9 223 184-450 243-466 (948)
94 KOG2956 CLIP-associating prote 98.3 0.00013 2.8E-09 75.3 20.6 208 376-597 286-497 (516)
95 KOG0168 Putative ubiquitin fus 98.2 0.0015 3.2E-08 72.5 29.1 374 145-553 169-652 (1051)
96 KOG1058 Vesicle coat complex C 98.2 0.0023 4.9E-08 70.1 29.2 349 137-556 50-408 (948)
97 KOG4524 Uncharacterized conser 98.2 0.024 5.2E-07 64.5 52.1 390 438-915 568-977 (1014)
98 PF04510 DUF577: Family of unk 98.2 0.00012 2.5E-09 65.5 15.7 154 103-260 3-164 (174)
99 KOG1020 Sister chromatid cohes 98.2 0.037 8.1E-07 66.0 56.9 422 106-557 819-1277(1692)
100 cd00020 ARM Armadillo/beta-cat 98.2 5.4E-06 1.2E-10 73.6 7.7 111 419-531 8-119 (120)
101 KOG4535 HEAT and armadillo rep 98.2 0.0019 4.2E-08 66.8 26.2 188 387-578 401-604 (728)
102 PF05804 KAP: Kinesin-associat 98.2 0.026 5.5E-07 64.6 38.1 373 147-576 254-648 (708)
103 KOG1077 Vesicle coat complex A 98.2 0.02 4.4E-07 62.5 41.7 337 106-489 114-487 (938)
104 KOG4413 26S proteasome regulat 98.1 0.004 8.7E-08 61.3 26.6 293 124-450 63-380 (524)
105 PF13513 HEAT_EZ: HEAT-like re 98.1 5.4E-06 1.2E-10 61.1 5.6 55 432-488 1-55 (55)
106 KOG1293 Proteins containing ar 98.1 0.014 2.9E-07 63.6 32.6 147 388-536 388-537 (678)
107 KOG2259 Uncharacterized conser 98.1 0.011 2.3E-07 64.1 31.3 295 233-580 200-514 (823)
108 KOG1078 Vesicle coat complex C 98.1 0.03 6.5E-07 62.2 38.0 362 139-579 60-423 (865)
109 KOG1061 Vesicle coat complex A 98.1 0.0027 5.9E-08 70.3 27.6 420 28-526 92-522 (734)
110 PF08389 Xpo1: Exportin 1-like 98.1 2.4E-05 5.3E-10 72.4 10.0 128 118-255 2-148 (148)
111 KOG0889 Histone acetyltransfer 98.1 0.12 2.6E-06 67.2 49.7 556 178-796 715-1345(3550)
112 KOG2032 Uncharacterized conser 98.0 0.0036 7.9E-08 65.5 25.6 279 126-447 236-531 (533)
113 KOG1967 DNA repair/transcripti 98.0 3.6E-05 7.9E-10 85.5 11.8 152 374-526 864-1018(1030)
114 PF05804 KAP: Kinesin-associat 98.0 0.0033 7.2E-08 71.6 27.4 375 116-533 262-650 (708)
115 KOG2021 Nuclear mRNA export fa 98.0 0.043 9.4E-07 60.5 49.1 158 393-553 415-585 (980)
116 KOG1078 Vesicle coat complex C 98.0 0.05 1.1E-06 60.5 36.9 289 181-532 242-532 (865)
117 PF12717 Cnd1: non-SMC mitotic 98.0 0.00028 6.1E-09 67.0 15.4 111 390-509 1-111 (178)
118 COG5096 Vesicle coat complex, 98.0 0.065 1.4E-06 61.0 36.9 137 23-173 56-196 (757)
119 KOG4653 Uncharacterized conser 97.9 0.0011 2.3E-08 73.8 20.5 234 462-744 729-966 (982)
120 PF13646 HEAT_2: HEAT repeats; 97.9 8.9E-05 1.9E-09 61.3 9.4 86 380-486 2-88 (88)
121 PF08167 RIX1: rRNA processing 97.9 0.00029 6.4E-09 65.5 13.8 138 414-553 21-164 (165)
122 KOG2956 CLIP-associating prote 97.9 0.00042 9E-09 71.7 15.6 169 376-553 328-499 (516)
123 KOG0891 DNA-dependent protein 97.8 0.17 3.8E-06 65.2 40.5 335 402-802 632-1046(2341)
124 KOG4413 26S proteasome regulat 97.8 0.039 8.5E-07 54.6 29.1 350 157-532 54-439 (524)
125 PF12717 Cnd1: non-SMC mitotic 97.8 0.00084 1.8E-08 63.8 16.0 135 156-303 1-139 (178)
126 COG5096 Vesicle coat complex, 97.8 0.11 2.3E-06 59.4 34.3 156 123-303 39-195 (757)
127 KOG2062 26S proteasome regulat 97.7 0.077 1.7E-06 58.6 29.6 155 379-555 521-676 (929)
128 PF04826 Arm_2: Armadillo-like 97.7 0.003 6.4E-08 63.0 17.9 191 380-581 15-209 (254)
129 PF10274 ParcG: Parkin co-regu 97.7 0.00073 1.6E-08 62.1 12.4 124 458-582 36-169 (183)
130 PLN03076 ARF guanine nucleotid 97.7 0.37 8E-06 61.3 44.4 197 68-267 1148-1383(1780)
131 PF08167 RIX1: rRNA processing 97.7 0.0011 2.4E-08 61.7 13.9 139 140-280 22-163 (165)
132 KOG2933 Uncharacterized conser 97.7 0.00087 1.9E-08 65.8 13.5 148 379-535 90-237 (334)
133 PF11864 DUF3384: Domain of un 97.7 0.1 2.2E-06 58.1 31.6 314 120-465 6-349 (464)
134 KOG1410 Nuclear transport rece 97.7 0.14 3.1E-06 55.8 49.1 147 21-174 4-159 (1082)
135 PF08506 Cse1: Cse1; InterPro 97.7 0.03 6.5E-07 59.5 25.9 131 391-527 225-370 (370)
136 KOG4653 Uncharacterized conser 97.7 0.0081 1.8E-07 67.1 21.8 217 288-530 741-962 (982)
137 PLN03076 ARF guanine nucleotid 97.6 0.092 2E-06 66.5 33.5 309 141-471 1135-1513(1780)
138 KOG1822 Uncharacterized conser 97.6 0.34 7.4E-06 59.7 40.5 223 286-536 888-1131(2067)
139 KOG4524 Uncharacterized conser 97.6 0.012 2.5E-07 67.0 23.1 297 161-471 566-900 (1014)
140 KOG0946 ER-Golgi vesicle-tethe 97.6 0.18 3.9E-06 56.3 41.4 120 142-262 121-243 (970)
141 PF13251 DUF4042: Domain of un 97.6 0.00066 1.4E-08 63.2 11.3 143 392-534 1-176 (182)
142 PF14500 MMS19_N: Dos2-interac 97.6 0.023 4.9E-07 57.2 23.0 244 189-467 4-257 (262)
143 cd00256 VATPase_H VATPase_H, r 97.6 0.074 1.6E-06 57.1 27.8 355 53-446 50-424 (429)
144 PF13646 HEAT_2: HEAT repeats; 97.5 0.00045 9.7E-09 57.0 8.3 86 420-528 1-88 (88)
145 KOG0414 Chromosome condensatio 97.5 0.38 8.2E-06 56.6 58.9 160 141-304 268-429 (1251)
146 PF05004 IFRD: Interferon-rela 97.5 0.027 5.8E-07 58.5 22.2 196 425-625 50-260 (309)
147 KOG0392 SNF2 family DNA-depend 97.4 0.45 9.8E-06 56.2 50.4 226 68-304 88-326 (1549)
148 PF05918 API5: Apoptosis inhib 97.4 0.035 7.6E-07 61.1 23.2 140 143-303 23-162 (556)
149 PF14500 MMS19_N: Dos2-interac 97.4 0.033 7.2E-07 56.0 21.5 230 353-597 14-257 (262)
150 KOG2759 Vacuolar H+-ATPase V1 97.4 0.21 4.5E-06 51.9 27.7 354 56-447 65-438 (442)
151 KOG1517 Guanine nucleotide bin 97.4 0.021 4.6E-07 65.2 21.5 148 390-538 570-738 (1387)
152 KOG1820 Microtubule-associated 97.4 0.0074 1.6E-07 69.6 18.7 161 378-546 296-458 (815)
153 PF05918 API5: Apoptosis inhib 97.4 0.083 1.8E-06 58.3 25.5 145 420-585 25-170 (556)
154 PF05004 IFRD: Interferon-rela 97.4 0.031 6.7E-07 58.0 21.4 207 386-599 52-282 (309)
155 PF02985 HEAT: HEAT repeat; I 97.4 0.00024 5.2E-09 44.6 3.6 30 419-448 1-30 (31)
156 KOG2160 Armadillo/beta-catenin 97.3 0.014 3E-07 59.4 17.4 148 387-537 93-245 (342)
157 PF04826 Arm_2: Armadillo-like 97.3 0.009 2E-07 59.6 15.4 187 106-304 15-206 (254)
158 KOG1822 Uncharacterized conser 97.3 0.92 2E-05 56.2 49.7 314 458-820 874-1208(2067)
159 COG1413 FOG: HEAT repeat [Ener 97.3 0.091 2E-06 56.2 24.2 261 184-531 43-303 (335)
160 KOG0891 DNA-dependent protein 97.2 1.4 3E-05 57.5 40.0 258 37-304 459-720 (2341)
161 PF05536 Neurochondrin: Neuroc 97.2 0.55 1.2E-05 53.0 30.4 186 391-582 71-266 (543)
162 COG1413 FOG: HEAT repeat [Ener 97.2 0.14 3.1E-06 54.7 25.1 111 354-492 196-306 (335)
163 PF13251 DUF4042: Domain of un 97.2 0.0061 1.3E-07 56.9 11.8 142 119-263 1-177 (182)
164 PF11865 DUF3385: Domain of un 97.1 0.0051 1.1E-07 56.7 11.0 146 374-533 7-158 (160)
165 KOG0413 Uncharacterized conser 97.1 0.81 1.8E-05 52.4 38.8 106 183-302 575-684 (1529)
166 PF08569 Mo25: Mo25-like; Int 97.0 0.38 8.3E-06 50.3 25.0 188 108-304 81-284 (335)
167 PF08064 UME: UME (NUC010) dom 97.0 0.012 2.5E-07 50.0 11.4 98 497-600 5-106 (107)
168 PF02985 HEAT: HEAT repeat; I 96.9 0.0018 3.9E-08 40.6 4.3 31 378-408 1-31 (31)
169 PF10274 ParcG: Parkin co-regu 96.9 0.019 4.2E-07 53.0 12.0 90 376-466 37-130 (183)
170 PF13001 Ecm29: Proteasome sta 96.8 0.8 1.7E-05 51.5 27.3 176 354-536 253-447 (501)
171 KOG1243 Protein kinase [Genera 96.8 0.021 4.6E-07 62.9 13.9 253 242-534 265-517 (690)
172 smart00802 UME Domain in UVSB 96.8 0.02 4.4E-07 48.1 10.8 97 497-599 5-105 (107)
173 PF12719 Cnd3: Nuclear condens 96.8 0.46 1E-05 49.6 23.5 166 380-554 30-207 (298)
174 TIGR02270 conserved hypothetic 96.7 0.37 8.1E-06 52.0 22.5 57 418-490 240-296 (410)
175 PF13001 Ecm29: Proteasome sta 96.7 1.5 3.3E-05 49.3 29.8 84 23-114 24-113 (501)
176 PF10521 DUF2454: Protein of u 96.7 0.032 7E-07 57.4 13.7 167 388-555 86-276 (282)
177 PF12719 Cnd3: Nuclear condens 96.7 0.1 2.2E-06 54.4 17.6 149 415-576 23-180 (298)
178 TIGR02270 conserved hypothetic 96.6 1.1 2.3E-05 48.6 25.3 241 105-447 56-296 (410)
179 KOG0414 Chromosome condensatio 96.6 2.3 5.1E-05 50.4 61.3 626 21-743 269-1028(1251)
180 cd00256 VATPase_H VATPase_H, r 96.6 1.4 3E-05 47.6 28.4 300 63-405 108-424 (429)
181 KOG4500 Rho/Rac GTPase guanine 96.6 1.1 2.4E-05 46.6 23.1 115 375-492 313-433 (604)
182 COG5116 RPN2 26S proteasome re 96.5 0.023 5E-07 60.4 11.4 155 379-555 518-673 (926)
183 KOG0413 Uncharacterized conser 96.5 2.3 4.9E-05 49.1 26.6 144 392-551 946-1090(1529)
184 PF05536 Neurochondrin: Neuroc 96.4 2.4 5.3E-05 48.0 32.1 321 517-890 71-438 (543)
185 KOG2025 Chromosome condensatio 96.4 0.3 6.6E-06 53.9 18.9 109 373-486 81-189 (892)
186 KOG1293 Proteins containing ar 96.3 2.4 5.1E-05 47.0 34.4 180 244-449 66-263 (678)
187 KOG0392 SNF2 family DNA-depend 96.3 0.046 9.9E-07 63.9 12.8 171 356-535 751-928 (1549)
188 PF11865 DUF3385: Domain of un 96.3 0.042 9.1E-07 50.7 10.4 146 416-576 8-156 (160)
189 PF01603 B56: Protein phosphat 96.3 0.39 8.5E-06 52.3 19.5 240 20-271 131-381 (409)
190 PF08767 CRM1_C: CRM1 C termin 96.2 0.71 1.5E-05 48.4 20.3 190 518-743 42-245 (319)
191 KOG2149 Uncharacterized conser 96.0 0.16 3.5E-06 52.6 13.9 132 422-555 62-193 (393)
192 KOG2137 Protein kinase [Signal 96.0 0.31 6.8E-06 54.4 16.9 133 414-553 385-517 (700)
193 smart00802 UME Domain in UVSB 96.0 0.058 1.2E-06 45.4 8.8 97 411-511 4-104 (107)
194 PF08064 UME: UME (NUC010) dom 96.0 0.077 1.7E-06 45.1 9.7 98 412-513 5-106 (107)
195 KOG1048 Neural adherens juncti 95.9 3.4 7.5E-05 46.9 24.8 340 141-490 230-641 (717)
196 KOG0946 ER-Golgi vesicle-tethe 95.9 4.1 8.8E-05 46.2 34.0 180 142-331 21-218 (970)
197 KOG1949 Uncharacterized conser 95.9 0.84 1.8E-05 50.5 19.2 216 68-304 99-332 (1005)
198 PF10521 DUF2454: Protein of u 95.8 0.19 4.1E-06 51.7 13.8 146 139-285 115-278 (282)
199 KOG1525 Sister chromatid cohes 95.7 7.9 0.00017 47.8 43.0 158 360-520 244-441 (1266)
200 KOG2160 Armadillo/beta-catenin 95.7 0.25 5.3E-06 50.6 13.6 144 154-304 94-241 (342)
201 KOG2933 Uncharacterized conser 95.7 0.21 4.6E-06 49.7 12.6 127 358-493 108-237 (334)
202 PF12231 Rif1_N: Rap1-interact 95.6 4.1 8.8E-05 44.0 32.3 316 198-575 6-350 (372)
203 KOG1517 Guanine nucleotide bin 95.6 0.69 1.5E-05 53.6 17.9 144 118-263 571-735 (1387)
204 PF03224 V-ATPase_H_N: V-ATPas 95.5 0.21 4.6E-06 52.5 13.3 229 53-292 52-303 (312)
205 PF04118 Dopey_N: Dopey, N-ter 95.5 3.3 7.1E-05 42.7 21.2 112 409-529 129-251 (307)
206 PF01603 B56: Protein phosphat 95.4 5.1 0.00011 43.8 24.4 99 199-303 269-370 (409)
207 COG5098 Chromosome condensatio 95.4 2.9 6.2E-05 46.5 20.7 110 379-491 301-416 (1128)
208 KOG1851 Uncharacterized conser 95.3 11 0.00023 46.6 33.8 175 357-537 1506-1683(1710)
209 KOG2025 Chromosome condensatio 95.3 6.6 0.00014 44.1 39.3 195 96-303 78-294 (892)
210 PF08767 CRM1_C: CRM1 C termin 95.3 3 6.4E-05 43.8 20.5 101 390-490 133-244 (319)
211 PF10363 DUF2435: Protein of u 95.2 0.29 6.3E-06 40.0 10.2 83 461-553 4-86 (92)
212 KOG2137 Protein kinase [Signal 95.1 1.7 3.6E-05 48.9 18.5 113 140-262 386-498 (700)
213 KOG1837 Uncharacterized conser 94.9 5.9 0.00013 48.7 23.5 68 561-632 1554-1621(1621)
214 KOG1243 Protein kinase [Genera 94.9 0.45 9.7E-06 53.0 13.6 191 269-493 327-518 (690)
215 COG5218 YCG1 Chromosome conden 94.9 1.1 2.3E-05 48.6 15.6 178 23-209 12-194 (885)
216 cd08050 TAF6 TATA Binding Prot 94.8 0.21 4.6E-06 52.8 10.6 128 360-488 197-338 (343)
217 KOG2759 Vacuolar H+-ATPase V1 94.8 6.3 0.00014 41.4 27.1 345 97-490 79-438 (442)
218 KOG2549 Transcription initiati 94.7 2.9 6.4E-05 45.4 18.5 148 413-577 206-370 (576)
219 KOG0567 HEAT repeat-containing 94.7 3.5 7.6E-05 40.4 17.1 60 418-489 67-128 (289)
220 KOG2149 Uncharacterized conser 94.6 1.3 2.8E-05 46.2 15.3 127 384-512 65-191 (393)
221 PF12530 DUF3730: Protein of u 94.6 4.6 0.0001 40.2 19.0 198 34-247 13-219 (234)
222 COG5095 TAF6 Transcription ini 94.4 2.4 5.3E-05 41.9 15.6 150 412-577 195-359 (450)
223 PF00790 VHS: VHS domain; Int 94.3 1 2.3E-05 40.6 12.5 97 499-595 38-136 (140)
224 PF08623 TIP120: TATA-binding 94.1 1.1 2.3E-05 41.3 12.1 97 455-555 4-117 (169)
225 PF12054 DUF3535: Domain of un 94.1 10 0.00022 41.8 21.9 80 431-515 100-180 (441)
226 COG5231 VMA13 Vacuolar H+-ATPa 93.9 7.8 0.00017 39.0 19.3 69 378-446 357-427 (432)
227 KOG0803 Predicted E3 ubiquitin 93.8 6 0.00013 48.9 20.8 251 186-450 43-307 (1312)
228 KOG1949 Uncharacterized conser 93.8 0.72 1.6E-05 51.0 11.8 150 379-531 176-330 (1005)
229 PF04118 Dopey_N: Dopey, N-ter 93.8 2.1 4.6E-05 44.1 14.8 156 380-537 14-172 (307)
230 KOG2549 Transcription initiati 93.7 1.4 3.1E-05 47.7 13.7 153 360-513 226-393 (576)
231 COG5116 RPN2 26S proteasome re 93.7 4.4 9.6E-05 43.9 17.1 158 105-285 517-675 (926)
232 PF10363 DUF2435: Protein of u 93.7 0.86 1.9E-05 37.3 9.6 75 186-267 5-79 (92)
233 cd08050 TAF6 TATA Binding Prot 93.6 0.69 1.5E-05 49.0 11.5 129 412-555 176-320 (343)
234 PF12231 Rif1_N: Rap1-interact 93.4 13 0.00029 40.0 36.6 309 413-806 34-362 (372)
235 cd03561 VHS VHS domain family; 93.1 1.6 3.5E-05 38.9 11.4 101 386-494 13-116 (133)
236 cd03568 VHS_STAM VHS domain fa 93.1 2.3 5E-05 38.4 12.3 102 385-494 12-114 (144)
237 PF08623 TIP120: TATA-binding 93.0 0.95 2.1E-05 41.7 9.8 94 628-744 3-96 (169)
238 COG5657 CSE1 CAS/CSE protein i 92.6 25 0.00054 41.1 37.1 156 67-240 14-179 (947)
239 cd03569 VHS_Hrs_Vps27p VHS dom 92.6 2.4 5.3E-05 38.2 11.8 113 385-508 16-129 (142)
240 KOG1851 Uncharacterized conser 92.6 34 0.00074 42.6 35.6 181 432-625 1501-1681(1710)
241 KOG4199 Uncharacterized conser 92.5 14 0.00029 37.7 25.8 307 386-741 116-443 (461)
242 KOG3961 Uncharacterized conser 92.4 0.52 1.1E-05 44.0 7.2 93 458-552 112-207 (262)
243 PF01347 Vitellogenin_N: Lipop 92.3 13 0.00028 43.7 21.0 140 57-211 432-586 (618)
244 smart00638 LPD_N Lipoprotein N 92.2 10 0.00022 44.0 19.7 142 140-301 390-543 (574)
245 KOG1222 Kinesin associated pro 92.1 19 0.00042 38.5 21.7 94 394-489 280-373 (791)
246 KOG2062 26S proteasome regulat 92.0 26 0.00056 39.8 40.4 108 688-824 572-679 (929)
247 smart00638 LPD_N Lipoprotein N 92.0 11 0.00023 43.9 19.4 133 378-527 394-540 (574)
248 PF00514 Arm: Armadillo/beta-c 91.9 0.31 6.8E-06 32.8 4.1 29 418-446 12-40 (41)
249 COG5095 TAF6 Transcription ini 91.8 3.6 7.9E-05 40.7 12.5 121 370-491 227-360 (450)
250 PF12054 DUF3535: Domain of un 91.5 14 0.0003 40.8 18.4 56 199-262 101-157 (441)
251 PF12074 DUF3554: Domain of un 91.4 22 0.00048 37.9 21.3 220 100-333 19-256 (339)
252 KOG3036 Protein involved in ce 91.4 13 0.00029 36.0 15.4 201 1-214 1-247 (293)
253 cd03568 VHS_STAM VHS domain fa 91.4 4.7 0.0001 36.4 12.2 94 499-595 33-128 (144)
254 smart00288 VHS Domain present 90.9 5.8 0.00013 35.3 12.2 79 500-580 34-114 (133)
255 PF03224 V-ATPase_H_N: V-ATPas 90.8 7.5 0.00016 40.9 15.2 132 419-556 106-251 (312)
256 PF08161 NUC173: NUC173 domain 90.7 4.5 9.7E-05 38.8 12.1 121 508-642 5-125 (198)
257 PF00790 VHS: VHS domain; Int 90.6 3.6 7.8E-05 37.1 10.9 87 416-505 40-130 (140)
258 KOG2081 Nuclear transport regu 90.5 31 0.00067 38.0 40.2 153 430-595 401-554 (559)
259 KOG1525 Sister chromatid cohes 90.5 56 0.0012 40.8 40.1 298 111-448 57-406 (1266)
260 smart00288 VHS Domain present 90.3 6.8 0.00015 34.9 12.2 78 417-494 36-115 (133)
261 KOG1048 Neural adherens juncti 90.3 40 0.00086 38.9 24.2 110 422-533 237-350 (717)
262 PF12830 Nipped-B_C: Sister ch 90.2 9.3 0.0002 36.5 13.9 65 23-88 9-76 (187)
263 cd03567 VHS_GGA VHS domain fam 89.8 7.9 0.00017 34.7 12.0 102 384-493 12-119 (139)
264 PF08389 Xpo1: Exportin 1-like 89.7 3.4 7.3E-05 37.7 10.3 105 375-485 24-148 (148)
265 KOG1789 Endocytosis protein RM 89.6 52 0.0011 39.2 23.0 139 158-304 1740-1884(2235)
266 COG5218 YCG1 Chromosome conden 89.2 40 0.00086 37.3 32.3 164 23-210 92-262 (885)
267 cd03569 VHS_Hrs_Vps27p VHS dom 89.1 5.9 0.00013 35.7 10.8 80 500-582 38-119 (142)
268 KOG2038 CAATT-binding transcri 89.0 48 0.001 38.0 24.6 139 144-303 268-409 (988)
269 PF14664 RICTOR_N: Rapamycin-i 88.9 32 0.0007 36.9 18.1 150 139-303 21-176 (371)
270 PF01347 Vitellogenin_N: Lipop 88.9 34 0.00074 40.2 20.4 101 181-301 487-587 (618)
271 cd03561 VHS VHS domain family; 88.5 8.8 0.00019 34.2 11.6 81 500-581 34-116 (133)
272 PF00514 Arm: Armadillo/beta-c 88.2 0.97 2.1E-05 30.4 4.1 31 458-489 10-40 (41)
273 PF12333 Ipi1_N: Rix1 complex 88.0 4.5 9.7E-05 34.0 8.8 62 410-471 3-64 (102)
274 PF11698 V-ATPase_H_C: V-ATPas 88.0 2.4 5.2E-05 36.3 7.1 70 418-490 43-115 (119)
275 KOG4500 Rho/Rac GTPase guanine 88.0 40 0.00087 35.8 26.2 74 141-214 313-390 (604)
276 KOG2005 26S proteasome regulat 87.8 53 0.0011 37.0 20.6 80 378-467 641-720 (878)
277 PF11698 V-ATPase_H_C: V-ATPas 86.4 2.5 5.3E-05 36.3 6.3 70 143-214 43-115 (119)
278 KOG0803 Predicted E3 ubiquitin 86.1 63 0.0014 40.5 20.1 105 383-489 47-152 (1312)
279 PF12530 DUF3730: Protein of u 86.0 39 0.00084 33.7 22.4 198 61-284 5-215 (234)
280 PF11864 DUF3384: Domain of un 85.6 67 0.0014 36.0 38.3 241 38-303 6-285 (464)
281 PF04388 Hamartin: Hamartin pr 85.4 33 0.00071 40.2 16.9 125 140-271 67-203 (668)
282 KOG2213 Apoptosis inhibitor 5/ 85.2 53 0.0012 34.5 16.0 19 285-303 72-90 (460)
283 KOG0929 Guanine nucleotide exc 85.1 85 0.0018 39.7 20.3 164 113-282 1046-1226(1514)
284 KOG1848 Uncharacterized conser 85.0 1E+02 0.0022 38.3 20.2 177 387-586 852-1034(1610)
285 PF04388 Hamartin: Hamartin pr 84.6 34 0.00075 40.0 16.6 96 180-281 66-161 (668)
286 PF07571 DUF1546: Protein of u 84.6 4.8 0.0001 33.0 7.1 63 852-918 18-81 (92)
287 PF12726 SEN1_N: SEN1 N termin 84.5 1E+02 0.0022 37.0 32.5 180 417-597 119-322 (727)
288 PF09324 DUF1981: Domain of un 83.2 6.1 0.00013 32.0 7.1 67 143-210 17-84 (86)
289 PF12765 Cohesin_HEAT: HEAT re 83.0 1.8 3.8E-05 29.3 3.2 26 417-442 17-42 (42)
290 PF09324 DUF1981: Domain of un 83.0 11 0.00025 30.4 8.5 70 182-256 15-84 (86)
291 KOG2973 Uncharacterized conser 82.8 6.2 0.00014 39.6 8.1 106 421-532 6-111 (353)
292 KOG2973 Uncharacterized conser 82.7 8.2 0.00018 38.8 8.9 104 382-490 8-111 (353)
293 cd03565 VHS_Tom1 VHS domain fa 82.6 22 0.00048 32.0 11.1 102 385-494 13-119 (141)
294 PF07571 DUF1546: Protein of u 82.5 3.9 8.5E-05 33.6 5.8 59 388-446 17-77 (92)
295 PF12830 Nipped-B_C: Sister ch 82.5 40 0.00086 32.2 13.6 69 143-216 8-76 (187)
296 KOG2199 Signal transducing ada 82.4 12 0.00027 38.8 10.2 110 378-495 13-123 (462)
297 PF14222 MOR2-PAG1_N: Cell mor 82.2 1E+02 0.0022 35.3 33.1 412 95-535 27-503 (552)
298 KOG2011 Sister chromatid cohes 81.7 1.3E+02 0.0029 36.5 19.5 128 394-525 262-392 (1048)
299 PLN03205 ATR interacting prote 80.8 78 0.0017 33.2 17.5 206 122-330 302-548 (652)
300 PF12397 U3snoRNP10: U3 small 80.7 20 0.00044 31.3 10.1 74 373-449 2-76 (121)
301 cd03567 VHS_GGA VHS domain fam 80.5 42 0.00092 30.1 12.0 75 377-451 38-120 (139)
302 PF12333 Ipi1_N: Rix1 complex 80.5 5.6 0.00012 33.5 6.1 62 495-556 3-65 (102)
303 PF11919 DUF3437: Domain of un 80.3 2.7 5.9E-05 34.1 4.0 61 392-453 4-64 (90)
304 PF04510 DUF577: Family of unk 80.0 21 0.00047 32.7 9.9 103 690-797 61-164 (174)
305 KOG0567 HEAT repeat-containing 79.9 67 0.0015 31.9 21.6 91 419-531 188-279 (289)
306 PF08713 DNA_alkylation: DNA a 79.3 55 0.0012 32.0 14.0 145 376-544 50-196 (213)
307 cd03572 ENTH_epsin_related ENT 78.8 35 0.00076 29.7 10.4 76 414-490 34-119 (122)
308 PF12074 DUF3554: Domain of un 78.5 98 0.0021 33.0 19.8 176 372-554 56-254 (339)
309 KOG3961 Uncharacterized conser 78.3 4.3 9.3E-05 38.2 5.1 88 378-466 115-205 (262)
310 PF14225 MOR2-PAG1_C: Cell mor 78.2 81 0.0018 31.9 14.6 75 455-535 183-257 (262)
311 smart00185 ARM Armadillo/beta- 78.2 3 6.5E-05 27.7 3.3 28 419-446 13-40 (41)
312 cd03565 VHS_Tom1 VHS domain fa 78.1 52 0.0011 29.6 12.3 95 500-595 35-133 (141)
313 PF14868 DUF4487: Domain of un 78.0 1.3E+02 0.0028 34.2 25.2 69 121-190 245-314 (559)
314 cd03572 ENTH_epsin_related ENT 78.0 17 0.00036 31.6 8.3 75 501-575 36-117 (122)
315 cd00197 VHS_ENTH_ANTH VHS, ENT 78.0 31 0.00067 29.7 10.4 74 415-488 34-113 (115)
316 COG5369 Uncharacterized conser 77.6 9.5 0.00021 41.3 8.0 135 395-532 407-545 (743)
317 cd00197 VHS_ENTH_ANTH VHS, ENT 77.4 31 0.00067 29.7 10.2 74 373-446 33-114 (115)
318 PF08569 Mo25: Mo25-like; Int 77.4 1E+02 0.0022 32.6 26.9 182 69-261 88-284 (335)
319 PF08713 DNA_alkylation: DNA a 77.2 4.6 9.9E-05 39.7 5.6 72 376-453 119-190 (213)
320 KOG2038 CAATT-binding transcri 75.8 1.6E+02 0.0035 34.1 26.4 72 226-303 299-370 (988)
321 PF11701 UNC45-central: Myosin 75.6 15 0.00031 34.0 8.0 131 354-487 21-156 (157)
322 COG5098 Chromosome condensatio 75.3 1.6E+02 0.0034 33.7 40.5 109 106-217 302-418 (1128)
323 PF08161 NUC173: NUC173 domain 74.9 82 0.0018 30.3 14.3 58 396-453 19-76 (198)
324 PF14668 RICTOR_V: Rapamycin-i 74.2 8.9 0.00019 29.7 5.1 55 393-449 3-60 (73)
325 KOG4199 Uncharacterized conser 73.9 1.1E+02 0.0025 31.5 33.4 112 416-530 330-442 (461)
326 PF11701 UNC45-central: Myosin 73.6 34 0.00074 31.5 9.9 131 68-210 16-155 (157)
327 KOG2085 Serine/threonine prote 73.2 40 0.00088 35.6 10.9 276 1-303 126-414 (457)
328 KOG2256 Predicted protein invo 72.3 1.8E+02 0.0039 33.1 18.4 178 414-597 278-475 (661)
329 PF12783 Sec7_N: Guanine nucle 72.0 75 0.0016 29.7 12.1 105 199-303 36-146 (168)
330 PF04078 Rcd1: Cell differenti 70.9 1.2E+02 0.0026 30.4 15.1 75 140-215 91-169 (262)
331 COG4912 Predicted DNA alkylati 70.6 23 0.0005 34.0 8.0 84 361-450 102-186 (222)
332 cd06561 AlkD_like A new struct 69.7 19 0.00042 34.7 7.9 68 380-452 108-175 (197)
333 PF04078 Rcd1: Cell differenti 69.7 31 0.00068 34.3 8.9 56 117-172 109-168 (262)
334 PF14222 MOR2-PAG1_N: Cell mor 69.6 2.1E+02 0.0046 32.8 28.1 103 107-214 133-249 (552)
335 cd00870 PI3Ka_III Phosphoinosi 69.3 44 0.00096 31.0 9.5 67 34-116 58-125 (166)
336 PF12765 Cohesin_HEAT: HEAT re 69.3 7.7 0.00017 26.2 3.4 40 167-209 3-42 (42)
337 KOG1877 Putative transmembrane 69.1 2.3E+02 0.005 33.5 16.8 141 185-334 57-206 (819)
338 smart00185 ARM Armadillo/beta- 68.7 7.4 0.00016 25.8 3.4 29 460-489 12-40 (41)
339 PF03542 Tuberin: Tuberin; In 68.5 1.7E+02 0.0037 31.2 18.3 117 198-330 210-328 (356)
340 PF14668 RICTOR_V: Rapamycin-i 67.8 16 0.00034 28.4 5.2 54 435-491 4-59 (73)
341 PF08146 BP28CT: BP28CT (NUC21 67.7 25 0.00055 32.2 7.5 84 562-645 35-119 (153)
342 cd00872 PI3Ka_I Phosphoinositi 66.6 50 0.0011 30.8 9.2 59 21-83 38-97 (171)
343 KOG1087 Cytosolic sorting prot 66.1 85 0.0018 34.6 12.2 114 383-506 11-126 (470)
344 PF12397 U3snoRNP10: U3 small 65.9 91 0.002 27.1 11.1 74 414-492 2-76 (121)
345 PF14631 FancD2: Fanconi anaem 65.8 45 0.00097 42.7 11.5 119 409-534 426-544 (1426)
346 PF14664 RICTOR_N: Rapamycin-i 64.9 2.1E+02 0.0045 30.9 20.0 230 232-491 26-270 (371)
347 cd00864 PI3Ka Phosphoinositide 64.2 57 0.0012 29.8 9.1 81 20-116 37-118 (152)
348 PF08146 BP28CT: BP28CT (NUC21 64.0 94 0.002 28.5 10.5 81 476-556 36-120 (153)
349 KOG2122 Beta-catenin-binding p 63.2 4.1E+02 0.009 33.8 23.2 72 378-449 531-603 (2195)
350 KOG3687 Tuberin - Rap/ran-GTPa 62.7 3.4E+02 0.0073 32.6 34.5 53 766-819 648-700 (1697)
351 PF12783 Sec7_N: Guanine nucle 62.7 1E+02 0.0022 28.8 10.9 100 390-491 35-147 (168)
352 PF11935 DUF3453: Domain of un 62.3 1.7E+02 0.0038 29.2 15.8 127 193-330 2-162 (239)
353 PF11919 DUF3437: Domain of un 61.7 18 0.0004 29.4 4.8 56 687-744 5-60 (90)
354 PF00613 PI3Ka: Phosphoinositi 61.6 41 0.00088 32.0 7.9 78 22-115 45-123 (184)
355 KOG2122 Beta-catenin-binding p 61.2 4.5E+02 0.0097 33.5 21.5 74 418-492 530-603 (2195)
356 COG5369 Uncharacterized conser 60.4 1.3E+02 0.0027 33.3 11.8 176 357-533 408-595 (743)
357 KOG1087 Cytosolic sorting prot 60.3 98 0.0021 34.2 11.4 95 500-596 35-132 (470)
358 PF07539 DRIM: Down-regulated 59.9 1.3E+02 0.0029 27.0 10.6 81 417-512 16-97 (141)
359 KOG2199 Signal transducing ada 59.5 1.3E+02 0.0029 31.6 11.3 76 376-451 44-122 (462)
360 PF11935 DUF3453: Domain of un 59.0 2E+02 0.0043 28.8 16.7 121 427-553 2-162 (239)
361 PF14961 BROMI: Broad-minded p 58.7 4.5E+02 0.0097 32.7 22.7 135 146-283 164-316 (1296)
362 KOG3036 Protein involved in ce 58.4 1.6E+02 0.0035 29.0 11.0 74 140-214 120-197 (293)
363 KOG2020 Nuclear transport rece 57.5 4.6E+02 0.01 32.5 32.4 71 458-529 548-625 (1041)
364 KOG2256 Predicted protein invo 57.4 3.4E+02 0.0075 31.0 18.5 182 456-639 278-473 (661)
365 PF14225 MOR2-PAG1_C: Cell mor 57.3 2.2E+02 0.0048 28.8 21.0 126 120-263 131-257 (262)
366 PF03130 HEAT_PBS: PBS lyase H 57.0 8.5 0.00018 23.0 1.7 14 434-447 1-14 (27)
367 PF12612 TFCD_C: Tubulin foldi 54.9 2E+02 0.0044 27.6 12.3 133 415-555 4-138 (193)
368 cd03562 CID CID (CTD-Interacti 54.2 1E+02 0.0022 26.5 8.6 83 429-522 16-98 (114)
369 PF11841 DUF3361: Domain of un 53.8 1.7E+02 0.0037 26.9 10.0 101 433-536 32-135 (160)
370 KOG1837 Uncharacterized conser 52.8 6.1E+02 0.013 32.5 39.4 95 477-580 1520-1614(1621)
371 KOG2213 Apoptosis inhibitor 5/ 52.0 3.2E+02 0.007 29.1 21.6 68 433-513 39-106 (460)
372 PF12243 CTK3: CTD kinase subu 51.8 74 0.0016 28.4 7.3 77 424-511 14-92 (139)
373 smart00145 PI3Ka Phosphoinosit 51.5 1.3E+02 0.0027 28.7 9.3 79 21-115 43-122 (184)
374 PF03542 Tuberin: Tuberin; In 50.8 3.4E+02 0.0074 29.0 18.7 169 103-282 141-329 (356)
375 KOG1877 Putative transmembrane 50.1 5.1E+02 0.011 30.8 22.1 210 427-643 65-308 (819)
376 cd00869 PI3Ka_II Phosphoinosit 49.8 1.4E+02 0.003 27.8 9.0 32 117-153 84-115 (169)
377 KOG0929 Guanine nucleotide exc 49.7 6.9E+02 0.015 32.2 23.7 128 683-824 1186-1325(1514)
378 PF14838 INTS5_C: Integrator c 44.3 5.9E+02 0.013 29.9 23.8 93 181-278 311-407 (696)
379 smart00582 RPR domain present 44.1 1.3E+02 0.0028 26.1 7.9 60 423-493 5-64 (121)
380 cd07064 AlkD_like_1 A new stru 43.9 1.3E+02 0.0028 29.4 8.5 78 376-460 114-191 (208)
381 PF14911 MMS22L_C: S-phase gen 43.6 4.4E+02 0.0096 28.3 20.4 39 500-538 66-104 (373)
382 KOG1848 Uncharacterized conser 43.4 8E+02 0.017 31.2 26.5 129 140-268 880-1034(1610)
383 PF12726 SEN1_N: SEN1 N termin 43.2 6.6E+02 0.014 30.2 37.9 58 433-492 496-555 (727)
384 smart00567 EZ_HEAT E-Z type HE 43.2 28 0.00061 21.2 2.5 14 391-404 1-14 (30)
385 PF10350 DUF2428: Putative dea 38.2 4.4E+02 0.0095 26.7 14.4 162 390-553 60-249 (255)
386 PF06371 Drf_GBD: Diaphanous G 38.1 2.6E+02 0.0056 26.5 9.7 60 429-489 127-186 (187)
387 PF12612 TFCD_C: Tubulin foldi 37.0 3.8E+02 0.0083 25.6 15.0 154 99-261 3-159 (193)
388 PF11707 Npa1: Ribosome 60S bi 36.6 5.4E+02 0.012 27.2 21.6 73 232-304 57-144 (330)
389 KOG3687 Tuberin - Rap/ran-GTPa 35.6 8.9E+02 0.019 29.4 24.3 86 429-519 441-530 (1697)
390 PF09759 Atx10homo_assoc: Spin 35.4 1.4E+02 0.003 25.1 6.0 58 435-493 3-62 (102)
391 KOG3678 SARM protein (with ste 34.8 6.3E+02 0.014 27.5 14.5 142 21-172 179-336 (832)
392 PF01465 GRIP: GRIP domain; I 32.9 1E+02 0.0022 21.4 4.2 34 99-133 3-36 (46)
393 PF14676 FANCI_S2: FANCI solen 32.4 4.1E+02 0.0088 24.5 10.2 118 76-209 37-156 (158)
394 COG5231 VMA13 Vacuolar H+-ATPa 32.1 5.9E+02 0.013 26.4 19.0 71 418-490 356-428 (432)
395 PF00325 Crp: Bacterial regula 31.2 67 0.0015 20.3 2.7 26 7-32 2-27 (32)
396 KOG1566 Conserved protein Mo25 31.2 6.2E+02 0.013 26.3 15.5 238 3-248 61-321 (342)
397 PF14228 MOR2-PAG1_mid: Cell m 30.4 1.2E+03 0.026 29.5 30.3 148 710-887 541-692 (1120)
398 KOG2842 Interferon-related pro 29.6 7.2E+02 0.016 26.6 16.7 210 387-600 70-299 (427)
399 PF07539 DRIM: Down-regulated 29.4 4.3E+02 0.0092 23.8 10.0 89 140-242 14-103 (141)
400 KOG2153 Protein involved in th 28.8 9.5E+02 0.021 27.7 19.3 36 456-492 320-355 (704)
401 KOG2059 Ras GTPase-activating 27.0 2.8E+02 0.006 32.0 8.3 88 356-444 360-447 (800)
402 PF13925 Katanin_con80: con80 26.9 1.7E+02 0.0036 27.3 5.9 54 124-178 46-104 (164)
403 PF11707 Npa1: Ribosome 60S bi 26.6 7.8E+02 0.017 26.0 19.7 159 420-578 58-238 (330)
404 KOG4646 Uncharacterized conser 26.4 4.7E+02 0.01 23.3 11.0 101 384-490 24-128 (173)
405 cd03562 CID CID (CTD-Interacti 25.9 4.2E+02 0.0091 22.6 8.6 70 142-212 36-106 (114)
406 KOG0889 Histone acetyltransfer 25.3 2.2E+03 0.049 30.9 58.6 171 459-634 983-1167(3550)
407 PF10193 Telomere_reg-2: Telom 25.3 3.9E+02 0.0085 23.0 7.4 57 244-300 18-79 (114)
408 PF14676 FANCI_S2: FANCI solen 25.1 5.5E+02 0.012 23.7 8.9 83 163-256 75-157 (158)
409 PF14228 MOR2-PAG1_mid: Cell m 25.1 1.5E+03 0.032 28.7 29.4 69 419-490 504-572 (1120)
410 KOG2999 Regulator of Rac1, req 24.7 1E+03 0.023 26.8 12.8 151 23-177 84-247 (713)
411 PF05327 RRN3: RNA polymerase 24.6 1.1E+03 0.024 27.2 22.9 54 271-330 345-398 (563)
412 PF09026 CENP-B_dimeris: Centr 23.8 1.1E+02 0.0024 24.9 3.4 13 860-872 49-61 (101)
413 PF14961 BROMI: Broad-minded p 23.6 2.3E+02 0.005 35.0 7.4 73 106-178 164-237 (1296)
414 PF01417 ENTH: ENTH domain; I 23.6 1.6E+02 0.0035 25.8 5.0 70 125-194 21-93 (125)
415 PRK04964 hypothetical protein; 22.9 2E+02 0.0043 21.2 4.1 51 692-742 5-60 (66)
416 KOG4190 Uncharacterized conser 22.1 1.1E+03 0.024 26.2 12.0 118 692-821 417-553 (1034)
417 PF06786 UPF0253: Uncharacteri 22.0 2.1E+02 0.0046 21.1 4.1 51 692-742 5-60 (66)
418 COG5110 RPN1 26S proteasome re 21.9 1.2E+03 0.025 26.3 15.2 214 376-597 449-725 (881)
419 PF08324 PUL: PUL domain; Int 21.6 6.6E+02 0.014 25.5 9.9 114 417-531 109-230 (268)
420 KOG4541 Nuclear transport rece 21.3 1.2E+03 0.026 26.3 12.8 135 157-301 571-713 (748)
421 PF14631 FancD2: Fanconi anaem 21.2 2E+03 0.042 28.7 31.7 120 361-488 421-540 (1426)
422 cd06561 AlkD_like A new struct 21.1 7.2E+02 0.016 23.6 16.3 73 463-542 108-180 (197)
423 PF09280 XPC-binding: XPC-bind 20.8 3.5E+02 0.0075 20.1 5.3 41 12-60 12-52 (59)
424 KOG1789 Endocytosis protein RM 20.4 1.7E+03 0.037 27.7 27.8 151 37-196 1740-1910(2235)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-115 Score=954.80 Aligned_cols=876 Identities=47% Similarity=0.784 Sum_probs=811.9
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCH
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (919)
||.++|.+++..+++|||++|++||+.|+....+.| .++.|.+++.++.+|++|++|++++||++.+. |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 678899999999999999999999999997655344 67999999999999999999999999999986 999999
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 002465 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 178 (919)
++++.||+.++.++.+|+.+.||+++|++++.+++.+++. .||+++++++++.+|+++..|+.|+.+|..+.+.++..+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhc-CcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002465 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (919)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~ 257 (919)
.+|++.+.++|.+++.++ +..||.+|+++++.++.+.+ ++.....|..++|.+++++...+++++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999999 55599999999999999985 4556788999999999999999999999999999999999
Q ss_pred HHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 002465 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (919)
Q Consensus 258 l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~ 337 (919)
+++..|+.+++++..++++++.+..|++.++.+|..|++++.+++++ +|.+.|+.+++...+++.++.+|.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 99999999999999999999999999999999999999999999994 899999988999999999999999999899
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~ 417 (919)
+|.+.++.|+|+ +.+++..|.+++++++.++|++.++|.+++++..+++|++|+.|+|++++|+.+++||.+.+...++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999987766655 5678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccc
Q 002465 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l 497 (919)
++++.++++++|+||+||++|+.++|++++++.|.++..+...+.|.++..+.+..+++|+.+|+.++.+|.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999988888889999999999977889999999999999999999999
Q ss_pred cCcHHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 002465 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (919)
Q Consensus 498 ~~~l~~i~~-~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~ 576 (919)
.||++.+++ .+..+++++++.+|+.++.+||++|..++..|.||++.+||.|.+++.+.++++.+.+|++.++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667888999999999999999999999999999999999999999888889999999999999999
Q ss_pred hhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCC
Q 002465 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (919)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (919)
.++|++.|.|++.++++.+..++.+..+.|++.++|.+.+|+++|+++|++|.||+|.++|.+++..+.+|+....|++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~- 627 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEE- 627 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCch-
Confidence 9999999999999999999998877777889999999999999999999999999999999999999999988777433
Q ss_pred CcccccCCCcccchhccCCe-eeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHH
Q 002465 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (919)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~ 735 (919)
++++..++++|+++.++|+ .++|+|++++||+.||..|+.++..++.+|.||++++++..++.+..++|++||.+|+.
T Consensus 628 -d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 628 -DEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred -hhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2333347788999988887 99999999999999999999999999999999999999988888899999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHH
Q 002465 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDE 814 (919)
Q Consensus 736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~-~~~~~~~~i~~~ 814 (919)
+++.++++...++.. .+.+++++++.++|.+++.+..|++++++.+++++++.+|+.+|+. +.++.+..+...
T Consensus 707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 999999998876533 3568999999999999999999999999999999999999999974 888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC
Q 002465 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (919)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 894 (919)
+...+.....|...++++...+|+|++|+|..+ |+|..+.+.+.+++..+++.+|..|.|+|.+++|.+..++.+++
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 888888888877777665444555555555444 78999999999999999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhc
Q 002465 895 TAEERRIAICIFDDVAEQCREAAL 918 (919)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~ 918 (919)
+.. |++|+|+++|++++||+.+.
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~ 880 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASA 880 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccc
Confidence 777 99999999999999998764
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-67 Score=536.18 Aligned_cols=759 Identities=22% Similarity=0.294 Sum_probs=618.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 22 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
+++.++|++.+|||+++|+.+...+.+++. .|+ |..+|+.+|.. +.+..+|.+|+.+|||.++.+ |..++++
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~ 86 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSE 86 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc----ccCCChH
Confidence 456667888999999999999999999998 787 56888888875 677888999999999999987 9999999
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc-
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL- 178 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~- 178 (919)
...++|+..++++.. +++.+|...+.+|..|++... ...||+++|.+.+++.+++.+..++|+.+|..||+...+.+
T Consensus 87 ~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHHHhhccC-chHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 999999999999996 788999999999999988643 36999999999999999999999999999999999866543
Q ss_pred ----cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002465 179 ----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (919)
Q Consensus 179 ----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~ 254 (919)
..-++-++|.|++..+++ ++.+|..|+.|+..++-.. ...+...+..+++.++.+.+++++.+|+..|..
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 235788999999999998 9999999999999988642 356667788999999999999999999999999
Q ss_pred HHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCC
Q 002465 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (919)
Q Consensus 255 l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~ 334 (919)
|+-+.+..++.+.||++.+++++++... +.+++|...|++||.++++ .|--...+.+|+.+++|.|+..|.+.+
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwla~ae----qpi~~~~L~p~l~kliPvLl~~M~Ysd 312 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWLALAE----QPICKEVLQPYLDKLIPVLLSGMVYSD 312 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999764 5678899999999999999 342223467899999999999887554
Q ss_pred CCc--------ccc-------------------------cCC-CCC--ccc---cCCcccchHHHHHHHHHHHcCCCcch
Q 002465 335 DDP--------LWH-------------------------SAE-TED--EDA---GESSNYSVGQECLDRLAIALGGNTIV 375 (919)
Q Consensus 335 ~~~--------~w~-------------------------~~~-~~~--ed~---~~~~~~~~a~~~l~~l~~~~~~~~~~ 375 (919)
++. +.. .++ ++| +|+ .+|+.++..+.+|+.++..+| ++++
T Consensus 313 ~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~-~elL 391 (885)
T KOG2023|consen 313 DDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG-DELL 391 (885)
T ss_pred ccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH-HHHH
Confidence 321 000 000 111 111 134566678889999999998 8999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (919)
|.++|++.+.+.+++|.+|++++.++|++++||.+.+.+|++.++|.++++|.|..|.||..+||+|++++.+.-.+-..
T Consensus 392 ~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~ 471 (885)
T KOG2023|consen 392 PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRD 471 (885)
T ss_pred HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655546
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
.|+..++..+++.+-| ++.+|+++||.++..+.+..+++ +.||+..|++.|...++....+-..-.+.|+|+++.+.|
T Consensus 472 ~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 472 EYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred hhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH
Confidence 8899999999999888 89999999999999999999865 679999999999999876654444557899999999999
Q ss_pred HHHH--HhHhhhhHHHHHHHhhcCC--cccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhH
Q 002465 536 EHFQ--KYYDAVMPFLKAILVNATD--KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611 (919)
Q Consensus 536 ~~~~--~~~~~i~~~l~~~l~~~~~--~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~ 611 (919)
.++. .|++.+||.|.+-|+.-.| ++... .++|++.++.++| ..|.||++++++...++...
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP----LLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~~---------- 614 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDSDKDLFP----LLECLSSIASALG-VGFLPYAQPVYQRCFRILQK---------- 614 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcccchHHH----HHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHH----------
Confidence 8775 5999999999998875333 23333 3789999999888 67889888887766553220
Q ss_pred HHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHH
Q 002465 612 YMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (919)
Q Consensus 612 ~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a 691 (919)
+...++ ..+.++.... . |+.|-| .+
T Consensus 615 ----t~q~~~--------------------~~~~~~~~~~--------------p--------dkdfiI---------~s 639 (885)
T KOG2023|consen 615 ----TLQLLA--------------------KVQQDPTVEA--------------P--------DKDFII---------VS 639 (885)
T ss_pred ----HHHHHH--------------------hccCCccccC--------------C--------CcceEE---------Ee
Confidence 111111 1111111110 1 111222 37
Q ss_pred HHHHHHHHHHhcccccccHH--HHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 002465 692 CNMLCCYADELKEGFFPWID--QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII 769 (919)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~~~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (919)
+++++.++..+|.++.|-+. .+...+..++.|. -++||++++..||++.+++.. .+......++
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~-~peVRQS~FALLGDltk~c~~-------------~v~p~~~~fl 705 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE-VPEVRQSAFALLGDLTKACFE-------------HVIPNLADFL 705 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHH-------------hccchHHHHH
Confidence 78999999999999988774 4788888998886 689999999999999999843 3455555666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhh
Q 002465 770 PALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEE 849 (919)
Q Consensus 770 ~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~ 849 (919)
|.+-..+..+ ...++.+++++++++-.+.|..+. .+++.++..+.-+++...
T Consensus 706 ~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~~~~-~~v~~vl~~L~~iin~~~-------------------------- 757 (885)
T KOG2023|consen 706 PILGANLNPE-NISVCNNAIWAIGEIALKMGLKMK-QYVSPVLEDLITIINRQN-------------------------- 757 (885)
T ss_pred HHHhhcCChh-hchHHHHHHHHHHHHHHHhchhhh-hHHHHHHHHHHHHhcccC--------------------------
Confidence 6655554433 457889999999999999998664 567777777777765311
Q ss_pred hhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 002465 850 NEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAA 917 (919)
Q Consensus 850 ~e~e~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (919)
....+.++.+-.+|.|...+|+.++||++.++..-...++.-.+.++|.+|+-.|+.|+...|.+-
T Consensus 758 --~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 758 --TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV 823 (885)
T ss_pred --chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh
Confidence 344688999999999999999999999999655555555677889999999999999999887653
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-60 Score=496.06 Aligned_cols=784 Identities=20% Similarity=0.304 Sum_probs=617.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCC-------CCccc
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~-------~~~w~ 94 (919)
++.++|+..+|||..+|++||++|+++..+|-..|+..|.++|.+ +.++..|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 456788889999999999999999999988888899999999997 6678899999999999998864 34699
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCh-hHHHHHHHHHHHhhhh
Q 002465 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQY 173 (919)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~~l~~~ 173 (919)
.++.+.++++|+.+++.|.+ +.+..++.++++++.||..++|.+.||+|++.+.....+..+ .+|++++.++|.+|+.
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 688899999999999999999999999999999999887665 5999999999999998
Q ss_pred hhh-hccccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHH
Q 002465 174 IGD-TLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (919)
Q Consensus 174 ~~~-~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a 251 (919)
+.+ .+....+.++..+.++++.. ++..||.+|++||...+++.......+.-+. .+++++++..+.++.+++..+
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern---~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERN---YIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhc---eeeeeeeecccCCcHHHHHHH
Confidence 654 45567788888888888765 5889999999999999987643333332233 789999999999999999999
Q ss_pred HHHHHHHHccCcHHHHHhHHH-HHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcc------------c-chhhhcchh
Q 002465 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER------------A-PGMMRKLPQ 317 (919)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~-li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~------------~-~~~~~~~~~ 317 (919)
+.||+++...+++++.+|+.+ ++...+..+. +.+++|..++++||+++|+.+-. . |........
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999986 7887777664 56899999999999999986211 1 110111123
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHH
Q 002465 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (919)
Q Consensus 318 ~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (919)
-+..++|.|+..|.+.+++ +|+++|++..+|..||..+++..| +.+.|.++|++.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde~----------~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDED----------DDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCCC----------cccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 4557899999998876433 234468999999999999999998 88999999999999999999999999
Q ss_pred HHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCCCCh
Q 002465 398 LIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNP 475 (919)
Q Consensus 398 l~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~ll~~l~~~l~d~~~~ 475 (919)
.+++|++.++... ...+...+.+|.++..+.|++-.||.++.|++|++++.++.... ..+...+++.++..|+| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 9999999998654 56688889999999999999999999999999999998865332 34788999999999998 79
Q ss_pred HHHHHHHHHHHHHHhcCC--------CccccCcHHHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHhhHHHHHHhHh-
Q 002465 476 RVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQN---GKQMVQEGALTALASVADSSQEHFQKYYD- 543 (919)
Q Consensus 476 ~v~~~a~~al~~l~~~~~--------~~~l~~~l~~i~~~L~~~l~~---~~~~v~~~~l~al~~l~~~~~~~~~~~~~- 543 (919)
+|..++||++.+|.+.+. .....||++.|+..|++.-+. .....|..++++|+.++....+...+-..
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999997542 123457999999999998765 34789999999999999998876555443
Q ss_pred ---hhhHHHHHHHhh-----cCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 002465 544 ---AVMPFLKAILVN-----ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (919)
Q Consensus 544 ---~i~~~l~~~l~~-----~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (919)
.++..|.+.++. .+..+...+.+-...+++.+.+.+|+ .+.++.+.+|..+++++++ .....+.+.++-
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 334444444431 11123445667777889999999995 7999999999999998875 222346677888
Q ss_pred HHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHH
Q 002465 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (919)
Q Consensus 616 ~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (919)
+++.++..+|..|..|+|.+.|.+...++.-.+ . ..-..|+.++
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e-------------------~-----------------qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE-------------------Y-----------------QVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH-------------------H-----------------HHHHHHHHHH
Confidence 999999999999999999999999999853111 0 1134688999
Q ss_pred HHHHHHhcccccccHHHHHHHHccccCCc-CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 002465 696 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (919)
Q Consensus 696 ~~l~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 774 (919)
+.+++.+++.|.||...++..|+..++.+ .+.+|+-..++++|++.-+... .+..+++.+++.+-.
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~-------------~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA-------------DFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 3678888999999998876632 356777888876555
Q ss_pred HHh--cCC--------CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhh
Q 002465 775 ALH--KEP--------DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (919)
Q Consensus 775 ~l~--~e~--------~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 844 (919)
.-. .++ -.+.+.+++++...+++..+..-....+...+..++..+..+.. +++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----------e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----------EPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----------Ccc-------
Confidence 432 222 13566777788888887777422234444455555556654321 222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH--HHHhHhhhhcCCCCHHHHHH
Q 002465 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRI 901 (919)
Q Consensus 845 ~~~e~~e~e~~l~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~ 901 (919)
.++.++..+..+||-|+..+|+...+++.. ....++...+++.+..-|..
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~ 845 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDL 845 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHH
Confidence 233578889999999999999877665533 44444433233444444443
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-47 Score=386.03 Aligned_cols=778 Identities=15% Similarity=0.209 Sum_probs=579.2
Q ss_pred CChHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCC-------
Q 002465 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD------- 89 (919)
Q Consensus 19 ~d~~~l~~~l~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~------- 89 (919)
|...++..+.++ .+|||++.|..||++|.++...+...|+..+.+.+.+ +.++..|..|++.|||.+..++
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 344567777765 7999999999999999999987888899999999987 7889999999999999998754
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCCh-hHHHHHHHHHH
Q 002465 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFA 168 (919)
Q Consensus 90 ~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~-~~r~~al~~l~ 168 (919)
...|..++++.++++|...++.|++ +.+...+.+++.++.|+++++|++.||+|+..+........| ..+..++.++|
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 3469999999999999999999997 799999999999999999999999999999999998887665 67888999999
Q ss_pred Hhhhhhhh-hccccHHHH-HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChH
Q 002465 169 QLSQYIGD-TLTPHLKHL-HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (919)
Q Consensus 169 ~l~~~~~~-~~~~~~~~l-~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~ 246 (919)
..|+...+ .+....+.+ +.+....++..++..+|.+|++||..-+.++.+....+. -...++++.+++.+.++.+
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~---erNy~mqvvceatq~~d~e 236 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEE---ERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchh---hhchhheeeehhccCCcHH
Confidence 99987544 444434444 445555566656889999999999986666543333322 2347899999999999999
Q ss_pred HHHHHHHHHHHHHccCcHHHHHhHHHH-HHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhc-------ccchhhhc----
Q 002465 247 TAQEALELLIELAGTEPRFLRRQLVDV-VGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-------RAPGMMRK---- 314 (919)
Q Consensus 247 ~~~~a~~~l~~l~~~~~~~~~~~~~~l-i~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~-------~~~~~~~~---- 314 (919)
+...++.||+++...+++++.+|+... ..++.+.+. +.++++...+.++|+++|+.+- +.|..--.
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mk--s~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMK--SQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 999999999999999999999998754 444444443 4679999999999999999632 11210001
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHH
Q 002465 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (919)
Q Consensus 315 ~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (919)
...-+..++|.++..+...+++ .++++|++..+|..||..+++..| +.+...++.++.+.+++++|+.|
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed----------~~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nr 383 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGED----------YYGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANR 383 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----------ccccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhH
Confidence 1123566899999998875433 233468888899999999999998 66666799999999999999999
Q ss_pred HHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCC
Q 002465 395 HAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDF 472 (919)
Q Consensus 395 ~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~~~~~ll~~l~~~l~d~ 472 (919)
++|.+++|++.++..+ ...++.++.+|.+.....|+.--|+..+.||+|+++.+....+. ..++...+...+..+.|
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D- 462 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD- 462 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-
Confidence 9999999999998765 44578899999999999999999999999999999998765441 23567777788888888
Q ss_pred CChHHHHHHHHHHHHHHhcCC------CccccCcHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHhhHHHHHHhHhh
Q 002465 473 QNPRVQAHAASAVLNFSENCT------PEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDA 544 (919)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~------~~~l~~~l~~i~~~L~~~l~--~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~ 544 (919)
+|.+...++|...++.+++. ++.+.++++.|+..|++.-+ ......|..+++++|+++..+++...+.+..
T Consensus 463 -~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 463 -CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred -cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 78898999999999998764 23466788888888887543 3456789999999999999888766555544
Q ss_pred hhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHh
Q 002465 545 VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (919)
Q Consensus 545 i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (919)
+......-+. +|++..++.+..+. .+ .-+.+.+..+..+..+++..
T Consensus 542 ~~~~~~~kl~---------------~~isv~~q~l~~eD----------~~---------~~~elqSN~~~vl~aiir~~ 587 (858)
T COG5215 542 FYDYTSKKLD---------------ECISVLGQILATED----------QL---------LVEELQSNYIGVLEAIIRTR 587 (858)
T ss_pred HHHHHHHHHH---------------HHHHHhhhhhhhHH----------HH---------HHHHHHHHHHHHHHHHHHhc
Confidence 4444443331 24444432221110 00 00224455666777888889
Q ss_pred cCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcc
Q 002465 625 GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKE 704 (919)
Q Consensus 625 g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~ 704 (919)
|.++.+--..++..+++.++........ +| ....++.++.++++
T Consensus 588 ~~~ie~v~D~lm~Lf~r~les~~~t~~~-------------~d-----------------------V~~aIsal~~sl~e 631 (858)
T COG5215 588 RRDIEDVEDQLMELFIRILESTKPTTAF-------------GD-----------------------VYTAISALSTSLEE 631 (858)
T ss_pred CCCcccHHHHHHHHHHHHHhccCCchhh-------------hH-----------------------HHHHHHHHHHHHHH
Confidence 9999998888999999888653111110 01 23368888999999
Q ss_pred cccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CHH
Q 002465 705 GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP-DTE 783 (919)
Q Consensus 705 ~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~-~~~ 783 (919)
.|..|++.++|-+.+.+.. .+.-|-..|...+|+|.+... .....+.+.++..|++.++++. +++
T Consensus 632 ~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~-------------~df~~y~d~~ms~LvQ~lss~~~~R~ 697 (858)
T COG5215 632 RFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLG-------------TDFNIYADVLMSSLVQCLSSEATHRD 697 (858)
T ss_pred HHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHhcChhhccc
Confidence 9999999999999988864 366788999999999988763 2356777888889999997653 667
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHH
Q 002465 784 ICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEI 863 (919)
Q Consensus 784 ~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~ 863 (919)
+.-+++.+++++.-..|..+ ..+++. +.-+++...+- +..+++..- .++-..++..+.+.
T Consensus 698 lKPaiLSvFgDIAlaiga~F-~~YL~~----im~L~qqas~~------~p~~~~~~~---------~dy~~~~~~~v~~a 757 (858)
T COG5215 698 LKPAILSVFGDIALAIGANF-ESYLDM----IMMLFQQASEL------DPHSDEVYV---------DDYRKNAVQLVNCA 757 (858)
T ss_pred cchHHHHHHHHHHHHHhhhH-HHHHHH----HHHHHHHHhcc------CCCCCceeH---------HHHHHHHHHHHHHH
Confidence 78889999999988887744 234433 33344332211 011111111 11222344444444
Q ss_pred HHHHHHH---ccccchhhHHHHHHhHhhhhc-CCCCHHHHHHHHHHHHHHHhhhhhhhcC
Q 002465 864 LGTLIKT---FKAAFLPFFDELSSYLTPMWG-KDKTAEERRIAICIFDDVAEQCREAALK 919 (919)
Q Consensus 864 l~~l~~~---~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (919)
...+... ..+...||+..+...+..... +..+...-+.|+|.++|+++-.|.+.+|
T Consensus 758 yVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 758 YVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred HHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 3333333 334577888888887775543 3344666679999999999999988765
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-34 Score=310.59 Aligned_cols=687 Identities=15% Similarity=0.202 Sum_probs=467.3
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccC--
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~-- 95 (919)
||.+.+.+++++++.+|++.|+.||+.|+++.| .|. |+..+++++.+ +.+-.+|+.|+++|||.|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 789999999999999999999999999999999 786 57899999876 556778999999999999997 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHH
Q 002465 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (919)
Q Consensus 96 -------l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~ 168 (919)
+.++.+..+|+.++..+.. .+..+|.+...++..|.+.++| ++||.+++.+..++++++.....+|+.++.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 6789999999999999997 5888999999999999999999 899999999999999999999999999999
Q ss_pred Hhhhhhh-----------hhccccHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHHHh-hcCc-chhhHHhhhHHHHH
Q 002465 169 QLSQYIG-----------DTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMM 233 (919)
Q Consensus 169 ~l~~~~~-----------~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~~~~~~p~il 233 (919)
.+++... ..+...++.++..+.+.+..+ ++.+.....++.+..++.+ +|.. ...+.|..++..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 9997532 112235566667777777766 2345556677777776654 2211 12334444444444
Q ss_pred HHHHHHHh----cCChH---------HHHHHHHHHHHHHccCcH--------------HHHHhHHHHHHHHHHhhc----
Q 002465 234 RTLTESLN----NGNEA---------TAQEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAE---- 282 (919)
Q Consensus 234 ~~l~~~l~----~~~~~---------~~~~a~~~l~~l~~~~~~--------------~~~~~~~~li~~ll~~~~---- 282 (919)
.++..-+. .-+++ ..+.|+-.+..+.+.+++ ++..+...+++..++++.
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44432211 11333 456788888888776631 122334455555555442
Q ss_pred CCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHH-HHHHhhcCCCCC-cccccCCCC------CccccCCcc
Q 002465 283 AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIEDD-PLWHSAETE------DEDAGESSN 354 (919)
Q Consensus 283 ~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~-~l~~~l~~~~~~-~~w~~~~~~------~ed~~~~~~ 354 (919)
..-..+.+-..++.++..++.. ..+++...|++..++. .+++.|+-.+++ ..|..+..| |--++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 1234567777888888888773 3456677788877665 567777766544 356654422 111234566
Q ss_pred cchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHhcHH--HHHHhHHH-HHHHH
Q 002465 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMV 423 (919)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~i~~~~~~--~~~~~l~~-l~~~l 423 (919)
..++..++..++..-| +..+|.+++++...+. ..+.+.+.+|+..+|++++...+ .++..++. +++.+
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7778888888888776 7788888888887665 34689999999999999976543 34455554 56788
Q ss_pred HhhCCCCCHhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC--ccccCc
Q 002465 424 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPY 500 (919)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~--~~l~~~ 500 (919)
.+.++++....|..|||.+++++ ..++. ...+.+++....++|.+.+.-.||..|+.||..|+++... +.+.++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 89999999999999999999999 56665 3567888888999988426778999999999999998762 347899
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHH----HhhcCC-c---ccchh-hhHHHHH
Q 002465 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI----LVNATD-K---SNRML-RAKSMEC 571 (919)
Q Consensus 501 l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~----l~~~~~-~---~~~~l-r~~ai~~ 571 (919)
++++++.|+++.+..+.... -.++..++...++.+.||...+...|... +++..+ + +...+ -...+.+
T Consensus 545 vp~~mq~lL~L~ne~End~L---t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDL---TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 99999999999887665433 44566778888888888887777666654 432111 1 11111 1123344
Q ss_pred HHHHHhhhC--hhhhhhhHHHHHHHHHHHhcC-CC--------------CCCCchhHHHHHHHHHHHHHhcCCcccchhh
Q 002465 572 ISLVGMAVG--KDKFRDDAKQVMEVLMSLQGS-QM--------------ETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (919)
Q Consensus 572 l~~l~~~~~--~~~~~~~~~~i~~~l~~l~~~-~~--------------~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~ 634 (919)
+.++..++. ++.+...-+.+++.+.-++.+ .. --...+...+...|.-+..++.+.--.|++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444443 222222222222222211111 00 0001133456666777777777777889999
Q ss_pred hhHHHHHhcccCCCccccCCCCCcccccCCCccc-chh-ccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHH
Q 002465 635 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM-ETI-TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQ 712 (919)
Q Consensus 635 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~ 712 (919)
++|.+-..+.+..+....+ .+. +.+ .+.-+.++-......+.+.|++++..++.++++.+..|++.
T Consensus 702 ~~~~l~N~vt~g~~~~~s~------------~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl 769 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPSLLSN------------PDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL 769 (1010)
T ss_pred HHHHHhhheeeCchhhhcc------------chHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH
Confidence 9999998887653311110 000 000 00000011111223456679999999999999988889999
Q ss_pred HHHHHccccCC-cCChHHHHHHHHh
Q 002465 713 VAPTLVPLLKF-YFHEEVRKAAVSA 736 (919)
Q Consensus 713 ~~~~l~~~l~~-~~~~~vr~~a~~~ 736 (919)
.+...+..+.. ......|..++..
T Consensus 770 f~~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 770 FLELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHHHhccccchHHHHHHHHH
Confidence 98887777665 2234556555543
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-32 Score=298.85 Aligned_cols=793 Identities=15% Similarity=0.200 Sum_probs=555.0
Q ss_pred HHHhcC-CChHHHHHHHHHHHHhhhc-CchHH---HHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHH
Q 002465 28 ISHLMS-TSNEQRSEAELLFNLCKQQ-DPDSL---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS 102 (919)
Q Consensus 28 l~~~~s-~d~~~r~~Ae~~L~~~~~~-~p~~~---~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~ 102 (919)
|..+++ +...+|++--...-++.+. -|+.| +++|++.. +++++..|..|..+|...... +..-......
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-~S~~~~~rE~al~il~s~~~~-----~~~~~~~~~~ 158 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-KSPNPSLRESALLILSSLPET-----FGNTLQPHLD 158 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-cCCCcchhHHHHHHHHhhhhh-----hccccchhHH
Confidence 344444 3344555444444444443 23333 34444432 479999999999999888655 2222233456
Q ss_pred HHHHHHHHHHhhcchHhHHHHHHHHHHHHHhccc-CCCCc---chhHHHHHH----hhcCCChhHHHHHHHHHHHhhhhh
Q 002465 103 SLKSMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGW---PELLPFMFQ----CVSSDSVKLQESAFLIFAQLSQYI 174 (919)
Q Consensus 103 ~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~-~~~~w---~~ll~~l~~----~~~s~~~~~r~~al~~l~~l~~~~ 174 (919)
.++..+.+++.. ++..||..++++++.++...- ....| ..++|.+++ .+..++...-..++.+|..+++..
T Consensus 159 ~l~~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 159 DLLRLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 778888899986 455599999999999998653 12233 345555544 445566666788999999999999
Q ss_pred hhhccccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhhcC-------------------------c---------
Q 002465 175 GDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTS-------------------------S--------- 219 (919)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~-------------------------~--------- 219 (919)
+..+.+++..++.+.++..++. -+..+|..|+.++..++++.+. .
T Consensus 238 pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 238 PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 9999999999999999888876 3678999999999988877320 0
Q ss_pred --ch---hh-----H---------HhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHh
Q 002465 220 --AD---RD-----R---------FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (919)
Q Consensus 220 --~~---~~-----~---------~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~ 280 (919)
+. +. . -...+|.+++.+...+++.++..|..++.+|..+++.+++.+.++++.+++.++..
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 00 00 0 02357788999999999999999999999999999999999999999999999998
Q ss_pred hcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHH
Q 002465 281 AEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 360 (919)
Q Consensus 281 ~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~ 360 (919)
+.+ .++.||..|+.+++.+... -.|.+-+ .+-+.+.|.+...+.+.. .......|..
T Consensus 398 l~D--phprVr~AA~naigQ~std--l~p~iqk---~~~e~l~~aL~~~ld~~~----------------~~rV~ahAa~ 454 (1075)
T KOG2171|consen 398 LND--PHPRVRYAALNAIGQMSTD--LQPEIQK---KHHERLPPALIALLDSTQ----------------NVRVQAHAAA 454 (1075)
T ss_pred cCC--CCHHHHHHHHHHHHhhhhh--hcHHHHH---HHHHhccHHHHHHhcccC----------------chHHHHHHHH
Confidence 864 5799999999999999884 2222211 244556666665543321 1234455777
Q ss_pred HHHHHHHHcCCCcchHHHHH----HHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCC----CH
Q 002465 361 CLDRLAIALGGNTIVPVASE----QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HP 432 (919)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~----~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~----~~ 432 (919)
++..+....+++.+.|++-+ .+..+.++....+|+.++.++++++....+.+.+|++.++|.+...+... ..
T Consensus 455 al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r 534 (1075)
T KOG2171|consen 455 ALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLR 534 (1075)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhH
Confidence 77777777765555555433 44456678899999999999999999999999999999999999988543 35
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh---ccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHH
Q 002465 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA---MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~---l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~ 509 (919)
.+|..++.|++-++...+.+-..++..+++..+... ..+ .+...+.....+..++++..++ .+.||++.+++.++
T Consensus 535 ~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~-~dd~~~sy~~~~warmc~ilg~-~F~p~L~~Vmppl~ 612 (1075)
T KOG2171|consen 535 ELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQD-DDDPLRSYMIAFWARMCRILGD-DFAPFLPVVMPPLL 612 (1075)
T ss_pred HHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchh-hccccHHHHHHHHHHHHHHhch-hhHhHHHHHhHHHH
Confidence 678888999999998887433267788888888877 444 4566788888999999999994 58899999999998
Q ss_pred HHhhcC------------------------------------ChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHH
Q 002465 510 VLLQNG------------------------------------KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 510 ~~l~~~------------------------------------~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (919)
...+.. ...-|+.++.+++.++...+..|.||..++++.....+
T Consensus 613 ~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l 692 (1075)
T KOG2171|consen 613 KTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLL 692 (1075)
T ss_pred HhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 865421 12357889999999999999999999999999544444
Q ss_pred hhcCCcccchhhhHHHHHHHHHHhhhC------hhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 002465 554 VNATDKSNRMLRAKSMECISLVGMAVG------KDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (919)
Q Consensus 554 ~~~~~~~~~~lr~~ai~~l~~l~~~~~------~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 627 (919)
.-. -+..+|..+.+++..+.++.- +....+....+.+.++..... +.+..+...++++|+...+.+|..
T Consensus 693 ~f~---fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~--E~e~~vl~~vl~~f~~~i~~~G~~ 767 (1075)
T KOG2171|consen 693 KFY---FHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEE--EPETEVLSEILESFAECIEVMGDN 767 (1075)
T ss_pred Hhh---hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHhcCcc
Confidence 322 344589999999998876543 222223344444444443332 222336678888999999999954
Q ss_pred --cccchhhhhHHHHHhccc----CCCccccCCCCCccccc-CCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHH
Q 002465 628 --FLPYMSVVMPPLLQSAQL----KPDVTITSADSDNEIED-SDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYAD 700 (919)
Q Consensus 628 --~~~~l~~i~~~ll~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~ 700 (919)
+.+++..++-.+++.+.. ..+.. .++++++++ +++++.. +. ...+. ..+.+++..++.
T Consensus 768 ~L~~~~~~~~~~~~~~~~l~~~~~~~~r~---~~~~eed~d~~eee~~~-----e~-----d~~ll--~~i~~i~~~l~k 832 (1075)
T KOG2171|consen 768 CLNEDGLEALLGGLLAQLLQHFKRMQDRQ---EEDDEEDDDIEEEEDLD-----EQ-----DAYLL--DAISDILAALAK 832 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhHHHHHHh-----hh-----hHHHH--HHHHHHHHHHHH
Confidence 335655555555544421 11111 110111000 0111110 00 00111 136678999999
Q ss_pred HhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 002465 701 ELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780 (919)
Q Consensus 701 ~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~ 780 (919)
..++.|.|+++.+.+.+.+.+....... |+.|..+++.++..++.+ ..++...++|.+++.+. +.
T Consensus 833 ~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~a-------------~~~~~~~~~p~~~~~~~-d~ 897 (1075)
T KOG2171|consen 833 ALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGEA-------------SAKYKERFLPLVLEALQ-DS 897 (1075)
T ss_pred HccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhcccc-------------cchHHHHHHHHHHHHcC-CC
Confidence 9999999999999999999988754444 999999999999876322 23455667788887765 45
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHH
Q 002465 781 DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQV 860 (919)
Q Consensus 781 ~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~ 860 (919)
+++|+.++..+++-+-+..|.. -...+.+.+..+..+++....|. |+-....+++
T Consensus 898 ~pEVRqaAsYGiGvlaq~~g~~-y~~v~~~~l~~L~~~iq~~~ar~------------------------Ee~~~ateNa 952 (1075)
T KOG2171|consen 898 DPEVRQAAAYGMGVLAQFGGED-YAPVCSEALPLLVQVLQPPLART------------------------EENRRATENA 952 (1075)
T ss_pred CHHHHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHcChhhhh------------------------HHHhHHHHHH
Confidence 9999999999999998777764 23456666777777766544331 1123467789
Q ss_pred HHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhhhh
Q 002465 861 GEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCR 914 (919)
Q Consensus 861 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (919)
+.+++.++++++...- .+..+|....+|-...+..+-...+..++++++...
T Consensus 953 ~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~ 1004 (1075)
T KOG2171|consen 953 IGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNH 1004 (1075)
T ss_pred HHHHHHHHHhCCccCc--HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCC
Confidence 9999999988876554 777888888887666667777788888999888654
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=274.37 Aligned_cols=703 Identities=15% Similarity=0.178 Sum_probs=468.2
Q ss_pred HHHHHHHHHHcc--CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh
Q 002465 56 SLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (919)
Q Consensus 56 ~~~~~l~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~ 133 (919)
..+..++++|++ ++++.+|..+-..+.+.-.. |+..+++- .++..+++ .+..+|..++-.+..=.+
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~----------pdfnnYL~-~IL~~~~~-~d~~~Rs~aGLlLKNnvr 77 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF----------PDFNNYLI-YILIRAKS-EDVPTRSLAGLLLKNNVR 77 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc----------cchhceee-EEEecccc-cchhHHHHhhhhHhcccc
Confidence 345677777775 78899999988888776432 11112211 22333343 245556665555543333
Q ss_pred cccCCCCcchhHHH----HHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002465 134 NILPENGWPELLPF----MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (919)
Q Consensus 134 ~~~~~~~w~~ll~~----l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (919)
.-++ ..-++...+ +++.+.++++.+|...-.++..|+...+ ..++++++|.+.+.|.++ +......|+.+|
T Consensus 78 ~~~~-~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~wpelLp~L~~~L~s~-d~n~~EgA~~AL 152 (885)
T KOG2023|consen 78 GHYN-SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG---LQHWPELLPQLCELLDSP-DYNTCEGAFGAL 152 (885)
T ss_pred cccc-CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc---cccchhHHHHHHHHhcCC-cccccchhHHHH
Confidence 2111 011233333 3344455666666655555565554432 237899999999999997 888899999999
Q ss_pred HHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChh
Q 002465 210 INFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEG 289 (919)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~ 289 (919)
..+++......+.+....-+..++..+.+..+++++..|..|+.|+..++-..+..+.-+++.+++.++.+.. +.+++
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalan--D~~~e 230 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALAN--DEDPE 230 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHcc--CCCHH
Confidence 9999864321122111222334455555556688999999999999999998888898999999999998873 56899
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHH-
Q 002465 290 TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA- 368 (919)
Q Consensus 290 vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~- 368 (919)
||.+.+..+..+.+. .| .+..+++..++..++....+.++.- .--|.+....+++.
T Consensus 231 VRk~vC~alv~Llev---r~---dkl~phl~~IveyML~~tqd~dE~V-----------------ALEACEFwla~aeqp 287 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEV---RP---DKLVPHLDNIVEYMLQRTQDVDENV-----------------ALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHHh---cH---HhcccchHHHHHHHHHHccCcchhH-----------------HHHHHHHHHHHhcCc
Confidence 999999999999885 33 3456788888888777766554321 00012222222211
Q ss_pred cCCC---cchHHHHHHHHHh----------hC------------------------------------C----------C
Q 002465 369 LGGN---TIVPVASEQLPAY----------LA------------------------------------A----------P 389 (919)
Q Consensus 369 ~~~~---~~~~~l~~~l~~~----------l~------------------------------------~----------~ 389 (919)
..++ ..++.++|.+.+. +. + .
T Consensus 288 i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~ 367 (885)
T KOG2023|consen 288 ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS 367 (885)
T ss_pred CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence 0000 1111122222110 00 0 1
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 002465 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l 469 (919)
+|+.|.++..++..+++..++ +.++.++|.+...|..+++.||+++..++|.+++.+-..+ .+|++.++|.+++.|
T Consensus 368 dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L 443 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLL 443 (885)
T ss_pred cccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHh
Confidence 399999999999999998887 6788899999999999999999999999999999988888 789999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHH
Q 002465 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (919)
Q Consensus 470 ~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l 549 (919)
.| ..+-||..+||+|+++....-.+.-..|+.+++..|++.+-+++..|++.++++++++-..+++++.||++.|+..|
T Consensus 444 ~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l 522 (885)
T KOG2023|consen 444 DD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQL 522 (885)
T ss_pred cc-CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 99 89999999999999998876544445789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhh-hHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCc
Q 002465 550 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (919)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~-~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 628 (919)
...+++...++... ..+++|+++.++|...-.| |.+-+++.+++-|+. ...+|.-.--++.|++.++.++|.+|
T Consensus 523 ~~af~kYQ~KNLlI----LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~-lsd~DKdLfPLLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLI----LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL-LSDSDKDLFPLLECLSSIASALGVGF 597 (885)
T ss_pred HHHHHHHhhcceeh----HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh-cCcccchHHHHHHHHHHHHHHHhccc
Confidence 99987765444332 4789999999998443333 788899999886663 33334434467889999999999999
Q ss_pred ccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccc
Q 002465 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708 (919)
Q Consensus 629 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p 708 (919)
.||.+.+...++..++. ++..++..... |
T Consensus 598 ~P~~~~Vy~Rc~~il~~------------------------------------------------t~q~~~~~~~~---~ 626 (885)
T KOG2023|consen 598 LPYAQPVYQRCFRILQK------------------------------------------------TLQLLAKVQQD---P 626 (885)
T ss_pred cccCHHHHHHHHHHHHH------------------------------------------------HHHHHHhccCC---c
Confidence 99999998888776642 11111111110 0
Q ss_pred cHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 002465 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASM 788 (919)
Q Consensus 709 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~ 788 (919)
- .. ..+.+.--.++..+.-|.+.+....+ + +..- ..+...+++++.+ .-++|+..+
T Consensus 627 ~-----------~~-~pdkdfiI~sLDL~SGLaegLg~~ie---------~-Lva~-snl~~lll~C~~D-~~peVRQS~ 682 (885)
T KOG2023|consen 627 T-----------VE-APDKDFIIVSLDLLSGLAEGLGSHIE---------P-LVAQ-SNLLDLLLQCLQD-EVPEVRQSA 682 (885)
T ss_pred c-----------cc-CCCcceEEEeHHHHhHHHHHhhhchH---------H-Hhhh-ccHHHHHHHHhcc-CChHHHHHH
Confidence 0 00 01122233344445555544422110 0 0000 1144455556544 478999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 002465 789 LDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLI 868 (919)
Q Consensus 789 ~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~ 868 (919)
+.-|+.+.+.|. +++...+..+...+...+. .+ --.+-.+++-.+|.++
T Consensus 683 FALLGDltk~c~-----~~v~p~~~~fl~~lg~Nl~-----------~~---------------~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 683 FALLGDLTKACF-----EHVIPNLADFLPILGANLN-----------PE---------------NISVCNNAIWAIGEIA 731 (885)
T ss_pred HHHHHHHHHHHH-----HhccchHHHHHHHHhhcCC-----------hh---------------hchHHHHHHHHHHHHH
Confidence 999999998873 3444444444445432111 00 0124567899999999
Q ss_pred HHccccchhhHHHHHHhHhhhhc-CCCCHHHHHHHHHHHHHHHhhhhhh
Q 002465 869 KTFKAAFLPFFDELSSYLTPMWG-KDKTAEERRIAICIFDDVAEQCREA 916 (919)
Q Consensus 869 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (919)
-..|...-+++..++..+...++ +..+...-...--+++++--++|+.
T Consensus 732 ~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 732 LKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 99999988998886555555443 2222333333444556655555543
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-27 Score=246.89 Aligned_cols=664 Identities=18% Similarity=0.257 Sum_probs=440.6
Q ss_pred HHHHHHcCCChHHHHHHHHHhcCCC---hHHHHHHHHHHHH-hhhcCchHHHHHHHHHH---------------c--cCC
Q 002465 11 SQLAVILGPDSAPFETLISHLMSTS---NEQRSEAELLFNL-CKQQDPDSLTLKLAHLL---------------Q--RSP 69 (919)
Q Consensus 11 ~~~~~~~~~d~~~l~~~l~~~~s~d---~~~r~~Ae~~L~~-~~~~~p~~~~~~l~~il---------------~--~~~ 69 (919)
.++.+.-..|..+|..+|...+..+ ...|..|=-.|+. +..++|+--..+.-..+ + .++
T Consensus 23 ~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ 102 (859)
T KOG1241|consen 23 KQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSP 102 (859)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 3444444577777777776655432 3457666666653 44445532111111111 1 134
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchhHH
Q 002465 70 HPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLP 146 (919)
Q Consensus 70 ~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~---~~w~~ll~ 146 (919)
.|..+..|+.++...-... +|...-..+...+......++...+|...++++|.+.....|+ ...++++-
T Consensus 103 ep~~~s~Aaq~va~IA~~E-------lP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIE-------LPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred CCCccchHHHHHHHHHHhh-------CchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 4555555555554443332 2333333344455566666666679999999999998876553 24567777
Q ss_pred HHHHhhcC--CChhHHHHHHHHHHHhhhhhhhhccc--cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchh
Q 002465 147 FMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (919)
Q Consensus 147 ~l~~~~~s--~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (919)
.+.+..+. ++..+|.+|+.+|..-.+.....|.. ..+-+++.....-+.+ +.+++.+|+.||..++.-. .
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~Ly-----Y 249 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLY-----Y 249 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHH-----H
Confidence 77777765 35689999999998887776544432 3456777777777887 9999999999999988642 2
Q ss_pred hHHhhhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHccC---------------c----HHHHHhHHHHHHHHHHhhc
Q 002465 223 DRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTE---------------P----RFLRRQLVDVVGSMLQIAE 282 (919)
Q Consensus 223 ~~~~~~~p-~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---------------~----~~~~~~~~~li~~ll~~~~ 282 (919)
+....++. .++.+....+.++++++...+++.+..+++.. + .+...-++.+++.++..+.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 22222222 24444455667889999999999998666422 1 1222334567777777764
Q ss_pred CC-----CcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccch
Q 002465 283 AE-----SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (919)
Q Consensus 283 ~~-----~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~ 357 (919)
.. ++++.....|-.+|.-+++..+. ..++.++|-+ .+.-..|+|. .+.+
T Consensus 330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---------~Iv~~Vl~Fi----ee~i~~pdwr-------------~rea 383 (859)
T KOG1241|consen 330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---------DIVPHVLPFI----EENIQNPDWR-------------NREA 383 (859)
T ss_pred hCCCCcccccCcHHHHHHHHHHHHHHHhcc---------cchhhhHHHH----HHhcCCcchh-------------hhhH
Confidence 32 23344555665566655553111 1223333333 2222334453 3556
Q ss_pred HHHHHHHHHHHcCCC---cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHH--HHhHHHHHHHHHhhCCCCCH
Q 002465 358 GQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM--VKNLEQVLSMVLNSFRDPHP 432 (919)
Q Consensus 358 a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~--~~~l~~l~~~l~~~l~d~~~ 432 (919)
+..+++.+-..-.++ .+.+..+|.+...+.++.-.+|.++.+.||.+++.+++.. ..++..+++.+..+++| +|
T Consensus 384 avmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-eP 462 (859)
T KOG1241|consen 384 AVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EP 462 (859)
T ss_pred HHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-Cc
Confidence 666666554332222 3444556667777778888888999999999999998744 36788899999999976 69
Q ss_pred hHHHHHHHHHHHhhhhhchhH--------HhhhhhhhHHHHHhhcc--CCCChHHHHHHHHHHHHHHhcCCC--------
Q 002465 433 RVRWAAINAIGQLSTDLGPDL--------QNQFHPQVLPALAGAMD--DFQNPRVQAHAASAVLNFSENCTP-------- 494 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~--------~~~~~~~ll~~l~~~l~--d~~~~~v~~~a~~al~~l~~~~~~-------- 494 (919)
+|-..+||++..+++...... ..+++..++..|++.-+ |......|.+|..+|..++.+.+.
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999997664321 13466677777766433 213356778888887776654431
Q ss_pred ---------------------------------------------ccccCcHHHHHHHHHHHhhc-CChhHHHHHHHHHH
Q 002465 495 ---------------------------------------------EILTPYLDGIVSKLLVLLQN-GKQMVQEGALTALA 528 (919)
Q Consensus 495 ---------------------------------------------~~l~~~l~~i~~~L~~~l~~-~~~~v~~~~l~al~ 528 (919)
..+.++.+.+|..+++.+++ .+..+.+.++.+++
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 12334455555556666655 23568999999999
Q ss_pred HHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCc
Q 002465 529 SVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP 608 (919)
Q Consensus 529 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~ 608 (919)
+++..+|..|..|++.+.|.|..-|++.. ...+...++...|-++++++ +.|.||.+.++..+++-+.+. ..++.
T Consensus 623 tl~~~Lg~~F~kym~~f~pyL~~gL~n~~---e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~-~~hR~ 697 (859)
T KOG1241|consen 623 TLAESLGKGFAKYMPAFKPYLLMGLSNFQ---EYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSP-NLHRN 697 (859)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCc-ccccc
Confidence 99999999999999999999999986543 34466778888899999999 779999999999999855422 34566
Q ss_pred hhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHH
Q 002465 609 TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEK 688 (919)
Q Consensus 609 ~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k 688 (919)
++..++++|+.|+-.+|.+|.||+..+++.+-+.-+..++.. +++..+++ .+-|
T Consensus 698 vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~-------------~~~~~dYv-------------d~LR 751 (859)
T KOG1241|consen 698 VKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPA-------------DDSMVDYV-------------DELR 751 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC-------------cccHHHHH-------------HHHH
Confidence 899999999999999999999999999999887764322210 22233322 2345
Q ss_pred HHHHHHHHHHHHHhcc-----cccccHHHHHHHHccccCCcC-ChHHHHHHHHhHHHHHHHHH
Q 002465 689 ATACNMLCCYADELKE-----GFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAK 745 (919)
Q Consensus 689 ~~a~~~l~~l~~~~~~-----~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~ 745 (919)
..++++-..++..++. .+.||++.+++.+-+.-.+.. ++.+-.+|+..+|+|+..+.
T Consensus 752 e~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 752 EGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFG 814 (859)
T ss_pred HHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcc
Confidence 6677777777777763 467999999999887766543 46788899999999998763
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.8e-27 Score=247.64 Aligned_cols=692 Identities=16% Similarity=0.209 Sum_probs=452.4
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhhccCCCCccc---
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~R~~a~i~L~~~i~~~~~~~w~--- 94 (919)
.+.+.+.+.|....+||+++|+.||+.|+++.. ++ +|...+++++.++ .++.+|..|++.+||.++++ |.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~-~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~ 75 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQ-NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAE 75 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CC-CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCC
Confidence 356788999999999999999999999999988 44 4667788888874 48999999999999999987 64
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002465 95 ----RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (919)
Q Consensus 95 ----~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (919)
.+.++.++.||..++..+.+ ....++.++.++++.++++++| ..||.|+|.+...++++|-++-.+.+..-..+
T Consensus 76 ~~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsi 153 (960)
T KOG1992|consen 76 DSPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSI 153 (960)
T ss_pred CCccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 46788999999999999987 5788999999999999999999 79999999999999999887777777777777
Q ss_pred hhhhhhhcc---------ccHH----HHHHHHHHh---hCCC-CChH---HHHHHHHHHHHHHHhhcCcchhhHHhhhHH
Q 002465 171 SQYIGDTLT---------PHLK----HLHAVFLNC---LTNS-NNPD---VKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (919)
Q Consensus 171 ~~~~~~~~~---------~~~~----~l~~~l~~~---l~~~-~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p 230 (919)
.+.....++ -.++ .+..++.+. .+.. .+.. +-...+..+..+...+.-.+.++.|.+++.
T Consensus 154 Fkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~ 233 (960)
T KOG1992|consen 154 FKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK 233 (960)
T ss_pred HHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH
Confidence 765433221 1222 222222222 1111 1211 112222222223333322334567778888
Q ss_pred HHHHHHHHHHhcCCh-------------HHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCc---ChhHHHHH
Q 002465 231 LMMRTLTESLNNGNE-------------ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL---EEGTRHLA 294 (919)
Q Consensus 231 ~il~~l~~~l~~~~~-------------~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~---~~~vr~~a 294 (919)
.+|..+.+.+..++| ..+...|+.+.-.+..+.+.|.+++++++...+.++..... -+.....|
T Consensus 234 ~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~A 313 (960)
T KOG1992|consen 234 TWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKA 313 (960)
T ss_pred HHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 888888877763222 35667899999999999999999999999888877643322 24467788
Q ss_pred HHHHHHHHhhhcccchhhhcchhhHHHHHHHH-HHhhcCCCCCcccccCCC------CCccccCCcccchHHHHHHHHHH
Q 002465 295 IEFVITLAEARERAPGMMRKLPQFINRLFAIL-MSMLLDIEDDPLWHSAET------EDEDAGESSNYSVGQECLDRLAI 367 (919)
Q Consensus 295 l~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l-~~~l~~~~~~~~w~~~~~------~~ed~~~~~~~~~a~~~l~~l~~ 367 (919)
+++|..+++...+ ++.. ...+.+..+...+ ++.+.-..+|.+..+++. +-|..+.+..+++|.+.++.++.
T Consensus 314 l~FLt~V~~r~~y-~~~F-~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~ 391 (960)
T KOG1992|consen 314 LQFLTSVSRRPHY-AELF-EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCK 391 (960)
T ss_pred HHHHHHHHhhhhh-Hhhh-cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHH
Confidence 9999999983211 1011 0122333333321 222221112222221110 11223345567889999999999
Q ss_pred HcCCCcchHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHhcHH------------HHHHhH-HHHHHHHHhhCC
Q 002465 368 ALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNL-EQVLSMVLNSFR 428 (919)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~~------------~~~~~l-~~l~~~l~~~l~ 428 (919)
.+. ..+.+.+...+...++ +.||+.+..++..+.+++..... ....++ ..++|.+...=.
T Consensus 392 ~fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v 470 (960)
T KOG1992|consen 392 NFE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV 470 (960)
T ss_pred Hhc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence 985 5666766666666665 66899999999999988864221 111222 234444433223
Q ss_pred CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhc--------CCCccccCc
Q 002465 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN--------CTPEILTPY 500 (919)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~--------~~~~~l~~~ 500 (919)
.++|.++..++.-+-.+-..++ ..++-.++|.++..|.. +...|...|+.++..+... +++..+.||
T Consensus 471 n~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~ 545 (960)
T KOG1992|consen 471 NEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPF 545 (960)
T ss_pred ccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchH
Confidence 5688899888765544433333 56788999999999998 7788899999999988743 234567889
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh-cCCcccchhhhHHHHHHHHHHhhh
Q 002465 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMECISLVGMAV 579 (919)
Q Consensus 501 l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~lr~~ai~~l~~l~~~~ 579 (919)
...++..|+..+..+...--+....++-.+....++...|+.+.+++.|-+++.. ..++.....-...+|+++.+.+..
T Consensus 546 ~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 546 VEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT 625 (960)
T ss_pred HHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999998887776666677888888888888888889999999998888654 234444445556788888887765
Q ss_pred Ch---hhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHh--cccCCCccccCC
Q 002465 580 GK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS--AQLKPDVTITSA 654 (919)
Q Consensus 580 ~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~--~~~~~~~~~~~~ 654 (919)
++ .....+-..+++.+..++.+. -.+...|++..++.+....+....+..-.++|.+++- |....+
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~eD---I~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gN------ 696 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSED---IQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGN------ 696 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCC------
Confidence 43 334556666676665544321 1235678888888888877765444444445554431 211100
Q ss_pred CCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHccccCCcCChHHHHH
Q 002465 655 DSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYFHEEVRKA 732 (919)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~l~~~~~~~vr~~ 732 (919)
+ -+.++++..+...-+..+. ..++.++..+-+++... .--..
T Consensus 697 ------------------------------i---palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk---a~Dh~ 740 (960)
T KOG1992|consen 697 ------------------------------I---PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK---ANDHH 740 (960)
T ss_pred ------------------------------c---HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc---ccchh
Confidence 0 1234455555554444343 34555555555555432 22234
Q ss_pred HHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 002465 733 AVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTE 783 (919)
Q Consensus 733 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~ 783 (919)
++..|..++... .+....+....++..+++++++.+.+.
T Consensus 741 GF~LLn~i~~~~------------~~~~~~py~k~i~~llf~RlqnskT~k 779 (960)
T KOG1992|consen 741 GFYLLNTIIESI------------PPNELAPYMKQIFGLLFQRLQNSKTEK 779 (960)
T ss_pred HHHHHHHHHhcC------------CHhhhhHHHHHHHHHHHHHHhccCcHH
Confidence 566666666554 222234455666677777777655444
No 10
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=3.1e-24 Score=230.18 Aligned_cols=702 Identities=17% Similarity=0.224 Sum_probs=444.7
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhhccCCCCcccC--
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~R~~a~i~L~~~i~~~~~~~w~~-- 95 (919)
++.+.+..+|.+++|+|+++|.+||..|+++.. +++|-..|..+..+. ..-..||.|+++|++.+.++ |..
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~ 74 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNF 74 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChH
Confidence 356788999999999999999999999999987 445778999998874 56789999999999999997 653
Q ss_pred --------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHH
Q 002465 96 --------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIF 167 (919)
Q Consensus 96 --------l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l 167 (919)
-+.+.+..||+.+++.+- +++..+|+.++.+++.|+..++| +.||+++|.+..++++++.+...+|+.+|
T Consensus 75 E~fr~~~~~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL 152 (1005)
T KOG2274|consen 75 EAFRYPLIVSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVL 152 (1005)
T ss_pred hhccCCCcccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHH
Confidence 356788999999999998 47999999999999999999999 79999999999999999999999999999
Q ss_pred HHhhhhhhhh-c----cccHHHHHHHHHHhhCCCCChHHHHHHH--HHHHHHHHhhcCcc------hhhHHhhhHHHHHH
Q 002465 168 AQLSQYIGDT-L----TPHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLTSSA------DRDRFQDLLPLMMR 234 (919)
Q Consensus 168 ~~l~~~~~~~-~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~l~~~~~~~~------~~~~~~~~~p~il~ 234 (919)
..+....... . ...++.+.-.+ ...... +...|..+. +.+..+...+.... .+..+...++.+++
T Consensus 153 ~el~~ev~~ee~~~~~~~~l~~m~~~f-~~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 153 AELSDEVDVEEMFFVGPVSLAEMYRIF-ALTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhh-hhcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998765321 1 11233333322 222222 333443333 44444443332111 12233455666666
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcC--------------------CCcCh---
Q 002465 235 TLTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLEE--- 288 (919)
Q Consensus 235 ~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~--------------------~~~~~--- 288 (919)
.+.+.++-. +...+.+.+.++..+.+..|..+.+++...++..++.... .+.++
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~ 310 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEK 310 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhh
Confidence 666665533 3457888899999999999988888777666555543310 01111
Q ss_pred ---hHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCC-CcccccCCC---CCccccCCcccchHHHH
Q 002465 289 ---GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED-DPLWHSAET---EDEDAGESSNYSVGQEC 361 (919)
Q Consensus 289 ---~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~-~~~w~~~~~---~~ed~~~~~~~~~a~~~ 361 (919)
..-...++|+..++...... +..+.-+..+++.+...+.-.++ -..|..+.. .+|+++ ...+..+...
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~~----~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~ 385 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFLS----KTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDL 385 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHH
Confidence 12345678888887742111 11122233334444333321111 112433221 122222 2233344455
Q ss_pred HHHHHHHcCCCcchHHHHHH----HHH-----hh-CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC-CCC
Q 002465 362 LDRLAIALGGNTIVPVASEQ----LPA-----YL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDP 430 (919)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~----l~~-----~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-~d~ 430 (919)
+-.+...+|...+.| +.+. +.. .+ +..+|+...+.+.+......+. .....+..++..+..++ ...
T Consensus 386 ~~~v~~~f~~~~i~~-i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e 462 (1005)
T KOG2274|consen 386 LLEVITTFGNEGINP-IQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQE 462 (1005)
T ss_pred HHHHHHhccchhhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhccccc
Confidence 556666666443333 3332 221 12 2346888888888877766432 22355666666666666 455
Q ss_pred CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHH
Q 002465 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (919)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~ 510 (919)
.|..-..++++++.++..+... .+....++...+..+.-...+.+|.+|+.++..++ ++..+.+++|.+++.|.+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHH
Confidence 7777779999999998874332 24566667776766655356778888888877776 667788999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHH
Q 002465 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (919)
Q Consensus 511 ~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~ 590 (919)
+....+..+....+.+++.+++.-++.-...-..+.|.+..++.+..++. .+.+.+.+++-.+.+.. ....|+...
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~--~~~g~m~e~ 613 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIA--ANYGPMQER 613 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHH--HhhcchHHH
Confidence 99888888888888899888876554323334567788888876654332 45556677776666532 456788888
Q ss_pred HHHHHHHHhcCCC-CCCCchhHHHHHHHHHHHHHhcCCcc-cchhhhhHHHHHhcccCCCccccCCCCCcccccCCCccc
Q 002465 591 VMEVLMSLQGSQM-ETDDPTTSYMLQAWARLCKCLGQDFL-PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668 (919)
Q Consensus 591 i~~~l~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (919)
.++.++++....- .........++..+..+.+..+..+. .++...+|.+.++.-.. + |.+
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs------d----------D~~-- 675 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS------D----------DHE-- 675 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec------C----------ChH--
Confidence 8888888654321 11123555667777777777666644 34466777777765221 1 111
Q ss_pred chhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccc-----ccc--HHHHHHHHccccCCcCChHHHHHHHHhHHHHH
Q 002465 669 ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF-----FPW--IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (919)
Q Consensus 669 ~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~-----~p~--~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 741 (919)
+-..|-++|..++....+.+ .|- +-.+++++..+++ ++....++.-.|.++
T Consensus 676 ------------------tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV 733 (1005)
T KOG2274|consen 676 ------------------TLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLV 733 (1005)
T ss_pred ------------------HHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHH
Confidence 12345567777776633222 222 2245555555564 344445555778887
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002465 742 RSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (919)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i 796 (919)
...... .+..+.+.++.++..++..+..-....+..+.+..++.++
T Consensus 734 ~tLit~---------a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 734 LTLITH---------ASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHH---------HHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 665432 1233555566667666667765556667777666666544
No 11
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-23 Score=221.33 Aligned_cols=700 Identities=14% Similarity=0.170 Sum_probs=418.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCccc-----CCC
Q 002465 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (919)
Q Consensus 24 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~-----~l~ 97 (919)
+.++|++..|+|..++|.||++|+++++ +|+.| +.|..+..+ +.+-.+|.+|++.+||-+.+. |+ .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4678999999999999999999999999 89865 778887776 556889999999999999986 65 489
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC----ChhHHHHHHHHHHHhhhh
Q 002465 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (919)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~----~~~~r~~al~~l~~l~~~ 173 (919)
++.+..||..++.... |+++.+..+.|.+++.+|+.++| ..||+++|.+.+.+++. |.......+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 57999999999999999999999 79999999999988876 777777788888888776
Q ss_pred hhhh--------ccccHHHHHHHHHHhhCCC------------C------ChHHHHHHHHHHHHHHHh-hcCcchhhHHh
Q 002465 174 IGDT--------LTPHLKHLHAVFLNCLTNS------------N------NPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (919)
Q Consensus 174 ~~~~--------~~~~~~~l~~~l~~~l~~~------------~------~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~ 226 (919)
++.. |....+.+++++.-.+-++ . ..++-..+++++..++-+ +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 5421 2222333333222221111 0 112223355556555433 22222222 33
Q ss_pred hhHHHHHHHHHH----HHhcC----ChHHHHHH----HHHHHHHHccCcHHHHH--hHHHHHHHHHHhhcCC--------
Q 002465 227 DLLPLMMRTLTE----SLNNG----NEATAQEA----LELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAE-------- 284 (919)
Q Consensus 227 ~~~p~il~~l~~----~l~~~----~~~~~~~a----~~~l~~l~~~~~~~~~~--~~~~li~~ll~~~~~~-------- 284 (919)
+-++.+++.=.. .+... ..+...+. ...+..+.+..|-.|.. ..+..+++.+.....+
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 333344433111 11111 11112222 34445555655544443 2333333333322111
Q ss_pred ---CcChhHHHHHHHHHHHHHhhhcccc---------------hhhhc------chhhHHHHHHHHHHhhc--CCCCCcc
Q 002465 285 ---SLEEGTRHLAIEFVITLAEARERAP---------------GMMRK------LPQFINRLFAILMSMLL--DIEDDPL 338 (919)
Q Consensus 285 ---~~~~~vr~~al~~l~~l~~~~~~~~---------------~~~~~------~~~~~~~li~~l~~~l~--~~~~~~~ 338 (919)
..-++....++..+..+...+.+.+ ....+ ..+.+..+...++.+.. ..++-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1112233344444443222211111 00000 11234445555555432 3344567
Q ss_pred cccCCCC---Ccc--ccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHH
Q 002465 339 WHSAETE---DED--AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (919)
Q Consensus 339 w~~~~~~---~ed--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~i 404 (919)
|..+.+. +++ +-+...+..|...+..+-..++ +.+.|.++.++.+..+.. ..-.+.|...++|..
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 7765542 111 2233456667777777777776 677888888886654422 123556666677766
Q ss_pred HHhcHH--HHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHH
Q 002465 405 AEGCAK--VMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 405 ~~~~~~--~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a 481 (919)
+....+ .+...+. .++|.+- --.+....+|+..+|.+|+.+..- ...+..+-+...+++.++|..+..||-.+
T Consensus 472 a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq---~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt 547 (978)
T KOG1993|consen 472 AYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQ---QKLELKPLLYCAFLNLLQDQNDLVVRLTT 547 (978)
T ss_pred HHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhhee---chHhHHHHHHHHHHHhcCccccceeehHH
Confidence 655543 1222222 2233322 112234457899999999988632 21445566777888999994478899999
Q ss_pred HHHHHHHHhc--CCCccccCcHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCC
Q 002465 482 ASAVLNFSEN--CTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (919)
Q Consensus 482 ~~al~~l~~~--~~~~~l~~~l~~i~~~L~~~l~~~~-~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 558 (919)
+.++...++. +.++.+.||++.+...++++++.-. -..|..++..++.++...++...||...++..+..+|....
T Consensus 548 ~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~- 626 (978)
T KOG1993|consen 548 ARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE- 626 (978)
T ss_pred HHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-
Confidence 9999999985 4567788999999999999887643 56788999999999999999999999999999999997543
Q ss_pred cccchhhhHHHHHHHHHHhhhChhh--hhhhHHHHHHHHHHHhcCCCCCCCc-hhHHHHHHHHHHHHHhcCCcccchhhh
Q 002465 559 KSNRMLRAKSMECISLVGMAVGKDK--FRDDAKQVMEVLMSLQGSQMETDDP-TTSYMLQAWARLCKCLGQDFLPYMSVV 635 (919)
Q Consensus 559 ~~~~~lr~~ai~~l~~l~~~~~~~~--~~~~~~~i~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~l~~i 635 (919)
+...+|.+.+.++..+..++|.+. +.|++-.+++.-..... .+.. +.+-.+..|....... ..+.|-+-.+
T Consensus 627 -~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~s----P~hv~L~EDgmeLW~~~L~n~-~~l~p~ll~L 700 (978)
T KOG1993|consen 627 -EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSS----PEHVYLLEDGMELWLTTLMNS-QKLTPELLLL 700 (978)
T ss_pred -cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCC----CceeehhhhHHHHHHHHHhcc-cccCHHHHHH
Confidence 566799999999999999998432 33444444443222111 0111 2233334444443322 4455555556
Q ss_pred hHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccc-ccccHHHHH
Q 002465 636 MPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG-FFPWIDQVA 714 (919)
Q Consensus 636 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~-~~p~~~~~~ 714 (919)
+|.++..+....+ .-..++..+..++--.+.. +.-|...++
T Consensus 701 ~p~l~~~iE~ste--------------------------------------~L~t~l~Ii~sYilLd~~~fl~~y~~~i~ 742 (978)
T KOG1993|consen 701 FPHLLYIIEQSTE--------------------------------------NLPTVLMIISSYILLDNTVFLNDYAFGIF 742 (978)
T ss_pred HHHHHHHHHhhhh--------------------------------------hHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 6666655533110 0012333444444333322 233555555
Q ss_pred HHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 002465 715 PTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL-HKEPDTEICASMLDSLN 793 (919)
Q Consensus 715 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~e~~~~~~~~~~~~l~ 793 (919)
+.+...+ .+||.....++-.++..+-.. ++-.-..++.-++|.++..+ .+++.|-+....+..++
T Consensus 743 k~~~~~l-----~dvr~egl~avLkiveili~t---------~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 743 KKLNDLL-----DDVRNEGLQAVLKIVEILIKT---------NPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHHHHH-----HHhhHHHHHHHHHHHHHHHhh---------hHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 5554444 467777776666666554221 11111224444555555554 45667777766666666
Q ss_pred HHH
Q 002465 794 ECI 796 (919)
Q Consensus 794 ~~i 796 (919)
++.
T Consensus 809 Ri~ 811 (978)
T KOG1993|consen 809 RIS 811 (978)
T ss_pred HHH
Confidence 654
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.95 E-value=6.4e-22 Score=212.52 Aligned_cols=702 Identities=15% Similarity=0.202 Sum_probs=490.3
Q ss_pred HHHHHhcCCChHHHHHHHHHH-HHhhhc----Cc---hHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCC
Q 002465 26 TLISHLMSTSNEQRSEAELLF-NLCKQQ----DP---DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (919)
Q Consensus 26 ~~l~~~~s~d~~~r~~Ae~~L-~~~~~~----~p---~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~ 97 (919)
++++.+.|+|.+-|-.|+..| .++++. +- ...+..+++.|. ..+.+++.+|.-++.-+.++ ++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsK--------vk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSK--------VK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhh--------ch
Confidence 889999999999999999765 456652 11 124567777765 57889999999999888754 66
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-------CCcchhHHHHHHhhcCCC--hhHHHHHHHHHH
Q 002465 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSSDS--VKLQESAFLIFA 168 (919)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~-------~~w~~ll~~l~~~~~s~~--~~~r~~al~~l~ 168 (919)
++..+.+-+.|...+.+ .....|...+-.+..+....-|. ...+.+.|.+.+.+..+. ...+..++.+++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 77888888888888776 35556655554454444433331 245677777777776543 357777888888
Q ss_pred HhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHH
Q 002465 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (919)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~ 248 (919)
.+...++.-+.++...++..++--+..+ ...||..|+.+++.+..+.+ ...|..++..+++-+. +.......
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~---~~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLS---NRTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccC---CCCchHHH
Confidence 8888877766666677777777777776 78899999999999998763 4455555555444443 23445555
Q ss_pred HHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcC-CCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHH
Q 002465 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (919)
Q Consensus 249 ~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~-~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~ 327 (919)
...+.+|..++...+..+..|++.+++.+.+.... ...+++.|+.+++.+..+.. +.| +...++.+.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp---~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCP---KEILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hCh---hhhcccchHHHHHHH
Confidence 66788999999888888999999998888877621 24578899999999999988 455 345678888888888
Q ss_pred HhhcCCCCCcccccCCCCCcc-----ccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 002465 328 SMLLDIEDDPLWHSAETEDED-----AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIA 400 (919)
Q Consensus 328 ~~l~~~~~~~~w~~~~~~~ed-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~ 400 (919)
.++.+ ||++..+.+||+| ++++..+ -.++-. |-.|++|++|..+
T Consensus 305 ~yisY---DPNy~yd~~eDed~~~~ed~eDde~--------------------------~deYsDDeD~SWkVRRaAaKc 355 (1233)
T KOG1824|consen 305 SYISY---DPNYNYDTEEDEDAMFLEDEEDDEQ--------------------------DDEYSDDEDMSWKVRRAAAKC 355 (1233)
T ss_pred HHhcc---CCCCCCCCccchhhhhhhccccchh--------------------------ccccccccchhHHHHHHHHHH
Confidence 88764 3333322222211 0010000 011222 3469999999999
Q ss_pred HHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHH
Q 002465 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (919)
Q Consensus 401 l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~ 480 (919)
+..+...-.+........+-|.++..+++....|+...+.+.-.+....++-. ..+.| +.+.+.
T Consensus 356 l~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~-------------~~~~d--~d~~e~- 419 (1233)
T KOG1824|consen 356 LEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI-------------EVLAD--NDAMEQ- 419 (1233)
T ss_pred HHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc-------------ccccC--chhhhc-
Confidence 99999988887778888889999999999999999888888777666554322 11223 112211
Q ss_pred HHHHHHHHHhcCC--CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCC
Q 002465 481 AASAVLNFSENCT--PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (919)
Q Consensus 481 a~~al~~l~~~~~--~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~ 558 (919)
...+ ...+..-.+.|+..+.+.+.+.+-..+...+..+..++...++...++++.++|.+...+.+...
T Consensus 420 ---------~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSs 490 (1233)
T KOG1824|consen 420 ---------GGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSS 490 (1233)
T ss_pred ---------cCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccc
Confidence 1111 11223344556666666666666567778889999999999999999999999999998854322
Q ss_pred cccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc-------CCcccc
Q 002465 559 KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-------QDFLPY 631 (919)
Q Consensus 559 ~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g-------~~~~~~ 631 (919)
...++..++-++.......+++.|-|+.+.+.+.+..-..+.+ ..+...++.....+++++. -++.||
T Consensus 491 --ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f---yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 491 --SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF---YKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred --hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch---HhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 2335555666666555667789999999998887765322111 1133344445566666643 367899
Q ss_pred hhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHH
Q 002465 632 MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID 711 (919)
Q Consensus 632 l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~ 711 (919)
+..++...++.+... |-| .+.|+.|+.+++.++..+|+.+.-.++
T Consensus 566 v~~m~~~tl~rL~a~------------------d~D-----------------qeVkeraIscmgq~i~~fgD~l~~eL~ 610 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKAT------------------DSD-----------------QEVKERAISCMGQIIANFGDFLGNELP 610 (1233)
T ss_pred HHHHHHHHHHHHhcc------------------ccc-----------------HHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 999999999988542 111 356889999999999999998999999
Q ss_pred HHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 002465 712 QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDS 791 (919)
Q Consensus 712 ~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 791 (919)
.+++.++..+. ++--|..|+.++..++.+... -.....++.++|.+...+.+. .+..+.+.+.+
T Consensus 611 ~~L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~------------i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a 674 (1233)
T KOG1824|consen 611 RTLPILLERLG---NEITRLTAVKALTLIAMSPLD------------IDLSPVLTEILPELASFLRKN-QRALRLATLTA 674 (1233)
T ss_pred HHHHHHHHHHh---chhHHHHHHHHHHHHHhccce------------eehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999887 567799999999888765310 113456667777777666543 44567778888
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHc
Q 002465 792 LNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTF 871 (919)
Q Consensus 792 l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~~ 871 (919)
+..+++..|..++...+..++..+...+... +--+-+.+..++.+++...
T Consensus 675 ~~~L~~~~~~~~~~~~~e~vL~el~~Lises------------------------------dlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 675 LDKLVKNYSDSIPAELLEAVLVELPPLISES------------------------------DLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhhhHH------------------------------HHHHHHHHHHHHHHHHhcc
Confidence 8889988888777777777777777776542 2234556888899999888
Q ss_pred cccchhhHHHHHHhHhhhhc
Q 002465 872 KAAFLPFFDELSSYLTPMWG 891 (919)
Q Consensus 872 ~~~~~~~~~~l~~~~~~~~~ 891 (919)
+.....+-..+++.+...++
T Consensus 725 ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 725 PSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred cHHHHHHhhhhHHHHHHHhh
Confidence 88777777778888887775
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=1.7e-20 Score=201.79 Aligned_cols=644 Identities=14% Similarity=0.171 Sum_probs=438.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~---~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
.+.-+|+.+-..+.++...|-+-+.-+.++-++.-+..+.+-|++ +...+.|-.+++-|+..+..-.+..-..+.+.
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 445556666667889999999988876655554445666666654 56788999999999999887432223345666
Q ss_pred HHHHHHHHHHHHHhh-cchHhHHHHHHHHHHHHHhccc---CCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhh
Q 002465 100 TQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNIL---PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~-e~~~~vr~~~~~~i~~i~~~~~---~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~ 175 (919)
+...+-..+.+.+.. +....++--.+++++.+..... | +.-..++..+.-.+.++...+|..++.+++.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~-~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP-NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc-chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666654 3445576666666666655432 2 1223455556666677888999999999999999887
Q ss_pred hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHH---hcCChHHHHHHH
Q 002465 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL---NNGNEATAQEAL 252 (919)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l---~~~~~~~~~~a~ 252 (919)
.. .+..++..+...|..+.+...-..-+++++.+..... ..+...++.++..+.+.. +..+.+.|..++
T Consensus 207 ~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag-----~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 207 RD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG-----HRFGSHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc-----chhhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 66 4677888888888776444444456688888887642 234445555555555555 567888999999
Q ss_pred HHHHHHHccCcHHHHHhHHHHHHHHHHhhcC--------------------------------CCcChhHHHHHHHHHHH
Q 002465 253 ELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------------------ESLEEGTRHLAIEFVIT 300 (919)
Q Consensus 253 ~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~--------------------------------~~~~~~vr~~al~~l~~ 300 (919)
+.+..+...+|..+.||.+.+++.++..++. .|..+.||+.|..++..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999988876520 11235689999999988
Q ss_pred HHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCC-------------------CcccccCCCCCccccCCcccchHHHH
Q 002465 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIED-------------------DPLWHSAETEDEDAGESSNYSVGQEC 361 (919)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~-------------------~~~w~~~~~~~ed~~~~~~~~~a~~~ 361 (919)
++.. .. ..++.+...+-|.++..+.+.++ -.+|..+++..+. +.....
T Consensus 359 ~IsS---R~---E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~--~g~~s~----- 425 (1233)
T KOG1824|consen 359 VISS---RL---EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ--GGTPSD----- 425 (1233)
T ss_pred HHhc---cH---HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc--cCCccc-----
Confidence 8874 11 11334444455555544443322 2345442221111 111110
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCC--HhHHHHHH
Q 002465 362 LDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWAAI 439 (919)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~--~~vr~~a~ 439 (919)
+..+ ....|.+...+...+.+...+.|..++..|..++...++...++++.++|.+...+.|.+ ...+..++
T Consensus 426 ~~~L------~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L 499 (1233)
T KOG1824|consen 426 LSML------SDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDAL 499 (1233)
T ss_pred hHHH------HhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHH
Confidence 1111 234566777777778888888999999999999999998889999999999999998864 45666666
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC------ccccCcHHHHHHHHHHHhh
Q 002465 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 440 ~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~------~~l~~~l~~i~~~L~~~l~ 513 (919)
..+.......+++...++.+.+.|.+.....+ +-+.+...|......+++.+.+ -...||+..+....++.+.
T Consensus 500 ~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d-~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 500 VFLYSALISHPPEVFHPHLSALSPPVVAAVGD-PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred HHHHHHHhcCChhhcccchhhhhhHHHHHhcC-chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHh
Confidence 66655555555544488999999999999999 8888888888877777765432 2356899999988888876
Q ss_pred cC--ChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHH
Q 002465 514 NG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (919)
Q Consensus 514 ~~--~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i 591 (919)
.. +.+||+.++.|+|.++...|+.....++.++|.+.+-+++. .-|-.|+.+++.|+.+.-.-...|-..++
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE------iTRl~AvkAlt~Ia~S~l~i~l~~~l~~i 652 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE------ITRLTAVKALTLIAMSPLDIDLSPVLTEI 652 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch------hHHHHHHHHHHHHHhccceeehhhhHHHH
Confidence 54 58999999999999999999888889999999999888542 24666888888887654323344556666
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccch-hhhhHHHHHhcccCCCccccCCCCCcccccCCCcccch
Q 002465 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 670 (919)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l-~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (919)
++.+...... ..+..+...+.++..+.+.++..+.+++ ..++-.+...++.
T Consensus 653 l~~l~~flrK---~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise------------------------- 704 (1233)
T KOG1824|consen 653 LPELASFLRK---NQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE------------------------- 704 (1233)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-------------------------
Confidence 6666553221 1244677788889999999988887664 3333333332211
Q ss_pred hccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHH
Q 002465 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 671 ~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (919)
+.+..-..|+.++..++..-+..+.-....+++.++.++. ++-+.-.|..++-.++...
T Consensus 705 ------------sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~---Spllqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 705 ------------SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR---SPLLQGGALSALLLFFQAL 763 (1233)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh---CccccchHHHHHHHHHHHH
Confidence 1122234577788888877776666666666777766665 3466666666555554443
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.8e-20 Score=190.95 Aligned_cols=650 Identities=14% Similarity=0.147 Sum_probs=418.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHc----cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHH
Q 002465 27 LISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (919)
Q Consensus 27 ~l~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~l~~il~----~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~ 101 (919)
.++.+-|+.+..-..|-+.+..+..- -|....+.|...+. ..++...++.+...+.....+. +|+..
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--------~Pe~l 170 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE--------APEDL 170 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--------CHHHH
Confidence 46677888888878888877766541 34333455665554 3566777888888888877653 23333
Q ss_pred HHHHH-----HHHHHHhhcchHhHHHHHHHHHHH-H--Hhccc-CCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002465 102 SSLKS-----MLLQSIQLESAKSISKKLCDTVSE-L--ASNIL-PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (919)
Q Consensus 102 ~~ik~-----~ll~~l~~e~~~~vr~~~~~~i~~-i--~~~~~-~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (919)
-..-+ ...-.++++++..+|-.+-.++.. + .+..+ .+..-+-++..+.+..++++..+..+++-||..|..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~ 250 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMM 250 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHH
Confidence 22222 233456677888888776665543 1 11111 113445567777788888999999999999998887
Q ss_pred hhhhhccccHHHH-HHHHHHhhCCCCChHHHHHHHHHHHHHHHh-hcCc---------------chhhHHhhhHHHHHHH
Q 002465 173 YIGDTLTPHLKHL-HAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSS---------------ADRDRFQDLLPLMMRT 235 (919)
Q Consensus 173 ~~~~~~~~~~~~l-~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~---------------~~~~~~~~~~p~il~~ 235 (919)
..-+.+.+++++. ......++.++ +.+|...|+...+.+++. ++.. ..+....+.+|.+++.
T Consensus 251 LyY~fm~~ymE~aL~alt~~~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~L 329 (858)
T COG5215 251 LYYKFMQSYMENALAALTGRFMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSL 329 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHH
Confidence 6555555566554 45667788887 999999999888766653 2110 1122345577888887
Q ss_pred HHHHHh---cCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhh
Q 002465 236 LTESLN---NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (919)
Q Consensus 236 l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~ 312 (919)
|...=. .+++.....|-.||.-+++..+..+.. .++.+.-+-+. ..+..-|..|.-.++++-+ .|..
T Consensus 330 L~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~---pVl~FvEqni~--~~~w~nreaavmAfGSvm~----gp~~- 399 (858)
T COG5215 330 LEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR---PVLGFVEQNIR--SESWANREAAVMAFGSVMH----GPCE- 399 (858)
T ss_pred HHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH---HHHHHHHHhcc--CchhhhHHHHHHHhhhhhc----CccH-
Confidence 765222 235667777888888777766654432 23344434333 3456668888888888877 3421
Q ss_pred hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcC----CCcchHHHHHHHHHhhCC
Q 002465 313 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG----GNTIVPVASEQLPAYLAA 388 (919)
Q Consensus 313 ~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~~ 388 (919)
.....++.+.+|.+...|.+.. -| ....+..|+..++.+++ +...++.........+.
T Consensus 400 ~~lT~~V~qalp~i~n~m~D~~---l~--------------vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~- 461 (858)
T COG5215 400 DCLTKIVPQALPGIENEMSDSC---LW--------------VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM- 461 (858)
T ss_pred HHHHhhHHhhhHHHHHhcccce---ee--------------hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh-
Confidence 1233466677777766654321 12 22345677877776653 33333333333323333
Q ss_pred CCHHHHHHHHHHHHHHHHhcH-------HHHHHhHHHHHHHHHhh--CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 002465 389 PEWQKHHAALIALAQIAEGCA-------KVMVKNLEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (919)
Q Consensus 389 ~~~~~r~aal~~l~~i~~~~~-------~~~~~~l~~l~~~l~~~--l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (919)
++++.-....+.+..++.+.. ..+.++.+.++..+++. +.+.+...|.+++.+||.+...+++.+ .+.+.
T Consensus 462 D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-~~~~a 540 (858)
T COG5215 462 DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-SDILA 540 (858)
T ss_pred ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-HHHHH
Confidence 233333344444445554443 34556677777777764 245667789999999999998887655 33332
Q ss_pred hhHHHHHhhc-----------cCC---CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCC-hhHHHHHH
Q 002465 460 QVLPALAGAM-----------DDF---QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQEGAL 524 (919)
Q Consensus 460 ~ll~~l~~~l-----------~d~---~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~v~~~~l 524 (919)
.+.....+.+ ... ....++..-+..|..+++..++ .+++.-+.++..+++.+++.+ ..+...++
T Consensus 541 ~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-~ie~v~D~lm~Lf~r~les~~~t~~~~dV~ 619 (858)
T COG5215 541 GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-DIEDVEDQLMELFIRILESTKPTTAFGDVY 619 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHhccCCchhhhHHH
Confidence 3322222222 110 1235677888888888888875 477888889999999999885 46778899
Q ss_pred HHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCC
Q 002465 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME 604 (919)
Q Consensus 525 ~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 604 (919)
.+++.+..+.++.|..|.+.++|.+...+ ++. .+.+-..++..++.++.++| ..|.+|++.++..+.+.+.+. .
T Consensus 620 ~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~---d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~ 693 (858)
T COG5215 620 TAISALSTSLEERFEQYASKFIPYLTRAL-NCT---DRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-A 693 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cch---hHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-h
Confidence 99999999999999999999999999998 333 34466678888999999999 679999999999999966532 3
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechh
Q 002465 605 TDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (919)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (919)
.++.++..++.+|+.|+..+|.+|.+||..|+-.+.+.-+.+|... .... .|....+...+
T Consensus 694 ~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~----------------~~~~---~dy~~~~~~~v 754 (858)
T COG5215 694 THRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD----------------EVYV---DDYRKNAVQLV 754 (858)
T ss_pred hccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC----------------ceeH---HHHHHHHHHHH
Confidence 4566899999999999999999999999999988877766554310 0000 01111111111
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcC-ChHHHHHHHHhHHHHHHHH
Q 002465 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~ 744 (919)
.+ |.-.++.=...-...+.||+..++..+-..-.|+. ++..-++|+..+++|...+
T Consensus 755 ~~----ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mf 811 (858)
T COG5215 755 NC----AYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMF 811 (858)
T ss_pred HH----HHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhC
Confidence 11 11112222222346689999999988775555543 3555678899999998765
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.5e-19 Score=184.61 Aligned_cols=692 Identities=16% Similarity=0.226 Sum_probs=441.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCC--Ccc-----
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDS--FLW----- 93 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~--~~w----- 93 (919)
.+..+|-.+-++.+..|+.|-..|..=.. .-+..+...++.++.+ +-+.+-|++-.-.+-+.+.+-+. ..+
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 45556666777888999999988865332 1233334445555544 44566687777777666655210 000
Q ss_pred ---c--CCCHHHHHH-----HHHHH---------HHHHhh---cchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHh
Q 002465 94 ---P--RLSLHTQSS-----LKSML---------LQSIQL---ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC 151 (919)
Q Consensus 94 ---~--~l~~~~~~~-----ik~~l---------l~~l~~---e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~ 151 (919)
. -+.++.... |.+.| +..+.- ..++.||+..+.+++.++++. ..|.++|+|...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHH
Confidence 0 012222111 11211 122221 147889999999999999875 568999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHH
Q 002465 152 VSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (919)
Q Consensus 152 ~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p 230 (919)
+.|. ++..|..++.+..+|+...+-...+|+..++.++.+++.|. +..||.-+..+++.+++.. .+...+.|.
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fD---- 593 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFD---- 593 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHH----
Confidence 9987 88999999999999999999989999999999999999998 8999999999999998764 333445554
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHh-HHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccc
Q 002465 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ-LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (919)
Q Consensus 231 ~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~ 309 (919)
.++..|.+.+..........-+.++.-++-........| ...++-.+..-. ...+++.+...+.++..+|......|
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~~ 671 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVEP 671 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCCH
Confidence 455555555544344444455555555554333322222 234444444433 34678899999999999988633223
Q ss_pred hhhhc--chhhHH---------------HHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCC
Q 002465 310 GMMRK--LPQFIN---------------RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (919)
Q Consensus 310 ~~~~~--~~~~~~---------------~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (919)
...+. ++.|+. +++........+...++-....-++-. ++....+.....+.+.+...+|..
T Consensus 672 ~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lk-de~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 672 AYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLK-DEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred HHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhc-cccHHHHHHHHHHHHHHHhccccc
Confidence 22211 111111 111111111111100000000000000 111123455667777777777654
Q ss_pred cchHH----HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 373 TIVPV----ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 373 ~~~~~----l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
.+-.. ++.-+.-.++.++-... .-+..|+.++..++...++|++.|+..++..|+++.+.||..|+..++.++..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 44333 33333333443332222 45678888888888888899999999999999999999999999999999876
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 002465 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (919)
Q Consensus 449 ~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~ 528 (919)
+...--...+..+=-.|...|.. ..+.|......|+..++...+-..+.|-+..+++.|...|++...+++++.+..++
T Consensus 830 lktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg 908 (1172)
T KOG0213|consen 830 LKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVG 908 (1172)
T ss_pred HHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHH
Confidence 64321123444555567788888 88999999999999999988766678889999999999999999999999999999
Q ss_pred HHHHhhHHHH--HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCC
Q 002465 529 SVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETD 606 (919)
Q Consensus 529 ~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~ 606 (919)
.|+...++-. ..++..+...+. .|.. -...+|..|.+++|.|++++|+. +++..+++-+.. .+
T Consensus 909 ~IadrgpE~v~aREWMRIcfeLle-lLka----hkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnnLkv---qe 973 (1172)
T KOG0213|consen 909 TIADRGPEYVSAREWMRICFELLE-LLKA----HKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNNLKV---QE 973 (1172)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHH-HHHH----HHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhcchH---HH
Confidence 9998877521 234444443332 2222 13457888999999999999964 345555441110 01
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHH
Q 002465 607 DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 686 (919)
Q Consensus 607 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 686 (919)
...|...--+++-+ ++...|| .++|.++.-... |+. .|.+++
T Consensus 974 Rq~RvcTtvaIaIV----aE~c~pF--tVLPalmneYrt-Pe~-----------------------------nVQnGV-- 1015 (1172)
T KOG0213|consen 974 RQNRVCTTVAIAIV----AETCGPF--TVLPALMNEYRT-PEA-----------------------------NVQNGV-- 1015 (1172)
T ss_pred HHhchhhhhhhhhh----hhhcCch--hhhHHHHhhccC-chh-----------------------------HHHHhH--
Confidence 11111111133333 4445565 678888776542 221 233343
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 002465 687 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSD 766 (919)
Q Consensus 687 ~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (919)
++.++-+....|+.-..|+-.+.|.+.-.+.|. +..-|+.|..++.++.-.+. .....+.+-.+++
T Consensus 1016 -----Lkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1016 -----LKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLN 1081 (1172)
T ss_pred -----HHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHH
Confidence 446777777777777788888888887777764 66779999999888764321 1113455677888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 002465 767 FIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (919)
Q Consensus 767 ~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~ 801 (919)
.++|.++ |+.+.++.+..+++..+-...|+
T Consensus 1082 ~iWpNIl-----e~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1082 LIWPNIL-----ETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred Hhhhhhc-----CCChHHHHHHHHHHHHHHHHhch
Confidence 8888865 35678888888888888777777
No 16
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-18 Score=178.29 Aligned_cols=511 Identities=15% Similarity=0.143 Sum_probs=322.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccC----
Q 002465 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR---- 95 (919)
Q Consensus 21 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~---- 95 (919)
.+.+.+++.+.++.|...|+.||+.|.++.| +|+ |+..+++++.+ ..++.+|+.|++++||.+.+. |..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 4678899999999999999999999999999 787 57899999876 478999999999999999997 875
Q ss_pred -----CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002465 96 -----LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (919)
Q Consensus 96 -----l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (919)
..++.+..+.+.++..+.. +....|.....++..+...++|...|+ +.|...+++++++..+...|+.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 3455666666666666654 455667777778888888899989999 999999999999999999999999999
Q ss_pred hhhhh-------hhccccHHHHHHHHHHh---hCCC---CChHHHHHHHHHHHHHHHh-hcCc-chhhHHhhhHHHHHHH
Q 002465 171 SQYIG-------DTLTPHLKHLHAVFLNC---LTNS---NNPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (919)
Q Consensus 171 ~~~~~-------~~~~~~~~~l~~~l~~~---l~~~---~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~~~~~~p~il~~ 235 (919)
++... ..+.+....++|++.+. +.+. ++.++..-.++.+...+.+ +|.. ...+.+..++...+.+
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 97521 11223444555655443 2221 1334444445544444332 2210 0123334444444444
Q ss_pred HHHHHh----cCChHHH---------HHHHHHHHHHHccCcHH--------HH----HhHHHHHHHHHHhh---cCCC--
Q 002465 236 LTESLN----NGNEATA---------QEALELLIELAGTEPRF--------LR----RQLVDVVGSMLQIA---EAES-- 285 (919)
Q Consensus 236 l~~~l~----~~~~~~~---------~~a~~~l~~l~~~~~~~--------~~----~~~~~li~~ll~~~---~~~~-- 285 (919)
++.-+. +-+|++| +.|+..|..+...+.+. +. ..++.++...++.. .+..
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 432111 1244443 44566666666554221 11 12222333222221 1111
Q ss_pred cChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHH-HHHhhcCCCC-CcccccCCCC------CccccCCcccch
Q 002465 286 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIED-DPLWHSAETE------DEDAGESSNYSV 357 (919)
Q Consensus 286 ~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~-l~~~l~~~~~-~~~w~~~~~~------~ed~~~~~~~~~ 357 (919)
..+ .-...+.++...|.. ..+.++...|+++-++.. +++.++-.++ .+.|..+.++ |--++..++.-+
T Consensus 314 lsd-~~LYfi~~Fve~cv~---~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdla 389 (970)
T COG5656 314 LSD-IELYFIDFFVELCVD---ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLA 389 (970)
T ss_pred cch-HHHHHHHHHHHHHhh---hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHH
Confidence 112 223334444443331 223455566666666553 4555543332 2234333221 000112223333
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhC-------C-CCHHHHHHHHHHHHHHHHhc--HHHHHHhHH-HHHHHHHhh
Q 002465 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-------A-PEWQKHHAALIALAQIAEGC--AKVMVKNLE-QVLSMVLNS 426 (919)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------~-~~~~~r~aal~~l~~i~~~~--~~~~~~~l~-~l~~~l~~~ 426 (919)
+..++-..+..- ++..+..+++++...+. + ++.+..++|+..++++..-. .......++ -+++.+.+.
T Consensus 390 al~fl~~~~sKr-ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 390 ALFFLIISKSKR-KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHhccc-chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 444444333333 36666677777776662 1 46788899999999988722 223333444 367888889
Q ss_pred CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC-CccccCcHHHHH
Q 002465 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYLDGIV 505 (919)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~-~~~l~~~l~~i~ 505 (919)
++++....|..||..++.+.+.++. .....++.....+++++ +.-.|+..|+.|+..|+.+-. ...+..|++..|
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tm 544 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETM 544 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHH
Confidence 9999999999999999999888876 34677888888999998 778899999999999987642 234678999999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHH
Q 002465 506 SKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (919)
Q Consensus 506 ~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~ 551 (919)
+.|+.+-+.-+..+.. .++..++....+.+.||.+.++..|.+
T Consensus 545 ekLLsLSn~feiD~LS---~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 545 EKLLSLSNTFEIDPLS---MVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHHhcccccchHHH---HHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 9999987665544333 345556667777777777777666655
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=7.3e-19 Score=184.23 Aligned_cols=590 Identities=16% Similarity=0.194 Sum_probs=384.9
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
.++..++.. ++. .+..|.++++.|..=...+. ....|..++|.+++.-. +...|......+..+.....
T Consensus 364 ~i~~llLkv-KNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~tL------eDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLLKV-KNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPTL------EDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHHhh-cCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCccc------cchhhhhHHHHHHHHHHhhc
Confidence 455555443 444 78899999988876555442 12234444444433211 23445566667777666666
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 002465 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 264 ~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
....+|+..|+-.+-.++- +.+...|...-++++.++.. .+ +...+..+-| +.+
T Consensus 433 dlvrpYVhkILvVieplli--ded~yar~egreIisnLaka----aG----la~mistmrp-------Did--------- 486 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLI--DEDYYARVEGREIISNLAKA----AG----LATMISTMRP-------DID--------- 486 (1172)
T ss_pred ccchhceeeeEEEeeccee--cchHHHhhchHHHHHHHHHH----hh----hHHHHHhhcC-------Ccc---------
Confidence 6677777765433322221 34455677777888888873 11 1111111111 111
Q ss_pred CCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHH
Q 002465 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (919)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~ 422 (919)
..+.-.++....++..++.++| .|.++|++.....|. +|+.|+.++.+..+|+.-.+-...+|+..++..
T Consensus 487 -----n~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 487 -----NKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred -----cccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 0111245677788999999998 567777888877776 899999999999999987776778999999999
Q ss_pred HHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHH
Q 002465 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (919)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (919)
+-.++.|.+..||..++.+++.+++...|.- ...++.++..|-+.+.. .-...-.+-..|++.++..+..+.-.-|-.
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHH
Confidence 9999999999999999999999999887644 45677777777776665 223333444556666666655433223455
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChh
Q 002465 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (919)
Q Consensus 503 ~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~ 582 (919)
.++-.+..-+++++.+.+..++.++..++...|-.=.-....++|.++..+.....--.+..-.+..++-..++..+|..
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~ 715 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD 715 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch
Confidence 77888888889999999999999999998877743222234555555544322111111122233567777888888833
Q ss_pred hhhhhHHHHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHhcC-Cccc-chhhhhHHHHHhcccCCCccccCCCCCcc
Q 002465 583 KFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLP-YMSVVMPPLLQSAQLKPDVTITSADSDNE 659 (919)
Q Consensus 583 ~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~-~l~~i~~~ll~~~~~~~~~~~~~~~~~~~ 659 (919)
+++..++. +. +..++.|.-...+..++...+|. +|.. .-..++..++-.++.+..
T Consensus 716 -------~~v~R~v~~lk----de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt----------- 773 (1172)
T KOG0213|consen 716 -------PIVSRVVLDLK----DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT----------- 773 (1172)
T ss_pred -------HHHHHHhhhhc----cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-----------
Confidence 23333222 22 23345777788888888888775 4543 345667777777753210
Q ss_pred cccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHH
Q 002465 660 IEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPE 739 (919)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~ 739 (919)
++. .-+..++.++..++....||+++++..++..+.+. ++.||+.|+.+++.
T Consensus 774 -----~d~----------------------vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 774 -----EDS----------------------VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLISS 825 (1172)
T ss_pred -----chh----------------------hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHHH
Confidence 000 12346888999999999999999999999999865 89999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH
Q 002465 740 LLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQV 818 (919)
Q Consensus 740 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~-~~~~~~~~i~~~l~~~ 818 (919)
+....+.+- ...+...+. -.|.+.+ .+.++++.-.++.+++.+++..|-. +.+ -++.++..+..+
T Consensus 826 la~Vlktc~---------ee~~m~~lG---vvLyEyl-geeypEvLgsILgAikaI~nvigm~km~p-Pi~dllPrltPI 891 (1172)
T KOG0213|consen 826 LAKVLKTCG---------EEKLMGHLG---VVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTP-PIKDLLPRLTPI 891 (1172)
T ss_pred HHHHHHhcc---------HHHHHHHhh---HHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCC-ChhhhcccchHh
Confidence 988775431 111222222 2344455 4558999999999999999888753 443 367788888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCCHH
Q 002465 819 ITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAE 897 (919)
Q Consensus 819 l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 897 (919)
|++..+ .+.++..+++|.++...++... .--..+.=-++.+|+ +-..+
T Consensus 892 Lknrhe------------------------------KVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~ 940 (1172)
T KOG0213|consen 892 LKNRHE------------------------------KVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKE 940 (1172)
T ss_pred hhhhHH------------------------------HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 887432 3556788888888877666321 111123333334442 34577
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 002465 898 ERRIAICIFDDVAEQCREA 916 (919)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~ 916 (919)
.|..|+.+|+-|.+..|+.
T Consensus 941 iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred HHHHHHhhhhHHHHhcCHH
Confidence 8888998888888888764
No 18
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-16 Score=168.40 Aligned_cols=636 Identities=15% Similarity=0.184 Sum_probs=367.4
Q ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCH
Q 002465 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (919)
Q Consensus 22 ~~l~~~l~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (919)
+.++|++.+...| |++.|++|..++++++. .|.+| ..+.+++.. ..++.+|..+...|...++.. +...+.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl 76 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANL 76 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCH
Confidence 3677888887766 88999999999999999 68876 777888765 378999999999999999874 445788
Q ss_pred HHHHHHHHHHHHHHhh-----c---chHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-hhHHHHHHHHHHH
Q 002465 99 HTQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-VKLQESAFLIFAQ 169 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~-----e---~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~ 169 (919)
..++.+|..+...++- + ....++++++++++.+...++| ..|+.++..++..+.-+. ..-...-++++-.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 8888899888776552 2 2467999999999999999999 689998877775553221 1001111111111
Q ss_pred hhhhhh--------hh----------cc--------------------------------------c-------cHHHHH
Q 002465 170 LSQYIG--------DT----------LT--------------------------------------P-------HLKHLH 186 (919)
Q Consensus 170 l~~~~~--------~~----------~~--------------------------------------~-------~~~~l~ 186 (919)
+-.++. ++ ++ . .=+..+
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 111000 00 00 0 003445
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHH--HHhcCChHHHHHHHHHHH--------
Q 002465 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE--SLNNGNEATAQEALELLI-------- 256 (919)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~--~l~~~~~~~~~~a~~~l~-------- 256 (919)
+++...++ ..++|.+|+.|+..++..--++.+.-.+-..+...++...- .-+..+++.-...-+.+.
T Consensus 236 nLLy~fl~---ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~ 312 (980)
T KOG2021|consen 236 NLLYKFLN---IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTI 312 (980)
T ss_pred HHHHHHHh---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeeh
Confidence 55555554 34778888888877776422222221111111111221111 111134443333222222
Q ss_pred ---HHHccCcHH----HHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHh
Q 002465 257 ---ELAGTEPRF----LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (919)
Q Consensus 257 ---~l~~~~~~~----~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~ 329 (919)
++.+..... ....+-.+++++++.+.+. .+++....+.+|+.....-++.+..-.....++++++...++.
T Consensus 313 i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kq 390 (980)
T KOG2021|consen 313 IISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQ 390 (980)
T ss_pred hHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHH
Confidence 121111111 1222345778888888654 4555666677777665532112211122234677777777777
Q ss_pred hcCCCCCcccccCCCCCccccCCcccchHHH-HHHHHHHHcCCCcchHHHHHHHHHhhC---CCCHHHHHHHHHHHHHHH
Q 002465 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQE-CLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIALAQIA 405 (919)
Q Consensus 330 l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~-~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~l~~i~ 405 (919)
++..+ ...|...-+.+|+++....++.-.. .+++++.. .|+.+...+...+...+. ..+|..-+.|+..+..++
T Consensus 391 icyde-my~nddn~tg~EeEa~f~e~RkkLk~fqdti~~i-dpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lg 468 (980)
T KOG2021|consen 391 ICYDE-MYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVI-DPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLG 468 (980)
T ss_pred HhccH-HhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 76532 1223222111122222222222222 23333332 224444445555544433 457999999999999999
Q ss_pred HhcHHHH----------HHhHHHHHHHHHhh--CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh--hccC
Q 002465 406 EGCAKVM----------VKNLEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG--AMDD 471 (919)
Q Consensus 406 ~~~~~~~----------~~~l~~l~~~l~~~--l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~--~l~d 471 (919)
++.+... ...+..+++.+... +..+|+.|+-.-+..+.++...+..+. .+.+.++...+. ++.+
T Consensus 469 E~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~rglhn 546 (980)
T KOG2021|consen 469 ECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDSRGLHN 546 (980)
T ss_pred hccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccchhccc
Confidence 9775311 12334555555543 467899999888888888887766543 466666666664 4666
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCC------------hhHHHHHHHHHHHHHHhh---HH
Q 002465 472 FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK------------QMVQEGALTALASVADSS---QE 536 (919)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~------------~~v~~~~l~al~~l~~~~---~~ 536 (919)
.+..||.+|...+.+|++.+.+ .+.||.+.++..+..++.... ..-+....+++|.++... .+
T Consensus 547 -~ne~Vr~RawYLF~RfVKlLkk-qlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE 624 (980)
T KOG2021|consen 547 -KNENVRLRAWYLFTRFVKLLKK-QLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAE 624 (980)
T ss_pred -cccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHH
Confidence 7899999999999999999884 577999999999998884321 122334555666555332 22
Q ss_pred HHHHhHhhhhHHHH---------HHHhhcCCcccchhh---hHHHHHHHHHHhhhCh-----hh--hhhhHHHHHHHHHH
Q 002465 537 HFQKYYDAVMPFLK---------AILVNATDKSNRMLR---AKSMECISLVGMAVGK-----DK--FRDDAKQVMEVLMS 597 (919)
Q Consensus 537 ~~~~~~~~i~~~l~---------~~l~~~~~~~~~~lr---~~ai~~l~~l~~~~~~-----~~--~~~~~~~i~~~l~~ 597 (919)
.-..|...++.++. ..+. .+.+....- ..++.+++.+++.... +. ....+.++.+.++.
T Consensus 625 ~qaay~~~litpl~~~~~igl~~a~la--sde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~ 702 (980)
T KOG2021|consen 625 LQAAYANTLITPLILDQIIGLLFAQLA--SDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILV 702 (980)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHHHh--ccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHH
Confidence 23345554443222 2222 122211111 1233445555543220 00 11112333333333
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCee
Q 002465 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (919)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (919)
.+. .+...+.+|+.+-.++++++.++|.++.||+|..+..+++....+
T Consensus 703 ~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k------------------------------- 750 (980)
T KOG2021|consen 703 TLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK------------------------------- 750 (980)
T ss_pred HHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-------------------------------
Confidence 222 223446789999999999999999999999999999998765321
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHc
Q 002465 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 718 (919)
Q Consensus 678 ~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~ 718 (919)
|-..-+..|..++-..+.++.|.++++++.++
T Consensus 751 ---------Emvdfl~flsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 751 ---------EMVDFLGFLSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223446777777777777787777776654
No 19
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.86 E-value=6.1e-15 Score=152.60 Aligned_cols=496 Identities=18% Similarity=0.252 Sum_probs=322.0
Q ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCH
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (919)
.|.+-+.++.....++++..+++|++.|..+++ .|++| ...-.+|..+..|+.+..|..+|.+++..+ |+-++.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 466778889999999999999999999999999 89988 778888988999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc-chHh-------HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHh
Q 002465 99 HTQSSLKSMLLQSIQLE-SAKS-------ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e-~~~~-------vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l 170 (919)
+.+..||+.+++.+.+. ++.. +-+.+--.+-.|++.++| ..||+++|.+++..+ .+-.+.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 99999999998876542 2233 334456677888999999 799999999998766 4456777778888777
Q ss_pred hhhhhh----------------hccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHH
Q 002465 171 SQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (919)
Q Consensus 171 ~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~ 234 (919)
.+..-+ .+....++++..+.+.|....++....+.+..+..++.++|-. -.| ...+++
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~---yIf---eTnIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD---YIF---ETNIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh---HHH---HHHHHH
Confidence 765321 1223567889988888887767788889999999999887621 111 123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHccC--c-------HHHHHhHH----------------------------------
Q 002465 235 TLTESLNNGNEATAQEALELLIELAGTE--P-------RFLRRQLV---------------------------------- 271 (919)
Q Consensus 235 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~-------~~~~~~~~---------------------------------- 271 (919)
.+.+... ..|+.|..++.||.++++.. | ..+.-+++
T Consensus 237 Lv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 4443333 25667777777777666432 1 00000000
Q ss_pred ------HHHHHHHHhhcCCC------------------cChhHHHHHHHHHHHHHhh--hc--------c----------
Q 002465 272 ------DVVGSMLQIAEAES------------------LEEGTRHLAIEFVITLAEA--RE--------R---------- 307 (919)
Q Consensus 272 ------~li~~ll~~~~~~~------------------~~~~vr~~al~~l~~l~~~--~~--------~---------- 307 (919)
.++..-+..+++.+ .+.++-..+++.|..++.. .+ -
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 00000011111110 1233445566666665542 00 0
Q ss_pred -----cchhhhcc-------hhhHHHHHHHHHHhhcCCCCCcccccCCCCCc-------cccCCcccchHHHHHHHHHHH
Q 002465 308 -----APGMMRKL-------PQFINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIA 368 (919)
Q Consensus 308 -----~~~~~~~~-------~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~e-------d~~~~~~~~~a~~~l~~l~~~ 368 (919)
.|...... ...+.++.-.++..|..+++- .-.++++.| +.+....++...++|-.+...
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 01111000 011122223333333333211 111111111 111223444555666555543
Q ss_pred cCCCcchHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcHHHHH-HhHHHHHHHHH-----hhCCCCCHhHHHHHHH
Q 002465 369 LGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVL-----NSFRDPHPRVRWAAIN 440 (919)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~i~~~~~~~~~-~~l~~l~~~l~-----~~l~d~~~~vr~~a~~ 440 (919)
.- .+.-..++..+...+.+. +|+.-..-++++|+++..+.+... .++-.++..++ +.-+|....|......
T Consensus 474 ~v-~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 474 IV-DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hh-hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 22 334444555555555555 477778889999999887776332 44444444433 3456777777777888
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-------ccccCcHHHHHHHHHHHhh
Q 002465 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-------EILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 441 ~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-------~~l~~~l~~i~~~L~~~l~ 513 (919)
.+|++-..+...+ .++..++..++..++. ....|+..||..+-.+++.|+. ..-.||+..|+..|-+.-.
T Consensus 553 vvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~ 629 (1053)
T COG5101 553 VVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG 629 (1053)
T ss_pred eeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc
Confidence 8999888777766 6899999999999998 8899999999999999988752 2235788888887777666
Q ss_pred cCChhHHHHHHHHHHHHHHhhH
Q 002465 514 NGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 514 ~~~~~v~~~~l~al~~l~~~~~ 535 (919)
+-.+.-+.....|.|.+++..+
T Consensus 630 dL~pqQ~htfYeAcg~vIse~p 651 (1053)
T COG5101 630 DLEPQQKHTFYEACGMVISEVP 651 (1053)
T ss_pred cCChHHHhHHHHHHhHHHhccc
Confidence 6667777778888888887655
No 20
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-14 Score=155.54 Aligned_cols=604 Identities=17% Similarity=0.222 Sum_probs=371.9
Q ss_pred ChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCH
Q 002465 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (919)
Q Consensus 20 d~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (919)
+...+++++..+.++ +.+....+++.|+..+. .|.+| ..-.++++....+++|.++|+.|.-.+..+ |...++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 346788888888887 55566777778888877 56665 677788887788889999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-h----hHH-HHHHHHHHHh
Q 002465 99 HTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-V----KLQ-ESAFLIFAQL 170 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~-~----~~r-~~al~~l~~l 170 (919)
+....++..++..+... ....|-+.++-+++.++-+..| +.||.-+..++++++.+. + ..+ ..-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 99999998888877643 2455667777778877777777 699999988888887532 2 222 2234444433
Q ss_pred hhhhhh-------------hccccHHHHHHHHHHhhCCCC--Ch-----HHHHHHHHHHHHHHHhhcCcc--hhh-----
Q 002465 171 SQYIGD-------------TLTPHLKHLHAVFLNCLTNSN--NP-----DVKIAALNAVINFIQCLTSSA--DRD----- 223 (919)
Q Consensus 171 ~~~~~~-------------~~~~~~~~l~~~l~~~l~~~~--~~-----~vr~~a~~~l~~l~~~~~~~~--~~~----- 223 (919)
...... ++.......++++...++... .+ -.+..+++|...++.++.-+. ...
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~l 237 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVL 237 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 332211 122233445555555555441 12 356788888888887543110 000
Q ss_pred ------------------------------------------------HHhhhHHHHHHHHHHHH------hcCC--hHH
Q 002465 224 ------------------------------------------------RFQDLLPLMMRTLTESL------NNGN--EAT 247 (919)
Q Consensus 224 ------------------------------------------------~~~~~~p~il~~l~~~l------~~~~--~~~ 247 (919)
..-.+++.++..+++.. .+.+ .+.
T Consensus 238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~ 317 (982)
T KOG2022|consen 238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEE 317 (982)
T ss_pred HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 00011111111111111 1112 222
Q ss_pred HHHHHHHHHHHHccCcHHHHHh---------HHHHHHHHHHhhcCC---CcChhHHHHHHHHHHHHHhhhc------ccc
Q 002465 248 AQEALELLIELAGTEPRFLRRQ---------LVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARE------RAP 309 (919)
Q Consensus 248 ~~~a~~~l~~l~~~~~~~~~~~---------~~~li~~ll~~~~~~---~~~~~vr~~al~~l~~l~~~~~------~~~ 309 (919)
....+.+.+..+++....+..+ +..+++.++.+.+-+ ..++.+-..++.+|.++.+... ..+
T Consensus 318 i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~ 397 (982)
T KOG2022|consen 318 IVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQI 397 (982)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCc
Confidence 2333344444444443332222 234455555544332 2456667788999999887511 111
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCCCCC--cccccCCCCCccccCCccc-chHHHHHHHHHHHcCCCcchHHHHHHHHHhh
Q 002465 310 GMMRKLPQFINRLFAILMSMLLDIEDD--PLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYL 386 (919)
Q Consensus 310 ~~~~~~~~~~~~li~~l~~~l~~~~~~--~~w~~~~~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 386 (919)
.......+...+++..++..+.-+.+. ..|..++.| +...| +...+++-..=..+| +.++..+...+.+++
T Consensus 398 ~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-----~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~ 471 (982)
T KOG2022|consen 398 KKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-----QFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQAL 471 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhh
Confidence 000001144455666666666554322 135433211 22222 223334433334456 677788888888888
Q ss_pred CCCC-----HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 002465 387 AAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (919)
Q Consensus 387 ~~~~-----~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (919)
.+.+ |..-++.+..+..+++..+....+.++.++...... ++-.++..-..+...+|.++.+++... .|++.
T Consensus 472 aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~ 549 (982)
T KOG2022|consen 472 AAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNP 549 (982)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCc
Confidence 7655 999999999999999998877777777777655442 344588899999999999999998764 68999
Q ss_pred hHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhH-HH
Q 002465 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ-EH 537 (919)
Q Consensus 461 ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~--~~v~~~~l~al~~l~~~~~-~~ 537 (919)
.+|.+++.++. + +.-..+...+..+|+.|. ..+.||.++++...-..+...+ ...+..++.++|-+..... +.
T Consensus 550 sl~~L~~~Lh~-s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 550 SLPLLFQGLHN-S--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred hHHHHHHHhcC-c--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence 99999999986 3 444566677999999998 5688999999999888887654 7889999999999988766 45
Q ss_pred HHHhHhhhhHHHHHHHhhc----CCcccchhhhH-HHHHHHHHHhhhChh-------------------hhhhhHHHHHH
Q 002465 538 FQKYYDAVMPFLKAILVNA----TDKSNRMLRAK-SMECISLVGMAVGKD-------------------KFRDDAKQVME 593 (919)
Q Consensus 538 ~~~~~~~i~~~l~~~l~~~----~~~~~~~lr~~-ai~~l~~l~~~~~~~-------------------~~~~~~~~i~~ 593 (919)
...|+..++..+..-++.. .+.....+|.. -+.|++.+..++..+ .......++++
T Consensus 626 ~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~ 705 (982)
T KOG2022|consen 626 IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIP 705 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHH
Confidence 5678888888777766553 11122233321 245566666554200 01123445555
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCc-ccchhhhhHHHHHhc
Q 002465 594 VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQSA 643 (919)
Q Consensus 594 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~l~~i~~~ll~~~ 643 (919)
++-++.+-....++ +.+.+...+..=.+..+.+| .|++|.+.+.+....
T Consensus 706 ~~~kv~s~~~~~s~-vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 706 VFEKVLSMWLGLSD-VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred HHHHHHHHHhcchh-HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 55544332112222 33333223322234456678 799999999998844
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.86 E-value=1e-15 Score=157.92 Aligned_cols=687 Identities=15% Similarity=0.211 Sum_probs=422.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCC--Cccc---
Q 002465 22 APFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDS--FLWP--- 94 (919)
Q Consensus 22 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~--~~w~--- 94 (919)
-.+-.+|-..-++++..|+.+-..|..-.- .-|......++.++.+ +-+.+-|++-.-++.+.+..-+. ..+.
T Consensus 168 r~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 168 RDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred HhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeE
Confidence 355556666677788889998888764322 2344444555555544 45566788887777777655210 0000
Q ss_pred -----C--CCHHH------HHHHHHHHHH-HHh----------hcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHH
Q 002465 95 -----R--LSLHT------QSSLKSMLLQ-SIQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ 150 (919)
Q Consensus 95 -----~--l~~~~------~~~ik~~ll~-~l~----------~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~ 150 (919)
. +.++. ++.|.+.... +|. ...++.||+..+.+++.++++. .-++++|++-.
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl~a 323 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFLEA 323 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHHHH
Confidence 0 11111 1112211111 111 0147889999999999999875 45899999999
Q ss_pred hhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhH
Q 002465 151 CVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (919)
Q Consensus 151 ~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 229 (919)
.+.|. .+..|..++++..+|+...+-...+|+..++.++.+++.|. +..||.-+..+++.+++.. .+...+.|..
T Consensus 324 ~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~fd~-- 399 (975)
T COG5181 324 LCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQFDE-- 399 (975)
T ss_pred HhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHHHHH--
Confidence 99886 78999999999999999999888889999999999999997 8899999999999998764 2334455544
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc-CcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhccc
Q 002465 230 PLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (919)
Q Consensus 230 p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~ 308 (919)
++..|.+..+.........-+.+.+-++.. .|++..-+....+..++..+.. .+++.+...+.+...+.......
T Consensus 400 --vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s--pdeemkk~~l~v~~~C~~v~~~t 475 (975)
T COG5181 400 --VLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS--PDEEMKKDLLVVERICDKVGTDT 475 (975)
T ss_pred --HHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC--chhhcchhHHHHHHHHhccCCCC
Confidence 455555544433333344444444444432 2445555556677777776643 34555555454444444432111
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCC---CCCccccc------------CC-------CCCccccCCcc-cchHHHHHHHH
Q 002465 309 PGMMRKLPQFINRLFAILMSMLLDI---EDDPLWHS------------AE-------TEDEDAGESSN-YSVGQECLDRL 365 (919)
Q Consensus 309 ~~~~~~~~~~~~~li~~l~~~l~~~---~~~~~w~~------------~~-------~~~ed~~~~~~-~~~a~~~l~~l 365 (919)
|. .+.+++.|.++...-.. .|-+.+-. .+ -+.. .++..+ +.....+.+++
T Consensus 476 p~------~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~-~De~ep~r~m~a~~vsri 548 (975)
T COG5181 476 PW------KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY-SDEPEPYRKMNAGLVSRI 548 (975)
T ss_pred HH------HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc-cCCcchhhhhhhHHHHHH
Confidence 21 13344455444322100 00000000 00 0000 011122 33344455555
Q ss_pred HHHcCCCcchH----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 002465 366 AIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (919)
Q Consensus 366 ~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~ 441 (919)
...+|...+-. .++..+...++.++-.+. -.+-+++.+.....-..++|++.++..++..|+++.|.||..|+..
T Consensus 549 ~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl 627 (975)
T COG5181 549 FSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADL 627 (975)
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55554322222 222222222222221110 1112333333333334458999999999999999999999999999
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHH
Q 002465 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE 521 (919)
Q Consensus 442 L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~ 521 (919)
.|.++..+..--....+..+=..|...+.. ..++|......|+..+....+-..++|-+..|++.|...+.+...++..
T Consensus 628 ~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~ 706 (975)
T COG5181 628 MGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVA 706 (975)
T ss_pred HHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhh
Confidence 888887654211124455666677888888 7899999999999999888877778899999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHH--HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHh
Q 002465 522 GALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (919)
Q Consensus 522 ~~l~al~~l~~~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (919)
..+..++.++...++-. ..++......+- .|.. -..++|..|.+++|.|++++|++ +++..+++-+
T Consensus 707 nti~lvg~I~~~~peyi~~rEWMRIcfeLvd-~Lks----~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~LlnnL 774 (975)
T COG5181 707 NTIALVGTICMNSPEYIGVREWMRICFELVD-SLKS----WNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNL 774 (975)
T ss_pred hHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHH----hhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHhcc
Confidence 99999999998877522 234443333322 2222 13457888999999999999964 4555555422
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeee
Q 002465 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (919)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (919)
.. .+...|....-+++-+++.+| || .++|.++.-... |+. .
T Consensus 775 kv---qeRq~RvctsvaI~iVae~cg----pf--sVlP~lm~dY~T-Pe~-----------------------------n 815 (975)
T COG5181 775 KV---QERQQRVCTSVAISIVAEYCG----PF--SVLPTLMSDYET-PEA-----------------------------N 815 (975)
T ss_pred hH---HHHHhhhhhhhhhhhhHhhcC----ch--hhHHHHHhcccC-chh-----------------------------H
Confidence 11 011122222224444544444 44 567777765432 211 1
Q ss_pred eechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q 002465 680 IKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES 759 (919)
Q Consensus 680 v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 759 (919)
|.++ -+++++-+....|+.-..|+-.+.|.+-..+.|. ++.-|+.|...+.+|+-.+.. .+ ..+
T Consensus 816 VQnG-------vLkam~fmFeyig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~g-------tg-~ed 879 (975)
T COG5181 816 VQNG-------VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPG-------TG-DED 879 (975)
T ss_pred HHHh-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCC-------cc-cHH
Confidence 2333 3456777888888888889999999888888875 778899999999988755421 11 234
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 002465 760 YVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (919)
Q Consensus 760 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~ 801 (919)
.+-.+++.++|.++ |+.|.+.....+++..+-+..|+
T Consensus 880 a~IHLlNllwpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 880 AAIHLLNLLWPNIL-----EPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHhhhhcc-----CCCcHHHHHHHHHHHHHHHHhcc
Confidence 45667788888765 45677887888888777777776
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=1.5e-15 Score=183.70 Aligned_cols=759 Identities=15% Similarity=0.143 Sum_probs=448.4
Q ss_pred hHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCC
Q 002465 21 SAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD 89 (919)
Q Consensus 21 ~~~l~~~l~~~~s~--d~~~r~~Ae~~L~~~~~~~p~---------~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~ 89 (919)
......+++.+.++ +.+.|++|...|..+.+.+++ ..++.|+.+|. +.++.+|..|+-.|.++-..
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC--
Confidence 34677888888866 678899999888888775543 13577888886 46788999988777666433
Q ss_pred CCcccCCCHHHH-----HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc------chhHHHHHHhhcCCC--
Q 002465 90 SFLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS-- 156 (919)
Q Consensus 90 ~~~w~~l~~~~~-----~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w------~~ll~~l~~~~~s~~-- 156 (919)
++.+ ......|+..|.+ .+...|..++.++..++.....+..| ...+|.|..++++++
T Consensus 89 --------e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 89 --------EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred --------HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 1222 2223356777875 57889999999999998742111222 567888988888764
Q ss_pred -hhHHHHHHHHHHHhhhhhhhhcccc-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHH--hhhHHHH
Q 002465 157 -VKLQESAFLIFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLM 232 (919)
Q Consensus 157 -~~~r~~al~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~p~i 232 (919)
...+..+..+|..++..-....... -...+|.+...|.++ ++.++..|+.++..++...++ ..... ...+|.+
T Consensus 160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~L 236 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFES--SISKVLDAGAVKQL 236 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHH
Confidence 2345666788888886543221111 123778888888887 899999999988877755322 11111 2345555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCC-------cChhHHHHHHHHHHHHHhh
Q 002465 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~-------~~~~vr~~al~~l~~l~~~ 304 (919)
++.+.. ..++.++..|..+|..++...+..-...+. ..++.++..+..++ .....+..|...+..+|..
T Consensus 237 V~LL~s---g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 237 LKLLGQ---GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHcc---CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 555531 345688999999999999865443322221 23445554443221 2345688999999999883
Q ss_pred hcccchhhhcchhhHHHHHHHHHHhhcCCCC-----Cccccc------CCCCCccccCCcccchHHHHHHHHHHHcCCCc
Q 002465 305 RERAPGMMRKLPQFINRLFAILMSMLLDIED-----DPLWHS------AETEDEDAGESSNYSVGQECLDRLAIALGGNT 373 (919)
Q Consensus 305 ~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~-----~~~w~~------~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (919)
.+ .+++.|...+....+ +.-|.- .+..++...-... ..+...|-.+..+-.+..
T Consensus 314 ---~~-----------~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~-~~v~~~LV~Llr~k~p~~ 378 (2102)
T PLN03200 314 ---MS-----------ALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDP-TVIEQILVKLLKPRDTKL 378 (2102)
T ss_pred ---ch-----------hhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccc-cccHHHHHHHhCCCCCch
Confidence 11 111221111110000 000000 0000000000000 011122222222111111
Q ss_pred chHHH----------------------HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCC
Q 002465 374 IVPVA----------------------SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDP 430 (919)
Q Consensus 374 ~~~~l----------------------~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~ 430 (919)
....+ .+.+..++...+...+..+..++..++.+..+....... ..+|.++..|.++
T Consensus 379 vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~ 458 (2102)
T PLN03200 379 VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS 458 (2102)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC
Confidence 11111 223344555667889999999999999876654333333 3678899999999
Q ss_pred CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcH--HHHHHHH
Q 002465 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKL 508 (919)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~i~~~L 508 (919)
++.+|..|+++++.++.........-.....+|.|++.|.. ++..+++.|+|+|.+++.+- ......+ .+.++.|
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~--~qir~iV~~aGAIppL 535 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-GSQKAKEDSATVLWNLCCHS--EDIRACVESAGAVPAL 535 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCc--HHHHHHHHHCCCHHHH
Confidence 99999999999999987443222122345889999999998 88999999999999998742 1122223 2467788
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhh-hh
Q 002465 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR-DD 587 (919)
Q Consensus 509 ~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~-~~ 587 (919)
++++++.+..+++.++.+|..++...... .++.+..++... ....+..+++.++.+......+.+. ..
T Consensus 536 V~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsd----d~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 536 LWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGD----LPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCC----ChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 89999999999999999999998754432 224455565332 1235566777777775543322111 11
Q ss_pred --HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcc-cchhhhhHHHHHhcccCCCccccCCCCCcccccCC
Q 002465 588 --AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL-PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (919)
Q Consensus 588 --~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 664 (919)
...-++.+.+++.++ ++..+..+..++.+++..-..... ......+|.++..++...
T Consensus 605 ~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~----------------- 664 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT----------------- 664 (2102)
T ss_pred hhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-----------------
Confidence 124566777766642 334566666677777763222111 223455677777764311
Q ss_pred CcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccc-cccHH-HHHHHHccccCCcCChHHHHHHHHhHHHHHH
Q 002465 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF-FPWID-QVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (919)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~-~p~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 742 (919)
.+.+..|+.+|+.+.......- .-+++ .+++.++.+++.. +.+++..|+.+|..++.
T Consensus 665 --------------------~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 665 --------------------EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLS 723 (2102)
T ss_pred --------------------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHc
Confidence 1235567888888886433221 22233 3678888888764 78999999999999886
Q ss_pred HHHHHHHcCCCCCCCHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC--C-CHHHHHHHHHHHHHH
Q 002465 743 SAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL--L-DEGQVRSIVDEIKQV 818 (919)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~--~-~~~~~~~i~~~l~~~ 818 (919)
.... ..++ -...++.+++.+... .++.+..+..+|..+.+..... + .--+....+..+...
T Consensus 724 ~~e~--------------~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~ 788 (2102)
T PLN03200 724 DPEV--------------AAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788 (2102)
T ss_pred CchH--------------HHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH
Confidence 5321 1111 234578888888654 5678889999998887553321 0 000112233344444
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-ccccc----hhhHHH---HHHhHhhhh
Q 002465 819 ITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT-FKAAF----LPFFDE---LSSYLTPMW 890 (919)
Q Consensus 819 l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~-~~~~~----~~~~~~---l~~~~~~~~ 890 (919)
|+. .|.| ......+.+.+..+++. .|..| +..+.+ =+..+..++
T Consensus 789 L~~--------------~~~~--------------~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 789 LNS--------------TDLD--------------SSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL 840 (2102)
T ss_pred Hhc--------------CCcc--------------hhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH
Confidence 443 2211 11223478899999985 22333 222222 133333444
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 002465 891 GKDKTAEERRIAICIFDDVAE 911 (919)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~ 911 (919)
. ...+....-|+-+++.++.
T Consensus 841 ~-~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 841 A-EGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred H-cCChHHHHHHHHHHHHHhc
Confidence 3 3456666778888877765
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.2e-16 Score=181.18 Aligned_cols=601 Identities=16% Similarity=0.192 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc--HHHHHhHHHHHHHHHHhhcCC-CcChhHHHHHHHHHHHHHhhhc
Q 002465 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAE-SLEEGTRHLAIEFVITLAEARE 306 (919)
Q Consensus 230 p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~li~~ll~~~~~~-~~~~~vr~~al~~l~~l~~~~~ 306 (919)
..+.+.+...+.+++|..|++++-.|..++.+.. +...-+.++|...+...+++. ....++....+...+.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 3566777888889999999999888877776553 223334556666666666432 22233333334444444331
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCC-------CCcccccCCCCC--ccccCCcccchHHHHHHHHHHHcCCCcchHH
Q 002465 307 RAPGMMRKLPQFINRLFAILMSMLLDIE-------DDPLWHSAETED--EDAGESSNYSVGQECLDRLAIALGGNTIVPV 377 (919)
Q Consensus 307 ~~~~~~~~~~~~~~~li~~l~~~l~~~~-------~~~~w~~~~~~~--ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 377 (919)
+.-+.++..|+..+.... ++.+...+..-. -+.+..+ ..+-|..++..+|..++
T Consensus 895 ----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~is----TYKELc~LASdl~qPdL--- 957 (1702)
T KOG0915|consen 895 ----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKIS----TYKELCNLASDLGQPDL--- 957 (1702)
T ss_pred ----------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcch----HHHHHHHHHhhcCChHH---
Confidence 122334444444443211 111111111000 0111111 23456677777774333
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
++.++.-.-.+..|.-|.+|...++.++...++.+.+|++.++|.+++.--||++.||.+.....+.+..+-...+ +.|
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y 1036 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEY 1036 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHH
Confidence 3344443444678999999999999999999999999999999999999999999999999888888887766656 889
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHhh
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL---TALASVADSS 534 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l---~al~~l~~~~ 534 (919)
+.+|+..|+..+.+ ..++||+++|.||..+++.-+.+.+...++.+...++...++-+..||+.+= .+++.++-..
T Consensus 1037 ~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 8899999999999999999877777788999999999999988888887754 4555554333
Q ss_pred HH-----HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCch
Q 002465 535 QE-----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPT 609 (919)
Q Consensus 535 ~~-----~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~ 609 (919)
.+ .-...++.++|.|..- ..-....++|.-++.++..+++..|+ .+.||++++++.+++..+.- + +.+
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~---gims~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s~l-E--~~v 1188 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDE---GIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNAYSEL-E--PQV 1188 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHHcccc-c--hHH
Confidence 22 2345778888887742 11123566888899999999999884 69999999999999865521 1 111
Q ss_pred hHHH-HHHHHHHHH------HhcCCccc---------------chhhhhHHHHHhcccCCCccccCCCCCcccccCCCcc
Q 002465 610 TSYM-LQAWARLCK------CLGQDFLP---------------YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDS 667 (919)
Q Consensus 610 ~~~~-~~~~~~l~~------~~g~~~~~---------------~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (919)
..|+ +++...=.. .-+..-.| .+..++|.+.+.+..
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~---------------------- 1246 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG---------------------- 1246 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------
Confidence 1221 111000000 00001111 223334444433321
Q ss_pred cchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHH
Q 002465 668 METITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA 747 (919)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 747 (919)
+.+ +..|..+..+++.++..+|..+.||...++..+++.+.| .++.+|++-+.++|.|++..
T Consensus 1247 ---------sVg-----l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S--- 1308 (1702)
T KOG0915|consen 1247 ---------SVG-----LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS--- 1308 (1702)
T ss_pred ---------cCC-----CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC---
Confidence 001 234778889999999999999999999999999999998 59999999999999999875
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002465 748 IEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKR 827 (919)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~ 827 (919)
.+++...+....+..++.. .++... .++..+.. |....+.+-..+.+.++..+.-...... |.
T Consensus 1309 ---------s~dq~qKLie~~l~~~l~k--~es~~s---iscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee~--Ka 1371 (1702)
T KOG0915|consen 1309 ---------SPDQMQKLIETLLADLLGK--DESLKS---ISCATISN-IANYSQEMLKNYASAILPLIFLAMHEEE--KA 1371 (1702)
T ss_pred ---------ChHHHHHHHHHHHHHHhcc--CCCccc---hhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHHH--HH
Confidence 3445566655544433321 222112 22222222 2111111112344445554443333210 00
Q ss_pred HHH-------HH-hcCCC----CChHhhhhhhhh--hhhHHHHHHHHHHHHHHHHHHccccc-hhhHHHHHHhHhhhhcC
Q 002465 828 ERA-------ER-AKAED----FDAEESELIKEE--NEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGK 892 (919)
Q Consensus 828 ~~~-------~~-~~~~~----~d~~~~~~~~e~--~e~e~~l~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~~~~~~~~ 892 (919)
.+. +- .++.. .-.+.-..+.|. .++-..++..++..+...+....... .|++-.+.+.+..-+ .
T Consensus 1372 ~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L-~ 1450 (1702)
T KOG0915|consen 1372 NQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTL-N 1450 (1702)
T ss_pred HHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHh-h
Confidence 000 00 00000 000000001111 11123455556666666665555443 377777777777766 4
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhh
Q 002465 893 DKTAEERRIAICIFDDVAEQCREA 916 (919)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~ 916 (919)
++.++.+...+..++..++-|+..
T Consensus 1451 GRiwdGKe~iLKAl~~~~~a~~~~ 1474 (1702)
T KOG0915|consen 1451 GRIWDGKEEILKALASAFEAGLAD 1474 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHhHHH
Confidence 678888888888888777777653
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=1.2e-14 Score=176.13 Aligned_cols=679 Identities=15% Similarity=0.165 Sum_probs=401.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCC-CCcc
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD-SFLW 93 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~-~~~w 93 (919)
.+..++.-+.+++...+..|-..|..+.. ++ ...++.|+.+|.++ +++.|..|+-.|..+-.... ...|
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~ 136 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVG 136 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhh
Confidence 34456666667888888887766666554 22 23467889998654 78999999999988765420 1112
Q ss_pred cCCCHHHHHHHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcccCCCCcch-----hHHHHHHhhcCCChhHHHHHHHH
Q 002465 94 PRLSLHTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPE-----LLPFMFQCVSSDSVKLQESAFLI 166 (919)
Q Consensus 94 ~~l~~~~~~~ik~~ll~~l~~e--~~~~vr~~~~~~i~~i~~~~~~~~~w~~-----ll~~l~~~~~s~~~~~r~~al~~ 166 (919)
..+- .....-..|+..+.+. .+..++..++.++..++.+. .+.|.. .+|.+.++++++++..+..|..+
T Consensus 137 ~~I~--v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~--en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~a 212 (2102)
T PLN03200 137 SKIF--STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST--DGFWSATLEAGGVDILVKLLSSGNSDAQANAASL 212 (2102)
T ss_pred hhhh--hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc--cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 1110 0122234556666542 13346666677888887643 345643 78999999999999999999998
Q ss_pred HHHhhhhhhhhccc-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHH--hhhHHHHHHHHHHH----
Q 002465 167 FAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTES---- 239 (919)
Q Consensus 167 l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~p~il~~l~~~---- 239 (919)
+..++...++.... .-...+|.+.+.|.+..+..+|..|..+|.++...- ....... ..-+|.+++.+...
T Consensus 213 La~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~ 290 (2102)
T PLN03200 213 LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEF 290 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhh
Confidence 88887654332111 113457888888876436799999999999988642 1112222 23366666665421
Q ss_pred Hhc-CChHHHHHHHHHHHHHHccCcHHHHHhHHHH----------------HHHHHHhhcCCCcChhHH----HHHHHHH
Q 002465 240 LNN-GNEATAQEALELLIELAGTEPRFLRRQLVDV----------------VGSMLQIAEAESLEEGTR----HLAIEFV 298 (919)
Q Consensus 240 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l----------------i~~ll~~~~~~~~~~~vr----~~al~~l 298 (919)
++. .+...+..+.++|..++..... +.+++..+ +.+++...+.+ ++.++ ..+...|
T Consensus 291 ~~~~~~~~Lqe~AvwALsNIcgg~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~--~~~~~~i~~~~v~~~L 367 (2102)
T PLN03200 291 MQGEFAQALQENAMGALANICGGMSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSS--AESTRAFDPTVIEQIL 367 (2102)
T ss_pred hccccchHHHHHHHHHHHHHhCCchh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCc--hhhhhhccccccHHHH
Confidence 111 1234578899999998876533 22222211 22233333221 22222 1345667
Q ss_pred HHHHhhhcccchhhhcchhhHHHHHHHHHH---------hhcCCCCCc---ccccCCCCCccccCCcccchHHHHHHHHH
Q 002465 299 ITLAEARERAPGMMRKLPQFINRLFAILMS---------MLLDIEDDP---LWHSAETEDEDAGESSNYSVGQECLDRLA 366 (919)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~li~~l~~---------~l~~~~~~~---~w~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (919)
..+++++. |. ...+.+.+.+-. .+.+.+-.+ .+... ........+..++..++
T Consensus 368 V~Llr~k~--p~------~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~-------~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 368 VKLLKPRD--TK------LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM-------ATADVQEELIRALSSLC 432 (2102)
T ss_pred HHHhCCCC--Cc------hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhcc-------CCHHHHHHHHHHHHHHh
Confidence 77777521 11 111222222211 111100000 00000 00112334455555555
Q ss_pred HHcCCCcch-----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhH-HHHHHHHHhhCCCCCHhHHHHHHH
Q 002465 367 IALGGNTIV-----PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAIN 440 (919)
Q Consensus 367 ~~~~~~~~~-----~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~ 440 (919)
..- .... ...+|.+.+++.+.+...|..++..++.++.+..+...... ...+|.+++.|..+++.+|..|+|
T Consensus 433 ~~~--~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAaw 510 (2102)
T PLN03200 433 CGK--GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSAT 510 (2102)
T ss_pred CCC--HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 221 1111 11356667788888899999999999999887654322222 247888999999999999999999
Q ss_pred HHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhH
Q 002465 441 AIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (919)
Q Consensus 441 ~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v 519 (919)
+|++++.+ .+..+... ....+|.+++.|.+ .+++++..|+++|.+++...... .++.++.++...++.+
T Consensus 511 AL~NLa~~-~~qir~iV~~aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~--------~I~~Lv~LLlsdd~~~ 580 (2102)
T PLN03200 511 VLWNLCCH-SEDIRACVESAGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAA--------TISQLTALLLGDLPES 580 (2102)
T ss_pred HHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchh--------HHHHHHHHhcCCChhH
Confidence 99999975 33332222 24789999999998 78999999999999998765433 2355667788888899
Q ss_pred HHHHHHHHHHHHHhhHHH-HH-Hh--HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhh-hhHHHHHHH
Q 002465 520 QEGALTALASVADSSQEH-FQ-KY--YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR-DDAKQVMEV 594 (919)
Q Consensus 520 ~~~~l~al~~l~~~~~~~-~~-~~--~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~-~~~~~i~~~ 594 (919)
+..++.+++.+....... +. .. -...+|.|.+++.+. ....+..|..++..+...-. +... -.....++.
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg----s~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpP 655 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS----KEETQEKAASVLADIFSSRQ-DLCESLATDEIINP 655 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHH
Confidence 999999999987755432 11 11 135778888888653 23467778888887754221 1111 112234555
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccc-h-hhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhc
Q 002465 595 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPY-M-SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 672 (919)
Q Consensus 595 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-l-~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (919)
++.+... .+...+..+..+++++......+-..+ . ..++|.+++.++...
T Consensus 656 LV~LLss---~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d------------------------- 707 (2102)
T PLN03200 656 CIKLLTN---NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS------------------------- 707 (2102)
T ss_pred HHHHHhc---CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC-------------------------
Confidence 5554442 223455556667777776332221122 3 246888888885311
Q ss_pred cCCeeeeeechhHHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHc
Q 002465 673 LGDKRIGIKTSVLEEKATACNMLCCYADELKEG--FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK 750 (919)
Q Consensus 673 ~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~--~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 750 (919)
.+-+..|+.+|..++..-... +. -+..++.+.+.+... ++.+|+.|+.+|..|++....
T Consensus 708 ------------~~v~e~Al~ALanLl~~~e~~~ei~--~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~~---- 768 (2102)
T PLN03200 708 ------------IEVAEQAVCALANLLSDPEVAAEAL--AEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFPV---- 768 (2102)
T ss_pred ------------hHHHHHHHHHHHHHHcCchHHHHHH--hcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCCh----
Confidence 112345777777776644221 11 123345555566644 689999999999999876421
Q ss_pred CCCCCCCHHHHHH--HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q 002465 751 GLAPGRNESYVKQ--LSDFIIPALVEALHK-EPDTEICASMLDSLNECIQI 798 (919)
Q Consensus 751 ~~~~~~~~~~~~~--~~~~~~~~l~~~l~~-e~~~~~~~~~~~~l~~~i~~ 798 (919)
.+.... .....+.+++..|.. +.+.....++++.+..+.+.
T Consensus 769 -------~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 769 -------DDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred -------hHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 111111 223456678888864 34555555688888888875
No 25
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.79 E-value=2.8e-14 Score=155.22 Aligned_cols=542 Identities=15% Similarity=0.152 Sum_probs=308.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccC-----C
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~-----l 96 (919)
.....+...+++|+..++.||+.|+++.+ +++ |...|..+..+ ..+-.+|..|++.+||.+.++ |.. +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 44456677899999999999999999999 666 55777777766 467899999999999999997 753 5
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 002465 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (919)
.++....||..++..+.+ .+..+.-+.+.+++.+|+.++| ..||.++|.+...+++.|...-...+.++..+.+....
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 666666999999999987 5677777999999999999999 89999999999999998887778888888888877653
Q ss_pred hcc------ccHHHHHHHHHHhhCCC-CChHHHH-----------HHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHH
Q 002465 177 TLT------PHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (919)
Q Consensus 177 ~~~------~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~ 238 (919)
.++ ...+.+.+++...+... .....+. .+++.+..+... .-...++.+.++++..+..+..
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~~F~k 235 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFMEHFCK 235 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHH
Confidence 322 22333333333333221 1111111 133333322221 1112346677888888888888
Q ss_pred HHhcCChHHHHH-------------HHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcC---CCcChhHHHHHHHHHHHHH
Q 002465 239 SLNNGNEATAQE-------------ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA---ESLEEGTRHLAIEFVITLA 302 (919)
Q Consensus 239 ~l~~~~~~~~~~-------------a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~---~~~~~~vr~~al~~l~~l~ 302 (919)
.+...++..+.. .++.+.-+...+|..+.+++-..++.++..++. +..-+.+...++.++....
T Consensus 236 lls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~ 315 (947)
T COG5657 236 LLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVI 315 (947)
T ss_pred HHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhh
Confidence 777545544442 445555666677787887766666666665532 1122334445566666655
Q ss_pred hh--hcccchhhhcchhhHHHHHHHHHHhhc--CCCCCcccccCCCC--Cc---cccCCcccchHHHHHHHHHHHcCCCc
Q 002465 303 EA--RERAPGMMRKLPQFINRLFAILMSMLL--DIEDDPLWHSAETE--DE---DAGESSNYSVGQECLDRLAIALGGNT 373 (919)
Q Consensus 303 ~~--~~~~~~~~~~~~~~~~~li~~l~~~l~--~~~~~~~w~~~~~~--~e---d~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (919)
++ ++..+-......+.+.+++..++.... ..+|.++|..+..+ .+ .+-+...+..+...+..+-..++ +-
T Consensus 316 k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~-~i 394 (947)
T COG5657 316 KYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG-RI 394 (947)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-hH
Confidence 52 111111111112344455555443322 23334455432211 00 01122334456666666666666 66
Q ss_pred chHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCC----CHhHHHHHH-HHHHH
Q 002465 374 IVPVASEQLPAYLAAPE----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HPRVRWAAI-NAIGQ 444 (919)
Q Consensus 374 ~~~~l~~~l~~~l~~~~----~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~----~~~vr~~a~-~~L~~ 444 (919)
+.+.+...+.+....++ .....++....| +....-..+....+..-..+.+.+-++ +++++.... ..+..
T Consensus 395 ~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g-~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~ 473 (947)
T COG5657 395 AVGHELTVIESEATTPNILDEARQLFAAYASFG-LGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTF 473 (947)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheec
Confidence 67777777777777662 122223322223 222111222233333333333333332 344433322 12111
Q ss_pred hhhhhchh--HHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCC-hhHH
Q 002465 445 LSTDLGPD--LQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-QMVQ 520 (919)
Q Consensus 445 l~~~~~~~--~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~-~~v~ 520 (919)
-......+ ...-+..+.+-..+....|. .--.+|.+....+....-.-. ....-+++++-.+++...+.. ...+
T Consensus 474 r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~~e~ 551 (947)
T COG5657 474 RNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSLEER 551 (947)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchhHHH
Confidence 11111111 00111122222222222220 012334444444444332221 122456666666666666554 5678
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcC-CcccchhhhHHHHHHHHHHh
Q 002465 521 EGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 521 ~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~lr~~ai~~l~~l~~ 577 (919)
+..+.+++.++...++...|....+++.+.+++.... ++....+-...++.++.++.
T Consensus 552 ~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 552 EFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988999999999886532 33333333344555555543
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.77 E-value=1.2e-15 Score=157.42 Aligned_cols=591 Identities=15% Similarity=0.133 Sum_probs=357.1
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
.+...++. .+++ ....|..+++.|..-...+. ....|..++|.++..-. +...|...+..+..+.....
T Consensus 169 ~v~rllLk-vKNG-~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~L------eDqerhl~vk~idr~Ly~ld 237 (975)
T COG5181 169 DVYRLLLK-VKNG-GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSREL------EDQERHLVVKLIDRLLYGLD 237 (975)
T ss_pred hHHHHHhh-cccC-CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhhh------hhhhhHhHHHHHHHHHHhcc
Confidence 34444443 3454 78899999998876554432 12234455554443221 23345555666666655555
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 002465 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 264 ~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
....||+..|+-..-.++- +.+...|...-+.+.+++.. .. +...+.. | .++..
T Consensus 238 dl~~pyvhkILvVv~plli--ded~~~r~~g~eii~nL~~~---~G-----l~~~vs~--------m-----rpDi~--- 291 (975)
T COG5181 238 DLKVPYVHKILVVVGPLLI--DEDLKRRCMGREIILNLVYR---CG-----LGFSVSS--------M-----RPDIT--- 291 (975)
T ss_pred cccccceeeEEEEeecccc--CccHHHhcccHHHHHHHHHH---hc-----cceeeee--------c-----cCCcc---
Confidence 5555665544322222221 33455565556666666662 10 0000000 0 01010
Q ss_pred CCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHH
Q 002465 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (919)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~ 422 (919)
..+.-.++....+...++.++|- +.++|++.....|. +|+.|+.++....+|++-.+-...+|+..++..
T Consensus 292 -----~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 292 -----SKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred -----cccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 01112456777888899999884 55667777777766 899999999999999998777777999999999
Q ss_pred HHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHH
Q 002465 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (919)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (919)
+..++.|.+..||-.++.+++.+++..+|.- ...++.++..|-+..+. .-...-.+-..|.+.++.-+.++..-.|-.
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 9999999999999999999999999887744 35566666666665544 112222233333444444445444445567
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChh
Q 002465 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (919)
Q Consensus 503 ~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~ 582 (919)
..+..++..+++++.+.+...+..........+..-..+.+++.|.+++.+.....-..+..-.+...+-..+++..|.
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~- 519 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD- 519 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC-
Confidence 7889999999999988887766666555544444434567889988887654321111112222234455566666662
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcC-Ccccc-hhhhhHHHHHhcccCCCccccCCCCCccc
Q 002465 583 KFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPY-MSVVMPPLLQSAQLKPDVTITSADSDNEI 660 (919)
Q Consensus 583 ~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~-l~~i~~~ll~~~~~~~~~~~~~~~~~~~~ 660 (919)
+.+...+++... +..+|.|.-...+..++...+|. +|..- -..++..++..++.+..
T Consensus 520 ------~~v~~kil~~~~---De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~------------ 578 (975)
T COG5181 520 ------PRVSRKILEYYS---DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT------------ 578 (975)
T ss_pred ------hHHHHHHHhhcc---CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc------------
Confidence 234444444333 34566777777777788777774 45533 34566777777753211
Q ss_pred ccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHH
Q 002465 661 EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (919)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 740 (919)
.+..- -. +.+....+++-...||++.++..+++.+... .++||..|+.+.+.|
T Consensus 579 ----t~~~i-----l~-----------------~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl 631 (975)
T COG5181 579 ----TVGLI-----LP-----------------CFSTVLVSLEFRGKPHLSMIVSTILKLLRSK-PPDVRIRAADLMGSL 631 (975)
T ss_pred ----cccEE-----Ee-----------------cccceeeehhhccCcchHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 00000 01 2222333444457899999999999999865 789999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHH
Q 002465 741 LRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQVI 819 (919)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~-~~~~~~~~i~~~l~~~l 819 (919)
....+.+ | . ...+..+=..|.+.+ .+.++++...++.+++.+....+-. |.| -+..|+..+..+|
T Consensus 632 ~~vlk~c---~------e---~~~l~klg~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~mqp-Pi~~ilP~ltPIL 697 (975)
T COG5181 632 AKVLKAC---G------E---TKELAKLGNILYENL-GEDYPEVLGSILKAICSIYSVHRFRSMQP-PISGILPSLTPIL 697 (975)
T ss_pred HHHHHhc---c------h---HHHHHHHhHHHHHhc-CcccHHHHHHHHHHHHHHhhhhcccccCC-chhhccccccHhh
Confidence 8877532 1 1 112222222344455 4558999999999999988776642 433 3567888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccchh-hHHHHHHhHhhhhcCCCCHHH
Q 002465 820 TASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEE 898 (919)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~ 898 (919)
++..+. +..+..++++.+++..++...+ --..+.=-+...|+ +-+.+.
T Consensus 698 rnkh~K------------------------------v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKei 746 (975)
T COG5181 698 RNKHQK------------------------------VVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEI 746 (975)
T ss_pred hhhhHH------------------------------HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHH
Confidence 874432 3345667777777776663221 11113333333442 345677
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 002465 899 RRIAICIFDDVAEQCREA 916 (919)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~ 916 (919)
|..|..+|+-|.+..|+.
T Consensus 747 RR~A~~tfG~Is~aiGPq 764 (975)
T COG5181 747 RRNATETFGCISRAIGPQ 764 (975)
T ss_pred HHhhhhhhhhHHhhcCHH
Confidence 777777777777777664
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.2e-13 Score=153.99 Aligned_cols=491 Identities=15% Similarity=0.215 Sum_probs=328.6
Q ss_pred cchhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCc
Q 002465 141 WPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (919)
Q Consensus 141 w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (919)
-|+++-.++++.++. .++.|.+|..-|+.|++..++.+.||+.+++|.+..+=-|| +..|+.+.......++..
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP-~~~Vq~aM~sIW~~Li~D---- 1028 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDP-DKKVQDAMTSIWNALITD---- 1028 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCC-cHHHHHHHHHHHHHhccC----
Confidence 578888888988765 67899999999999999999999999999999999999998 999999888888777754
Q ss_pred chhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc-HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHH
Q 002465 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (919)
Q Consensus 220 ~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l 298 (919)
.......++..|++-|...+.+..+++|..+|-+|.+++...+ ..+.++++.+...+++.. +|..+.||..|=.+.
T Consensus 1029 -~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvm--DDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1029 -SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVM--DDIKESVREAADKAA 1105 (1702)
T ss_pred -hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 2345566677788777777788899999999999999998765 456778888888888877 356788887764443
Q ss_pred HHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHH
Q 002465 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (919)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (919)
..+.+ +.-.+++... -..+ +.+...+
T Consensus 1106 ~~lsK----------------------l~vr~~d~~~-------------------~~~~-------------~~~l~~i 1131 (1702)
T KOG0915|consen 1106 RALSK----------------------LCVRICDVTN-------------------GAKG-------------KEALDII 1131 (1702)
T ss_pred HHHHH----------------------HHhhhcccCC-------------------cccH-------------HHHHHHH
Confidence 33333 1111111100 0011 2333334
Q ss_pred HHHHH-HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhH-HHHHHHHHHHhhhhhc------
Q 002465 379 SEQLP-AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV-RWAAINAIGQLSTDLG------ 450 (919)
Q Consensus 379 ~~~l~-~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v-r~~a~~~L~~l~~~~~------ 450 (919)
+|++- +.+-|.-..+|..++..+..++...+..+.+|++.++|.++.....-+|.| -+.++++.+.=.+.+.
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~ 1211 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASA 1211 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 44432 233367788999999999999999999999999999999999887655544 3334444322111110
Q ss_pred --------------hhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCC
Q 002465 451 --------------PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (919)
Q Consensus 451 --------------~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~ 516 (919)
+.+....+.+++|.+.+.+...-.-..|..++..+..+...++. .+.||...++..++..+++.+
T Consensus 1212 aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~-emtP~sgKll~al~~g~~dRN 1290 (1702)
T KOG0915|consen 1212 AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS-EMTPYSGKLLRALFPGAKDRN 1290 (1702)
T ss_pred hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc-ccCcchhHHHHHHhhcccccc
Confidence 11112347788888888887633445678888899999988985 488999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhHH-HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHH
Q 002465 517 QMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (919)
Q Consensus 517 ~~v~~~~l~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (919)
..+|...-.|.|.++....+ .+..++..++..+.. +. +. .+..+..++..|+.... +.+..|+..++|++
T Consensus 1291 esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~---k~-es----~~siscatis~Ian~s~-e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1291 ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG---KD-ES----LKSISCATISNIANYSQ-EMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc---cC-CC----ccchhHHHHHHHHHhhH-HHHHhhHHHHHHHH
Confidence 99999999999999987664 666666665544432 21 11 12223444444554443 77889999999987
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC-cccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccC
Q 002465 596 MSLQGSQMETDDPTTSYMLQAWARLCKCLGQD-FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (919)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (919)
.=.... .+....+---..|..+... |.. ..-|++.++..++.....+ +.|
T Consensus 1362 FLa~~e---e~Ka~q~Lw~dvW~e~vsg-gagtvrl~~~eiLn~iceni~nn-------------------~~w------ 1412 (1702)
T KOG0915|consen 1362 FLAMHE---EEKANQELWNDVWAELVSG-GAGTVRLYLLEILNLICENITNN-------------------ESW------ 1412 (1702)
T ss_pred HHHHhH---HHHHHHHHHHHHHHHhCCC-CcchhhhhHHHHHHHHHHHhccc-------------------hHH------
Confidence 642221 1111111112233333222 223 3338888887777665321 112
Q ss_pred CeeeeeechhHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHH
Q 002465 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 675 ~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~-p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (919)
. -|..+...+-.++........ |++-++.+.+...+... .++=++....++...+..+
T Consensus 1413 ----~-------lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1413 ----K-------LRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAG 1471 (1702)
T ss_pred ----H-------HHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHh
Confidence 2 244566666666666655544 88888887777666543 3444555555555444433
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.2e-14 Score=153.00 Aligned_cols=490 Identities=15% Similarity=0.206 Sum_probs=337.9
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc-chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW-PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w-~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 178 (919)
....++...-+.|.+..+..+|+......+.++.+....+.- -.++..+.+.+..+.+.++.....|+..+.-.....
T Consensus 52 ~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~- 130 (569)
T KOG1242|consen 52 NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL- 130 (569)
T ss_pred HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-
Confidence 455666677778887778889998888888888876543222 245566666667777788888888887665443322
Q ss_pred cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 002465 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ-EALELLIE 257 (919)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~-~a~~~l~~ 257 (919)
....+.+.+.+.+..+ ...-|..+...+..++... ....+.+. .++..+...+++.+...+. .+.-++..
T Consensus 131 --~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~----~i~~~~~~--~~l~~l~~ai~dk~~~~~re~~~~a~~~ 201 (569)
T KOG1242|consen 131 --SGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGL----GIESLKEF--GFLDNLSKAIIDKKSALNREAALLAFEA 201 (569)
T ss_pred --CHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCc----HHhhhhhh--hHHHHHHHHhcccchhhcHHHHHHHHHH
Confidence 3455666667777765 6677777777777766543 22222221 5677777777776555444 45666666
Q ss_pred HHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 002465 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (919)
Q Consensus 258 l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~ 337 (919)
.....+..+.||+..+++.++.... +....+|..|.+....+... .+ ..-+..++|.++..+.+.
T Consensus 202 ~~~~Lg~~~EPyiv~~lp~il~~~~--d~~~~Vr~Aa~~a~kai~~~---~~------~~aVK~llpsll~~l~~~---- 266 (569)
T KOG1242|consen 202 AQGNLGPPFEPYIVPILPSILTNFG--DKINKVREAAVEAAKAIMRC---LS------AYAVKLLLPSLLGSLLEA---- 266 (569)
T ss_pred HHHhcCCCCCchHHhhHHHHHHHhh--ccchhhhHHHHHHHHHHHHh---cC------cchhhHhhhhhHHHHHHH----
Confidence 6666677788999998888887664 45788999998888777763 11 112344455444433221
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHh
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 415 (919)
.| .....+.+.++.++...+. +..+|.++|.+.+-+.|..+++|.++..++-.+.+.... +.
T Consensus 267 kW-------------rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~d 330 (569)
T KOG1242|consen 267 KW-------------RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PD 330 (569)
T ss_pred hh-------------hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HH
Confidence 23 2345677888888776652 246778889999999999999999999998888776554 55
Q ss_pred HHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC-CC
Q 002465 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-TP 494 (919)
Q Consensus 416 l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~-~~ 494 (919)
+..++|.++.++.|++-.+... ...|+. ..+-..+..+-+.-++|.+.+.+.+ .+...+..++..+.+++.-. ++
T Consensus 331 I~~~ip~Lld~l~dp~~~~~e~-~~~L~~--ttFV~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 331 IQKIIPTLLDALADPSCYTPEC-LDSLGA--TTFVAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred HHHHHHHHHHHhcCcccchHHH-HHhhcc--eeeeeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCH
Confidence 7788899999999998665543 344433 2233333345688899999999998 78888999999999999887 55
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHH
Q 002465 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (919)
Q Consensus 495 ~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~ 574 (919)
..+.||++.+++.+-..+.+..|++|..+..+++.+....|.. +++...|.+.+.+.... ....|..+.+.++.
T Consensus 407 ~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k---~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEK---SLVDRSGAAQDLSE 480 (569)
T ss_pred HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccch---hhhhhHHHhhhHHH
Confidence 6789999999999999999999999999999999999988854 44888888888764322 12233344555666
Q ss_pred HHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhccc
Q 002465 575 VGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL 645 (919)
Q Consensus 575 l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~ 645 (919)
+....|.+.+..+.++++....... .+..++...+..+.-+-...|..|.+|+..+++.+++.+..
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~-----~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVL-----IDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhcc-----chhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 6555555555555555554443211 11123444444455566667889999999999999999863
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6e-14 Score=147.92 Aligned_cols=522 Identities=16% Similarity=0.161 Sum_probs=333.1
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCc---chhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHH
Q 002465 115 ESAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFL 190 (919)
Q Consensus 115 e~~~~vr~~~~~~i~~i~~~~~~~~~w---~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~ 190 (919)
++...+|.....+...... ...| ..+.|..-+.+++. +...|+......+.++.+... ..+....++..+.
T Consensus 28 d~~~~v~~~ml~a~~~~~~----~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~-~d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAIN----QHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI-VDPRPISIIEILL 102 (569)
T ss_pred CcchhhHHhHHHHHHHHHH----hhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc-cCcchhHHHHHHH
Confidence 3455566554444333322 1233 45667777777654 557787777777887776532 2334567888888
Q ss_pred HhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHH-HHHh
Q 002465 191 NCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF-LRRQ 269 (919)
Q Consensus 191 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~ 269 (919)
+.+.-+ +..+|.+...|+..+....... ... .++..+.+.++...-..+..+...+..+....+.. +.+
T Consensus 103 ~~~~tp-s~~~q~~~~~~l~~~~~~~~~~-~~~-------~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~- 172 (569)
T KOG1242|consen 103 EELDTP-SKSVQRAVSTCLPPLVVLSKGL-SGE-------YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE- 172 (569)
T ss_pred HhcCCC-cHHHHHHHHHHhhhHHHHhhcc-CHH-------HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh-
Confidence 888887 9999999999998877654321 111 33444455555556667777777777777655422 211
Q ss_pred HHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccc
Q 002465 270 LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 349 (919)
Q Consensus 270 ~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~ 349 (919)
..++..+.....++. ...-|+.+.-.....+.+ -+ ....+|+-.++|.++....+..
T Consensus 173 -~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~--Lg----~~~EPyiv~~lp~il~~~~d~~--------------- 229 (569)
T KOG1242|consen 173 -FGFLDNLSKAIIDKK-SALNREAALLAFEAAQGN--LG----PPFEPYIVPILPSILTNFGDKI--------------- 229 (569)
T ss_pred -hhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHh--cC----CCCCchHHhhHHHHHHHhhccc---------------
Confidence 123333333333221 222233232222233331 11 2456799999999988775442
Q ss_pred cCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCC
Q 002465 350 GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 429 (919)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d 429 (919)
...+.++..+...+...++. .-.+.++|.+...+....|+.+.+++..+|.++...++.....+++++|.+.+.+.|
T Consensus 230 --~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D 306 (569)
T KOG1242|consen 230 --NKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD 306 (569)
T ss_pred --hhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc
Confidence 23567777788877777653 333333433333334449999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHH--HHhcCCCccccCcHHHHHHH
Q 002465 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN--FSENCTPEILTPYLDGIVSK 507 (919)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~--l~~~~~~~~l~~~l~~i~~~ 507 (919)
.++.||.++..++-+++..... .-+..++|.+++++.| ++..+. .+...|.. |+.. .-.|-+.-+++.
T Consensus 307 T~~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~d-p~~~~~-e~~~~L~~ttFV~~----V~~psLalmvpi 376 (569)
T KOG1242|consen 307 TKPEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDALAD-PSCYTP-ECLDSLGATTFVAE----VDAPSLALMVPI 376 (569)
T ss_pred CCHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcC-cccchH-HHHHhhcceeeeee----ecchhHHHHHHH
Confidence 9999999999999999887653 3477899999999999 553442 22222221 2222 223678888888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhh--HHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhh
Q 002465 508 LLVLLQNGKQMVQEGALTALASVADSS--QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR 585 (919)
Q Consensus 508 L~~~l~~~~~~v~~~~l~al~~l~~~~--~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~ 585 (919)
|.+.+...+...++.+...++.++.-. +..+.||++.++|.+...+.+. ..++|.-+..+++.+.+.+|...|
T Consensus 377 L~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~----~PEvR~vaarAL~~l~e~~g~~~f- 451 (569)
T KOG1242|consen 377 LKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA----VPEVRAVAARALGALLERLGEVSF- 451 (569)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhhcc-
Confidence 888999889999999999999999988 5678999999999999987542 456777788889888888886666
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCC
Q 002465 586 DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDD 665 (919)
Q Consensus 586 ~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (919)
+...+.+...... +..+..+...... ++.+++..-..++..+++.++......-.
T Consensus 452 ---~d~~p~l~e~~~~--~k~~~~~~g~aq~---l~evl~~~~v~~~~~~~~~~~a~~~~~~~----------------- 506 (569)
T KOG1242|consen 452 ---DDLIPELSETLTS--EKSLVDRSGAAQD---LSEVLAGLGVEKVEDILPEILANASSVLI----------------- 506 (569)
T ss_pred ---cccccHHHHhhcc--chhhhhhHHHhhh---HHHHHhcccchHHHHHHHHHHHHHhhccc-----------------
Confidence 3333333332211 0111122333333 44445555556777888888877653210
Q ss_pred cccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHh
Q 002465 666 DSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSA 736 (919)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~ 736 (919)
++ .++.++ +.++..+-...+..+.||+.++++.+++.+.+. ++.+|..+.+.
T Consensus 507 -~~----------~~~dg~-------~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~-de~~~~~~~~~ 558 (569)
T KOG1242|consen 507 -DE----------RIRDGV-------IWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN-DEKGRDTALEA 558 (569)
T ss_pred -hh----------hhccCe-------eehhhccchhhhHHhHHHHHHHHHHHHHHhhhc-CCccccchhhh
Confidence 00 000000 012223333456678999999999999888754 66777665543
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.2e-14 Score=144.56 Aligned_cols=357 Identities=17% Similarity=0.153 Sum_probs=260.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 002465 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (919)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 460 (919)
....+..+++-..|.+++.++.+++.+.+.....|+..+++.++.+++|++.+||+.||..+-++++....++ -.|++.
T Consensus 47 L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~ 125 (675)
T KOG0212|consen 47 LAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNE 125 (675)
T ss_pred HHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHH
Confidence 5567778888888889999999998888776667999999999999999999999999999999999988877 689999
Q ss_pred hHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccc-cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHH
Q 002465 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (919)
Q Consensus 461 ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l-~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~ 539 (919)
++..+.+...| ++..||. ++..+.+++.....+.- .-.++.+++.|-..+...++..|...++++..+-..-+-+|.
T Consensus 126 iFdvL~klsaD-sd~~V~~-~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 126 IFDVLCKLSAD-SDQNVRG-GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHhcC-Ccccccc-HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999 7788865 45667777766543322 346899999999999999999999999999999998888999
Q ss_pred HhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 002465 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWAR 619 (919)
Q Consensus 540 ~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 619 (919)
.|++.+++.|++.+.+. ..++|..+=.+++.+.+.+..+--.-..+++++.+..-.. +++..++..++.++..
T Consensus 204 ~yl~~~ldGLf~~LsD~----s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~---ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDS----SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ---SSEPEIQLKALTWIQE 276 (675)
T ss_pred hcchHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc---CCcHHHHHHHHHHHHH
Confidence 99999999999998542 2335544444566655544322111134455555544211 2333477788999999
Q ss_pred HHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHH
Q 002465 620 LCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYA 699 (919)
Q Consensus 620 l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~ 699 (919)
+.+..|.++.+|++.++..++.++..++... -|..|...-+.+.
T Consensus 277 fV~i~g~~~l~~~s~il~~iLpc~s~~e~~~------------------------------------i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 277 FVKIPGRDLLLYLSGILTAILPCLSDTEEMS------------------------------------IKEYAQMVNGLLL 320 (675)
T ss_pred HhcCCCcchhhhhhhhhhhcccCCCCCcccc------------------------------------HHHHHHHHHHHHH
Confidence 9999999999999999999999986533210 0122222222222
Q ss_pred HHhccccc---ccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 002465 700 DELKEGFF---PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEAL 776 (919)
Q Consensus 700 ~~~~~~~~---p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 776 (919)
.-++.... =-+..+++++.+.+.++ ..+-|-++..-+..|.+.. +.++-.+.+.+++.+++.+
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~-------------p~ql~~h~~~if~tLL~tL 386 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKA-------------PGQLLVHNDSIFLTLLKTL 386 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhC-------------cchhhhhccHHHHHHHHhh
Confidence 22221111 12346788888888865 5777888887777766553 2345566778889999988
Q ss_pred hcCCCHHHHHHHHHHHHHHHHH
Q 002465 777 HKEPDTEICASMLDSLNECIQI 798 (919)
Q Consensus 777 ~~e~~~~~~~~~~~~l~~~i~~ 798 (919)
.+. +.+|+.-++.-++.+.+.
T Consensus 387 sd~-sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 387 SDR-SDEVVLLALSLLASICSS 407 (675)
T ss_pred cCc-hhHHHHHHHHHHHHHhcC
Confidence 655 446777777777776544
No 31
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.3e-09 Score=120.75 Aligned_cols=488 Identities=15% Similarity=0.177 Sum_probs=287.4
Q ss_pred HHHHHcc--CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcc-hHhHHHHHHHHHHHHHhcccC
Q 002465 61 LAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES-AKSISKKLCDTVSELASNILP 137 (919)
Q Consensus 61 l~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~-~~~vr~~~~~~i~~i~~~~~~ 137 (919)
+.+++.. .+++..|..|-..|.+.=+. |. ....+++.+.++. +-.||.+++--+.+.....++
T Consensus 6 l~~~~~~T~d~d~~~R~~AE~~L~q~~K~----------pg----Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~ 71 (1010)
T KOG1991|consen 6 LLQIFRATIDSDAKERKAAEQQLNQLEKQ----------PG----FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWS 71 (1010)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcC----------Cc----HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCC
Confidence 4444443 56799999999999876433 11 2235666666554 455788888777777665555
Q ss_pred CCC--------c----chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHH
Q 002465 138 ENG--------W----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (919)
Q Consensus 138 ~~~--------w----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (919)
.+. . +-+...++..+.......|..-..++..|... .+-.+++.+++.+...|+++ +...-..|
T Consensus 72 ~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs~-~~~~vy~a 147 (1010)
T KOG1991|consen 72 SHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQSQ-DANHVYGA 147 (1010)
T ss_pred ccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcCc-chhhHHHH
Confidence 331 1 11334444444444455665555666565543 22247999999999999997 77778899
Q ss_pred HHHHHHHHHhhc-C-cc----hhhHHhhhHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHccC-cHHHH--HhHHHH
Q 002465 206 LNAVINFIQCLT-S-SA----DRDRFQDLLPLMMRTLTESLNNGNEAT---AQEALELLIELAGTE-PRFLR--RQLVDV 273 (919)
Q Consensus 206 ~~~l~~l~~~~~-~-~~----~~~~~~~~~p~il~~l~~~l~~~~~~~---~~~a~~~l~~l~~~~-~~~~~--~~~~~l 273 (919)
+-|+..++...+ + .+ -...+..++|.+++.....+..++... .+..++.+-.++... |..+. ..+...
T Consensus 148 Ll~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W 227 (1010)
T KOG1991|consen 148 LLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSW 227 (1010)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHH
Confidence 999999987654 1 11 223456778888888888887665442 334444444444322 32221 234455
Q ss_pred HHHHHHhhcCC------CcChh---------HHHHHHHHHHHHHhhhcccchhh----hc-----chhhHHHHHHHHHHh
Q 002465 274 VGSMLQIAEAE------SLEEG---------TRHLAIEFVITLAEARERAPGMM----RK-----LPQFINRLFAILMSM 329 (919)
Q Consensus 274 i~~ll~~~~~~------~~~~~---------vr~~al~~l~~l~~~~~~~~~~~----~~-----~~~~~~~li~~l~~~ 329 (919)
++.++.+++.+ +.+++ .+.=|+..+..+.+.... |+.. +. ..++...++...++.
T Consensus 228 ~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~-~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~ 306 (1010)
T KOG1991|consen 228 MELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGS-PSLVVPEYKEFAQMFLKNFAQGILEVFLKI 306 (1010)
T ss_pred HHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCC-ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665432 12333 345578888888774211 1111 11 123344455555544
Q ss_pred hcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC----------CC---CH-----
Q 002465 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA----------AP---EW----- 391 (919)
Q Consensus 330 l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------~~---~~----- 391 (919)
+..-.. ..|. .-++-..++..+.+....+.+++.+-|++.-.++ +. -|
T Consensus 307 l~~~~~-~~yl-------------s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~ 372 (1010)
T KOG1991|consen 307 LEQWRQ-QLYL-------------SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY 372 (1010)
T ss_pred HHHHHh-cccC-------------CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH
Confidence 422111 1222 1123334455555544444555555555543321 11 12
Q ss_pred --------------HHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCC--------CCCHhHHHHHHHHHHHhhhhh
Q 002465 392 --------------QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--------DPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 392 --------------~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~--------d~~~~vr~~a~~~L~~l~~~~ 449 (919)
.-+.||..++-.++..-++ ..++.+++.+...+. ..+++-+..|+..+|.++..+
T Consensus 373 EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 373 EYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred HHHHhcCchhcccCCCcHHHHHHHHHHHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Confidence 1345777777776666533 344455544444333 347889999999999999765
Q ss_pred chhH--HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHH-hcCCCccccCcHHHHHHHHHHHhh-cCChhHHHHHHH
Q 002465 450 GPDL--QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS-ENCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALT 525 (919)
Q Consensus 450 ~~~~--~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~-~~~~~~~l~~~l~~i~~~L~~~l~-~~~~~v~~~~l~ 525 (919)
...- ....-.-+++-++..+++ +.-..|.+||+.+..++ ..++.. ..+...++...+.+. +....||-.|.-
T Consensus 450 ~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~lPV~VeAal 525 (1010)
T KOG1991|consen 450 LKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNELPVRVEAAL 525 (1010)
T ss_pred ccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCcCchhhHHHH
Confidence 4321 012223445556666777 67789999999999998 445422 456677777777777 667789999999
Q ss_pred HHHHHHHhhH---HHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 002465 526 ALASVADSSQ---EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (919)
Q Consensus 526 al~~l~~~~~---~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (919)
|+..++.... ..+.++++.+|+-|+.+.+..+++. + -.++..+....+ +...||+.++++.+.
T Consensus 526 ALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~---L----t~vme~iV~~fs-eElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 526 ALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD---L----TNVMEKIVCKFS-EELSPFAVELCQNLA 591 (1010)
T ss_pred HHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH---H----HHHHHHHHHHHH-HhhchhHHHHHHHHH
Confidence 9999998876 4488999999999988875433222 1 234555544455 456677666666544
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.6e-09 Score=116.69 Aligned_cols=744 Identities=13% Similarity=0.159 Sum_probs=384.1
Q ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc--
Q 002465 58 TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN-- 134 (919)
Q Consensus 58 ~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~-- 134 (919)
+..|..++.. +.+..+++.+.-+|..++...+-..|. ....+..+...+.-.+ .+.+.+|+.+.+++..+...
T Consensus 95 ~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 95 LNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHcCCC
Confidence 3455555543 778889999999999999887666798 3445666655444333 36889999999999988763
Q ss_pred ccCCCCcchhHHHH---HHhhcCC----ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHH
Q 002465 135 ILPENGWPELLPFM---FQCVSSD----SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALN 207 (919)
Q Consensus 135 ~~~~~~w~~ll~~l---~~~~~s~----~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 207 (919)
..|....|...... .+.+.+. ........+.+|..++..+|.. .++.+...++..+... +..++..+++
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~---li~sl~e~lL~i~~~s-~v~v~~~~~q 246 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP---LIKSLCEVLLNITTES-PVLVLLEVLQ 246 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH---HHHHHHHHHHhhcccc-hHHHHHHHHH
Confidence 11223344333322 2222221 1122233455555555555444 5677888888888876 8899999999
Q ss_pred HHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChH-HHHHHHHHHH----HHHccCcHHHHHhHHHHHHHHHHhhc
Q 002465 208 AVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA-TAQEALELLI----ELAGTEPRFLRRQLVDVVGSMLQIAE 282 (919)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~-~~~~a~~~l~----~l~~~~~~~~~~~~~~li~~ll~~~~ 282 (919)
|+..+....+..... .+.-.++..+.+.-.+.+.. ....-+.++. .++....+.....++.+++.++.+..
T Consensus 247 ~l~~lf~~~~~~l~a----~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~ 322 (1176)
T KOG1248|consen 247 CLHSLFKKHPTALAA----ELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILE 322 (1176)
T ss_pred HHHHHHhcCCCcchH----HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHh
Confidence 999998876532111 22224455554433222211 1112222222 22222333334445556665555443
Q ss_pred CCCcChhHHHHHHHHHHHHHhhhcccch----hhh------------cchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 002465 283 AESLEEGTRHLAIEFVITLAEARERAPG----MMR------------KLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (919)
Q Consensus 283 ~~~~~~~vr~~al~~l~~l~~~~~~~~~----~~~------------~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ 346 (919)
. ..+++-..+-.++..+.+. .+. .+. ....++=+++..++..+.+.. ++.....-+.-
T Consensus 323 s--~~~e~~q~a~q~l~~il~~---sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s-~~~l~~~L~~l 396 (1176)
T KOG1248|consen 323 S--LIEELVQAASQSLKEILKE---SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELS-GPELTKTLEGL 396 (1176)
T ss_pred c--ccHHHHHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhc-CHHHHHHHHHH
Confidence 2 2344444444444444442 111 000 011122222222222222211 00000000000
Q ss_pred ---ccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHhcHHHHHHhHHHH
Q 002465 347 ---EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP----EWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (919)
Q Consensus 347 ---ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~----~~~~r~aal~~l~~i~~~~~~~~~~~l~~l 419 (919)
-..++........++++.-..++||+.++.. +|.-. ...+. .|- +=.|..-+.+. .+.-+...+
T Consensus 397 ~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~-lpLnl-~~~s~~~~RsWL-----LPvLR~~i~~A--~La~F~~~i 467 (1176)
T KOG1248|consen 397 CDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTI-LPLNL-HAESLSFTRSWL-----LPVLRDYIIGA--SLAFFTEYI 467 (1176)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHH-cchhc-cccccccchhHh-----HHHHHHhhccC--cHHHHHHHH
Confidence 0011111112234455555555554433321 11100 00000 121 00000000000 000111122
Q ss_pred HHHHHh------hCCCCC--H-hHHHHHHH---HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHH
Q 002465 420 LSMVLN------SFRDPH--P-RVRWAAIN---AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (919)
Q Consensus 420 ~~~l~~------~l~d~~--~-~vr~~a~~---~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~ 487 (919)
+|.... .+.++. + .++.-... .|-.+|.. +-+. ..-+..+.+.+...+.. .+..|...|.+|..
T Consensus 468 vpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~--~~elr~~Ic~sL~~ 543 (1176)
T KOG1248|consen 468 VPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK--RPELRETICNSLRM 543 (1176)
T ss_pred HHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--chHhHHHHHHHHHH
Confidence 222211 122221 1 11211211 22333332 2233 33477888888888886 56999999999999
Q ss_pred HHhcCC--------CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH-HHHHHhHhhhhHHHHHHHhhc--
Q 002465 488 FSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA-- 556 (919)
Q Consensus 488 l~~~~~--------~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~-- 556 (919)
+++... .+.+..|-.++++.+++.-......-+ ..+........... .-|..-...+...|.+.+...
T Consensus 544 Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as 622 (1176)
T KOG1248|consen 544 LVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELAS 622 (1176)
T ss_pred HHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhc
Confidence 998741 235667888899999998766543333 23333322222222 112222223333333333221
Q ss_pred -CCcc-cchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcc----c
Q 002465 557 -TDKS-NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL----P 630 (919)
Q Consensus 557 -~~~~-~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~----~ 630 (919)
.+.. ........++.+..++.....+....+. .+.+...+ . .+.-++.-....+..++.. .... .
T Consensus 623 ~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~----~--~~~~vQkK~yrlL~~l~~~--~s~~~~~~q 693 (1176)
T KOG1248|consen 623 DLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN----S--SSTKVQKKAYRLLEELSSS--PSGEGLVEQ 693 (1176)
T ss_pred cchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc----c--ccHHHHHHHHHHHHHHhcC--CchhhHHHH
Confidence 1111 1112223344444444333322222222 22222211 0 1112333444455555554 2222 2
Q ss_pred chhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccH
Q 002465 631 YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI 710 (919)
Q Consensus 631 ~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~ 710 (919)
.+..+...+.+.++.. ..-.+..++++|..+...++..+..++
T Consensus 694 ~i~~I~n~L~ds~qs~-------------------------------------~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 694 RIDDIFNSLLDSFQSS-------------------------------------SSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HHHHHHHHHHHHHhcc-------------------------------------chHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334444444443221 112366789999999999997778888
Q ss_pred HHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002465 711 DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLD 790 (919)
Q Consensus 711 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~ 790 (919)
++.++.++-... ..+..-|+.|+.||..+.. .......| ..+ ....++.+++.+...+..+...-+... +-
T Consensus 737 ~k~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~-i~~~~d~g----~e~--~~~~lnefl~~Isagl~gd~~~~~as~-Iv 807 (1176)
T KOG1248|consen 737 PKLIPEVILSLK-EVNVKARRNAFALLVFIGA-IQSSLDDG----NEP--ASAILNEFLSIISAGLVGDSTRVVASD-IV 807 (1176)
T ss_pred HHHHHHHHHhcc-cccHHHHhhHHHHHHHHHH-HHhhhccc----ccc--hHHHHHHHHHHHHhhhcccHHHHHHHH-HH
Confidence 888877666665 4588899999999988884 11112222 122 233444444444444444433333333 77
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002465 791 SLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT 870 (919)
Q Consensus 791 ~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~ 870 (919)
++..++...+..++.+.+.++++.+...|.+. -.+++.++..++-.++..
T Consensus 808 ai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------------------------------sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 808 AITHILQEFKNILDDETLEKLISMVCLYLASN------------------------------SREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------------------------------CHHHHHHHHHHHHHHHHc
Confidence 88888988888888899999999888888651 234788999999999999
Q ss_pred cccc-chhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhcC
Q 002465 871 FKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK 919 (919)
Q Consensus 871 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (919)
.+.. ..+|.+.++|.+..++ ++.....|.-.-.+|..++.-+|.+.++
T Consensus 858 ~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 858 FPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred CCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9975 5789999999999987 4557888999999999999999987653
No 33
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.7e-12 Score=130.15 Aligned_cols=464 Identities=16% Similarity=0.209 Sum_probs=287.6
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhh--cch
Q 002465 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (919)
Q Consensus 40 ~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~--e~~ 117 (919)
.+|..+|+++++. +++| ....+++....+.....+|+..+|+.+... +..+++.....+|+.+++-++. +..
T Consensus 2 ~~A~~~L~~FQ~S-~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKS-NDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCCC-hHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 4688999999994 5555 778888887778889999999999999987 8889888888888866554432 133
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh---------------hccccH
Q 002465 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---------------TLTPHL 182 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~---------------~~~~~~ 182 (919)
+.+|.+++-+++.++-+. ..|.+-++.+++..++..+. ...-+.+|..+.+...+ ++.+..
T Consensus 76 ~~i~tQL~vavA~Lal~~---~~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM---PEWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh---HhhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 489999999999998865 37988777777777776665 33445556666554321 122344
Q ss_pred HHHHHHHHHhhCCCC--ChHHHHHHHHHHHHHHHhhcCcchhhHHhh---hH----------------------------
Q 002465 183 KHLHAVFLNCLTNSN--NPDVKIAALNAVINFIQCLTSSADRDRFQD---LL---------------------------- 229 (919)
Q Consensus 183 ~~l~~~l~~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~---~~---------------------------- 229 (919)
..++..+..++++.+ +..+-...+++++++...-.- ..+.+.. ++
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhh
Confidence 566666777776651 245666778888777662110 0011100 00
Q ss_pred ---------------HHHHHHHHHH-HhcCChHHHHHHHHHHHHHHccCcHHHHH---hHHHHHHHHHHhhcCCCcChhH
Q 002465 230 ---------------PLMMRTLTES-LNNGNEATAQEALELLIELAGTEPRFLRR---QLVDVVGSMLQIAEAESLEEGT 290 (919)
Q Consensus 230 ---------------p~il~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~~~li~~ll~~~~~~~~~~~v 290 (919)
+.+++...+. ....+.+.....++.|.++.+.+...+.. ..-.++..++-... +.+.++
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~--h~~~ev 307 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG--HNDTEV 307 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc--CCchhh
Confidence 1111111111 11234444455555555555433221111 11223333333332 445688
Q ss_pred HHHHHHHHHHHHhh--hcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHH
Q 002465 291 RHLAIEFVITLAEA--RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA 368 (919)
Q Consensus 291 r~~al~~l~~l~~~--~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~ 368 (919)
....+.+|..+.+. +.+.......+.+|+.+++..+......+.+..... ++.++....+....+.+..++..
T Consensus 308 ie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~-----Ee~~~f~~fR~~v~dvl~Dv~~i 382 (559)
T KOG2081|consen 308 IEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP-----EEESEFFEFRLKVGDVLKDVAFI 382 (559)
T ss_pred hhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc-----cchhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999885 223333445567888999998888877654211110 11111222344566777778888
Q ss_pred cCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 369 LGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
+|....+..+...+.+ +.+.|+.-+|++..+..++......-.+.++.++..+.+. ....+ +|+.++..+|.++++
T Consensus 383 igs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p~Q~~-~~~ts~ll~g~~~ew 458 (559)
T KOG2081|consen 383 IGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-PEQAP-LRYTSILLLGEYSEW 458 (559)
T ss_pred hCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-ccchh-HHHHHHHHHHHHHHH
Confidence 8876665555444443 4678999999999999999887655556667777766653 23334 999999999999999
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHH---HHHHHHHhhcCChhHHHHHHH
Q 002465 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI---VSKLLVLLQNGKQMVQEGALT 525 (919)
Q Consensus 449 ~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i---~~~L~~~l~~~~~~v~~~~l~ 525 (919)
+.... ..+..++..+...+.. . +....++.++..++..+.. .+.+.++.+ +..+....-+ ..... .+.
T Consensus 459 ~~~~p--~~le~v~~~~~~~~~~-~--~~as~~a~~~~~i~~~c~~-~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~ 529 (559)
T KOG2081|consen 459 VEQHP--ELLEPVLRYIRQGLQL-K--RLASAAALAFHRICSACRV-QMTCLIPSLLELIRSLDSTQIN--EEAAC-LLQ 529 (559)
T ss_pred HHhCc--HHHHHHHHHHHHHhhh-c--chhHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhcc--HHHHH-HHH
Confidence 87653 5677777778888877 2 3777888888888877652 233444444 3333333333 22222 555
Q ss_pred HHHHHHHhhH
Q 002465 526 ALASVADSSQ 535 (919)
Q Consensus 526 al~~l~~~~~ 535 (919)
.++.++...+
T Consensus 530 ~~s~i~~~lp 539 (559)
T KOG2081|consen 530 GISLIISNLP 539 (559)
T ss_pred HHHHHHhcCC
Confidence 5666655554
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=4e-12 Score=131.01 Aligned_cols=412 Identities=16% Similarity=0.166 Sum_probs=288.3
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHccCcHHHH
Q 002465 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (919)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~-~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 267 (919)
+..++.|. -.+-|.+|..-+-.++..+-+..+... +..+++ ...+...+++...|++++-.+...+-..+..-.
T Consensus 5 i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~~----i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 5 IARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYDQ----IRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH
Confidence 44667776 777888888778777776533323332 334444 334445555555666666666555332322233
Q ss_pred HhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 002465 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (919)
Q Consensus 268 ~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~e 347 (919)
+|+..+++..+..++ +.+..+|..|++.+..+++..+ .....|.+.++..+.+...+.+.
T Consensus 80 ~Y~~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~------------ 139 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ------------ 139 (675)
T ss_pred HHHHHhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc------------
Confidence 477888887777775 4578899999999999999521 23456788888888877665421
Q ss_pred cccCCcccchHHHHHHHHHHHcCCC----cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHH
Q 002465 348 DAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (919)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l 423 (919)
..+.+.+.++++.+....+ .-++.++|.+.+.+...++..|...+.++..+-...+-.+..|++.+++.+
T Consensus 140 ------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 140 ------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred ------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHH
Confidence 1233667888877664322 246789999999999999999999999999888877777889999999999
Q ss_pred HhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHH
Q 002465 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (919)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (919)
+..|+|+++.||..+-.+++.+..........--.++.++.++..++. +++.++..|...+..|+...++. +.+|+..
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s~ 291 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLSG 291 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhhh
Confidence 999999999999999999998887665433112567899999999999 89999999999999999988854 6699999
Q ss_pred HHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhHHHHH---HhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhh
Q 002465 504 IVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQ---KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (919)
Q Consensus 504 i~~~L~~~l~~~~~-~v~~~~l~al~~l~~~~~~~~~---~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~ 579 (919)
++..+++++.+... .+++.+...-+.+....+.... --+..++..+...+.+ +...-|..+++.+..+-...
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhhC
Confidence 99999999988776 4666665555555444443221 2345788888887754 23345777888888877666
Q ss_pred ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcc
Q 002465 580 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (919)
Q Consensus 580 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~ 644 (919)
+. ....+...++..++.-++ +.+|.+....+..++.+|..-. .+.+-.++..+++...
T Consensus 368 p~-ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~~s~~---~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 368 PG-QLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASICSSSN---SPNLRKFLLSLLEMFK 425 (675)
T ss_pred cc-hhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHHhcCcc---cccHHHHHHHHHHHHh
Confidence 63 455677788887776444 2445566666667777766433 2233344445555553
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=5.1e-10 Score=127.22 Aligned_cols=476 Identities=13% Similarity=0.132 Sum_probs=300.0
Q ss_pred cCCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhhccCCCCc
Q 002465 17 LGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFL 92 (919)
Q Consensus 17 ~~~d~~-~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (919)
+|.|.. -+..++..+.++|-+.||-..-++..+.+.+|+.. ...++.++ +++||.+|-+|.-.+.++-.
T Consensus 62 ~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------ 134 (746)
T PTZ00429 62 MGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------ 134 (746)
T ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------
Confidence 345554 55667777888899999999999999888778743 23334443 27889999999887766532
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002465 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (919)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (919)
++..+.+-..+.+++. ++++.||+.++-++..+.+.....-.-..+++.+.+++.++++.+...|+.+|..+.+
T Consensus 135 -----~~i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 135 -----SSVLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred -----HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4455666666677776 4799999999999999877432111123467788888899999999999999999987
Q ss_pred hhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHH
Q 002465 173 YIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (919)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~ 252 (919)
..+..+. .....+..+++.+.+- ++=-+...++++.. +.+. +.... -.+++.+...+++.++.+.-+++
T Consensus 209 ~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~----~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 209 YGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESA----ETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred hCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHH----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 6554332 2233334445555543 44445555565533 3222 11112 24566666667788899999999
Q ss_pred HHHHHHHccC-cHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhc
Q 002465 253 ELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (919)
Q Consensus 253 ~~l~~l~~~~-~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~ 331 (919)
.++..+.... +..+...+..+...++.+.+ .+.++|..++..+..++.. .| ..+..-+...+....
T Consensus 278 k~il~l~~~~~~~~~~~~~~rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~---~P-------~lf~~~~~~Ff~~~~ 344 (746)
T PTZ00429 278 KVVANLASRCSQELIERCTVRVNTALLTLSR---RDAETQYIVCKNIHALLVI---FP-------NLLRTNLDSFYVRYS 344 (746)
T ss_pred HHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHH---CH-------HHHHHHHHhhhcccC
Confidence 9999887653 33333333344444555532 3578899999888877772 33 222222222222111
Q ss_pred CCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHH
Q 002465 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV 411 (919)
Q Consensus 332 ~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~ 411 (919)
+ +..+....|+.+..... +.-...++.-+.++..+.+...+..++.++|.++...+.
T Consensus 345 D---------------------p~yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~- 401 (746)
T PTZ00429 345 D---------------------PPFVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS- 401 (746)
T ss_pred C---------------------cHHHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-
Confidence 1 11234455555555554 444566777788888888999999999999999987654
Q ss_pred HHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--cCCCChHHHHHHHHHHHHHH
Q 002465 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 412 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l--~d~~~~~v~~~a~~al~~l~ 489 (919)
....++..++..+.+....+. .++..+..+....+. .+ +++.++..+ .+-.++..|....|.|+.++
T Consensus 402 ---~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~----~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~ 470 (746)
T PTZ00429 402 ---VAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPE----LL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYC 470 (746)
T ss_pred ---HHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCcc----HH---HHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence 344555666566655443333 456666666544332 11 455555433 22245788889999999998
Q ss_pred hcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHH
Q 002465 490 ENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSM 569 (919)
Q Consensus 490 ~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai 569 (919)
+..+ ..+.++..++.-+...+..||-.++.+...+....+.+..+ .+..++....+ +.....+|.+|.
T Consensus 471 ~~I~------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~--~~~d~DVRDRA~ 538 (746)
T PTZ00429 471 DFIE------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTT--HSDDPDVRDRAF 538 (746)
T ss_pred hhHh------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHh--cCCChhHHHHHH
Confidence 7553 24556666666666678899999999888887766644333 22233322222 223456888888
Q ss_pred HHHHHH
Q 002465 570 ECISLV 575 (919)
Q Consensus 570 ~~l~~l 575 (919)
.-...+
T Consensus 539 ~Y~rLL 544 (746)
T PTZ00429 539 AYWRLL 544 (746)
T ss_pred HHHHHH
Confidence 766655
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=1.4e-11 Score=141.56 Aligned_cols=482 Identities=20% Similarity=0.268 Sum_probs=322.0
Q ss_pred cCCChH-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhhccCCCCc
Q 002465 17 LGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFL 92 (919)
Q Consensus 17 ~~~d~~-~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (919)
+|.|.. .+.+++..+.+.|...|+-+.-++..+...+|+.. ....+.+. +++++.+|.+|...+.+..
T Consensus 36 ~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------- 107 (526)
T PF01602_consen 36 LGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR------- 107 (526)
T ss_dssp TT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------
T ss_pred cCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------
Confidence 455554 45566666778889999999999999888677633 44444454 3789999999999998864
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch-hHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002465 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (919)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (919)
+++..+.+...+.+.+.+ +++.||+.++.++..+.+.. | +..+. +++.+.+++.++++.++..|+.++..+
T Consensus 108 ----~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~-p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i- 179 (526)
T PF01602_consen 108 ----TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKD-P-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI- 179 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHC-H-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-
T ss_pred ----ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccC-H-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-
Confidence 366777777788888875 78999999999999998863 3 24344 799999999999999999999999988
Q ss_pred hhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHH
Q 002465 172 QYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (919)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a 251 (919)
+.-++......+.+++.+.+.+..+ ++-.+...++.+..+.... ...... ..+++.+...+++.++.+..++
T Consensus 180 ~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~-----~~~~~~--~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 180 KCNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME-----PEDADK--NRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HCTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS-----HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCC-----hhhhhH--HHHHHHHHHHhhccccHHHHHH
Confidence 3222322245677788888777777 8888888888887655431 111100 2344444545556678888888
Q ss_pred HHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhc
Q 002465 252 LELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (919)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~ 331 (919)
+.++..+..... .+..+++.+..++. +.+..+|..+++.+..++.. .+ +.+......++ .+.
T Consensus 252 ~~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~---~~-------~~v~~~~~~~~-~l~ 313 (526)
T PF01602_consen 252 IRLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQS---NP-------PAVFNQSLILF-FLL 313 (526)
T ss_dssp HHHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCH---CH-------HHHGTHHHHHH-HHH
T ss_pred HHHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhcc---cc-------hhhhhhhhhhh-eec
Confidence 888887655332 44566666666665 45788999999999999884 21 12211111111 221
Q ss_pred CCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcHH
Q 002465 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK 410 (919)
Q Consensus 332 ~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~ 410 (919)
. ++ +...+..+.+.+..++. +.-...+++.+..++ ...+...|..++..++.++...+
T Consensus 314 ~-~~---------------d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~- 372 (526)
T PF01602_consen 314 Y-DD---------------DPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP- 372 (526)
T ss_dssp C-SS---------------SHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG-
T ss_pred C-CC---------------ChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC-
Confidence 1 11 12244445555555553 333445666666667 34577899999999999988764
Q ss_pred HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 411 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
+.....++.+++.+...+..+...+...+..+....+. ....++..+++.+.+...+.++..++|.++.+.+
T Consensus 373 ---~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~-----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 373 ---PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE-----LREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp ---SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT-----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred ---chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh-----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 34455566666666666677777777777777655332 2345677777777665678899999999999988
Q ss_pred cCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHH
Q 002465 491 NCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSME 570 (919)
Q Consensus 491 ~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~ 570 (919)
..+. .. ....++..+.+.+...+..+|..++.++..+....+..- ..+.+.+.+.+.... +.....+|.+|.+
T Consensus 445 ~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~--~s~~~evr~Ra~~ 517 (526)
T PF01602_consen 445 LIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATE--DSSDPEVRDRARE 517 (526)
T ss_dssp HHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHH--S-SSHHHHHHHHH
T ss_pred cccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhcc--CCCCHHHHHHHHH
Confidence 7763 22 677788888888887888999999999999987665310 123455555555431 1335568999998
Q ss_pred HHHHHH
Q 002465 571 CISLVG 576 (919)
Q Consensus 571 ~l~~l~ 576 (919)
.+..+-
T Consensus 518 y~~ll~ 523 (526)
T PF01602_consen 518 YLRLLN 523 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887663
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=1.8e-11 Score=140.55 Aligned_cols=490 Identities=18% Similarity=0.239 Sum_probs=321.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhh-c-CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQ-Q-DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~-~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (919)
++.+.+.... .+...|+.+-+.+-.+.. . +.+......+..+. +++...|+++-..+....... ++.
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~---------~~~ 76 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHED---------PEL 76 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTS---------HHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcc---------hhH
Confidence 4555555544 466667666666544322 2 33322233333333 789999999999998886553 555
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccc
Q 002465 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (919)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (919)
.-.+-+.+.+-|.+ +++.+|..+-.+++.+... .-.+.+++.+.+++.++++.+|..|+.++..+.+..++.+..
T Consensus 77 ~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 77 LILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH
Confidence 55566777777775 6889999888898888643 355788999999999999999999999999999887664322
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (919)
. +++.+.+.+.|+ ++.|+.+|+.++..+ .. ....+..+++.+.+.+...+...+|-.+..+++++..++.
T Consensus 152 ~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 152 E---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp G---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred H---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 1 688888889887 899999999999888 22 1223336778888888888788899999999999988877
Q ss_pred cCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 002465 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (919)
Q Consensus 261 ~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~ 340 (919)
..+..... ..+++.+...+. +.+..++..++.++..+.. ....+..+++.+...+...+
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~-----------~~~~~~~~~~~L~~lL~s~~------ 280 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP-----------SPELLQKAINPLIKLLSSSD------ 280 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS-----------SHHHHHHHHHHHHHHHTSSS------
T ss_pred CChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc-----------chHHHHhhHHHHHHHhhccc------
Confidence 66554421 334444444433 2356677777776665544 12366778888888776321
Q ss_pred cCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHH
Q 002465 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (919)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~ 420 (919)
.+.+..+.+++..++...+ ..+. .....+.....+++..+|..++..+..++.. .....++
T Consensus 281 -----------~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~Il 341 (526)
T PF01602_consen 281 -----------PNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEIL 341 (526)
T ss_dssp -----------HHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHHH
T ss_pred -----------chhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhHH
Confidence 2244556666666654432 1222 1111122233488899999999999888764 3445567
Q ss_pred HHHHhhCCCC-CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccC
Q 002465 421 SMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (919)
Q Consensus 421 ~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (919)
+.+...+.+. ++.+|..++..++.++...++. ....++.+++.+.. ....+...+...+..++...+ +
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~-~---- 410 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNP-E---- 410 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHST-T----
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhh-ccccccchHHHHHHHHhhcCh-h----
Confidence 7777777444 7779999999999999877543 34566667777766 556777888888888887754 2
Q ss_pred cHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh
Q 002465 500 YLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~-~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~ 578 (919)
.-..++..|...+.+ ..+.++..++..+|..+...+. . .....++..+.+.+.. +...+|..++.++..+...
T Consensus 411 ~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 411 LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-ESAPDILRSLIENFIE----ESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-THHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-ccHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhh
Confidence 234567777777775 4577888888888887766654 0 0234444444444422 3345788888888887655
Q ss_pred hChhhhhhhHHHHHHHHHHH
Q 002465 579 VGKDKFRDDAKQVMEVLMSL 598 (919)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~l 598 (919)
.+.... .+.+++.+.+.
T Consensus 485 ~~~~~~---~~~i~~~~~~~ 501 (526)
T PF01602_consen 485 NPENEV---QNEILQFLLSL 501 (526)
T ss_dssp SCSTTH---HHHHHHHHHCH
T ss_pred CCchhh---HHHHHHHHHHH
Confidence 442222 23555555543
No 38
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.55 E-value=4.3e-11 Score=133.99 Aligned_cols=567 Identities=16% Similarity=0.165 Sum_probs=366.6
Q ss_pred hHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCC
Q 002465 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (919)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (919)
+-..|.....-++.++....+...-.+++|++.+.. ..+..+...+..=++.+....+. ..+...+.+.+.....+.
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~~e 171 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLATVE 171 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhHHH
Confidence 334455555666666665555445678999999999 66667777777777777776432 124556667777776665
Q ss_pred CChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc-HHHHHhHHHHHH
Q 002465 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVG 275 (919)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~li~ 275 (919)
...+|..++..+...+...+.. .....++| .+......+-...|..++..+.......+ ..+...+..++.
T Consensus 172 -et~vr~k~ve~l~~v~~~~~~~---~~~~~lv~----l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~ 243 (759)
T KOG0211|consen 172 -ETGVREKAVESLLKVAVGLPKE---KLREHLVP----LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQ 243 (759)
T ss_pred -HHHHHHHHHHHHHHHHHhcChH---HHHHHHHH----HHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHH
Confidence 7788999999999998876532 22233333 22322223233346667777777766555 444444444443
Q ss_pred HHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCccc
Q 002465 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY 355 (919)
Q Consensus 276 ~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~ 355 (919)
.+ . .+..+.+|..+..-++.++.. .++ ..-...++|....+..+ +.++.+
T Consensus 244 ~l---c--~d~~~~Vr~~~a~~l~~~a~~---~~~-----~~~~s~v~~~~~~L~~D-----------------dqdsVr 293 (759)
T KOG0211|consen 244 SL---C--QDDTPMVRRAVASNLGNIAKV---LES-----EIVKSEVLPTLIQLLRD-----------------DQDSVR 293 (759)
T ss_pred hh---c--cccchhhHHHHHhhhHHHHHH---HHH-----HHHHhhccHHHhhhhhc-----------------chhhHH
Confidence 32 2 255788898888888887773 111 11122233333332211 134677
Q ss_pred chHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhH
Q 002465 356 SVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (919)
Q Consensus 356 ~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v 434 (919)
.+|...+..+...+..+ .....+.+.+.+...+.+|++|+.....+..+....+. ........+.....++|....+
T Consensus 294 ~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~ 371 (759)
T KOG0211|consen 294 EAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEV 371 (759)
T ss_pred HHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhh
Confidence 78888888888888766 56666777778888899999999988877777665554 2334456777778889999999
Q ss_pred HHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh
Q 002465 435 RWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~-~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~ 513 (919)
|.++..-...++........ .-..+.++|.+.....| .+.+||...+..+..+....+.+ .-+..+.+.+...++
T Consensus 372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNLK 447 (759)
T ss_pred hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhcc
Confidence 99998888888877652110 22355678999888888 89999998888877776666643 234445566667778
Q ss_pred cCChhHHHHHHHHHHHHHHhhH-HHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHH
Q 002465 514 NGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (919)
Q Consensus 514 ~~~~~v~~~~l~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~ 592 (919)
+..+.++...+.-++.+-...+ .....+-+..+|.+..+-. +..+.+|...++.+..++...|.+.|.+...+
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~----d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~-- 521 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE----DLLWRVRLAILEYIPQLALQLGVEFFDEKLAE-- 521 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc----chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHH--
Confidence 8888899888866655443333 1233455677777776532 23677888889999999888875544443222
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhc
Q 002465 593 EVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 672 (919)
Q Consensus 593 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (919)
+...+- .+...+++..+...+..++..+|.. =+...++|.++.....+
T Consensus 522 --l~~~~l--~d~v~~Ir~~aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~-------------------------- 569 (759)
T KOG0211|consen 522 --LLRTWL--PDHVYSIREAAARNLPALVETFGSE--WARLEEIPKLLAMDLQD-------------------------- 569 (759)
T ss_pred --HHHhhh--hhhHHHHHHHHHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCc--------------------------
Confidence 222111 0123458888888999999999933 33456667666655321
Q ss_pred cCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCC
Q 002465 673 LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGL 752 (919)
Q Consensus 673 ~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 752 (919)
.+.. |.+-+.++..++..+|..+ +.+.+++.+..+..|. .++||-.++..|..+.+.....
T Consensus 570 ----~y~~-------R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~~----- 630 (759)
T KOG0211|consen 570 ----NYLV-------RMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDES----- 630 (759)
T ss_pred ----ccch-------hhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcchH-----
Confidence 1122 3334556778888888654 4567777777777765 7899999999999998876321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002465 753 APGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQI 798 (919)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~ 798 (919)
..+..+-++...+..+.+.+++..+..+++.+...
T Consensus 631 -----------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 631 -----------VRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred -----------HHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 11222223455666677888888888777766533
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.54 E-value=3.2e-09 Score=120.86 Aligned_cols=492 Identities=14% Similarity=0.155 Sum_probs=299.0
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCC
Q 002465 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 197 (919)
...+..+..+|+.+... ..-..+++.+..++.+++...|..+...+...++.-++. .--.++.|.+-++++
T Consensus 47 ~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaINtl~KDl~d~- 117 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAVNTFLQDTTNS- 117 (746)
T ss_pred HHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHHHHHHHHcCCC-
Confidence 33455555666666542 356779999999999999999988888887776654432 234567778888887
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHH
Q 002465 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (919)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l 277 (919)
++.+|..|+++++.+-. ..+++.++..+.+++.+.++-+|+.|.-++.++....+..+.. ..+++.+
T Consensus 118 Np~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L 184 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDL 184 (746)
T ss_pred CHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHH
Confidence 99999999998876442 2456678888888889999999999999999998877765421 1122233
Q ss_pred HHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccch
Q 002465 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (919)
Q Consensus 278 l~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~ 357 (919)
..++. +.+..|...|+..+..+.+. .|..+. .....+..++..+. +..+|. .
T Consensus 185 ~~LL~--D~dp~Vv~nAl~aL~eI~~~---~~~~l~----l~~~~~~~Ll~~L~---e~~EW~----------------Q 236 (746)
T PTZ00429 185 VELLN--DNNPVVASNAAAIVCEVNDY---GSEKIE----SSNEWVNRLVYHLP---ECNEWG----------------Q 236 (746)
T ss_pred HHHhc--CCCccHHHHHHHHHHHHHHh---CchhhH----HHHHHHHHHHHHhh---cCChHH----------------H
Confidence 33343 56788999999999999873 332111 22222333333322 222332 1
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHH
Q 002465 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (919)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~ 437 (919)
..+|+.+....+ . .+ .....++..+.+.+++.|+.|...
T Consensus 237 -i~IL~lL~~y~P-~----------------~~-----------------------~e~~~il~~l~~~Lq~~N~AVVl~ 275 (746)
T PTZ00429 237 -LYILELLAAQRP-S----------------DK-----------------------ESAETLLTRVLPRMSHQNPAVVMG 275 (746)
T ss_pred -HHHHHHHHhcCC-C----------------Cc-----------------------HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 133343332211 0 00 112356677777788899999999
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCCh
Q 002465 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (919)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~ 517 (919)
|+.++-.+.....+.........+-+.++..+. +.+.+|-.+...|..++...+ ..+.+++ ....-..+++ .
T Consensus 276 Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P-~lf~~~~----~~Ff~~~~Dp-~ 347 (746)
T PTZ00429 276 AIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQYIVCKNIHALLVIFP-NLLRTNL----DSFYVRYSDP-P 347 (746)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHHCH-HHHHHHH----HhhhcccCCc-H
Confidence 999998887665444334444455566666543 467899888888877777554 3333332 2222333444 4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 002465 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 518 ~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (919)
.+|...+..+..++.... ...++.-|...... ....++.+++.++|.++.. +...+..+++.+++
T Consensus 348 yIK~~KLeIL~~Lane~N------v~~IL~EL~eYa~d----~D~ef~r~aIrAIg~lA~k-----~~~~a~~cV~~Ll~ 412 (746)
T PTZ00429 348 FVKLEKLRLLLKLVTPSV------APEILKELAEYASG----VDMVFVVEVVRAIASLAIK-----VDSVAPDCANLLLQ 412 (746)
T ss_pred HHHHHHHHHHHHHcCccc------HHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHH
Confidence 589999999988875433 23344444444421 2335788899999998754 34557777787777
Q ss_pred HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCee
Q 002465 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (919)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (919)
+.... .+ +...++..+..+.+..+..+ +++.++..+..+ .+
T Consensus 413 ll~~~---~~-~v~e~i~vik~IlrkyP~~~------il~~L~~~~~~~-~i---------------------------- 453 (746)
T PTZ00429 413 IVDRR---PE-LLPQVVTAAKDIVRKYPELL------MLDTLVTDYGAD-EV---------------------------- 453 (746)
T ss_pred HhcCC---ch-hHHHHHHHHHHHHHHCccHH------HHHHHHHhhccc-cc----------------------------
Confidence 66532 12 33345566777766555431 345554433110 00
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 002465 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (919)
Q Consensus 678 ~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 757 (919)
...+.|..-++++|+++...++ .+.++..++..+.+. +..||-+.+.+..+++-..
T Consensus 454 -----~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f~~E-~~~VqlqlLta~vKlfl~~------------- 509 (746)
T PTZ00429 454 -----VEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTIMEH-EQRVQLAILSAAVKMFLRD------------- 509 (746)
T ss_pred -----ccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhhccC-CHHHHHHHHHHHHHHHhcC-------------
Confidence 0123466678888888765443 344554444444433 6789988777766665432
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHH
Q 002465 758 ESYVKQLSDFIIPALVEAL-HKEPDTEICASMLD 790 (919)
Q Consensus 758 ~~~~~~~~~~~~~~l~~~l-~~e~~~~~~~~~~~ 790 (919)
++..+.. +..+++.+ ..+.+++++.-++.
T Consensus 510 p~~~~~~----l~~vL~~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 510 PQGMEPQ----LNRVLETVTTHSDDPDVRDRAFA 539 (746)
T ss_pred cHHHHHH----HHHHHHHHHhcCCChhHHHHHHH
Confidence 2223333 33444444 34567788877664
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.5e-12 Score=132.68 Aligned_cols=360 Identities=17% Similarity=0.228 Sum_probs=247.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh-hccc-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchh
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (919)
.+...+.+.|.++..+..+...+..+...... -+.. ....++|.+..+|....++.++..|..+|.+++..-.. ..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse--~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE--QT 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh--hc
Confidence 44555556666666666666666555433111 0100 22367888888887544799999999999999875321 11
Q ss_pred hHH--hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH--HHHHHHHHhhcCCCcChhHHHHHHHHH
Q 002465 223 DRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFV 298 (919)
Q Consensus 223 ~~~--~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~li~~ll~~~~~~~~~~~vr~~al~~l 298 (919)
..+ ...+|. +..++.+++.+++..+.++|..++...+. ++.++. .++..++..+.+.+ .......+...+
T Consensus 146 ~~vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~L 219 (514)
T KOG0166|consen 146 KVVVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTL 219 (514)
T ss_pred cccccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHH
Confidence 111 233444 45556688999999999999999987654 444443 45666666665432 245666778888
Q ss_pred HHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHH
Q 002465 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (919)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (919)
+.+|+.+. | ++. -.....+
T Consensus 220 sNlcrgk~--P------~P~-----------------------------------------------------~~~v~~i 238 (514)
T KOG0166|consen 220 SNLCRGKN--P------SPP-----------------------------------------------------FDVVAPI 238 (514)
T ss_pred HHHHcCCC--C------CCc-----------------------------------------------------HHHHHHH
Confidence 88888421 1 000 0122234
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
+|.+..++.+.|..+..-|+++++.++.+..+.+.-.++ .+++.++..|..+++.|+..|+.++|+++.......+.-.
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi 318 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI 318 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH
Confidence 556666777888888888999999999888876655544 5789999999999999999999999998876555443334
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCc-HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~-l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
-...+|.+...+...+...+|+.|||+++++..+.. +.+... -..+++.|+.++++.+..+|..|..+++.+......
T Consensus 319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 668899999998853667799999999999988554 223222 236789999999999999999999999999887776
Q ss_pred HHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh
Q 002465 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 537 ~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~ 578 (919)
+...|+ ..+++.+..+| ...|. .+...+++++..+...
T Consensus 398 ~qi~yLv~~giI~plcdlL-~~~D~---~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLL-TCPDV---KIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHHHcCCchhhhhcc-cCCCh---HHHHHHHHHHHHHHHH
Confidence 666666 45788888888 33332 2344577787777543
No 41
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8e-11 Score=124.05 Aligned_cols=353 Identities=16% Similarity=0.187 Sum_probs=251.8
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC---Ccchh
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPEL 144 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~---~w~~l 144 (919)
+.++..+..+...+++++.+.. .+.+..-.+..+...+.+.|....++.++-.++-++..|++...... .-..-
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~---~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKER---NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCC---CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 5677778888889999988752 24455556667777888888866789999999999999998654322 12457
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchh
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (919)
+|.+.+++.+++..+++-|..+|+.++...+. ++.++ ..+++.++..+..+........+..+|++++..-...
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~--- 229 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS--- 229 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC---
Confidence 88999999999999999999999999976543 22211 2345555666666523367778889999999864211
Q ss_pred hHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHH
Q 002465 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (919)
Q Consensus 223 ~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l 301 (919)
..+ ..+..+++++..++.+.|+++...+++++..+....++.+.-.+. .+++.+..++.+ .+..++..|+..++.+
T Consensus 230 P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~--~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 230 PPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH--SSPKVVTPALRAIGNI 306 (514)
T ss_pred CcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC--CCcccccHHHhhccce
Confidence 111 234456777777788899999999999999999887776655444 566666666654 3455666666666665
Q ss_pred HhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHH
Q 002465 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (919)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (919)
+.. . ....+ ..++ .. .++.
T Consensus 307 vtG----~------d~QTq---------------------------------------~vi~--------~~----~L~~ 325 (514)
T KOG0166|consen 307 VTG----S------DEQTQ---------------------------------------VVIN--------SG----ALPV 325 (514)
T ss_pred eec----c------HHHHH---------------------------------------HHHh--------cC----hHHH
Confidence 441 0 00000 0000 11 2344
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh--
Q 002465 382 LPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (919)
Q Consensus 382 l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-- 457 (919)
+..++. ++.-..|..|++.++.|..|..+.+...+. .++|.++..++..+.++|..|+|++++++....++- ..|
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q-i~yLv 404 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ-IKYLV 404 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH-HHHHH
Confidence 445555 566679999999999999999887766655 689999999999999999999999999987655433 234
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
...+++.+...|.- .+.++...+..++.++.....
T Consensus 405 ~~giI~plcdlL~~-~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTC-PDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HcCCchhhhhcccC-CChHHHHHHHHHHHHHHHHHH
Confidence 34688999999966 778888888899998887654
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.45 E-value=1.2e-07 Score=104.14 Aligned_cols=679 Identities=15% Similarity=0.157 Sum_probs=344.5
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhh-cchHhHHHHHHHHHHHHHhcccCCC----Ccc
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNILPEN----GWP 142 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~-e~~~~vr~~~~~~i~~i~~~~~~~~----~w~ 142 (919)
++++.+|..|..-|+..- .+++.. ..|.+...+ +.+-..|+.+.-.+.......+..+ ..|
T Consensus 15 s~d~~vr~~AE~~l~qle----------~~~~f~----~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLE----------LTEGFG----VALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CCChhHHHHHHHHHhccc----------cchHHH----HHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 788999999999987742 233333 333333333 2344566666656665555433210 111
Q ss_pred ---------hhHHHHHHhhcCCChhHHHHHHHHHHHhhhh-hhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 002465 143 ---------ELLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (919)
Q Consensus 143 ---------~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (919)
.+...+.+.+.+++...|.+..+++..|+.. .|+ .|+++++.+.+++.+. +..--..|++++..+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~~-n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSSG-NENSIHGAMRVLAEL 155 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhcc-chhhhhhHHHHHHHH
Confidence 1334555666667778888888888888875 333 5999999999999986 777778899999888
Q ss_pred HHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHH-----HHHHHHHHccCcHH--------HHHhHHHHHHHHHH
Q 002465 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA-----LELLIELAGTEPRF--------LRRQLVDVVGSMLQ 279 (919)
Q Consensus 213 ~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a-----~~~l~~l~~~~~~~--------~~~~~~~li~~ll~ 279 (919)
................++.+.. ++..........|..+ +.....+++.+.+. +.+.+..++..+.+
T Consensus 156 ~~ev~~ee~~~~~~~~l~~m~~-~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 156 SDEVDVEEMFFVGPVSLAEMYR-IFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHHHHHHHhcccccchhhhhh-hhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654211000000111122211 1111111111222211 12222333333332 22333333333333
Q ss_pred hhcCCC-cChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCC---------C-CCcccccCCCCCcc
Q 002465 280 IAEAES-LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI---------E-DDPLWHSAETEDED 348 (919)
Q Consensus 280 ~~~~~~-~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~---------~-~~~~w~~~~~~~ed 348 (919)
.+...+ .+...|...+.++..+.+. .|.. ..++....++...+.+... . ......... |.|
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~n---fp~~---~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~--dsd 306 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVEN---FPSL---INPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARY--DSD 306 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHh---hHHh---hhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCccccc--CCc
Confidence 332222 2345677778888888874 3422 2233333333322222110 0 001111111 111
Q ss_pred ccCCcccch---HHHHHHH------HHHHcCCCcchHHHHHHHHH------------------hhCC--CCHHHHHHHHH
Q 002465 349 AGESSNYSV---GQECLDR------LAIALGGNTIVPVASEQLPA------------------YLAA--PEWQKHHAALI 399 (919)
Q Consensus 349 ~~~~~~~~~---a~~~l~~------l~~~~~~~~~~~~l~~~l~~------------------~l~~--~~~~~r~aal~ 399 (919)
.+....... ..+.+.. ++..+. + .+|.++..+.. +..+ +....|.++..
T Consensus 307 ~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~-~-~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd 384 (1005)
T KOG2274|consen 307 PEEKSVETLVIQIVEFLSTIVTNRFLSKTIK-K-NLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRD 384 (1005)
T ss_pred hhhhChHHhhhhHHHHHHHHHHHHHHHHHhh-h-hhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHH
Confidence 111111111 1122222 222222 1 12222222111 1111 12356666666
Q ss_pred HHHHHHHhcHHHHHHhHHHHHHHHH---------hhCC-CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 002465 400 ALAQIAEGCAKVMVKNLEQVLSMVL---------NSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (919)
Q Consensus 400 ~l~~i~~~~~~~~~~~l~~l~~~l~---------~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l 469 (919)
.+-.++..++. ..+..+....- ..++ ...+..+.+.++........ +.. ..++..++..+...+
T Consensus 385 ~~~~v~~~f~~---~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~-dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 385 LLLEVITTFGN---EGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DAN-DDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHhccc---hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cch-HHHHHHHHHHHHhhc
Confidence 66666655443 11111111111 1122 23456666666665554421 111 345666666666666
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHH
Q 002465 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPF 548 (919)
Q Consensus 470 ~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~-~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~ 548 (919)
.....|..-.++.+++..|.+...- ..+.+..++...+..+. +..+.+|..++.++...+ ...-+.++.+.++..
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~--~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVI--NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDG 534 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHH
Confidence 6545677777999999988877431 23566667776666654 345677877777766655 122355777888888
Q ss_pred HHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCc-hhHHHHHHHHHHHHHhcCC
Q 002465 549 LKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP-TTSYMLQAWARLCKCLGQD 627 (919)
Q Consensus 549 l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~ 627 (919)
|.++..+..+ .+-.-.+|+++.+++. .++.-...-..+.+.++.+.... ++|| +.+.+..+|..++. ....
T Consensus 535 L~qlas~~s~----evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~el~q-~~~~ 606 (1005)
T KOG2274|consen 535 LLQLASKSSD----EVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEELLQ-IAAN 606 (1005)
T ss_pred HHHHcccccH----HHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHHH-HHHh
Confidence 8877644222 2333356777766432 22222222233444444433211 2344 34444555555554 2334
Q ss_pred cccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccccc
Q 002465 628 FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF 707 (919)
Q Consensus 628 ~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~ 707 (919)
..|+-...+|.++..++...+
T Consensus 607 ~g~m~e~~iPslisil~~~~~----------------------------------------------------------- 627 (1005)
T KOG2274|consen 607 YGPMQERLIPSLISVLQLNAD----------------------------------------------------------- 627 (1005)
T ss_pred hcchHHHHHHHHHHHHcCccc-----------------------------------------------------------
Confidence 455666666666665543110
Q ss_pred ccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 002465 708 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 787 (919)
Q Consensus 708 p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~ 787 (919)
..+......|+..|..+++.. .++-.+.+...++|++.++.-...|.++...
T Consensus 628 ----------------~~~~~l~~~aidvLttvvr~t------------p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~ 679 (1005)
T KOG2274|consen 628 ----------------KAPAGLCAIAIDVLTTVLRNT------------PSPLPNLLICYAFPAVAKITLHSDDHETLQN 679 (1005)
T ss_pred ----------------ccCchhhHHHHHHHHHHHhcC------------CCCccHHHHHHHhHHhHhheeecCChHHHHh
Confidence 011233333344444444332 0111234555667777777644457777888
Q ss_pred HHHHHHHHHHHhCC-----CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHH
Q 002465 788 MLDSLNECIQISGP-----LLDEGQ-VRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVG 861 (919)
Q Consensus 788 ~~~~l~~~i~~~g~-----~~~~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~ 861 (919)
+=+||+..|...-+ ...+++ +.-++..+...|. .+-+|. ---.++
T Consensus 680 ~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd---------------p~~sds--------------~a~~VG 730 (1005)
T KOG2274|consen 680 ATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD---------------PETSDS--------------AAAFVG 730 (1005)
T ss_pred HHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC---------------Cccchh--------------HHHHHh
Confidence 88888888765211 111221 2234444443332 221211 122689
Q ss_pred HHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHH
Q 002465 862 EILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVA 910 (919)
Q Consensus 862 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (919)
.++.+++.+.|....+.++.++..+..++......+....-+.+|+-++
T Consensus 731 ~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 731 PLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887778888888888888765
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.42 E-value=1.4e-09 Score=122.06 Aligned_cols=495 Identities=14% Similarity=0.117 Sum_probs=317.4
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~ 147 (919)
.....+|..++-.+++.... .+++.......-++..+.......-|..+|.+++..+....+...-.++.+.
T Consensus 170 ~eet~vr~k~ve~l~~v~~~--------~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~ 241 (759)
T KOG0211|consen 170 VEETGVREKAVESLLKVAVG--------LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPI 241 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHH
Confidence 44566788888888887755 3333333333444555544334445667777777666544333345688899
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhh
Q 002465 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (919)
Q Consensus 148 l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (919)
..+..++..+.+|.++..-++.++...+... ....+.+.+.+...|. ...||.+|..++..+...+.... +
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~--~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~------d 312 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEI--VKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD------D 312 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHH--HHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch------h
Confidence 9999999999999999999999998877642 4567788888888887 78999999999999999875431 2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcc
Q 002465 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (919)
Q Consensus 228 ~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~ 307 (919)
....+.+.+.+..++.++.++......+.++....... ..-...++......+ +...++|..+..-...++.+...
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~--~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLK--DEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhc--chhhhhhHHhhcchHHHhhhcCc
Confidence 33355566666667788888877777777766543321 011122233333332 34455665554444444443110
Q ss_pred cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC
Q 002465 308 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA 387 (919)
Q Consensus 308 ~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 387 (919)
.+ ...-..+.++|.+.....+... ..+.+.+.....+...+|.+...+.+.|.+...++
T Consensus 389 ~~----~~~i~~~~ilp~~~~lv~d~~~-----------------~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~ 447 (759)
T KOG0211|consen 389 SC----YPNIPDSSILPEVQVLVLDNAL-----------------HVRSALASVITGLSPILPKERTISELLPLLIGNLK 447 (759)
T ss_pred cc----ccccchhhhhHHHHHHHhcccc-----------------hHHHHHhccccccCccCCcCcCccccChhhhhhcc
Confidence 00 0111234455666554443321 11222222222333334555666777788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 002465 388 APEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (919)
Q Consensus 388 ~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~ 466 (919)
+....+|.....-+..+-..... .+..+.+..+|.+...-.|.++++|.+..+.+..++...+..+ +-+.+-+.+.
T Consensus 448 de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~---~~~~~~~l~~ 524 (759)
T KOG0211|consen 448 DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF---FDEKLAELLR 524 (759)
T ss_pred hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHH
Confidence 88899998877655433322211 2334556788888888888899999999999999988777432 3334455555
Q ss_pred hhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhh
Q 002465 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 546 (919)
Q Consensus 467 ~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~ 546 (919)
..+.| ....+|.+|...+..++..+|.+ .+...+++.++....+++...|...+.++..++...|..+ +...++
T Consensus 525 ~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Ll 598 (759)
T KOG0211|consen 525 TWLPD-HVYSIREAAARNLPALVETFGSE---WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLL 598 (759)
T ss_pred hhhhh-hHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHh
Confidence 66777 67789999999999999999833 5677888888888887789999999999999999999765 557777
Q ss_pred HHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 002465 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (919)
Q Consensus 547 ~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (919)
|.+..... +....+|-.+...+..+...+.......++.++...+.+ +.+-.++..+..+++.+...
T Consensus 599 p~~~~l~~----D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 599 PVFLDLVK----DPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhcc----CCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHHH
Confidence 87777642 244567888888887776665544333343344333322 22222566666666655443
No 44
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.6e-07 Score=99.48 Aligned_cols=567 Identities=14% Similarity=0.178 Sum_probs=307.4
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcc-hHhHHHHHHHHHHHHHhcccCCC-Cc----
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES-AKSISKKLCDTVSELASNILPEN-GW---- 141 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~-~~~vr~~~~~~i~~i~~~~~~~~-~w---- 141 (919)
+++|.+|+-|--.|+..=... .++ -.+++.+.++. +..+|.+++-.+....+..|... .-
T Consensus 16 ~pdps~rk~aEr~L~~~e~q~------~y~--------l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQQ------NYP--------LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred CCCCccCchHHHHHHHhccCC------Cch--------HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 567889998888887653221 111 24556666554 78889998888888888544211 11
Q ss_pred ----ch-hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 002465 142 ----PE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (919)
Q Consensus 142 ----~~-ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (919)
.+ +-..++.++-+.......--..+++.+.++ +|-..|++++|-+...++.. +-.+-.+.+....++....
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~---DFP~kWptLl~dL~~~ls~~-D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR---DFPDKWPTLLPDLVARLSSG-DFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc---ccchhhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhc
Confidence 12 223344444444445555555666666553 34447999999999999876 6666666665555565554
Q ss_pred cCcch-----------hhHHhhhHHHHHHHHHHHHh--cCChHHHHHHHHHHH-------HHH-ccCcHHHHHhHHHHHH
Q 002465 217 TSSAD-----------RDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLI-------ELA-GTEPRFLRRQLVDVVG 275 (919)
Q Consensus 217 ~~~~~-----------~~~~~~~~p~il~~l~~~l~--~~~~~~~~~a~~~l~-------~l~-~~~~~~~~~~~~~li~ 275 (919)
..... ...|...+..++......++ +++.......+..+. .+. ..-|++|..|++..++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 32111 11122212222222222221 223322222233222 222 2338899999998888
Q ss_pred HHHHhhc--CC-----CcC----hhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 002465 276 SMLQIAE--AE-----SLE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (919)
Q Consensus 276 ~ll~~~~--~~-----~~~----~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~ 344 (919)
...+.+. ++ +.+ ..+|...++.+.-.+.. .+ +.+.+++..++...-..+.....++.++
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k---Ye---Eef~~fl~~fv~~~W~LL~~~s~~~kyD---- 307 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK---YE---EEFQPFLPDFVTATWNLLVSTSPDTKYD---- 307 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh---hH---HHHHhhHHHHHHHHHHHHHhcCCCccHH----
Confidence 7777663 11 111 23455555555544442 22 2345566666665555555443332111
Q ss_pred CCccccCCcccchHHHHHHHHHHH------cCCCcchHH-----------------------HHHHHHHhhCCCC-HHHH
Q 002465 345 EDEDAGESSNYSVGQECLDRLAIA------LGGNTIVPV-----------------------ASEQLPAYLAAPE-WQKH 394 (919)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~------~~~~~~~~~-----------------------l~~~l~~~l~~~~-~~~r 394 (919)
.....|.+.|..+++. +..+.++.. -+.++..-+...| -..|
T Consensus 308 --------~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRR 379 (960)
T KOG1992|consen 308 --------YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRR 379 (960)
T ss_pred --------HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhH
Confidence 0111223333333221 000111111 2223333343333 3457
Q ss_pred HHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh-CCCC--CHhHHHHHHHHHHHhhhhhch------------hHHhhhhh
Q 002465 395 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDP--HPRVRWAAINAIGQLSTDLGP------------DLQNQFHP 459 (919)
Q Consensus 395 ~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~--~~~vr~~a~~~L~~l~~~~~~------------~~~~~~~~ 459 (919)
.+|+..+..++......+...+...+..++.. ..+| +|+-+..+......++...+. .+..-+..
T Consensus 380 R~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~ 459 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFAN 459 (960)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHH
Confidence 88888888888877544445555555544442 3444 677777777776666643211 12133456
Q ss_pred hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH---
Q 002465 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--- 536 (919)
Q Consensus 460 ~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~--- 536 (919)
.++|.|.+.=.. +.|-++..+...+..|-...++ +++-.+++.+...++.+...+...|..++..+....+.
T Consensus 460 ~ilp~L~s~~vn-~~pilka~aIKy~~~FR~ql~~----~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 460 QILPDLLSPNVN-EFPILKADAIKYIYTFRNQLGK----EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HhhHHhccCccc-cccchhhcccceeeeecccCCh----HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 777777663222 4677777777776666555553 56778889999999999999999999999887655433
Q ss_pred ------HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcC-CCCCCCc-
Q 002465 537 ------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QMETDDP- 608 (919)
Q Consensus 537 ------~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~- 608 (919)
.+.||...++..|+..+..... ...+. .+.++-.+... ..+...|+++.++..+.++... .-+..+|
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~-~Eney---lmKaImRii~i-~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGK-AENEY---LMKAIMRIISI-LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcc-cccHH---HHHHHHHHHHh-CHHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 4557777777777766544333 22222 22333222222 2355667777777777663321 1122334
Q ss_pred hhHHHHHHHHHHHHHhcCC----cccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechh
Q 002465 609 TTSYMLQAWARLCKCLGQD----FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (919)
Q Consensus 609 ~~~~~~~~~~~l~~~~g~~----~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (919)
...|.+..++.+.+..+.. ...+-..++|.+...++.| -.|++
T Consensus 610 fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD--------------------I~Efi------------- 656 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED--------------------IQEFI------------- 656 (960)
T ss_pred hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHH-------------
Confidence 5567888877777666544 3455566666666555321 11121
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Q 002465 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTL 717 (919)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l 717 (919)
-.++.+++.++...+..+.+.+..+++.+
T Consensus 657 ----PYvfQlla~lve~~~~~ip~~~~~l~~~l 685 (960)
T KOG1992|consen 657 ----PYVFQLLAVLVEHSSGTIPDSYSPLFPPL 685 (960)
T ss_pred ----HHHHHHHHHHHHhcCCCCchhHHHHHHHh
Confidence 23666788888887775555555555544
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=6.7e-09 Score=115.60 Aligned_cols=394 Identities=17% Similarity=0.246 Sum_probs=259.6
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc-ccHHHHH
Q 002465 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLH 186 (919)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~ 186 (919)
++..|... +...-..++.++..+.....+....+.+.+++...+.++++.+|..++..++.+.+....... -.-..++
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 67777753 555557778888888887666555788999999999999999999999999988765432111 0225688
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHH
Q 002465 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (919)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 266 (919)
+.+..++.++ +..|...|++++..+...-.. ....|.. ..+..+...+...+..+|.+++++++.++...+..+
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~--~~~l~~~---~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPEG--LEQLFDS---NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCchh--HHHHhCc---chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998 999999999999999864210 1111122 235566666666688899999999999998887766
Q ss_pred HHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHH--HHHHHHHHhhcCCCCCcccccCC
Q 002465 267 RRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN--RLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 267 ~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
..... .+++.++..+.+ .|.-++..+++.+..+++. + ....|+. .+++.+...+.+..+++.+
T Consensus 196 ~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~----~g~~yL~~~gi~~~L~~~l~~~~~dp~~---- 261 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----P----HGLQYLEQQGIFDKLSNLLQDSEEDPRL---- 261 (503)
T ss_pred HHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----h----hHHHHHHhCCHHHHHHHHHhccccCCcc----
Confidence 54432 488888877754 4667899999999999993 1 1123443 3677777777655433200
Q ss_pred CCCccccCCccc-chHHHHHHHHHHHcCCC---cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH--HH----H
Q 002465 344 TEDEDAGESSNY-SVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VM----V 413 (919)
Q Consensus 344 ~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~--~~----~ 413 (919)
...+ ......++.++.. .+. ...|.++..+...+++.+...+.+|+.++|.++..... .+ .
T Consensus 262 --------~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~ 332 (503)
T PF10508_consen 262 --------SSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQG 332 (503)
T ss_pred --------cchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 1111 1122455555554 222 23466777777888899999999999999999865432 22 1
Q ss_pred HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch-------hHHhh----hhhhhHH-HHHhhccCCCChHHHHHH
Q 002465 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQ----FHPQVLP-ALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-------~~~~~----~~~~ll~-~l~~~l~d~~~~~v~~~a 481 (919)
+.++.++..+..........+|.+++.+++.+.....+ .+... ....-.. .+++.++. |-+.+|.++
T Consensus 333 ~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-PF~elr~a~ 411 (503)
T PF10508_consen 333 PAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-PFPELRCAA 411 (503)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchHHHHHH
Confidence 33456677777777777888999999999999654332 11111 1111222 66677777 789999999
Q ss_pred HHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
...|..++..-..-...--.+++++.++..-.+.++..++.=..++..++.
T Consensus 412 ~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 412 YRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999886531000001234455555554444555555555555555553
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.28 E-value=5.6e-11 Score=114.84 Aligned_cols=361 Identities=16% Similarity=0.191 Sum_probs=225.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhh-hhhhhccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchh
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQ-YIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~-~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (919)
+|.+.+.+.|.+-+....|..-|..+.. ...+-+.+.+ ..++|.|.++|...+..-.+..|..++.++...-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 4777777777776666666665654432 2222232222 2466778888844324556778999999887653211000
Q ss_pred hHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH--HHHHHHHHhhcCCCcChhHHHHHHHHHHH
Q 002465 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (919)
Q Consensus 223 ~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~li~~ll~~~~~~~~~~~vr~~al~~l~~ 300 (919)
-.-...+|.+++.|. +.+.+++.++.++|..++...+. .+.|+- ..++.++.++.....+-.+-..+...|+.
T Consensus 153 Vvd~~AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLLS----STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHHc----CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 011245676666554 67889999999999999875543 444443 34455555543333345666778888999
Q ss_pred HHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchH----
Q 002465 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP---- 376 (919)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~---- 376 (919)
+|+-+.-.| ....+.+.+|+|.+++-..+.+ ...-|..++..++.. +.+-..
T Consensus 228 lcRGknP~P-----~w~~isqalpiL~KLiys~D~e-----------------vlvDA~WAiSYlsDg--~~E~i~avld 283 (526)
T COG5064 228 LCRGKNPPP-----DWSNISQALPILAKLIYSRDPE-----------------VLVDACWAISYLSDG--PNEKIQAVLD 283 (526)
T ss_pred hhCCCCCCC-----chHHHHHHHHHHHHHHhhcCHH-----------------HHHHHHHHHHHhccC--cHHHHHHHHh
Confidence 998522111 1235778888888876432211 122234444444321 111111
Q ss_pred -HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhH-HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHH
Q 002465 377 -VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (919)
Q Consensus 377 -~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~ 454 (919)
-+.+.+.+++.+++.++..-++..+|.+..|....-.-.+ -..++.+...|.++...+|..|||+++++...-...++
T Consensus 284 ~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq 363 (526)
T COG5064 284 VGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ 363 (526)
T ss_pred cCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence 1334567888889988999999999999887654211111 12455666668888889999999999999876666664
Q ss_pred hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-ccccCcH--HHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 455 ~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l--~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
.-.-..++|.|++.|.. ....+++.|||++.+...++-. ..+..|+ ...+..|+.++.-.+..+-+-++.++..+.
T Consensus 364 avid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 364 AVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 44566899999999998 7789999999999999876531 1122332 234566777776666666666677776665
Q ss_pred HhhH
Q 002465 532 DSSQ 535 (919)
Q Consensus 532 ~~~~ 535 (919)
...+
T Consensus 443 k~Ge 446 (526)
T COG5064 443 KVGE 446 (526)
T ss_pred hhhh
Confidence 5433
No 47
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.1e-05 Score=92.16 Aligned_cols=687 Identities=13% Similarity=0.104 Sum_probs=328.6
Q ss_pred CCChHHHHHHHHHHHHh-hhcCchHH-----HHHHHHHHc--cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHH
Q 002465 33 STSNEQRSEAELLFNLC-KQQDPDSL-----TLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSL 104 (919)
Q Consensus 33 s~d~~~r~~Ae~~L~~~-~~~~p~~~-----~~~l~~il~--~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i 104 (919)
+++..+++.+-.-|..+ ..++..+| ...+..++. -+..|.+|..|...++..+...... ....-|.... +
T Consensus 106 stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~-~~~~HpA~~~-v 183 (1176)
T KOG1248|consen 106 STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFA-PDAEHPASLS-V 183 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCC-ccccchHHHH-H
Confidence 56777888887777653 22222222 344555443 3788999999999999998763100 1111111111 1
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch-----hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc
Q 002465 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-----LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (919)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~-----ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~ 179 (919)
-...++.+.+.-.+.......+.+..+ +...+ .||. +-..++......+..++..++.++..+....++.+.
T Consensus 184 ak~cl~~~e~~~~~a~~t~v~~~L~Ll-~~~~~--~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~ 260 (1176)
T KOG1248|consen 184 AKFCLALIESKLGSAENTTVLRSLMLL-RDVLS--TFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALA 260 (1176)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHH-HHhhc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcch
Confidence 122233332221111111222222221 11122 3653 334455555667778889999999998887665432
Q ss_pred c-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 002465 180 P-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (919)
Q Consensus 180 ~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l 258 (919)
. ....++..+.+.--+..+...-.+-++++......+.. ...+.....+|.++..++.+..+..+...+.+-.++..+
T Consensus 261 a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~i 339 (1176)
T KOG1248|consen 261 AELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEI 339 (1176)
T ss_pred HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2 22333443333322222333333334444433332211 122333445677788888877788888889999999998
Q ss_pred HccCcHHHHHhHHHHHHHHH-HhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 002465 259 AGTEPRFLRRQLVDVVGSML-QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (919)
Q Consensus 259 ~~~~~~~~~~~~~~li~~ll-~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~ 337 (919)
.+.+.. +.+.+....+ ..+..+ -..+-..++.+++.+.+.- .+...+++.+.+..+..+=...+..-
T Consensus 340 l~~sv~----~~~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek~------G~~s~~~l~~~L~~l~~lr~~~d~~~ 407 (1176)
T KOG1248|consen 340 LKESVT----VIDALCSKQLHSLLDYK--FHAVWRFILQILSALFEKC------GELSGPELTKTLEGLCDLRASPDFFH 407 (1176)
T ss_pred hcccCc----ccHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHHh------hhhcCHHHHHHHHHHHHhhcCCCCcc
Confidence 887765 2222222211 111111 1223334455555555520 01223344444443332111110000
Q ss_pred cccc---------------------CCCCCccccCCcccchHHHHHHHHHHHcCC---CcchHHHHHHHHHhh------C
Q 002465 338 LWHS---------------------AETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYL------A 387 (919)
Q Consensus 338 ~w~~---------------------~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l------~ 387 (919)
.... -+...++.+.. -...|-.+=.+... ..+...++|+...+. .
T Consensus 408 ~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~-----RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~ 482 (1176)
T KOG1248|consen 408 KLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFT-----RSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLK 482 (1176)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHcchhccccccccc-----hhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 00000000000 11112111111100 011112222221111 1
Q ss_pred CCCHHHHHHHHHHHH-HHHHhcHH------HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhc--------hh
Q 002465 388 APEWQKHHAALIALA-QIAEGCAK------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--------PD 452 (919)
Q Consensus 388 ~~~~~~r~aal~~l~-~i~~~~~~------~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~--------~~ 452 (919)
...-..+ .+..+. ++-.-.+. ....-+..+.+.+...+.- .+..|...|.+|-.+.+... .+
T Consensus 483 ~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e 559 (1176)
T KOG1248|consen 483 EAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAENKE 559 (1176)
T ss_pred hccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 1111111 111110 11111111 1223355666666665543 34889998888888887641 12
Q ss_pred HHhhhhhhhHHHHHhhccCCC-----ChHHHHHHHHHHH-HHHhcCCCc------------------cccCc-HHHHHH-
Q 002465 453 LQNQFHPQVLPALAGAMDDFQ-----NPRVQAHAASAVL-NFSENCTPE------------------ILTPY-LDGIVS- 506 (919)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~d~~-----~~~v~~~a~~al~-~l~~~~~~~------------------~l~~~-l~~i~~- 506 (919)
+...+....+|.+++.....+ ....|......+. ..+...+.+ .+.++ .-.++.
T Consensus 560 ~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl 639 (1176)
T KOG1248|consen 560 VLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDL 639 (1176)
T ss_pred HHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHH
Confidence 335678888998888766521 1122222222222 122111100 01111 011111
Q ss_pred -----------------HHHHHhhc-CChhHHHHHHHHHHHHHHhh-HHH-HHHhHhhhhHHHHHHHhhcCCcccchhhh
Q 002465 507 -----------------KLLVLLQN-GKQMVQEGALTALASVADSS-QEH-FQKYYDAVMPFLKAILVNATDKSNRMLRA 566 (919)
Q Consensus 507 -----------------~L~~~l~~-~~~~v~~~~l~al~~l~~~~-~~~-~~~~~~~i~~~l~~~l~~~~~~~~~~lr~ 566 (919)
.+.....+ .+..+|..+...|..+.... +.. ...+...+...+.+.++. .....+.
T Consensus 640 ~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs----~~~~~~~ 715 (1176)
T KOG1248|consen 640 LIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS----SSSPAQA 715 (1176)
T ss_pred HHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence 11122222 25788999999999888761 122 234566666666665543 2334567
Q ss_pred HHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHH---HhcCCcccchhhhhHHHHHhc
Q 002465 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK---CLGQDFLPYMSVVMPPLLQSA 643 (919)
Q Consensus 567 ~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~l~~i~~~ll~~~ 643 (919)
..+.|+..|....+.+.+.-....|-+.++.+ + +.+...|...+.++-.|+. .+-..-.| -+.++...+..+
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-K---e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~I 790 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-K---EVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSII 790 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-c---cccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHH
Confidence 78999999988777443333333334444433 2 2233355666666666652 11112122 122222222222
Q ss_pred ccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHHHccccC
Q 002465 644 QLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGF-FPWIDQVAPTLVPLLK 722 (919)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~-~p~~~~~~~~l~~~l~ 722 (919)
... .+ |+. ..-+...+-.+..+....++.+ .++++++++.+...+.
T Consensus 791 sag---l~----------------------gd~--------~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~ 837 (1176)
T KOG1248|consen 791 SAG---LV----------------------GDS--------TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLA 837 (1176)
T ss_pred Hhh---hc----------------------ccH--------HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 100 00 000 0001111344555555555544 3688888888888887
Q ss_pred CcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 002465 723 FYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (919)
Q Consensus 723 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~ 801 (919)
.. +++|+++|+..+..++... ....+....+.++|.++.+. .+....++..+-.-|..+++.+|.
T Consensus 838 s~-sreI~kaAI~fikvlv~~~------------pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 838 SN-SREIAKAAIGFIKVLVYKF------------PEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred cC-CHHHHHHHHHHHHHHHHcC------------CHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCH
Confidence 54 7899999999888887665 23346778888999999865 455677888888888999999987
No 48
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=1.8e-09 Score=109.69 Aligned_cols=252 Identities=18% Similarity=0.210 Sum_probs=148.3
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHH
Q 002465 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (919)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 267 (919)
.+...|.|+ +..||..|+.+|..+-. . .++..+..+++++++.+|..+...|..+......
T Consensus 27 ~L~~~L~d~-d~~vR~~A~~aL~~~~~-------~--------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 27 ELFRLLDDH-NSLKRISSIRVLQLRGG-------Q--------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCc-------c--------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 344455676 77888888777654321 0 2233334445577788888888888877532211
Q ss_pred HhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 002465 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (919)
Q Consensus 268 ~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~e 347 (919)
....++.+...+. .+.+..||..|+..|+.++.. .+
T Consensus 88 --~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~-------------------------------------- 123 (280)
T PRK09687 88 --QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP-------------------------------------- 123 (280)
T ss_pred --hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc--------------------------------------
Confidence 1222333333222 245677777777776665441 00
Q ss_pred cccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC
Q 002465 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (919)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l 427 (919)
...+.+.+.+...+.+++|.+|.++..+|+.+.. +..++.++..+
T Consensus 124 -------------------------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L 168 (280)
T PRK09687 124 -------------------------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLL 168 (280)
T ss_pred -------------------------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHh
Confidence 0012233334455667788888888888865421 34567777777
Q ss_pred CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHH
Q 002465 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (919)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~ 507 (919)
.|+++.||..|..+||.+.. ..+.+.+.|+..+.| .++.||..|..+|..+ +. +..++.
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~----~~-------~~av~~ 227 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQD-KNEEIRIEAIIGLALR----KD-------KRVLSV 227 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcC-CChHHHHHHHHHHHcc----CC-------hhHHHH
Confidence 88888888888888887621 123566777777787 7888888888888663 21 234566
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHH
Q 002465 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (919)
Q Consensus 508 L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~ 573 (919)
|++.+++++ ++..++.++|.+.. +..+|.|.+++.... ...++.++++.+.
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~---d~~v~~~a~~a~~ 278 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFD---DNEIITKAIDKLK 278 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCC---ChhHHHHHHHHHh
Confidence 666666654 45566666666543 245666777664322 3345666666553
No 49
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-09 Score=118.85 Aligned_cols=302 Identities=17% Similarity=0.226 Sum_probs=201.3
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCc--c
Q 002465 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS--A 220 (919)
Q Consensus 144 ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~ 220 (919)
+++.+..++++- ..+.|..|+.+|..++.+..++. .++.++|.++.++.|+ ..+||..|+.++..++....+. .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcc
Confidence 677777777763 45778899999999998876653 5899999999999998 9999999999999998775432 1
Q ss_pred hhhHHhhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHH
Q 002465 221 DRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (919)
Q Consensus 221 ~~~~~~~~~p~il~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~ 299 (919)
+...|.+ +++.-|..++.+ ....+|..-..+|..++...+.++.- ...+=. ..+.+ +.+.+
T Consensus 500 daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-~q~~~~--~g~~n--~~nse---------- 561 (1431)
T KOG1240|consen 500 DANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-TQELRQ--AGMLN--DPNSE---------- 561 (1431)
T ss_pred cchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-HHHHHh--ccccc--Ccccc----------
Confidence 2333443 667777777776 45557777778888887765554331 111100 00111 11111
Q ss_pred HHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHH
Q 002465 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (919)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (919)
...+ +............+-......+.+. ..-.+.+..+.+..|+..+|.+.....++
T Consensus 562 t~~~-----~~~~~~~~~L~~~V~~~v~sLlsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 562 TAPE-----QNYNTELQALHHTVEQMVSSLLSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred cccc-----cccchHHHHHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 0000 0000001111111112222222222 12244556667888999999777777889
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 002465 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (919)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (919)
+++..++++.+|+.|.+-+..+.-++-..+.. ..-+-++|.+.++|.|+.+.|-..|+.++.-+++.- .+...+.-
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~ 695 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVK 695 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHH
Confidence 99999999999999999888777655444321 112457889999999999999999999999988742 12245666
Q ss_pred hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 460 ~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
+++..+.-.|-. +|.-||..++..|....+.++
T Consensus 696 ~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 696 DILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhh
Confidence 777777777777 899999999999999887665
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.3e-06 Score=96.48 Aligned_cols=477 Identities=14% Similarity=0.168 Sum_probs=274.6
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC-hhHHHHHHHHHHHhhhhhhh
Q 002465 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGD 176 (919)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~-~~~r~~al~~l~~l~~~~~~ 176 (919)
++..+.+...|++++.. .+..||.++|..++.++.++.+ .--.+.+..+++++.-.+ ...-.+|+.+|+.++... =
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-l 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-L 412 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-C
Confidence 46778888899999985 7999999999999999987531 122345555556444333 566779999999888651 0
Q ss_pred hccccHHHHHHHHHHhhCCC-------CChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHH-HHHHHHhcCChHHH
Q 002465 177 TLTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATA 248 (919)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~-~l~~~l~~~~~~~~ 248 (919)
-+-..++.++|++.+++.-+ ....||.+|+..+-.+...... ....+++..+.. .+..++-+++-..|
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~----~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP----SDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh----hhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 01124678889888887543 2457999999999999887643 222333332322 33445557888899
Q ss_pred HHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHH
Q 002465 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (919)
Q Consensus 249 ~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~ 328 (919)
.+|..+|.+.+...+.+ ||--.++... ....-..|.++. ..++.. ...++.|...++..++.
T Consensus 489 RAAsAAlqE~VGR~~n~--p~Gi~Lis~~------dy~sV~~rsNcy---~~l~~~-------ia~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF--PHGISLISTI------DYFSVTNRSNCY---LDLCVS-------IAEFSGYREPVFNHLLT 550 (1133)
T ss_pred HHHHHHHHHHhccCCCC--CCchhhhhhc------chhhhhhhhhHH---HHHhHH-------HHhhhhHHHHHHHHHHh
Confidence 99999999999875542 2222332211 111222344433 333331 12345677777777765
Q ss_pred hhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002465 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (919)
Q Consensus 329 ~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 408 (919)
.=.. -|. ...+..++.+|..++..-+ +.+....++-+.....+.+...|++...+.|.+..++
T Consensus 551 ~Kv~-----HWd-----------~~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 551 KKVC-----HWD-----------VKIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred cccc-----ccc-----------HHHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 4111 132 2245567788888887665 4444344444444556788999999999999888765
Q ss_pred HHHH--HH--------hHHHHHHHHHhhCCCC--CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChH
Q 002465 409 AKVM--VK--------NLEQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (919)
Q Consensus 409 ~~~~--~~--------~l~~l~~~l~~~l~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~ 476 (919)
...- .. .+..+++.+...--+. ....|.+.+..+.+++..-....+.......-..+.+.+.+ ++ .
T Consensus 614 ~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~ 691 (1133)
T KOG1943|consen 614 RKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-Q 691 (1133)
T ss_pred hhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-H
Confidence 4311 11 1122333333222111 14567777777766665433322112222233334445555 55 8
Q ss_pred HHHHHHHHHHHHHhcCCCccccCcHH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHh
Q 002465 477 VQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (919)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~-~i~~~L~~~l~~~-~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (919)
+|..+.++++.++...-.. .++.. +++...+..+.+. +..+|.....+++.+-...=. .++.+.+...+....
T Consensus 692 i~~~av~av~~l~s~y~~~--d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~- 766 (1133)
T KOG1943|consen 692 IRDAAVSAVSDLVSTYVKA--DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL- 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhc--CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC-
Confidence 9999999999998754211 12222 4667777766665 566776666666655421110 012222222222221
Q ss_pred hcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCC-CCCC----chhHHHHHHHHHHHHHhc
Q 002465 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM-ETDD----PTTSYMLQAWARLCKCLG 625 (919)
Q Consensus 555 ~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~-~~~~----~~~~~~~~~~~~l~~~~g 625 (919)
..+-...-|...+.++..+...++...+..-.+++++.+++-+++.. ++.. -+|+.++.++..+-..+.
T Consensus 767 --p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 767 --PSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 11113345666778888887777755565666777777776444321 2211 267777777766654443
No 51
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-07 Score=101.88 Aligned_cols=384 Identities=13% Similarity=0.153 Sum_probs=231.7
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHH
Q 002465 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (919)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (919)
.|.+.|.+..+...+.+.-++|+.||+. ..-.+++|.+.....+.+.+++.....-|-+.++.-++.-. --+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSI 110 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSI 110 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeH
Confidence 3445566656677777888899988874 35688999999999999999988887777777776544311 124
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHH
Q 002465 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (919)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 266 (919)
..|.+.|.|+ ++-+|..|+++++.+-- ..+.|.++-.+.++..+..+.+|+.|.-++.++-+..+..-
T Consensus 111 ntfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 5677899998 99999999998876432 34677888999999999999999999999999987666543
Q ss_pred HHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhc-----ccchhhh---cchhhHHH-HHHHHHHhhcCCCCCc
Q 002465 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMR---KLPQFINR-LFAILMSMLLDIEDDP 337 (919)
Q Consensus 267 ~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~-----~~~~~~~---~~~~~~~~-li~~l~~~l~~~~~~~ 337 (919)
. .+.+++..++ . |.++.|...|.-.+..+|..+- ..-..++ ....+-+. ++..|..+-...-.++
T Consensus 179 ~-qL~e~I~~LL---a--D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 D-QLEEVIKKLL---A--DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred H-HHHHHHHHHh---c--CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 3 4445555443 3 3456666666666666665310 0000001 01111111 2222222211100000
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHH
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~ 414 (919)
|..+. +-+++ .+..-.. +.....-+| +.=...+++....++++.+..+-.|+..++-.++-..
T Consensus 253 -~~~~~-~~e~n----~~~~~~~--~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------ 318 (968)
T KOG1060|consen 253 -TVVDS-SLEDN----GRSCNLK--DKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------ 318 (968)
T ss_pred -ccccc-ccccC----ccccccc--ccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------
Confidence 11000 00000 0000000 000000011 1122335555566778888888888877777665432
Q ss_pred hHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHH-----------------------------hhhhhhhHHHH
Q 002465 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-----------------------------NQFHPQVLPAL 465 (919)
Q Consensus 415 ~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~-----------------------------~~~~~~ll~~l 465 (919)
....++..++..|. +++.+|+..+..+..++...+..+. ......+++.+
T Consensus 319 ~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 319 QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 33455666666554 4667888888888887764432220 12234555566
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH
Q 002465 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (919)
Q Consensus 466 ~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~ 537 (919)
...+.+ .+.++...+..+|+....... ..-+..+..|+.++.+.+..|...+...+-.+...-+..
T Consensus 398 q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 398 QTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 566666 444677777788887766554 356677888888888888888888888888888766643
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.20 E-value=2e-10 Score=94.37 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 002465 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~ 472 (919)
.|++++.++++++.+.+..+.++++.|++.++.++.|++++||+.||.+|.++++..+..+ -.+++++++.+.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 6999999999999999999999999999999999999999999999999999999999888 56999999999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 002465 473 QNPRVQAHAASAVLNFS 489 (919)
Q Consensus 473 ~~~~v~~~a~~al~~l~ 489 (919)
+++.||..| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998776 5566554
No 53
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.17 E-value=4.9e-09 Score=110.14 Aligned_cols=253 Identities=19% Similarity=0.212 Sum_probs=163.9
Q ss_pred hhHHhhhHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCC--
Q 002465 222 RDRFQDLLPLMMRTLTESLNNGN--------------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES-- 285 (919)
Q Consensus 222 ~~~~~~~~p~il~~l~~~l~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~-- 285 (919)
++.|.+.+..+++.+...+.-+. +.+...+++.+.-.++.+.+.+.++++.++..+++++....
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~ 152 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQ 152 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45566777777777666554221 12456678888888888889999999999988888774322
Q ss_pred -cChhHHHHHHHHHHHHHhhhcccchhhhc--chhhHHHHHH-HHHHhhcCCCCC-cccccCCCC-----CccccCCccc
Q 002465 286 -LEEGTRHLAIEFVITLAEARERAPGMMRK--LPQFINRLFA-ILMSMLLDIEDD-PLWHSAETE-----DEDAGESSNY 355 (919)
Q Consensus 286 -~~~~vr~~al~~l~~l~~~~~~~~~~~~~--~~~~~~~li~-~l~~~l~~~~~~-~~w~~~~~~-----~ed~~~~~~~ 355 (919)
..+.+-..++.+|..+++. +..... .++.+..++. ++++.|.-.++| +-|..+..| .|..+..+.+
T Consensus 153 ~~~D~lv~~al~FL~~v~~~----~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR 228 (370)
T PF08506_consen 153 PKYDILVSKALQFLSSVAES----PHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRR 228 (370)
T ss_dssp GGGHHHHHHHHHHHHHHHTS----HHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHH
T ss_pred ccccHHHHHHHHHHHHHHcc----hhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcH
Confidence 2344566789999988873 211111 2456777766 446666644332 223322211 1112345678
Q ss_pred chHHHHHHHHHHHcCCCcchHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHhcHH------------HHHHhHH
Q 002465 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNLE 417 (919)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~~~~------------~~~~~l~ 417 (919)
.+|...+..+++..+ +.+.+.+..++...++ +.+|+.+.+|+..+++++..... .+..++.
T Consensus 229 ~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 229 RAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 889999999999887 6677777777777665 56899999999999999875421 1223333
Q ss_pred H-HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHH
Q 002465 418 Q-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (919)
Q Consensus 418 ~-l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al 485 (919)
. ++|-+. .-.+.+|.+|..|++.+..+-..+++ ..+..++|.+++.|.+ ++..|+..|+.++
T Consensus 308 ~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 308 QHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp HHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 2 334443 22367899999999999998887764 5678899999999999 8888998888765
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=7e-09 Score=124.37 Aligned_cols=275 Identities=17% Similarity=0.176 Sum_probs=186.8
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhh
Q 002465 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (919)
Q Consensus 144 ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (919)
-++.|.+.+.++++.+|..|+..|+.+.. +..++.|...|.|+ +..||..|+.+|..+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc-----
Confidence 34667788889999999999999987532 34667777888887 999999999998877643311
Q ss_pred HHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHh
Q 002465 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 224 ~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
. ..+...++++++.+|..++..|..+....+ . .++..+. +.+..+|..|+..|..+-.
T Consensus 686 -----~----~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~----~l~~~L~--D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 -----A----PALRDHLGSPDPVVRAAALDVLRALRAGDA-------A----LFAAALG--DPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred -----h----HHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H----HHHHHhc--CCCHHHHHHHHHHHhcccC
Confidence 1 123344556889999999988887642211 1 1223333 5578899988877776422
Q ss_pred hhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHH
Q 002465 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (919)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (919)
+ . .+...+.+. +...+..+...|..+...- +...+.+.
T Consensus 744 -----~----------~----~l~~~l~D~-----------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~ 781 (897)
T PRK13800 744 -----V----------E----SVAGAATDE-----------------NREVRIAVAKGLATLGAGG------APAGDAVR 781 (897)
T ss_pred -----c----------H----HHHHHhcCC-----------------CHHHHHHHHHHHHHhcccc------chhHHHHH
Confidence 0 1 112222111 1234555555665543211 11245566
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 002465 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (919)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~ 463 (919)
.++++++|.+|.+++.+|+.+... +.+.+.+...+.|+++.||.+|+++|+.+.. ++.++
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~ 841 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVP 841 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHH
Confidence 788899999999999999877432 1233456677899999999999999987541 24558
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~ 529 (919)
.|...|.| +++.||..|..+|..+ . --+...+.|...+++.+..||..+..+|..
T Consensus 842 ~L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 842 ALVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 88888999 8999999999999885 1 122346677788889999999999888763
No 55
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.6e-05 Score=89.06 Aligned_cols=214 Identities=23% Similarity=0.357 Sum_probs=152.6
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHh
Q 002465 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ 113 (919)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~ 113 (919)
++++.|.+|.+.+.+++. .|+.+ .....++..++++.+|.+|..+|.+.++.+ |+.++.+.+..+|+.++....
T Consensus 24 ~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk~~v~~~~~ 97 (1041)
T KOG2020|consen 24 GSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEERVGLKNYVLTLII 97 (1041)
T ss_pred cchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCccccHHHHHHHHHHHh
Confidence 478899999999999999 67765 455666777889999999999999999998 999999999999999887655
Q ss_pred hc--------chHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh----hcc--
Q 002465 114 LE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----TLT-- 179 (919)
Q Consensus 114 ~e--------~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~----~~~-- 179 (919)
.. ....++.+++..+-.+++.++| ..||+++|.+.+....+ ...++.++.++..+.+.+-. .+.
T Consensus 98 ~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~s-~~~~el~m~Il~lLsEdvf~~ss~~~~q~ 175 (1041)
T KOG2020|consen 98 EASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKTS-ETVCELSMIILLLLSEEVFDFSSSELTQQ 175 (1041)
T ss_pred hcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhcC-cccchHHHHHHHHHHHHHhcccchHHHhh
Confidence 32 2456788899999999999999 79999999999988743 45667778788777776421 111
Q ss_pred ----------ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHH
Q 002465 180 ----------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (919)
Q Consensus 180 ----------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~ 249 (919)
..+..+...+....... +.++-.+++..+..+..+++-. ..+.... +..+..... ..+..|.
T Consensus 176 ~~~il~~~~~~~f~~i~~l~~~~~~~a-~~~~~~atl~tl~~fl~wip~~---~I~~tn~---l~~~l~~~l-n~~~~r~ 247 (1041)
T KOG2020|consen 176 KIIILKNLLENEFQQIFTLCSYIKEKA-NSELLSATLETLLRFLEWIPLG---YIFETNI---LELLLNKFL-NAPELRN 247 (1041)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhcccHH---HHHHhhh---HHHHHHhcc-chHHHHH
Confidence 11223333333334443 3447778888888888887521 1122211 222221111 3678899
Q ss_pred HHHHHHHHHHccCc
Q 002465 250 EALELLIELAGTEP 263 (919)
Q Consensus 250 ~a~~~l~~l~~~~~ 263 (919)
.+++||.+++....
T Consensus 248 ~al~CL~ei~s~~~ 261 (1041)
T KOG2020|consen 248 NALSCLTELLSRKR 261 (1041)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987653
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.15 E-value=3.3e-07 Score=102.20 Aligned_cols=450 Identities=16% Similarity=0.185 Sum_probs=259.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p--~~~-~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
.+...++.+.+. +.|.++-..++......| +.+ .+.++..+.++ +.+.-..+.-.|++++... -+..
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-------~~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-------SPDS 73 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-------CHHH
Confidence 456666766654 444444444443222122 111 23366667654 4444467777888888763 2233
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC---CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~---~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (919)
....++..+..+|.+ +++.||..++..++.++....... .-+++++.+..++.+++..+...|..+|..++..-.
T Consensus 74 l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~- 151 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE- 151 (503)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-
Confidence 467777888899987 799999999999988876431111 336899999999999999999999999999987532
Q ss_pred hcccc-HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 002465 177 TLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALEL 254 (919)
Q Consensus 177 ~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-p~il~~l~~~l~~~~~~~~~~a~~~ 254 (919)
.+... -+.+.+.+.+.+..+ +..+|..++.++..+...-+ ..+.... ..+++.+...+.++|.-++..++++
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~-----~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSP-----EAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred hHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCH-----HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 11100 112266777777775 77888888888888775422 1111111 0245555555667788899999999
Q ss_pred HHHHHccCcHHHHHhHH--HHHHHHHHhhcCCCcCh---hHHH-HHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHH
Q 002465 255 LIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEE---GTRH-LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (919)
Q Consensus 255 l~~l~~~~~~~~~~~~~--~li~~ll~~~~~~~~~~---~vr~-~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~ 328 (919)
+.+++... .. ..++. .+++.+...+.+...++ .+.. ..+.+...++.. .|.. .....+.++..++.
T Consensus 226 l~~La~~~-~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~---v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 226 LSELAETP-HG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQE---VLELYPAFLERLFS 297 (503)
T ss_pred HHHHHcCh-hH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHH---HHHHHHHHHHHHHH
Confidence 99999833 22 22322 46666666665444344 1111 123555566552 2211 11122333333443
Q ss_pred hhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcch--------HHHHHHHHHhhCCCCHHHHHHHHHH
Q 002465 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV--------PVASEQLPAYLAAPEWQKHHAALIA 400 (919)
Q Consensus 329 ~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~r~aal~~ 400 (919)
++... +......|.++++.++....++.++ ..++..+.....+.....|..++.+
T Consensus 298 ~~~s~-----------------d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 298 MLESQ-----------------DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred HhCCC-----------------ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 32211 1224556777777776543222222 3344444555566777899999999
Q ss_pred HHHHHHhcHH----HHHHhHHHH--------HH-HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 002465 401 LAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (919)
Q Consensus 401 l~~i~~~~~~----~~~~~l~~l--------~~-~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~ 467 (919)
++.+.....+ .+....... .. .+...++.|-|.+|.++...|..++.+.-....-...+.++..+++
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999654332 111111111 11 5666778888999999999999988753211101235567777776
Q ss_pred hccCCCChHHHHHHHHHHHHHHhcCC-CccccCcHHHHHHHHHHHhhcCCh
Q 002465 468 AMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVSKLLVLLQNGKQ 517 (919)
Q Consensus 468 ~l~d~~~~~v~~~a~~al~~l~~~~~-~~~l~~~l~~i~~~L~~~l~~~~~ 517 (919)
.-.+ +++..++.=...+..+.+... ...+ ---+.++..|...++.+..
T Consensus 441 r~~E-~~K~~ke~K~~ii~~l~~~~~~~~~~-~~~~~~~~kL~~yv~eGpy 489 (503)
T PF10508_consen 441 RSTE-TTKEGKEAKYDIIKALAKSSTNASSV-FDDPEYLGKLQEYVREGPY 489 (503)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHhcccchhhc-CCCHHHHHHHHHHHHcCCc
Confidence 6665 566666555555555554332 1111 1123334466666655543
No 57
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.13 E-value=2.3e-07 Score=101.30 Aligned_cols=382 Identities=15% Similarity=0.156 Sum_probs=236.6
Q ss_pred HHHHHhhcCCCh---hHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcc--
Q 002465 146 PFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (919)
Q Consensus 146 ~~l~~~~~s~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 220 (919)
|.++..+.+.+. ...+..+.++..++..-. -+......++..+....+...+.+.-...+.++..+++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 455555554433 456677888887776421 12223345555555555443355666778888888877643322
Q ss_pred -hhhHHhh--hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHccCcHHH-HHhHHHHHHHHHHh-----hc-CCCcC
Q 002465 221 -DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPRFL-RRQLVDVVGSMLQI-----AE-AESLE 287 (919)
Q Consensus 221 -~~~~~~~--~~p~il~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~-~~~~~~li~~ll~~-----~~-~~~~~ 287 (919)
....+.. ++|.+++.......... +.+...+...+..++...+..- ...+..++..++.. +. .....
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2233333 77788777765543322 3344444444444444433221 22233344433300 00 00000
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHH
Q 002465 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (919)
Q Consensus 288 ~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (919)
.......+..+..+... .+... .. +....++..++.+.....+ ...+..+.+++..+.+
T Consensus 161 ~~~~~~~~~l~~~il~~---l~~~~-~~-~~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCS---LRKDV-SL-PDLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccccHHHHHHHHHHc---CCccc-Cc-cCHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHc
Confidence 01112222333333331 11000 01 1334455555555443321 1245567788888888
Q ss_pred HcCCCcchHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhh
Q 002465 368 ALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (919)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (919)
.++....+..++..+.... .......|..++..+..++.+.--...+....++..++..+.| +.+...+..+++-+.
T Consensus 220 K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 220 KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 8765555555555554444 4556677888888888888775432234556677777777877 677888888888877
Q ss_pred hhhch------------hHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhc
Q 002465 447 TDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (919)
Q Consensus 447 ~~~~~------------~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~ 514 (919)
...+. -+..+++..++|.+++...+ .+...|.....||..++++++...+.++++.+++.|++.+..
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 66322 12246788999999999988 566688999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHH
Q 002465 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (919)
Q Consensus 515 ~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (919)
++..++..++.++..+....++.+.+|++.++|.|.++
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999989999999999998763
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.9e-06 Score=90.88 Aligned_cols=432 Identities=17% Similarity=0.235 Sum_probs=253.6
Q ss_pred HHHHHHHHhhc---chHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcccc
Q 002465 105 KSMLLQSIQLE---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (919)
Q Consensus 105 k~~ll~~l~~e---~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~ 181 (919)
.-.+.+.++++ ++..+.-.+--+++.++. + .--+++.|.+.+.+++.++.+|..|..|...+....|+.
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~s---~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l---- 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNICS---P-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL---- 176 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccCC---H-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----
Confidence 33444555543 233333333334444433 2 456899999999999999999999999999998887764
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 002465 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (919)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (919)
...+++.+.+.|.+. +.-|..+++..+..++..- ......|..++|.++..|.+.....-+... .+..
T Consensus 177 ~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~--~~~l~~fr~l~~~lV~iLk~l~~~~yspey--------dv~g- 244 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKIS--PDALSYFRDLVPSLVKILKQLTNSGYSPEY--------DVHG- 244 (866)
T ss_pred HHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--------CccC-
Confidence 456677777788876 7788888998888888753 234567788888888888876654211100 0001
Q ss_pred CcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 002465 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (919)
Q Consensus 262 ~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~ 341 (919)
.-.|+++--+-.++.++... +.+....-..+|..++...+ ...+.-..++-
T Consensus 245 ---i~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntd-------sskN~GnAILY----------------- 295 (866)
T KOG1062|consen 245 ---ISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTD-------SSKNAGNAILY----------------- 295 (866)
T ss_pred ---CCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhccc-------ccccchhHHHH-----------------
Confidence 11233332222233444322 33334444445555555211 01111122222
Q ss_pred CCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHH
Q 002465 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (919)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~ 421 (919)
+|...+....+...+.....+.+.+++.+.+-+.|+.|+..|..+...-+.....|-..|
T Consensus 296 ------------------E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tI-- 355 (866)
T KOG1062|consen 296 ------------------ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTI-- 355 (866)
T ss_pred ------------------HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHH--
Confidence 222222222222334444566667788889999999999999999887766555665554
Q ss_pred HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcH
Q 002465 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (919)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l 501 (919)
+.+|+|+++.+|..|+..+-.+... .....++..++..|.. .++..+...+.-+..+++.+.++ -..|+
T Consensus 356 --leCL~DpD~SIkrralELs~~lvn~-------~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP~-k~W~i 424 (866)
T KOG1062|consen 356 --LECLKDPDVSIKRRALELSYALVNE-------SNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAPD-KRWHI 424 (866)
T ss_pred --HHHhcCCcHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCc-chhHH
Confidence 4578999999999999988777653 4566777777888777 67889999999999999988764 23555
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh-HH----HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 002465 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSS-QE----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (919)
Q Consensus 502 ~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~-~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~ 576 (919)
+.+ ++++......|+..+...+-.++... ++ .+...+..+...-...+ +...+..-++=|+|..+
T Consensus 425 dtm----l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~i------s~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 425 DTM----LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDI------SQEPLLQVASWCIGEYG 494 (866)
T ss_pred HHH----HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhh------hhhhHHHHHHHHhhhhh
Confidence 544 44555555566666666666555544 21 22222222211111111 11223333556777666
Q ss_pred hhh--C--h-hhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 002465 577 MAV--G--K-DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (919)
Q Consensus 577 ~~~--~--~-~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 627 (919)
.-+ | . +-...--.+++..+..++... ..+...+.|++.++..+...++..
T Consensus 495 dlll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 495 DLLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred HHhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 321 1 1 111122345666666655432 233457888888887776665554
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.2e-07 Score=100.46 Aligned_cols=449 Identities=14% Similarity=0.176 Sum_probs=282.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
-|.++..+.-+.+.++++-..-+|-++.+.+|+-.+ .-+..++ ..+|+.+|..|.-.|..+= -..+.|
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaP- 142 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAP- 142 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHH-
Confidence 456667777788888888888888888887776321 1112222 3678888888876664431 111222
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~ 179 (919)
|--..++....++++.||+.+|++|-.+.+.+. .+.+.|+..+..++.+.++.+.-.|..++..+|..--+-+-
T Consensus 143 ----I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 143 ----IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred ----HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 222223333456899999999999999887543 46668999999999999999999999999998865434444
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh-hcCcc-----------------------hhhHHhhhHHHHHHH
Q 002465 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSSA-----------------------DRDRFQDLLPLMMRT 235 (919)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~-----------------------~~~~~~~~~p~il~~ 235 (919)
++...++.++.+.=.. -+...++.|..++.. ++.+. .+-....-+..+++.
T Consensus 217 knyrklC~ll~dvdeW-----gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEW-----GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred HHHHHHHhhccchhhh-----hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 4556666555432111 234455666665543 22110 000011223467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcc
Q 002465 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKL 315 (919)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~ 315 (919)
...++++.++.+..+++.++..++... ....|+..+++++.. ...++...+..+..++.. .|.+ +
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~---~~~l---F 356 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIK---RPTL---F 356 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhc---chhh---h
Confidence 778888899999999999988886532 234555666666532 456677777888887772 3322 2
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccch---HHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHH
Q 002465 316 PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV---GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 392 (919)
Q Consensus 316 ~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~---a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (919)
.+|+...+ ....| +..+ -.+.|..++. +.-.+.++.-++.++.+.+..
T Consensus 357 ~P~lKsFf-------v~ssD------------------p~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 357 EPHLKSFF-------VRSSD------------------PTQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRS 407 (968)
T ss_pred hhhhhceE-------eecCC------------------HHHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchh
Confidence 23333321 11110 1112 2234444443 445667788888899988877
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 002465 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~ 472 (919)
.-.+++.++|..+.... ..-+..+.-++..++..+..|...+...|-.+...-+. -+..++..+.+.+..-
T Consensus 408 faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~-----~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA-----EHLEILFQLARLLDTI 478 (968)
T ss_pred HHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHhhhh
Confidence 77777788887766543 23345566666667666778888888888887765433 2334555666666542
Q ss_pred CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHH
Q 002465 473 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (919)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~ 552 (919)
.-+.-|....|.++..++..+ ...+.++..+.+.+.+....+|-+++...+.+-....++ ...+....+++
T Consensus 479 ~vp~ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv~~L 549 (968)
T KOG1060|consen 479 LVPAARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYVFEL 549 (968)
T ss_pred hhhhhhceeeeeehhhhhhcc-----hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHHHHH
Confidence 335566777788888777644 357888999999999999999999888877776554444 34444455554
Q ss_pred H
Q 002465 553 L 553 (919)
Q Consensus 553 l 553 (919)
.
T Consensus 550 ~ 550 (968)
T KOG1060|consen 550 A 550 (968)
T ss_pred h
Confidence 3
No 60
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=8.9e-09 Score=123.48 Aligned_cols=272 Identities=19% Similarity=0.216 Sum_probs=186.5
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHH
Q 002465 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (919)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (919)
.|++.|. ++++.||..++..++.+. -+..++.|.+.+.++++.+|..|+..|+.+.+..+. .
T Consensus 625 ~L~~~L~-D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---------~ 686 (897)
T PRK13800 625 ELAPYLA-DPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---------A 686 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------h
Confidence 4556665 479999999999988653 156789999999999999999999999877543221 1
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHH
Q 002465 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (919)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~ 266 (919)
+.+...|.++ ++.||..|+.+|..+-.. .. ..+...+.++++.+|..++..|..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~~-----~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~--~--- 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRAG-----DA-----------ALFAAALGDPDHRVRIEAVRALVSVDD--V--- 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhccC-----CH-----------HHHHHHhcCCCHHHHHHHHHHHhcccC--c---
Confidence 3455667776 999999999988875311 10 123345678999999999999987622 1
Q ss_pred HHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 002465 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (919)
Q Consensus 267 ~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ 346 (919)
+.++..+ .+.+..||..+...|..+... .+ ..++.+...+.+.
T Consensus 745 --------~~l~~~l--~D~~~~VR~~aa~aL~~~~~~---~~-----------~~~~~L~~ll~D~------------- 787 (897)
T PRK13800 745 --------ESVAGAA--TDENREVRIAVAKGLATLGAG---GA-----------PAGDAVRALTGDP------------- 787 (897)
T ss_pred --------HHHHHHh--cCCCHHHHHHHHHHHHHhccc---cc-----------hhHHHHHHHhcCC-------------
Confidence 1122333 356799999999988887651 11 1133444443321
Q ss_pred ccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh
Q 002465 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (919)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~ 426 (919)
+...+..+...| +..-. . +.+.+.+...+.+++|.+|.+|+.+|+.+.. +..++.+...
T Consensus 788 ----d~~VR~aA~~aL---g~~g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~ 846 (897)
T PRK13800 788 ----DPLVRAAALAAL---AELGC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEA 846 (897)
T ss_pred ----CHHHHHHHHHHH---HhcCC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHH
Confidence 112344444444 43322 1 1223446677899999999999999987532 2345777888
Q ss_pred CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHH
Q 002465 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (919)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~ 487 (919)
|+|+++.||..|.++|+.+. .-+...+.|...++| +++.||..|..+|..
T Consensus 847 L~D~~~~VR~~A~~aL~~~~----------~~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRWP----------GDPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred hcCCCHHHHHHHHHHHhccC----------CCHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 99999999999999999961 112456677788888 899999999999863
No 61
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.4e-07 Score=99.42 Aligned_cols=497 Identities=13% Similarity=0.141 Sum_probs=269.7
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhccc-CCCCcchhHH
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGWPELLP 146 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~-~~~~w~~ll~ 146 (919)
+.+..+|..||..+++...+ ++.+...++...++..+.--.+....+.+|-+++.+|..-+ .-...++++|
T Consensus 352 d~dt~VrWSaAKg~grvt~r--------lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvp 423 (1133)
T KOG1943|consen 352 DTDTVVRWSAAKGLGRVTSR--------LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVP 423 (1133)
T ss_pred CCcchhhHHHHHHHHHHHcc--------CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 67889999999999998765 45666666666667644322246778899999999998521 1135568888
Q ss_pred HHHHhhcCC--------ChhHHHHHHHHHHHhhhhh-hhhccccHHHHHHH-HHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 002465 147 FMFQCVSSD--------SVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAV-FLNCLTNSNNPDVKIAALNAVINFIQCL 216 (919)
Q Consensus 147 ~l~~~~~s~--------~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~-l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (919)
.+...+.-. ...+|.+|..++-.+.... +..+.|++..+.+. +..++-|+ +..+|.+|..++-..+...
T Consensus 424 lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAAsAAlqE~VGR~ 502 (1133)
T KOG1943|consen 424 LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAASAALQENVGRQ 502 (1133)
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHHHHHHHHHhccC
Confidence 888777432 3478999999999888764 45577777777764 56778887 9999999999999888775
Q ss_pred cCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHH
Q 002465 217 TSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIE 296 (919)
Q Consensus 217 ~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~ 296 (919)
.+. |.=++.+.. .+.-.-..|..|...+...+..++.+..+.++.++.. +..+.+..+|..+-.
T Consensus 503 ~n~----------p~Gi~Lis~-~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~-----Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 503 GNF----------PHGISLIST-IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK-----KVCHWDVKIRELAAY 566 (1133)
T ss_pred CCC----------CCchhhhhh-cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc-----ccccccHHHHHHHHH
Confidence 421 111111110 0000122345566666666655665555555555431 123678999999999
Q ss_pred HHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchH
Q 002465 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP 376 (919)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 376 (919)
.|..+... .|+. .....+|.++......+-.. -....-++.+.+..+-..- .+.+
T Consensus 567 aL~~Ls~~---~pk~------~a~~~L~~lld~~ls~~~~~-------------r~g~~la~~ev~~~~~~l~---~~~~ 621 (1133)
T KOG1943|consen 567 ALHKLSLT---EPKY------LADYVLPPLLDSTLSKDASM-------------RHGVFLAAGEVIGALRKLE---PVIK 621 (1133)
T ss_pred HHHHHHHh---hHHh------hcccchhhhhhhhcCCChHH-------------hhhhHHHHHHHHHHhhhhh---hhhh
Confidence 99998873 3321 22234444444332221000 0001112222222111110 0111
Q ss_pred H------------HHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcHHHHHHhHHH-HHHHHHhhCCCCCHhHHHHHHHHH
Q 002465 377 V------------ASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAI 442 (919)
Q Consensus 377 ~------------l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~l~~-l~~~l~~~l~d~~~~vr~~a~~~L 442 (919)
. +.+++....+- ..--.|.+.+..+..+...-.......+.. .-..+...+.+++ .+|.++.+++
T Consensus 622 ~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av 700 (1133)
T KOG1943|consen 622 GLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAV 700 (1133)
T ss_pred hhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHH
Confidence 0 11111111110 012233444444444433222211112111 2223333445667 8999999999
Q ss_pred HHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc-CcHHHHHHHHHHHhhcC-ChhHH
Q 002465 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNG-KQMVQ 520 (919)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~i~~~L~~~l~~~-~~~v~ 520 (919)
+.++......- ......++...+..+.+..+.++|.....++..+.. +.+. ++-+.+...++...... .+..|
T Consensus 701 ~~l~s~y~~~d-~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~----~~i~~~~q~~lc~~~l~~~p~d~~a~aR 775 (1133)
T KOG1943|consen 701 SDLVSTYVKAD-EGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPS----ELIHRHLQEKLCKLVLELLPSDAWAEAR 775 (1133)
T ss_pred HHHHHHHHhcC-chhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcH----HhhchHHHHHHHHHHhccCcccccHHHH
Confidence 99887543211 112224777777777773456677666655555432 2222 23333444444444333 56778
Q ss_pred HHHHHHHHHHHHhhH-HHHHHhHhhhhHHHHHHHhhc----CCcccchhhhHHHHHHHHHHhhhC-hhhhhhh-HHHHHH
Q 002465 521 EGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSMECISLVGMAVG-KDKFRDD-AKQVME 593 (919)
Q Consensus 521 ~~~l~al~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~----~~~~~~~lr~~ai~~l~~l~~~~~-~~~~~~~-~~~i~~ 593 (919)
...+.++..++...+ ..+..-+.+++..|.+.+.+. ..+--.-+|..|+.++..+...+. ++.+.++ +..++.
T Consensus 776 ~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~ 855 (1133)
T KOG1943|consen 776 QQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIR 855 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHH
Confidence 888888888887766 223334444445555544432 233334588899998887765443 3444433 233333
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 002465 594 VLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (919)
Q Consensus 594 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (919)
.+++ ...+.-+.+++.+..++..+...
T Consensus 856 ~~vq---Q~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 856 YFVQ---QAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred HHHH---HhHHHHHHHHHHHHHHHhceeec
Confidence 3332 12222233556665555555443
No 62
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.10 E-value=3.2e-08 Score=96.16 Aligned_cols=357 Identities=15% Similarity=0.184 Sum_probs=222.6
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC
Q 002465 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (919)
Q Consensus 59 ~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~ 138 (919)
+.|.+-+- +.+-+....|..-+|+.+++. .-+.+.+-....+...+++.+.+.......-.++-++..+++.....
T Consensus 74 p~lt~~l~-SdDie~q~qav~kFR~~LS~E---~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLF-SDDIEQQLQAVYKFRKLLSKE---TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhccc---cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 44444332 456666777778899999885 23445555555666677777754345556778889999998864432
Q ss_pred CC---cchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhh---hhccc--cHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 002465 139 NG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG---DTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (919)
Q Consensus 139 ~~---w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~---~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (919)
.. -..-+|.+++++.+++..+|+.+..+||.++...+ +.+.. .++.++.++. .+..+..+...+...|+
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~---ss~~~ismlRn~TWtLS 226 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL---SSAIHISMLRNATWTLS 226 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH---hccchHHHHHHhHHHHH
Confidence 21 24678999999999999999999999999986532 22211 2334444333 22223456667888899
Q ss_pred HHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCCcChh
Q 002465 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEG 289 (919)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~~~~~ 289 (919)
++...-..+.+... +...+.+|..++...++++...|++++..+.....+.+.-.++ .+...++.++.++ +..
T Consensus 227 NlcRGknP~P~w~~----isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~ 300 (526)
T COG5064 227 NLCRGKNPPPDWSN----ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAK 300 (526)
T ss_pred HhhCCCCCCCchHH----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--ccc
Confidence 98875322223333 3345566677777889999999999999887755444333222 1122222333221 122
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHc
Q 002465 290 TRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL 369 (919)
Q Consensus 290 vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~ 369 (919)
+..-|+..++.++. .+|+ .. +.+
T Consensus 301 iqtPalR~vGNIVT-----------------------------G~D~--------------QT-------qvi------- 323 (526)
T COG5064 301 IQTPALRSVGNIVT-----------------------------GSDD--------------QT-------QVI------- 323 (526)
T ss_pred ccCHHHHhhcCeee-----------------------------cCcc--------------ce-------ehh-------
Confidence 22222222111111 0000 00 000
Q ss_pred CCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
+.--+++.+..+++++.-+.|..+++.++.+..|..+.+...++ .++|.++..+...+-.+|..|||++++....
T Consensus 324 ----I~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 324 ----INCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ----eecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00013444555678888899999999999999998887766655 5889999999989999999999999998765
Q ss_pred h--chhHHhhh--hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhc
Q 002465 449 L--GPDLQNQF--HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 449 ~--~~~~~~~~--~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~ 491 (919)
. .|++ -.| ...++..|...|.- .+.++-+-+..++.+++..
T Consensus 400 g~~~PD~-iryLv~qG~IkpLc~~L~~-~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 400 GLNRPDI-IRYLVSQGFIKPLCDLLDV-VDNKIIEVALDAIENILKV 444 (526)
T ss_pred ccCCchH-HHHHHHccchhHHHHHHhc-cCccchhhhHHHHHHHHhh
Confidence 3 2233 233 33566777777765 4455666778888888754
No 63
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=2.9e-08 Score=100.92 Aligned_cols=254 Identities=14% Similarity=0.145 Sum_probs=170.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhH
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (919)
++.|...+.+.+..+|..+...|+.+-. +.+++.+...++++ ++.+|..|+.+|+.+-..- ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~------~~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAK------RC 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc------cc
Confidence 5666777788999999999999886542 34666667777887 9999999999999864210 00
Q ss_pred HhhhHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHh
Q 002465 225 FQDLLPLMMRTLTES-LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 225 ~~~~~p~il~~l~~~-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
.+..+..|... .+++++.+|..++..|+.+....... ...++..+...+. +.+..||..+...|..+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAF--DKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC
Confidence 11233333333 46788999999999999886433222 1223333333333 4478899988877754422
Q ss_pred hhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHH
Q 002465 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (919)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 383 (919)
+..++.|+..+.+. +...+..+..+|+.+. .-.|.+.+.+.
T Consensus 158 ----------------~~ai~~L~~~L~d~-----------------~~~VR~~A~~aLg~~~------~~~~~~~~~L~ 198 (280)
T PRK09687 158 ----------------EAAIPLLINLLKDP-----------------NGDVRNWAAFALNSNK------YDNPDIREAFV 198 (280)
T ss_pred ----------------HHHHHHHHHHhcCC-----------------CHHHHHHHHHHHhcCC------CCCHHHHHHHH
Confidence 23455666655432 1224555666665541 11345666677
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 002465 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (919)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~ 463 (919)
..+.+.+|.+|..|..+||.+.. +..+|.|++.+.+++ +|..++.+||.+.. +..+|
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p 255 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLP 255 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHH
Confidence 78899999999999999987532 367788888888866 67788888988753 26778
Q ss_pred HHHhhccCCCChHHHHHHHHHHHH
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLN 487 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~ 487 (919)
.|.+.++..++..|+..+.+++..
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 888888633788999998888753
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.00 E-value=2.9e-08 Score=99.63 Aligned_cols=188 Identities=21% Similarity=0.329 Sum_probs=136.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhc-----HHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh
Q 002465 381 QLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (919)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~i~~~~-----~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (919)
.+...-.+.+|..|..++..+..+..+. .+.+...+..++..+...+.|....|...|+.+++.++..++..+ .
T Consensus 11 ~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-~ 89 (228)
T PF12348_consen 11 ALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-E 89 (228)
T ss_dssp THHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-H
T ss_pred HHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-H
Confidence 3334456889999999999999998877 234445666777888899999999999999999999999999998 7
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHH-HHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVADSS 534 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i-~~~L~~~l~~~~~~v~~~~l~al~~l~~~~ 534 (919)
++.+.++|.+++.+.+ ++..++..|..+|..+++.++ +.+.+ ...+.....+.++.+|..++.++..+....
T Consensus 90 ~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 90 PYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999 889999999999999998775 23344 666777888999999999999999999888
Q ss_pred H---HHHHH--hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhC
Q 002465 535 Q---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (919)
Q Consensus 535 ~---~~~~~--~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~ 580 (919)
+ ..+.. +++.+.+.+...+.+ ....+|..|-+++..+...+|
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 7 34433 457788888887743 345689999999998877666
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9.4e-05 Score=80.00 Aligned_cols=286 Identities=15% Similarity=0.184 Sum_probs=169.4
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcH
Q 002465 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (919)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (919)
+...+..-++++...++ --|+.+|+.++. +..-+++-+.+ ..++++..+-+|+.|+..+-.+.-.||+
T Consensus 110 ~tn~~rkdl~S~n~ye~-giAL~GLS~fvT-------pdLARDLa~Dv----~tLL~sskpYvRKkAIl~lykvFLkYPe 177 (877)
T KOG1059|consen 110 TTNLLRKDLNSSNVYEV-GLALSGLSCIVT-------PDLARDLADDV----FTLLNSSKPYVRKKAILLLYKVFLKYPE 177 (877)
T ss_pred HHHHHHHHhccCccchh-hheecccccccC-------chhhHHHHHHH----HHHHhcCchHHHHHHHHHHHHHHHhhhH
Confidence 33344444444412222 235555555442 22334444444 4455678999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 002465 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (919)
Q Consensus 265 ~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~ 344 (919)
.+++.++.+.+-+ .+.|+.|...|..++..+++ +.|+ +| -++-|.+++.|.... .+|
T Consensus 178 Alr~~FprL~EkL------eDpDp~V~SAAV~VICELAr---KnPk------ny-L~LAP~ffkllttSs--NNW----- 234 (877)
T KOG1059|consen 178 ALRPCFPRLVEKL------EDPDPSVVSAAVSVICELAR---KNPQ------NY-LQLAPLFYKLLVTSS--NNW----- 234 (877)
T ss_pred hHhhhHHHHHHhc------cCCCchHHHHHHHHHHHHHh---hCCc------cc-ccccHHHHHHHhccC--CCe-----
Confidence 9999998888744 46789999999999999988 3442 22 335667777776542 223
Q ss_pred CCccccCCcccchHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-----HHhcHHHHHHhHHH
Q 002465 345 EDEDAGESSNYSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQI-----AEGCAKVMVKNLEQ 418 (919)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i-----~~~~~~~~~~~l~~ 418 (919)
. ....+..++...+-+ .+-..+++-+.+++++.... .--..|+..+ ..|.++. .....-
T Consensus 235 -----------m-LIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g~~d~-~asiqL 299 (877)
T KOG1059|consen 235 -----------V-LIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSGMSDH-SASIQL 299 (877)
T ss_pred -----------e-hHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccCCCCc-HHHHHH
Confidence 2 234444444332211 11222333344444432210 0011122222 2222210 112233
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (919)
.+..+-..+.|.++.+++-++.+++.+....+..+ ..--..++++|.| .++.+|.+|...+..++..
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V-----qa~kdlIlrcL~D-kD~SIRlrALdLl~gmVsk------- 366 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV-----QAHKDLILRCLDD-KDESIRLRALDLLYGMVSK------- 366 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH-----HHhHHHHHHHhcc-CCchhHHHHHHHHHHHhhh-------
Confidence 34555556789999999999999999998665444 2334556889999 8999999999988887653
Q ss_pred CcHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHh
Q 002465 499 PYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADS 533 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~~~-~~v~~~~l~al~~l~~~ 533 (919)
.-+..|+..|+..+...+ ...|...+.-+-.++..
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 235667777777655444 35565555555444443
No 66
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1e-07 Score=93.64 Aligned_cols=381 Identities=15% Similarity=0.162 Sum_probs=230.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-ccccHHHHHHHHHHhhCCCC
Q 002465 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSN 197 (919)
Q Consensus 119 ~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~ 197 (919)
...+.++-+.+.+...... ..-.+....++-+++++++....+|...+|.++-..... +...+..+-+++.+.+.+
T Consensus 62 nlqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-- 138 (550)
T KOG4224|consen 62 NLQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-- 138 (550)
T ss_pred ccchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--
Confidence 3444444444444433221 123455666777788999999999999999887665432 333455566677777776
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhH-HHHHHH
Q 002465 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGS 276 (919)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~ 276 (919)
..++|-.++.|+.+++..-.+........ -+..+..+.++.+..++..+..+|..+...+... ...+ ..-+++
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~sG-----aL~pltrLakskdirvqrnatgaLlnmThs~EnR-r~LV~aG~lpv 212 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARSG-----ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR-RVLVHAGGLPV 212 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhcc-----chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh-hhhhccCCchh
Confidence 57889999999999997632221111111 2223333445667777888888887775433211 0001 122345
Q ss_pred HHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccc
Q 002465 277 MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (919)
Q Consensus 277 ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~ 356 (919)
+..++. ..+.++|..+...++.++-... .+
T Consensus 213 LVsll~--s~d~dvqyycttaisnIaVd~~-----~R------------------------------------------- 242 (550)
T KOG4224|consen 213 LVSLLK--SGDLDVQYYCTTAISNIAVDRR-----AR------------------------------------------- 242 (550)
T ss_pred hhhhhc--cCChhHHHHHHHHhhhhhhhHH-----HH-------------------------------------------
Confidence 555553 3467777777777776655200 00
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhH-HHHHHHHHhhCCCCCHhHH
Q 002465 357 VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVR 435 (919)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~~vr 435 (919)
+.++ +.-|.+++.+..++.+++.+++.-|-.+|+.++...... .+.. ..-+|.+++.++++....-
T Consensus 243 ------k~La------qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 243 ------KILA------QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred ------HHHH------hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHH
Confidence 0111 112345555566677777888888888888777654221 1111 1236777888888876666
Q ss_pred HHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCc-HHHHHHHHHHHhhc
Q 002465 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQN 514 (919)
Q Consensus 436 ~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~-l~~i~~~L~~~l~~ 514 (919)
-+...|+-+++.+-..+. .-.-..++..++..|.-..+..++-+|...|.++....... ...+ =..-++.+..++-+
T Consensus 310 lasVaCIrnisihplNe~-lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 310 LASVACIRNISIHPLNEV-LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-VSVIRESGAIPKLIELLLD 387 (550)
T ss_pred HHHHHHHhhcccccCccc-ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-hHHHhhcCchHHHHHHHhc
Confidence 677778888876654433 11223455667777766456779999999999998654422 1111 22347888888889
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhh
Q 002465 515 GKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (919)
Q Consensus 515 ~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~ 579 (919)
...++|+..-.|++.++..-. +..++ ..++|.|.+.. .++..++|+.+-+++..+...+
T Consensus 388 ~pvsvqseisac~a~Lal~d~--~k~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 388 GPVSVQSEISACIAQLALNDN--DKEALLDSGIIPILIPWT----GSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred CChhHHHHHHHHHHHHHhccc--cHHHHhhcCCcceeeccc----CccchhhcccHHHHHHhhhhhh
Confidence 999999999999998875433 22222 35667777654 3355678888888887775433
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=8.6e-05 Score=81.53 Aligned_cols=381 Identities=13% Similarity=0.120 Sum_probs=195.6
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 002465 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (919)
++|.--.+...+-+.++. +++.+|+.++.|...+.+.. | ..-..+++.....+.+.+..+-.+++.++..+|+..++
T Consensus 136 s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~-P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKV-P-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred CHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcC-c-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 455555555555566665 79999999999999888754 2 23445666677777788877778888888899887543
Q ss_pred ---hccccHHHHHHHHHHhhCCC----------CChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHH-------------
Q 002465 177 ---TLTPHLKHLHAVFLNCLTNS----------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP------------- 230 (919)
Q Consensus 177 ---~~~~~~~~l~~~l~~~l~~~----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p------------- 230 (919)
++....+.++.++.+..... .+|-++...++.|.-+-+.-++ ..+.+.+++.
T Consensus 213 ~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d--aSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 213 ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD--ASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHhcccccccch
Confidence 33344455555554444322 1445566666655544332111 1111111111
Q ss_pred ----------------------HHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcCh
Q 002465 231 ----------------------LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEE 288 (919)
Q Consensus 231 ----------------------~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~ 288 (919)
.-++++...+.+++...|.-++..|..++...+.....|-..|++.+ ++.|.
T Consensus 291 nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL------~DpD~ 364 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL------KDPDV 364 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh------cCCcH
Confidence 11222222333333333333334444444444455555554555433 46789
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHH
Q 002465 289 GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA 368 (919)
Q Consensus 289 ~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~ 368 (919)
.+|..|+|....++.. +-+..++..++.+|...+++ ...-...-+..+++.
T Consensus 365 SIkrralELs~~lvn~------------~Nv~~mv~eLl~fL~~~d~~-----------------~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 365 SIKRRALELSYALVNE------------SNVRVMVKELLEFLESSDED-----------------FKADIASKIAELAEK 415 (866)
T ss_pred HHHHHHHHHHHHHhcc------------ccHHHHHHHHHHHHHhccHH-----------------HHHHHHHHHHHHHHh
Confidence 9999999999999883 23455666666666544211 111233344555555
Q ss_pred cCCCcch--HHHHHHHHHhhCCCCHHHHHHHHHH-HHHHHHhcHHHHHHhHHHHHHHHHhh--CCCCCHhHHHHHHHHHH
Q 002465 369 LGGNTIV--PVASEQLPAYLAAPEWQKHHAALIA-LAQIAEGCAKVMVKNLEQVLSMVLNS--FRDPHPRVRWAAINAIG 443 (919)
Q Consensus 369 ~~~~~~~--~~l~~~l~~~l~~~~~~~r~aal~~-l~~i~~~~~~~~~~~l~~l~~~l~~~--l~d~~~~vr~~a~~~L~ 443 (919)
+.|+..+ ..++..+. ..--.+|.-.... +--|++++++.-......+...+... +.-+.+.....+.||||
T Consensus 416 faP~k~W~idtml~Vl~----~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IG 491 (866)
T KOG1062|consen 416 FAPDKRWHIDTMLKVLK----TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIG 491 (866)
T ss_pred cCCcchhHHHHHHHHHH----hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhh
Confidence 5444222 22222222 1111122222222 23344443432222222333322221 12234445778899999
Q ss_pred Hhhhhhchh-----HHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCCh
Q 002465 444 QLSTDLGPD-----LQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (919)
Q Consensus 444 ~l~~~~~~~-----~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~ 517 (919)
.+...+-.. ....--..++..+.+.+... .+..++..|..|+..+...+... .+.+-..+.....+-+.
T Consensus 492 EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-----~~ri~~lI~~~~~s~~~ 566 (866)
T KOG1062|consen 492 EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-----SERIKQLISSYKSSLDT 566 (866)
T ss_pred hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHhcccccH
Confidence 998544221 00111234444444443321 24678888888888887766532 33333333334445566
Q ss_pred hHHHHHHHH
Q 002465 518 MVQEGALTA 526 (919)
Q Consensus 518 ~v~~~~l~a 526 (919)
.+|.++++.
T Consensus 567 elQQRa~E~ 575 (866)
T KOG1062|consen 567 ELQQRAVEY 575 (866)
T ss_pred HHHHHHHHH
Confidence 777776654
No 68
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.3e-05 Score=87.90 Aligned_cols=474 Identities=16% Similarity=0.169 Sum_probs=276.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (919)
-+..++.++...|-+..+-...++..+.+..|+..+...-.++.+ ++++.+|.+|...+...=- ...
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----------~~i 118 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----------DKI 118 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee-----------hHH
Confidence 345556666667878899999999999888897654444444444 6789999999876644311 235
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh-hcc
Q 002465 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLT 179 (919)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~-~~~ 179 (919)
.+.+..-+.+++.. .++.+|+.++.+++.+.........-..+++.+.+++.++++.+...|+.++..|.+.-++ ...
T Consensus 119 ~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 56677778888886 6999999999999988765433334467899999999999999999999999999887653 222
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 002465 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (919)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~ 259 (919)
.....++..++..++.- +.=-+. ..+..+..+.++.. .+ .. .+++.+...+++.+..+...+...+..+.
T Consensus 198 ~l~~~~~~~lL~al~ec-~EW~qi---~IL~~l~~y~p~d~-~e-a~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNEC-TEWGQI---FILDCLAEYVPKDS-RE-AE----DICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred cccHHHHHHHHHHHHHh-hhhhHH---HHHHHHHhcCCCCc-hh-HH----HHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 22334444455555443 211223 33444455554321 11 11 35555555566667777777777777666
Q ss_pred ccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 002465 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (919)
Q Consensus 260 ~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w 339 (919)
......-...+..+-+.++.+++. .+++...++.-+.-+... .|. ++..-+...+ ..- .|+-+
T Consensus 268 ~~~~~~~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~~---~p~-------~~~~~~~~Ff---~ky-nDPiY 330 (734)
T KOG1061|consen 268 KYLKQVNELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQK---RPE-------ILKVEIKVFF---CKY-NDPIY 330 (734)
T ss_pred HHHHHHHHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHHh---ChH-------HHHhHhHeee---eec-CCchh
Confidence 554443233334444444444432 235566666655555552 332 1111111111 110 01100
Q ss_pred ccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHH
Q 002465 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (919)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l 419 (919)
....-.+++..++. +..++.++.-+.++...-+...-..++.++|.++....+. ...
T Consensus 331 --------------vK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~c 387 (734)
T KOG1061|consen 331 --------------VKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDC 387 (734)
T ss_pred --------------hHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhh
Confidence 01112334444442 3445556666677777777777778899999988765542 556
Q ss_pred HHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccC
Q 002465 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (919)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (919)
++.++.++.-.-..|...++..+-.+....+ +..+.+++.+...+..-++|+.|.+-.|.++...+.++
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP-----~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------ 456 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYP-----NKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------ 456 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCC-----CchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------
Confidence 6777776653333333344444444443333 22366777777776665678889888999988877665
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHH
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l 575 (919)
-.+.+++.+++-+.+....|+...+.+.-.+....+..-...+..+++ ... .+.+...+|.+++.-...+
T Consensus 457 ~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~---~~~---~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 457 NALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLP---LAT---ADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHh---hhh---ccccChhhhhhHHHHHHHh
Confidence 244556666666677777777766666555443333222222222222 111 1223345787777655544
No 69
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6.4e-07 Score=88.16 Aligned_cols=450 Identities=16% Similarity=0.175 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHhhhcCchHHH----HHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHH
Q 002465 37 EQRSEAELLFNLCKQQDPDSLT----LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (919)
Q Consensus 37 ~~r~~Ae~~L~~~~~~~p~~~~----~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l 112 (919)
..|......|+.+...+.-.|. .-.+.+|.-+.+...+..|++-+--...+. -...+.+..+ .++-.+
T Consensus 23 ~erEav~~ll~~lEd~~~i~fyS~~plraltvL~ySDnlnlqrsaalafAeitek~----vr~Vsres~e----pvl~ll 94 (550)
T KOG4224|consen 23 PEREAVADLLNRLEDRNAISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKG----VRRVSRESNE----PVLALL 94 (550)
T ss_pred hhHHHHHHHHHhhcccccccccCCCccchheeeeeccccccchHHHHHHHHHHHHH----HHHhhhhhhh----HHHHHH
Confidence 4466666677777654321111 112233443555555445544443333221 1223333322 233445
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCCCCcch---hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc-ccHHHHHHH
Q 002465 113 QLESAKSISKKLCDTVSELASNILPENGWPE---LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAV 188 (919)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~---ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~ 188 (919)
++ +++.+...++..++.++-.....+-.-. +=+.+.+++.+ ...++..+..|+..++..-..... .+...+.|
T Consensus 95 qs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p- 171 (550)
T KOG4224|consen 95 QS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEP- 171 (550)
T ss_pred hC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhh-
Confidence 54 7899999999999988875544333333 33455565544 445666788888888765221111 12223333
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC--cHHH
Q 002465 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--PRFL 266 (919)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~ 266 (919)
+...-++. +..+|..+..+|.++....+ .+..+.. ..-++.+..++.+.+++++..|+..+..++-.. -+.+
T Consensus 172 ltrLaksk-dirvqrnatgaLlnmThs~E---nRr~LV~--aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSK-DIRVQRNATGALLNMTHSRE---NRRVLVH--AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred hHhhcccc-hhhHHHHHHHHHHHhhhhhh---hhhhhhc--cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 33444444 78899999999988875543 1221110 022345555667889999999999988775322 2333
Q ss_pred HHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 002465 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (919)
Q Consensus 267 ~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ 346 (919)
.+.-+.+++.+++++. +.++.++.+|-..+..++...++.....+ ..-+|.++..+.+..
T Consensus 246 aqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~------------ 305 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPM------------ 305 (550)
T ss_pred HhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcc------------
Confidence 3333457777777775 34688888888888888774222111110 123555665553321
Q ss_pred ccccCCcccchHHHHHHHHHHHcCCCc-ch--HHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHH
Q 002465 347 EDAGESSNYSVGQECLDRLAIALGGNT-IV--PVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLS 421 (919)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~-~~--~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~ 421 (919)
....-....|+..++-+-+.+. +. ..+-|. ...+. .++-..+..|...|-.++............ .-+|
T Consensus 306 -----~plilasVaCIrnisihplNe~lI~dagfl~pL-VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~ 379 (550)
T KOG4224|consen 306 -----GPLILASVACIRNISIHPLNEVLIADAGFLRPL-VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP 379 (550)
T ss_pred -----hhHHHHHHHHHhhcccccCcccceecccchhHH-HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH
Confidence 0011112234444443322111 11 112233 33343 455667888888888777654432222222 3567
Q ss_pred HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-----c
Q 002465 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----E 495 (919)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-----~ 495 (919)
.+...+.|....||...--|+++++-.-... ..+ -..++|.++....+ .+.+||..|+.+|.+|++.... +
T Consensus 380 kl~eL~lD~pvsvqseisac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~YarviE 456 (550)
T KOG4224|consen 380 KLIELLLDGPVSVQSEISACIAQLALNDNDK--EALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHYARVIE 456 (550)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHHHhccccH--HHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHHHHHHH
Confidence 7788888888888888777777776432211 122 34788899988888 8899999999999999876531 0
Q ss_pred cc-cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 002465 496 IL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (919)
Q Consensus 496 ~l-~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~ 533 (919)
.. .|. ..+-..|...+.+....++.-+..++-.+...
T Consensus 457 awd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 457 AWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 01 122 44455555555555555555555555555543
No 70
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.78 E-value=1.2e-05 Score=88.06 Aligned_cols=370 Identities=16% Similarity=0.226 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHH-HHH
Q 002465 246 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR-LFA 324 (919)
Q Consensus 246 ~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-li~ 324 (919)
.....++.+|..++... ..+......++..+-....... +.+....++..+..+.+...... .......|.+. ++|
T Consensus 17 ~~~~~~L~~l~~ls~~~-~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~-~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALSTSP-QILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDK-QFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHCCh-hHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccc-ccchHHHHHHhHHHH
Confidence 45667788888887543 4445445555555544443222 45555666777777766421111 00122334444 888
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhh--------C-CCC---HH
Q 002465 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL--------A-APE---WQ 392 (919)
Q Consensus 325 ~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~-~~~---~~ 392 (919)
.++.......... .+ .+...-..+...+..+...++.+.--..+-....-++ . +.. +.
T Consensus 94 ~l~~~~~~~~~~~-------~~---~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 163 (415)
T PF12460_consen 94 RLFELALQASDQS-------SD---LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQ 163 (415)
T ss_pred HHHHHHHhhcccc-------cc---cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccc
Confidence 8877765442210 00 0112334455666667777664332222222222222 0 111 22
Q ss_pred HHHHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc
Q 002465 393 KHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 470 (919)
.+.... .+..+..+... ...+....++..++... +..++..|..++.+++-++..++. ...+..++..+...+.
T Consensus 164 ~~~~~~-l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~ 239 (415)
T PF12460_consen 164 QSRLVI-LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSIS 239 (415)
T ss_pred cccHHH-HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhc
Confidence 333222 23333333332 22235555666555543 445689999999999999887544 2355566666665552
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH--------H----
Q 002465 471 DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH--------F---- 538 (919)
Q Consensus 471 d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~--------~---- 538 (919)
.......+..+...+..+.++.-.. -.|....+++.|+.++.+ +.+...+..+++.+....++- .
T Consensus 240 ~~~~~~~~~~~~~~~~Wi~KaLv~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 240 SSEDSELRPQALEILIWITKALVMR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 1134555666666666655543211 236677888888888877 566777888888877653221 1
Q ss_pred -HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHH
Q 002465 539 -QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (919)
Q Consensus 539 -~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~ 617 (919)
.++|..++|.+.+.+....+. .|...+.+++.+...+++..+.++++++++++++-.+. .+..++..++.++
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~tL 389 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDE----IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLETL 389 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChh----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence 257888999998887654332 56667889999999999999999999999999985541 2233777888888
Q ss_pred HHHHHHhcCCcccchhhhhHHHHHh
Q 002465 618 ARLCKCLGQDFLPYMSVVMPPLLQS 642 (919)
Q Consensus 618 ~~l~~~~g~~~~~~l~~i~~~ll~~ 642 (919)
..+...-++-+.+|+..++|.+++.
T Consensus 390 ~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 390 KMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 8888877777899999999999863
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.77 E-value=0.00094 Score=78.67 Aligned_cols=422 Identities=13% Similarity=0.161 Sum_probs=219.8
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 002465 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (919)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~ 259 (919)
..++..+..++..+..+ ...+|..|++|++.+++.-+ . .-.-|.+...+..-+.+....+|..|++.++.++
T Consensus 812 ~sfD~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp-----~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGEN-AIALRTKALKCLSMIVEADP-----S--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFV 883 (1692)
T ss_pred HhhHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcCh-----H--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhh
Confidence 34567777788888876 89999999999999997521 1 1122455556666667788899999999999999
Q ss_pred ccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc--
Q 002465 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP-- 337 (919)
Q Consensus 260 ~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~-- 337 (919)
-..++...+|...+.+.+ .|....||..++..+..+|+. .| -+..+...+..++..+.|++
T Consensus 884 l~~~e~~~qyY~~i~erI------lDtgvsVRKRvIKIlrdic~e---~p--------df~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 884 LSIPELIFQYYDQIIERI------LDTGVSVRKRVIKILRDICEE---TP--------DFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred hccHHHHHHHHHHHHhhc------CCCchhHHHHHHHHHHHHHHh---CC--------ChhhHHHHHHHHHHHhccchhH
Confidence 999998888888877744 255678999999999999994 33 33445555666665554332
Q ss_pred -----------ccccCCCC-CccccCCcccchHHHHHHHHHH-HcCCCcchHHHHHHH-HHhhCCCCHHHHHHHHHHHHH
Q 002465 338 -----------LWHSAETE-DEDAGESSNYSVGQECLDRLAI-ALGGNTIVPVASEQL-PAYLAAPEWQKHHAALIALAQ 403 (919)
Q Consensus 338 -----------~w~~~~~~-~ed~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~l~~~l-~~~l~~~~~~~r~aal~~l~~ 403 (919)
-|...-.. ++. ..-.+.....+-..... ..+ ....+.++..+ ...... +-..+...
T Consensus 947 I~kLv~etf~klWF~p~~~~~d~--~~~~~kI~~~~~vv~~~~d~~-~~~~eqLl~~ilk~~~~~-------~~~~~~~~ 1016 (1692)
T KOG1020|consen 947 IKKLVRETFLKLWFTPVPEVNDQ--PAKARKISLEVDVVMSQVDLM-NDWLEQLLDHILKFYLLK-------TMKESVKP 1016 (1692)
T ss_pred HHHHHHHHHHHHhccCCCccccc--HHHHHhhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHhh-------hhhhhhhH
Confidence 25443222 110 00001110000000000 111 11222222111 111100 00001111
Q ss_pred HHHhcHHHHHH-----hHHHHHHHHHhhCCCCCHhHHHH-HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHH
Q 002465 404 IAEGCAKVMVK-----NLEQVLSMVLNSFRDPHPRVRWA-AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (919)
Q Consensus 404 i~~~~~~~~~~-----~l~~l~~~l~~~l~d~~~~vr~~-a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v 477 (919)
++..+...... ....+...-.....+.+..+|.. .+.+|..++...+.-+...|...+-|.+...........+
T Consensus 1017 v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~f 1096 (1692)
T KOG1020|consen 1017 VALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQF 1096 (1692)
T ss_pred HHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHH
Confidence 11111100000 00111111111123344555554 4567778887776655337888888888766333122334
Q ss_pred HHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHH---Hh
Q 002465 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI---LV 554 (919)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~---l~ 554 (919)
-...+..|...+.-.. ..=..++..+=+.|++.+-..+-.....++.|+++++......+. ....++..+... ++
T Consensus 1097 l~~vi~Ile~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~-~v~~cf~~~~k~le~~k 1174 (1692)
T KOG1020|consen 1097 LYYVIQILECVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK-VVKACFSCYLKLLEVIK 1174 (1692)
T ss_pred HHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHH
Confidence 4444455555444333 112246666667777777766766677788999999886433321 122222222222 22
Q ss_pred hcCCcc----cchhhhHHHHHHHHHHhhhC-------hhhhhhh----HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 002465 555 NATDKS----NRMLRAKSMECISLVGMAVG-------KDKFRDD----AKQVMEVLMSLQGSQMETDDPTTSYMLQAWAR 619 (919)
Q Consensus 555 ~~~~~~----~~~lr~~ai~~l~~l~~~~~-------~~~~~~~----~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 619 (919)
...+++ ....-.+.+.|+|.+++... ...+... .+.++..+.-... ..+..+|..++.+++.
T Consensus 1175 ~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k---~~~~~lR~~al~~Lg~ 1251 (1692)
T KOG1020|consen 1175 SSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSK---DKDGELRRKALINLGF 1251 (1692)
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHH
Confidence 222222 22334567899999988432 1222211 2233333322222 1235677788888888
Q ss_pred HHHHhcCCc-ccchhhhhHHHHH
Q 002465 620 LCKCLGQDF-LPYMSVVMPPLLQ 641 (919)
Q Consensus 620 l~~~~g~~~-~~~l~~i~~~ll~ 641 (919)
+|-.-+.-| .+.+..++..++.
T Consensus 1252 ~ci~hp~l~~~~~v~nly~~ila 1274 (1692)
T KOG1020|consen 1252 ICIQHPSLFTSREVLNLYDEILA 1274 (1692)
T ss_pred HHhhCchhhhhHHHHHHHHHHHh
Confidence 876544333 3444444444443
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=5.5e-05 Score=81.70 Aligned_cols=240 Identities=17% Similarity=0.298 Sum_probs=136.1
Q ss_pred chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcch
Q 002465 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (919)
Q Consensus 142 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (919)
.+|-+.++.++++..+-+|..|+.++..++...|+.+++ .+|.|..-|.|+ ++.|..+|+..+..++..-|
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDp-Dp~V~SAAV~VICELArKnP---- 213 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDP-DPSVVSAAVSVICELARKNP---- 213 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCC-CchHHHHHHHHHHHHHhhCC----
Confidence 456666677777777777777777777666666665443 445555566676 77777777777777766532
Q ss_pred hhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHH
Q 002465 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (919)
Q Consensus 222 ~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l 301 (919)
+.|-++-|.+...+.. +.+.-+....+..|..+....|..-.+.+..+.+.+ .. ..|+..++.+
T Consensus 214 -knyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li----~s--------T~AmSLlYEC 277 (877)
T KOG1059|consen 214 -QNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM----ES--------TVAMSLLYEC 277 (877)
T ss_pred -cccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH----Hh--------hHHHHHHHHH
Confidence 3344555555555543 233344455666666665555543333333222221 11 0122222222
Q ss_pred HhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHH
Q 002465 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (919)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (919)
+.. ++.. .+.... +.. ........+.
T Consensus 278 vNT-----------------VVa~--s~s~g~-------------------~d~----------------~asiqLCvqK 303 (877)
T KOG1059|consen 278 VNT-----------------VVAV--SMSSGM-------------------SDH----------------SASIQLCVQK 303 (877)
T ss_pred HHH-----------------heee--hhccCC-------------------CCc----------------HHHHHHHHHH
Confidence 221 0000 000000 000 1122334555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 002465 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (919)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~l 461 (919)
+..++.+.+.+.|+-++.+++.++...+..+..+. ..++++|.|.++.+|-.|+..+--+.. ...+..|
T Consensus 304 Lr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eI 372 (877)
T KOG1059|consen 304 LRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEI 372 (877)
T ss_pred HhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHH
Confidence 66778889999999999999999988776555444 455667899999999999988766553 3445555
Q ss_pred HHHHHhhccC
Q 002465 462 LPALAGAMDD 471 (919)
Q Consensus 462 l~~l~~~l~d 471 (919)
+..|+..+..
T Consensus 373 Vk~LM~~~~~ 382 (877)
T KOG1059|consen 373 VKTLMKHVEK 382 (877)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-06 Score=99.41 Aligned_cols=298 Identities=18% Similarity=0.213 Sum_probs=194.4
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc--
Q 002465 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-- 263 (919)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-- 263 (919)
++++..+++.-...+.|.+|+..+..+..++..+ ..+. .++..+..++.++..++|..|++.|.++...-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 3444444433224577899999999998887532 2333 455555566678899999999999998775321
Q ss_pred -----HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHH-HHHhhcCCCCCc
Q 002465 264 -----RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDDP 337 (919)
Q Consensus 264 -----~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~-l~~~l~~~~~~~ 337 (919)
..|.+| +++.+-.++.+ .....+|..-...|..++.. + .+ |++..... ...++.+.+.
T Consensus 497 ~~~daniF~eY---lfP~L~~l~~d-~~~~~vRiayAsnla~LA~t---A---~r----Fle~~q~~~~~g~~n~~ns-- 560 (1431)
T KOG1240|consen 497 PPSDANIFPEY---LFPHLNHLLND-SSAQIVRIAYASNLAQLAKT---A---YR----FLELTQELRQAGMLNDPNS-- 560 (1431)
T ss_pred CcccchhhHhh---hhhhhHhhhcc-CccceehhhHHhhHHHHHHH---H---HH----HHHHHHHHHhcccccCccc--
Confidence 112222 22322233322 23456777777778888773 1 11 22211110 0001111110
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~ 417 (919)
+.. ....+..-.. .+...+-+.+..++.++...+|.+-+..++-++.-+++. +.=+
T Consensus 561 ---------et~-~~~~~~~~~~------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND 616 (1431)
T KOG1240|consen 561 ---------ETA-PEQNYNTELQ------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSND 616 (1431)
T ss_pred ---------ccc-cccccchHHH------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--cccc
Confidence 000 0011111111 122334455567888888999999999888777665541 2224
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccc
Q 002465 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l 497 (919)
-|++.+...|+|.++++|.+-+..|.-++-..+.. ..-+-++|.+.+.|.| +.+.|-..|..+|..+++.-- .-
T Consensus 617 ~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~l--l~ 690 (1431)
T KOG1240|consen 617 VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGL--LR 690 (1431)
T ss_pred chHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcc--cc
Confidence 57889999999999999999999998888777753 2345678999999999 889999999999999998642 12
Q ss_pred cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 498 ~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
.+++-.+++....++-.++..+|..++..|..++...+.
T Consensus 691 K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 691 KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 478899999999999999999999999999999887764
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.73 E-value=8.4e-05 Score=78.05 Aligned_cols=445 Identities=16% Similarity=0.155 Sum_probs=211.6
Q ss_pred HhHHHHHHHHHHHHHhc-ccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCC
Q 002465 118 KSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~-~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (919)
..-|+.+...+..++.. .+|+.+-.+++=.+..+++++++-.|+....++..+.....+. --....+++-++.+
T Consensus 39 r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-----lm~tssiMkD~~~g 113 (898)
T COG5240 39 RSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-----LMGTSSIMKDLNGG 113 (898)
T ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-----hHHHHHHHHhhccC
Confidence 33455555555544443 2334455678888889999999999988877777666543322 12344555555555
Q ss_pred CChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHH
Q 002465 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGS 276 (919)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ 276 (919)
.+..+|-.|++.|..++..- .++.+=..+.++.-++.+..+..++-.--.+..........+..+.-+.
T Consensus 114 ~~~~~kp~AiRsL~~Vid~~-----------tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qea 182 (898)
T COG5240 114 VPDDVKPMAIRSLFSVIDGE-----------TVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEA 182 (898)
T ss_pred CccccccHHHHHHHHhcCcc-----------hhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 34478888888877666421 1112222222333333344443333222222222222222222222222
Q ss_pred HHHhhcCC----------CcChhHHHHHHHHHHHHHhhh-----------c----------------ccchhhhcchhhH
Q 002465 277 MLQIAEAE----------SLEEGTRHLAIEFVITLAEAR-----------E----------------RAPGMMRKLPQFI 319 (919)
Q Consensus 277 ll~~~~~~----------~~~~~vr~~al~~l~~l~~~~-----------~----------------~~~~~~~~~~~~~ 319 (919)
.+.+.+-+ .-..-...-|+.+|..+-++. . .....++..+++.
T Consensus 183 v~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~ 262 (898)
T COG5240 183 VLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQAL 262 (898)
T ss_pred HhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHH
Confidence 22111000 000011112222222221110 0 0001222344556
Q ss_pred HHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHc-CCCcchHHHHHHHHHhhCCCCHHHHHHHH
Q 002465 320 NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYLAAPEWQKHHAAL 398 (919)
Q Consensus 320 ~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~aal 398 (919)
.++.|.|-.|+.+.-+ ...--++..+.+++... + .++....+..+..++.++....|.+|+
T Consensus 263 ~q~rpfL~~wls~k~e-----------------mV~lE~Ar~v~~~~~~nv~-~~~~~~~vs~L~~fL~s~rv~~rFsA~ 324 (898)
T COG5240 263 LQLRPFLNSWLSDKFE-----------------MVFLEAARAVCALSEENVG-SQFVDQTVSSLRTFLKSTRVVLRFSAM 324 (898)
T ss_pred HHHHHHHHHHhcCcch-----------------hhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6666666666644211 12222445566665543 5 566667778888999999999999999
Q ss_pred HHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHH
Q 002465 399 IALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (919)
Q Consensus 399 ~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~ 478 (919)
..+..++-..+..+.-. =+.+-..+.|.|..+-.. ++..+.+.-. +...+.++..+...++| -+...+
T Consensus 325 Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~Isty---AITtLLKTGt----~e~idrLv~~I~sfvhD-~SD~FK 392 (898)
T COG5240 325 RILNQLAMKYPQKVSVC----NKEVESLISDENRTISTY---AITTLLKTGT----EETIDRLVNLIPSFVHD-MSDGFK 392 (898)
T ss_pred HHHHHHHhhCCceeeec----ChhHHHHhhcccccchHH---HHHHHHHcCc----hhhHHHHHHHHHHHHHh-hccCce
Confidence 99999987655321100 012223346666444433 3444433222 23344444444444444 222344
Q ss_pred HHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHH-------H-----hHhhhh
Q 002465 479 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ-------K-----YYDAVM 546 (919)
Q Consensus 479 ~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~-------~-----~~~~i~ 546 (919)
..+..++..++-.++.+. ..|+..+...|++ .+..+.+..++.+++.+....++.-. . -|++|.
T Consensus 393 iI~ida~rsLsl~Fp~k~-~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~ 468 (898)
T COG5240 393 IIAIDALRSLSLLFPSKK-LSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQIT 468 (898)
T ss_pred EEeHHHHHHHHhhCcHHH-HHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHH
Confidence 455666666666665332 2344433333322 33344444555554444433321100 0 123444
Q ss_pred HHHHHHHhhcCC----c-------------ccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHH-HHHHHhcCCCCCCCc
Q 002465 547 PFLKAILVNATD----K-------------SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME-VLMSLQGSQMETDDP 608 (919)
Q Consensus 547 ~~l~~~l~~~~~----~-------------~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~-~l~~l~~~~~~~~~~ 608 (919)
-.++.+|..... + +...+|+.|+.|++.++.... +.+. ++-+. .+.+..+ +.|++
T Consensus 469 vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~-d~~~---~~sv~~~lkRcln---D~Dde 541 (898)
T COG5240 469 VRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS-DVVS---PQSVENALKRCLN---DQDDE 541 (898)
T ss_pred HHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc-cccc---HHHHHHHHHHHhh---cccHH
Confidence 444455543211 0 223578899999998876554 3333 33332 3333333 35666
Q ss_pred hhHHHHHHHHH
Q 002465 609 TTSYMLQAWAR 619 (919)
Q Consensus 609 ~~~~~~~~~~~ 619 (919)
+|..+.-++..
T Consensus 542 VRdrAsf~l~~ 552 (898)
T COG5240 542 VRDRASFLLRN 552 (898)
T ss_pred HHHHHHHHHHh
Confidence 77655434433
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.70 E-value=5.6e-05 Score=79.30 Aligned_cols=257 Identities=18% Similarity=0.197 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (919)
.+.++.|.+..-+.+. -.-|...+.+++..+.... .-.+++...++.|...+.+.....|-.|++.|.+++.
T Consensus 261 ~~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~n-------v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEEN-------VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 5677888888888886 6778888889888877542 1134555778888888888888899999999999998
Q ss_pred cCcHHHH---HhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 002465 261 TEPRFLR---RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (919)
Q Consensus 261 ~~~~~~~---~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~ 337 (919)
.+|..+. +.+..++. +.+..+...|+ .++.+. + ...-+..++..+...+.+..|+
T Consensus 333 ~~P~kv~vcN~evEsLIs---------d~Nr~IstyAI---TtLLKT---G------t~e~idrLv~~I~sfvhD~SD~- 390 (898)
T COG5240 333 KYPQKVSVCNKEVESLIS---------DENRTISTYAI---TTLLKT---G------TEETIDRLVNLIPSFVHDMSDG- 390 (898)
T ss_pred hCCceeeecChhHHHHhh---------cccccchHHHH---HHHHHc---C------chhhHHHHHHHHHHHHHhhccC-
Confidence 8876442 22333332 33444444444 444442 1 2234555665555555554332
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHhcHHHHHH--
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA-YLAAPEWQKHHAALIALAQIAEGCAKVMVK-- 414 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~l~~i~~~~~~~~~~-- 414 (919)
...++.+++..++..++.+.. .++.++.. +++....+-+.++..+++.+.+..++.-..
T Consensus 391 ----------------FKiI~ida~rsLsl~Fp~k~~--s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL 452 (898)
T COG5240 391 ----------------FKIIAIDALRSLSLLFPSKKL--SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL 452 (898)
T ss_pred ----------------ceEEeHHHHHHHHhhCcHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH
Confidence 233466677777777763321 12223222 222333444444444444444433210000
Q ss_pred ----------hHHHH---------------------HHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 002465 415 ----------NLEQV---------------------LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (919)
Q Consensus 415 ----------~l~~l---------------------~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~ 463 (919)
..++| +..+...+-=+|..||.+|..+|+.++-.....+ ....+..
T Consensus 453 e~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~---~~~sv~~ 529 (898)
T COG5240 453 EVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV---SPQSVEN 529 (898)
T ss_pred HHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc---cHHHHHH
Confidence 01122 3333333333556799999999999987665422 2334555
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
.+..+++| .+..||.+|..++..+-
T Consensus 530 ~lkRclnD-~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 530 ALKRCLND-QDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHhhc-ccHHHHHHHHHHHHhhh
Confidence 56678888 88999999999887764
No 76
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.69 E-value=6e-07 Score=90.06 Aligned_cols=187 Identities=19% Similarity=0.216 Sum_probs=124.7
Q ss_pred CcccchHHHHHHHHHHHcCCCcchHHHHH-------HHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHH
Q 002465 352 SSNYSVGQECLDRLAIALGGNTIVPVASE-------QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (919)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~l~~-------~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~ 424 (919)
|..+..+...+..+.....+....+.+.+ .+...+.|..-.+-..|+.+++.++...+..+.++.+.++|.++
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33444455556655554411233333333 33345566677788899999999999998888899999999999
Q ss_pred hhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhh-HHHHHhhccCCCChHHHHHHHHHHHHHHhcCC--CccccC--
Q 002465 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP-- 499 (919)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~l-l~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~--~~~l~~-- 499 (919)
..+.+.+..+|.+|..+|..++..++ +.+.+ ++.+...+.+ .++.+|..++..+..++...+ ...+..
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999999999999999999998764 23344 6777778888 899999999999999999887 333433
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i 545 (919)
.++.+.+.+...+.++++.+|..+-.++..+....|+.-...+..+
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 3588999999999999999999999999999888886654444433
No 77
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.67 E-value=1.9e-06 Score=98.06 Aligned_cols=211 Identities=14% Similarity=0.220 Sum_probs=169.4
Q ss_pred CCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcH-HHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
++.++.+.+.+.+...+.|.+|+.|..|+..+..+.+... +....+...+...+...+.|.|..|...++.+|..++..
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3456777788888888899999999999999988887765 223344455555555667999999999999999999999
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 002465 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (919)
Q Consensus 449 ~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~ 528 (919)
++..+ ..|...++|.++..+.+ ..+.+|..+..++..++.. ..+..+.+.+...+.+.++.++......++
T Consensus 326 lr~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 326 LRPLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLD 396 (815)
T ss_pred cchhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 99988 79999999999999999 8889999999998888773 346667777888899999999999999999
Q ss_pred HHHHhhHH--HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHH
Q 002465 529 SVADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 593 (919)
Q Consensus 529 ~l~~~~~~--~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~ 593 (919)
......+. .+..-...+.|.+..... +....+|..|.++++.+.+.+|.+.+..++..+-+
T Consensus 397 r~~~~~~~~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHhhcCCcCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 98887773 234456777777777653 23456899999999999999997777766665553
No 78
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.3e-05 Score=83.02 Aligned_cols=176 Identities=17% Similarity=0.199 Sum_probs=138.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (919)
+.++..+.....+..|+.|......++.+.....-.-...+.+++..+.....|++..+|..|+.+|++.+...+... .
T Consensus 216 ~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~ 294 (533)
T KOG2032|consen 216 GKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-R 294 (533)
T ss_pred HHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-H
Confidence 334443334445667999998888877766532211124577888888888999999999999999999999988877 6
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
.+...++..++..|-|+.+..|.-.+..+|..+.+......+.+|+-++.-.+..++++.++.+|..++..+|.++...|
T Consensus 295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 88899999999988886788999999999999999887778899999999999999999999999999999999999887
Q ss_pred HHHHHhH-hhhhHHHHHH
Q 002465 536 EHFQKYY-DAVMPFLKAI 552 (919)
Q Consensus 536 ~~~~~~~-~~i~~~l~~~ 552 (919)
.....++ +++...+...
T Consensus 375 ~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 375 GGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred CCchhhhHHHHHhccccc
Confidence 6554433 3444333333
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.59 E-value=7.1e-05 Score=76.91 Aligned_cols=452 Identities=15% Similarity=0.111 Sum_probs=241.5
Q ss_pred HhHHHHHHHHHHHHHhcccC---CCCcchhHHHHH---------HhhcCCChhHHHHHHHHHHHhhhhh-----------
Q 002465 118 KSISKKLCDTVSELASNILP---ENGWPELLPFMF---------QCVSSDSVKLQESAFLIFAQLSQYI----------- 174 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~---~~~w~~ll~~l~---------~~~~s~~~~~r~~al~~l~~l~~~~----------- 174 (919)
..||..+-.++....+.... .+.|.-++|.-- -.++++++..|..|+.++..+.+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 34555555555544432111 157766665422 2356788889999999988886542
Q ss_pred hhhcccc-------HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHH
Q 002465 175 GDTLTPH-------LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (919)
Q Consensus 175 ~~~~~~~-------~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~ 247 (919)
+..|+|+ +..+..+++-.|.....+.+....++|+..++..-+- ...--.++..+++.+...+++.++.+
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY---DRLKLSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 1234442 3455566666666554678888899999999976431 12223566678888888999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHhHHHHHH-----------------------------------------------H----
Q 002465 248 AQEALELLIELAGTEPRFLRRQLVDVVG-----------------------------------------------S---- 276 (919)
Q Consensus 248 ~~~a~~~l~~l~~~~~~~~~~~~~~li~-----------------------------------------------~---- 276 (919)
+..++..+..++..... .|.+...+. .
T Consensus 167 ~vs~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 167 RVSSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred hhHHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 99999988877764411 000110000 0
Q ss_pred -------------HHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 002465 277 -------------MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 277 -------------ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
....+........+|..++.++..++.+ . .....+..++...+...+.+..
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~----~---~~~~~~~~~l~RvI~~~~~~~~--------- 308 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY----F---SMTQAYLMELGRVICKCMGEAD--------- 308 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHccCCCCC---------
Confidence 0000111113344677777777777764 1 1112233344444433333221
Q ss_pred CCCccccCCcccchHHHHHHHHHHHcC----CCcch-HHHHH-HHH---------HhhCCCCHHHHHHHHHHHHHHHHhc
Q 002465 344 TEDEDAGESSNYSVGQECLDRLAIALG----GNTIV-PVASE-QLP---------AYLAAPEWQKHHAALIALAQIAEGC 408 (919)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~-~~l~~-~l~---------~~l~~~~~~~r~aal~~l~~i~~~~ 408 (919)
.+.+..+..+++.+...++ |+..- +.... +-. ....+.......+++.++..+....
T Consensus 309 --------p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 309 --------PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA 380 (728)
T ss_pred --------hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh
Confidence 1234445556655554433 11110 00000 001 1112233445556666666654433
Q ss_pred HHHHHHhHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHH
Q 002465 409 AKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (919)
Q Consensus 409 ~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~ 487 (919)
...+...-....+..+.+..|. +..||.+|..+++-+.-+-+-.....+.......++..+.| ..-.+|..+++++++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGN 459 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhh
Confidence 2222222234455555555554 56688888888887776544333235667777888888888 677899999999999
Q ss_pred HHhcCCCcc--c----cCcHHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh-cC
Q 002465 488 FSENCTPEI--L----TPYLDGIVSKLLVLLQ---NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-AT 557 (919)
Q Consensus 488 l~~~~~~~~--l----~~~l~~i~~~L~~~l~---~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~ 557 (919)
+.+.+-... . ..+...++..+..... ..+..|+.+++.+++++......-..+-+..+++.-..-+.. ..
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~ 539 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL 539 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee
Confidence 877542111 1 1223333444444322 235789999999999988766644333344444332222111 11
Q ss_pred CcccchhhhHHHHHHHHHHhhhC-hhhhhhhHHHHHHHHHHHh
Q 002465 558 DKSNRMLRAKSMECISLVGMAVG-KDKFRDDAKQVMEVLMSLQ 599 (919)
Q Consensus 558 ~~~~~~lr~~ai~~l~~l~~~~~-~~~~~~~~~~i~~~l~~l~ 599 (919)
-+....+|-.+.-++|.+...-- +-.-.+++..+++.+..+.
T Consensus 540 ~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 12233456666666666533110 0112355666666666543
No 80
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.57 E-value=0.0001 Score=79.66 Aligned_cols=234 Identities=14% Similarity=0.156 Sum_probs=140.6
Q ss_pred hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh----c-CChhHHHHHHHHHHH
Q 002465 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ----N-GKQMVQEGALTALAS 529 (919)
Q Consensus 455 ~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~----~-~~~~v~~~~l~al~~ 529 (919)
.++...++..|+..+.. +...--+...+|+.+++...+ +.+.|+...+++.|...+. + .++..-....++++.
T Consensus 21 ~p~~~~ll~~Lf~~i~~-~~s~ENeylMk~iMRvl~~~~-e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEK-PGSAENEYLMKCIMRVLSVLQ-EDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp TCCHHHHHHHHHHHHHT-T-STC-HHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 56778888888888765 222212445666777766666 4466888888888877653 3 357888889999999
Q ss_pred HHHhhHH----HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH--HhcCCC
Q 002465 530 VADSSQE----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--LQGSQM 603 (919)
Q Consensus 530 l~~~~~~----~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~--l~~~~~ 603 (919)
++..... ....+-+.++|.+..+|+++ ..+.--.+++.++.+...-....+.+....+++.++. +|...
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d----V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~- 173 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQD----VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERR- 173 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGST-
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccC-
Confidence 9876442 23467788899999998753 2334455666777665443322333334445555443 34321
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcc--cchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeee
Q 002465 604 ETDDPTTSYMLQAWARLCKCLGQDFL--PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIK 681 (919)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~g~~~~--~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 681 (919)
. -...+...+..+.+.-+..+. +++..++...-+.++.+.. |
T Consensus 174 -g---niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~------------------D-------------- 217 (435)
T PF03378_consen 174 -G---NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN------------------D-------------- 217 (435)
T ss_dssp -T---THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC------------------H--------------
T ss_pred -C---CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc------------------c--------------
Confidence 1 124555556666666555553 6667777666666654311 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc-cccccHHHHHHHHccccCCcCChHHHHHHHHhHH
Q 002465 682 TSVLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 738 (919)
Q Consensus 682 ~~~~~~k~~a~~~l~~l~~~~~~-~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~ 738 (919)
..|.++|..++.+++. .+.||+++++..++..+..+..+..++.-+..+.
T Consensus 218 -------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 218 -------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp -------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 2377899999999986 6899999999999998886545555544443333
No 81
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.53 E-value=6.4e-07 Score=79.65 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (919)
+++.+.+++.+.+|..|..++.+++.++.+.++.....+. .+++.+.+.+.+++++++..++++|++++...+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3455566777888999999999999999886554444455 788999999999999999999999999998765433112
Q ss_pred hhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 457 ~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
....+++.+.+.+++ .+..++..++++|.++++
T Consensus 88 ~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 334689999999998 789999999999998863
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.53 E-value=3.9e-07 Score=75.03 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh
Q 002465 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 434 vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~ 513 (919)
.|..++.+|+..+..++..+ ..|++.++|.++.++.| ++++||..||.+|.++++..+.. +.+|+..+++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 47889999999999999887 89999999999999999 99999999999999999998854 56899999999999999
Q ss_pred cCChhHHHHH
Q 002465 514 NGKQMVQEGA 523 (919)
Q Consensus 514 ~~~~~v~~~~ 523 (919)
++++.||..+
T Consensus 79 D~d~~Vr~~a 88 (97)
T PF12755_consen 79 DPDENVRSAA 88 (97)
T ss_pred CCchhHHHHH
Confidence 9999999765
No 83
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0036 Score=69.07 Aligned_cols=344 Identities=15% Similarity=0.170 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC-----CCCCHhHHHHH-HHHHHHhhhhhchh--HHhhhhhhhHHH
Q 002465 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RDPHPRVRWAA-INAIGQLSTDLGPD--LQNQFHPQVLPA 464 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-----~d~~~~vr~~a-~~~L~~l~~~~~~~--~~~~~~~~ll~~ 464 (919)
.|-+|-..+..+.+..++.+.+.+-+++....... +|-+..++..| ..+.|.-+..+... +..=+...++|.
T Consensus 413 lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpE 492 (978)
T KOG1993|consen 413 LRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPE 492 (978)
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHH
Confidence 56666655555555555444444444443333333 23334444443 44455444444332 211123345555
Q ss_pred HHhhccCCCC-hHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHh---hHHHHH
Q 002465 465 LAGAMDDFQN-PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADS---SQEHFQ 539 (919)
Q Consensus 465 l~~~l~d~~~-~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~-~~~v~~~~l~al~~l~~~---~~~~~~ 539 (919)
+. .+.++ .-+|.+.++.++..++.-- -....+.+...+++++++. +..++-.+..++...++- .++.|.
T Consensus 493 l~---~~~~~~RiiRRRVa~ilg~Wvsvq~---~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl 566 (978)
T KOG1993|consen 493 LA---NDHGNSRIIRRRVAWILGQWVSVQQ---KLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL 566 (978)
T ss_pred hh---hcccchhHHHHHHHHHHhhhhheec---hHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence 54 12133 3468899999988876322 2234455667888888887 577888888888888765 357899
Q ss_pred HhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 002465 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWAR 619 (919)
Q Consensus 540 ~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 619 (919)
||++.+...++.++...+.-+ -|...+.+++.+...++ +.+.||+.++++++-.+|... +....++-.++.++.+
T Consensus 567 p~lenlf~~lfkll~~~~e~D---tk~~VL~~ls~lI~r~~-e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 567 PYLENLFVLLFKLLKAVEECD---TKTSVLNLLSTLIERVS-EHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRN 641 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHH
Confidence 999999999999886543222 35557888888888787 778899999999999888742 3334488899999999
Q ss_pred HHHHhcCCcccchhhhhHHHHHhcccC-CCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHH
Q 002465 620 LCKCLGQDFLPYMSVVMPPLLQSAQLK-PDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCY 698 (919)
Q Consensus 620 l~~~~g~~~~~~l~~i~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l 698 (919)
+...+|..-.++-|-++|.+-.+.... |+.....+ .++.+.+..
T Consensus 642 lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~E-----------------------------------DgmeLW~~~ 686 (978)
T KOG1993|consen 642 LVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLE-----------------------------------DGMELWLTT 686 (978)
T ss_pred HHHHhccCCccchHHHHHHHHHhcCCCCCceeehhh-----------------------------------hHHHHHHHH
Confidence 999999987777777777776655321 21111110 122233333
Q ss_pred HHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 002465 699 ADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK 778 (919)
Q Consensus 699 ~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 778 (919)
..+. ..+.|-+-.+++.+.+.++-+ .+..| ++-.+++++..- .++..++.....++..+.+.+.+
T Consensus 687 L~n~-~~l~p~ll~L~p~l~~~iE~s-te~L~-----t~l~Ii~sYilL--------d~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 687 LMNS-QKLTPELLLLFPHLLYIIEQS-TENLP-----TVLMIISSYILL--------DNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred Hhcc-cccCHHHHHHHHHHHHHHHhh-hhhHH-----HHHHHHHHHHhh--------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 335566666666666666543 23332 222333333211 13455666666666666666544
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 002465 779 EPDTEICASMLDSLNECIQI 798 (919)
Q Consensus 779 e~~~~~~~~~~~~l~~~i~~ 798 (919)
-++ +-..++++...-+++.
T Consensus 752 vr~-egl~avLkiveili~t 770 (978)
T KOG1993|consen 752 VRN-EGLQAVLKIVEILIKT 770 (978)
T ss_pred hhH-HHHHHHHHHHHHHHhh
Confidence 332 2334555555555543
No 84
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.50 E-value=5e-07 Score=72.46 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCccc--------CCCHHHHHHHHHHHHHHH
Q 002465 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (919)
Q Consensus 42 Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~--------~l~~~~~~~ik~~ll~~l 112 (919)
||+.|+++++.+|+ |...|++++.+ +.++.+|++|+++||+.|.++ |. .++++.++.||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 78999999994476 56899999955 668999999999999999998 88 999999999999999987
Q ss_pred h
Q 002465 113 Q 113 (919)
Q Consensus 113 ~ 113 (919)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 85
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.0011 Score=71.44 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=178.1
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC
Q 002465 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (919)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (919)
..+...+.....+. +..||.+|++.+..+-+.+. +-..+.+...+.+.+.+.++|.+|++.+.-+.+.+
T Consensus 197 ~~~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 34444455566665 89999999999988876431 11134556667778889999999999998888777
Q ss_pred cHHH------HHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHH-HHHhhc----
Q 002465 263 PRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLL---- 331 (919)
Q Consensus 263 ~~~~------~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~-l~~~l~---- 331 (919)
|... ....+..+..+...+. |.+..||..|.+.++.+-.. ...++.+.+.. ++..+.
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~v----------See~i~QTLdKKlms~lRRkr~ 333 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQV----------SEEIIQQTLDKKLMSRLRRKRT 333 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHh----------HHHHHHHHHHHHHhhhhhhhhh
Confidence 4211 1233444444444443 45678899888888876553 11233333221 111110
Q ss_pred CC------------CCCcccccCCCCCcc-ccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHH
Q 002465 332 DI------------EDDPLWHSAETEDED-AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAAL 398 (919)
Q Consensus 332 ~~------------~~~~~w~~~~~~~ed-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal 398 (919)
.. ....+|..+-..+++ +++.+....+ + .| .+.-.+.|.=..+|.||.
T Consensus 334 ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sG--A-------CG----------A~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 334 AHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSG--A-------CG----------ALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred cccchHHHHhcCCcccCccccccCchhhcccccccccccc--c-------cc----------eeeeechHHHHHHHHHHH
Confidence 00 011234322211111 1111111100 0 01 111233455567999999
Q ss_pred HHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHH
Q 002465 399 IALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (919)
Q Consensus 399 ~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~ 478 (919)
..++.++...+. +-..-+..+...++|+...||..|..+|..++.++ ..-.+.++.++..|.| .+..+|
T Consensus 395 ~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D-~s~dvR 463 (823)
T KOG2259|consen 395 ASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLED-RSVDVR 463 (823)
T ss_pred HHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHh-cCHHHH
Confidence 999999887653 33456677778899999999999999999999873 3445677788888888 888998
Q ss_pred HHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 479 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 479 ~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
.+.-..| ..+.-..+ .-+...+..|++.+... |.-|..++.|++.+.+..+.
T Consensus 464 e~l~elL----~~~~~~d~-~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 464 EALRELL----KNARVSDL-ECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHH----HhcCCCcH-HHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 7755444 33332221 44556666666666432 33456778888888776653
No 86
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.43 E-value=4.8e-07 Score=66.72 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHh
Q 002465 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (919)
Q Consensus 391 ~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l 445 (919)
|.+|.+|+.+||.+++..++...++.+.+++.+...++|+++.||..|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999975
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0024 Score=69.29 Aligned_cols=353 Identities=15% Similarity=0.186 Sum_probs=201.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhH
Q 002465 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (919)
Q Consensus 150 ~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 229 (919)
++++++....+..+...+..+.+.-.+ ....++..+.+-|.+. ++...--|++|++++-+.- ..+.|..-+
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~re----~~ea~~~DI 151 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSRE----MAEAFADDI 151 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccHh----HHHHhhhhh
Confidence 445555555566666666666554322 2444555555556554 6666667888877765431 334444434
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccc
Q 002465 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (919)
Q Consensus 230 p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~ 309 (919)
| +.|.. .+..+-+++.+.-||..+....|+.+.+ +...+.+++++.+ .+-.+-..+..++..++.. .|
T Consensus 152 ~---KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D--~~~gv~ta~~sLi~~lvk~---~p 219 (938)
T KOG1077|consen 152 P---KLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDD--QHMGVVTAATSLIEALVKK---NP 219 (938)
T ss_pred H---HHHhC--CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCc--cccceeeehHHHHHHHHHc---CC
Confidence 4 22321 2234567888888888888888776654 3444555556543 3355666777778888773 33
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCC----CCC-cccccCCCCCccccCCcccchHHHHHHHHHHHcCCC---cchHHHHHH
Q 002465 310 GMMRKLPQFINRLFAILMSMLLDI----EDD-PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQ 381 (919)
Q Consensus 310 ~~~~~~~~~~~~li~~l~~~l~~~----~~~-~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~ 381 (919)
. .....++..+..+... ..+ .++.-. ....+|- ..+.+. +-..+|+. .....+...
T Consensus 220 ~-------~yk~~~~~avs~L~riv~~~~t~~qdYTyy-------~vP~PWL-~vKl~r-lLq~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 220 E-------SYKTCLPLAVSRLSRIVVVVGTSLQDYTYY-------FVPAPWL-QVKLLR-LLQIYPTPEDPSTRARLNEV 283 (938)
T ss_pred H-------HHhhhHHHHHHHHHHHHhhcccchhhceee-------cCCChHH-HHHHHH-HHHhCCCCCCchHHHHHHHH
Confidence 2 2222333333322211 100 111000 0112221 122222 22233321 122223333
Q ss_pred HHHhhC-------CCCHHH---HHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch
Q 002465 382 LPAYLA-------APEWQK---HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (919)
Q Consensus 382 l~~~l~-------~~~~~~---r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~ 451 (919)
+...++ +.+.+. +.|.+...-.++..... -...+.+-+..+-..+.+..+.+|+-|+..+..++..-..
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s 362 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS 362 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch
Confidence 333332 333333 33444333333332211 1244556677778888999999999999999998875221
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 452 ~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
......-...++..|+...+..+|..|...|..+|+.-. ...|+..|++.+.+.++.+|+....=++.++
T Consensus 363 ---~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 363 ---IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred ---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 122222255667777743788999999999999987543 5677888999999999999999999999999
Q ss_pred HhhHHHHHHhHhhhhHHHH
Q 002465 532 DSSQEHFQKYYDAVMPFLK 550 (919)
Q Consensus 532 ~~~~~~~~~~~~~i~~~l~ 550 (919)
.....++..|.+.+++.+.
T Consensus 433 EKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 433 EKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHhcCCcchhHHHHHHHHH
Confidence 8888777777777766544
No 88
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.0064 Score=66.66 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC-----CC---CCHhHHHHHHHHHHHhhhhhc--hhHHhhhhhhhHHHH
Q 002465 396 AALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RD---PHPRVRWAAINAIGQLSTDLG--PDLQNQFHPQVLPAL 465 (919)
Q Consensus 396 aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-----~d---~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~ll~~l 465 (919)
||+.++-.+...-++ ..+..+++.+...+ .+ .+++-.+.|++.++.+..... .......-.-+++.+
T Consensus 389 aal~fl~~~~sKrke---~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv 465 (970)
T COG5656 389 AALFFLIISKSKRKE---ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHV 465 (970)
T ss_pred HHHHHHHHHhcccch---hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 344444433333333 34555666555544 12 357778889998888776221 112122334566677
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH--HHHHHhHh
Q 002465 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYD 543 (919)
Q Consensus 466 ~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~--~~~~~~~~ 543 (919)
+..+++ +.--.+.+||..++.+-+..+.. ..+..+.+...+++++.+..++-.|..|+..+..... +.+..+.+
T Consensus 466 ~P~f~s-~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp 541 (970)
T COG5656 466 IPAFRS-NYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVP 541 (970)
T ss_pred hHhhcC-cccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhh
Confidence 777787 66778999999999997666533 4567777888888888888889889899998886653 45667777
Q ss_pred hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 002465 544 AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (919)
Q Consensus 544 ~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (919)
..|+.|+.+- ++-+...+ -.++..+..... +...||+++++..+.
T Consensus 542 ~tmekLLsLS---n~feiD~L----S~vMe~fVe~fs-eELspfa~eLa~~Lv 586 (970)
T COG5656 542 ETMEKLLSLS---NTFEIDPL----SMVMESFVEYFS-EELSPFAPELAGSLV 586 (970)
T ss_pred HHHHHHHHhc---ccccchHH----HHHHHHHHHHhH-HhhchhHHHHHHHHH
Confidence 7777777653 22221111 123333333333 445666666665544
No 89
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.35 E-value=0.0045 Score=69.58 Aligned_cols=206 Identities=14% Similarity=0.230 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch------------hHHhhhh
Q 002465 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP------------DLQNQFH 458 (919)
Q Consensus 391 ~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~------------~~~~~~~ 458 (919)
...+..|+..+..+..+.--...+.-..+...++..|++++ +-..+..+++-+..+..+ -+...++
T Consensus 788 ~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF 865 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF 865 (1030)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH
Confidence 34567777777776665422111222345555556666532 333344444443333221 2235678
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHH
Q 002465 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (919)
Q Consensus 459 ~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~ 538 (919)
.+++|.+.+.+.. ....+|..-..+|...+.+.+...+.|.++.+++-|++.+.-++..+|..++.++..+....+.-.
T Consensus 866 ~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 8999999999985 566788888999999999999888999999999999999999999999999999999999988888
Q ss_pred HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhc
Q 002465 539 QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (919)
Q Consensus 539 ~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~ 600 (919)
..|+++++|.+..+= .+++.....+|..|++|++.+.+.++.....+|-++++..+...++
T Consensus 945 t~~~~Tlvp~lLsls-~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLS-SDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred hHHHhHHHHHHHhcC-CCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 899999999999863 3233334678999999999999988878888999999999887554
No 90
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0043 Score=69.45 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=112.7
Q ss_pred HhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh-ccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHH
Q 002465 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (919)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~-l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~ 510 (919)
...-++++.++-.++++++..- ...++.++...... +.. .++.....+...++.++..++... -|+..-++.|++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~-~~~i~rl~~~~asik~S~-~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~~ 556 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETE-STWIPRLFETSASIKLSA-PNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLFQ 556 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHhcccccccc-CChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHHH
Confidence 4556677788888888887644 34444444443332 222 467777888888888887765332 355666666666
Q ss_pred HhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHH
Q 002465 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (919)
Q Consensus 511 ~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~ 590 (919)
.+..+ +.-..+...+..++..++.++.||.+.++..+...+.+.+- ....|.+++.++|.+.....++....|...
T Consensus 557 ~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~--~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 557 GLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA--KDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc--CchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 66543 34455777799999999999999999999999999876332 234577789999999888878888889988
Q ss_pred HHHHHHH
Q 002465 591 VMEVLMS 597 (919)
Q Consensus 591 i~~~l~~ 597 (919)
+++.++.
T Consensus 633 lin~il~ 639 (982)
T KOG2022|consen 633 LINPILS 639 (982)
T ss_pred HHHHHHH
Confidence 8888776
No 91
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=0.00054 Score=75.76 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhCCCC-CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC
Q 002465 416 LEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 416 l~~l~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~ 494 (919)
++.++|.++..|+++ ++.+...||++|..+++.++.....-.....+|.++..|..-+...|.+.+..+|..+.+.-++
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 467899999999876 7899999999999999999987632234468999988777656678999999999999887665
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHH
Q 002465 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (919)
Q Consensus 495 ~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~ 574 (919)
.++..- . +...+..++--...+++.|+...+.++.....+=-.|+-..+|.|.++|....+ .....+.-|+..
T Consensus 289 AiL~AG--~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~----k~ies~~ic~~r 361 (1051)
T KOG0168|consen 289 AILQAG--A-LSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDK----KPIESVCICLTR 361 (1051)
T ss_pred HHHhcc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccc----hhHHHHHHHHHH
Confidence 444321 1 122233333334577888999999998887765446777889999999865322 233344557777
Q ss_pred HHhhh--Chhhhhhh-HHHHHHHHHHHh
Q 002465 575 VGMAV--GKDKFRDD-AKQVMEVLMSLQ 599 (919)
Q Consensus 575 l~~~~--~~~~~~~~-~~~i~~~l~~l~ 599 (919)
++... +++++... -..++.-+.+++
T Consensus 362 i~d~f~h~~~kLdql~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 362 IADGFQHGPDKLDQLCSHDLITNIQQLL 389 (1051)
T ss_pred HHHhcccChHHHHHHhchhHHHHHHHHH
Confidence 76543 33444332 223444444443
No 92
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.28 E-value=0.00021 Score=77.29 Aligned_cols=254 Identities=14% Similarity=0.174 Sum_probs=162.4
Q ss_pred CCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh-cCCcccchhhhHHHHH
Q 002465 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMEC 571 (919)
Q Consensus 493 ~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~lr~~ai~~ 571 (919)
.+..+.|+...++..|+..+..+...--+....|+-.+....++...|+...+++.|..++.. +.+++....-...+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 456788999999999999998765444566788888888888888889988888888887754 2344444555568999
Q ss_pred HHHHHhhhCh---hhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc-CCcccchhhhhHHHHHhcccCC
Q 002465 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (919)
Q Consensus 572 l~~l~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~l~~i~~~ll~~~~~~~ 647 (919)
++.+.+.+.+ +....+-+.+++.+..++...+ .+...|++..++.+....+ ..+.+..-.++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999886542 2233556666777776554322 2467888888888888766 556666666777666321
Q ss_pred CccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHccccCCcC
Q 002465 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (919)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~--p~~~~~~~~l~~~l~~~~ 725 (919)
-|+. ++.. -...++|..++...+..+. ++++.++..+-+++....
T Consensus 169 -------------------lWe~-----------~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWER-----------RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGGS-----------TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhcc-----------CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 1221 0111 1245688888888888775 788999999888888653
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 002465 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (919)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~ 801 (919)
+ -..++..|..++..+. .+.+.+++..++..+++.+++.+....+...+.-++-++...|+
T Consensus 216 ~---D~~gF~LL~~iv~~~p------------~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~ 276 (435)
T PF03378_consen 216 N---DHYGFDLLESIVENLP------------PEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP 276 (435)
T ss_dssp C---HHHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred c---chHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence 3 3567888888887763 23456677778888888887766655555555444444444443
No 93
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00036 Score=75.99 Aligned_cols=223 Identities=13% Similarity=0.238 Sum_probs=129.9
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
..+..+.+.|+.. ++.|+..|..++..+.. .+..+......+++.+.. ..+..+.--.+.-|.++.....
T Consensus 243 ~~i~~i~~lL~st-ssaV~fEaa~tlv~lS~------~p~alk~Aa~~~i~l~~k---esdnnvklIvldrl~~l~~~~~ 312 (948)
T KOG1058|consen 243 RYIRCIYNLLSST-SSAVIFEAAGTLVTLSN------DPTALKAAASTYIDLLVK---ESDNNVKLIVLDRLSELKALHE 312 (948)
T ss_pred HHHHHHHHHHhcC-CchhhhhhcceEEEccC------CHHHHHHHHHHHHHHHHh---ccCcchhhhhHHHHHHHhhhhH
Confidence 4555566666665 66666655544433322 122222222233333332 2233333344455555543333
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 002465 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 264 ~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
..+..++-+ ++.+++ ..+-++|..++.+...++.. + -++.++..+-+-+.+..+.
T Consensus 313 ~il~~l~mD----vLrvLs--s~dldvr~Ktldi~ldLvss--------r----Nvediv~~Lkke~~kT~~~------- 367 (948)
T KOG1058|consen 313 KILQGLIMD----VLRVLS--SPDLDVRSKTLDIALDLVSS--------R----NVEDIVQFLKKEVMKTHNE------- 367 (948)
T ss_pred HHHHHHHHH----HHHHcC--cccccHHHHHHHHHHhhhhh--------c----cHHHHHHHHHHHHHhcccc-------
Confidence 333333333 334444 35678999999999999883 1 2345555554444433211
Q ss_pred CCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHH
Q 002465 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (919)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l 423 (919)
+.++....+....+++...+..++ .+...+++.+.+++.|.|...-...+.++....+..++.- ..++..+
T Consensus 368 ---e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----~~ii~~l 438 (948)
T KOG1058|consen 368 ---ESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----ASIIEKL 438 (948)
T ss_pred ---ccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----HHHHHHH
Confidence 111123345667788888888886 5777888999999999998888888888888887776432 2344444
Q ss_pred HhhCC-CCCHhHHHHHHHHHHHhhhhhc
Q 002465 424 LNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (919)
Q Consensus 424 ~~~l~-d~~~~vr~~a~~~L~~l~~~~~ 450 (919)
+..+. -.++.+...|+|.+|.+++...
T Consensus 439 ~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 439 LETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 44442 2456778899999999998754
No 94
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=75.31 Aligned_cols=208 Identities=12% Similarity=0.186 Sum_probs=147.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHHhcHHHHHHhHHHHHHHHHhhCCC-CCHhHHHHHHHHHHHhhhhhchhH
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~-~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
+.+.+.+.++-.+.....|..|+. ..+.+.++.-....+|+.+|+..+++.|.| .+...|..|+..|+.+++.-+..+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 344555555555656778888887 445556665556678999999999999998 788999999999999999887766
Q ss_pred HhhhhhhhHHHHHhhccCCCChH-HHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 454 QNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 454 ~~~~~~~ll~~l~~~l~d~~~~~-v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
..+....+..++..-.| .... ++.++-.++..+....+... +..+ ..++...+...-..++..+..++.
T Consensus 366 -~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~----I~~i----~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 366 -FDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC----IVNI----SPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred -hchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH----HHHH----hhHHhcCcchHHHHHHHHHHHHHh
Confidence 67777777888887777 4554 44444455555555544222 2222 333333444445556667777777
Q ss_pred hhH-HHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 002465 533 SSQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 533 ~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (919)
... +.+.+.++.++|.+++...+ ....+|..|+-|+-.+...+|-+.+.||+.++-..-++
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~ 497 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLN 497 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHH
Confidence 665 56778899999999988743 34458999999999999999988899998877554443
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0015 Score=72.50 Aligned_cols=374 Identities=16% Similarity=0.226 Sum_probs=207.4
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhh--h--hcc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 145 LPFMFQCVSSD-SVKLQESAFLIFAQLSQYIG--D--TLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 145 l~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~--~--~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
+..|++.++.. ++. ..+..+..+|+.+. . .+. --++.++|.+...|++..+.++...|++|+..+++.+|.
T Consensus 169 ~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34444445443 443 34566666666532 1 111 136889999999999987899999999999999999875
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHh--HHHHHHHHHHhhcCCCcChhHHHHHHH
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLEEGTRHLAIE 296 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~li~~ll~~~~~~~~~~~vr~~al~ 296 (919)
....-.-...+|.+++.|.. -+--++..+++++|-.+...++..+-.- +...+.++ .. ....+++.|+.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~---IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DF-----FSi~aQR~Ala 316 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLT---IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DF-----FSIHAQRVALA 316 (1051)
T ss_pred hhheeecccchHHHHHhhhh---hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HH-----HHHHHHHHHHH
Confidence 42221112367777776654 2355788899999999988887654321 22222221 11 23556778888
Q ss_pred HHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCC-cch
Q 002465 297 FVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TIV 375 (919)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~ 375 (919)
.-..+|.. .+ ..-..++...+|.|.+.+...+.. ......-|+.+++..+... ..+
T Consensus 317 iaaN~Cks---i~---sd~f~~v~ealPlL~~lLs~~D~k-----------------~ies~~ic~~ri~d~f~h~~~kL 373 (1051)
T KOG0168|consen 317 IAANCCKS---IR---SDEFHFVMEALPLLTPLLSYQDKK-----------------PIESVCICLTRIADGFQHGPDKL 373 (1051)
T ss_pred HHHHHHhc---CC---CccchHHHHHHHHHHHHHhhccch-----------------hHHHHHHHHHHHHHhcccChHHH
Confidence 88888883 21 233458888999999888765322 2223344555555544211 111
Q ss_pred -----HHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhC------------------
Q 002465 376 -----PVASEQLPAYLAAP----EWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSF------------------ 427 (919)
Q Consensus 376 -----~~l~~~l~~~l~~~----~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l------------------ 427 (919)
+-++..+.+++.-. +-....+.+..+..++.+++..+...+. .|...+...+
T Consensus 374 dql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~ 453 (1051)
T KOG0168|consen 374 DQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRS 453 (1051)
T ss_pred HHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccC
Confidence 11222223332211 1223334444555555554432211111 1111111111
Q ss_pred ------------------CCC--------------------CHhHHHH------HHHHHHHhhh----hh----------
Q 002465 428 ------------------RDP--------------------HPRVRWA------AINAIGQLST----DL---------- 449 (919)
Q Consensus 428 ------------------~d~--------------------~~~vr~~------a~~~L~~l~~----~~---------- 449 (919)
-+. .|..|.. .-.+..++.+ ..
T Consensus 454 Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl 533 (1051)
T KOG0168|consen 454 PNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKL 533 (1051)
T ss_pred cHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhc
Confidence 000 0000000 0000111111 00
Q ss_pred -----------chhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHH--HHHHHHHHHhhcCC
Q 002465 450 -----------GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGK 516 (919)
Q Consensus 450 -----------~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~--~i~~~L~~~l~~~~ 516 (919)
.|+....|...++|.+++...+..++.||..+..+|.+++--...+.+...+. .+-..+-..+...+
T Consensus 534 ~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD 613 (1051)
T KOG0168|consen 534 NGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKD 613 (1051)
T ss_pred CCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCC
Confidence 12333578889999999998887789999999999999876655332222221 12233444556667
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHH
Q 002465 517 QMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAIL 553 (919)
Q Consensus 517 ~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l 553 (919)
..+...+++....+....++.|.+++ +-++-.+.++.
T Consensus 614 ~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~ 652 (1051)
T KOG0168|consen 614 LTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLS 652 (1051)
T ss_pred CeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHh
Confidence 77777788888888888888888776 34555555554
No 96
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0023 Score=70.10 Aligned_cols=349 Identities=11% Similarity=0.159 Sum_probs=195.9
Q ss_pred CCCCcchhHHHHHHhhcC-CChhHHHHHHHHHHHhhhh-hh-hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 002465 137 PENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQY-IG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (919)
Q Consensus 137 ~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~-~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (919)
.....|.++-.+++..-- .+...+. -+..+-.++.. -+ ..+.+.+--+...+.+-|++| +.-+|-..++.+..+=
T Consensus 50 nGe~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHP-NEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 50 NGEDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHP-NEYIRGSTLRFLCKLK 127 (948)
T ss_pred cCCCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCc-hHhhcchhhhhhhhcC
Confidence 335777887777776543 3434443 34444444333 22 123333445666777888998 8899999988776543
Q ss_pred HhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHH
Q 002465 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (919)
Q Consensus 214 ~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~ 293 (919)
+ + +++..+++.+..++.++..-+|..|+-++..+... ..++.|..++++...+. .+.++..++.
T Consensus 128 E-------~----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~----~e~DpsCkRN 191 (948)
T KOG1058|consen 128 E-------P----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL----TEQDPSCKRN 191 (948)
T ss_pred c-------H----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH----hccCchhHHH
Confidence 2 2 34445666667777889999999998888877654 34455666676664443 2456777777
Q ss_pred HHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCc
Q 002465 294 AIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT 373 (919)
Q Consensus 294 al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (919)
|+-.|..+-.. +.-+|+...+.. + +.|. ....-+..+.+...+..-+ .
T Consensus 192 AFi~L~~~D~E---------rAl~Yl~~~idq-------i---~~~~-----------~~LqlViVE~Irkv~~~~p--~ 239 (948)
T KOG1058|consen 192 AFLMLFTTDPE---------RALNYLLSNIDQ-------I---PSFN-----------DSLQLVIVELIRKVCLANP--A 239 (948)
T ss_pred HHHHHHhcCHH---------HHHHHHHhhHhh-------c---cCcc-----------HHHHHHHHHHHHHHHhcCH--H
Confidence 77666554431 111222221111 1 1110 0112223334443333211 1
Q ss_pred chHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH
Q 002465 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
--...+..+..++++.+..+++-|...+-.++... ..++.-...++..+. +.++-+|+-..+.-|..+....
T Consensus 240 ~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p-~alk~Aa~~~i~l~~---kesdnnvklIvldrl~~l~~~~---- 311 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP-TALKAAASTYIDLLV---KESDNNVKLIVLDRLSELKALH---- 311 (948)
T ss_pred HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH-HHHHHHHHHHHHHHH---hccCcchhhhhHHHHHHHhhhh----
Confidence 12234555566777777777776665554443332 122233333444333 2334445555555555555221
Q ss_pred HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh-------cCChhHHHHHHHH
Q 002465 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-------NGKQMVQEGALTA 526 (919)
Q Consensus 454 ~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~-------~~~~~v~~~~l~a 526 (919)
...+..++-.++..|.. ++-.||..+....-.+...-. +.+++..|-+-+. +.+...|...+.+
T Consensus 312 -~~il~~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 312 -EKILQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred -HHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 34566666677778887 889999998887777665433 3344444433222 1234567777777
Q ss_pred HHHHHHhhHHHHHHhHhhhhHHHHHHHhhc
Q 002465 527 LASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (919)
Q Consensus 527 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (919)
+...+-. |..+...++|.+...+.+.
T Consensus 383 ih~cav~----Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 383 IHACAVK----FPEVAATVVSLLLDFISDS 408 (948)
T ss_pred HHHHhhc----ChHHHHHHHHHHHHHhccC
Confidence 7776654 4557788999999988653
No 97
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.024 Score=64.54 Aligned_cols=390 Identities=13% Similarity=0.085 Sum_probs=193.3
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccc----cCcHHHHHHHHHHHhh
Q 002465 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL----TPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l----~~~l~~i~~~L~~~l~ 513 (919)
++..+|.++...+..+....+.-+.|.+.+.. + +++.++..|..|+..++..++.... ..-.+-++..+-..++
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a-~-~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLA-S-PSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhc-C-chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 45678888888888775555555556555544 4 5788999999999999988874333 2334445555555554
Q ss_pred cCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChh----hhhhh-H
Q 002465 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD----KFRDD-A 588 (919)
Q Consensus 514 ~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~----~~~~~-~ 588 (919)
... +..++-..+..+....+....|++.+++..++..+-...... ...-+..+..+.+..++. .+..+ .
T Consensus 646 ~~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~----~~~~~~ll~s~ik~~~~~~~~~~il~~~~ 719 (1014)
T KOG4524|consen 646 TSG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYS----CLQFFQLLHSIIKEMKKKYINDEILGHIA 719 (1014)
T ss_pred cCC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 322 112233444555555555667888888888887764322211 011111222222222210 01100 1
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCccc
Q 002465 589 KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668 (919)
Q Consensus 589 ~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (919)
++....-..+.+. ++.......+.. ..|...+.+......-.+-...-.++++.++.+ .+.+|.
T Consensus 720 d~~~~~~~k~l~e--------~p~~~~e~~n~~-------~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~-~e~ede 783 (1014)
T KOG4524|consen 720 DQHISQSTKVLNE--------LPTQVKELINDE-------NDLKDDLEPSNFEKDFASKLREPDDNEEPEERE-EEVEDE 783 (1014)
T ss_pred HHHHHHHHHHhhc--------chhhHHHhhhhH-------HHHHHhhhhHHHHHHhhhhccCCCcccCcCCCC-CCcccc
Confidence 1111100001110 111111111111 113333333332221110001111111111111 111110
Q ss_pred -chhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccccc-cc---HHHHHHHHccccCCcCChHHHHHHHHhHHHHHHH
Q 002465 669 -ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF-PW---IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (919)
Q Consensus 669 -~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~-p~---~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 743 (919)
+... | ++... +. +.+++.-...++++. +-.+|-.++.++...+..
T Consensus 784 ns~~~--d---------------------------~ep~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~ 833 (1014)
T KOG4524|consen 784 NSEYT--D---------------------------TEPILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPL 833 (1014)
T ss_pred ccCCC--C---------------------------CCCCCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHH
Confidence 0000 0 00111 11 234444445556654 567888888888776655
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 002465 744 AKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASS 823 (919)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~ 823 (919)
+.. .++.+-++.+..+|.++..+..+ ++-++..++.++..+...+|.++....+..++..+...++...
T Consensus 834 La~----------~~n~LlPlvhq~W~~vie~~~~k-~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 834 LAT----------YHNLLLPLVHQTWPSVIECLLCK-DPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred Hhc----------cchhHhHHHHhhhhHHHHHHhcC-chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 34457788999999999988654 7778889999999999999998766666666666655555544
Q ss_pred HHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHccccc------hhhHHHHHHhHhhhhcCCCCHH
Q 002465 824 SRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF------LPFFDELSSYLTPMWGKDKTAE 897 (919)
Q Consensus 824 ~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~ 897 (919)
-|.... +-....+...+=..+++.+++-. ...+..+.....-++.--.+..
T Consensus 903 ~~~~~~-----------------------~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~ 959 (1014)
T KOG4524|consen 903 ARTILK-----------------------ELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQV 959 (1014)
T ss_pred HHhhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHH
Confidence 111110 11122233444344444444321 1222223333333333345667
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 002465 898 ERRIAICIFDDVAEQCRE 915 (919)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~ 915 (919)
....|-++|.+.+++-|+
T Consensus 960 Lqe~~~s~F~~~V~~ekp 977 (1014)
T KOG4524|consen 960 LQEIARSCFLDLVPVEKP 977 (1014)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 778899999999888773
No 98
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=98.18 E-value=0.00012 Score=65.51 Aligned_cols=154 Identities=29% Similarity=0.409 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhcch-HhHHHHHHHHHHHHHhcc--cCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhh-hhhhhhc
Q 002465 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (919)
Q Consensus 103 ~ik~~ll~~l~~e~~-~~vr~~~~~~i~~i~~~~--~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~-~~~~~~~ 178 (919)
.||..++.+|+.+.. ...-+.++++++.++... .+++.|++|...+.... ..++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 578889999987543 345566677777776654 47789999998888765 2222 56999999888 5555667
Q ss_pred cccHHHHHHHHHHhhCCCCChHHH--HHHH-HHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 002465 179 TPHLKHLHAVFLNCLTNSNNPDVK--IAAL-NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (919)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr--~~a~-~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~-~~~~~a~~~ 254 (919)
.++++.+++.+.+.|.+|.+.++. ..|+ .++...+..++.....+.++.++|.+++.+.++++.+.+ ....++++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 789999999999999988433333 3444 344555665655556688899999999999999988777 677777777
Q ss_pred HHHHHc
Q 002465 255 LIELAG 260 (919)
Q Consensus 255 l~~l~~ 260 (919)
+-.+..
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 766654
No 99
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.18 E-value=0.037 Score=65.98 Aligned_cols=422 Identities=14% Similarity=0.126 Sum_probs=209.7
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHH
Q 002465 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (919)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (919)
+.++..+. ++...+|..+..|++.++..+..--.-|+....+-.-+.++...+|++|+.++|..+-..++. ..+.
T Consensus 819 k~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~----~~qy 893 (1692)
T KOG1020|consen 819 KLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL----IFQY 893 (1692)
T ss_pred HHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH----HHHH
Confidence 35556666 578999999999999999875433355777777777788888899999999999888776654 5566
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC-cH
Q 002465 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-PR 264 (919)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~ 264 (919)
...+.+.+.|+ ...||..+++.+..++...++ |.. +|.+..-+..-+++++..+..-+++.|.++=-.. +.
T Consensus 894 Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd------f~~-i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 894 YDQIIERILDT-GVSVRKRVIKILRDICEETPD------FSK-IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC------hhh-HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 66667777887 899999999999999987542 222 2233333333344544447777777776543211 11
Q ss_pred -----HHHHhH---HHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 002465 265 -----FLRRQL---VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (919)
Q Consensus 265 -----~~~~~~---~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~ 336 (919)
....-+ ..++.....+ .+ +..+..-...+..-..........|-........+.-+...++......+.+
T Consensus 966 ~~d~~~~~~kI~~~~~vv~~~~d~-~~-~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen 966 VNDQPAKARKISLEVDVVMSQVDL-MN-DWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHH-hc-ChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence 011111 1111111111 11 1122211111111110000000011111111222222233333333333211
Q ss_pred cccccCCCCCccccCCccc-chHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHhcHH
Q 002465 337 PLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-----EWQKHHAALIALAQIAEGCAK 410 (919)
Q Consensus 337 ~~w~~~~~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~r~aal~~l~~i~~~~~~ 410 (919)
. .. +++...+ .....+|..++...| .-+.+.-.-.+..++.+. ..+.-+..+..|..+..-...
T Consensus 1044 ~-------~~--~~~~~~~~~~~lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~ 1113 (1692)
T KOG1020|consen 1044 D-------MN--EEESEVRLLAYLSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVAN 1113 (1692)
T ss_pred h-------hh--cccchhHHHHHHHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhcc
Confidence 0 00 1111122 234456666666554 333322222333444433 122222222223222221111
Q ss_pred HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh-------hccCCC----ChHHHH
Q 002465 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG-------AMDDFQ----NPRVQA 479 (919)
Q Consensus 411 ~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~-------~l~d~~----~~~v~~ 479 (919)
.-..++..+=..++..+---+......|.-|++.++......+ .....++...++ ..++ . +...-.
T Consensus 1114 ~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~--~~v~~cf~~~~k~le~~k~s~~e-n~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1114 PSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGA--KVVKACFSCYLKLLEVIKSSNNE-NADIVNFPKLQ 1190 (1692)
T ss_pred chHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHhcccc-ccchhhhHHHH
Confidence 1123344444444444433445555667778888887543322 223333333332 2222 2 223345
Q ss_pred HHHHHHHHHHhcCCC-------cc----ccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHH
Q 002465 480 HAASAVLNFSENCTP-------EI----LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPF 548 (919)
Q Consensus 480 ~a~~al~~l~~~~~~-------~~----l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~ 548 (919)
+...+++-|++.+.- .. .....+.++..|.-.....+..+|..|+.++|.++-.-+.-|.. +.+...
T Consensus 1191 RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~--~~v~nl 1268 (1692)
T KOG1020|consen 1191 RSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTS--REVLNL 1268 (1692)
T ss_pred HHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhh--HHHHHH
Confidence 677778888775421 11 11223444444444556667899999999999998765544321 344455
Q ss_pred HHHHHhhcC
Q 002465 549 LKAILVNAT 557 (919)
Q Consensus 549 l~~~l~~~~ 557 (919)
+..++...+
T Consensus 1269 y~~ila~~n 1277 (1692)
T KOG1020|consen 1269 YDEILADDN 1277 (1692)
T ss_pred HHHHHhhhc
Confidence 555554433
No 100
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.17 E-value=5.4e-06 Score=73.59 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=88.5
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccc
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l 497 (919)
+++.+.+.+.+.++.+|..++++|+.++...+... ..+.. .++|.+.+.+.+ ++++++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56777778888899999999999999998754443 34444 999999999999 8999999999999999987642111
Q ss_pred cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 498 ~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
..+-.++++.+.+.+++.+..+++.++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122346888899999999999999999998875
No 101
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0019 Score=66.79 Aligned_cols=188 Identities=17% Similarity=0.188 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcH-HHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH------Hhhhhh
Q 002465 387 AAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL------QNQFHP 459 (919)
Q Consensus 387 ~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~------~~~~~~ 459 (919)
.+.+--+|.+|+.+++...-+.. .....+...-...++..+.|..-.+|..++|++|.+...+...+ +..+..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 34556678888888776554332 22334556667778888899999999999999999998764322 223344
Q ss_pred hhHHHHHhh--ccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHh-----hcCChhHHHHHHHHHHHHHH
Q 002465 460 QVLPALAGA--MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL-----QNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 460 ~ll~~l~~~--l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l-----~~~~~~v~~~~l~al~~l~~ 532 (919)
.++...+.. ..+..+.+|+.++..+|+++...+.+ ...+-+..+++.=...+ -...-.||-+++.++|.+.+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 444443332 11223678999999999998876652 23344444444322222 12346799999999999987
Q ss_pred hhHHHH--HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh
Q 002465 533 SSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 533 ~~~~~~--~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~ 578 (919)
.-.-.| .++.+.+++.|..++..+.+ ..+|.+|-.++...++.
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~N---FKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKN---FKVRIRAAAALSVPGKR 604 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhcc---ceEeehhhhhhcCCCCc
Confidence 533222 46888999999998866543 34666665555554443
No 102
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.17 E-value=0.026 Score=64.65 Aligned_cols=373 Identities=16% Similarity=0.204 Sum_probs=198.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHh
Q 002465 147 FMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (919)
Q Consensus 147 ~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (919)
.+..+++.++... ..++.+|..+++...-.....-..+++.+...|..+ +.++...++.+|..+.-+-++.... .-.
T Consensus 254 k~~~l~~kQeqLl-rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m-~~~ 330 (708)
T PF05804_consen 254 KLQTLIRKQEQLL-RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEM-AES 330 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHH-HHc
Confidence 3334444444333 477888888888765444434567888899999887 8899999999888887554321111 112
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH--HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 227 ~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
..+|. +...+..++.+.+..++.+|..+... ...++.+. .+++.+..++.+ +..+..++.++..++..
T Consensus 331 giV~k----L~kLl~s~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~d 400 (708)
T PF05804_consen 331 GIVEK----LLKLLPSENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMD 400 (708)
T ss_pred CCHHH----HHHHhcCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccC
Confidence 33444 44455577888999999999988643 22344333 366777777643 45667788888888874
Q ss_pred hcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHH------HcCCCcchHHH
Q 002465 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI------ALGGNTIVPVA 378 (919)
Q Consensus 305 ~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~------~~~~~~~~~~l 378 (919)
.+. +..- -.+..+|.+++++....+.. .. .. ....+-.++. .+-....++.+
T Consensus 401 d~~-----r~~f-~~TdcIp~L~~~Ll~~~~~~--------------v~-~e-liaL~iNLa~~~rnaqlm~~g~gL~~L 458 (708)
T PF05804_consen 401 DEA-----RSMF-AYTDCIPQLMQMLLENSEEE--------------VQ-LE-LIALLINLALNKRNAQLMCEGNGLQSL 458 (708)
T ss_pred Hhh-----HHHH-hhcchHHHHHHHHHhCCCcc--------------cc-HH-HHHHHHHHhcCHHHHHHHHhcCcHHHH
Confidence 211 1110 11246677777665432110 00 00 0011111110 00001122222
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH---HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch--hH
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP--DL 453 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~---~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~--~~ 453 (919)
+ ...++..+ ...+..+..++.+-+. .+.+++..++..+.. ..+.. ..+.|||.++.-.-+ .+
T Consensus 459 ~---~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~---~~~ee---~~vE~LGiLaNL~~~~ld~ 525 (708)
T PF05804_consen 459 M---KRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS---GDSEE---FVVECLGILANLTIPDLDW 525 (708)
T ss_pred H---HHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc---CCcHH---HHHHHHHHHHhcccCCcCH
Confidence 2 22233222 1223455666655432 233444444443322 22443 445555555543212 23
Q ss_pred Hhhhh--hhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcH--HHHHHHHHHHhhcC--ChhHHHHHHHH
Q 002465 454 QNQFH--PQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNG--KQMVQEGALTA 526 (919)
Q Consensus 454 ~~~~~--~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~i~~~L~~~l~~~--~~~v~~~~l~a 526 (919)
...+ ..++|.+.+.|... ....+.-.++..++.++..-. -.+.+ .++++.|..++... +.++.-..+.+
T Consensus 526 -~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~---~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 526 -AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE---CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred -HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH---HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 2333 37889998888763 234577777777777764321 11222 35677777777654 36677777888
Q ss_pred HHHHHHhhHHHHHHh--HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 002465 527 LASVADSSQEHFQKY--YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (919)
Q Consensus 527 l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~ 576 (919)
+..+...-... ... -..+...+..++.+ .+ ..+|..|=.|+..++
T Consensus 602 f~~ll~h~~tr-~~ll~~~~~~~ylidL~~d-~N---~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 602 FYQLLFHEETR-EVLLKETEIPAYLIDLMHD-KN---AEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHHcChHHH-HHHHhccchHHHHHHHhcC-CC---HHHHHHHHHHHHHHH
Confidence 88877663321 111 14566777777643 22 345555555555554
No 103
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.02 Score=62.48 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=169.6
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCC--hhHHHHHHHHHHHhhhhhhhhccccHH
Q 002465 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS--VKLQESAFLIFAQLSQYIGDTLTPHLK 183 (919)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~--~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (919)
+.+.+-|.+ .++.-..-+-++|+.+...+..+... +.+...+.|++ .-+|+.|..+|-.+.+..++.+.+ .
T Consensus 114 n~iknDL~s-rn~~fv~LAL~~I~niG~re~~ea~~----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~--~ 186 (938)
T KOG1077|consen 114 NSIKNDLSS-RNPTFVCLALHCIANIGSREMAEAFA----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNP--G 186 (938)
T ss_pred HHHHhhhhc-CCcHHHHHHHHHHHhhccHhHHHHhh----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccCh--h
Confidence 333344443 35555555668888887765442222 33334454443 467888888888888887765433 4
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhc-------------CChHHHHH
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------------GNEATAQE 250 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~-------------~~~~~~~~ 250 (919)
...+.+...|.|. +-.|-.++...+..++...+ +.+..-+|..+..+...... +.|-....
T Consensus 187 ~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p-----~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNP-----ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred hHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCC-----HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 5666777788887 67777777777776666543 44555555555544433221 12222333
Q ss_pred HHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhH----HHHH--HHHHHHHHhhhcccchhhhcchhhHHHHHH
Q 002465 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT----RHLA--IEFVITLAEARERAPGMMRKLPQFINRLFA 324 (919)
Q Consensus 251 a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~v----r~~a--l~~l~~l~~~~~~~~~~~~~~~~~~~~li~ 324 (919)
.+..|..+-..........+..+.+.++..........++ ...| ++.+.-+... ..-++.+.+.+.
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~--------D~e~~ll~~~~~ 332 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL--------DSEPELLSRAVN 332 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc--------CCcHHHHHHHHH
Confidence 3333332211111111111222222222222110011111 0111 1222222211 112234444444
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 002465 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQ 403 (919)
Q Consensus 325 ~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~ 403 (919)
.|-+.+... |.+.+..+.+.+..++..-...+.+..=...+...++ ..|..+|.-|+..|..
T Consensus 333 ~Lg~fls~r-----------------E~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 333 QLGQFLSHR-----------------ETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred HHHHHhhcc-----------------cccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 444444332 3345666666666665442111112222333334444 7788999999999988
Q ss_pred HHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh---------------hhHHHHHhh
Q 002465 404 IAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP---------------QVLPALAGA 468 (919)
Q Consensus 404 i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~---------------~ll~~l~~~ 468 (919)
++.. .....|+.-+++.+...++.+|+....-++-+++.+..+. .=|.+ ++.-.+++.
T Consensus 396 mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy-~WyVdviLqLiriagd~vsdeVW~RvvQi 468 (938)
T KOG1077|consen 396 MCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY-SWYVDVILQLIRIAGDYVSDEVWYRVVQI 468 (938)
T ss_pred Hhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-chhHHHHHHHHHHhcccccHHHHHHhhee
Confidence 8764 3445667777777777788888776666666666555443 22222 233333333
Q ss_pred ccCCCChHHHHHHHHHHHHHH
Q 002465 469 MDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 469 l~d~~~~~v~~~a~~al~~l~ 489 (919)
.-+ ++.++..|+..+-..+
T Consensus 469 VvN--nedlq~yaak~~fe~L 487 (938)
T KOG1077|consen 469 VVN--NEDLQGYAAKRLFEYL 487 (938)
T ss_pred Eec--chhhhHHHHHHHHHHH
Confidence 333 6777777776665544
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.004 Score=61.25 Aligned_cols=293 Identities=15% Similarity=0.199 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-ccc----cHHHHHHHHHHhhCCCCC
Q 002465 124 LCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTP----HLKHLHAVFLNCLTNSNN 198 (919)
Q Consensus 124 ~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-~~~----~~~~l~~~l~~~l~~~~~ 198 (919)
...++..+.+..++....|.++|.++..+..++..++..++.-++.+.+.+... ... .-..+++.++.++... +
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-d 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-D 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-c
Confidence 456777777777776678999999999999999999999999999999876522 111 2356888888999887 8
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHH-HHHH--HHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhH-HHHH
Q 002465 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRT--LTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVV 274 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~-il~~--l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li 274 (919)
.+|-.+|.+.+..+...- ..+..++|. ++.- +..+...-+.-.|...++.+.++.+..+......- ..++
T Consensus 142 deVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 899999999998877541 111111111 0000 01111122445678889999999888876554332 2455
Q ss_pred HHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCC
Q 002465 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352 (919)
Q Consensus 275 ~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~ 352 (919)
..+..-+.. ..+.-|+..+++....+++. .+-.+|+ +.+++.+...+...+.+|
T Consensus 216 dlLeaElkG-teDtLVianciElvteLaet--------eHgreflaQeglIdlicnIIsGadsdP--------------- 271 (524)
T KOG4413|consen 216 DLLEAELKG-TEDTLVIANCIELVTELAET--------EHGREFLAQEGLIDLICNIISGADSDP--------------- 271 (524)
T ss_pred HHHHHHhcC-CcceeehhhHHHHHHHHHHH--------hhhhhhcchhhHHHHHHHHhhCCCCCc---------------
Confidence 555554432 24566888999999999884 1222333 346666666655443222
Q ss_pred cccchHHHHHHHHHHHcCCCcc-----------hHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH--HHHHhHHHH
Q 002465 353 SNYSVGQECLDRLAIALGGNTI-----------VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQV 419 (919)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~~-----------~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~--~~~~~l~~l 419 (919)
+.. ...+-.+++.+|...+ ++..+.-..+++.++++....+|+.++|.+...... .....-+.-
T Consensus 272 --fek-fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 272 --FEK-FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred --HHH-HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 111 1122223333332211 122222233456678889999999999998765432 222223334
Q ss_pred HHHHHhhCCCCCH-hHHHHHHHHHHHhhhhhc
Q 002465 420 LSMVLNSFRDPHP-RVRWAAINAIGQLSTDLG 450 (919)
Q Consensus 420 ~~~l~~~l~d~~~-~vr~~a~~~L~~l~~~~~ 450 (919)
...++....|.+. .-+.+++.+|..++..+.
T Consensus 349 aehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 349 AEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 4444444444432 345677888888876543
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.13 E-value=5.4e-06 Score=61.05 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=50.2
Q ss_pred HhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002465 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (919)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l 488 (919)
|.||..|+++||.++...+... ..+.+.++|.+...|.| +++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 6899999999999998887777 78999999999999999 8889999999999864
No 106
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.12 E-value=0.014 Score=63.57 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHHHHH-HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHH
Q 002465 388 APEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPAL 465 (919)
Q Consensus 388 ~~~~~~r~aal~~l~~i~~~~~~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l 465 (919)
..+...+.||+.++-.++......-. ..-..+...+++.+.||+..|..+++-+|.++...+++.- +.+ ....+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHH
Confidence 45677889999998887766543111 1223567778888899999999999999999998887644 344 45788899
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHhcCCCcc-ccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 466 ~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
.+.+.+ +++.+|..+.|+|..+.-++.... ..++-.--...+..+.+++++.|++.++..+-.+.....+
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 999998 889999999999999987776332 2233344466777788999999999999999888765443
No 107
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.011 Score=64.14 Aligned_cols=295 Identities=17% Similarity=0.169 Sum_probs=171.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhh
Q 002465 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (919)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~ 312 (919)
.+-+.....+.++.+|..|++.|..+.+.. .+. ..+.+.....+ .|.+++||..|+..+...... .|...
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~---~~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn~---~p~~~ 269 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLS---KACYSRAVKHL--SDDYEDVRKAAVQLVSVWGNR---CPAPL 269 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc--ccc---HHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhc---CCCcc
Confidence 333555667889999999999999887722 111 22333333444 356789999998776666552 22111
Q ss_pred -hc--chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC
Q 002465 313 -RK--LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP 389 (919)
Q Consensus 313 -~~--~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~ 389 (919)
+. -.......+..+...+.+. ++..+-.|.+.|+.+.+.- + ..+.+.+.+.+-+.
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~-----------------sl~VRV~AaK~lG~~~~vS--e---e~i~QTLdKKlms~ 327 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDR-----------------SLSVRVEAAKALGEFEQVS--E---EIIQQTLDKKLMSR 327 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcC-----------------ceeeeehHHHHhchHHHhH--H---HHHHHHHHHHHhhh
Confidence 11 1123444444444444332 3445555666666554321 1 11222332222221
Q ss_pred C--HH---HHHHHHHHHHHHHHh-------cHHHHHHhHHHHH-----HHHHhhCCCCCHhHHHHHHHHHHHhhhhhchh
Q 002465 390 E--WQ---KHHAALIALAQIAEG-------CAKVMVKNLEQVL-----SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (919)
Q Consensus 390 ~--~~---~r~aal~~l~~i~~~-------~~~~~~~~l~~l~-----~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (919)
. |+ .|-..+..=|..+.| ..+.....-..|+ -.++.++.|+--.||.+|...++.++..-+
T Consensus 328 lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP-- 405 (823)
T KOG2259|consen 328 LRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP-- 405 (823)
T ss_pred hhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--
Confidence 1 21 111122111111111 1111111122333 367778999999999999999999987653
Q ss_pred HHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
.|....+..|+..++| ....||..|..+|..+..+.. .-+..++.++..+.+.+..+|+.+-..++..--
T Consensus 406 ---~FA~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 406 ---GFAVRALDFLVDMFND-EIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred ---CcHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 4667888889999999 888999999999999988743 234456677778888999999887777665322
Q ss_pred hhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhC
Q 002465 533 SSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (919)
Q Consensus 533 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~ 580 (919)
.. ...+..++..+...+.....+ |-..+.|++.|++.-+
T Consensus 476 ~d----~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 476 SD----LECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred Cc----HHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 21 124556666666666554322 3335778888876443
No 108
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.03 Score=62.17 Aligned_cols=362 Identities=15% Similarity=0.145 Sum_probs=194.2
Q ss_pred CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
..-.+++=.+..++++.+...|.....+++.+.....+. --+.+.+.+-+... +...|..|+++|..++..-
T Consensus 60 ~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-----iivtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~-- 131 (865)
T KOG1078|consen 60 TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-----IIVTSSLMKDMTGK-EDLYRAAAIRALCSIIDGT-- 131 (865)
T ss_pred hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-----hhhhHHHHhhccCC-CcchhHHHHHHHHhhcCcc--
Confidence 344577777888999999988888877777766543322 12334444444443 6788999999888777531
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHH
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l 298 (919)
.++.+=..+.+++-+..+.++..++-.=..+..........+...+.+.. .+.+.-++.-|+.++
T Consensus 132 ---------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~------~s~~~m~QyHalglL 196 (865)
T KOG1078|consen 132 ---------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAV------NSDNIMVQYHALGLL 196 (865)
T ss_pred ---------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhcc------CcHHHHHHHHHHHHH
Confidence 11123334444455556665555543333444444444444444433311 112222344455555
Q ss_pred HHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHH-HcCC-CcchH
Q 002465 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-ALGG-NTIVP 376 (919)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~-~~~~-~~~~~ 376 (919)
..+..+. .-.+.+++..+..... . ++ .|...+-+.+. .+.. .....
T Consensus 197 yqirk~d----------rla~sklv~~~~~~~~---~-----------------~~--~A~~~lir~~~~~l~~~~~~~s 244 (865)
T KOG1078|consen 197 YQIRKND----------RLAVSKLVQKFTRGSL---K-----------------SP--LAVCMLIRIASELLKENQQADS 244 (865)
T ss_pred HHHHhhh----------HHHHHHHHHHHccccc---c-----------------ch--hHHHHHHHHHHHHhhhcccchh
Confidence 5554421 1112222222221000 0 00 11111111111 1110 22344
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhh
Q 002465 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (919)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (919)
.+.+++..++.+..-.+-.-+..++-.+....+..+. +.+..+...+..+.+.+|.+|..+|.+++...+..+ .
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-~- 318 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-T- 318 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-c-
Confidence 5778888888877766666666665555544443332 355666667788999999999999999997765433 1
Q ss_pred hhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 457 ~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
..-..+-+.+.| .| |..|..++..++..... .-.+.++..+.....+-+...+.-+..++.+++...+.
T Consensus 319 ---~cN~elE~lItd-~N---rsIat~AITtLLKTG~e----~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 319 ---VCNLDLESLITD-SN---RSIATLAITTLLKTGTE----SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred ---ccchhHHhhhcc-cc---cchhHHHHHHHHHhcch----hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 111223334444 33 34566777777765542 23555565555555555555555566666666655443
Q ss_pred HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhh
Q 002465 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (919)
Q Consensus 537 ~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~ 579 (919)
. ...+++.|.++|.+.+ ..+.+...++++..++...
T Consensus 388 k----~~~~m~FL~~~Lr~eG---g~e~K~aivd~Ii~iie~~ 423 (865)
T KOG1078|consen 388 K----HTVMMNFLSNMLREEG---GFEFKRAIVDAIIDIIEEN 423 (865)
T ss_pred H----HHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHhC
Confidence 2 2445566666665422 3345566778877775533
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0027 Score=70.28 Aligned_cols=420 Identities=16% Similarity=0.205 Sum_probs=231.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHH
Q 002465 28 ISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSL 104 (919)
Q Consensus 28 l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i 104 (919)
+....++++..|.-|-.-+..+.- +....+++.-+. ++.++.+|..+++...++...+. . ......+
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~------~~~~~gl 161 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-D------LVEDSGL 161 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-h------hccccch
Confidence 444566788888888877665443 123344444443 36789999999999988875531 0 1111222
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch----hHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccc
Q 002465 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE----LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (919)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~----ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (919)
-..|-..+. ++++.|-..+..++..|....-. ..-.+ ++..++..+..-+. =+-+.++..+.++.+..- .
T Consensus 162 ~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~-~ 235 (734)
T KOG1061|consen 162 VDALKDLLS-DSNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDS-R 235 (734)
T ss_pred hHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCc-h
Confidence 233333333 56777777777777777764321 22233 33333333332211 123566677777766542 2
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (919)
....++..+...|++. +..|...+.+.+..++.++.. .....+...-|.+ ..++.. .+...--++.-+.-+..
T Consensus 236 ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl----~tlls~-~~e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 236 EAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPL----VTLLSS-ESEIQYVALRNINLILQ 308 (734)
T ss_pred hHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccc----eeeecc-cchhhHHHHhhHHHHHH
Confidence 3567777777888887 888889999999999887642 1112222222222 222223 33666667777777777
Q ss_pred cCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 002465 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (919)
Q Consensus 261 ~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~ 340 (919)
..|..+...+..++- + -...-.++..-++++..++.. ..+.+++..+..+-.+.+
T Consensus 309 ~~p~~~~~~~~~Ff~---k----ynDPiYvK~eKleil~~la~~------------~nl~qvl~El~eYatevD------ 363 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFC---K----YNDPIYVKLEKLEILIELAND------------ANLAQVLAELKEYATEVD------ 363 (734)
T ss_pred hChHHHHhHhHeeee---e----cCCchhhHHHHHHHHHHHhhH------------hHHHHHHHHHHHhhhhhC------
Confidence 777766554433221 1 122344666667777776661 233445554444332221
Q ss_pred cCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHH
Q 002465 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (919)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l 419 (919)
....+-+..+++.++.... +. ..++..+.++++ ..+.-+ ..+...+..+...++ ...+.+
T Consensus 364 -----------~~fvrkaIraig~~aik~e-~~--~~cv~~lLell~~~~~yvv-qE~~vvi~dilRkyP----~~~~~v 424 (734)
T KOG1061|consen 364 -----------VDFVRKAVRAIGRLAIKAE-QS--NDCVSILLELLETKVDYVV-QEAIVVIRDILRKYP----NKYESV 424 (734)
T ss_pred -----------HHHHHHHHHHhhhhhhhhh-hh--hhhHHHHHHHHhhccccee-eehhHHHHhhhhcCC----Cchhhh
Confidence 1122335566666665554 22 334444444444 122211 122222222222222 222455
Q ss_pred HHHHHhhCCC-CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc
Q 002465 420 LSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (919)
Q Consensus 420 ~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (919)
++.+...+.. .+|..|.+-.|.+|+.++.++. ...++..+++.+.| ....|+..-..+..+++-..++
T Consensus 425 v~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~d-E~~~Vql~LLta~ik~Fl~~p~---- 493 (734)
T KOG1061|consen 425 VAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKD-ETAEVQLELLTAAIKLFLKKPT---- 493 (734)
T ss_pred hhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCc----
Confidence 6655555532 4789999999999999988765 34778888888888 6677876665555444333221
Q ss_pred CcHHHHHHHHHHH-h-hcCChhHHHHHHHH
Q 002465 499 PYLDGIVSKLLVL-L-QNGKQMVQEGALTA 526 (919)
Q Consensus 499 ~~l~~i~~~L~~~-l-~~~~~~v~~~~l~a 526 (919)
--..++..++.. . +..++.+|..++.-
T Consensus 494 -~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 494 -ETQELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred -cHHHHHHHHHhhhhccccChhhhhhHHHH
Confidence 234455555553 2 23456788776543
No 110
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.06 E-value=2.4e-05 Score=72.40 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=95.5
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh----------------cccc
Q 002465 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT----------------LTPH 181 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~----------------~~~~ 181 (919)
+.+|++++.+++.++.+++| ..||++++.+.+.+++ ++.....++.+|..+.+.+.+. +...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 7899999999999988 4777888999999998876531 2335
Q ss_pred HHHHHHHHHHhhCCCCC---hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002465 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (919)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l 255 (919)
.+.+++.+.+.+....+ .++...+++++.+++.+++ ...+.. ..+++.+...++ ++..+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 67788888888876522 7888999999999998764 222211 125555555554 445577787775
No 111
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.12 Score=67.22 Aligned_cols=556 Identities=16% Similarity=0.136 Sum_probs=272.8
Q ss_pred ccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 002465 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLI 256 (919)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~-~~~~~~~a~~~l~ 256 (919)
+.||++-++..+..+|+. ++++...+++.|.-++..+....-...+.+..+.+++.|...++.. +......|+.+|+
T Consensus 715 Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 715 LLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 567888999888888886 6899999999998888766322222234455566777777766643 5667788999999
Q ss_pred HHHccCcHHHHH-----------------------------hHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcc
Q 002465 257 ELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (919)
Q Consensus 257 ~l~~~~~~~~~~-----------------------------~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~ 307 (919)
++....-.++.+ .+.+.+......+.....+...|..|...+.......-.
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~ 872 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVN 872 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHh
Confidence 887655222111 122344444444444444667777777776655442100
Q ss_pred cchhhhcchhhHHHHHHHHHHh---hcCCCCCcccccCCCCCccccCCcccchHHHHHH----HHHHHcCCCcchHHHHH
Q 002465 308 APGMMRKLPQFINRLFAILMSM---LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD----RLAIALGGNTIVPVASE 380 (919)
Q Consensus 308 ~~~~~~~~~~~~~~li~~l~~~---l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~----~l~~~~~~~~~~~~l~~ 380 (919)
.+ ..+......+.+..... ..+..+...|.... ......+...++. .+......+++.+...+
T Consensus 873 ~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~-------~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~ 942 (3550)
T KOG0889|consen 873 LS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTER-------YKSQDYSDRSIFVNALISLFYATSCKELRDEAQD 942 (3550)
T ss_pred hh---ccchhhHHHHHHhhcchHHHhhHhhhcccccccc-------ccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHH
Confidence 11 01122222222222211 11100000010000 0000001111111 00000000112221111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhcH-------HH-H-HHh--HHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhh
Q 002465 381 QLPAYLAAPEWQKHHAALIALAQIAEGCA-------KV-M-VKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~i~~~~~-------~~-~-~~~--l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
.+... .|.-++.+.-....+.. +. . ... -.-++++|...+...+..++.+...++..+....
T Consensus 943 ~~~~i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~ 1015 (3550)
T KOG0889|consen 943 FLEAI-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTS 1015 (3550)
T ss_pred HHHHH-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 11111 11112111111111100 00 0 001 1246788888899999999999988888766543
Q ss_pred ch-------hHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHH-
Q 002465 450 GP-------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE- 521 (919)
Q Consensus 450 ~~-------~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~- 521 (919)
.. ....+....+++.+++...+ +.+.-|...+.+|..+++.++...+..+...++..+.-.+.+....+..
T Consensus 1016 ~~~l~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~ 1094 (3550)
T KOG0889|consen 1016 TLILGSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSL 1094 (3550)
T ss_pred HHhhcCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccc
Confidence 21 12235677888888888888 7777788888888888888774444455666677777766554322111
Q ss_pred ---HHHHHHHHHHHhhH------HHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHH
Q 002465 522 ---GALTALASVADSSQ------EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (919)
Q Consensus 522 ---~~l~al~~l~~~~~------~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~ 592 (919)
.+-..+-.+....- +.-......++..+..-+.+.+ ..+|..+..++..++...|++ +.+++
T Consensus 1095 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN----~~VR~~~~~~L~~i~~~s~~~-----v~~L~ 1165 (3550)
T KOG0889|consen 1095 PLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN----SDVREFSQKLLRLISELSGKS-----VVKLL 1165 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHcCCc-----HHHHH
Confidence 11122222111111 1111222333333333333322 268888889998887766633 22333
Q ss_pred HHHHHHh-----cCCCCC-CCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCc
Q 002465 593 EVLMSLQ-----GSQMET-DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDD 666 (919)
Q Consensus 593 ~~l~~l~-----~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (919)
..+.++. ...... .-+..-..+.++ ..|...|+.+-.|-+.+.......... . +.+
T Consensus 1166 ~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~-~fC~~l~p~~f~~~~~l~~l~~~~~~L------a-----------~~~ 1227 (3550)
T KOG0889|consen 1166 EPFKDVLLSPIFKKPLRALPFTIQIGHLDAI-TFCLSLGPCLFDFTEELYRLKRFLIAL------A-----------DAE 1227 (3550)
T ss_pred HHHHHHHhccccccccccCCHHHHhhhHHHH-HHHHHcCCcccCchHHHHHHHHHHHHh------h-----------hhh
Confidence 3222221 110000 001111222222 355567777777766655533222111 0 011
Q ss_pred ccchh-ccCCeeeeeechhHHHHHHHHHHHHHHHHHhcc---cccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHH
Q 002465 667 SMETI-TLGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (919)
Q Consensus 667 ~~~~~-~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~---~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 742 (919)
+++.. .......+..+....-|..++++++......+- ...||-+.++..+.+.+... +.++...+..++.....
T Consensus 1228 ~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1228 EDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGLRKVLA 1306 (3550)
T ss_pred hhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHHHhhhh
Confidence 11111 111223333343334466777778777666543 35788899999998888754 67888877777655442
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002465 743 SAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (919)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i 796 (919)
- .+..-++.++....+++..+.+-.. ...+.+..+..+.
T Consensus 1307 ~-------------~~~~~ke~lq~~lrplL~~l~d~~~--lsv~~l~~ls~l~ 1345 (3550)
T KOG0889|consen 1307 Q-------------DVKLPKELLQSHLRPLLMNLSDHNN--LSVPGLEGLSRLL 1345 (3550)
T ss_pred c-------------cccccHHHHHhhHHHHHHhhhHhhh--hhHHHHHHHHHHH
Confidence 2 1112355666666556656543222 2234444444444
No 112
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0036 Score=65.46 Aligned_cols=279 Identities=17% Similarity=0.177 Sum_probs=160.9
Q ss_pred HHHHHHHhcccCCCCc-----chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChH
Q 002465 126 DTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD 200 (919)
Q Consensus 126 ~~i~~i~~~~~~~~~w-----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 200 (919)
.-++.+++...+..-| .+++..+.+-..+++...|..|+.+|+..+...|+....|...++..+..+|-|+.+.+
T Consensus 236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~ 315 (533)
T KOG2032|consen 236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEE 315 (533)
T ss_pred HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccH
Confidence 3444444444443334 23444444455667778999999999999999898888899999999999998887889
Q ss_pred HHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcH----HHHHhHH-HHHH
Q 002465 201 VKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR----FLRRQLV-DVVG 275 (919)
Q Consensus 201 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~-~li~ 275 (919)
|...++++|..+.+...+. .+..++-.+--.+.....+.+++.|..++-.+..+....+. +|...+. .+.+
T Consensus 316 V~leam~~Lt~v~~~~~~~----~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ 391 (533)
T KOG2032|consen 316 VQLEAMKCLTMVLEKASND----DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP 391 (533)
T ss_pred HHHHHHHHHHHHHHhhhhc----chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc
Confidence 9999999999888765321 11221112222344555678899999999888888765532 3332222 3444
Q ss_pred HHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhc-chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcc
Q 002465 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK-LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (919)
Q Consensus 276 ~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~-~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~ 354 (919)
+++.+- +..+.+. .|+......+. |...++ ...+++...+....
T Consensus 392 lllhl~---d~~p~va-~ACr~~~~~c~-----p~l~rke~~~~~q~~ld~~~~-------------------------- 436 (533)
T KOG2032|consen 392 LLLHLQ---DPNPYVA-RACRSELRTCY-----PNLVRKELYHLFQESLDTDMA-------------------------- 436 (533)
T ss_pred ceeeeC---CCChHHH-HHHHHHHHhcC-----chhHHHHHHHHHhhhhHHhHH--------------------------
Confidence 444432 3334333 34444444333 211111 11111111111000
Q ss_pred cchHHHHHHHHHHHcCCCcchHHHHHHHHH---hhCCCCH-HHHHHHHHHHHHHHHhcHHHHHHh--HHHHHHHHHhhCC
Q 002465 355 YSVGQECLDRLAIALGGNTIVPVASEQLPA---YLAAPEW-QKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFR 428 (919)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~~~~~-~~r~aal~~l~~i~~~~~~~~~~~--l~~l~~~l~~~l~ 428 (919)
.........+..+. .+.|.+..++.. .+-+..| .+|.++...-+...........++ ...+...+-....
T Consensus 437 --~~q~Fyn~~c~~L~--~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~ 512 (533)
T KOG2032|consen 437 --RFQAFYNQWCIQLN--HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWR 512 (533)
T ss_pred --HHHHHHHHHHHHHh--hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHcc
Confidence 01111122222221 222333322221 2224556 888888887777776665533333 3456667777789
Q ss_pred CCCHhHHHHHHHHHHHhhh
Q 002465 429 DPHPRVRWAAINAIGQLST 447 (919)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~ 447 (919)
|+-|.|+..+..+++.++.
T Consensus 513 dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 513 DPRPEVTDSARKALDLLSV 531 (533)
T ss_pred CCCchhHHHHHHHhhhHhh
Confidence 9999999999999987753
No 113
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.03 E-value=3.6e-05 Score=85.53 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=127.7
Q ss_pred chHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchh
Q 002465 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (919)
Q Consensus 374 ~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (919)
++..+.|.+.+.+....-..|..-+.+|+.+....+. .+.+.++.++|.++++|.-+++.||-.+..++..+....+.-
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 3444566666666655666777788888888777665 556899999999999999999999999999999888776665
Q ss_pred HHhhhhhhhHHHHHhhccCCCC--hHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHH
Q 002465 453 LQNQFHPQVLPALAGAMDDFQN--PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTA 526 (919)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~d~~~--~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~a 526 (919)
. ..+.+.++|.++..-.++.+ ..||..|..+|..+.+..+...+.+|-+.++..|.+.+++++..+|+.|..+
T Consensus 944 ~-t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 Q-TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred c-hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5 78999999999988776333 6799999999999999888888999999999999999999999999998766
No 114
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.02 E-value=0.0033 Score=71.61 Aligned_cols=375 Identities=14% Similarity=0.129 Sum_probs=200.7
Q ss_pred chHhHHHHHHHHHHHHHhcccCCC--CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhh
Q 002465 116 SAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (919)
Q Consensus 116 ~~~~vr~~~~~~i~~i~~~~~~~~--~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 193 (919)
++..+| .+..++..++...-... .-..+++.|..++.+++......++.+|..++-.....-...-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344444 44456676665321100 225688889999998888888888888887764322111112235777777888
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCcchhhHH--hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc-HHHHHhH
Q 002465 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQL 270 (919)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~ 270 (919)
..+ +..++..++++|.++...-. .+..+ ..++|.++..+ . ++..+..++.+|..+..... ..+-.+
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL----~--d~~~~~val~iLy~LS~dd~~r~~f~~- 409 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELL----K--DPNFREVALKILYNLSMDDEARSMFAY- 409 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHh----C--CCchHHHHHHHHHHhccCHhhHHHHhh-
Confidence 876 88899999999998874321 22222 24566666555 3 34455667777776654321 111111
Q ss_pred HHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 002465 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (919)
Q Consensus 271 ~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~ 350 (919)
.+.++.+++.+.. ..++.+...++.++..++..++....+++ . ..++.++.......
T Consensus 410 TdcIp~L~~~Ll~-~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g----~gL~~L~~ra~~~~---------------- 466 (708)
T PF05804_consen 410 TDCIPQLMQMLLE-NSEEEVQLELIALLINLALNKRNAQLMCE--G----NGLQSLMKRALKTR---------------- 466 (708)
T ss_pred cchHHHHHHHHHh-CCCccccHHHHHHHHHHhcCHHHHHHHHh--c----CcHHHHHHHHHhcc----------------
Confidence 1234444443322 12344455556666677664322221211 1 12333333221111
Q ss_pred CCcccchHHHHHHHHHHHcCCC--cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc-HH-HHHHhHH--HHHHHHH
Q 002465 351 ESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AK-VMVKNLE--QVLSMVL 424 (919)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~-~~-~~~~~l~--~l~~~l~ 424 (919)
.....+.+..++.+-|+. .+.+.+.+++....+..++ ...+.++|.+++-. ++ .....+. .++|.+.
T Consensus 467 ----D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 467 ----DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK 539 (708)
T ss_pred ----cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence 113445666666654321 2333333333332223333 45555666655532 11 2223333 4666666
Q ss_pred hhCCCC--CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcH
Q 002465 425 NSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYL 501 (919)
Q Consensus 425 ~~l~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l 501 (919)
..|... ++.+.-.+...+|.++..-.... .-.-..+++.++..|... .+....-..+.++..|+.+-.+....-.-
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~ 618 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE 618 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc
Confidence 666432 44566677788888875432211 112347777777777652 23456667778888887663321110011
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 002465 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (919)
Q Consensus 502 ~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~ 533 (919)
.++...|+.++.+.+..+|..+=.++..++..
T Consensus 619 ~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 619 TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34678888999999999998777777666654
No 115
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.043 Score=60.54 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHH---------hhhhhhhHH
Q 002465 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---------NQFHPQVLP 463 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~---------~~~~~~ll~ 463 (919)
.|.---..+..++...++.+...+.+-+..-+..-+..++..-+.|+..+-.+++.++.... ...+..+++
T Consensus 415 ~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ 494 (980)
T KOG2021|consen 415 VRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNEL 494 (980)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHH
Confidence 45554455555665556555555566666555556677888899999999999987754211 122334445
Q ss_pred HHHhh--ccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHhhHHHHH
Q 002465 464 ALAGA--MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQEHFQ 539 (919)
Q Consensus 464 ~l~~~--l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~--~l~~~~~~v~~~~l~al~~l~~~~~~~~~ 539 (919)
.++.. ... +++.|+---...+.++..-+..+ ..+++.++...+. .+.+.+..||.++-..+..+++..+..+.
T Consensus 495 ll~tsqv~~h-~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv 571 (980)
T KOG2021|consen 495 LLMTSQVLAH-DHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV 571 (980)
T ss_pred HHHHcccccC-CchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 54432 233 56777766666666655555433 2467766666554 35566789999999999999999999999
Q ss_pred HhHhhhhHHHHHHH
Q 002465 540 KYYDAVMPFLKAIL 553 (919)
Q Consensus 540 ~~~~~i~~~l~~~l 553 (919)
||.+.++..+..+|
T Consensus 572 pfie~iln~iqdlL 585 (980)
T KOG2021|consen 572 PFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999988
No 116
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.05 Score=60.54 Aligned_cols=289 Identities=18% Similarity=0.196 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (919)
....+++.+-.++.+. ..-|...|.+++..+-... .. .+.| .+..++..+.++....|-.|...|.+++.
T Consensus 242 ~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~-----~r---~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTN-----SR---ELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred chhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccC-----Hh---hcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4556778888888876 6677777777776655432 11 2222 56667777778888899999999999998
Q ss_pred cCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 002465 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (919)
Q Consensus 261 ~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~ 340 (919)
.+|....-.-.++=+. . .+.+..+...|+..+..-.. ..-+..++..+...+.+.+|+
T Consensus 312 ~~P~~v~~cN~elE~l----I--td~NrsIat~AITtLLKTG~------------e~sv~rLm~qI~~fv~disDe---- 369 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESL----I--TDSNRSIATLAITTLLKTGT------------ESSVDRLMKQISSFVSDISDE---- 369 (865)
T ss_pred hCCccccccchhHHhh----h--cccccchhHHHHHHHHHhcc------------hhHHHHHHHHHHHHHHhcccc----
Confidence 8775443211111111 1 13344444444443333222 123455555555555555332
Q ss_pred cCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHH
Q 002465 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (919)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l 419 (919)
..-...+++..++..++.+. ..+++++...+. +.....+.+.+.++..+++..++.-..-+..+
T Consensus 370 -------------FKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L 434 (865)
T KOG1078|consen 370 -------------FKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL 434 (865)
T ss_pred -------------ceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 23345677888888776432 234566665554 45678888888888888876654333344444
Q ss_pred HHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc
Q 002465 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (919)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (919)
+..+..+- .+..+...|+.+....+... ...|...+...+ .- .+..||.+|..++..|. .+...+
T Consensus 435 CefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv----iL-En~ivRaaAv~alaKfg--~~~~~l- 500 (865)
T KOG1078|consen 435 CEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV----IL-ENAIVRAAAVSALAKFG--AQDVVL- 500 (865)
T ss_pred HHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHhhhh----hh-hhhhhHHHHHHHHHHHh--cCCCCc-
Confidence 44443321 23344445555554433211 023444444333 22 56788999999999887 222222
Q ss_pred CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
.+.+...|..++.+.+..+|++|--++..+-.
T Consensus 501 --~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 501 --LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred --cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 34455556677888888899888777776653
No 117
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.97 E-value=0.00028 Score=67.00 Aligned_cols=111 Identities=22% Similarity=0.324 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 002465 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l 469 (919)
++.+|..++.++|-++...+. .+++.++.+..+|+|+++.||..|+.+|.++... ++ ...-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 477899999999998887764 4455667777789999999999999999998753 22 245566778888888
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHH
Q 002465 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (919)
Q Consensus 470 ~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~ 509 (919)
.| +++.||..|..++..+...-.++.+..++++++..+-
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99 9999999999999999988554545445555544443
No 118
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.065 Score=61.02 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~--~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (919)
-+..++..+.+.|.+.++--.-+|..+.+.+|+..+...=.+..+ ++|+.+|.+|.-.+..+=- ++.
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----------~el 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----------KEL 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----------HHH
Confidence 566677888888999999999999999998886543333333332 7899999999887765421 334
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch--hHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002465 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (919)
Q Consensus 101 ~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~--ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (919)
...+...+.+.+.. +.+.||+.++.++..+.+..- +..++ +...+..++.+.+|.+...|+..|..+...
T Consensus 125 ~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 44555566666664 799999999999999987532 33443 456667777889999999999999988776
No 119
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0011 Score=73.82 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=166.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHh
Q 002465 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (919)
Q Consensus 462 l~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~ 541 (919)
+...+..+.| +.+.+|..+...+..++++-.+.. .-....++...+..+++.++.+--.++..+.+++...+
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------ 800 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------ 800 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence 5666777788 778899999999999998654332 24567788888999999999999899999999988755
Q ss_pred HhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH
Q 002465 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (919)
Q Consensus 542 ~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 621 (919)
+.++|-+.+...+..+......|-+.=|++..++++.| +.+..|...+++.++.-.. +.+...|-..+..++.+|
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 55666666644433332222333444588999999999 7777888888888877443 234556778888899999
Q ss_pred HHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHH
Q 002465 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (919)
Q Consensus 622 ~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~ 701 (919)
....-....++..++..++...+.+.. .-.|.+|+.++..+...
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s------------------------------------~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS------------------------------------VLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc------------------------------------hhhHHHHHHHHHHHHhc
Confidence 887766666888888888877754211 12367899999999999
Q ss_pred hcccccccH----HHHHHHHccccCCcCChHHHHHHHHhHHHHHHHH
Q 002465 702 LKEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 702 ~~~~~~p~~----~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (919)
+|..+.|.. -+....+...+.....+++|.-|..++-.+-...
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 998888844 3344444444444445677777777766655443
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=8.9e-05 Score=61.29 Aligned_cols=86 Identities=28% Similarity=0.403 Sum_probs=67.3
Q ss_pred HHHHHhh-CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhh
Q 002465 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (919)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (919)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...++|+++.||..|+++||++. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence 3445555 7999999999999998432 2366888888889999999999999999873 2
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHH
Q 002465 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (919)
Q Consensus 459 ~~ll~~l~~~l~d~~~~~v~~~a~~al~ 486 (919)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4577888888877456678999998874
No 121
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.89 E-value=0.00029 Score=65.51 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=115.7
Q ss_pred HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
..+..++..+...++++++.-|+.++..++..++..+.+....+....+..+++.++....+.+++.++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45667777888889999999999999999999999876665677788888899988885567789999999999987543
Q ss_pred ------CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHH
Q 002465 494 ------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 494 ------~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (919)
.+...|.++.+++.+++++++ ....+.++.++..+....+..|.||..++-..+.+.+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 245679999999999999886 5677889999999999999999999988887777654
No 122
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.89 E-value=0.00042 Score=71.69 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=129.3
Q ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHH-HHHhhhhhchhH
Q 002465 376 PVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA-IGQLSTDLGPDL 453 (919)
Q Consensus 376 ~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~-L~~l~~~~~~~~ 453 (919)
..++-.+.+.+.+ .+...|.-|+..|+.+...-+..+..+..-.+..++..-.|.++.|-..|..+ +-.++.+.+
T Consensus 328 ~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P--- 404 (516)
T KOG2956|consen 328 AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP--- 404 (516)
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc---
Confidence 3444445555665 78889999999999999998887777777778888888888887766655554 444444444
Q ss_pred HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 002465 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (919)
Q Consensus 454 ~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~ 533 (919)
...+..+.|.++. .| ...-..+...+..+++.+..+.+.+.++.+.|.+++..++....||..++-|+-.+...
T Consensus 405 -~~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 405 -LQCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred -hhHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 2345555666655 22 34445677789999999988888899999999999999999999999999999999999
Q ss_pred hH-HHHHHhHhhhhHHHHHHH
Q 002465 534 SQ-EHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 534 ~~-~~~~~~~~~i~~~l~~~l 553 (919)
.| +.|.||+.++-..-.+++
T Consensus 479 vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 479 VGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred HhHHhhhhHhhhccHHHHHHH
Confidence 99 889999987765544443
No 123
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.85 E-value=0.17 Score=65.23 Aligned_cols=335 Identities=15% Similarity=0.263 Sum_probs=185.5
Q ss_pred HHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHH
Q 002465 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 402 ~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a 481 (919)
..+..+....+.++..+++..+++.+.++.+++-.++..+++.++...+.++ ..+.+..++.+.+.+.+..+..-|..+
T Consensus 632 ~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~~~~~~~~~~~~~l~~~s~~~rr~as 710 (2341)
T KOG0891|consen 632 CELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VKWVDELFSLIIKMLQDQSSLGKRLAA 710 (2341)
T ss_pred hHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hhccchHHHHHHHHHHHhhhhhchhHH
Confidence 3334444445667888888888888999999999999999999999888666 667788888888888874556667888
Q ss_pred HHHHHHHHhcCCCccccCc--HHHHHHHHHHHhhcCC-hhHHHHHHHHHHH-----------------------------
Q 002465 482 ASAVLNFSENCTPEILTPY--LDGIVSKLLVLLQNGK-QMVQEGALTALAS----------------------------- 529 (919)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~--l~~i~~~L~~~l~~~~-~~v~~~~l~al~~----------------------------- 529 (919)
.+++.++.+.-+- .+.|| .|.++..+...+.... ..+|..++..++.
T Consensus 711 lk~l~~l~s~~~~-~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~ 789 (2341)
T KOG0891|consen 711 LKALGQLESSTGY-VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDI 789 (2341)
T ss_pred HHHhhhhhcccce-EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccc
Confidence 8888888876542 23344 2333433333322110 1111111111110
Q ss_pred ------------------------HH-----------------------HhhHHHHHHhHhhhhHHHHHHHhhcCCcccc
Q 002465 530 ------------------------VA-----------------------DSSQEHFQKYYDAVMPFLKAILVNATDKSNR 562 (919)
Q Consensus 530 ------------------------l~-----------------------~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 562 (919)
+. ...+.....|.++++|.+......... ...
T Consensus 790 ~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~-~~~ 868 (2341)
T KOG0891|consen 790 DISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPP-NLR 868 (2341)
T ss_pred hHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCc-chh
Confidence 00 001111122333333333322221100 000
Q ss_pred hhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHh
Q 002465 563 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (919)
Q Consensus 563 ~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~ 642 (919)
.. ...-++. ..+..+....++.+.+...+...+. .+..+...+......+...++..|..|+|..++..+..
T Consensus 869 ~f---~~~q~~~-~~~~~~~h~~~~~~~i~~~i~~~~~----~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~ 940 (2341)
T KOG0891|consen 869 EF---YFQQLTS-LVAIVRQHIRPYMESIFTLIKDFWP----PDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTV 940 (2341)
T ss_pred HH---HHHhhhh-hhhccchhHhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchhee
Confidence 00 0000000 0111223344444444444433221 12224445566777888889999999999999887776
Q ss_pred cccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccC
Q 002465 643 AQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLK 722 (919)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~ 722 (919)
...+. +.+.. ... .+..-....|....-|.+-+.+.+++++.
T Consensus 941 ~~~~~-----------------s~~~~--------------------~~~-~~~~~~~~~~~~~~~~~hl~~~~~vkl~~ 982 (2341)
T KOG0891|consen 941 LQHDK-----------------SKDRV--------------------VSR-KVLQSLQKFGSNLEQYLHLLLPPIVKLFE 982 (2341)
T ss_pred ecccc-----------------cchHH--------------------HHH-HhhHHHHhcCccHHhhHhhhccHHHHHHh
Confidence 63211 00000 000 11111223344455566666677777776
Q ss_pred Cc-CChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC
Q 002465 723 FY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (919)
Q Consensus 723 ~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~ 801 (919)
+. ....+|..+..+++.+..... .......+...+++.+... ++........+..++...|.
T Consensus 983 ~~~~~~~~~~~~l~t~~~l~~~~~---------------~~~~~s~i~~~~~r~l~~s--~el~~~~~~~l~~l~~~~~~ 1045 (2341)
T KOG0891|consen 983 DPTVPLSIRKSALITIGRLAQQVD---------------LSEYASRIIHPLVRVLSSS--PELRDVIMDTLIALVKQLGK 1045 (2341)
T ss_pred hhhhhHHHHhhHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHhhcC
Confidence 54 245788888888888877653 2233334444556777555 78888999999999999887
Q ss_pred C
Q 002465 802 L 802 (919)
Q Consensus 802 ~ 802 (919)
.
T Consensus 1046 ~ 1046 (2341)
T KOG0891|consen 1046 D 1046 (2341)
T ss_pred c
Confidence 4
No 124
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.039 Score=54.56 Aligned_cols=350 Identities=16% Similarity=0.164 Sum_probs=181.1
Q ss_pred hhHHHH---HHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHH
Q 002465 157 VKLQES---AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (919)
Q Consensus 157 ~~~r~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il 233 (919)
.++|+. ...+|..+.+.... ....+++.|.+..+|..+ +..|+.-+++.++.+++..+.+...+.....-..++
T Consensus 54 enhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeil 130 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEIL 130 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHH
Confidence 355555 55556555543211 124578899999999997 889999999999999987642211111111123566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHH-HHHHH-HHhhcCCCcChhHHHHHHHHHHHHHhhhcccchh
Q 002465 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-VVGSM-LQIAEAESLEEGTRHLAIEFVITLAEARERAPGM 311 (919)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-li~~l-l~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~ 311 (919)
+.+..++...+.++.+.+.+.+..++. .+..+.-.+.. +..-+ +.-+.. .-++-+|...++.+..+.+. .|..
T Consensus 131 klildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaa-kcndiaRvRVleLIieifSi---Spes 205 (524)
T KOG4413|consen 131 KLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAA-KCNDIARVRVLELIIEIFSI---SPES 205 (524)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHh-hhhhHHHHHHHHHHHHHHhc---CHHH
Confidence 677777888899999999999988764 23222221110 00000 000000 11234566667777777663 3321
Q ss_pred hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHH--HHHHHHHhhC--
Q 002465 312 MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV--ASEQLPAYLA-- 387 (919)
Q Consensus 312 ~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--l~~~l~~~l~-- 387 (919)
.... --..++..+..-|...+|. -...-..+....++..-.+.++++. +++.+...+.
T Consensus 206 anec--kkSGLldlLeaElkGteDt----------------LVianciElvteLaeteHgreflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 206 ANEC--KKSGLLDLLEAELKGTEDT----------------LVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred HhHh--hhhhHHHHHHHHhcCCcce----------------eehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCC
Confidence 1110 1123555554444332211 0111223333344433222344432 5555555554
Q ss_pred CCCHHHHHHHHHHHHHHHH------hcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch-hHHhhhhhh
Q 002465 388 APEWQKHHAALIALAQIAE------GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQ 460 (919)
Q Consensus 388 ~~~~~~r~aal~~l~~i~~------~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~ 460 (919)
+.++..+.-++..++.+.. ...+.+-+-+...+...++.+...+|....+|..++|.+...... ++....-+.
T Consensus 268 dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgpp 347 (524)
T KOG4413|consen 268 DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPP 347 (524)
T ss_pred CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCCh
Confidence 4556666666666655432 233333344555566666677777888999999999999876532 221122222
Q ss_pred hHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC--CccccC--cHHHH----------------HHHHHHHhhcCChhHH
Q 002465 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP--YLDGI----------------VSKLLVLLQNGKQMVQ 520 (919)
Q Consensus 461 ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~--~~~l~~--~l~~i----------------~~~L~~~l~~~~~~v~ 520 (919)
-...++....|-+...-+..+..+|..+..... ++.+.. -...+ +...+..++.+.++++
T Consensus 348 aaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEih 427 (524)
T KOG4413|consen 348 AAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIH 427 (524)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhH
Confidence 223333222220122234555666666554321 111100 00001 1223345566678888
Q ss_pred HHHHHHHHHHHH
Q 002465 521 EGALTALASVAD 532 (919)
Q Consensus 521 ~~~l~al~~l~~ 532 (919)
..++..+..++.
T Consensus 428 cAalktfTAiaa 439 (524)
T KOG4413|consen 428 CAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHHHc
Confidence 888888888764
No 125
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.83 E-value=0.00084 Score=63.75 Aligned_cols=135 Identities=15% Similarity=0.244 Sum_probs=97.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHH
Q 002465 156 SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (919)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~ 235 (919)
++.+|..++.+++.++...+.. ++..++.+...|+|+ ++.||..|+.++..++..- .-.+. +.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d-----~ik~k---~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILED-----MIKVK---GQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcC-----ceeeh---hhhhHH
Confidence 4678999999999999887654 566777888899998 9999999999999998641 11111 233334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHcc-CcHHHHHhHHHHHHHHHHhhcCC---CcChhHHHHHHHHHHHHHh
Q 002465 236 LTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 236 l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~li~~ll~~~~~~---~~~~~vr~~al~~l~~l~~ 303 (919)
+..++.+++++++..|..+|.++... .+..+..++.+++..+-...+.+ ..+.+-|...+.++.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 44456789999999999999999987 67777777777666544332221 2345567777777776665
No 126
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.11 Score=59.38 Aligned_cols=156 Identities=12% Similarity=0.182 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHH
Q 002465 123 KLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVK 202 (919)
Q Consensus 123 ~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr 202 (919)
++-.+|+.+... ...+.++|.++....+.|.+.+...-.-+...++.-|+. .--.++.+.+-++++ ++.+|
T Consensus 39 AmK~iIa~M~~G----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~----~lLavNti~kDl~d~-N~~iR 109 (757)
T COG5096 39 AMKKIIAQMSLG----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL----ALLAVNTIQKDLQDP-NEEIR 109 (757)
T ss_pred HHHHHHHHHhcC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhccCC-CHHHH
Confidence 333455555432 358899999999888888888877777777777665543 334567788888998 99999
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHh-HHHHHHHHHHhh
Q 002465 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ-LVDVVGSMLQIA 281 (919)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~li~~ll~~~ 281 (919)
-.|++.++.+=. ..+++.++..+.++++++++.+|+.|.-++.++-+..+..+... ...+...++
T Consensus 110 ~~AlR~ls~l~~-----------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~--- 175 (757)
T COG5096 110 GFALRTLSLLRV-----------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV--- 175 (757)
T ss_pred HHHHHHHHhcCh-----------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh---
Confidence 999998875432 35667888888999999999999999999999987766554433 223333222
Q ss_pred cCCCcChhHHHHHHHHHHHHHh
Q 002465 282 EAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 282 ~~~~~~~~vr~~al~~l~~l~~ 303 (919)
.+.++.+...|+-.+..+..
T Consensus 176 --~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 176 --ADSDPIVIANALASLAEIDP 195 (757)
T ss_pred --hCCCchHHHHHHHHHHHhch
Confidence 25678888888887777766
No 127
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.077 Score=58.61 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=110.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
-+++.+++.+.++-.|++++..++..-.+.+. ...+..+++. .+|.|..||++|..+||-++-.-
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-------- 586 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-------- 586 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------
Confidence 45667888899999999998887654433322 2334444443 68999999999999999866332
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~ 537 (919)
+..+|..++.|.+.-|+.||..++.+|.-.|.+-+.. .-+..|-.+..++...||..|+-+++-+.....+.
T Consensus 587 -p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 587 -PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred -hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 2344556666666568999999999999998876632 23344445556788899999999999887666666
Q ss_pred HHHhHhhhhHHHHHHHhh
Q 002465 538 FQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 538 ~~~~~~~i~~~l~~~l~~ 555 (919)
..|-+..+...+.+++.+
T Consensus 659 ~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVIND 676 (929)
T ss_pred cCchHHHHHHHHHHHhhh
Confidence 666677777777777654
No 128
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.69 E-value=0.003 Score=62.99 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=122.4
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHH--HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH-Hh
Q 002465 380 EQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QN 455 (919)
Q Consensus 380 ~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~ 455 (919)
+.+..+++ +.++..++.++.+++..+..... ...+. ..++.+...+.++++.+|..|++++.+++....... ..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 34444555 56899999999999987654322 12222 357888889999999999999999999987654321 13
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
.|...+...+... +-+..++.++..+|.++.-.-. ....+...++.++.++..++..+|..++.++..++....
T Consensus 93 ~~i~~Vc~~~~s~---~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 93 MYIPQVCEETVSS---PLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 4555555555442 1357889899999988853221 223345556777888999999999999999999876543
Q ss_pred HHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhCh
Q 002465 536 EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (919)
Q Consensus 536 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~ 581 (919)
..-.=.-.+.++.+..++.... ...+.-+++..+..|...+++
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHhhCc
Confidence 2111122456666777764432 223333445555555554443
No 129
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.69 E-value=0.00073 Score=62.15 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=94.0
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHhh
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 534 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l---~~~~ 534 (919)
++..+|.+++.+.+ ....-+--|...+..+++..+.+.+.|.++.++..|...+++.++.+...++.++..+ ....
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 56889999999998 6666777788888888888444567899999999999999999999999999999999 6678
Q ss_pred HHHHHHhHhhhhHHHHHHHhhcCC-------cccchhhhHHHHHHHHHHhhhChh
Q 002465 535 QEHFQKYYDAVMPFLKAILVNATD-------KSNRMLRAKSMECISLVGMAVGKD 582 (919)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~l~~~~~-------~~~~~lr~~ai~~l~~l~~~~~~~ 582 (919)
|+.+.||+.+++|.+--...+..+ .....++...-+++..+-+.-|++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 899999999999988755433211 111234444455565555555544
No 130
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.69 E-value=0.37 Score=61.31 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCC-HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchh
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~-~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~--~~~w~~l 144 (919)
+.+..++.+|.-.||++--+.- .+..++ -..+..+..-+...+.+..+..+|..+.+++..+...... ...|..+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfl--e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFL--EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhc--chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 4567788888888888655420 011111 1123333344445555556778999999999887764322 2589999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc----ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCc-
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~- 219 (919)
+..+.....+.++.....|+..+..|+...-..+. ..+..++..+.++.+...+.++-..|+..|..+..++.+.
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999988888888889999999988876433222 2455666666666654434667677777777654443100
Q ss_pred ------------------------c------hhhH-HhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHH
Q 002465 220 ------------------------A------DRDR-FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (919)
Q Consensus 220 ------------------------~------~~~~-~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~ 267 (919)
. ..+. ..-++| ++..+...+.++++++|..|+..|-++...++..|.
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 0001 122333 344454556688999999999999888877755443
No 131
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.68 E-value=0.0011 Score=61.69 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=111.5
Q ss_pred CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh-hhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
.+..+...+.++++++++..|-.|+.+++.+++.. .+.+..+....+..+++.++.++...++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44566777788888999999999999999999997 45566788889999999998886778899999999999987653
Q ss_pred c--chhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHh
Q 002465 219 S--ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (919)
Q Consensus 219 ~--~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~ 280 (919)
. ..++...+.+|.+++.+...+++ ......++.+|..++..+|..++|+...+-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 2 23444567788888888877764 566788999999999999999999988776665544
No 132
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00087 Score=65.75 Aligned_cols=148 Identities=18% Similarity=0.267 Sum_probs=119.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhh
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 458 (919)
+......+.+.+|....-++..+..+++.-++.+.+.+..++-.+++.++++...|-.+||.+++.+...+...+. ..+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3334456789999999999999999999988888899999999999999999999999999999999999988773 466
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 459 ~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
+.++..|+..-.. .+.-||+.|-.+|..++.+..+. .+++.|...+++.++.++..+..++.......|
T Consensus 169 d~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 169 DDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 6666666655444 57889999999999999887643 345666667788888888888777776665554
No 133
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.67 E-value=0.1 Score=58.12 Aligned_cols=314 Identities=13% Similarity=0.187 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCC
Q 002465 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (919)
Q Consensus 120 vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (919)
-|-.++.-+...... ++-..-+++-.....++... ..+.|..++..+..+++.-.......-..++..+...-.+ ++
T Consensus 6 ~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-DD 83 (464)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-hh
Confidence 344444444444332 22233334444444444443 3478999999999999875432222222333333222111 24
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHH-------Hh-------------cCChHHHHHHHHHHHHH
Q 002465 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES-------LN-------------NGNEATAQEALELLIEL 258 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~-------l~-------------~~~~~~~~~a~~~l~~l 258 (919)
-..|..|+.+|..=-..+.. . ......++-.++..+.+. .+ +.+.......+..+..+
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~-~-~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDF-F-EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred HHHHHHHHHHHHcCCcCchh-c-ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 45666666666532222210 0 011112222222222210 00 01333455677777888
Q ss_pred HccCcHHHH-HhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 002465 259 AGTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (919)
Q Consensus 259 ~~~~~~~~~-~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~ 337 (919)
+......+. +.+..++..++.+........++ ..++.++.+++.+.. .| ..-+..++..|.......
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~~-iP------~~sl~~~i~vLCsi~~~~---- 229 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYGD-IP------SESLSPCIEVLCSIVNSV---- 229 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcCc-CC------hHHHHHHHHHHhhHhccc----
Confidence 876655554 55667777777775544444444 677899999888411 11 124445555554432211
Q ss_pred ccccCCCCCccccCCcccchHHHHHHHHHHH-cCCCcchHHHHHHH--HHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHH
Q 002465 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIA-LGGNTIVPVASEQL--PAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (919)
Q Consensus 338 ~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~l~~~l--~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~ 414 (919)
+....+-+++..+... .| ...+..+..++ ...-+..+.+.-.+|+..++.+.-+.++.-.+
T Consensus 230 ---------------~l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~ 293 (464)
T PF11864_consen 230 ---------------SLCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP 293 (464)
T ss_pred ---------------ccchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc
Confidence 1122233455555432 22 33333333333 11112345777779999998887766331111
Q ss_pred h--H--HHHHHHHHhhCCCCCHhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHH
Q 002465 415 N--L--EQVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPAL 465 (919)
Q Consensus 415 ~--l--~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~~~~~ll~~l 465 (919)
. + ..+++.+...++..+++|-...+.++..+. ..++..+.....+.++..+
T Consensus 294 ~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~ 349 (464)
T PF11864_consen 294 SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDII 349 (464)
T ss_pred eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHH
Confidence 1 2 248888888898888888888887777777 4444433233334443333
No 134
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.14 Score=55.83 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=113.3
Q ss_pred hHHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 21 ~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
..+++.+...+. +.|+..|.+||..|.++.. +|+ +++..--++..+..|....+|+..|.+.+..+ ..++.+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 456777777764 5699999999999999998 776 66777777777888999999999999999875 468999
Q ss_pred HHHHHHHHHHHHHhhc-c--hHhHHHHHHHHHHHHHhcccCCC-----CcchhHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002465 100 TQSSLKSMLLQSIQLE-S--AKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e-~--~~~vr~~~~~~i~~i~~~~~~~~-----~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (919)
.+-.|++.+++-+... | .+.+-.++++.++.+.+..|-.. .+.+.+..+.+.++.++.++...++.+|..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999862 1 35577888899988887654322 34566666777777666666667777777776
Q ss_pred hhh
Q 002465 172 QYI 174 (919)
Q Consensus 172 ~~~ 174 (919)
..+
T Consensus 157 qem 159 (1082)
T KOG1410|consen 157 QEM 159 (1082)
T ss_pred HHh
Confidence 543
No 135
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.66 E-value=0.03 Score=59.53 Aligned_cols=131 Identities=23% Similarity=0.227 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh---CCCCCHhHHHHHHHHHHHhhhhhch------------hHHh
Q 002465 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP------------DLQN 455 (919)
Q Consensus 391 ~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~---l~d~~~~vr~~a~~~L~~l~~~~~~------------~~~~ 455 (919)
-..|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++..... .+..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 457889999999998877665444444444444331 1245889999999999998865421 1212
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al 527 (919)
-+...++|.+. .-.+ ..|-+|..|++.+..|-..+++ +.+..+++.+.+.+.+++..|+..|..|+
T Consensus 305 Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 24556667776 2223 5678999999999999888764 46888999999999999988888776553
No 136
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0081 Score=67.13 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=144.5
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHH
Q 002465 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (919)
Q Consensus 288 ~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (919)
..+|..++..+..+.+.++.. ...+-..++...+.++.+.+ .-.+-.+...+..++.
T Consensus 741 vpik~~gL~~l~~l~e~r~~~------~~~~~ekvl~i~ld~Lkded-----------------syvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKA------TLIQGEKVLAIALDTLKDED-----------------SYVYLNAIRGVVSLCE 797 (982)
T ss_pred ccchHHHHHHHHHHHHhcchh------hhhhHHHHHHHHHHHhcccC-----------------ceeeHHHHHHHHHHHH
Confidence 446777777777777742111 11244567777776664321 1134446667778888
Q ss_pred HcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhh
Q 002465 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (919)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~ 447 (919)
.++ +.++|.+.....+.-+......|.-.-.+++.++...++....|...++...+.+++||+.+.|.+++..+|+++.
T Consensus 798 vy~-e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 798 VYP-EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred hcc-hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 876 7777777665444333332344444448888899888888889999999999999999999999999999999998
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcH----HHHHHHHHHHhhc-CChhHHHH
Q 002465 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL----DGIVSKLLVLLQN-GKQMVQEG 522 (919)
Q Consensus 448 ~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l----~~i~~~L~~~l~~-~~~~v~~~ 522 (919)
...-.. ..++.+++..++........+.+|.+|...+..+..+.+.. +.|++ -.....+.+.... .+..+|-.
T Consensus 877 ~~a~~v-sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLpilr~~l~Dl~~tl~~~vr~~~dd~~klh 954 (982)
T KOG4653|consen 877 LLAFQV-SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-LLPILRLLLIDLDETLLSYVRQHDDDGLKLH 954 (982)
T ss_pred HHhhhh-hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 776555 45777777777776655477899999999999999998843 44644 2333444443332 23344444
Q ss_pred HHHHHHHH
Q 002465 523 ALTALASV 530 (919)
Q Consensus 523 ~l~al~~l 530 (919)
+..++-.+
T Consensus 955 aql~leei 962 (982)
T KOG4653|consen 955 AQLCLEEI 962 (982)
T ss_pred HHHHHHHH
Confidence 44444433
No 137
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.64 E-value=0.092 Score=66.47 Aligned_cols=309 Identities=15% Similarity=0.175 Sum_probs=186.2
Q ss_pred cchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh--hcc--ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 002465 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (919)
Q Consensus 141 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (919)
|.-+-+++.....+.+..++..|+..|.+++..+-+ ++. .+...++..|...+.+..+.++|...++|+.+++...
T Consensus 1135 W~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~ 1214 (1780)
T PLN03076 1135 WHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 1214 (1780)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 334555555554555667777888888787765422 221 1335677777777766558899999999999998763
Q ss_pred cCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHH----HhHHHHHHHHHHhhcCCCcChhHHH
Q 002465 217 TSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLEEGTRH 292 (919)
Q Consensus 217 ~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~li~~ll~~~~~~~~~~~vr~ 292 (919)
. ..++.=...++.++.....+..+.....+++.+..+++.+-..+. ..+..++..+.....+. .+.++-.
T Consensus 1215 ~-----~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nISL 1288 (1780)
T PLN03076 1215 V-----NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDISL 1288 (1780)
T ss_pred H-----hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-CcccccH
Confidence 2 333444557778887777778888889999999887764433222 45567777776666543 3466777
Q ss_pred HHHHHHHHHHhhhcccchh---------------------------hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 002465 293 LAIEFVITLAEARERAPGM---------------------------MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (919)
Q Consensus 293 ~al~~l~~l~~~~~~~~~~---------------------------~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~ 345 (919)
.|++++..++..--..+.. ......+..-.+|.+...- +...+
T Consensus 1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls-~l~~D--------- 1358 (1780)
T PLN03076 1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS-ELSFD--------- 1358 (1780)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH-HHhcC---------
Confidence 7887776554421000000 0000011122333333221 11100
Q ss_pred CccccCCcccchHHHHHHHHHHHcCCCcchH---------HHHHHHHHhh---C--------------------CCCHHH
Q 002465 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVP---------VASEQLPAYL---A--------------------APEWQK 393 (919)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~---------~l~~~l~~~l---~--------------------~~~~~~ 393 (919)
+....++.|.+.|-.+....| ..+-+ .++|++...- . ...|.
T Consensus 1359 ----~RlEVR~~ALqtLF~iL~~yG-~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl- 1432 (1780)
T PLN03076 1359 ----PRPEIRKSALQVLFDTLRNHG-HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL- 1432 (1780)
T ss_pred ----CcHHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-
Confidence 012356667776655555555 22222 3445443321 0 01243
Q ss_pred HHHHHHHHHHHHHhcHH---HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc
Q 002465 394 HHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (919)
Q Consensus 394 r~aal~~l~~i~~~~~~---~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 470 (919)
..+...+|..+++-... .+...++.++..+..++..+|..+-.....||.++....+..+.+..+..++..+.+.+.
T Consensus 1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 55666666666655444 344567777888888888889999999999999999988887767778888887777766
Q ss_pred C
Q 002465 471 D 471 (919)
Q Consensus 471 d 471 (919)
.
T Consensus 1513 ~ 1513 (1780)
T PLN03076 1513 A 1513 (1780)
T ss_pred H
Confidence 5
No 138
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.34 Score=59.69 Aligned_cols=223 Identities=21% Similarity=0.219 Sum_probs=135.8
Q ss_pred cChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCccc---chHHHHH
Q 002465 286 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY---SVGQECL 362 (919)
Q Consensus 286 ~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~---~~a~~~l 362 (919)
.++..|-.+-++|..++... .-++|+..+.+.++..+....|. -.+ ..+.-++
T Consensus 888 ~~p~~rc~~~ea~arLaq~v--------~~~~f~a~~aq~~fdklas~~d~----------------i~R~ghslalg~l 943 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVV--------GSAPFVASLAQNSFDKLASARDP----------------ITRTGHSLALGCL 943 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHhcCCc----------------HHHHHHHHHHHHH
Confidence 45777888888888888842 12457778888888777654221 111 1233333
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC-CCC--CHhHHHHH
Q 002465 363 DRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDP--HPRVRWAA 438 (919)
Q Consensus 363 ~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-~d~--~~~vr~~a 438 (919)
.+-...+++.+.+..-+..+..+.+|. .+.++..++.++..+.+..+..+..+....+..+...+ .++ +..|+..-
T Consensus 944 hkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~ 1023 (2067)
T KOG1822|consen 944 HKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCY 1023 (2067)
T ss_pred HHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhh
Confidence 333333344455555445555555655 56999999999999998776655556555555444443 444 44455544
Q ss_pred HHHHH------HhhhhhchhHHhhhh--------hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHH
Q 002465 439 INAIG------QLSTDLGPDLQNQFH--------PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (919)
Q Consensus 439 ~~~L~------~l~~~~~~~~~~~~~--------~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (919)
-.++. .+....+++++.+.. ...+-.. ..+.+++++.++.++..++..+--..+. .-.++.+
T Consensus 1024 ~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~-allls~~d~lnqa~ai~clqqlhlFapr---~~n~~~l 1099 (2067)
T KOG1822|consen 1024 NRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAAC-ALLLSHSDPLNQAAAIKCLQQLHLFAPR---HVNLDSL 1099 (2067)
T ss_pred ccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHH-HHhcCCCccchHHHHHHHHHHHHhhcch---hccHHHH
Confidence 44544 666666666542221 1122222 2233325788899999998887654442 2468888
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 505 ~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
+..|..++.+...-.|...+.++-.++.....
T Consensus 1100 V~~L~~~l~s~~~i~r~~~~~clrql~~Re~s 1131 (2067)
T KOG1822|consen 1100 VLQLCSLLSSSYLILRRASFSCLRQLVQREAS 1131 (2067)
T ss_pred HHHHHHHhcchhhhhhhhHHhhhhHHhHHHHH
Confidence 99999988888777777777777777655443
No 139
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.012 Score=66.97 Aligned_cols=297 Identities=15% Similarity=0.147 Sum_probs=157.3
Q ss_pred HHHHHHHHHhhhhhhhhccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHH
Q 002465 161 ESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (919)
Q Consensus 161 ~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~ 239 (919)
...+..++.++...++.|.+.+ ..+.|++.+. .++ +..++..|..|+..++..................+++.+...
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~-a~~-s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~ 643 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKL-ASP-SEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALR 643 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHh-cCc-hHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHH
Confidence 3456777888888887776543 4455555544 454 788889999999988877643333444556666777766655
Q ss_pred HhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh-h-------------
Q 002465 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA-R------------- 305 (919)
Q Consensus 240 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~-~------------- 305 (919)
++...-. ..+-..+.-++.+......+++.++++.++..+++-+.-. ...-+..+..+... +
T Consensus 644 L~~~~~s--~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~--~~~~~~ll~s~ik~~~~~~~~~~il~~~~ 719 (1014)
T KOG4524|consen 644 LNTSGMS--PRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYS--CLQFFQLLHSIIKEMKKKYINDEILGHIA 719 (1014)
T ss_pred hccCCCC--chhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 5421111 1122233333333333344555555555555443322111 00000001111100 0
Q ss_pred -----------cccchhhhcchh----hHHHHHHHHHHhhcC-C--CCCcccccCCCCCccccCCcccchHHHHHHHHHH
Q 002465 306 -----------ERAPGMMRKLPQ----FINRLFAILMSMLLD-I--EDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (919)
Q Consensus 306 -----------~~~~~~~~~~~~----~~~~li~~l~~~l~~-~--~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (919)
...|.......+ +...+.+.....+.. . +.+++-...+.+.+++++.+.+.-. +
T Consensus 720 d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~--------e 791 (1014)
T KOG4524|consen 720 DQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDT--------E 791 (1014)
T ss_pred HHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCC--------C
Confidence 001111111111 112222222222211 0 0111000000011111122222100 0
Q ss_pred HcCCC--cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc---HHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 002465 368 ALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC---AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (919)
Q Consensus 368 ~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~---~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L 442 (919)
...++ .+.-.++.....++++++-..|-.++..+.....-. .+.+.+...+..|.++..+.+.+|.+...|+.|+
T Consensus 792 p~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 792 PILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Confidence 00000 122234445556788999999999998887644433 2345566677788899999999999999999999
Q ss_pred HHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 002465 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (919)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~d 471 (919)
.+++...++-++..+..+++|.+-..+.+
T Consensus 872 ~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 872 EQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999877776
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.18 Score=56.27 Aligned_cols=120 Identities=12% Similarity=0.129 Sum_probs=83.2
Q ss_pred chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccc---cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 142 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
++.+..+++.+...|-.+|..++.++..+...-|.++.. ..|.-+..++..|.|. ...+|..++-.|..++..-+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCch
Confidence 677888888888888899999999999998876655433 3456667778888887 788999999999988876432
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (919)
....-.|...+..+++++.+--..+..-+...|+..+..+....
T Consensus 200 IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 200 IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 22223344444455555543111222346778888888888655
No 141
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.62 E-value=0.00066 Score=63.17 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHh-cHHHHHHhHHHHHHHH------------HhhCCCCCHhHHHHHHHHHHHhhhhhchhHH----
Q 002465 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSMV------------LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 454 (919)
Q Consensus 392 ~~r~aal~~l~~i~~~-~~~~~~~~l~~l~~~l------------~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~---- 454 (919)
++|.+|+.+++.++.. .+..+..|...++|.- ...+.|++++||.+|+.++..+.+...+.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4688888888888887 4444455555554432 2246899999999999999988876543221
Q ss_pred ---------------hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc-CcHHHHHHHHHHHhhcCChh
Q 002465 455 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 518 (919)
Q Consensus 455 ---------------~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~i~~~L~~~l~~~~~~ 518 (919)
...+.++=..++..++.+.+..+....++++..++.+.+-..+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 01123333455566666567788889999999999988755554 46788888888999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 002465 519 VQEGALTALASVADSS 534 (919)
Q Consensus 519 v~~~~l~al~~l~~~~ 534 (919)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987654
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.61 E-value=0.023 Score=57.24 Aligned_cols=244 Identities=15% Similarity=0.202 Sum_probs=137.4
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH
Q 002465 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (919)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 268 (919)
+...|.++ +..+|..|+.+|+.++..++...-. ..-+..+++.+...+. +......++..+..++... .+-..
T Consensus 4 Lg~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~L~---~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSE-DPIIRAKALELLSEVLERLPPDFLS---RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-NFSPE 76 (262)
T ss_pred hhhhhCCC-CHHHHHHHHHHHHHHHHhCCHhhcc---HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-CCChh
Confidence 45677887 9999999999999999988632111 1223355555555553 5556666688888777432 22233
Q ss_pred hHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 002465 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (919)
Q Consensus 269 ~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed 348 (919)
....++..+.+-...+......|..+++++..+.+.. .... ..+-...+..+++.+ +.
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l---~~~~~~fv~~~i~~~-~g--------------- 134 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REAL---QSMGDDFVYGFIQLI-DG--------------- 134 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHH---HhchhHHHHHHHHHh-cc---------------
Confidence 3455666555544444556778999999999998852 1111 111122333333322 11
Q ss_pred ccCCcccc--hHHHHHHHHHHHcCCCcchHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHH
Q 002465 349 AGESSNYS--VGQECLDRLAIALGGNTIVPVASEQLPAYL--------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (919)
Q Consensus 349 ~~~~~~~~--~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~ 418 (919)
|-+++. .+.+.+..+...++...+...++..+.-+. +++.--.|+.--.+|....... ..+-+.
T Consensus 135 --EkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~----~~fa~~ 208 (262)
T PF14500_consen 135 --EKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST----PLFAPF 208 (262)
T ss_pred --CCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc----HhhHHH
Confidence 122332 233444555554443333333333332221 1221111221111121111111 134467
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~ 467 (919)
.+|.++..|.+..+.++..++.+|...+...++....+|...++..+-.
T Consensus 209 ~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 209 AFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988888776557788888777654
No 143
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.61 E-value=0.074 Score=57.06 Aligned_cols=355 Identities=12% Similarity=0.108 Sum_probs=179.9
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHH--HHHHHHHHHHHHhhcchHhHHHHHHHHHHH
Q 002465 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT--QSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (919)
Q Consensus 53 ~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~--~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~ 130 (919)
+.+.+...++.++.+..++.+.++...++..++...+ ..+..+-... ....-..++..|.. ++..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 4457889999999888889999999999998887641 1111110000 00112344555655 588899999999999
Q ss_pred HHhcccCCCCcc----hhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhh--hhhccccHHHHHHHHHHhhCCCC-ChHHH
Q 002465 131 LASNILPENGWP----ELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCLTNSN-NPDVK 202 (919)
Q Consensus 131 i~~~~~~~~~w~----~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~-~~~vr 202 (919)
++..... ..-. .+++.+...++++ +...+..|+.++..+...- ...|.. ...++.+...|+... +.+..
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9875322 2222 2444555555554 3566777888888876531 111111 113444444444431 45667
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcH------HHHHhHH-HHHH
Q 002465 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR------FLRRQLV-DVVG 275 (919)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~------~~~~~~~-~li~ 275 (919)
..++-|+--+. +-+.......-..++|.+++++... ..+.+..-++.+|..+++.... .....+. .+.+
T Consensus 205 Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 205 YQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 77766654433 2111101111135677777777653 3566777778888888764311 1111111 2222
Q ss_pred HHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCccc
Q 002465 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY 355 (919)
Q Consensus 276 ~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~ 355 (919)
.+-.+...+-.|+++.. .+..+....+. .......+..|...+..-.+ +|...-.++ ..|
T Consensus 281 ~l~~L~~rk~~DedL~e-dl~~L~e~L~~---~~k~ltsfD~Y~~El~sg~L----------~WSp~H~se------~FW 340 (429)
T cd00256 281 TLQSLEQRKYDDEDLTD-DLKFLTEELKN---SVQDLSSFDEYKSELRSGRL----------HWSPVHKSE------KFW 340 (429)
T ss_pred HHHHHhcCCCCcHHHHH-HHHHHHHHHHH---HHHHcCCHHHHHHHHhcCCc----------cCCCCCCCc------hHH
Confidence 22222222333455443 34444444332 00011112223333222111 232221100 011
Q ss_pred chHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcHH--HHHHhHHHHHHHHHhhCCCCCH
Q 002465 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHP 432 (919)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~--~~~~~l~~l~~~l~~~l~d~~~ 432 (919)
. +-...+- .+. + .++..+...+ .+.++..-..|+.-+|.++...+. .+...+. .=..+.+.+.++++
T Consensus 341 ~---EN~~kf~----~~~-~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~ 410 (429)
T cd00256 341 R---ENADRLN----EKN-Y-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDP 410 (429)
T ss_pred H---HHHHHHH----hcc-h-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCH
Confidence 1 0111111 111 1 1233333344 355666667788888988887542 2222111 23456677899999
Q ss_pred hHHHHHHHHHHHhh
Q 002465 433 RVRWAAINAIGQLS 446 (919)
Q Consensus 433 ~vr~~a~~~L~~l~ 446 (919)
.||+.|+.|+..+.
T Consensus 411 ~Vr~eAL~avQklm 424 (429)
T cd00256 411 NVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 144
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.53 E-value=0.00045 Score=57.03 Aligned_cols=86 Identities=34% Similarity=0.552 Sum_probs=67.3
Q ss_pred HHHHHhhC-CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcccc
Q 002465 420 LSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (919)
Q Consensus 420 ~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (919)
++.+++.+ +|+++.||..++++|+++. .+..+|.+...++| +++.||..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 45677777 8999999999999999542 23678888898988 99999999999998762
Q ss_pred CcHHHHHHHHHHHhhcC-ChhHHHHHHHHHH
Q 002465 499 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 528 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~~-~~~v~~~~l~al~ 528 (919)
-+..++.|.+.+.+. +..+|..+..+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245667777877765 4667988888875
No 145
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.38 Score=56.56 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=103.4
Q ss_pred cchhHHHHHHhhcCCChhH-HHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCc
Q 002465 141 WPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (919)
Q Consensus 141 w~~ll~~l~~~~~s~~~~~-r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (919)
...++..+++-+.+..+.. ..++...++.+.......+....-.-+..+...+... +-..|.+.+.++++++...-..
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d 346 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRD 346 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888877765544 3344555555544433322222233344445556665 8899999999999888764322
Q ss_pred ch-hhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHH
Q 002465 220 AD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (919)
Q Consensus 220 ~~-~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l 298 (919)
.. ......+-..+++.+.+-+.+-++-+|..++..+..+.+....... ....++...+..+. +-+.-||..|+..+
T Consensus 347 ~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~--DkSslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 347 EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLE--DKSSLVRKNAIQLL 423 (1251)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccc--cccHHHHHHHHHHH
Confidence 22 2333343445888888888888999999999999999876543332 23455555555443 34577899999999
Q ss_pred HHHHhh
Q 002465 299 ITLAEA 304 (919)
Q Consensus 299 ~~l~~~ 304 (919)
..+...
T Consensus 424 ~~~L~~ 429 (1251)
T KOG0414|consen 424 SSLLDR 429 (1251)
T ss_pred HHHHhc
Confidence 988873
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.48 E-value=0.027 Score=58.49 Aligned_cols=196 Identities=18% Similarity=0.173 Sum_probs=132.2
Q ss_pred hhCCCCCHhHHHHHHHHHHHhhh-hhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-ccccCcHH
Q 002465 425 NSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLD 502 (919)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~-~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~ 502 (919)
..+.+.+...|.+++..+.++.. ...+++.......++..+.+.++. +...-+.-|+.++.-++=.++. ..-...+.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 34567778999999988877664 334444467788899999999987 5555566677777777655441 22345677
Q ss_pred HHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHh-----hcCC------cccchhhhHHH
Q 002465 503 GIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV-----NATD------KSNRMLRAKSM 569 (919)
Q Consensus 503 ~i~~~L~~~l~~~~--~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~-----~~~~------~~~~~lr~~ai 569 (919)
.+.+.|.+.+.+.. ..+|..++.++|.++...+..... +..+|..+..+|. ...+ .+...+...|+
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~-~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEE-TEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 78888888887664 467778888999888776654322 2323333332221 1111 11345888999
Q ss_pred HHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc
Q 002465 570 ECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (919)
Q Consensus 570 ~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g 625 (919)
.+.+.+...++...+.......++.+..++.+ .+-.+|-.+..+++-+.....
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 99999999888766777778888888887653 234478888888877766554
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.44 E-value=0.45 Score=56.21 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhc---------chHhHHHHHHHHHHHHHhcccCC
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE---------SAKSISKKLCDTVSELASNILPE 138 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e---------~~~~vr~~~~~~i~~i~~~~~~~ 138 (919)
++.-++|+-|++-++..++.+ ...++-+..+.+...++..+.-+ -...||.+.+++++.+.++..+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~- 162 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE- 162 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-
Confidence 677889999999999999886 44444444454444444332211 1236899999999999998655
Q ss_pred CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
....+.+..+.+++..++++.|.+++..+......-.+.+...++.+++.+..+|+|. +..||..|...+........+
T Consensus 163 s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~l~~~~s~~v~ 241 (1549)
T KOG0392|consen 163 SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQFLVPAPSIQVK 241 (1549)
T ss_pred HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHhhhhhHHHHh
Confidence 5667788888899998999999999988876554333333456778899999999997 889999998888777655421
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC-c-HHHH-HhH-HHHHHHHHHhhcCCCcChhHHHHH
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-P-RFLR-RQL-VDVVGSMLQIAEAESLEEGTRHLA 294 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~-~~~~-~~~-~~li~~ll~~~~~~~~~~~vr~~a 294 (919)
........++..++..+..... -.+. .......+.+++... . ..+. ... ..+++-++..+. +.-..+|..+
T Consensus 242 -l~~~~i~~lv~~l~~~l~~ldd-l~~s-~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~--~~i~sv~~a~ 316 (1549)
T KOG0392|consen 242 -LMVQKIAKLVHTLWSFLLELDD-LSSS-TASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLR--HTISSVRRAA 316 (1549)
T ss_pred -hhHhHHHHHHHHHHHHHHHhhh-cchh-hHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHH--HHHHHHHHHH
Confidence 1122223333333443333221 1111 111122222222111 0 0000 001 123333333332 2346678889
Q ss_pred HHHHHHHHhh
Q 002465 295 IEFVITLAEA 304 (919)
Q Consensus 295 l~~l~~l~~~ 304 (919)
++.+..+.+.
T Consensus 317 l~~l~~lle~ 326 (1549)
T KOG0392|consen 317 LETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHhc
Confidence 9999999886
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.44 E-value=0.035 Score=61.09 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=90.5
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchh
Q 002465 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (919)
Q Consensus 143 ~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (919)
+-...++...+ ++...+..|...+....+++|+ ..+..+..++.+..|. +..||..|++.|..++..-
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~------ 90 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN------ 90 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T-------
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH------
Confidence 33444555555 3567788888888877777665 4667788888888897 9999999999998888642
Q ss_pred hHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHH
Q 002465 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (919)
Q Consensus 223 ~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~ 302 (919)
..+++.+..+|.++++.+++..+..+-.+|..+....+... +..++..+.. ....++.+|..++.||..-.
T Consensus 91 ---~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t---L~~lf~~i~~---~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 91 ---PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT---LTGLFSQIES---SKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH------HS-HHHHHHHHHHHHHHG
T ss_pred ---HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHh---cccCchHHHHHHHHHHHHHH
Confidence 25677888999999998888888888888888887665422 2333333321 12346789999999986544
Q ss_pred h
Q 002465 303 E 303 (919)
Q Consensus 303 ~ 303 (919)
.
T Consensus 162 ~ 162 (556)
T PF05918_consen 162 K 162 (556)
T ss_dssp G
T ss_pred h
Confidence 3
No 149
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.43 E-value=0.033 Score=56.04 Aligned_cols=230 Identities=12% Similarity=0.129 Sum_probs=149.6
Q ss_pred cccchHHHHHHHHHHHcCCCcch----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCC
Q 002465 353 SNYSVGQECLDRLAIALGGNTIV----PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (919)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~ 428 (919)
..+.-|..+|..+...++++.+. ..+..++...+ .+|..-..++.++.++... ...-......++..+.....
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~-~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKM-KNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhC-cCCChhhHHHHHHHHHHhCC
Confidence 45666778888877777754333 34555555555 4666666668888887732 22222334556666655443
Q ss_pred --CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHH
Q 002465 429 --DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (919)
Q Consensus 429 --d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~ 506 (919)
.--...|..+...+..+.+.....+ ...-..++..+++.+..+.+|+--..++..+..+....+ +.++.+.+.+
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---~~~~~e~lFd 166 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD---ISEFAEDLFD 166 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHH
Confidence 2346789999999999888876665 556678888889988887889988888998888888876 3567777776
Q ss_pred HHHHHhh----cC--Ch--hHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh
Q 002465 507 KLLVLLQ----NG--KQ--MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 507 ~L~~~l~----~~--~~--~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~ 578 (919)
.+...+- .+ ++ -.++..-.++-....+ ... |.+..+|.|.+-|.. +....|..+++++...+..
T Consensus 167 ~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-~~~---fa~~~~p~LleKL~s----~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 167 VFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-TPL---FAPFAFPLLLEKLDS----TSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-cHh---hHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHHH
Confidence 6655431 11 11 1223222222222221 122 445678888887743 2334777788888888888
Q ss_pred hChhhhhhhHHHHHHHHHH
Q 002465 579 VGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 579 ~~~~~~~~~~~~i~~~l~~ 597 (919)
.|.+.+.+|...+.+.+..
T Consensus 239 y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALKF 257 (262)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 150
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.43 E-value=0.21 Score=51.89 Aligned_cols=354 Identities=15% Similarity=0.125 Sum_probs=182.8
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCC--CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh
Q 002465 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD--SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (919)
Q Consensus 56 ~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~--~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~ 133 (919)
.++..++.+++....++..++...++-.++.... ...+.......+...-...+..|.. .+..+-...+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 5667788888877778888899988888887741 0111111111111112234556654 577777778888888876
Q ss_pred cc---cCCCCcchhHHHHHHhhcC-CChhHHHHHHHHHHHhhhhhh--hhcc--ccHHHHHHHHHHhhCCCCChHHHHHH
Q 002465 134 NI---LPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTLT--PHLKHLHAVFLNCLTNSNNPDVKIAA 205 (919)
Q Consensus 134 ~~---~~~~~w~~ll~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~--~~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (919)
.- .+.....-....+...+++ .++..+..+..||..+...-. ..+. .-...+++.+. +...+.+++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 42 1212444566777777776 566778888888888775421 1111 12334444443 332367777777
Q ss_pred HHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHH-H-----HHhHHHHHHHHHH
Q 002465 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF-L-----RRQLVDVVGSMLQ 279 (919)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~-----~~~~~~li~~ll~ 279 (919)
+-|+-.+. +-+.....-....+++.+.+++.... .+.+..-++.++..+++..+.. . .+.+..=+...++
T Consensus 221 ifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 221 IFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 77665443 11100001112345666666666533 4677777888888888877421 1 1111111112222
Q ss_pred hhc-CCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchH
Q 002465 280 IAE-AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (919)
Q Consensus 280 ~~~-~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a 358 (919)
.+. .+-.|++++. .+++|..-... ..+....+.+|...+..-.+ +|...-.++ ..|+
T Consensus 297 ~L~~rkysDEDL~~-di~~L~e~L~~---svq~LsSFDeY~sEl~sG~L----------~WSP~Hk~e------~FW~-- 354 (442)
T KOG2759|consen 297 SLEERKYSDEDLVD-DIEFLTEKLKN---SVQDLSSFDEYKSELRSGRL----------EWSPVHKSE------KFWR-- 354 (442)
T ss_pred HHHhcCCCcHHHHH-HHHHHHHHHHH---HHHhhccHHHHHHHHHhCCc----------CCCcccccc------chHH--
Confidence 222 2333455443 34444433331 11111112223333222111 232211100 0111
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHHH--HHHHHHhhCCCCCHhHH
Q 002465 359 QECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRVR 435 (919)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~--l~~~l~~~l~d~~~~vr 435 (919)
+-.+++- .+. -.++..+..+++ +.++..-..|+.-+|......++... .+.+ .=..+...+++++|.||
T Consensus 355 -eNa~rln----enn--yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vr 426 (442)
T KOG2759|consen 355 -ENADRLN----ENN--YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVR 426 (442)
T ss_pred -HhHHHHh----hcc--HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHH
Confidence 1111111 111 123444445555 44577778888889988887765211 1111 12456667899999999
Q ss_pred HHHHHHHHHhhh
Q 002465 436 WAAINAIGQLST 447 (919)
Q Consensus 436 ~~a~~~L~~l~~ 447 (919)
+.|+.++-.+..
T Consensus 427 y~ALlavQ~lm~ 438 (442)
T KOG2759|consen 427 YHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999998877653
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.021 Score=65.23 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHHHhH-HHHHHHHHhhCCC-CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 002465 390 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~~~~~~~l-~~l~~~l~~~l~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~ 467 (919)
+.+.|..+...|+.+..+..-.....+ ..++...+..++| ++|..|.=++.|||++-+++...--...-......++.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 367899999999999988765444333 3677778888888 48999999999999998876542112334456677888
Q ss_pred hccCCCChHHHHHHHHHHHHHHhcCCC----c------ccc-----CcHHHHHH----HHHHHhhcCChhHHHHHHHHHH
Q 002465 468 AMDDFQNPRVQAHAASAVLNFSENCTP----E------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 528 (919)
Q Consensus 468 ~l~d~~~~~v~~~a~~al~~l~~~~~~----~------~l~-----~~l~~i~~----~L~~~l~~~~~~v~~~~l~al~ 528 (919)
.|.| +.++||.+|..||..|+.+... . .+. .-.+..+. .++.++++..+.+|..+..+++
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8898 8999999999999999987421 1 000 11233333 5667778888999999888888
Q ss_pred HHHHhhHHHH
Q 002465 529 SVADSSQEHF 538 (919)
Q Consensus 529 ~l~~~~~~~~ 538 (919)
.++.....++
T Consensus 729 ~~~~g~~~~~ 738 (1387)
T KOG1517|consen 729 HFVVGYVSHL 738 (1387)
T ss_pred HHHHhhHHHh
Confidence 8776555443
No 152
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.42 E-value=0.0074 Score=69.63 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=134.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
+...+.....|.|..+-.-++..|..++.+.+..+.+|...++|.++..+.+..+.+|.++..++-.++.. ..
T Consensus 296 l~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~ 368 (815)
T KOG1820|consen 296 LGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-------TP 368 (815)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------cc
Confidence 44444445568889999999999999999999888899999999999999999999999999888887762 34
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCc-cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
+..+++.+...+.+ .++.++..+...+...+...++. .-..-+..+++.+.....+.+..||..++.+++.+..+.|+
T Consensus 369 l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 369 LSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 67888999999999 99999999999999999988732 23355788899999999999999999999999999999986
Q ss_pred H-HHHhHhhhh
Q 002465 537 H-FQKYYDAVM 546 (919)
Q Consensus 537 ~-~~~~~~~i~ 546 (919)
. +..|+..+-
T Consensus 448 ~~~~k~L~~~~ 458 (815)
T KOG1820|consen 448 EVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHhhc
Confidence 4 445554444
No 153
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.41 E-value=0.083 Score=58.25 Aligned_cols=145 Identities=10% Similarity=0.210 Sum_probs=92.1
Q ss_pred HHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccC
Q 002465 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (919)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (919)
...|+.+.+ .++.++.-|...|.++...++ ...+..+..++....| .+..||..|...|-.+|..-+ .
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~-----~ 92 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDNP-----E 92 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------T
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHH-----H
Confidence 334444454 367889999999999998886 4567888999999999 899999999999988887643 5
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH-HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~ 578 (919)
+++.+...|.++|++.++.-...+=.+|.++...-+. .+...+.++.+. . .+...+|.+++..+..-...
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~------~---~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS------K---SGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HS-HHHHHHHHHHHHHHGGG
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------c---cCchHHHHHHHHHHHHHHhh
Confidence 8999999999999988877666666677666655442 222233333221 1 12235888888888765556
Q ss_pred hChhhhh
Q 002465 579 VGKDKFR 585 (919)
Q Consensus 579 ~~~~~~~ 585 (919)
++++.+.
T Consensus 164 l~~~~~~ 170 (556)
T PF05918_consen 164 LKPELLT 170 (556)
T ss_dssp S-TTTS-
T ss_pred CcHHHhh
Confidence 6656555
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.39 E-value=0.031 Score=58.04 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=138.8
Q ss_pred hCCCCHHHHHHHHHHHHHHHHh--cHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhc--hhHHhhhhhhh
Q 002465 386 LAAPEWQKHHAALIALAQIAEG--CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--PDLQNQFHPQV 461 (919)
Q Consensus 386 l~~~~~~~r~aal~~l~~i~~~--~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~l 461 (919)
+.+.....|.+++..+-.+... ..+.+......++..+.++++-..+.-+..|+.+++-++-.++ ... ...+..+
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~~ 130 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEEL 130 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHHH
Confidence 3456688999999988776643 4556667788899999999987777777788889998888765 444 5778899
Q ss_pred HHHHHhhccCCC-ChHHHHHHHHHHHHHHhcCCCccccCcHH---HHHHHHHHH--hhc----------CChhHHHHHHH
Q 002465 462 LPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLD---GIVSKLLVL--LQN----------GKQMVQEGALT 525 (919)
Q Consensus 462 l~~l~~~l~d~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~---~i~~~L~~~--l~~----------~~~~v~~~~l~ 525 (919)
.|.|.+.+.|.. .+.+|..++.+|+-.+-..+.+ . .-.. ..++.+... .+. +++.+...++.
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~-~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSD-E-EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-h-hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 999999888832 2456667766766654433321 1 1222 333422221 111 13578999999
Q ss_pred HHHHHHHhhHH-HHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhC---hhhhhhhHHHHHHHHHHHh
Q 002465 526 ALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG---KDKFRDDAKQVMEVLMSLQ 599 (919)
Q Consensus 526 al~~l~~~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~---~~~~~~~~~~i~~~l~~l~ 599 (919)
+.+.++..++. .+..++...+|.|...|.. ....+|..|-++|+.+-.... .+...+..+.+++.+.++-
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La 282 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDS----DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELA 282 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 99999988775 4667788889999998853 245688888888887754332 1222344556666555543
No 155
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.38 E-value=0.00024 Score=44.60 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
++|.+++.++|+++.||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 156
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.014 Score=59.35 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHH-HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHH
Q 002465 387 AAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA 464 (919)
Q Consensus 387 ~~~~~~~r~aal~~l~~i~~~~~~~~~-~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~ 464 (919)
.+.+...|+.|+.-|..+++....... -.+ ..+..++..+++.++.+|+.|++.||..+..-+..- ... -...++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHH
Confidence 356789999999999999887654221 111 223444448999999999999999999998765432 332 3357778
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhHHH
Q 002465 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEH 537 (919)
Q Consensus 465 l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~-~i~~~L~~~l~~--~~~~v~~~~l~al~~l~~~~~~~ 537 (919)
|+..+...++..+|..|..|++.++++..+. ...++. .=...|..++++ .+...+..++..++.+......+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 8887776466788999999999999987643 222211 115677788888 45778888888999888765543
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.29 E-value=0.009 Score=59.60 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=121.7
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcc--hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh--hcccc
Q 002465 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTPH 181 (919)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~--~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~~~~~ 181 (919)
+.++..|....++.++..+..+++..+.+......+. ..++.+...+.++++.+|..|+.++..++..... .+..|
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 3567778876789999999999998876544433343 4588899999999999999999999988765432 23335
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 002465 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (919)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (919)
++.++..+. ..+-+..++.+++++|.++.-.. .....+...+|.+ ..++..++...+..++++|..+.+.
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLtv~~---~~~~~l~~~i~~l----l~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLTVTN---DYHHMLANYIPDL----LSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCc---chhhhHHhhHHHH----HHHHHcCChHHHHHHHHHHHHhccC
Confidence 555554433 23336789999999999885321 1222333444444 4555678889999999999999764
Q ss_pred CcHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 262 ~~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
+......+. +....++.++.. +...++...++.++..+.+.
T Consensus 165 -p~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 -PDMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINEN 206 (254)
T ss_pred -HHHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHHh
Confidence 333333222 233344444432 34566666667776666663
No 158
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.92 Score=56.22 Aligned_cols=314 Identities=16% Similarity=0.188 Sum_probs=180.6
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~-~~~v~~~~l~al~~l~~~~~~ 536 (919)
..--+..+.+.+.. +++..|-.+..++.+++...+.. ||+..+.+..+.-+.+. ++..|..-.-++|.+-+..|.
T Consensus 874 ~~~~~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs 949 (2067)
T KOG1822|consen 874 RSSALTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGS 949 (2067)
T ss_pred HHHHHHHHhhhhcc-CChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 33444455666666 88999999999999999988743 78888888777766654 466677777788888776653
Q ss_pred HH-HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 002465 537 HF-QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (919)
Q Consensus 537 ~~-~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (919)
-- .+++.+-+..++..-+ |.....++.-++.++..+....|+ .+.-++...+..+..+.-+....+-.++...-+
T Consensus 950 ~~s~qhl~t~v~illal~~---Ds~~p~VqtwSL~al~~i~~s~~p-~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R 1025 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALAT---DSTSPVVQTWSLHALALILDSSGP-MFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNR 1025 (2067)
T ss_pred CCCchhcccHHHHHHHHhh---cCCCchhhhhHHHHHHHHHcCCCc-eehhhHHHHHHHHHHHcCCCCcchhhhhhhhcc
Confidence 21 2455665666666543 333445677778888888777663 467888888888887544221222123333333
Q ss_pred HHH------HHHHHhcCCcccchh-----hhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechh
Q 002465 616 AWA------RLCKCLGQDFLPYMS-----VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (919)
Q Consensus 616 ~~~------~l~~~~g~~~~~~l~-----~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (919)
++. .+..++|++..|-.. .+-...+..... ......
T Consensus 1026 ~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~al---------------------------------lls~~d 1072 (2067)
T KOG1822|consen 1026 CFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACAL---------------------------------LLSHSD 1072 (2067)
T ss_pred ccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHH---------------------------------hcCCCc
Confidence 333 666667766654332 111111111100 000000
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHH-HHcC-------CCCCC
Q 002465 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA-IEKG-------LAPGR 756 (919)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~-------~~~~~ 756 (919)
....+.|++++-.+....+. .-..+.++..+..++... +--.|++++.++..+.+.-..- .+.. .....
T Consensus 1073 ~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~-~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~ 1149 (2067)
T KOG1822|consen 1073 PLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSS-YLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETS 1149 (2067)
T ss_pred cchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcch-hhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhC
Confidence 11234577777777664443 234566777777766654 4567888899998887653211 1110 00000
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 002465 757 NESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT 820 (919)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~ 820 (919)
...+..+.. -+=..++..+..+.|...+..+++.+..+.+.... +-+..++.....++.
T Consensus 1150 ~d~~~~pe~-gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~~~~~----~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1150 PDANIRPEA-GLEGALFIMLDTETDNKLLKNILETLSRMLNSLAD----ELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred hhhhcCccc-cchHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHH
Confidence 011111000 00123455667788889999999999987766433 445566666666666
No 159
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.26 E-value=0.091 Score=56.23 Aligned_cols=261 Identities=23% Similarity=0.221 Sum_probs=149.3
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
...+.+.+.+.++ +..+|..|...++.+-.. ..++.+...+.+.++.+|..+..+|..+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~---------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSE---------------EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4666777888887 899999998875443321 234445556667888999999887776632
Q ss_pred HHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 002465 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (919)
Q Consensus 264 ~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~ 343 (919)
+ ..++.++..+.+ +.+..+|..+...+..+... .. +..++..+.+......+...
T Consensus 104 ~-------~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~a----~~~l~~~l~~~~~~~a~~~~- 158 (335)
T COG1413 104 P-------EAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------RA----LDPLLEALQDEDSGSAAAAL- 158 (335)
T ss_pred h-------hHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------hh----hHHHHHHhccchhhhhhhhc-
Confidence 1 122222333332 56788999998888877652 11 22233333222100000000
Q ss_pred CCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHH
Q 002465 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (919)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l 423 (919)
+......+..+... ++. .-.+...+.+...+.+.+..+|.++..+++.+.... ..+.+.+
T Consensus 159 ----~~~~~~~r~~a~~~---l~~-----~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 ----DAALLDVRAAAAEA---LGE-----LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred ----cchHHHHHHHHHHH---HHH-----cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 00001112222222 221 122344556667778888899999999999876653 4555677
Q ss_pred HhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHH
Q 002465 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (919)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (919)
...+.|+++.||..++..+|.+.. ....+.+...+.+ .++.++..+..++. .. ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALED-EDVILALLAAAALG----AL-------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------Cchh
Confidence 778899999999999988887542 3445566667776 66666655555554 11 1112
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 504 IVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 504 i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
-...+...+.+....++..+..+++.+.
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2233344455555566655555555544
No 160
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.24 E-value=1.4 Score=57.47 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHH--HHHHHHHHHHHHH
Q 002465 37 EQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSI 112 (919)
Q Consensus 37 ~~r~~Ae~~L~~~~~~--~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~--~~~~ik~~ll~~l 112 (919)
.....|.+.++.+... +-..++...+.-.....++++|..++.....++..... .-..-+.. ....+.+.++..-
T Consensus 459 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~a 537 (2341)
T KOG0891|consen 459 DDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVA 537 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHh
Confidence 3345566666655432 11122333333334578999999998888777765311 00111111 2334444444444
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHh
Q 002465 113 QLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNC 192 (919)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 192 (919)
..++++.+|...-..+. ....+...-|+.+..++..+.+..-..++.+...+|.++..-+..+.+++........+-
T Consensus 538 ia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~ 614 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTE 614 (2341)
T ss_pred ccCCCcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhch
Confidence 44566666654433333 211222345677777778788877788888898999888866655444343333332222
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHH
Q 002465 193 LTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (919)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 272 (919)
++-.....+.....+-+..++.. .......++..++..+...+.+.+..+...+..++.+++...+..+..+.+.
T Consensus 615 l~~sg~~r~~~~~a~~~~~~i~~-----~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~ 689 (2341)
T KOG0891|consen 615 LEFSGMARTKEESAKLLCELIIS-----SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDE 689 (2341)
T ss_pred hhhcchHHhHHHHHHHhhHHHHH-----HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccch
Confidence 22211111111111111122211 1112233333444555555556666777788888888888776555444444
Q ss_pred HHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 273 VVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 273 li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
.+..+...+.. ......|..++..+..+.+.
T Consensus 690 ~~~~~~~~l~~-~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 690 LFSLIIKMLQD-QSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHHHHHHHHHH-hhhhhchhHHHHHhhhhhcc
Confidence 44333333321 12344577888888888884
No 161
>PF05536 Neurochondrin: Neurochondrin
Probab=97.23 E-value=0.55 Score=53.05 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCH-hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 002465 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (919)
Q Consensus 391 ~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l 469 (919)
-..+.-|+..++.++....-.-.+.+-.-+|.++..+..... .+..-|+.+|..++. .+.....-.....++.+.+.+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHH
Confidence 345556666666666522111125566777888887765555 888888999999883 333332233457888888888
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCcccc---CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH------HHHH
Q 002465 470 DDFQNPRVQAHAASAVLNFSENCTPEILT---PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE------HFQK 540 (919)
Q Consensus 470 ~d~~~~~v~~~a~~al~~l~~~~~~~~l~---~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~------~~~~ 540 (919)
.+ .+...+.|...+..++...+..... ..+..+++.+...+.......+-.++..++.+....+. .-..
T Consensus 150 ~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 76 5677899999999998876643332 23456667777777766667777888888888776631 1234
Q ss_pred hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChh
Q 002465 541 YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (919)
Q Consensus 541 ~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~ 582 (919)
+...+...+..++++.. ...-|..++...+.+....|.+
T Consensus 228 W~~~l~~gl~~iL~sr~---~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRL---TPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhChH
Confidence 77888888999886533 3445777888888888877743
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.21 E-value=0.14 Score=54.74 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHh
Q 002465 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (919)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~ 433 (919)
.+..+...+..+.... ..+.+.+...+.+++|.+|..++.+++.+.. .+..+.+...+.+.++.
T Consensus 196 vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~ 259 (335)
T COG1413 196 VRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVI 259 (335)
T ss_pred HHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchH
Confidence 4445555555444211 3455667788899999999999999887533 34445566677888888
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 434 vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
++..+...++. .........+...+.+ ....++..+..++..+....
T Consensus 260 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 260 LALLAAAALGA-----------LDLAEAALPLLLLLID-EANAVRLEAALALGQIGQEK 306 (335)
T ss_pred HHHHHHHHhcc-----------cCchhhHHHHHHHhhc-chhhHHHHHHHHHHhhcccc
Confidence 88777666551 1122333444555556 67788888888877765443
No 163
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.16 E-value=0.0061 Score=56.86 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCcchhHHHH------------HHhhcCCChhHHHHHHHHHHHhhhhhhhh------
Q 002465 119 SISKKLCDTVSELASNILPE---NGWPELLPFM------------FQCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (919)
Q Consensus 119 ~vr~~~~~~i~~i~~~~~~~---~~w~~ll~~l------------~~~~~s~~~~~r~~al~~l~~l~~~~~~~------ 177 (919)
.+|..+..++..+++...++ +.|+.++|.- .-.+.++++..|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888888999998873332 5788877765 22345678899999999999997754322
Q ss_pred -------ccc-------cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcC
Q 002465 178 -------LTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (919)
Q Consensus 178 -------~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~ 243 (919)
|.+ .+.++...+...|+.+.+..+....++|+..++..-+-. ..-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~---rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH---RLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh---hcCHhHHHHHHHHHHHHHhcC
Confidence 222 234556666777877767788889999999999875421 222477888888888888889
Q ss_pred ChHHHHHHHHHHHHHHccCc
Q 002465 244 NEATAQEALELLIELAGTEP 263 (919)
Q Consensus 244 ~~~~~~~a~~~l~~l~~~~~ 263 (919)
|++++..++.++..+....+
T Consensus 158 d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999998876543
No 164
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.13 E-value=0.0051 Score=56.73 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=96.8
Q ss_pred chHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC-----CCCCHhHHHHHHHHHHHhhh
Q 002465 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RDPHPRVRWAAINAIGQLST 447 (919)
Q Consensus 374 ~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-----~d~~~~vr~~a~~~L~~l~~ 447 (919)
-.|.+++.+...++. .+|..|..++..+|.+..--+. .-. .+.... .+.+........ +..
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~-----~~k---~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPY-----KHK---SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH-----HHh---cccccCCccccccccccchhhHH-----hhc
Confidence 356777777777764 4699999999999988643322 111 111111 111222222222 111
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 002465 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (919)
Q Consensus 448 ~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al 527 (919)
...+...+-|...++..+++.|+|..-..-...+..++..++...+... .||++.+++.++..+.+.+...++..+.-+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 2211221345667888999999994444556688899999998888666 699999999999999988889999998888
Q ss_pred HHHHHh
Q 002465 528 ASVADS 533 (919)
Q Consensus 528 ~~l~~~ 533 (919)
+.++..
T Consensus 153 ~~lv~i 158 (160)
T PF11865_consen 153 ADLVSI 158 (160)
T ss_pred HHHHHH
Confidence 888754
No 165
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.12 E-value=0.81 Score=52.44 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 002465 183 KHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (919)
Q Consensus 183 ~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (919)
..++.++...++ +. ...++.+|++.+.+...+.+ .....|..+-+|+.+.+++-..+|+.++..|.++...
T Consensus 575 ~~V~~mi~Rr~~~d~-k~~v~k~a~~~l~S~l~~cD-------~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDD-KAPVKKAACSLLKSYLSYCD-------EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccCC-CcccchhhHHHHHHHHhccc-------hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 456667777777 44 67899999999988887653 1234445577777777888888999999999999887
Q ss_pred CcHHH---HHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHH
Q 002465 262 EPRFL---RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (919)
Q Consensus 262 ~~~~~---~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~ 302 (919)
.|..+ ..++..++. ++. +.+..+...|+.+|..+.
T Consensus 647 ~pr~~~~~~~wl~~li~----~~~--d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 647 DPRLFSLSSKWLHTLIS----MLN--DTESDVTEHARKLIMKVL 684 (1529)
T ss_pred CchhhhhhHHHHHHHHH----HHh--ccHHHHHHHHHHHHHHHH
Confidence 77655 223333333 222 345566667777665443
No 166
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.05 E-value=0.38 Score=50.25 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=116.8
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCC----------CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhh--h
Q 002465 108 LLQSIQLESAKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI--G 175 (919)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~----------~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~--~ 175 (919)
|+..|.. -+...|+.++.+.+.+.+..... ..||+++..+..+..+++... .+-.++...+++- .
T Consensus 81 Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 81 LIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTSHHHH
T ss_pred HHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhhHHHH
Confidence 3344443 35556666666666666653322 357899999999888776432 2333344433321 1
Q ss_pred hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002465 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (919)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l 255 (919)
..+.. +..+-.+.+..+.+ +-+|-..|+.++..++.... ....+.+..+...++.....++.+++.-.+..++..|
T Consensus 158 ~~iL~--~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 158 KIILY--SECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHT--SGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHhC--cHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 11100 11222344667776 88999999999988876532 2233455667778888888889999999999999999
Q ss_pred HHHHccC--cHHHHHhHH--HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 256 IELAGTE--PRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 256 ~~l~~~~--~~~~~~~~~--~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
+++.... ...+..|+. .-+..++.++. +....++..|+.++.-++.+
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhC
Confidence 9998533 455556654 45666667775 45688999999999988884
No 167
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=97.03 E-value=0.012 Score=50.02 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=79.9
Q ss_pred ccCcHHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 002465 497 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (919)
Q Consensus 497 l~~~l~~i~~~L~~~l~~----~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l 572 (919)
+.+++=.++..+-..+.+ .+..-|..++.+++.++...+.....+.++++-.|...+.. ..++..+++|.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 445666666666666665 44678999999999999988888888888988888888742 25888899999
Q ss_pred HHHHhhhChhhhhhhHHHHHHHHHHHhc
Q 002465 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (919)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~~ 600 (919)
..+.+.++.+...|.+++++-.+++.++
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988887664
No 168
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.94 E-value=0.0018 Score=40.63 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~ 408 (919)
++|.+.+.++|++|++|.+|..+++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4677888999999999999999999998764
No 169
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.86 E-value=0.019 Score=52.97 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh-cHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHh---hhhhch
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEG-CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL---STDLGP 451 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~-~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l---~~~~~~ 451 (919)
...+|.+.+.+...+.-.|..|..++..+.+. .++.+.+.+++++..+...|+..++.|..+++.+|.++ +...++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34566666777777777888888888888777 77788899999999999999999999999999999999 677777
Q ss_pred hHHhhhhhhhHHHHH
Q 002465 452 DLQNQFHPQVLPALA 466 (919)
Q Consensus 452 ~~~~~~~~~ll~~l~ 466 (919)
.+ .+|+.+++|.+-
T Consensus 117 aL-vPyyrqLLp~ln 130 (183)
T PF10274_consen 117 AL-VPYYRQLLPVLN 130 (183)
T ss_pred HH-HHHHHHHHHHHH
Confidence 77 789999999887
No 170
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.84 E-value=0.8 Score=51.54 Aligned_cols=176 Identities=13% Similarity=0.179 Sum_probs=114.7
Q ss_pred ccchHHHHHHHHHHHcCCCcchHHHHHHHH--Hh-----hCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh
Q 002465 354 NYSVGQECLDRLAIALGGNTIVPVASEQLP--AY-----LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (919)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~~-----l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~ 426 (919)
....|...|+++...+....+...++..+. .. ..-.++..|.-.+..|..-... ....+.++..+..+
T Consensus 253 V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 253 VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFDG 327 (501)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhcc
Confidence 344566666666655544444444444433 10 0012456666555544432111 14557788888888
Q ss_pred CCCC--CHhHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcc-------CCCChHHHHHHHHHHHHHHhcCCC
Q 002465 427 FRDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 427 l~d~--~~~vr~~a~~~L---~~l~~~~~~~~~~~~~~~ll~~l~~~l~-------d~~~~~v~~~a~~al~~l~~~~~~ 494 (919)
+... +.++|..++..+ .....++++.......+.++..+...++ +..+...|..+..+|+.+....+.
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 8877 889999999988 8887777765544444555555555552 113567899999999999998873
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 495 ~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
.+..- -.++..|+..+....+.++..+-+|+++++.....
T Consensus 408 -l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 408 -LFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred -ccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 33222 45678888888888899999999999999887664
No 171
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.81 E-value=0.021 Score=62.93 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=164.2
Q ss_pred cCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHH
Q 002465 242 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 321 (919)
Q Consensus 242 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 321 (919)
-.+.+.+..-+..|.+.++..++.+.. ..+++.++..+.-.+.... .+..+..+... -...+|-..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~a~~~----~ltpl~k~~k~--------ld~~eyq~~ 330 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGDAASD----FLTPLFKLGKD--------LDEEEYQVR 330 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccccchh----hhhHHHHhhhh--------ccccccccc
Confidence 446667777777777766666554432 2344444443321110111 11222222221 012336677
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002465 322 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (919)
Q Consensus 322 li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (919)
++|.+++++...+ -..+....+-+..+..++.++.+...++|.+...+.+.+...|+-.+.++
T Consensus 331 i~p~l~kLF~~~D-----------------r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 331 IIPVLLKLFKSPD-----------------RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred hhhhHHHHhcCcc-----------------hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 8888888775442 12344444555666667776667778899999999999999999999999
Q ss_pred HHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHH
Q 002465 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 402 ~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a 481 (919)
..++....+. ..=.+++..+...-.|+++.+|...-.|+|.++.++.+.. .-..+.....+.+.| +-..-|.++
T Consensus 394 ~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkd-pf~paR~a~ 467 (690)
T KOG1243|consen 394 AVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKD-PFVPARKAG 467 (690)
T ss_pred HHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcC-CCCCchhhh
Confidence 9998877652 2224677777776779999999999999999998887644 223344445557888 777788888
Q ss_pred HHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 002465 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (919)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~ 534 (919)
..++....+-+.. ...-..|++.+....-+++..+|..+..++.......
T Consensus 468 v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 468 VLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 8888776665542 2445667777777778888888888877766544433
No 172
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.81 E-value=0.02 Score=48.08 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=77.4
Q ss_pred ccCcHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 002465 497 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (919)
Q Consensus 497 l~~~l~~i~~~L~~~l~~~~----~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l 572 (919)
+.+++=.++..+-+.+.+.+ ..-|..++.+++.+++..|.+...+.++++-.|...+. ..++|..+++|.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~------~~eL~~~al~~W 78 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE------IPELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------chhHHHHHHHHH
Confidence 34556666666666665544 35589999999999999998888899999988888874 234899999999
Q ss_pred HHHHhhhChhhhhhhHHHHHHHHHHHh
Q 002465 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (919)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (919)
..+.+.+..+...|.+++++-.+++.+
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888888888877654
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.79 E-value=0.46 Score=49.56 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=104.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh--
Q 002465 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (919)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-- 457 (919)
..+...+++++..+|..|+.++|-.+--..+...++++-++.. ++..+..||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~----~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQA----LQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4445678899999999999999988765554444555444444 3335899999999999998887765442222
Q ss_pred ------hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcC----ChhHHHHHHHHH
Q 002465 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG----KQMVQEGALTAL 527 (919)
Q Consensus 458 ------~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~----~~~v~~~~l~al 527 (919)
...++..+.+.+.+ .++.++..|+.++..++-.-. +.+ -+.++..|+-..=++ +..+|.-.-..+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 34688888899988 788999999999999875432 111 345555554433222 233443333333
Q ss_pred HHHHHhhHHHHHHhHhhhhHHHHHHHh
Q 002465 528 ASVADSSQEHFQKYYDAVMPFLKAILV 554 (919)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (919)
-..+.....+.....+.++|.+..++.
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344555555555543
No 174
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.72 E-value=0.37 Score=52.04 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
..++.+...++|+. +|..+++++|.+.. +..++.++..+.+ +.++..|..++..+.-
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-----------p~av~~L~~~l~d---~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGD-----------VEAAPWCLEAMRE---PPWARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCC-----------cchHHHHHHHhcC---cHHHHHHHHHHHHhhC
Confidence 56666667777755 88899999887643 2466777888877 3488888888877753
No 175
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.71 E-value=1.5 Score=49.33 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHH--HHHHHHHHccCC-CHHHHHHHHHHHHHhhccCCCCcccCC
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSL--TLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRL 96 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~--~~~l~~il~~~~-~~~~R~~a~i~L~~~i~~~~~~~w~~l 96 (919)
-|..+|..+.|++..+|+..-+.|+++.+. +|.-- +..|+....+.. ++-+|.++.++++.-+.+ +
T Consensus 24 ~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R--------l 95 (501)
T PF13001_consen 24 YLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR--------L 95 (501)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc--------C
Confidence 566667778899999999999999987653 23100 355666666544 788999999999888654 7
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 002465 97 SLHTQSSLKSMLLQSIQL 114 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~ 114 (919)
+.+.+..+...+++++..
T Consensus 96 ~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 96 DDEERRELLPSLLKGISK 113 (501)
T ss_pred CHHHHHHHHHHHHHhhcc
Confidence 888999999999999874
No 176
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.68 E-value=0.032 Score=57.38 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=113.3
Q ss_pred CCCHHHHHHHH-HHHHHHHH-hcH-HHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH---H--hhhhh
Q 002465 388 APEWQKHHAAL-IALAQIAE-GCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---Q--NQFHP 459 (919)
Q Consensus 388 ~~~~~~r~aal-~~l~~i~~-~~~-~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~---~--~~~~~ 459 (919)
.+.|+...+.. ..+..+.. ... ..+..+++-++|.++..+.|.++.+|..++.+|..+...+++.. . ....+
T Consensus 86 ~~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 86 RQPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred cCCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 34566544222 33343333 222 25668899999999999999999999999999999998776543 1 22345
Q ss_pred hhHHHHHhhcc--------CCCChHHHHHHHHHHHHHHhcCCCccccCc---HHHHH-HHHHHHhhc----CChhHHHHH
Q 002465 460 QVLPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTPEILTPY---LDGIV-SKLLVLLQN----GKQMVQEGA 523 (919)
Q Consensus 460 ~ll~~l~~~l~--------d~~~~~v~~~a~~al~~l~~~~~~~~l~~~---l~~i~-~~L~~~l~~----~~~~v~~~~ 523 (919)
.+.+++..++. + ....+-..+..++..++.......-.++ +..++ +.++..+.. ..+.++...
T Consensus 166 v~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 55556666665 3 4556778888888888764311111122 33333 324443321 247888999
Q ss_pred HHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 524 LTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 524 l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
+..+..++..+|.....|+..+++.+.+++++
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998854
No 177
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.67 E-value=0.1 Score=54.43 Aligned_cols=149 Identities=20% Similarity=0.275 Sum_probs=100.9
Q ss_pred hHHHHHH-HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 415 NLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 415 ~l~~l~~-~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
.+..++. .+.+++...++.||..++.|||-++-.-. ....+.++.+...+.. .+..|+..|+.++..++-..|
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcC
Confidence 3446665 44478899999999999999999886432 3455566666666655 578999999999999887766
Q ss_pred CccccCcH--------HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhh
Q 002465 494 PEILTPYL--------DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLR 565 (919)
Q Consensus 494 ~~~l~~~l--------~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr 565 (919)
...+.... ..+++.+.+.+.+.++.++..+...++.+.-...-.- .+.++..|.-.+-+....+...+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 54443333 4788888899999999999999999998865433110 244555555444443333333344
Q ss_pred hHHHHHHHHHH
Q 002465 566 AKSMECISLVG 576 (919)
Q Consensus 566 ~~ai~~l~~l~ 576 (919)
.|++.+-
T Consensus 174 ----Q~L~~Ff 180 (298)
T PF12719_consen 174 ----QCLSVFF 180 (298)
T ss_pred ----HHHHHHH
Confidence 3555543
No 178
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.64 E-value=1.1 Score=48.55 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=146.5
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHH
Q 002465 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (919)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (919)
...++..|..+.+..++..++..+. . ..-+..+..+.+.+.+.++.+|..+...|+.+- .+.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~ 117 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---A-----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQ 117 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---c-----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chH
Confidence 4466777755556777664433332 1 112334888999999999999999999998542 345
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcH
Q 002465 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (919)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~ 264 (919)
..+.+...+.+. ++.+|..++.+++..-. .. .+.+...+++.++.++..++.++..+-....
T Consensus 118 a~~~L~~~L~~~-~p~vR~aal~al~~r~~--------~~--------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a- 179 (410)
T TIGR02270 118 AEPWLEPLLAAS-EPPGRAIGLAALGAHRH--------DP--------GPALEAALTHEDALVRAAALRALGELPRRLS- 179 (410)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------Ch--------HHHHHHHhcCCCHHHHHHHHHHHHhhccccc-
Confidence 667777888887 89999988876665111 11 1233444568899999999999998864321
Q ss_pred HHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 002465 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (919)
Q Consensus 265 ~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~ 344 (919)
. +.+. ..+ .+.++.||..|+..+..+.. +.- .+.+.......
T Consensus 180 --~---~~L~----~al--~d~~~~VR~aA~~al~~lG~------------~~A----~~~l~~~~~~~----------- 221 (410)
T TIGR02270 180 --E---STLR----LYL--RDSDPEVRFAALEAGLLAGS------------RLA----WGVCRRFQVLE----------- 221 (410)
T ss_pred --h---HHHH----HHH--cCCCHHHHHHHHHHHHHcCC------------HhH----HHHHHHHHhcc-----------
Confidence 1 1122 122 36789999999988866533 111 12222211111
Q ss_pred CCccccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHH
Q 002465 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (919)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~ 424 (919)
......+ ....++. .|.+ ..++.+...++++. +|.+++.++|.+.. +..++.++
T Consensus 222 -------g~~~~~~--l~~~lal-~~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~ 275 (410)
T TIGR02270 222 -------GGPHRQR--LLVLLAV-AGGP----DAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCL 275 (410)
T ss_pred -------CccHHHH--HHHHHHh-CCch----hHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHH
Confidence 0011111 1111111 1322 45666667777655 89999999997644 24566667
Q ss_pred hhCCCCCHhHHHHHHHHHHHhhh
Q 002465 425 NSFRDPHPRVRWAAINAIGQLST 447 (919)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~ 447 (919)
..+.|+. ++..|.+++..+.-
T Consensus 276 ~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 276 EAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHhcCcH--HHHHHHHHHHHhhC
Confidence 7776654 89999999888764
No 179
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=2.3 Score=50.37 Aligned_cols=626 Identities=15% Similarity=0.138 Sum_probs=301.5
Q ss_pred hHHHHHHHHHhcCCChHH-----HHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhhccCCC-Cc
Q 002465 21 SAPFETLISHLMSTSNEQ-----RSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDS-FL 92 (919)
Q Consensus 21 ~~~l~~~l~~~~s~d~~~-----r~~Ae~~L~~~~~~~p~~~~~~l~~il~--~~~~~~~R~~a~i~L~~~i~~~~~-~~ 92 (919)
++-+..+++.+-++.+.. -+.--..|.++...-|.-.++.+..++. ++.+-..|..-...+.+.+...-. ..
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 345566677776664443 2333445666665445433333333322 345556666666666666654200 00
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc-ccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 002465 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (919)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~-~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~ 171 (919)
-.....+.+..+...+.+.+. +.++.+|..+-++...+... ..|.+.|.+++......+.+.+..+|..|+.++..+.
T Consensus 349 ~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L 427 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL 427 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 011122233334445555555 37899999999999988764 4566899999999999999999999999999998887
Q ss_pred hhhhh-------hccccHHHHHHHHHHhhCCCC------ChHHHHHHHH----------------------------HHH
Q 002465 172 QYIGD-------TLTPHLKHLHAVFLNCLTNSN------NPDVKIAALN----------------------------AVI 210 (919)
Q Consensus 172 ~~~~~-------~~~~~~~~l~~~l~~~l~~~~------~~~vr~~a~~----------------------------~l~ 210 (919)
...|- .+...+..-++.+..-+.+.. ....|..-.+ .+.
T Consensus 428 ~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~ 507 (1251)
T KOG0414|consen 428 DRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLE 507 (1251)
T ss_pred hcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhhhhhh
Confidence 65431 111122222222221111100 0000000000 000
Q ss_pred H----------------HHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHH
Q 002465 211 N----------------FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVV 274 (919)
Q Consensus 211 ~----------------l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li 274 (919)
. ++.++. +.-.|...+...+.++.+++-+.......+++..|...-...-..-...+..++
T Consensus 508 ~~~~s~~~~~~i~q~~~~vq~l~---d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl 584 (1251)
T KOG0414|consen 508 NEVESVPAENEIMQLKALVQFLE---DAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKML 584 (1251)
T ss_pred hhhcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 0 111111 112233334444445555555555555566666655332211111223344555
Q ss_pred HHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcc
Q 002465 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (919)
Q Consensus 275 ~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~ 354 (919)
+..+. .+.++|.....+...+.-. .+ .......- ..+...|+..+.+.... .
T Consensus 585 ~LVWs------kd~~i~e~v~~ayk~l~~~---~~-~n~~~~e~-~~ia~NL~~l~~~~s~~-----------------d 636 (1251)
T KOG0414|consen 585 PLVWS------KDKEIREAVENAYKQLYFR---PD-GNSKASEA-SSIAQNLSKLLIDASIG-----------------D 636 (1251)
T ss_pred hhhhC------CCccHHHHHHHHHHHHhcc---CC-CCchhhHH-HHHHHHHHHHHhccccc-----------------c
Confidence 54442 2344777777777666652 22 11111112 55566666655443211 1
Q ss_pred cchHHHHHHHHHHHcCCCcchHHHHH----HHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCC
Q 002465 355 YSVGQECLDRLAIALGGNTIVPVASE----QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP 430 (919)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~----~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~ 430 (919)
+..-.+.+..++. ...+-+.+++ .+.-...+..-..+..++..++-++.+.++.....++.++.. ++.+
T Consensus 637 ~~slE~vl~~lv~---~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~i---glg~- 709 (1251)
T KOG0414|consen 637 LTSLEEVLCELVA---RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQI---GLGE- 709 (1251)
T ss_pred hhhHHHHHHHHHh---CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHh---ccCc-
Confidence 2233445555443 2344444443 332223344455567888889988888877666666665553 3443
Q ss_pred CHhHHHHHHHHHHHhhhhhc-------hhHH---hhhhhhhHHHHHhh--ccCC-CChHHHHHHHHHHHHHHhcCCCccc
Q 002465 431 HPRVRWAAINAIGQLSTDLG-------PDLQ---NQFHPQVLPALAGA--MDDF-QNPRVQAHAASAVLNFSENCTPEIL 497 (919)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~-------~~~~---~~~~~~ll~~l~~~--l~d~-~~~~v~~~a~~al~~l~~~~~~~~l 497 (919)
|+....++..++.++..-. +.+. ...+-..+..++-. +... ....+...|..++..+...- +.+
T Consensus 710 -p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~P--e~l 786 (1251)
T KOG0414|consen 710 -PRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLP--EVL 786 (1251)
T ss_pred -HHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcCh--HHH
Confidence 5555555555544443211 1111 11222222222222 2210 12346667777777766521 211
Q ss_pred cCcHHHHHHHHHH----Hhh--------cCC-------hhHHHH-HHHHHHHHHHhhHHHHHHhHhhhhHHHHHH-----
Q 002465 498 TPYLDGIVSKLLV----LLQ--------NGK-------QMVQEG-ALTALASVADSSQEHFQKYYDAVMPFLKAI----- 552 (919)
Q Consensus 498 ~~~l~~i~~~L~~----~l~--------~~~-------~~v~~~-~l~al~~l~~~~~~~~~~~~~~i~~~l~~~----- 552 (919)
...++..+.. .+. ++. ..+.+. .+.++|.++-. ..-|++..++....-
T Consensus 787 ---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAik----qlvyiE~~i~~~~kRr~~~~ 859 (1251)
T KOG0414|consen 787 ---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIK----QLVYIEVCISKEFKRRKIKT 859 (1251)
T ss_pred ---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 2223332222 111 000 111222 33444443321 223555555522211
Q ss_pred -HhhcCC---cc-------------cchhhh-----HHHHHHHHHHh---hhChhhhhhhHHHHHHHHHHHhcC-CCCCC
Q 002465 553 -LVNATD---KS-------------NRMLRA-----KSMECISLVGM---AVGKDKFRDDAKQVMEVLMSLQGS-QMETD 606 (919)
Q Consensus 553 -l~~~~~---~~-------------~~~lr~-----~ai~~l~~l~~---~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~ 606 (919)
.....+ .+ ...+.+ ...+.+..++. -.|+. ..+..+.+++...+.+ +.-++
T Consensus 860 ~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~gek---~lLg~f~piv~e~c~n~~~~sd 936 (1251)
T KOG0414|consen 860 ELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGEK---SLLGRFAPIVVEGCRNPGLFSD 936 (1251)
T ss_pred HHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHhcCCCcCCC
Confidence 100000 00 000111 12233333332 12311 1234445555554432 33334
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHH
Q 002465 607 DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 686 (919)
Q Consensus 607 ~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 686 (919)
..++.++.-++++++..-- .|...-+|.++..++..|...+
T Consensus 937 p~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~I----------------------------------- 977 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRI----------------------------------- 977 (1251)
T ss_pred HHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCcee-----------------------------------
Confidence 3355566556666655432 3444556666666654443322
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHH
Q 002465 687 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (919)
Q Consensus 687 ~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 743 (919)
|..+.-.+|.++-..+.-+.||.+.++.- +.|. +..||++|+-.|..|+-.
T Consensus 978 -RsN~VvalgDlav~fpnlie~~T~~Ly~r----L~D~-~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 978 -RSNLVVALGDLAVRFPNLIEPWTEHLYRR----LRDE-SPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred -eecchheccchhhhcccccchhhHHHHHH----hcCc-cHHHHHHHHHHHHHHHHh
Confidence 12344468888999898888988876554 5665 789999999999999754
No 180
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.61 E-value=1.4 Score=47.57 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=153.4
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC-Cc
Q 002465 63 HLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GW 141 (919)
Q Consensus 63 ~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~-~w 141 (919)
.++. .++..+...|+.+|..++... -...+......+.+.+...+.+..+...+..+.++++.+.+....+. .|
T Consensus 108 ~lL~-~~d~~i~~~a~~iLt~l~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 108 NLLN-RQDQFIVHMSFSILAKLACFG----LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred HHHc-CCchhHHHHHHHHHHHHHhcC----ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 3443 467788899999998888653 12233344555666666777653345556666788888776432111 22
Q ss_pred -chhHHHHHHhhcCC--ChhHHHHHHHHHHHhhhh--hhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 002465 142 -PELLPFMFQCVSSD--SVKLQESAFLIFAQLSQY--IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (919)
Q Consensus 142 -~~ll~~l~~~~~s~--~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (919)
.+.++.+...++.. +......++.|+-.+.-. ..+.+ .-..+++.+.+.++.....+|-.-++.++.+++..-
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~--~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL--KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh--ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 23566666666542 334455555555444322 11111 124578888888877645566666778888888743
Q ss_pred cCcchh-----hHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc---HHHHHhHHHHHHHHHHhhcCCCcCh
Q 002465 217 TSSADR-----DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIAEAESLEE 288 (919)
Q Consensus 217 ~~~~~~-----~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~li~~ll~~~~~~~~~~ 288 (919)
.+.... ..+..-++.+++.+... +-.|++. ...+..+.+..+... ..|..|..++-...+.- +..|.+
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~r-k~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~s- 336 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQR-KYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKS- 336 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcC-CCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCC-
Confidence 211111 11121233444444321 0124443 344445544443321 23455655554322211 111211
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHH
Q 002465 289 GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA 368 (919)
Q Consensus 289 ~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~ 368 (919)
=.||..=+.. +...--.++..|...+... +| ...-.+|..-++.++++
T Consensus 337 ------e~FW~EN~~k----------f~~~~~~llk~L~~iL~~s-~d---------------~~~laVAc~Dige~vr~ 384 (429)
T cd00256 337 ------EKFWRENADR----------LNEKNYELLKILIHLLETS-VD---------------PIILAVACHDIGEYVRH 384 (429)
T ss_pred ------chHHHHHHHH----------HHhcchHHHHHHHHHHhcC-CC---------------cceeehhhhhHHHHHHH
Confidence 1334332221 0011123444555555322 11 12334566667778877
Q ss_pred cCC-CcchHH--HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002465 369 LGG-NTIVPV--ASEQLPAYLAAPEWQKHHAALIALAQIA 405 (919)
Q Consensus 369 ~~~-~~~~~~--l~~~l~~~l~~~~~~~r~aal~~l~~i~ 405 (919)
+|. +.+... .-..+.++++++|.++|+.|+.++..+.
T Consensus 385 ~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 385 YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 652 333322 3345667889999999999999998774
No 181
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.58 E-value=1.1 Score=46.63 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH---HH-HHhHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHhhhhh
Q 002465 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK---VM-VKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~---~~-~~~l~~l~~~l~~-~l~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
-|.+++++..++.|.+.....++..++|.++..-.. .+ ...+..++..+.+ .-.|.+.+++.+++.+|-++.--.
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 355888889999999999999999999999875332 22 2455566666655 345778899999999999887544
Q ss_pred chhHHhhhhh-hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 450 GPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 450 ~~~~~~~~~~-~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
+..- .+.+ .+...++..+.. ..|.|.-.-...+..+.+..
T Consensus 393 ~nka--~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 393 SNKA--HFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred Cchh--hccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhch
Confidence 3321 2322 456666776666 56677666666666665543
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.023 Score=60.36 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~-l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
-..+.+++.+.+.-.|+++..+++..--|.+. ..++..+++. .+|.+..||++|.-+||-++-.-
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-------- 583 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-------- 583 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecC--------
Confidence 34566778888999999988887754443322 2455555655 78999999999999999876321
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~ 537 (919)
...++..++.|.+.-|+.||...+.+|.-.|.+-+.. .-+..|-.+..+++..||..++-+++.+...+.+.
T Consensus 584 -~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 584 -RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred -cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 2455566666666568899999999999999887632 12344455667888999999999999999888888
Q ss_pred HHHhHhhhhHHHHHHHhh
Q 002465 538 FQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 538 ~~~~~~~i~~~l~~~l~~ 555 (919)
+.|-+..|...+.+++.+
T Consensus 656 Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred cChhHHHHHHHHHHHHhh
Confidence 888888888888888754
No 183
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.49 E-value=2.3 Score=49.08 Aligned_cols=144 Identities=11% Similarity=0.262 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCC-CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc
Q 002465 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (919)
Q Consensus 392 ~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 470 (919)
.+|..+...++.++-.-. ......+|.+.+-|. .....+|.....+++.+|.... ...+..+|.+...|.
T Consensus 946 ~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhc
Confidence 456666666666554433 334456777776663 4566788888888888876543 235677889999999
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHH
Q 002465 471 DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLK 550 (919)
Q Consensus 471 d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~ 550 (919)
| +++-||..+...|.+++.. + +..+-..++-..+..+-+.++.+|..+=-+++.+...-.+.| |+..++..+.
T Consensus 1017 D-p~~iVRrqt~ilL~rLLq~---~-~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1017 D-PSVIVRRQTIILLARLLQF---G-IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYII 1089 (1529)
T ss_pred C-chHHHHHHHHHHHHHHHhh---h-hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 9 9999999999999998863 1 223444444444444556778899999889998887766554 3445555554
Q ss_pred H
Q 002465 551 A 551 (919)
Q Consensus 551 ~ 551 (919)
.
T Consensus 1090 ~ 1090 (1529)
T KOG0413|consen 1090 A 1090 (1529)
T ss_pred H
Confidence 3
No 184
>PF05536 Neurochondrin: Neurochondrin
Probab=96.41 E-value=2.4 Score=48.00 Aligned_cols=321 Identities=16% Similarity=0.169 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhh-hChhhhhh--hHHHHHH
Q 002465 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-VGKDKFRD--DAKQVME 593 (919)
Q Consensus 517 ~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~-~~~~~~~~--~~~~i~~ 593 (919)
...+.-++..+++++..-.-.-.+-+-.-+|.|.+++.+..+ ......+++|+..++.. -|.+.+.. .++.+.+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 456777778888877622211224556678888888866433 34566688998888732 24444432 2333344
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCccc----chhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccc
Q 002465 594 VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLP----YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSME 669 (919)
Q Consensus 594 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~----~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (919)
.+.+ .....+.++..+..++...+....+ .+..+++.+-+.++...
T Consensus 148 i~~~--------~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~---------------------- 197 (543)
T PF05536_consen 148 IIPN--------QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH---------------------- 197 (543)
T ss_pred HHHh--------CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc----------------------
Confidence 3332 1224566777777777766644332 22333333333332110
Q ss_pred hhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccc------ccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHH
Q 002465 670 TITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG------FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (919)
Q Consensus 670 ~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~------~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 743 (919)
-..|...+..|+.+....+.. -..|...+...+...+.....+.-|..+..+...++..
T Consensus 198 ---------------~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 198 ---------------GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred ---------------cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 113566788888887777311 12377888888888888777788899999999999988
Q ss_pred HHHHHHcCCCCCCCHHHHHHHH-------HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhCC-------CCCHH
Q 002465 744 AKLAIEKGLAPGRNESYVKQLS-------DFIIPALVEALHKEPD---TEICASMLDSLNECIQISGP-------LLDEG 806 (919)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~e~~---~~~~~~~~~~l~~~i~~~g~-------~~~~~ 806 (919)
....|..+....+......-++ ...++.++.....+.. .......+.-+...|..+-. .+.++
T Consensus 263 ~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~ 342 (543)
T PF05536_consen 263 LGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPD 342 (543)
T ss_pred hChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHH
Confidence 7666654433211112211111 1122222222221111 12222233333333333211 25678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhh-------hhhhHHHHHHHHHHHHHHHHHHccccchh--
Q 002465 807 QVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKE-------ENEQEEEVFDQVGEILGTLIKTFKAAFLP-- 877 (919)
Q Consensus 807 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e-------~~e~e~~l~~~~~~~l~~l~~~~~~~~~~-- 877 (919)
.+.++.+.+...+...++--...- ++...|.. -.+.- -.|++..+++.+..++..+.+..+..+..
T Consensus 343 ~l~kl~~~l~e~~~~vle~L~~~~----d~~~~d~~-~vlAsvR~L~~WLaEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~ 417 (543)
T PF05536_consen 343 TLLKLRTSLSETFSAVLEYLRDVW----DESQKDPD-FVLASVRVLGAWLAEETSALRKEVYGLLPFLLSLYRESFQEAE 417 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccccchH-HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 777777777776665554322211 11111110 11100 01223336677777777777777665443
Q ss_pred --------hHHHHHHhHhhhh
Q 002465 878 --------FFDELSSYLTPMW 890 (919)
Q Consensus 878 --------~~~~l~~~~~~~~ 890 (919)
++.-++|.+....
T Consensus 418 ~~~~~~~d~~r~lLPaL~~lt 438 (543)
T PF05536_consen 418 PAREGPLDFLRFLLPALCHLT 438 (543)
T ss_pred cccccchhHHHHHHHHHhhhh
Confidence 3344677777765
No 185
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.3 Score=53.95 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchh
Q 002465 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (919)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (919)
+++..++-++.....+++-.+|.-.+..+..+.....+.-...+..+...+...+.|..|.||..|..+|+++-..-..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 3555566666777788999999999999998887544333355677888888899999999999999999998743222
Q ss_pred HHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHH
Q 002465 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (919)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~ 486 (919)
---.+...+...+++.|++.||..|...+.
T Consensus 160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 112566666677776689999998877664
No 186
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.32 E-value=2.4 Score=47.00 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHH
Q 002465 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (919)
Q Consensus 244 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (919)
..+...+....+..+.......+...+. ..+..+++++++++ ...++...+.++.++-+...+.+ .....+..++
T Consensus 66 s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD-~~~~le~~l~~lR~Ifet~~~q~---~~~s~~~~sI 141 (678)
T KOG1293|consen 66 STELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESD-SLNVLEKTLRCLRTIFETSKYQD---KKMSLHLKSI 141 (678)
T ss_pred chhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcc-hHhHHHHHHHHHHHHHhcccccc---cchhhhHHHH
Confidence 3444456666777666655555555554 33455666776554 57889999999999988522222 1222344556
Q ss_pred HHHHHHhhc-CCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHc-CC--C---cchHHHHHHHHHhhCCCCHHHHH
Q 002465 323 FAILMSMLL-DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-GG--N---TIVPVASEQLPAYLAAPEWQKHH 395 (919)
Q Consensus 323 i~~l~~~l~-~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~-~~--~---~~~~~l~~~l~~~l~~~~~~~r~ 395 (919)
++.+...+. ..+..+. + ...++.+. +. + .....+.+.+.-++..-+...|.
T Consensus 142 i~~~s~l~s~~lk~~~~----------------l------~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rl 199 (678)
T KOG1293|consen 142 IVKFSLLYSIELKYISR----------------L------DVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRL 199 (678)
T ss_pred HHHHHHHHhhhhhhhhh----------------h------hhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHH
Confidence 665554444 2111000 0 00000000 00 0 00011222222233344677899
Q ss_pred HHHHHHH---HHHHhcHHHHHHhH-----HHHHH--HHHhhCCCCCHhHHHHHHHHHHHhhhhh
Q 002465 396 AALIALA---QIAEGCAKVMVKNL-----EQVLS--MVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 396 aal~~l~---~i~~~~~~~~~~~l-----~~l~~--~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
+++.+++ .+.-..+..-...+ ..+.+ .+.+.++|+++.-|-.++.|+-.+...-
T Consensus 200 aaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 200 AALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred HHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence 9999988 33322222111111 12233 3444568888888888888888776543
No 187
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.29 E-value=0.046 Score=63.94 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=113.1
Q ss_pred chHHHHHHHHHHHcCCC--cchHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCC
Q 002465 356 SVGQECLDRLAIALGGN--TIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 429 (919)
Q Consensus 356 ~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d 429 (919)
.-|..+|..+++.+|+. ...|.+.+.+...+ .+.+ .-...+..+..++......+.+ +-+.+|.++.++..
T Consensus 751 rgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 751 RGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRS 827 (1549)
T ss_pred hhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhccc
Confidence 44667888999988853 22344444443333 2232 1122233333333333333334 55677888888999
Q ss_pred CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHH-HHHHHHHhcCCCccccCcHHHHHHHH
Q 002465 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA-SAVLNFSENCTPEILTPYLDGIVSKL 508 (919)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~-~al~~l~~~~~~~~l~~~l~~i~~~L 508 (919)
.++.+|++++.|++.+++.... ..+..++..++..+.+ .+.-++..++ ..+..+..... ..+.||.+-++..|
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~-~~~~~~r~~a~e~~~~l~~~l~-~~l~~~~~Llv~pl 901 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGD-LDKFVRRQGADELIELLDAVLM-VGLVPYNPLLVVPL 901 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccc-hhhHhhhhhHHHHHHHHHHhhc-ccccccceeehhhh
Confidence 9999999999999999876543 3344556666666666 4445554444 44444555444 45779999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 509 LVLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 509 ~~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
+..+.+....+|..+-.+++.++...+
T Consensus 902 lr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 902 LRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hcccccchHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999986644
No 188
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.27 E-value=0.042 Score=50.73 Aligned_cols=146 Identities=15% Similarity=0.295 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhCC-CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC
Q 002465 416 LEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 416 l~~l~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~ 494 (919)
.+++++.++..++ +.++.+|..++++||.+.. +.| |....+ .....+ .........+.-...+.....+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP-----~~~k~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 77 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDP-----YKHKSI---QKSLDS-KSSENSNDESTDISLPMMGISP 77 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCc-----HHHhcc---cccCCc-cccccccccchhhHHhhccCCC
Confidence 4677777777774 4579999999999999874 222 211111 111111 0000000000011112122221
Q ss_pred ccccCcHH-HHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHH
Q 002465 495 EILTPYLD-GIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (919)
Q Consensus 495 ~~l~~~l~-~i~~~L~~~l~~~~-~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l 572 (919)
....|++ -.+..|+..++++. ...+..++.++..+....+....+|+++++|.+...+.++.+ .+|+..+.-+
T Consensus 78 -~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~----~~~e~~~~qL 152 (160)
T PF11865_consen 78 -SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD----SLREFYFQQL 152 (160)
T ss_pred -chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH----HHHHHHHHHH
Confidence 1234444 45788889888876 455667889999888888888899999999999999976543 3455455555
Q ss_pred HHHH
Q 002465 573 SLVG 576 (919)
Q Consensus 573 ~~l~ 576 (919)
+.+.
T Consensus 153 ~~lv 156 (160)
T PF11865_consen 153 ADLV 156 (160)
T ss_pred HHHH
Confidence 5543
No 189
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.26 E-value=0.39 Score=52.30 Aligned_cols=240 Identities=12% Similarity=0.121 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---HHHHHHHHHHc----cCCCHHHHHHHHHHHHHhhccCCCCc
Q 002465 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---SLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (919)
Q Consensus 20 d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~---~~~~~l~~il~----~~~~~~~R~~a~i~L~~~i~~~~~~~ 92 (919)
|..-+.+++..+.|+|+..|......|-.+..+.+. .....+..++. .......-.-..-++...+...
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 456788889999999999999999988875543332 11222223322 2222222222334445555431
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002465 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (919)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (919)
-..+.++.+..+...++-..+...-.....++..++..+...+.. --..++..++..--..++.....-+.-+..+++
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 225778888888888888877655556678888888888875421 222333333333333455444556777788877
Q ss_pred hhh-hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH--HHhhcCcchhhHHhhhHHHHHHHHHHHHh-cCChHHH
Q 002465 173 YIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATA 248 (919)
Q Consensus 173 ~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~p~il~~l~~~l~-~~~~~~~ 248 (919)
.++ ..+......++..+..+++++ +..|-..|+..+.+- +..+ .+.-...+|.++..+....+ +=+..++
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li-----~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI-----SQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH-----HCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 665 456667888999999999998 888888887665421 2222 11123455666666554332 2256789
Q ss_pred HHHHHHHHHHHccCcHHHHHhHH
Q 002465 249 QEALELLIELAGTEPRFLRRQLV 271 (919)
Q Consensus 249 ~~a~~~l~~l~~~~~~~~~~~~~ 271 (919)
..+..++..+.+..+..+.....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999999988887766443
No 190
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.19 E-value=0.71 Score=48.40 Aligned_cols=190 Identities=13% Similarity=0.170 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHH-HHhhcCCcccchhhh-HHHHHHHHHHhhhChhhhhhhHHHHHHHH
Q 002465 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLRA-KSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (919)
Q Consensus 518 ~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~-~l~~~~~~~~~~lr~-~ai~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (919)
.+|+..+..+.+.+....+. ......++|.+.+ ++.+..+ .....|. .++.+++.+...+| +.+.++++.+++.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~-~~p~~r~~evL~l~~~ii~kl~-~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQN-SVPDAREPEVLSLMATIINKLG-ELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHH-S-GGGS-HHHHHHHHHHHHHHG-GGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhc-CCccccChhHHHHHHHHHHHHH-HhhhhhHHHHHHHH
Confidence 56788888888888776632 1133444555444 3332211 1222332 46888899988888 45667777776655
Q ss_pred HH----HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchh
Q 002465 596 MS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (919)
Q Consensus 596 ~~----l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (919)
.+ +.+...+.-...|......+..+...+-..+..+=+..+..++.++..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~w-------------------------- 172 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVW-------------------------- 172 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH--------------------------
Confidence 54 555444332236677777777777765444433323333333333210
Q ss_pred ccCCeeeeeechhHHHHHHHHHHHHHHHHHhcc-------cc-cccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHH
Q 002465 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKE-------GF-FPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (919)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~-------~~-~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 743 (919)
+++...-+-...++.++..++..... .| ..|.-.++..+...+.|..|...=+.-+..|..++..
T Consensus 173 -------g~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 173 -------GFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp -------HHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred -------HhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 01111111234577788888777654 22 2355556666666666655543333333555555544
No 191
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.16 Score=52.60 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=111.9
Q ss_pred HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcH
Q 002465 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (919)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l 501 (919)
-++..+++-+..||..|+.-+-.+....+... ......+++.+...+.| .+..||.....++..++....++.+.|++
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 34456789999999999999999888744444 55778889999998888 78999999999999988877767788999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 502 ~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
.-+++.+...+....+.+|..++..+..++..+++.|..+...+++.+...+..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887777777777766543
No 192
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.99 E-value=0.31 Score=54.36 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=93.0
Q ss_pred HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
.....++|.|...++|.+..++..++..+..+++.+.- ...-+.++|.+.+..-...+..|+..+..|+..+++.++
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999988763 234567888887753332778999999999999998776
Q ss_pred CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHH
Q 002465 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 494 ~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l 553 (919)
... .+ +.+..+.+..+..++.+....+.+...++........-..+.++|.+..+.
T Consensus 462 ~~~---v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 462 KAA---VL-DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHH---hH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 432 23 333445556666777777777776666654433211123356677766654
No 193
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.96 E-value=0.058 Score=45.41 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred HHHHhHHHHHHHHHhhCCCCC----HhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHH
Q 002465 411 VMVKNLEQVLSMVLNSFRDPH----PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (919)
Q Consensus 411 ~~~~~l~~l~~~l~~~l~d~~----~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~ 486 (919)
.+.+++=.++..+-..+.|.+ ..-|..++.+++.+.+..++.+ ..+.++++..|...+.. +..|..|+.+..
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 344555566666666677665 2348899999999999888777 77888888888888876 679999999999
Q ss_pred HHHhcCCCccccCcHHHHHHHHHHH
Q 002465 487 NFSENCTPEILTPYLDGIVSKLLVL 511 (919)
Q Consensus 487 ~l~~~~~~~~l~~~l~~i~~~L~~~ 511 (919)
.|+..++.+.+.|.++.++..+.+.
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9999998766666666666655554
No 194
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.96 E-value=0.077 Score=45.08 Aligned_cols=98 Identities=23% Similarity=0.309 Sum_probs=74.7
Q ss_pred HHHhHHHHHHHHHhhCCC----CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHH
Q 002465 412 MVKNLEQVLSMVLNSFRD----PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (919)
Q Consensus 412 ~~~~l~~l~~~l~~~l~d----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~ 487 (919)
+.+++=.++..+-..+.| ....-|..++.+++.+.+..++.+ ..+.++++..|...+.. +.++..|+.+...
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~~ 80 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHHH
Confidence 334444455555555555 455678899999999999666666 67788888888888776 4899999999999
Q ss_pred HHhcCCCccccCcHHHHHHHHHHHhh
Q 002465 488 FSENCTPEILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 488 l~~~~~~~~l~~~l~~i~~~L~~~l~ 513 (919)
|+..++.+.+.|+++.++-.+++.++
T Consensus 81 fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888888888877776543
No 195
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.95 E-value=3.4 Score=46.95 Aligned_cols=340 Identities=15% Similarity=0.189 Sum_probs=176.1
Q ss_pred cchh-HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHH--HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhc
Q 002465 141 WPEL-LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL--HAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (919)
Q Consensus 141 w~~l-l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (919)
|.+. +|..+.++.++++..+..|-.-+..+|..-. .......++ ++.++..|.++ +.+|+..|+.+|.+++-.-.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 6443 6788888888888777777766776665422 121122222 45667778887 99999999999999985432
Q ss_pred CcchhhHH--hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH-hHHHHHHHHHHhh-------cCCCc-
Q 002465 218 SSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR-QLVDVVGSMLQIA-------EAESL- 286 (919)
Q Consensus 218 ~~~~~~~~--~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~li~~ll~~~-------~~~~~- 286 (919)
...+.-.. ..=+|.++..+.+ ..|.++++.+-..|..+.+. +.+.. .+..-+..+...+ .+.+.
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcc
Confidence 21111111 2235666666654 35778888888888888665 22221 1222222222211 11111
Q ss_pred ----ChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCC-CCc------------ccccCCC-----
Q 002465 287 ----EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE-DDP------------LWHSAET----- 344 (919)
Q Consensus 287 ----~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~-~~~------------~w~~~~~----- 344 (919)
+.++-..+..+|..+......+-..++.....+..++..+-..+.... |+. .+....+
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~ 462 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKY 462 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhh
Confidence 234444555666555442111111122333344444333332222111 100 0000000
Q ss_pred ----CCcc--ccCCcccchHHHHHHHHHHH---------cCCC---------cchHHHHHHHHHhh-CCCCHHHHHHHHH
Q 002465 345 ----EDED--AGESSNYSVGQECLDRLAIA---------LGGN---------TIVPVASEQLPAYL-AAPEWQKHHAALI 399 (919)
Q Consensus 345 ----~~ed--~~~~~~~~~a~~~l~~l~~~---------~~~~---------~~~~~l~~~l~~~l-~~~~~~~r~aal~ 399 (919)
..-+ .....+.. ...|+..-... ++.. ..-|.++.....++ .+.+...-+++.-
T Consensus 463 ~~~~~~~~~~~~~~~~~~-~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 463 RQVLANIARLPGVGPPAE-SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhHhhcccccccCCCccc-ccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 0000 00000000 00011111111 1111 12233443323333 3556777777777
Q ss_pred HHHHHHHhcH---HHHHHhH---HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC
Q 002465 400 ALAQIAEGCA---KVMVKNL---EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (919)
Q Consensus 400 ~l~~i~~~~~---~~~~~~l---~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~ 473 (919)
+|..+..+.. ..+...+ +..+|.++..+..++..|..+++-+|.+++.+.... ...-...++.|+..|.+..
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk--~ligk~a~~~lv~~Lp~~~ 619 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK--ELIGKYAIPDLVRCLPGSG 619 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh--hhhhcchHHHHHHhCcCCC
Confidence 7777765533 2222222 346788899999999999999999999999765432 2344678899999888743
Q ss_pred C-----hHHHHHHHHHHHHHHh
Q 002465 474 N-----PRVQAHAASAVLNFSE 490 (919)
Q Consensus 474 ~-----~~v~~~a~~al~~l~~ 490 (919)
. ..+-..+|..|.+++.
T Consensus 620 ~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 620 PSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred CCcCchHHHHHHHHHhHHHHHH
Confidence 3 4566788888888873
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=4.1 Score=46.21 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=109.7
Q ss_pred chhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHHhhc--
Q 002465 142 PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLT-- 217 (919)
Q Consensus 142 ~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~-- 217 (919)
.+-++.|..-..+. =...|..|++.|..+++.....+ ...=++.+++.|+.. .++++-..++.++..++..-+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~V---ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEV---GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH---HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34555555544443 35678899999999988765442 222334444444433 578888899999888886542
Q ss_pred ----CcchhhHHhhhH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH---HHHHHHHHhhcC
Q 002465 218 ----SSADRDRFQDLL-------PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV---DVVGSMLQIAEA 283 (919)
Q Consensus 218 ----~~~~~~~~~~~~-------p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~li~~ll~~~~~ 283 (919)
++.....+...+ +..+..+...+...+..+|..+++.|..+....|..+...+. .-+..++.++.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~- 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR- 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-
Confidence 111111222111 123334445555678999999999999999998877665442 33445555553
Q ss_pred CCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhc
Q 002465 284 ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (919)
Q Consensus 284 ~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~ 331 (919)
|..+-+|..++-+|..+++. .+..-+. -.++.++..|+..+.
T Consensus 177 -DsrE~IRNe~iLlL~eL~k~---n~~IQKl--VAFENaFerLfsIIe 218 (970)
T KOG0946|consen 177 -DSREPIRNEAILLLSELVKD---NSSIQKL--VAFENAFERLFSIIE 218 (970)
T ss_pred -hhhhhhchhHHHHHHHHHcc---CchHHHH--HHHHHHHHHHHHHHH
Confidence 33467899999999999883 3322111 134566666666653
No 197
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.84 Score=50.53 Aligned_cols=216 Identities=11% Similarity=0.154 Sum_probs=125.7
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHhcc-cCCC---
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNI-LPEN--- 139 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e----~~~~vr~~~~~~i~~i~~~~-~~~~--- 139 (919)
.+......++.++++. |+.-+-+..+.|-+-.++.+... +...+...+-++++.++..- ..++
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4566677778777765 76554445555555555444321 23334444445555555432 1111
Q ss_pred -CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc-----cccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 002465 140 -GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (919)
Q Consensus 140 -~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (919)
-+.-+-|.+.+.++..+..+|..|..++-.+..-.++.. ...++.=+..+...|.|+ -+.||..|+.-+..+.
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 122334777888899999999999988877655433332 123344455678888998 8999988876665554
Q ss_pred H----hhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChh
Q 002465 214 Q----CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEG 289 (919)
Q Consensus 214 ~----~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~ 289 (919)
. .+| ...+..++..+... ...+...++|...++.|..++.+... -+.+..+++.+-..+ .|..+.
T Consensus 249 s~fWe~iP----~~i~~~ll~kI~d~---~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l--~D~se~ 317 (1005)
T KOG1949|consen 249 SKFWEMIP----PTILIDLLKKITDE---LAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSL--HDNSEK 317 (1005)
T ss_pred HHHHHHcC----HHHHHHHHHHHHHH---hhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhh--hccchh
Confidence 3 232 12222333333332 23355668999999999988865322 122333344332223 245688
Q ss_pred HHHHHHHHHHHHHhh
Q 002465 290 TRHLAIEFVITLAEA 304 (919)
Q Consensus 290 vr~~al~~l~~l~~~ 304 (919)
||..+...+..+-.+
T Consensus 318 VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 318 VRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999998888877654
No 198
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.79 E-value=0.19 Score=51.74 Aligned_cols=146 Identities=12% Similarity=0.194 Sum_probs=100.6
Q ss_pred CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc----c--ccHHHHHHHHHHhhC--------CCCChHHHHH
Q 002465 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL----T--PHLKHLHAVFLNCLT--------NSNNPDVKIA 204 (919)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~----~--~~~~~l~~~l~~~l~--------~~~~~~vr~~ 204 (919)
..|+-++|.++.++.+.++..|..|+.++..+.+.++... . ...+.+.+.+..++. ++ +..+-..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ 193 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQA 193 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHH
Confidence 5899999999999999999999999999999998765432 1 123444555555655 33 6677788
Q ss_pred HHHHHHHHHHhhcCcch---hhHHhhhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHh
Q 002465 205 ALNAVINFIQCLTSSAD---RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (919)
Q Consensus 205 a~~~l~~l~~~~~~~~~---~~~~~~~~-p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~ 280 (919)
|..|+..++........ ...+...+ ..+++.+....+...+..+...++.+..++...+.....|++.++..+.+.
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88999888775422111 11122221 123333322222224778888888899888888888889999999999888
Q ss_pred hcCCC
Q 002465 281 AEAES 285 (919)
Q Consensus 281 ~~~~~ 285 (919)
+.++.
T Consensus 274 l~npf 278 (282)
T PF10521_consen 274 LENPF 278 (282)
T ss_pred hcCCC
Confidence 87653
No 199
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=7.9 Score=47.83 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHH
Q 002465 360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (919)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 439 (919)
+.+-.+-...+ ..+-.++|.+..-+.+.+-.+|.-|...+|.+.......+....+.+....+..+.|.++.||..+.
T Consensus 244 e~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v 321 (1266)
T KOG1525|consen 244 ELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECV 321 (1266)
T ss_pred HHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHH
Confidence 34444433332 4555678888888889999999999999999888766655566788889999999999999999988
Q ss_pred HHHHHhhhhhch----------------------------------hHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHH
Q 002465 440 NAIGQLSTDLGP----------------------------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (919)
Q Consensus 440 ~~L~~l~~~~~~----------------------------------~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al 485 (919)
.+..+..-..+. .+.-.+.+.++..+...+.| ..+.||..|+..|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~L 400 (1266)
T KOG1525|consen 322 ESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNGL 400 (1266)
T ss_pred HHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 776654432211 00012344477777788888 8899999999999
Q ss_pred HHHHhc--C----CCccccCcHHHHHHHHHHHhhcCChhHH
Q 002465 486 LNFSEN--C----TPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (919)
Q Consensus 486 ~~l~~~--~----~~~~l~~~l~~i~~~L~~~l~~~~~~v~ 520 (919)
..+.++ + +...+.+-+..|-..|+.++...+...|
T Consensus 401 aqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 401 AQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 998875 1 2233445555566677777665554444
No 200
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.25 Score=50.56 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhccc-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHh--hhHH
Q 002465 154 SDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLP 230 (919)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~p 230 (919)
+.+...++.|+.-|..+++.+.....= .+.-+.+++ ..++++ +..+|..|+..++.+++.-+. ..+.+- ..++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll-~~l~~~-~~~lR~~Aa~Vigt~~qNNP~--~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL-GYLENS-DAELRELAARVIGTAVQNNPK--SQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH-HHhcCC-cHHHHHHHHHHHHHHHhcCHH--HHHHHHHcccHH
Confidence 456788999999999999887643111 122333444 488887 999999999999999986432 111111 2233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 231 ~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
.++..+. .+.+..+|..|+-++..++.+.+.....++. .=...+..++..++.+...+..++.++..+...
T Consensus 170 ~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 170 KLLKILS---SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 4444333 3456667899999999999888765444332 113344455555556777788888888888773
No 201
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.21 Score=49.65 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCCcchHH---HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhH
Q 002465 358 GQECLDRLAIALGGNTIVPV---ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (919)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~v 434 (919)
+...+.+++..-+ +.+.+. ++-.+.+-+++..-.+-.+|+.+++.+.....+.+...++.++..++..-.+.+..|
T Consensus 108 gLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 108 GLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4456666665543 444333 333344556677778889999999999998888777778888888877777889999
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
|..|-.+|..+..+..|. .+++.|...++. .++++|..++.++.+....++
T Consensus 187 reda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 187 REDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 999999999999877663 355666666777 789999999999888877665
No 202
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.63 E-value=4.1 Score=43.97 Aligned_cols=316 Identities=12% Similarity=0.100 Sum_probs=158.1
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHccCc--HHHHH
Q 002465 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------GNEATAQEALELLIELAGTEP--RFLRR 268 (919)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~-------~~~~~~~~a~~~l~~l~~~~~--~~~~~ 268 (919)
+..-|..|...|...+....+..........++.+++.+..-+.. .+.....+|+++|+-+..... ..+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 556678888888887776655555667777788888877765554 355677888998887764321 11111
Q ss_pred -hHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 002465 269 -QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (919)
Q Consensus 269 -~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~e 347 (919)
....++...+..+.++..+..+....+.++..- ...+... .......++..+.
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q----~f~~~~~--~~~~~~~l~~~l~-------------------- 139 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ----KFSPKIM--TSDRVERLLAALH-------------------- 139 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCCCccc--chhhHHHHHHHHH--------------------
Confidence 111244555555544444444433333222210 0011000 0011111111111
Q ss_pred cccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC
Q 002465 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (919)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l 427 (919)
.+-+.+++. .+-...+.++..+....+..+..+...=++.++..+
T Consensus 140 ----------------~i~~~~~s~-------------------si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l 184 (372)
T PF12231_consen 140 ----------------NIKNRFPSK-------------------SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL 184 (372)
T ss_pred ----------------HhhccCCch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 112223334444445555555555555555666666
Q ss_pred CCCCHhHHHHHHHHHHHhhhhhchhHH---------------hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 428 RDPHPRVRWAAINAIGQLSTDLGPDLQ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~~~~~~~~~---------------~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
-+....+|..|..++..+...+++... ..+.+.+.+.+...+.+..+....-..-.++..++..-
T Consensus 185 ~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 185 LSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 666777888776666666555544210 01222233334444444112222223333444444321
Q ss_pred CCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH---HHHhHhhhhHHHHHHHhhcCCccc-chhhhHH
Q 002465 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKYYDAVMPFLKAILVNATDKSN-RMLRAKS 568 (919)
Q Consensus 493 ~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~---~~~~~~~i~~~l~~~l~~~~~~~~-~~lr~~a 568 (919)
. -.--+++...+.....+++++++.+|..|+.+-..++.....+ ....+..++.++...++....... ..++..+
T Consensus 265 ~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~l 343 (372)
T PF12231_consen 265 R-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYL 343 (372)
T ss_pred h-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHH
Confidence 1 1123678888888888899999999999999999998855432 223444455444444433222111 1445555
Q ss_pred HHHHHHH
Q 002465 569 MECISLV 575 (919)
Q Consensus 569 i~~l~~l 575 (919)
+.+++.+
T Consensus 344 l~~l~~l 350 (372)
T PF12231_consen 344 LYSLCNL 350 (372)
T ss_pred HHHHhch
Confidence 5555443
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.69 Score=53.62 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=96.1
Q ss_pred HhHHHHHHHHHHHHHhcccCCCC----cchhHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhh-ccccHHHHHHHHHH
Q 002465 118 KSISKKLCDTVSELASNILPENG----WPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLN 191 (919)
Q Consensus 118 ~~vr~~~~~~i~~i~~~~~~~~~----w~~ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~ 191 (919)
+.-|..++-+++.+.+. ++.++ -.+++...+..+.++ .+-.|+-.+.|||.+-+..... +.-.-......+..
T Consensus 571 ~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 46788889999999886 45443 257888888888885 7899999999999998765432 21122345566667
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhhcCcc--hh-------------hHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002465 192 CLTNSNNPDVKIAALNAVINFIQCLTSSA--DR-------------DRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (919)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~-------------~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~ 256 (919)
.|.|+ .++||.+|+-+|+.++....+.. .. .....+++..+..+...+++..+-+|.+....|.
T Consensus 650 ~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 78887 99999999999999998531110 00 1112233333334455566677777777666666
Q ss_pred HHHccCc
Q 002465 257 ELAGTEP 263 (919)
Q Consensus 257 ~l~~~~~ 263 (919)
.++..+.
T Consensus 729 ~~~~g~~ 735 (1387)
T KOG1517|consen 729 HFVVGYV 735 (1387)
T ss_pred HHHHhhH
Confidence 6655443
No 204
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.52 E-value=0.21 Score=52.48 Aligned_cols=229 Identities=18% Similarity=0.192 Sum_probs=117.7
Q ss_pred CchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhhccCCCCcccCC---CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHH
Q 002465 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (919)
Q Consensus 53 ~p~~~~~~l~~il~~~-~~~~~R~~a~i~L~~~i~~~~~~~w~~l---~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i 128 (919)
+.+.+...++.++.+. .++.+.++...++-.++...+ .....+ ........-..+++.+.+ ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 4445666777777765 899999999999999887752 111111 111111133566675555 6999999999999
Q ss_pred HHHHhcccCCCCcc---hhHHHHHHhhcC----CChhHHHHHHHHHHHhhhhh--hhhccccHHHHHHHHHHhh------
Q 002465 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCL------ 193 (919)
Q Consensus 129 ~~i~~~~~~~~~w~---~ll~~l~~~~~s----~~~~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l------ 193 (919)
+.++..... ..-. +.++.+++.+++ ++......++.++..+...- ...+.. ...++.+...+
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999986433 2333 677777777765 33455688889998887542 112211 44555555555
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCcchhhHH--hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH-hH
Q 002465 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR-QL 270 (919)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~ 270 (919)
.+..+.++...++-|+-.+. +... ..+.+ ..++|.+++++.. ...+.+..-++.+|..+++..+..+.+ .+
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLS--F~~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv 280 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLS--FEPE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPKSNIELMV 280 (312)
T ss_dssp ----HHHHHHHHHHHHHHHT--TSHH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHh--cCHH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22234556666666654332 2111 11111 2266777777765 346788888899999999877653222 22
Q ss_pred H-HHHHHHHHhhcCCCcChhHHH
Q 002465 271 V-DVVGSMLQIAEAESLEEGTRH 292 (919)
Q Consensus 271 ~-~li~~ll~~~~~~~~~~~vr~ 292 (919)
. .+.+.+-.+...+-.|+++..
T Consensus 281 ~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 281 LCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HH-HHHHHHHHHSS--SSHHHHH
T ss_pred HccHHHHHHHHhcCCCCCHHHHH
Confidence 2 333333333333334555543
No 205
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.50 E-value=3.3 Score=42.73 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=78.8
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002465 409 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (919)
Q Consensus 409 ~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l 488 (919)
+..+.+.++.++..+++++.|++..+...+...+..+....+.. .|+..++-.++ . ++.+|..|...+..-
T Consensus 129 ~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii----~--sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 129 GPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII----T--SPSRRLGALNYLLRR 199 (307)
T ss_pred cHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh----c--CcchhHHHHHHHHHh
Confidence 33456778889999999999999999999999999999887763 24444444443 3 688888888777665
Q ss_pred HhcCC-----------CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 002465 489 SENCT-----------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (919)
Q Consensus 489 ~~~~~-----------~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~ 529 (919)
..... ...+.+.-.-++..+...+++.+.-|++.++..+-.
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 54433 112334455567888888888887788777665543
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.45 E-value=5.1 Score=43.82 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHH
Q 002465 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll 278 (919)
..-...-+.-+..+++.+ ....+....+.+++.+..++++.+..+...|+..+..-. ....+..+...+++.++
T Consensus 269 s~Kev~FL~el~~il~~~----~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~--~~~li~~~~~~i~p~i~ 342 (409)
T PF01603_consen 269 SQKEVLFLNELEEILEVL----PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEY--FLSLISQNSRVILPIIF 342 (409)
T ss_dssp HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH--HHHHHHCTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH--HHHHHHhChHHHHHHHH
Confidence 333344445555555544 345678888899999999999999999999987664210 01222333444555555
Q ss_pred Hhh---cCCCcChhHHHHHHHHHHHHHh
Q 002465 279 QIA---EAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 279 ~~~---~~~~~~~~vr~~al~~l~~l~~ 303 (919)
..+ ...+.+..+|..|..++..+.+
T Consensus 343 ~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 343 PALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 543 2347789999999999988888
No 207
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.36 E-value=2.9 Score=46.47 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH------HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchh
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~------~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (919)
+..+.+++.+.....|.+.+..++.+.+.... .+.+.+..++..+.+.+.|.+|.+|.-|+..+..++.--...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45667788999999999999999999886543 233467788899999999999999999999999888643222
Q ss_pred HHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhc
Q 002465 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 453 ~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~ 491 (919)
..--..+...+...++| ....||..|...++.++-.
T Consensus 381 --~~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 --VGRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred --cchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhc
Confidence 23456788888999999 8899999999999887743
No 208
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=11 Score=46.64 Aligned_cols=175 Identities=9% Similarity=0.111 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhH
Q 002465 357 VGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRV 434 (919)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~v 434 (919)
.+.-+.+.++....+....+.++..+.... .+.+|++|.+.+..+..+.-...- ......++|-..+...+.|....|
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~v 1585 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEV 1585 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHH
Confidence 344455555555554677777887777543 456899999998888765432211 233556678888888899998899
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHH-HHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhh
Q 002465 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV-QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v-~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~ 513 (919)
|..|..+|+-+...-.-. ..++.-.......+......+ ...|..+|+.++-.++. .+..+++..+..+.....
T Consensus 1586 re~Aa~~Lsgl~~~s~~~----~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1586 REEAAKCLSGLLQGSKFQ----FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-VVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHhccccc----cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-cchhhhHHHHHHHHhhcC
Confidence 999999998877543211 122222222222322122333 45677788888888773 344566766666655544
Q ss_pred cCChhHHHHHHHHHHHHHHhhHHH
Q 002465 514 NGKQMVQEGALTALASVADSSQEH 537 (919)
Q Consensus 514 ~~~~~v~~~~l~al~~l~~~~~~~ 537 (919)
++ ..++..+-.+++..-....+.
T Consensus 1661 e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhhhh
Confidence 44 556666666666555444433
No 209
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=6.6 Score=44.08 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh--cccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhh
Q 002465 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS--NILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (919)
Q Consensus 96 l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~--~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~ 173 (919)
...+..+.+...++++..+ ++..||...+++++.+.. ...++..++.+...+..-+.+..+.+|..|+.+|..+=..
T Consensus 78 ~e~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred chhhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 3455778888888888876 799999999999999887 3445456677777888888888999999999999887643
Q ss_pred hhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHH-------HHHhhcCcc---hhhHHhhhHH----------HHH
Q 002465 174 IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN-------FIQCLTSSA---DRDRFQDLLP----------LMM 233 (919)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~-------l~~~~~~~~---~~~~~~~~~p----------~il 233 (919)
-.+.=.+ +...+...+++.++++||.+|+.++.. +++...+.. -+-.|...+| ..+
T Consensus 157 ~~dee~~----v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv 232 (892)
T KOG2025|consen 157 PKDEECP----VVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRV 232 (892)
T ss_pred CCCCccc----HHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 2222112 333344444444499999999877642 222111100 0111222223 233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHh
Q 002465 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 234 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
..+...+++.+..++.++...+.. .|+...-..+++.+-. +.. +...+++..+++.+...+.
T Consensus 233 ~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgni~ElL~~-ldv-snss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 233 LLLEWGLNDREFSVKGALVDAILS------GWLRFSDGNILELLER-LDV-SNSSEVAVKALEALFSGVR 294 (892)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHH------HHhhhccccHHHHHHH-hcc-ccchHHHHHHHHHHHHHHH
Confidence 445556666666666655554432 1111111122332222 221 3356788888888877544
No 210
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.25 E-value=3 Score=43.80 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHH----HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch-------hHHhhhh
Q 002465 390 EWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH 458 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~~~~~----~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-------~~~~~~~ 458 (919)
-+..|..-...+..+.+.|...+. ..+..++..+.-++++++..|...++.++..+.+.+.. .+...|+
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 489999999999999998765432 45778889999999999999999999999988886654 2334566
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 459 ~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
-.++..++..+.|......-..-+..|..++.
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 67777777777773334333444566666653
No 211
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.24 E-value=0.29 Score=40.00 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=67.1
Q ss_pred hHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHH
Q 002465 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (919)
Q Consensus 461 ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~ 540 (919)
.+...++.+.| +.+.+|.++...|..+++.-. ......+.++..++..++++++.+--.++.+++.++...+.
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 45566778888 889999999999999998765 12356889999999999999999999999999999987774
Q ss_pred hHhhhhHHHHHHH
Q 002465 541 YYDAVMPFLKAIL 553 (919)
Q Consensus 541 ~~~~i~~~l~~~l 553 (919)
.++|.|.+.+
T Consensus 77 ---~vl~~L~~~y 86 (92)
T PF10363_consen 77 ---EVLPILLDEY 86 (92)
T ss_pred ---HHHHHHHHHH
Confidence 3455555554
No 212
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.09 E-value=1.7 Score=48.91 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=72.8
Q ss_pred CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCc
Q 002465 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (919)
.-..++|.|...+.+.+....+.++..+..+++.++-.+ .-..++|.+.+......+..|+..++-|+..+++.++
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--
Confidence 345677888888888888888888888888888776332 2345667666554444478888888888888886653
Q ss_pred chhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC
Q 002465 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (919)
Q Consensus 220 ~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (919)
.- ..++.++ .+..+.+..++.+....+.+...++-..
T Consensus 462 --~~---~v~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 462 --KA---AVLDELL-PILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred --HH---HhHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 11 1222222 2333455567777777766666555433
No 213
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=5.9 Score=48.69 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=50.4
Q ss_pred cchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccch
Q 002465 561 NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (919)
Q Consensus 561 ~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l 632 (919)
....|-.|+-.+..+...+| +.+.+.++++++++.++..+ .++.+...+-..+..+-..+|+.|..|+
T Consensus 1554 ~~~~r~~ai~~~~~l~~~lg-e~~~~lL~q~iPfLaEL~ED---~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1554 SRKARYLAIIQVKLLYTKLG-ENVIVLLPQSIPFLAELMED---EDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred cHHHHHHHHHHHHHHHHHhc-chhHHhhhhhhHHHHHHHhh---hHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 34456667878888888888 77889999999999998762 3445555566667777778888777663
No 214
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.93 E-value=0.45 Score=52.99 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 002465 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (919)
Q Consensus 269 ~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed 348 (919)
|-..+++.++++.+ ..+..+|..-+..+...+++ .. -+.+-.+++|.+...+.+.+
T Consensus 327 yq~~i~p~l~kLF~--~~Dr~iR~~LL~~i~~~i~~---Lt-----~~~~~d~I~phv~~G~~DTn-------------- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFK--SPDRQIRLLLLQYIEKYIDH---LT-----KQILNDQIFPHVALGFLDTN-------------- 382 (690)
T ss_pred cccchhhhHHHHhc--CcchHHHHHHHHhHHHHhhh---cC-----HHhhcchhHHHHHhhcccCC--------------
Confidence 44456677777765 34788998888777777773 11 01244678888887776553
Q ss_pred ccCCcccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHH-HHHHhhC
Q 002465 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL-SMVLNSF 427 (919)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~-~~l~~~l 427 (919)
...+.....++..++..++.+.+-..++.++...-.|.+...|.-...++|.++....... ...++ ......+
T Consensus 383 ---~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftral 456 (690)
T KOG1243|consen 383 ---ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRAL 456 (690)
T ss_pred ---HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhh
Confidence 2345556677777777787665666677777777667788889888888988877643211 22332 3344468
Q ss_pred CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 428 ~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
+|+-+--|.++.+.+....+.+.. .....+++|.+.-...| ++..||..|..++..+.+...
T Consensus 457 kdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd-~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 457 KDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVD-PEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccC-cccchhhHHHHHHHHHHhhhh
Confidence 898888899999988877766654 56778999999998888 889999999999999987765
No 215
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.86 E-value=1.1 Score=48.62 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCC--HH
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS--LH 99 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~--~~ 99 (919)
...+++...+..-...|+.-....+-..+. -..+|+..+-.+|.-..++.+----.-+|++.+... ..+.+ .+
T Consensus 12 s~~~if~k~Q~s~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~----~~~dpeg~~ 87 (885)
T COG5218 12 SMQLIFNKIQQSSAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYD----MPDDPEGEE 87 (885)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhc----CCCChhhhH
Confidence 344555555555445555544433222111 112344444445542222222112233455555432 22222 34
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~--~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (919)
..+.+...++.++.+ ++..||...+++++.+.....+ +.-++.|+..+..-+-+..+.+|..|+.+|..+-+...+.
T Consensus 88 ~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 88 LVAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 566666778888876 7999999999999998875433 2345566677777777778899999999988765443222
Q ss_pred ccccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002465 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (919)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (919)
-+.+..++...+++.++.+||..|+--+
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2234445555555444899999887544
No 216
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.80 E-value=0.21 Score=52.80 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC---------
Q 002465 360 ECLDRLAIALGGNTIVPVASEQLPAYLA--AP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--------- 427 (919)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l--------- 427 (919)
.+|..+...-|-..++|.+..++.+.+. .. ++..-...+..+.++.....-.+.+|+..++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 4566666555556777777777766543 22 56665556666666666554456788888888888765
Q ss_pred -CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChH-HHHHHHHHHHHH
Q 002465 428 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 488 (919)
Q Consensus 428 -~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~-v~~~a~~al~~l 488 (919)
.+.++.+|..|...++.++..++... ....+.++..+.+.+.|+..+. ..-.|...|..|
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34678999999999999999887765 4566778888888887733332 245555555544
No 217
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.80 E-value=6.3 Score=41.43 Aligned_cols=345 Identities=16% Similarity=0.205 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh
Q 002465 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~ 176 (919)
.++....+...+-..|..+ ...+ .++.-.+. ...+..|..+++. +..+++-..+.+..++..++...+.
T Consensus 79 kdd~v~yvL~li~DmLs~d-~sr~-----~lf~~~a~-~~k~~~~~~fl~l----l~r~d~~iv~~~~~Ils~la~~g~~ 147 (442)
T KOG2759|consen 79 KDDTVQYVLTLIDDMLSED-RSRV-----DLFHDYAH-KLKRTEWLSFLNL----LNRQDTFIVEMSFRILSKLACFGNC 147 (442)
T ss_pred hHHHHHHHHHHHHHHHhhC-chHH-----HHHHHHHH-hhhccchHHHHHH----HhcCChHHHHHHHHHHHHHHHhccc
Confidence 4566666665555556543 2111 12222221 2223457655554 4456666666688888888776544
Q ss_pred hccc-cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHh--hhHHHHHHHHHHHHhcCChHHHHHHHH
Q 002465 177 TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLPLMMRTLTESLNNGNEATAQEALE 253 (919)
Q Consensus 177 ~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~p~il~~l~~~l~~~~~~~~~~a~~ 253 (919)
.+.. ..+-....+...+++..+.+.+..+.+||..++..-+ .+..|. .-+..++..+. .+..+....-..+-
T Consensus 148 ~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e---yR~~~v~adg~~~l~~~l~--s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 148 KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE---YRYAFVIADGVSLLIRILA--STKCGFQLQYQSIF 222 (442)
T ss_pred cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc---hhheeeecCcchhhHHHHh--ccCcchhHHHHHHH
Confidence 3332 3445556666666664467788888999988886421 111110 00112222222 12334555566666
Q ss_pred HHHHHHccCcHHHHHhHH--HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhh-hc--chhhHHHHHHHHHH
Q 002465 254 LLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM-RK--LPQFINRLFAILMS 328 (919)
Q Consensus 254 ~l~~l~~~~~~~~~~~~~--~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~-~~--~~~~~~~li~~l~~ 328 (919)
|+..+.- .+.+..++. .+++.+..++.. ...+.|-+.++..+..+++. .|... ++ ..+++..=++..++
T Consensus 223 ciWlLtF--n~~~ae~~~~~~li~~L~~Ivk~-~~KEKV~Rivlai~~Nll~k---~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 223 CIWLLTF--NPHAAEKLKRFDLIQDLSDIVKE-STKEKVTRIVLAIFRNLLDK---GPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHhhc--CHHHHHHHhhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc---CchhhHHHHHHHHHHhcCchHHHH
Confidence 6665542 222334443 466666666654 23455656667777777773 32100 00 01111111222333
Q ss_pred hhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCC-CCH--HHHHHHHHHHHHH
Q 002465 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAA-PEW--QKHHAALIALAQI 404 (919)
Q Consensus 329 ~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~-~~~--~~r~aal~~l~~i 404 (919)
.|... .|. ||| ...-+..+.+.+..+ .-+..+-.+..+..+. =.| ..+...++.
T Consensus 297 ~L~~r----kys-----DED---------L~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~---- 354 (442)
T KOG2759|consen 297 SLEER----KYS-----DED---------LVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR---- 354 (442)
T ss_pred HHHhc----CCC-----cHH---------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH----
Confidence 33222 222 111 011122222222100 0000111111222110 011 111111110
Q ss_pred HHhcHHHHHHhHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHhhhhhchhHH--hhhhhhhHHHHHhhccCCCChHHHHHH
Q 002465 405 AEGCAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQ--NQFHPQVLPALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 405 ~~~~~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~--~~~~~~ll~~l~~~l~d~~~~~v~~~a 481 (919)
+. .+.+.+.--+++..+++.|..+ +|.+-..||.=+|++..+.|.... .+| ..=..+++.++. ++++||-+|
T Consensus 355 -eN-a~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh-~d~~Vry~A 429 (442)
T KOG2759|consen 355 -EN-ADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNH-EDPEVRYHA 429 (442)
T ss_pred -Hh-HHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcC-CCchHHHHH
Confidence 00 0111222235777777777544 588999999999999998765321 122 233466788888 899999999
Q ss_pred HHHHHHHHh
Q 002465 482 ASAVLNFSE 490 (919)
Q Consensus 482 ~~al~~l~~ 490 (919)
..|+..++-
T Consensus 430 LlavQ~lm~ 438 (442)
T KOG2759|consen 430 LLAVQKLMV 438 (442)
T ss_pred HHHHHHHHh
Confidence 999988764
No 218
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.75 E-value=2.9 Score=45.36 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=95.7
Q ss_pred HHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-------CChHHHHHHHHHH
Q 002465 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASAV 485 (919)
Q Consensus 413 ~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-------~~~~v~~~a~~al 485 (919)
.-|+.+|...+. +.++..|..|+.+|.. ..-+.+++|.++..+.+. .+-+.-......+
T Consensus 206 QlYy~~It~a~~----g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~ 271 (576)
T KOG2549|consen 206 QLYYKEITEACT----GSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMV 271 (576)
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHH
Confidence 345566666544 3778889999888765 234456666666655541 1233334444555
Q ss_pred HHHHhcCCCccccCcHHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 486 LNFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~i~~~L~~~l~~----------~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
..++++-. -.+.||+..+++.++.++-. ..+.+|..+...++.++...+.........+...+.+.|.+
T Consensus 272 rSLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 272 RSLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred HHHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 55555543 35789999999999987643 24679999999999999888877666677788888888754
Q ss_pred cCCcccchhhhHHHHHHHHHHh
Q 002465 556 ATDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 556 ~~~~~~~~lr~~ai~~l~~l~~ 577 (919)
.. .....+=.++.++..++.
T Consensus 351 ~~--~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 351 NK--KPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CC--CCchhhhhHHHHHHHhhh
Confidence 32 122233345666666654
No 219
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.67 E-value=3.5 Score=40.40 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=40.2
Q ss_pred HHHHHHHhhCC--CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 418 QVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 418 ~l~~~l~~~l~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
.-++.+...+. +..|.||..|..+||.+. .+.+++.+-+..+| +...|++.+-.|+..+-
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIKD-PCKEVRETCELAIKRLE 128 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhcC-CccccchHHHHHHHHHH
Confidence 34555555554 457888999888888865 22444555565666 77888888777777764
No 220
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=1.3 Score=46.16 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=101.8
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 002465 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (919)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~ 463 (919)
..+.+.+.++|..|+..+-.+....+.....++..+++.+.+...|.+..||......+-.+.....+.-+..+..-+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 34578899999999999998888777767778889999999999999999999999888886666555445778889999
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHh
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l 512 (919)
.+...+.. -.+.+|.-+...+..+++.+++. +..+...+++.....+
T Consensus 145 yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~-~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 145 YISSAMTH-ITPEIQEDSLKFLSLLLERYPDT-FSRYASKILENFKDVI 191 (393)
T ss_pred HHHHHHhh-ccHHHHHhhHHHHHHHHHHcChH-HHHHHHHHHHHHHHHH
Confidence 99999998 88999999999999999998754 3334333444444443
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.60 E-value=4.6 Score=40.24 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHH
Q 002465 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (919)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~---~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~ 110 (919)
.+++.....-..|.++...+- ...+..++++. +.+....+..+..++-++.+.+ ...+ +..+..+....++
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----DRHF-PFLQPLLLLLILR 86 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----chHH-HHHHHHHHHHHhh
Confidence 455666666667777666431 22344444443 3444555556666666654443 1111 2223333322222
Q ss_pred HH---h-hcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhh-cCCChhHHHHHHHHHHHhhhhhhhhccccHHHH
Q 002465 111 SI---Q-LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (919)
Q Consensus 111 ~l---~-~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (919)
.. . .+.........+..+..+.+. .| +.|+++++.+.+++ .+.++..+..++..+..+|+.---++...+..+
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl 164 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVL 164 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 11 1 112333444556677777764 34 39999999999999 677888889999999999965333333344444
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC-cchhhHHhhhHHHHHHHHHHHHhcCChHH
Q 002465 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (919)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~~p~il~~l~~~l~~~~~~~ 247 (919)
.+.+ ..+..+.+ ++.+..++..++. ..+.+.+..+...++..+.+.....+.+.
T Consensus 165 ~~~l----~~~~rp~v----~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~ 219 (234)
T PF12530_consen 165 QKKL----SLDYRPLV----LKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNV 219 (234)
T ss_pred HHhc----CCccchHH----HHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccch
Confidence 4433 33324444 3334444433332 22445566667788888888777665443
No 222
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.41 E-value=2.4 Score=41.87 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=86.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----CChHHHHHHHHHHH
Q 002465 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVL 486 (919)
Q Consensus 412 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-----~~~~v~~~a~~al~ 486 (919)
+.-|++.++..+ +...+...|.+|+.+|.. ..-+.+++|.++..+.+. .+-.+.........
T Consensus 195 Lq~YF~kvisal---~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~ 261 (450)
T COG5095 195 LQMYFDKVISAL---LDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS 261 (450)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334566666654 344577889999887754 223445555555544430 11223233334444
Q ss_pred HHHhcCCCccccCcHHHHHHHHHHHhhc------CC----hhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhc
Q 002465 487 NFSENCTPEILTPYLDGIVSKLLVLLQN------GK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (919)
Q Consensus 487 ~l~~~~~~~~l~~~l~~i~~~L~~~l~~------~~----~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (919)
.++++-. -.+.||+..+++.++.++-. ++ ..+|..|...++-+.+..+......-+.+...+...+-+.
T Consensus 262 sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 262 SLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred HHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhc
Confidence 5555543 34679999999998886521 11 3477778888888777777665555566666666655432
Q ss_pred CCcccchhhhHHHHHHHHHHh
Q 002465 557 TDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 557 ~~~~~~~lr~~ai~~l~~l~~ 577 (919)
+. ...-.-.|+.|++.++.
T Consensus 341 ~k--~~sT~YGalkgls~l~k 359 (450)
T COG5095 341 EK--TESTQYGALKGLSILSK 359 (450)
T ss_pred cc--ccchhhhhhhhhhhhch
Confidence 21 11122346777777654
No 223
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.31 E-value=1 Score=40.61 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 002465 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~ 576 (919)
......+..|.+-+.+.++.++..++..+..++..+|..|...+ ..++..|..++..........+|.++++.+...+
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34577788899999999999999999999999999999886654 4677777777765433333338999999999988
Q ss_pred hhhChhhhhhhHHHHHHHH
Q 002465 577 MAVGKDKFRDDAKQVMEVL 595 (919)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l 595 (919)
..++...-.+++.++++.+
T Consensus 118 ~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 118 EAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp HHTTTSTTGHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHH
Confidence 8775333334444444443
No 224
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.13 E-value=1.1 Score=41.30 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=76.3
Q ss_pred hhhhhhhHHHHHhhccCC-----------------CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCCh
Q 002465 455 NQFHPQVLPALAGAMDDF-----------------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (919)
Q Consensus 455 ~~~~~~ll~~l~~~l~d~-----------------~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~ 517 (919)
.++++.++|.++....-. .--.+|..|..++..+++.+... + .+..+++.+...+.+ +.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cH
Confidence 356678888887654321 23468999999999999988743 3 377778888898988 89
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 518 ~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
.+|..+...+..++...+..+.+.++.+.+.+...+..
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998854
No 225
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.11 E-value=10 Score=41.76 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred CHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-HHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHH
Q 002465 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (919)
Q Consensus 431 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~-~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~ 509 (919)
-.+-|-.|..+||.++..++. .-...++. .+...|++ +...-|..++..+..++.........+..+.+.+.|.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 346688899999999988754 33444444 57778887 6666677888888888877653322222466777777
Q ss_pred HHhhcC
Q 002465 510 VLLQNG 515 (919)
Q Consensus 510 ~~l~~~ 515 (919)
..|.++
T Consensus 175 ~~L~~~ 180 (441)
T PF12054_consen 175 EILENP 180 (441)
T ss_pred HHHcCC
Confidence 777733
No 226
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.94 E-value=7.8 Score=39.02 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCCHH-HHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhh
Q 002465 378 ASEQLPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (919)
Q Consensus 378 l~~~l~~~l~~~~~~-~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (919)
++..+..++++.+.. .-..|+.-++.+.+..++...-... ..=..+...+++++++||..|+.++..+.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 344445555554443 3345777888888877763322211 12245666789999999999998876654
No 227
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=6 Score=48.93 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=137.2
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHH
Q 002465 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (919)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 265 (919)
+..+++-|... ++..|.-|+..++.++... +.+....++|.+.....+++-+.+..+|......+..+.....+.
T Consensus 43 l~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 7889999999999888754 334455578889999999999999999999999999999988899
Q ss_pred HHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc-CCC
Q 002465 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS-AET 344 (919)
Q Consensus 266 ~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~-~~~ 344 (919)
+.||+..+++..+... -+.+..+...|...+...... ++.+..+-. .-..+.+.+...+.....+. ... .-.
T Consensus 118 lsp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~---c~~~i~~~~~~~~~~~~~~s-lSd~~~~ 190 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDGFAE-EKDRHVWFK---CDPEIFYLVTEILVKETPDS-LSDLRTL 190 (1312)
T ss_pred hhHHHHhhhhhhhhee--cccchHHHHHHHHHHHhhcCh-hhhHHHHHH---hhHHHHHHHHHHHhccCccc-cchhhhc
Confidence 9999999998766533 244555655555554443331 011111111 12233333333332211110 000 000
Q ss_pred CCccccCCcccchHHH---HHHHHHHHcCCCc-ch---H-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHH
Q 002465 345 EDEDAGESSNYSVGQE---CLDRLAIALGGNT-IV---P-----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM 412 (919)
Q Consensus 345 ~~ed~~~~~~~~~a~~---~l~~l~~~~~~~~-~~---~-----~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~ 412 (919)
..|+. |....+.-.. ++..+....|... .. + .--+.+-.++++..+.+|.+.+..+..+........
T Consensus 191 s~Ee~-E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 191 SSEEL-ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred chHHH-HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 01111 1112222223 3333333333221 11 1 011233345678888899999999998888776653
Q ss_pred HHh-HHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhc
Q 002465 413 VKN-LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (919)
Q Consensus 413 ~~~-l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~ 450 (919)
.+. ...+-+.+.....+.+ .|......++-.....++
T Consensus 270 ~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p 307 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLP 307 (1312)
T ss_pred chhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhh
Confidence 333 3334444444444444 444444444443333333
No 228
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.72 Score=51.01 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=103.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHh-----cHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH
Q 002465 379 SEQLPAYLAAPEWQKHHAALIALAQIAEG-----CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~i~~~-----~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
-|.+-..++-+|..+|..|+..+-..--- ..+.+...++.-+..+...|.|+-|.||..|..-+.++...+-..+
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 34556677888889998777665443211 1123334555666778888999999999998776665554332222
Q ss_pred HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 454 ~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
....+.+++..++.-+.......||-+....|..++.+-. . .+.+..+++.+-..+.+....||-.+...+..+-
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-S--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc-c--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1344566666666665543677899999999988877643 1 2778888898888999999999988888776654
No 229
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.75 E-value=2.1 Score=44.11 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=117.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHH--hcHHHHHHhHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHhhhhhchhHHhh
Q 002465 380 EQLPAYLAAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQ 456 (919)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~i~~--~~~~~~~~~l~~l~~~l~~~l~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~ 456 (919)
..+..+=...+|..-.+++.-+..+.. .......++-..+...+-++|+-. -.-|...|+.+...+.+.++++-...
T Consensus 14 k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~ 93 (307)
T PF04118_consen 14 KALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQ 93 (307)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 333444446788887777766666555 111122233345566777777543 34688899999999999888866566
Q ss_pred hhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 457 ~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
.+.-..+.++..+.. ....||..-...+..+.-.+++ .+.|.+++++..++..+++++.++.+.++..+..+....+.
T Consensus 94 dl~i~~~GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 94 DLPIYSPGLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred hcHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh
Confidence 777778888888887 6778998888888888888886 68899999999999999999999999999999999988886
Q ss_pred H
Q 002465 537 H 537 (919)
Q Consensus 537 ~ 537 (919)
.
T Consensus 172 ~ 172 (307)
T PF04118_consen 172 K 172 (307)
T ss_pred h
Confidence 5
No 230
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.72 E-value=1.4 Score=47.67 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC--------
Q 002465 360 ECLDRLAIALGGNTIVPVASEQLPAYLAA----PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-------- 427 (919)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l-------- 427 (919)
++|..|...-|-..++|.+..++.+-..- .|-+.-...+..+.++.....-.+.+|+..++|.++.++
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 44555544444345555555555544331 233333334444444444443356688888888877763
Q ss_pred --CCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcHHHH
Q 002465 428 --RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (919)
Q Consensus 428 --~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (919)
.|.++.+|.-|+..++.++..++... ...-..++..+.+.+.|. ........+...|..|-...-...+.|.+...
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~ 384 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEY 384 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHH
Confidence 35688999999999999999998766 456778888888888883 22344556666666665433334455666666
Q ss_pred HHHHHHHhh
Q 002465 505 VSKLLVLLQ 513 (919)
Q Consensus 505 ~~~L~~~l~ 513 (919)
...+.+.+.
T Consensus 385 ~~~l~~~l~ 393 (576)
T KOG2549|consen 385 NERLQSVLD 393 (576)
T ss_pred HHHhhhhcc
Confidence 655555443
No 231
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=4.4 Score=43.94 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=101.8
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHh-hcCCChhHHHHHHHHHHHhhhhhhhhccccHH
Q 002465 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC-VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (919)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~-~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (919)
..-+++-|..+.++.+|..-+-.++.-.... .-...+..++.. .++.+..+|.+|..++|.+|-.-++
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GT----gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGT----GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcC----CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 3345555666678888877665555433322 223345555555 5667889999999999988864332
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
+++-..+.|.+.-+..||....-+|+-.+..-. .. ..++++..+..+...-+|+.|+-.+.-+.-.+.
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G---~~--------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTG---DK--------VATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc---cH--------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 222223334333388999988888886664321 11 334455555667778899999988888777777
Q ss_pred HHHHHhHHHHHHHHHHhhcCCC
Q 002465 264 RFLRRQLVDVVGSMLQIAEAES 285 (919)
Q Consensus 264 ~~~~~~~~~li~~ll~~~~~~~ 285 (919)
+.+.|.+..|...+.++..+++
T Consensus 654 ~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 654 PELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred cccChhHHHHHHHHHHHHhhhh
Confidence 7777888888887777765544
No 232
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.68 E-value=0.86 Score=37.31 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=60.4
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHH
Q 002465 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (919)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~ 265 (919)
+...+..++|+ .+.+|..++..|..++..-. .-...+|.++..+...++++++-+.-.|+.+|..++..+|..
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 44455677888 88999999999999998632 123456788999999999999999999999999999988764
Q ss_pred HH
Q 002465 266 LR 267 (919)
Q Consensus 266 ~~ 267 (919)
+-
T Consensus 78 vl 79 (92)
T PF10363_consen 78 VL 79 (92)
T ss_pred HH
Confidence 43
No 233
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.62 E-value=0.69 Score=48.98 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=83.3
Q ss_pred HHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-----C-ChHHHHHHHHHH
Q 002465 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASAV 485 (919)
Q Consensus 412 ~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-----~-~~~v~~~a~~al 485 (919)
...|+..+...+ .+.+...|..|+..|.. ..-+.+++|.++..+.+. . +..+.......+
T Consensus 176 lq~yf~~It~a~----~~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v 241 (343)
T cd08050 176 LQLYFEEITEAL----VGSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMV 241 (343)
T ss_pred HHHHHHHHHHHH----hCCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 334555555544 34677778887766544 234455555555555431 1 344445566666
Q ss_pred HHHHhcCCCccccCcHHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 486 LNFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~i~~~L~~~l~~----------~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
..++.+-.- .+.+|+..+++.++.++-. ....+|+.+...++.++...+.......+.++..+.+.+.+
T Consensus 242 ~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 242 RALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 777776553 4789999999999987622 23689999999999999888766545556666666666643
No 234
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.40 E-value=13 Score=40.01 Aligned_cols=309 Identities=15% Similarity=0.160 Sum_probs=167.1
Q ss_pred HHhHHHHHHHHHhhCC------CC-CHhHHHHHHHHHHHhhhhh--chhHHhhhhhhhHHHHHhhccCCC-ChHHHHHHH
Q 002465 413 VKNLEQVLSMVLNSFR------DP-HPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAA 482 (919)
Q Consensus 413 ~~~l~~l~~~l~~~l~------d~-~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~ll~~l~~~l~d~~-~~~v~~~a~ 482 (919)
.++++.++..+..-+. ++ +.++-..|+.++|.+.-+. ...+..++...++...+..+.++. +..+.....
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l 113 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445555554444332 33 6788889999999876432 111112333456666677776532 234555555
Q ss_pred HHHHHHHhcCCCccccCcHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcc
Q 002465 483 SAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKS 560 (919)
Q Consensus 483 ~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~--~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 560 (919)
++|.. +++++..+.......+-..+..+.+ +...+-...+.++-.+....+..|....+.-+|.++..+-+ .
T Consensus 114 ~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~----~ 187 (372)
T PF12231_consen 114 WCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLS----S 187 (372)
T ss_pred HHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----c
Confidence 55544 4555555444444433333333443 45677788899999999999988887777777777766543 2
Q ss_pred cchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHH
Q 002465 561 NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (919)
Q Consensus 561 ~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll 640 (919)
...+|.+|+.+...+...+|++.. +...+....+...... .|...+.+.+.
T Consensus 188 ~k~ir~~a~~l~~~~~~~l~~~~~------~s~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~ 238 (372)
T PF12231_consen 188 AKDIRTKAISLLLEAKKCLGPNKE------LSKSVLEDLQRSLENG-----------------------KLIQLYCERLK 238 (372)
T ss_pred chHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHhccccccc-----------------------cHHHHHHHHHH
Confidence 334677777776666666664322 1111112221111111 11122222222
Q ss_pred HhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccc---ccccHHHHHHHH
Q 002465 641 QSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEG---FFPWIDQVAPTL 717 (919)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~---~~p~~~~~~~~l 717 (919)
+.+..+ ++ ...|.+.-+.++.-++.. -.+|+...+.+.
T Consensus 239 ~mi~~~------------------~~---------------------~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~ 279 (372)
T PF12231_consen 239 EMIKSK------------------DE---------------------YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVP 279 (372)
T ss_pred HHHhCc------------------CC---------------------cchHHHHHHHHHHHhCCchhhccHhHhHHHHHH
Confidence 222110 00 011333334444444432 235667777777
Q ss_pred ccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHH
Q 002465 718 VPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT----EICASMLDSLN 793 (919)
Q Consensus 718 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~----~~~~~~~~~l~ 793 (919)
-.++.+. ++.+|..|..+=..++-.... +.......+..+..++...+..+... ++...++.+++
T Consensus 280 e~cFn~~-d~~~k~~A~~aW~~liy~~~~----------~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~ 348 (372)
T PF12231_consen 280 EKCFNSS-DPQVKIQAFKAWRRLIYASNP----------NELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLC 348 (372)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHHHhcC----------CccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHh
Confidence 7777764 789999999988887763311 11122445555555666667666555 77777888888
Q ss_pred HHHHH-hCCCCCHH
Q 002465 794 ECIQI-SGPLLDEG 806 (919)
Q Consensus 794 ~~i~~-~g~~~~~~ 806 (919)
.++-. +.+..++.
T Consensus 349 ~lly~~f~p~~~~~ 362 (372)
T PF12231_consen 349 NLLYYAFRPSASPL 362 (372)
T ss_pred chHHHHhCCCCCHH
Confidence 77744 33434444
No 235
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.10 E-value=1.6 Score=38.91 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=72.2
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHH
Q 002465 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPA 464 (919)
Q Consensus 386 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~ll~~ 464 (919)
+.++||..-...+..+..-. ..-...+..|.+.+++++|.++..|+..|..+++.+++.+...+.. ..+..
T Consensus 13 ~~~~D~~~il~icd~I~~~~--------~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~ 84 (133)
T cd03561 13 LEEPDWALNLELCDLINLKP--------NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE 84 (133)
T ss_pred cCCccHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH
Confidence 34577765444333333221 2234667788888999999999999999999999999877555544 56666
Q ss_pred HHhhccC--CCChHHHHHHHHHHHHHHhcCCC
Q 002465 465 LAGAMDD--FQNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 465 l~~~l~d--~~~~~v~~~a~~al~~l~~~~~~ 494 (919)
+.+.+.. ..++.|+..+...+......++.
T Consensus 85 l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 85 LVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6666654 25678999999999999888764
No 236
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.09 E-value=2.3 Score=38.39 Aligned_cols=102 Identities=12% Similarity=0.242 Sum_probs=73.9
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHH
Q 002465 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLP 463 (919)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~ 463 (919)
.+..+||..-...+..+..=. ..-...+..|.+.+.+.+|.|...|+..|..+++.++..+.... ...++.
T Consensus 12 ~l~~~dw~~il~icD~I~~~~--------~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 12 KLTSENWGLILDVCDKVKSDE--------NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred cCCCcCHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 445678865444433333211 22346777888889999999999999999999999998764332 346777
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHhcCCC
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~ 494 (919)
.+.+.+.+..++.|+..+...+....+.+..
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 7777776645789999999999999888863
No 237
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.03 E-value=0.95 Score=41.65 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=65.4
Q ss_pred cccchhhhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechhHHHHHHHHHHHHHHHHHhccccc
Q 002465 628 FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF 707 (919)
Q Consensus 628 ~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~l~~~~~~~~~ 707 (919)
..|+++.++|.+......+++. .-.+.+|...-.|..+ ++-|.+|.+++..+...+...+.
T Consensus 3 i~~~L~~llP~ly~et~v~~el------------------ir~V~mGPFKh~vDDG-LelRK~ayE~lytlLd~~~~~~~ 63 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPEL------------------IREVDMGPFKHKVDDG-LELRKAAYECLYTLLDTCLSRID 63 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STT------------------EEEEEETTCEEEEEGG-GHHHHHHHHHHHHHHHSTCSSS-
T ss_pred hHHHHHHHHHHHHHHhccCHHH------------------heeeecCCceeeecCc-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578899999999877654431 1223344444455444 66788999999999998876653
Q ss_pred ccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHH
Q 002465 708 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 708 p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (919)
+..++..+...+.| +.+||.-+...+.+++...
T Consensus 64 --~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 64 --ISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp --HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-
T ss_pred --HHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhC
Confidence 66677778888887 6899999998888886554
No 238
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=92.64 E-value=25 Score=41.06 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=84.1
Q ss_pred cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCCCC----c
Q 002465 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENG----W 141 (919)
Q Consensus 67 ~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~i~~~~~~~~~----w 141 (919)
.+.+|..+..|-.-||+ |.+-.. .-..|.....+. .+-.+|-.+.--+..-..+.|.+.. -
T Consensus 14 qs~~p~s~k~AE~~Lrq---------we~q~g-----F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 14 QSPDPPSVKCAEERLRQ---------WEKQHG-----FALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred cCCCCchHhhHHHHHHh---------hhcccc-----HHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 36778888888888877 543211 112233333322 3445666555444444443332110 0
Q ss_pred c----hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhc
Q 002465 142 P----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (919)
Q Consensus 142 ~----~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (919)
| .+-..++.++-+.+....-.-..+++.++..- +-..|++++|-+...|++. +..+-...+.++.+++..+.
T Consensus 80 p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~D---fPdeWpTL~~DL~~~Ls~~-D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 80 PDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLD---FPDEWPTLVPDLLSLLSEK-DMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred CccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhcc---CcccchhHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHh
Confidence 0 12344555555544444334456677777652 2236999999999999885 55555555555555555432
Q ss_pred C-cchhhHHhhhHHHHHHHHHHHH
Q 002465 218 S-SADRDRFQDLLPLMMRTLTESL 240 (919)
Q Consensus 218 ~-~~~~~~~~~~~p~il~~l~~~l 240 (919)
. ....+.|..+.|.+...++..+
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl 179 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFL 179 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHH
Confidence 1 1134566677777766665544
No 239
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.62 E-value=2.4 Score=38.15 Aligned_cols=113 Identities=11% Similarity=0.164 Sum_probs=77.1
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHH
Q 002465 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLP 463 (919)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~ 463 (919)
.+..+||..-...+..+..- ...-...+..|.+.+++.++.++..|+..|..+++.++..+...+ ...++.
T Consensus 16 ~l~~~dw~~ileicD~In~~--------~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~ 87 (142)
T cd03569 16 LLGEPDLASILEICDMIRSK--------DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD 87 (142)
T ss_pred ccCccCHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34567776544333333211 012346778888889999999999999999999999988664333 345666
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHH
Q 002465 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L 508 (919)
.+.+.+.+..++.|+..+...+......++.. |.++.+....
T Consensus 88 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~---~~l~~i~~~y 129 (142)
T cd03569 88 ELKDLIKTTKNEEVRQKILELIQAWALAFRNK---PQLKYVVDTY 129 (142)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC---cccHHHHHHH
Confidence 66666654367899999999999998888643 5555444433
No 240
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=34 Score=42.60 Aligned_cols=181 Identities=13% Similarity=0.043 Sum_probs=102.4
Q ss_pred HhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHH
Q 002465 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (919)
Q Consensus 432 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~ 511 (919)
+.-+..++.+.+.++..... ....+.++..+.....+..+.++|.++...+..++-...--......+.|-..+.+.
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~---~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~ 1577 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIG---HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESL 1577 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 44455566666665544322 233455666666444443678999998888877553211112346678888888899
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHH
Q 002465 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (919)
Q Consensus 512 l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i 591 (919)
+.+....+|+.+..+++.+.......+.+ ............. . ......-.|+..+|.++-+++ -.+..++++.
T Consensus 1578 l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~-s-~~~i~~HgavlgLgA~VlafP-y~vP~wip~~ 1651 (1710)
T KOG1851|consen 1578 LNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSK-S-KDEIKAHGAVLGLGAIVLAFP-YVVPLWIPKP 1651 (1710)
T ss_pred HcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhhc-c-hHHHHhhhhHHHHHHHHHhcc-ccchhhhHHH
Confidence 99998899999999999998766544433 1112222222111 1 112233346778888877765 3333344444
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc
Q 002465 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (919)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g 625 (919)
+..+...-. +..+++..+-.+++.+-+...
T Consensus 1652 L~~Ls~fa~----e~~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1652 LMNLSSFAR----ESAAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred HHHHHhhcC----CchHHHHHHHHHHHHHHHHhh
Confidence 444332111 124566666666655544433
No 241
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=14 Score=37.74 Aligned_cols=307 Identities=15% Similarity=0.141 Sum_probs=163.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHH
Q 002465 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPA 464 (919)
Q Consensus 386 l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~ll~~ 464 (919)
-.+++-..-.-++.++..+..+-++.+...-..++-.++. ++.++..+-...+.++..-+..-...- ..++ -.+++.
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~hE~nr-Q~~m~~~il~L 193 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA-LKVESEEVTLLTLQWLQKACIMHEVNR-QLFMELKILEL 193 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHhHHHH-HHHHHhhHHHH
Confidence 4566666666777788877777766544333333333322 233344555555555544332211111 1222 356677
Q ss_pred HHhhccCCCChHHHHHHHHHHHHHHhcCC----CccccCcHHH-----HHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhh
Q 002465 465 LAGAMDDFQNPRVQAHAASAVLNFSENCT----PEILTPYLDG-----IVSKLLVLLQNG-KQMVQEGALTALASVADSS 534 (919)
Q Consensus 465 l~~~l~d~~~~~v~~~a~~al~~l~~~~~----~~~l~~~l~~-----i~~~L~~~l~~~-~~~v~~~~l~al~~l~~~~ 534 (919)
+.+.+......++-...++++..+.-.=+ ......|-.. ++..|...++.. ++.+...+..+++.++-.-
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 77666654555677788898888763211 0011122222 344555555432 3556666677777766432
Q ss_pred HHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhh------hHHHHHHHHHHHhcCCCCCC
Q 002465 535 QEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD------DAKQVMEVLMSLQGSQMETD 606 (919)
Q Consensus 535 ~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~------~~~~i~~~l~~l~~~~~~~~ 606 (919)
+ |=.-+ .-=+..++.++.++++.+.+.+-..++..+..+ .|.+.... -.+.++..+.+. .+
T Consensus 274 E--~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral---AG~DsvKs~IV~~gg~~~ii~l~~~h------~~ 342 (461)
T KOG4199|consen 274 E--ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL---AGSDSVKSTIVEKGGLDKIITLALRH------SD 342 (461)
T ss_pred H--HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH---hCCCchHHHHHHhcChHHHHHHHHHc------CC
Confidence 2 10000 111345666765555555444434444444444 34332222 245555555542 22
Q ss_pred Cc-hhHHHHHHHHHHHHHhcCCcccchh-hhhHHHHHhcccCCCccccCCCCCcccccCCCcccchhccCCeeeeeechh
Q 002465 607 DP-TTSYMLQAWARLCKCLGQDFLPYMS-VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (919)
Q Consensus 607 ~~-~~~~~~~~~~~l~~~~g~~~~~~l~-~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (919)
+| +...++.++..+|-..+..-..+++ ..-...++.++..|..
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~----------------------------------- 387 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA----------------------------------- 387 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH-----------------------------------
Confidence 34 5666776777777666665444442 2333444444433321
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHH
Q 002465 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (919)
Q Consensus 685 ~~~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 741 (919)
......||.++-.++.+..+.-.|++.-=++.++..-.. .|++++..+-.+|.+|-
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA-NHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhcC
Confidence 112346899999999988888788887767766665443 47888888888877763
No 242
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.52 Score=43.97 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=73.4
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh---h
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~---~ 534 (919)
+...+|.++..|.+ .+...|--|-..+..++...+ +.+.|.++.++..|-..+...+.++...++.++..+... .
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 44667777777776 445555566666777777766 456799999999999999999999999999999888654 5
Q ss_pred HHHHHHhHhhhhHHHHHH
Q 002465 535 QEHFQKYYDAVMPFLKAI 552 (919)
Q Consensus 535 ~~~~~~~~~~i~~~l~~~ 552 (919)
|..+.|||.+++|.+--.
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 688999999999987654
No 243
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.31 E-value=13 Score=43.71 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=81.4
Q ss_pred HHHHHHHHHcc---CCCHHHHHHHHHHHHHhhccCCC---------CcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHH
Q 002465 57 LTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDS---------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKL 124 (919)
Q Consensus 57 ~~~~l~~il~~---~~~~~~R~~a~i~L~~~i~~~~~---------~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~ 124 (919)
++..+..++.. ..++.+|..|.+.+..++.+... .....+.......+...+-.+... .+..-+..+
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 510 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-GDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-T-HHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-cCHHHHHHH
Confidence 44555555543 34567788888777777665211 113334445555555444444433 455666677
Q ss_pred HHHHHHHHhcccCCCCcchhHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHH
Q 002465 125 CDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDV 201 (919)
Q Consensus 125 ~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 201 (919)
..+++++.. +..++.+...+.+. ....|..|+.+|..+....++. ..+.+++++.+-- .+.++
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~~I~~n~~---e~~Ev 576 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---VREILLPIFMNTT---EDPEV 576 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHHHHHH-TT---S-HHH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---HHHHHHHHhcCCC---CChhH
Confidence 788887642 56788888877766 5688999999999887766654 3345555554322 36789
Q ss_pred HHHHHHHHHH
Q 002465 202 KIAALNAVIN 211 (919)
Q Consensus 202 r~~a~~~l~~ 211 (919)
|.+|+..+..
T Consensus 577 RiaA~~~lm~ 586 (618)
T PF01347_consen 577 RIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999766543
No 244
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.18 E-value=10 Score=43.99 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=89.3
Q ss_pred CcchhHHHHHHhhcCC----ChhHHHHHHHHHHHhhhhhhhhc--------cccHHHHHHHHHHhhCCCCChHHHHHHHH
Q 002465 140 GWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQYIGDTL--------TPHLKHLHAVFLNCLTNSNNPDVKIAALN 207 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~----~~~~r~~al~~l~~l~~~~~~~~--------~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 207 (919)
.-++++..+..++.++ ++..+..++..++.++......- ..+.+.+...+..+.... +.+.+..+++
T Consensus 390 Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~Lk 468 (574)
T smart00638 390 PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKG-DEEEIQLYLK 468 (574)
T ss_pred CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcC-CchheeeHHH
Confidence 4567888888888764 45788899999999887432111 123333444444444444 5666788888
Q ss_pred HHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcC
Q 002465 208 AVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLE 287 (919)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~ 287 (919)
+|+++-.. .. ++.+...+. .-......+|..|+.+|..++...+....+. ++.+..|...+
T Consensus 469 aLGN~g~~-------~~----i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~ 529 (574)
T smart00638 469 ALGNAGHP-------SS----IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEP 529 (574)
T ss_pred hhhccCCh-------hH----HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCC
Confidence 88865421 11 112222222 1123356799999999998888777655543 34555667788
Q ss_pred hhHHHHHHHHHHHH
Q 002465 288 EGTRHLAIEFVITL 301 (919)
Q Consensus 288 ~~vr~~al~~l~~l 301 (919)
.++|..|+..+...
T Consensus 530 ~EvRiaA~~~lm~t 543 (574)
T smart00638 530 PEVRMAAVLVLMET 543 (574)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999998776654
No 245
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=19 Score=38.48 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC
Q 002465 394 HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (919)
Q Consensus 394 r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~ 473 (919)
-.+|+..+-.+++...-..+-.-..++..+++.|.-++..+-......|-.++-...... .---..++..+.+.+.. .
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-Q 357 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-C
Confidence 345677777788776654444556788889998877777766666667777665544433 22344677777787777 7
Q ss_pred ChHHHHHHHHHHHHHH
Q 002465 474 NPRVQAHAASAVLNFS 489 (919)
Q Consensus 474 ~~~v~~~a~~al~~l~ 489 (919)
.+.++......+-++.
T Consensus 358 h~dL~~~tl~LlfNlS 373 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLS 373 (791)
T ss_pred CHHHHHHHHHHhhhcc
Confidence 7888877777666654
No 246
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=26 Score=39.85 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 002465 688 KATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDF 767 (919)
Q Consensus 688 k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (919)
|.+|.-.||-+.-.-++.. +..+.+++.++++-||-.++-+||-.+... . .+...
T Consensus 572 rRaAVialGFVl~~dp~~~--------~s~V~lLses~N~HVRyGaA~ALGIaCAGt------------G---~~eAi-- 626 (929)
T KOG2062|consen 572 RRAAVIALGFVLFRDPEQL--------PSTVSLLSESYNPHVRYGAAMALGIACAGT------------G---LKEAI-- 626 (929)
T ss_pred HHHHHHHheeeEecChhhc--------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC------------C---cHHHH--
Confidence 5566666665544444322 222334556678999999999988654321 1 11111
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002465 768 IIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSS 824 (919)
Q Consensus 768 ~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~ 824 (919)
.+++.+..++..=|+..++-+++.++.+..+...| .++.+-+.+.+++.++.+
T Consensus 627 ---~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p-kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 627 ---NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP-KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred ---HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHhhhhhh
Confidence 24555666777788999999999998887776554 466677777777776554
No 247
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.95 E-value=11 Score=43.89 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=77.9
Q ss_pred HHHHHHHhhCC----CCHHHHHHHHHHHHHHHHh-cHH-------HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHh
Q 002465 378 ASEQLPAYLAA----PEWQKHHAALIALAQIAEG-CAK-------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (919)
Q Consensus 378 l~~~l~~~l~~----~~~~~r~aal~~l~~i~~~-~~~-------~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l 445 (919)
++..+.+++.+ ++...|.+++.+++.++.. |.. ....+++.+...+-.+....+...+..++.+||++
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 34444444443 4678999999999999873 321 11234444444444444555666788889999987
Q ss_pred hhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhc--CChhHHHHH
Q 002465 446 STDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGA 523 (919)
Q Consensus 446 ~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~--~~~~v~~~~ 523 (919)
.... -...+.|.+. .-.. ....+|..|+++|..+....+.. +.+.+++++.+ .++++|..|
T Consensus 474 g~~~-------~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHPS-------SIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CChh-------HHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHH
Confidence 6421 1122222222 1122 45789999999999887766532 23444555444 347788776
Q ss_pred HHHH
Q 002465 524 LTAL 527 (919)
Q Consensus 524 l~al 527 (919)
+.++
T Consensus 537 ~~~l 540 (574)
T smart00638 537 VLVL 540 (574)
T ss_pred HHHH
Confidence 5554
No 248
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.90 E-value=0.31 Score=32.84 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHHhh
Q 002465 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (919)
..+|.++..++++++.||..|+|+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36888999999999999999999999986
No 249
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.81 E-value=3.6 Score=40.72 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCCcchHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhC------CCC----CHhHHHH
Q 002465 370 GGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF------RDP----HPRVRWA 437 (919)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l------~d~----~~~vr~~ 437 (919)
|-.++.|.++.++.+.+.. .|-..-...+....++.....-+..+|+.+++|.++.++ +++ +-.+|.-
T Consensus 227 GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~ 306 (450)
T COG5095 227 GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDV 306 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 3346677777776655432 233344444455555554433344577777777666653 222 3358999
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-ChHHHHHHHHHHHHHHhc
Q 002465 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 438 a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~-~~~v~~~a~~al~~l~~~ 491 (919)
|+..++..+..++... ...-+.+...+++.+-|.. ....+-.|..+++.+-..
T Consensus 307 AA~ll~yV~~~F~~~Y-ktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 307 AADLLKYVFSNFSSSY-KTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHHHHHHHhhhhHhh-hhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchh
Confidence 9999999998888765 4556777777777665522 223455666666665443
No 250
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.48 E-value=14 Score=40.75 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHccC
Q 002465 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTE 262 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~-~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 262 (919)
...|..|.++|+.++.+++..... .+.+ .+...+++.....|..+.-++.+.+...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~--------~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~ 157 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ--------EIFQPLLLPYLNSPSATQRLLAALVLEEWAKAC 157 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH--------HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhC
Confidence 456889999999999988543222 2222 4555566666666667777777776544
No 251
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.44 E-value=22 Score=37.90 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhh----h-h
Q 002465 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~----~-~ 174 (919)
.-..+-+.+...+..|.+.........+++...... ....=+.++..+...+++..+.+|..-+..++.++. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 445566677888888888887777777777766654 223446788999999999988899999999998876 1 1
Q ss_pred hhhccccHHHHHHHHHHhhCCCCChHHH----HHHHHHHHHHHH-hhcCcch-hhHHhhh----HHHHH--HHHHHHHhc
Q 002465 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVK----IAALNAVINFIQ-CLTSSAD-RDRFQDL----LPLMM--RTLTESLNN 242 (919)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr----~~a~~~l~~l~~-~~~~~~~-~~~~~~~----~p~il--~~l~~~l~~ 242 (919)
.....+..+.+...+.+...++ .+... ..|.-.+. ... ..+.... ...+..+ =|.++ +.+...+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-- 173 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--
Confidence 1222335556666666666665 22211 11211111 000 0000000 0000000 00111 0111110
Q ss_pred CChHHHHHHHHHHHHHHccCcHHHHHhH-HHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHH
Q 002465 243 GNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 321 (919)
Q Consensus 243 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 321 (919)
.+++.....++++..+.........+.. ..+-..++.++........+|..|+..+..+... .|.. +-..
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~---~~~~------l~~~ 244 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS---NPEL------LSKS 244 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---ChHH------HHHH
Confidence 2444555566666666655443332222 3334444444444445789999999999988883 3321 4455
Q ss_pred HHHHHHHhhcCC
Q 002465 322 LFAILMSMLLDI 333 (919)
Q Consensus 322 li~~l~~~l~~~ 333 (919)
++..+-.++...
T Consensus 245 li~~l~~~l~~~ 256 (339)
T PF12074_consen 245 LISGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHHHhc
Confidence 666666666543
No 252
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.43 E-value=13 Score=36.02 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=111.9
Q ss_pred CCccCchhhHHHHHHH----cCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---------HHHHHHHH-HHc
Q 002465 1 MAAESTHLQQSQLAVI----LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---------SLTLKLAH-LLQ 66 (919)
Q Consensus 1 ~~~~~~~~~~~~~~~~----~~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~---------~~~~~l~~-il~ 66 (919)
||.-|.|.+..|..+- -+.+.+.+.+.+..+.+ ++.|..|-.+|-.-.+..|+ +...+|++ ++.
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 7778876666555430 11233456666666654 46777777766554442232 11222322 221
Q ss_pred ------c---CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHH-HHHHH----HHHH----HHhhcchHhHHHHHHHHH
Q 002465 67 ------R---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ-SSLKS----MLLQ----SIQLESAKSISKKLCDTV 128 (919)
Q Consensus 67 ------~---~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~-~~ik~----~ll~----~l~~e~~~~vr~~~~~~i 128 (919)
. .+...-|-.-+..|-+.+..+ ++++ ..++. .+.. ...+-+...+|-..-.+|
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQcvASH---------pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVI 149 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQCVASH---------PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 149 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHHHHhcC---------cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHH
Confidence 0 234455777777666666554 1111 11221 1222 222334567888888889
Q ss_pred HHHHhcccCC----CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhh-hh--------hhccccHHHHHH-HHHHhhC
Q 002465 129 SELASNILPE----NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IG--------DTLTPHLKHLHA-VFLNCLT 194 (919)
Q Consensus 129 ~~i~~~~~~~----~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~-~~--------~~~~~~~~~l~~-~l~~~l~ 194 (919)
+.+.+.+-.+ --|.+++|.+...+.++....+..|..+++.|.-. .| +.|. ++..++. ++.+..+
T Consensus 150 gaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~ 228 (293)
T KOG3036|consen 150 GALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVS 228 (293)
T ss_pred HHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhc
Confidence 9888864321 14789999999999999988889999999877532 11 1121 2333333 3334444
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 002465 195 NSNNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~ 214 (919)
.+ +......+++|...+..
T Consensus 229 ~p-s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 229 MP-SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred CC-CHHHHHHHHHHHHHhcC
Confidence 44 66666777777665543
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.39 E-value=4.7 Score=36.42 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=67.4
Q ss_pred CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHH
Q 002465 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~ 576 (919)
..-...+..|.+.+.+.++.++..++..+..++..+|..|...+ ..++..|..++... ....++.++++.+...+
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHH
Confidence 34567788888889999999999999999999999998876433 46667777776442 45568888899888888
Q ss_pred hhhChhhhhhhHHHHHHHH
Q 002465 577 MAVGKDKFRDDAKQVMEVL 595 (919)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l 595 (919)
..+..+.-.+++.++++.+
T Consensus 110 ~~f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 110 DEFKNDPSLSLMSDLYKKL 128 (144)
T ss_pred HHhCCCcccHHHHHHHHHH
Confidence 7765332223344444443
No 254
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.86 E-value=5.8 Score=35.35 Aligned_cols=79 Identities=18% Similarity=0.080 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~ 577 (919)
.-...+..|.+-++++++.++..++..+..++..+|..|...+ ..++..|..++....+ ...++.++++.+...+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 4556778888899999999999999999999999998886544 4577777777654322 22388889999888887
Q ss_pred hhC
Q 002465 578 AVG 580 (919)
Q Consensus 578 ~~~ 580 (919)
++.
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 775
No 255
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.80 E-value=7.5 Score=40.88 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC---CChHHHHHHHHHHHHHHhcCCCc
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF---QNPRVQAHAASAVLNFSENCTPE 495 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~---~~~~v~~~a~~al~~l~~~~~~~ 495 (919)
.+..+++.+..+++.++..|+..++.+....+... ......+++.+++.+.+. ++..++..++.++..++..-.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-- 182 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS-EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-- 182 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch--
Confidence 45556667788899999999999999988765543 222234445554444431 344566888888988875421
Q ss_pred cccCcH--HHHHHHHHHHh-----hcCC--hhHHHHHHHHHHHHHHh--hHHHHHHhHhhhhHHHHHHHhhc
Q 002465 496 ILTPYL--DGIVSKLLVLL-----QNGK--QMVQEGALTALASVADS--SQEHFQKYYDAVMPFLKAILVNA 556 (919)
Q Consensus 496 ~l~~~l--~~i~~~L~~~l-----~~~~--~~v~~~~l~al~~l~~~--~~~~~~~~~~~i~~~l~~~l~~~ 556 (919)
.+..+ ...++.+...+ .+.. ..++-.++-++=.+... .-..+.... ++|.+..+++..
T Consensus 183 -~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~ 251 (312)
T PF03224_consen 183 -YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDS 251 (312)
T ss_dssp -HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH-
T ss_pred -hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhc
Confidence 11111 45566666666 2222 33333344433333221 112333333 888888888764
No 256
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.72 E-value=4.5 Score=38.82 Aligned_cols=121 Identities=12% Similarity=0.165 Sum_probs=76.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhh
Q 002465 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (919)
Q Consensus 508 L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~ 587 (919)
+...++-........++.+++.+....|....|++..++..+-++-.+ +....|..+=.|+|...+++|++.+..
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL~- 79 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVLS- 79 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHHH-
Confidence 344454444567788999999999999988778887777777776432 224577788889999999999876543
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHh
Q 002465 588 AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (919)
Q Consensus 588 ~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~ 642 (919)
++++- +.+ .+..++-+.+++-.+..-. .+....=|...++|..-..
T Consensus 80 ---~lPLn--l~~--~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 80 ---ILPLN--LDN--ADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARRL 125 (198)
T ss_pred ---HCCCC--ccC--CCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHHHH
Confidence 22221 111 1122334566665555432 3455666667777766544
No 257
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.64 E-value=3.6 Score=37.13 Aligned_cols=87 Identities=15% Similarity=0.285 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChH---HHHHHHHHHHHHHhc
Q 002465 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSEN 491 (919)
Q Consensus 416 l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~~---v~~~a~~al~~l~~~ 491 (919)
-...+..|.+.+.+.+|.++..|+..|..+.+++++.+...+ -..++..+.+.+.+..... |+..+...+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 356778888899999999999999999999999988774443 3356666666555423333 899999999999888
Q ss_pred CCCccccCcHHHHH
Q 002465 492 CTPEILTPYLDGIV 505 (919)
Q Consensus 492 ~~~~~l~~~l~~i~ 505 (919)
+... |.+..+.
T Consensus 120 f~~~---~~~~~i~ 130 (140)
T PF00790_consen 120 FKSD---PELSLIQ 130 (140)
T ss_dssp TTTS---TTGHHHH
T ss_pred HCCC---CCchHHH
Confidence 8533 4444443
No 258
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=31 Score=38.01 Aligned_cols=153 Identities=11% Similarity=0.150 Sum_probs=84.6
Q ss_pred CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHH
Q 002465 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (919)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L 508 (919)
+.++.-++++..+..++....+.- ..++|.+++.+.+. ....+|..++..++.+.+..... ...+..++..+
T Consensus 401 ~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~ 473 (559)
T KOG2081|consen 401 ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYI 473 (559)
T ss_pred CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHH
Confidence 356677777777777777665533 34455544443331 22348889999999988877532 13455555555
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhH
Q 002465 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (919)
Q Consensus 509 ~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~ 588 (919)
...++... ....+..++-.+...+..++...++.+...+........+.+. .-.+..++.+...++..+..+.+
T Consensus 474 ~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~----a~l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 474 RQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEA----ACLLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHhcCCHhhhhHHH
Confidence 55555443 4445555666666666666655555555444433322122111 11344455555555555565666
Q ss_pred HHHHHHH
Q 002465 589 KQVMEVL 595 (919)
Q Consensus 589 ~~i~~~l 595 (919)
+++....
T Consensus 548 ~el~~~~ 554 (559)
T KOG2081|consen 548 EELCEPQ 554 (559)
T ss_pred HHHhhHH
Confidence 6655543
No 259
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.47 E-value=56 Score=40.84 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=153.8
Q ss_pred HHhhcchHhHHHHHHHHHHHHHhcccCCCCcc-----hhHHHHHHhhc---CC-ChhHHHHHHHHHHHhhhhhh------
Q 002465 111 SIQLESAKSISKKLCDTVSELASNILPENGWP-----ELLPFMFQCVS---SD-SVKLQESAFLIFAQLSQYIG------ 175 (919)
Q Consensus 111 ~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~-----~ll~~l~~~~~---s~-~~~~r~~al~~l~~l~~~~~------ 175 (919)
.|...++..||--++-|++.|.+..-|+..++ +++.+++..+. +. +|.. ..-..++..++..-.
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f-~r~~~lletl~~~k~~l~~~l 135 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYF-KRYFYLLETLAKVKFCLLMLL 135 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcch-hhHHHHHHHHHHhHHHheeec
Confidence 34445889999999999999999877765543 44444444332 22 2211 112333333333211
Q ss_pred hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002465 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (919)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l 255 (919)
+.-...+..++.+|...++++ .+.--..-...+..++...+. .+. .++.++..-+-.+..+....|...=
T Consensus 136 ~d~~e~~~~~f~~f~d~~~~~-~~~~v~~~~~i~~~li~e~d~------v~~---e~L~~ll~~lv~~~~~~~~~a~~la 205 (1266)
T KOG1525|consen 136 EDCQELVHELFRTFFDLARKG-HPKKVFNMLDIAIMLITEEDT------VQS---ELLDVLLENLVKPGRDTIKEADKLA 205 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhhcc------chH---HHHHHHHHHhccCCCCccHHHHHHH
Confidence 001124566777777777665 333323344444444443321 111 3444444333344555666666666
Q ss_pred HHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 002465 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (919)
Q Consensus 256 ~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~ 335 (919)
..+++.++..+.+.+..++...+..-. ..-..++....+.+..+.. ..++.+..++|.|-..+....+
T Consensus 206 ~~li~~~a~~~~~~i~~f~~~~~~~~~--s~~~~~~~~~he~i~~L~~----------~~p~ll~~vip~l~~eL~se~~ 273 (1266)
T KOG1525|consen 206 SDLIERCADNLEDTIANFLNSCLTEYK--SRQSSLKIKYHELILELWR----------IAPQLLLAVIPQLEFELLSEQE 273 (1266)
T ss_pred HHHHHHhhhhhchhHHHHHHHHHhhcc--ccccchhhHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHhcchH
Confidence 666666666555555554443332211 1122334444555555554 2345667777777666543211
Q ss_pred CcccccCCCCCccccCCcccchHHHHHHHHHHHcCCC--cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH---
Q 002465 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--- 410 (919)
Q Consensus 336 ~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~--- 410 (919)
..+.-|...++.+....+.. ...+.++..+...+.+....+|.+++.....+.-..+.
T Consensus 274 -----------------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 274 -----------------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred -----------------HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 12333333333333221100 12333444444445566667777666655443321110
Q ss_pred --------------------------------HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh
Q 002465 411 --------------------------------VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 411 --------------------------------~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~ 448 (919)
.-..+.+.++..+.+.+.|..++||..|+..|.++-..
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11123344777888889999999999999999988774
No 260
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.34 E-value=6.8 Score=34.91 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChH-HHHHHHHHHHHHHhcCCC
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 494 (919)
Q Consensus 417 ~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~~-v~~~a~~al~~l~~~~~~ 494 (919)
...+..|.+.+++++|.++..|+..|..+...++..+...+ ...++..+.+.+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45677888899999999999999999999999988774444 3457777777776633333 999999999998887753
No 261
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.30 E-value=40 Score=38.85 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=66.3
Q ss_pred HHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC--ccc-c
Q 002465 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EIL-T 498 (919)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~--~~l-~ 498 (919)
..+.+|...++.++..|..-+..++..-...-..-.--.=++.++..|.. ++.+|+..||++|.+++-.-.. +.+ .
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 33445567777788777766666553211111011222456788888888 8999999999999999854322 111 1
Q ss_pred CcHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHh
Q 002465 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADS 533 (919)
Q Consensus 499 ~~l~~i~~~L~~~l~~-~~~~v~~~~l~al~~l~~~ 533 (919)
++.+.+ +.+++++.. .+.++++.+-..+-.+...
T Consensus 316 ~~~~Gv-~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 316 KELNGV-PTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhcCCh-HHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 334443 444555543 6778888777666655544
No 262
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.25 E-value=9.3 Score=36.51 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhhccC
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~ 88 (919)
-+.++|+.+.+++..+|..|-+.+....++ +|..+++.++.+. +++++.+|..|..+++....++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999876654 8988999988854 5699999999999999998875
No 263
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.79 E-value=7.9 Score=34.66 Aligned_cols=102 Identities=8% Similarity=0.172 Sum_probs=71.9
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhh-hhhH
Q 002465 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVL 462 (919)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~ll 462 (919)
+.+.++||..-...+..+..=. ..-...+..+.+.+++.+|.|...|+..|..+++.++..+..... ..++
T Consensus 12 ~~l~~~dw~~ileicD~In~~~--------~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 12 PSNREEDWEAIQAFCEQINKEP--------EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred ccCCCCCHHHHHHHHHHHHcCC--------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 3455778865554444443211 112356777888899999999999999999999999987744433 4566
Q ss_pred HHHHhhccC-----CCChHHHHHHHHHHHHHHhcCC
Q 002465 463 PALAGAMDD-----FQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 463 ~~l~~~l~d-----~~~~~v~~~a~~al~~l~~~~~ 493 (919)
..+++.+.. ..++.|+......+......++
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 666666642 1467899999999999888776
No 264
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=89.68 E-value=3.4 Score=37.71 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHH----------------HHHHhHHHHHHHHHhhCCCCC----HhH
Q 002465 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK----------------VMVKNLEQVLSMVLNSFRDPH----PRV 434 (919)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~----------------~~~~~l~~l~~~l~~~l~d~~----~~v 434 (919)
.|.+++.+.+.+++ +......++..|..+.+...+ .+....+.++..+...+.... ..+
T Consensus 24 Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 24 WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHH
T ss_pred CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 34444444444443 355555566666555543321 233345566666666654332 788
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHH
Q 002465 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al 485 (919)
...++.+++.+..+.+.... .-..+++.+++.+++ +..+..|+.+|
T Consensus 103 ~~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 99999999999998776442 234699999999976 44578888765
No 265
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=52 Score=39.22 Aligned_cols=139 Identities=16% Similarity=0.148 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhhhhhhh---ccc--cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHH
Q 002465 158 KLQESAFLIFAQLSQYIGDT---LTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (919)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~---~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~i 232 (919)
...+.++.+|..+....|+- |.. .+-..++.+...+.....++++.-|++.+..+..+.+ ..+....- ..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~---Cv~~~a~~--~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE---CVTDLATC--NV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH---HHHHHHhh--hH
Confidence 35577888888888775531 111 1223445555666555577888888888776554422 11111111 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhh
Q 002465 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (919)
Q Consensus 233 l~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~ 304 (919)
+..+.+.+. ..|..|..++..|-.+.+.. +.....+. .-+.+++.++-+ ...+..|.++.+.+..+...
T Consensus 1815 L~~LL~lLH-S~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~-~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1815 LTTLLTLLH-SQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCL-TNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhc-cCcHHHHHHHHHHHHHhhhc
Confidence 333334443 47888999999998887643 32222221 111222333322 23577888888888877664
No 266
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.22 E-value=40 Score=37.30 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-Cc--hHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhhccCCCCcccCC
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DP--DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~-~p--~~~~~~l~~il~~---~~~~~~R~~a~i~L~~~i~~~~~~~w~~l 96 (919)
.+.++|+.+-++|..+|+..-+.|..+... .+ +.+...|..-+.. ...+.+|.-|...|.+.= .+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q---------e~ 162 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ---------EM 162 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH---------hc
Confidence 577888888999999999999988766542 11 2233444444432 567889999999887753 23
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChh-HHHHHHHHHHHhhhhhh
Q 002465 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQYIG 175 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~-~r~~al~~l~~l~~~~~ 175 (919)
.-...+.+.+.+...++++|+..||+.+.--|. .-+.-.|++.+-..+-+.. .|...-++|..+-....
T Consensus 163 ~~neen~~~n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 163 ELNEENRIVNLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred cCChHHHHHHHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh
Confidence 334456677888888999999999997643322 1234456777777665543 33344555655533322
Q ss_pred hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 002465 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (919)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (919)
..+.+++ + ++.-++.+. +..|+.++..++.
T Consensus 233 lsi~kri---~-l~ewgl~dR-e~sv~~a~~d~ia 262 (885)
T COG5218 233 LSIDKRI---L-LMEWGLLDR-EFSVKGALVDAIA 262 (885)
T ss_pred cccccee---h-hhhhcchhh-hhhHHHHHHHHHH
Confidence 2222211 1 344455554 5556655555543
No 267
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.06 E-value=5.9 Score=35.71 Aligned_cols=80 Identities=24% Similarity=0.187 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~ 577 (919)
.-...+..|.+.+.+.++.++..++..+..++..+|..|...+ ..++..|..++.. .....++.++++.+...+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 4566788888889999999999999999999999998776433 4666777776643 2345688888888888877
Q ss_pred hhChh
Q 002465 578 AVGKD 582 (919)
Q Consensus 578 ~~~~~ 582 (919)
+++.+
T Consensus 115 ~f~~~ 119 (142)
T cd03569 115 AFRNK 119 (142)
T ss_pred HhCCC
Confidence 76533
No 268
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=88.99 E-value=48 Score=37.98 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=83.4
Q ss_pred hHHHHHHhhc---CCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcc
Q 002465 144 LLPFMFQCVS---SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (919)
Q Consensus 144 ll~~l~~~~~---s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (919)
|.++..+-+. +.....+...+..+....+. ....++++|.....++ -..|+..+++.+..++..-+
T Consensus 268 Lk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~-------ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kP--- 336 (988)
T KOG2038|consen 268 LKYFSQRPLLELTNKRLRDKILLMWYFEHELKI-------LYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKP--- 336 (988)
T ss_pred hHHHhhChhhhccccccccceehHHHHHHHHHH-------HHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCc---
Confidence 4444444333 33333444444444433332 3455666776666776 78999999999998887643
Q ss_pred hhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHH
Q 002465 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (919)
Q Consensus 221 ~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~ 300 (919)
+.-. .++..+...+.+++..+...|-..|..+...+|..-.-.+..|-.+++. ++.+......|+.+|..
T Consensus 337 --EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ 406 (988)
T KOG2038|consen 337 --EQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQ 406 (988)
T ss_pred --HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcc----cCccccceeehhhhhhh
Confidence 1112 3455555666778888888888888888877775322233444444332 44555566677888877
Q ss_pred HHh
Q 002465 301 LAE 303 (919)
Q Consensus 301 l~~ 303 (919)
+.-
T Consensus 407 ~~L 409 (988)
T KOG2038|consen 407 MKL 409 (988)
T ss_pred hHh
Confidence 655
No 269
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.95 E-value=32 Score=36.94 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=95.2
Q ss_pred CCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhh--hcc-ccHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHHH
Q 002465 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLT-PHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 139 ~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~--~~~-~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (919)
-.|..+.+.++.++-+++..+|.+|++++..+...... .+. -+++.+ +...|..+ .+..-|..|++.+..+++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~---ii~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIF---IIRSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchh---hHhhhcccCCChHHHHHHHHHHHHHHH
Confidence 36778888888766666699999999999888765321 111 122222 23334333 245678999999999997
Q ss_pred hhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH--hHHHHHHHHHHhhcCCCcChhHHH
Q 002465 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRH 292 (919)
Q Consensus 215 ~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~li~~ll~~~~~~~~~~~vr~ 292 (919)
.-.+ .+.+ =..+++.+.....+.+...+..|++.+.+++-..|..+.. -+..++..+.. . ..++..
T Consensus 98 ~~~~---~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~ 165 (371)
T PF14664_consen 98 IKKG---PKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISE 165 (371)
T ss_pred hcCC---cccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHH
Confidence 6321 1112 2256777777777888899999999999999888876532 23444444432 1 122455
Q ss_pred HHHHHHHHHHh
Q 002465 293 LAIEFVITLAE 303 (919)
Q Consensus 293 ~al~~l~~l~~ 303 (919)
..+..+..+..
T Consensus 166 ~l~~~lL~lLd 176 (371)
T PF14664_consen 166 SLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHHhC
Confidence 55666666666
No 270
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.90 E-value=34 Score=40.19 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~ 260 (919)
+.+.+...+....... +.+.+..++++|+++-.. ..++.+...+.... .....+|..|+.+|..++.
T Consensus 487 ~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhh
Confidence 4455555555555565 778889999999987521 12223333222110 2367789999999998877
Q ss_pred cCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHH
Q 002465 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (919)
Q Consensus 261 ~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l 301 (919)
.++....+ .++.+..|...+.++|..|+..+...
T Consensus 554 ~~~~~v~~-------~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 554 HCPEKVRE-------ILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp T-HHHHHH-------HHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred cCcHHHHH-------HHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 77655544 33455556667888999998766653
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.48 E-value=8.8 Score=34.24 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH-h-hhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-D-AVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~-~-~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~ 577 (919)
--...+..|.+.++++++.++..++..+..++..+|..|...+ . .++.-+..++... ......+|.++++.+...+.
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSE 112 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999999999999999998876543 2 5565667766442 12355688899999988887
Q ss_pred hhCh
Q 002465 578 AVGK 581 (919)
Q Consensus 578 ~~~~ 581 (919)
.++.
T Consensus 113 ~f~~ 116 (133)
T cd03561 113 SFGG 116 (133)
T ss_pred HhcC
Confidence 7763
No 272
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.18 E-value=0.97 Score=30.42 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=27.7
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
-...+|.|++.|.+ +++.++..|+++|.+++
T Consensus 10 ~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKS-PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 34688999999998 99999999999999986
No 273
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=88.02 E-value=4.5 Score=34.02 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccC
Q 002465 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (919)
Q Consensus 410 ~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d 471 (919)
+.+.++.+.++..+...+.+-.+.||..++..|.-+.+.+++.....+...+++..+..+.-
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999999999984378888999999988876
No 274
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.97 E-value=2.4 Score=36.30 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=49.6
Q ss_pred HHHHHHHhhC-CCCCHhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 418 QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 418 ~l~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
.++..|...| .+.++.+...||.=||.++...+..- ..+ -..-..+++.+.+ +++.||..|..|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 3445555555 34478888899999999999876532 222 2345677888888 999999999999988764
No 275
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=87.95 E-value=40 Score=35.80 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=51.6
Q ss_pred cchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCC----CCChHHHHHHHHHHHHHHH
Q 002465 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN----SNNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 141 w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~vr~~a~~~l~~l~~ 214 (919)
-|.++.++..++.|.|.+....+..++|.+++.-..-+.-.-.+++..++.++.. .++.+++.+++.++.+++-
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 3669999999999999999999999999998763322211223344444444422 1377788899999998874
No 276
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=53 Score=37.05 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=56.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
.+..+...+.=.++..|.+.=.++|-++-+.+. -+++..+-+..+|.+..|-..++.++|-+.....+ ..
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN----AR 710 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN----AR 710 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccCCcch----HH
Confidence 444555566667888999998998888766554 25777888888999999999999999877654432 23
Q ss_pred hhhhHHHHHh
Q 002465 458 HPQVLPALAG 467 (919)
Q Consensus 458 ~~~ll~~l~~ 467 (919)
+..++..+.+
T Consensus 711 la~mLrqlaS 720 (878)
T KOG2005|consen 711 LAQMLRQLAS 720 (878)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 277
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.37 E-value=2.5 Score=36.26 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=46.3
Q ss_pred hhHHHHHHhh-cCCChhHHHHHHHHHHHhhhhhhhhccccH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 002465 143 ELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 143 ~ll~~l~~~~-~s~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (919)
+++..|.+.+ .+.++.....|+.=+|.+++..|..- ..+ -..-..+++.|+++ +++||..|+.|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 4556666666 33456666667777788887766431 112 22456678888997 99999999999988875
No 278
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=63 Score=40.52 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHhcHH-HHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 002465 383 PAYLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (919)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~l 461 (919)
.+.+...|...|.-|+..++.+.+.... .....++.......+...|.+..||..+...+..+...++..+ .+|+..+
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~l 125 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSL 125 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhh
Confidence 3445567888899999999988775432 1122233333444456789999999999999999999998888 7999999
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 462 LPALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 462 l~~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
+|...-..-| ....|...|...+....
T Consensus 126 i~~wl~~~~d-~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 126 IPPWLGGQFD-LDYPVSEAAKASFKDGF 152 (1312)
T ss_pred hhhhhheecc-cchHHHHHHHHHHHhhc
Confidence 9999888777 66777666666655543
No 279
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.05 E-value=39 Score=33.69 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=101.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCC
Q 002465 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG 140 (919)
Q Consensus 61 l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~ 140 (919)
|+.-+....++.........|......+ . .....+- ..+..|.+.+....+..+.+.+..+.+.. ...
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~----~-----~~~~~v~-~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~ 72 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHK----N-----VCVPPVL-QTLVSLVEQGSLELRYVALRLLTLLWKAN--DRH 72 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccC----c-----cchhHHH-HHHHHHHcCCchhHHHHHHHHHHHHHHhC--chH
Confidence 3333445566666666666666665442 0 1111121 23344444344444444555555555532 124
Q ss_pred cchhHHHHHHhh-------cCC--ChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhh-CCCCChHHHHHHHHHHH
Q 002465 141 WPELLPFMFQCV-------SSD--SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL-TNSNNPDVKIAALNAVI 210 (919)
Q Consensus 141 w~~ll~~l~~~~-------~s~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~vr~~a~~~l~ 210 (919)
++.+-+.+.... .+. ......+....+..+|...++ +...+++.+..++ ++. +..++..+++++.
T Consensus 73 f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~ 147 (234)
T PF12530_consen 73 FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 455555554411 111 223333434567777777665 6788888888888 565 7788999999999
Q ss_pred HHHHhhcCcchhhHHhhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHcc--CcHHHHHhHHHHHHHHHHhhcCC
Q 002465 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGT--EPRFLRRQLVDVVGSMLQIAEAE 284 (919)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~-~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~li~~ll~~~~~~ 284 (919)
.+.+.- +.++. ..++.+...++ +..|.+.+..+..+.-+... ..+........++..++......
T Consensus 148 ~Lc~~~--------vvd~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 148 PLCEAE--------VVDFY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHh--------hccHH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 988541 11222 22344443332 33444444433333322221 12333444567777777776544
No 280
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.64 E-value=67 Score=36.01 Aligned_cols=241 Identities=14% Similarity=0.078 Sum_probs=120.8
Q ss_pred HHHHHHHHHHH-hhhcCchHHHHHHHHHHc----cCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHH
Q 002465 38 QRSEAELLFNL-CKQQDPDSLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (919)
Q Consensus 38 ~r~~Ae~~L~~-~~~~~p~~~~~~l~~il~----~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l 112 (919)
.|-+|-+.|.. +++ .|-.-++.++...+ .+.++++|+.|..+|..++... ... + ...|..+++.+
T Consensus 6 ~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~~-~----~~~R~~fF~~I 75 (464)
T PF11864_consen 6 ERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DSS-S----GLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----ccc-c----HHHHHHHHHHH
Confidence 34444444443 444 45333455665544 3567889999999999999874 111 2 23345555666
Q ss_pred hhcchHhHHHHHHHHHHHHHhc--ccCCCCcchhHHHHHHhhcCC---------------------------ChhHHHHH
Q 002465 113 QLESAKSISKKLCDTVSELASN--ILPENGWPELLPFMFQCVSSD---------------------------SVKLQESA 163 (919)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~i~~~--~~~~~~w~~ll~~l~~~~~s~---------------------------~~~~r~~a 163 (919)
.....+..-....+++..+... +.. ..-.++.|.+..++... +...-...
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDID-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCch-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 5433333223333444444432 111 12234455554443210 11111223
Q ss_pred HHHHHHhhhhhhhhcc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhc
Q 002465 164 FLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (919)
Q Consensus 164 l~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~ 242 (919)
+..+..+++.-...+. ..+..++..+...-....+...-..++..+..++.+-.= . ..-++.++..|+...+.
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i--P----~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI--P----SESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC--C----hHHHHHHHHHHhhHhcc
Confidence 4444444444322222 244555554444433332455557788888888875210 1 23355677788776543
Q ss_pred CChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcC--C--CcChhHHHHHHHHHHHHHh
Q 002465 243 GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--E--SLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 243 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~--~--~~~~~vr~~al~~l~~l~~ 303 (919)
. +....+..++..++..... ...+..+..++.+ . ..+..+-.-|+.++..+.-
T Consensus 229 ~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 229 V--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred c--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHh
Confidence 3 5667788888888764422 2333444444421 1 1223334457777776655
No 281
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=85.45 E-value=33 Score=40.23 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=80.6
Q ss_pred CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC
Q 002465 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (919)
.-..|+..+-+++..+ ..|..++.+|+.++..-+..+-... ..+++-++++|....+..+-..|+.+|..++..++
T Consensus 67 ~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip- 143 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP- 143 (668)
T ss_pred cHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc-
Confidence 3457888888888764 5788999999999987554332111 24666666666654478888899999999998875
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhcCC------h-----HHHHHHHHHHHHHHccCcHHHHHhHH
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNNGN------E-----ATAQEALELLIELAGTEPRFLRRQLV 271 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~~~------~-----~~~~~a~~~l~~l~~~~~~~~~~~~~ 271 (919)
.....++|.++.++..++.-.. + .........|.-+-..+|..|..|+.
T Consensus 144 ----~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~NF~~flr 203 (668)
T PF04388_consen 144 ----SSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLYPCNFLSFLR 203 (668)
T ss_pred ----chhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcccchHHHHHH
Confidence 3456677888887776663111 0 01112223445555566666666665
No 282
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=85.15 E-value=53 Score=34.47 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.2
Q ss_pred CcChhHHHHHHHHHHHHHh
Q 002465 285 SLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 285 ~~~~~vr~~al~~l~~l~~ 303 (919)
+.+..+|.+|+.-|-.+|.
T Consensus 72 d~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 72 DDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred ccchhhHHHHHhccchhcc
Confidence 4567889999888888777
No 283
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.12 E-value=85 Score=39.68 Aligned_cols=164 Identities=17% Similarity=0.265 Sum_probs=98.1
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh-cc---ccHHHHHHH
Q 002465 113 QLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT---PHLKHLHAV 188 (919)
Q Consensus 113 ~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-~~---~~~~~l~~~ 188 (919)
....+..+|..+.+|++.-. +..|..++..+.......+....+.++..+..+.+...+. +. ..+...++.
T Consensus 1046 ~~s~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~c 1120 (1514)
T KOG0929|consen 1046 KRSSSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKC 1120 (1514)
T ss_pred hccCcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHH
Confidence 33356778888888888322 2589999999998888888888888888877655543322 22 234455666
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHhhcCcc---h--------hhHH-hhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002465 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSA---D--------RDRF-QDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (919)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~--------~~~~-~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~ 256 (919)
+.+..++...+..-..+++.+..++..+.+.. . ...+ ..++|.+.. +...+.+....+|..+++.+-
T Consensus 1121 l~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~-ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1121 LEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQ-LSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhh-hhHHhhccHHHHHHHHHHHHH
Confidence 66665544344445555555555554433220 0 0111 233444433 333334668889999999999
Q ss_pred HHHccCcHHHHHhH-HHHHHHHHHhhc
Q 002465 257 ELAGTEPRFLRRQL-VDVVGSMLQIAE 282 (919)
Q Consensus 257 ~l~~~~~~~~~~~~-~~li~~ll~~~~ 282 (919)
.+...++..|.++. ..++..++.+..
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeeccc
Confidence 88887776665433 345555555543
No 284
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.04 E-value=1e+02 Score=38.31 Aligned_cols=177 Identities=12% Similarity=0.145 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHH---hhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 002465 387 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL---NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (919)
Q Consensus 387 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~---~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~ 463 (919)
.++.-++|...+.++-.+.+.+++......+.+++.+- ..-...+..+...+..++--++.++=+.+....+..++.
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 45667788888888888888888744333344444333 332333555666667777776665544332344556666
Q ss_pred HHHhhccCCCChHHHHHH---HHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHH
Q 002465 464 ALAGAMDDFQNPRVQAHA---ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (919)
Q Consensus 464 ~l~~~l~d~~~~~v~~~a---~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~ 540 (919)
.+........+..+--.| .|.++.++.+ +....++..-... .+..+-...+.+ ..
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~------------------km~S~sed~~~~~---~~e~~~ss~~~~-~~ 989 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKN------------------KMFSTSEDSCAYN---SVEDLYSSMKSK-EI 989 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHh------------------hhhccchhhhhhc---chhhhcccccch-hh
Confidence 655543332333333333 3444444433 0000000000000 011111111111 11
Q ss_pred hHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhh
Q 002465 541 YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (919)
Q Consensus 541 ~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~ 586 (919)
..+.+.=.+...+.+..+++..++|..|.+++-.+..+-| .++.+
T Consensus 990 l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg-~~l~~ 1034 (1610)
T KOG1848|consen 990 LPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHG-SKLGT 1034 (1610)
T ss_pred hhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhc-ccCCh
Confidence 2344555566666666666777899999998877766655 34555
No 285
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=84.64 E-value=34 Score=40.03 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 002465 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (919)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~ 259 (919)
|+-..++..+-..+..+ ..|..++..|+.++..-+.....-.-..+++.+++.|. .+.+..+...|+.+|..++
T Consensus 66 P~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~---~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQ---FDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ccHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHh---hcccHHHHHHHHHHHHHHh
Confidence 35567788887888764 77999999999999865421111111234444444443 3667788889999999999
Q ss_pred ccCcHHHHHhHHHHHHHHHHhh
Q 002465 260 GTEPRFLRRQLVDVVGSMLQIA 281 (919)
Q Consensus 260 ~~~~~~~~~~~~~li~~ll~~~ 281 (919)
-..+..+.+|++.++..+..++
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999888776
No 286
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=84.56 E-value=4.8 Score=33.02 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhh-cCCCCHHHHHHHHHHHHHHHhhhhhhhc
Q 002465 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMW-GKDKTAEERRIAICIFDDVAEQCREAAL 918 (919)
Q Consensus 852 ~e~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (919)
....+|+.+++++..+++.+|..+...-+.+...+.+.+ ++.++...+=-|+..+..+ |++++
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~v 81 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAV 81 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHH
Confidence 356799999999999999999988777777777777755 4556666666777777665 55554
No 287
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=84.47 E-value=1e+02 Score=37.05 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=100.6
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh----hchhHHhhhhhhhHHHHHhhccC-CCChHHHHHHHHHHHHHHhc
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD----LGPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 417 ~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~----~~~~~~~~~~~~ll~~l~~~l~d-~~~~~v~~~a~~al~~l~~~ 491 (919)
+..+|.+...+-++++.+|.=|...+.++... ...++.....+.+...+... +. ..++..-..--..+..+++.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 55667777778888999999888888887653 22222112233333333333 22 12333333344566666666
Q ss_pred CCCccccCcHHH-----HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhH-----------HHHHHHhh
Q 002465 492 CTPEILTPYLDG-----IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMP-----------FLKAILVN 555 (919)
Q Consensus 492 ~~~~~l~~~l~~-----i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~-----------~l~~~l~~ 555 (919)
++.+.+..++.. ++..+++.+.......-...+.++..+....+..|-...+.+-| ...+.|..
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~ 277 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQ 277 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHh
Confidence 665555444433 66777777777745555778899999999999887543333222 22233322
Q ss_pred cCCcccc-hh--hhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 002465 556 ATDKSNR-ML--RAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 556 ~~~~~~~-~l--r~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (919)
..+++.. .- ....+.-+..+..++....-.+-+..++..+++
T Consensus 278 ~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~ 322 (727)
T PF12726_consen 278 SQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLE 322 (727)
T ss_pred hccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 2111110 00 112344455556666645445566677777766
No 288
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=83.23 E-value=6.1 Score=31.95 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=53.8
Q ss_pred hhHHHHHHh-hcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 002465 143 ELLPFMFQC-VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (919)
Q Consensus 143 ~ll~~l~~~-~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (919)
+++..+... .++++..+|+..+.|+..+....++.+..-|+.++.++.....++ +..+-..|++++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-DESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-CccHHHHHHHHHh
Confidence 455445554 445678999999999999999988888888999999999998887 7777777777654
No 289
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.00 E-value=1.8 Score=29.33 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHH
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAI 442 (919)
Q Consensus 417 ~~l~~~l~~~l~d~~~~vr~~a~~~L 442 (919)
+.+...+...+.|+++.||.+|...|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 47788888899999999999998653
No 290
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=82.95 E-value=11 Score=30.38 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002465 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (919)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~ 256 (919)
-..++..+...+.+..+.++|.-.+.|+.+++... ...+..=.+.+++++.....++++.....|++++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 45566666666555458899999999999999863 23445556788899988888878888888887764
No 291
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.77 E-value=6.2 Score=39.64 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=72.3
Q ss_pred HHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCc
Q 002465 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (919)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (919)
..++..+.+++|.||.+|...+..+... +......|....++.+.+.+.+ ..+ .+.|+.++.++....+- -...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l--~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEEL--RKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHH--HHHH
Confidence 3466678999999999999877776665 3333367788999999999998 544 56777888888876531 1123
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 501 l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
+..++..++..+.++....-..++..++.+++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 44466666666666655555555566665554
No 292
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.68 E-value=8.2 Score=38.85 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=71.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhh
Q 002465 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (919)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~l 461 (919)
+..++.+.++.+|.+|+.-+..+..+....+..+-...++.+.+.+.+..+ -..|..++.+++.... +....+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 456788999999999997766655554444555666788888888888877 4456678888887542 223445557
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 462 LPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 462 l~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
+..++..+.+ +........|..+.++.+
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 7777777777 555666667777777654
No 293
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.59 E-value=22 Score=32.02 Aligned_cols=102 Identities=6% Similarity=0.125 Sum_probs=68.1
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCC-CCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhH
Q 002465 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVL 462 (919)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll 462 (919)
.+.++||..-...+..+..=. ..-...+..|.+.+. ..++.|...|+..|..+++.+|..+.... ...++
T Consensus 13 ~l~~~dw~~ileicD~In~~~--------~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 13 SLQSEDWGLNMEICDIINETE--------DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCCcCHHHHHHHHHHHhCCC--------CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 455678865544444433211 122456777777776 57999999999999999999998764322 23555
Q ss_pred HH-HHhhccCC--CChHHHHHHHHHHHHHHhcCCC
Q 002465 463 PA-LAGAMDDF--QNPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 463 ~~-l~~~l~d~--~~~~v~~~a~~al~~l~~~~~~ 494 (919)
.. +.+.+... ....|+..+...+......++.
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 54 55655431 2458999999999999888864
No 294
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=82.49 E-value=3.9 Score=33.55 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCC--CHhHHHHHHHHHHHhh
Q 002465 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP--HPRVRWAAINAIGQLS 446 (919)
Q Consensus 388 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~--~~~vr~~a~~~L~~l~ 446 (919)
+++|..|.-|...++.++...++.....-++++..+.+.+.|+ +...++.|+..|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 5689999999999999998877655556678888888888876 4567888998888874
No 295
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.46 E-value=40 Score=32.21 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=51.6
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhh
Q 002465 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (919)
Q Consensus 143 ~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (919)
.+++.+.+++.+++..+|..|+.++..+.+.. +. +=...+|.+.....|+ ++.+|..|...+..+.+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---Lv-nP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG---LV-NPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---CC-ChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHh
Confidence 45677777888888888889998888887641 21 1235777777777786 8889999988888877764
No 296
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.44 E-value=12 Score=38.76 Aligned_cols=110 Identities=12% Similarity=0.209 Sum_probs=76.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
+.....+...+.+|.....++.-++.--++ -...+..|.+.++..+|.|.-.|+..++.++..|+..+....
T Consensus 13 v~KAT~e~nT~enW~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 13 VEKATDEKNTSENWSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHhcCcccccccHHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 333444556778998777666555543322 235677788889999999999999999999999987664333
Q ss_pred -hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCc
Q 002465 458 -HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (919)
Q Consensus 458 -~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~ 495 (919)
..++...+...+.+...+.|++.....+....+.+..+
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 23444445555553367889888888888888877644
No 297
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=82.16 E-value=1e+02 Score=35.33 Aligned_cols=412 Identities=11% Similarity=0.111 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcch-------H----hHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHH
Q 002465 95 RLSLHTQSSLKSMLLQSIQLESA-------K----SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESA 163 (919)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~-------~----~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~a 163 (919)
.++++..+.+-+..+..++.... . .+-...|+++|.+++.-+. ..-..++..|-+..+..+ ..+...
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~-sVsdRF~~eL~~~~~~~~-~~~~~~ 104 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV-SVSDRFIAELEKLRKDSN-DAESKI 104 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHhcccCC-chHHHH
Confidence 45666666666666666654211 1 2334556777777765433 233455666666554222 222222
Q ss_pred HHHHHHh----hhhhh-hhcc---ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcc----hhhHHhhhHHH
Q 002465 164 FLIFAQL----SQYIG-DTLT---PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA----DRDRFQDLLPL 231 (919)
Q Consensus 164 l~~l~~l----~~~~~-~~~~---~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~~p~ 231 (919)
..++..+ .+..| +.+. .++..+.+.+.+.- .+.+++.+-+..+..++.-+.... ....+...+..
T Consensus 105 ~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h---~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 105 ELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH---KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 2222222 01111 1121 13334444443321 256799999999988876543221 11233344444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHccC-cHHHHHhHH-HHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhc--c
Q 002465 232 MMRTLTESLNNGNEATAQEALELLIELAGTE-PRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE--R 307 (919)
Q Consensus 232 il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~--~ 307 (919)
+.+.+.+.... +..-..++-....+.... +++|..+-. .+++.+..-+. +...|..+++++..++-.+- +
T Consensus 182 i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klK----dk~~r~~~l~~l~RLlWvYL~~r 255 (552)
T PF14222_consen 182 IYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLK----DKETRPVALECLSRLLWVYLVYR 255 (552)
T ss_pred HHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcC----ChhhhHHHHHHHHHHHHHHHhcc
Confidence 44444444432 333344566666555444 456666666 57776665553 34678888888887766521 1
Q ss_pred cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcc-hHHHHHHHHHhh
Q 002465 308 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAYL 386 (919)
Q Consensus 308 ~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l 386 (919)
.+.........++.++..++.. ....|...| ......-.+.+..++.... +.. -..+++.+..-.
T Consensus 256 ~~Es~n~T~krL~~i~~~lfp~-----~kk~~i~~D--------~~~~~~lv~ii~~I~~~~~-df~~~~iI~~LL~~~~ 321 (552)
T PF14222_consen 256 CPESLNNTTKRLDSIFKLLFPK-----GKKGWIPRD--------PEPLNPLVQIIRFIGYKHL-DFAFRNIIFPLLNVSF 321 (552)
T ss_pred cCCCchHHHHHHHHHHHHHccC-----CCCcccCCC--------hhhhhhHHHHHHhHhhhCc-chHHHHHHHHHHcccc
Confidence 1111111122344455544421 112344332 1122233455555554443 322 334555554433
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHhcHHHHHH-------------------hHHHHHHHHHhhCCCCCHhHHHHHHHHH
Q 002465 387 A-----APEWQKHHAALIALAQIAEGCAKVMVK-------------------NLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (919)
Q Consensus 387 ~-----~~~~~~r~aal~~l~~i~~~~~~~~~~-------------------~l~~l~~~l~~~l~d~~~~vr~~a~~~L 442 (919)
. .-+|+....++.++-.+.......-.+ ....-++ .....+......-...+.++
T Consensus 322 ~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l 400 (552)
T PF14222_consen 322 NGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRAL 400 (552)
T ss_pred ccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc-chhhccccHHHHHHHHHHHH
Confidence 2 235777778888888877654321000 0000111 00011111122223455666
Q ss_pred HHhhhhhchhHHhhhhhhhH-----------HHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCc--HHHHHHHHH
Q 002465 443 GQLSTDLGPDLQNQFHPQVL-----------PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY--LDGIVSKLL 509 (919)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~ll-----------~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~--l~~i~~~L~ 509 (919)
+++...+...+.......-- ..-+..-.| ...-+......+...++..+ ..+... ...+++.|.
T Consensus 401 ~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d--~~~~~~~~~~Lf~t~i~aiP-rcL~~~i~~~~lielL~ 477 (552)
T PF14222_consen 401 GKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDD--MVTDQKPQLDLFRTCIQAIP-RCLPSSIPFKSLIELLC 477 (552)
T ss_pred HHHHHHHHHHhchhhccCcccccCCCCCCccccccccccc--ccccccchhHHHHHHHHHcc-ccCCCCCcHHHHHHHHh
Confidence 66666554433211111000 000000111 00111233345555555554 223222 466777777
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhhH
Q 002465 510 VLLQNGKQMVQEGALTALASVADSSQ 535 (919)
Q Consensus 510 ~~l~~~~~~v~~~~l~al~~l~~~~~ 535 (919)
...-+.++.+++.+..+|-.++...+
T Consensus 478 R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 478 RGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCC
Confidence 77777889999999999999987664
No 298
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.67 E-value=1.3e+02 Score=36.54 Aligned_cols=128 Identities=13% Similarity=0.237 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhHHHHHHH-HHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC
Q 002465 394 HHAALIALAQIAEGCAKVMVKNLEQVLSM-VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (919)
Q Consensus 394 r~aal~~l~~i~~~~~~~~~~~l~~l~~~-l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~ 472 (919)
|...+...........+.+...+..++.. .+...+|-.|.+|..++..||-.+...+..+ .-...+..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~F---l~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIF---LSDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHH---hcchHHHHhcceeec-
Confidence 56666666665555555555555566553 3355689999999999999999888777544 233455555557888
Q ss_pred CChHHHHHHHHHHHHHHhcCC-CccccCcHHHHHHHHHHHh-hcCChhHHHHHHH
Q 002465 473 QNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVSKLLVLL-QNGKQMVQEGALT 525 (919)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-~~~l~~~l~~i~~~L~~~l-~~~~~~v~~~~l~ 525 (919)
.+..||..+..+|..|.+.-. ...+.-|...+=..++++. .+.+..||...+.
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~ 392 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLV 392 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 889999999999999998721 0123334444445566655 3444555554443
No 299
>PLN03205 ATR interacting protein; Provisional
Probab=80.79 E-value=78 Score=33.20 Aligned_cols=206 Identities=14% Similarity=0.176 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhh-hh------ccccHHHHHHHHHHhhC
Q 002465 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DT------LTPHLKHLHAVFLNCLT 194 (919)
Q Consensus 122 ~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~-~~------~~~~~~~l~~~l~~~l~ 194 (919)
.++.+..+.+.+.....-....|+..|++++.-.+..+...++++|..+.+++- +. ....|..++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 445556666665443333567899999999998888888889999998888743 21 22357777777766544
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHccCcH---------
Q 002465 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPR--------- 264 (919)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~--------- 264 (919)
......||..|+..+..++..-.....++.|... .+++.+.++++. ..-.++++++..|--+.. +|.
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~--~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~ 458 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVSK--EVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLH 458 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcch--HHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCC
Confidence 3347789999998877766543222234444321 344444444442 234466666655543322 111
Q ss_pred ----------------HHHHhHHHHHHHHHHhh---cCCCcChhHHHHHHHHHHHHHhhhcccchh-----hhcchhhHH
Q 002465 265 ----------------FLRRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAEARERAPGM-----MRKLPQFIN 320 (919)
Q Consensus 265 ----------------~~~~~~~~li~~ll~~~---~~~~~~~~vr~~al~~l~~l~~~~~~~~~~-----~~~~~~~~~ 320 (919)
...+-+..++..+-..+ .+...+-+++..++-.+.-++...+.+-.. ...-.+|+.
T Consensus 459 ~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLm 538 (652)
T PLN03205 459 EEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLM 538 (652)
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHH
Confidence 11122334444443333 233455667778887777777742111000 112346777
Q ss_pred HHHHHHHHhh
Q 002465 321 RLFAILMSML 330 (919)
Q Consensus 321 ~li~~l~~~l 330 (919)
-++..++.-|
T Consensus 539 LILqvLvSem 548 (652)
T PLN03205 539 LILHLLVAEI 548 (652)
T ss_pred HHHHHHHHHh
Confidence 7888777655
No 300
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=80.72 E-value=20 Score=31.28 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhh
Q 002465 373 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 373 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
.+++.++|.+...+. +.....|.++++.++.++...+ .-.+.+..++..+......... ...++.++..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 467888999999988 7788999999999999988653 1124556666666665555444 566778888877543
No 301
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.52 E-value=42 Score=30.07 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH--HHHHHHHhhCC------CCCHhHHHHHHHHHHHhhhh
Q 002465 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR------DPHPRVRWAAINAIGQLSTD 448 (919)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~l~~~l~~~l~------d~~~~vr~~a~~~L~~l~~~ 448 (919)
..+..+..-+++.++++..-|+..+..++..|+..+...+. ..+..+++.+. ..++.||...+..+..++..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35666777888999999999999999999999875543321 23344444443 35789999999999999887
Q ss_pred hch
Q 002465 449 LGP 451 (919)
Q Consensus 449 ~~~ 451 (919)
++.
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 753
No 302
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=80.51 E-value=5.6 Score=33.45 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=55.5
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHH-HHHhHhhhhHHHHHHHhhc
Q 002465 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNA 556 (919)
Q Consensus 495 ~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~ 556 (919)
+.+.||++.++..+...+..-.+.+|..++..+..+.+.+++. +..+...+++.+..++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4578999999999999999999999999999999999999988 7778889999999988653
No 303
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=80.29 E-value=2.7 Score=34.11 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH
Q 002465 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 392 ~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
..|++++.+|++++...+-.+.++++.++..+....+| ...|+..+-.+|+.+-..-.+.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 57899999999999999887888999999998888887 55688888899988876555443
No 304
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=80.04 E-value=21 Score=32.75 Aligned_cols=103 Identities=14% Similarity=0.220 Sum_probs=60.4
Q ss_pred HHHHHHHHHH-HHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 002465 690 TACNMLCCYA-DELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFI 768 (919)
Q Consensus 690 ~a~~~l~~l~-~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (919)
.|......+. .-.++.+.|+++.+++.+.+.+.++...+++...+...+.+...... ... ....+.++++.+.+
T Consensus 61 kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql-~e~----~~~~~~vk~L~~~m 135 (174)
T PF04510_consen 61 KAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQL-LES----SMRVDLVKELLPKM 135 (174)
T ss_pred HHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHH-hcc----ccHHHHHHHHHHHH
Confidence 3555666665 34567788999999999999998764445554444333333222211 110 11124456666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002465 769 IPALVEALHKEPDTEICASMLDSLNECIQ 797 (919)
Q Consensus 769 ~~~l~~~l~~e~~~~~~~~~~~~l~~~i~ 797 (919)
+..+-+.+....+.+.+..+++-+...+.
T Consensus 136 v~Sv~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 136 VKSVKELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 66666666566666666677776666653
No 305
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=79.92 E-value=67 Score=31.93 Aligned_cols=91 Identities=23% Similarity=0.363 Sum_probs=53.3
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccc
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEIL 497 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l 497 (919)
-+..+..++.+++...|..+..++|++-. +.-+|.+.+.|.+. .++-||..|+.||+.+..
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence 34556666777777777777777777532 23344444444431 346677777777766532
Q ss_pred cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 498 ~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
+..++.|.+.+.++.+.+++.+..++..+-
T Consensus 250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123455556666666677766666655543
No 306
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.31 E-value=55 Score=32.01 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCC-CCCHhHHHHH-HHHHHHhhhhhchhH
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAA-INAIGQLSTDLGPDL 453 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~-d~~~~vr~~a-~~~L~~l~~~~~~~~ 453 (919)
......+..+..++.-..|..|+..++........ ..++.+...+. -.++.+.... ..+++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 34455666777788888888888777654332221 23444444443 3456555554 333444321
Q ss_pred HhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 002465 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (919)
Q Consensus 454 ~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~ 533 (919)
.+ +...+.+.+-+.+ +++-+|..++.++..+... .+++.++..+...+.+++..+|..+-.+|..+...
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 12 5667777777888 7888888777666444433 56777888888888888899998888888888777
Q ss_pred hHHHHHHhHhh
Q 002465 534 SQEHFQKYYDA 544 (919)
Q Consensus 534 ~~~~~~~~~~~ 544 (919)
.++...+|+..
T Consensus 186 ~~~~v~~~l~~ 196 (213)
T PF08713_consen 186 DPDEVLEFLQK 196 (213)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66655555543
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.80 E-value=35 Score=29.67 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh---hhHHHHHhhcc-------CCCChHHHHHHHH
Q 002465 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP---QVLPALAGAMD-------DFQNPRVQAHAAS 483 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~---~ll~~l~~~l~-------d~~~~~v~~~a~~ 483 (919)
.....++..|.+.|++.++.|+.-++.+|-.++..-++.+. ..+. .++..+.+.-. +..+..||..|-.
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~-~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK-RELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH-HHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 34568899999999999999999999999999988776663 3322 34444444332 1245578888888
Q ss_pred HHHHHHh
Q 002465 484 AVLNFSE 490 (919)
Q Consensus 484 al~~l~~ 490 (919)
++..+..
T Consensus 113 l~~~if~ 119 (122)
T cd03572 113 LIKAIFS 119 (122)
T ss_pred HHHHHhc
Confidence 8877653
No 308
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.54 E-value=98 Score=33.00 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=96.2
Q ss_pred CcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-----hcHHHHHHhHHHHHHHHHhhCCCCCHhHHH----HHHHHH
Q 002465 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDPHPRVRW----AAINAI 442 (919)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~-----~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~----~a~~~L 442 (919)
..+-+.+...+.+.+++.....|.+-+.+++.+.. .......+.++.++..+.+....+.+.... .+.-.+
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 45667788889999999888899999999998875 223344456666666666666666544321 111122
Q ss_pred HHhhhhhchhHHh-hh-h--------h--hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHH
Q 002465 443 GQLSTDLGPDLQN-QF-H--------P--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (919)
Q Consensus 443 ~~l~~~~~~~~~~-~~-~--------~--~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~ 510 (919)
. +.....+.+.. .. . + -+-+.+.+.+.+ ..-..-.+.++..+................-..++.
T Consensus 136 ~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 A-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred H-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 2 11100010000 00 0 0 011222222222 222233455555555554422111113556677777
Q ss_pred HhhcC--ChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHh
Q 002465 511 LLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (919)
Q Consensus 511 ~l~~~--~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~ 554 (919)
++-++ .+.+|..++.++..+....+.. .-..++..+-+.+.
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLS 254 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHH
Confidence 77777 7999999999999988776654 23344455555543
No 309
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=4.3 Score=38.19 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=65.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh---hchhHH
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD---LGPDLQ 454 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~---~~~~~~ 454 (919)
.++.+...+...+...|.-|-..+..+....++.+.+.+++++..+...|...+.+|...++.+|.++... .++..
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL- 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL- 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh-
Confidence 34444555555555666666666666666556667789999999999999999999999999999988764 34555
Q ss_pred hhhhhhhHHHHH
Q 002465 455 NQFHPQVLPALA 466 (919)
Q Consensus 455 ~~~~~~ll~~l~ 466 (919)
.+|..+++|.+-
T Consensus 194 VPfYRQlLp~~n 205 (262)
T KOG3961|consen 194 VPFYRQLLPVLN 205 (262)
T ss_pred hhHHHHhhhhhh
Confidence 678889988764
No 310
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=78.24 E-value=81 Score=31.94 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=57.7
Q ss_pred hhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 002465 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (919)
Q Consensus 455 ~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~ 534 (919)
..+..+++..++..+.+ +.+.+|..+...|..++...+.. .|+-++++..++++++++.. ..|+..+..+....
T Consensus 183 P~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRS 256 (262)
T ss_pred chhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhc
Confidence 35566788888888888 77899999999999999988754 57888999999999987653 45666666655544
Q ss_pred H
Q 002465 535 Q 535 (919)
Q Consensus 535 ~ 535 (919)
|
T Consensus 257 ~ 257 (262)
T PF14225_consen 257 G 257 (262)
T ss_pred c
Confidence 4
No 311
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.18 E-value=3 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhh
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~ 446 (919)
.++.+++.++++++.++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777778889999999999999886
No 312
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.13 E-value=52 Score=29.64 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHH-HHHHHhhcCCcccchhhhHHHHHHHHH
Q 002465 500 YLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLV 575 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~-~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~-l~~~l~~~~~~~~~~lr~~ai~~l~~l 575 (919)
.-...+..|.+.+.. .++.+...++..+..++..+|..|-..+ ..++.- |..++....+ ....++.++++.+...
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~-~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNN-PPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCC-CcHHHHHHHHHHHHHH
Confidence 455667788887764 5788899999999999999998876433 356654 6666642211 2345788888888888
Q ss_pred HhhhChhhhhhhHHHHHHHH
Q 002465 576 GMAVGKDKFRDDAKQVMEVL 595 (919)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l 595 (919)
+.+++.+.-.+++.++++.+
T Consensus 114 ~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHhCCCccchHHHHHHHHH
Confidence 77765332223344444433
No 313
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=77.99 E-value=1.3e+02 Score=34.19 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccc-cHHHHHHHHH
Q 002465 121 SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFL 190 (919)
Q Consensus 121 r~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~ 190 (919)
-..++..+..++.. .+...|+++=..+.+.+-+++.-....++.+...++++...++-. |+..+...+.
T Consensus 245 Y~~vl~~Lctfi~~-~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik 314 (559)
T PF14868_consen 245 YQHVLVHLCTFIAS-LSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIK 314 (559)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 34455555555544 444699999999999999999989999999999998876655433 4555554443
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.98 E-value=17 Score=31.58 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhc-------CCcccchhhhHHHHHHH
Q 002465 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-------TDKSNRMLRAKSMECIS 573 (919)
Q Consensus 501 l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~-------~~~~~~~lr~~ai~~l~ 573 (919)
+..+++.|.+-|++.++.|+-.+|.+|..++...+..|...+..=...+..+.+-. ++.....+|..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 66888999999999999999999999999999998888877766555555543211 12234456777777766
Q ss_pred HH
Q 002465 574 LV 575 (919)
Q Consensus 574 ~l 575 (919)
.|
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 55
No 315
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.97 E-value=31 Score=29.74 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHh-----hccCCCChHHHHHHHHHHHHH
Q 002465 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAG-----AMDDFQNPRVQAHAASAVLNF 488 (919)
Q Consensus 415 ~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~ll~~l~~-----~l~d~~~~~v~~~a~~al~~l 488 (919)
....++..|.+.+.+.+|++...|+..|-.+.+.+++.+...... .++..+++ ......+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456788888899999999999999999999999998876433222 22223322 111114677888887776554
No 316
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=9.5 Score=41.34 Aligned_cols=135 Identities=15% Similarity=0.210 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHhH--HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccC
Q 002465 395 HAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD 471 (919)
Q Consensus 395 ~aal~~l~~i~~~~~~~~~~~l--~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d 471 (919)
.|++.+|-+++.+..- ....+ ..+.+.++..|.+|+.+|...+.-.+.++.--+.+-- ..+ -..++..+.+.+..
T Consensus 407 ~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 407 VAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 4555666666554432 12222 2577888899999998888877777766665444322 233 34677777777776
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCccccCcHHHH-HHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 002465 472 FQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVAD 532 (919)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i-~~~L~~~l~~~~~~v~~~~l~al~~l~~ 532 (919)
.+...|..+.|.+..+.-++..+.--.++..+ ++.++...+++...+++..++.+-.+..
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 67789999999999999888644211233333 7888999999999999999999988754
No 317
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.43 E-value=31 Score=29.75 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHH--HHHHHHh----hC--CCCCHhHHHHHHHHHHH
Q 002465 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (919)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~--l~~~l~~----~l--~d~~~~vr~~a~~~L~~ 444 (919)
.....++..+..-+++.+|++..-|+..+..++..+++.+..++.. .+..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456688888888999999999999999999999998765544432 1122211 11 35588999999887765
Q ss_pred hh
Q 002465 445 LS 446 (919)
Q Consensus 445 l~ 446 (919)
++
T Consensus 113 w~ 114 (115)
T cd00197 113 WA 114 (115)
T ss_pred Hh
Confidence 43
No 318
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=77.43 E-value=1e+02 Score=32.59 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHH-------HHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC--
Q 002465 69 PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSS-------LKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-- 139 (919)
Q Consensus 69 ~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~-------ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~-- 139 (919)
-+-+.|+-++.++.++++..... ...+ ..+. +...|+.+-. ++.+.-..+.++...+++..-..
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~---~~~p-~v~yl~~~~peil~~L~~gy~---~~dial~~g~mlRec~k~e~l~~~i 160 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGS---RSPP-TVDYLERHRPEILDILLRGYE---NPDIALNCGDMLRECIKHESLAKII 160 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTT---B--H-HHHHHHT--THHHHHHHHGGG---STTTHHHHHHHHHHHTTSHHHHHHH
T ss_pred CCCcccccHHHHHHHHHhhccCC---CCCc-hHHHHHhCCHHHHHHHHHHhc---CccccchHHHHHHHHHhhHHHHHHH
Confidence 45677888888888887764211 1101 1222 2233333333 34444455555555554320000
Q ss_pred CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhh----hhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 002465 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY----IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~----~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (919)
-+++.+-.+.+.++.++-++...|+..+..+... ..+.+..+.+.++..+.++|.++ +.-+|..+++.|+.++..
T Consensus 161 L~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 161 LYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHHS
T ss_pred hCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHHc
Confidence 0122333466777888878877888888776543 23445668889999999999997 999999999999999964
Q ss_pred hcCcchhhHHhhh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 002465 216 LTSSADRDRFQDL--LPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (919)
Q Consensus 216 ~~~~~~~~~~~~~--~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 261 (919)
-.+ ......+ =|.-+..+..++++....++.+|+-++--++.+
T Consensus 240 r~n---~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 240 RSN---FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GGG---HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhH---HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 321 1111122 145566777777888899999999888877754
No 319
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=77.20 E-value=4.6 Score=39.73 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
+.+.+.+.++++|++.-.|.+++..+...... ...+.++..+...+.|++..||.+..|+|..++...++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 56777888899888866666666554333332 5567788888888999999999999999999987655443
No 320
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=75.82 E-value=1.6e+02 Score=34.10 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHh
Q 002465 226 QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 226 ~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
..++-.++++|..+..++-+.++..++..+..+....|+.=...+..+++. + .+....+...|--.|..+..
T Consensus 299 K~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNK----l--GDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 299 KILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNK----L--GDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHh----c--CCcchhhhhhHHHHHHHHHh
Confidence 344556777888777777888999999999999988887655544444443 2 24455566666555655555
No 321
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.56 E-value=15 Score=33.97 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=81.2
Q ss_pred ccchHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhH--HHHHHHHHhhCC--C
Q 002465 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 429 (919)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~l~~~l~~~l~--d 429 (919)
.+..+.-++..+-...+ +.+...+.+++...+...+......++.++..+-.+.++.....+ +.+++.+.+... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 45555555555443333 455566677777777665555677777777777777776443322 345566666555 6
Q ss_pred CCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChH-HHHHHHHHHHH
Q 002465 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 487 (919)
Q Consensus 430 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~-v~~~a~~al~~ 487 (919)
.+..+..+++.+|+.-+.. ...........++.|-+.++..++.. +|..|+-.|..
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7888899999998876643 22223456677788888885425555 78777776654
No 322
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.29 E-value=1.6e+02 Score=33.71 Aligned_cols=109 Identities=6% Similarity=0.077 Sum_probs=83.5
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC--------CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh
Q 002465 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (919)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~--------~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~ 177 (919)
+.+...|.+ .+-.+|..+.++.+.++.+....+ ....++..+.+-+++..|-.|..|+.++..++..-..
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk- 379 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK- 379 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-
Confidence 344555655 477889888888888887654433 3456888888888999999999999999999875332
Q ss_pred ccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhc
Q 002465 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (919)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (919)
+...-..+.......++|. +..||..|++.++.++...|
T Consensus 380 ~~~~r~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 380 TVGRRHEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccchHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 2234567888888999997 89999999999999886644
No 323
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=74.95 E-value=82 Score=30.32 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhH
Q 002465 396 AALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (919)
Q Consensus 396 aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~ 453 (919)
-.+..++.+.+.++....+.+..++..+.+.-.+++...|..+-.++|.....+||+.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 3455556666666655557777888888777777778889999999999999999854
No 324
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=74.22 E-value=8.9 Score=29.70 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhHH--HHHHHHHhhC-CCCCHhHHHHHHHHHHHhhhhh
Q 002465 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 393 ~r~aal~~l~~i~~~~~~~~~~~l~--~l~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
.+++++.++|.++..... .++++ .+++.+++.. +.+...+|..|+.+|+-++...
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468899999999875332 13333 5777777765 5788999999999999998753
No 325
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.92 E-value=1.1e+02 Score=31.48 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCC-ChHHHHHHHHHHHHHHhcCCC
Q 002465 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTP 494 (919)
Q Consensus 416 l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~-~~~v~~~a~~al~~l~~~~~~ 494 (919)
++.++...... ..+|.|...++.+++-++-..+.....-+-.-.-...++.++-.| ...|+..+|+.+.++...-.
T Consensus 330 ~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~- 406 (461)
T KOG4199|consen 330 LDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA- 406 (461)
T ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh-
Confidence 44555554443 356788888888888887665543311122223334455555423 35689999999999987654
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 002465 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (919)
Q Consensus 495 ~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l 530 (919)
+.-.+.+..=++.|+......++.++..+-.++-.+
T Consensus 407 ~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 407 ENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 223466666678888877777776666655555444
No 326
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=73.58 E-value=34 Score=31.54 Aligned_cols=131 Identities=16% Similarity=0.121 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC----Ccch
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN----GWPE 143 (919)
Q Consensus 68 ~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~----~w~~ 143 (919)
..++++|..+.+++-+.+... ..+..+.+...+ +.+..+....-...+..+++.+.-....-+ .-+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~--------~~~~~~~~~~~i-~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg 86 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA--------REEFKEKISDFI-ESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG 86 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH-HHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT
T ss_pred CCCHhHHHHHHHHHHHHHHHh--------HHHHHHHHHHHH-HHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 567889999999998886331 122333333333 333323333333333444444322110000 1246
Q ss_pred hHHHHHHhhc--CCChhHHHHHHHHHHHhhhh--hhhhccccHHHHHHHHHHhhCCCCChH-HHHHHHHHHH
Q 002465 144 LLPFMFQCVS--SDSVKLQESAFLIFAQLSQY--IGDTLTPHLKHLHAVFLNCLTNSNNPD-VKIAALNAVI 210 (919)
Q Consensus 144 ll~~l~~~~~--s~~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~ 210 (919)
+++.+...+. +.+......+++++..-|.. .... ...+.++++.+..+...+.. +|..|+-.|.
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~---I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF---ISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC---CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH---HHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7778888877 67778888899999877654 2222 45667778888885543455 7777765554
No 327
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=73.16 E-value=40 Score=35.58 Aligned_cols=276 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCccCc---hhhHHHHHHHcCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHH
Q 002465 1 MAAEST---HLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMA 77 (919)
Q Consensus 1 ~~~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~R~~a 77 (919)
++.+|+ +-+.++.-.-.-+..+.+-.++-...-+-.-.++-|.+++.+ .|+.-|+.++ .+.+|.-|.+-
T Consensus 126 p~~n~~~~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~-------~FvlkLLdLF-dSEDpRERe~L 197 (457)
T KOG2085|consen 126 PSVNPTGFDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQ-------KFVLKLLDLF-DSEDPREREFL 197 (457)
T ss_pred cccCCCcCCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhH-------HHHHHHHHHh-cCCChHHHHHH
Q ss_pred HHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch-------hHHHHHH
Q 002465 78 AVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-------LLPFMFQ 150 (919)
Q Consensus 78 ~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~-------ll~~l~~ 150 (919)
-..|.+...+ +...-+-.+..+-+.+++-+-. ..+.. .+++.+..+.+..-+ -..|. +...|+.
T Consensus 198 KT~LhrIygK-----fl~~r~firk~iNNif~~FIyE-te~hn--GIaELLEIlgSiIng-fAlPlKEEhkiFL~rvLip 268 (457)
T KOG2085|consen 198 KTILHRIYGK-----FLVHRPFIRKSINNIFLRFIYE-TERHN--GIAELLEILGSIING-FALPLKEEHKLFLVRVLIP 268 (457)
T ss_pred HHHHHHHHHH-----HhhhHHHHHHhhcchhhhhccc-ccccC--CHHHHHHHHHHhcCc-ccCcchhHHHHHHHHhhhc
Q ss_pred hhcC-CChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhH
Q 002465 151 CVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (919)
Q Consensus 151 ~~~s-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 229 (919)
+-+. .-......--.|+.++.+.-+.- .+.++.-+++.--.. +..-...-+.-+..+++.+ ....|+..+
T Consensus 269 Lhk~k~l~~yh~QLaYcivQfveKd~kl----~~~VIrglLK~WP~t-nS~KEVmFL~ElEEILe~i----ep~eFqk~~ 339 (457)
T KOG2085|consen 269 LHKPKSLSLYHKQLAYCIVQFVEKDPKL----TETVIRGLLKYWPKT-NSSKEVMFLNELEEILEVI----EPSEFQKIM 339 (457)
T ss_pred cccCCCccccccccceeeeeeeccCccc----cHHHHHHHHHhcCCC-CCcceeeeHhhHHHHHHhc----CHHHHHHHh
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH--HccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHh
Q 002465 230 PLMMRTLTESLNNGNEATAQEALELLIEL--AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 230 p~il~~l~~~l~~~~~~~~~~a~~~l~~l--~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
..+...+..+++++...+...|+..+..= .........-.++.+++.+...... +.+..+...++..+..+.+
T Consensus 340 ~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~-hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 340 VPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKS-HWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 328
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=72.33 E-value=1.8e+02 Score=33.10 Aligned_cols=178 Identities=12% Similarity=0.151 Sum_probs=94.9
Q ss_pred HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcc--CC-CChHHHHHHHHHHHHHHh
Q 002465 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD--DF-QNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~--d~-~~~~v~~~a~~al~~l~~ 490 (919)
..+..++..++..-...+..+|..|+.+|..++....+.+..+.+....-..+.... .. .-+.+ .---.++..+
T Consensus 278 k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i-~Fl~~slvEL-- 354 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLI-NFLQNSLVEL-- 354 (661)
T ss_pred HHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchh-HHHHHHHHHH--
Confidence 445566666665555567789999999999998877765433333333333333221 10 01111 1111122222
Q ss_pred cCCCccc------cCcHHHHHHHHHHHhhcCChhHHHHH--------HHH-HHHHHHh--hHHHHHHhHhhhhHHHHHHH
Q 002465 491 NCTPEIL------TPYLDGIVSKLLVLLQNGKQMVQEGA--------LTA-LASVADS--SQEHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 491 ~~~~~~l------~~~l~~i~~~L~~~l~~~~~~v~~~~--------l~a-l~~l~~~--~~~~~~~~~~~i~~~l~~~l 553 (919)
++.+.- --|+.++--.|-+.+...+..-...+ +.. +..|+.. ....+.|..-.+++.+..++
T Consensus 355 -~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~Gvi 433 (661)
T KOG2256|consen 355 -LGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVI 433 (661)
T ss_pred -hccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHh
Confidence 221111 13455555555555554443221111 111 1222211 22345555556666666666
Q ss_pred hhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 002465 554 VNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 554 ~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (919)
.-...+....+|-.++..|..++++.| .|.|..+-+++++-.
T Consensus 434 rLipT~qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 434 RLIPTPQYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred hhcCcccchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 655667788899999999999988877 577877777776654
No 329
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.05 E-value=75 Score=29.68 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCcch----hhHHhhhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHH
Q 002465 199 PDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDV 273 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~~-p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~l 273 (919)
...|.-+++.+..+++....... ...+...+ ..+...+...+.+.++.+...+++++..+...+...+...+..+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777666664321100 00111111 23333333334445688889999999999988777777777777
Q ss_pred HHHHHH-hhcCCCcChhHHHHHHHHHHHHHh
Q 002465 274 VGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (919)
Q Consensus 274 i~~ll~-~~~~~~~~~~vr~~al~~l~~l~~ 303 (919)
+..++. +++.+......|..+++++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777766 555433334578889999999998
No 330
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=70.91 E-value=1.2e+02 Score=30.39 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred Ccch-hHHHHHHhhcCC-ChhHHHHHHHHHHHhhhhhhhhccccH--HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 002465 140 GWPE-LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (919)
Q Consensus 140 ~w~~-ll~~l~~~~~s~-~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (919)
..|- +.|++-...++. -...|..++-++|.+++.-..+...++ ..++|..+..|+.+ +.-.|..|...+..++..
T Consensus 91 ~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 91 HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 4444 446663333321 346889999999999986544433322 36889999999886 777777787777777653
No 331
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=70.65 E-value=23 Score=33.99 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHH
Q 002465 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (919)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~ 439 (919)
..+.++.++..-...|.+++......++.+ |..|.+....+...-+. .....+++.+-..++|.+..|+.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 445566655434566667766644555555 55555555554443322 33346888888889999999999999
Q ss_pred HHHHHhhhhhc
Q 002465 440 NAIGQLSTDLG 450 (919)
Q Consensus 440 ~~L~~l~~~~~ 450 (919)
|+|.+++.+.+
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999998543
No 332
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.73 E-value=19 Score=34.71 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=48.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchh
Q 002465 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (919)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~ 452 (919)
+.+.....|++.-.|.++...+...... ..+.+.+++.+...+.|++..||.+..|+|..++...+..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~ 175 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPER 175 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 5667788888755555554444333222 2467788888888889999999999999999998775443
No 333
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=69.73 E-value=31 Score=34.28 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=40.2
Q ss_pred hHhHHHHHHHHHHHHHhcccCCC----CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 002465 117 AKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (919)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~~----~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~ 172 (919)
-..+|-..-.+|+.+++.+-++- -..+++|.....+..++...+..|..++..+..
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 45688888888998888542210 135888999999888888888888888887764
No 334
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=69.63 E-value=2.1e+02 Score=32.77 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHHHHHhhc-chHhHHHHHHHHHHHHHhc-------ccCCCCcchhHHHHH----HhhcCCChhHHHHHHHHHHHhhhh-
Q 002465 107 MLLQSIQLE-SAKSISKKLCDTVSELASN-------ILPENGWPELLPFMF----QCVSSDSVKLQESAFLIFAQLSQY- 173 (919)
Q Consensus 107 ~ll~~l~~e-~~~~vr~~~~~~i~~i~~~-------~~~~~~w~~ll~~l~----~~~~s~~~~~r~~al~~l~~l~~~- 173 (919)
.+-+.+... ....++++.|+++..+... +.....|.+.+..+. +++.. +.+...++-+...+.-.
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS 210 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVS 210 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcC
Confidence 334444443 3556999999988877643 222347877665554 44433 44555566665544333
Q ss_pred hhhhccccHH-HHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 002465 174 IGDTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 174 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (919)
-++.|..++. .++..+..-+++. ..|..++.++..++=
T Consensus 211 ~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlW 249 (552)
T PF14222_consen 211 PKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLW 249 (552)
T ss_pred cHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHH
Confidence 3345666777 5777777777764 778889999887763
No 335
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=69.35 E-value=44 Score=31.04 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHH
Q 002465 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (919)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l 112 (919)
.+...+++|.+.|..+..-+|.. .+++|.. =.++.+|++|.-.|++. +++......-.|+++|
T Consensus 58 ~~~~e~~e~~~lL~~W~~i~~~~----aLeLL~~~f~~~~VR~yAV~~L~~~------------sd~eL~~yL~QLVQaL 121 (166)
T cd00870 58 SDEQEVKQALELMPKWAKIDIED----ALELLSPYFTNPVVRKYAVSRLKLA------------SDEELLLYLLQLVQAL 121 (166)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHH----HHHHcCccCCCHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHH
Confidence 35566777777777776544433 3444443 34678888888888752 2444445555667777
Q ss_pred hhcc
Q 002465 113 QLES 116 (919)
Q Consensus 113 ~~e~ 116 (919)
+-|.
T Consensus 122 KyE~ 125 (166)
T cd00870 122 KYEN 125 (166)
T ss_pred Hhcc
Confidence 7664
No 336
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.31 E-value=7.7 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002465 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (919)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (919)
++.+.+.-+.-+ ..+.+...+...+.|+ ++.||.+|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 444444433322 2457888999999998 999999998753
No 337
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=69.12 E-value=2.3e+02 Score=33.51 Aligned_cols=141 Identities=15% Similarity=0.230 Sum_probs=73.4
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC--
Q 002465 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE-- 262 (919)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-- 262 (919)
+.....+-+.......| .-|+.++..++.... +....+...++..+..++.+.+++.+.-++.+|..++...
T Consensus 57 L~~R~~kdl~~~r~~~v-~Iamea~~kLL~~C~-----eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d 130 (819)
T KOG1877|consen 57 LEERCYKDLRRERFGSV-KIAMEAYDKLLQACK-----EQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEED 130 (819)
T ss_pred HHHHHHHHHHhccCcch-hhHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhccc
Confidence 33444444544422222 335666666666542 2223344478888888888888888888999999888544
Q ss_pred -cHHHHHhHHHHHHHHHHhh---cCCCcChhHHHHHHHHHHHHHhhh---cccchhhhcchhhHHHHHHHHHHhhcCCC
Q 002465 263 -PRFLRRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAEAR---ERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (919)
Q Consensus 263 -~~~~~~~~~~li~~ll~~~---~~~~~~~~vr~~al~~l~~l~~~~---~~~~~~~~~~~~~~~~li~~l~~~l~~~~ 334 (919)
|.+... .+.++..+.++. .+.+....+|...+..+..++... .-....++ ..+...++|.+...+...+
T Consensus 131 ~~sy~~~-yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e--~~h~d~ivpsl~~~l~~~e 206 (819)
T KOG1877|consen 131 GPSYHRN-YDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWE--PQHMDKIVPSLLFELQSIE 206 (819)
T ss_pred Cchhhhh-hHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhh--hhhhccchhhHHHhhcchh
Confidence 233322 223333333332 222233445666666655554421 01111111 1236677887776665543
No 338
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.75 E-value=7.4 Score=25.75 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=25.1
Q ss_pred hhHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 460 ~ll~~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
..++.+++.+.. +++.++..++++|.+++
T Consensus 12 g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKS-EDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHc
Confidence 478888888887 78999999999999875
No 339
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=68.48 E-value=1.7e+02 Score=31.20 Aligned_cols=117 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHH
Q 002465 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (919)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~l 277 (919)
..++....+.+|..++.+...- .... + ..+++.+...+.+ .....|+.+|.-.+-..|..+.+.++.++..+
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~~-~k~~-q---d~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kL 281 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSHF-SKQE-Q---DEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKL 281 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHhH-H---HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3567778888888888874311 1111 1 1455666555544 23456666666555556788888888888766
Q ss_pred HHhhcCCCcChhHHHHHHHHHHHHHhhhcccc-hhhhc-chhhHHHHHHHHHHhh
Q 002465 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAP-GMMRK-LPQFINRLFAILMSML 330 (919)
Q Consensus 278 l~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~-~~~~~-~~~~~~~li~~l~~~l 330 (919)
-++.. ...+..-.+|++..++. .| ..... .......++.++++++
T Consensus 282 s~i~t----t~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 282 SKIST----TPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred Hhhcc----chhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 55442 34456678999999999 56 44443 2345667777777765
No 340
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.81 E-value=16 Score=28.41 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhc
Q 002465 435 RWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~~--~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~ 491 (919)
..+|+|++|.++..-.. -.++ ..+++.+++.....+...+|..|+.+|.-+...
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 56899999999874221 2333 379999999877657889999999999887654
No 341
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=67.75 E-value=25 Score=32.16 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=60.1
Q ss_pred chhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHH
Q 002465 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (919)
Q Consensus 562 ~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll 640 (919)
..+-..+++|+-.++..+....|+|.+-++++.... +-...........-.....+..+...++.-|.||...++....
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~ 114 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAV 114 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888888888999999999988754 2211111111233455667788888899999999999999988
Q ss_pred Hhccc
Q 002465 641 QSAQL 645 (919)
Q Consensus 641 ~~~~~ 645 (919)
+.++.
T Consensus 115 ~~L~~ 119 (153)
T PF08146_consen 115 DLLKQ 119 (153)
T ss_pred HHHHH
Confidence 88753
No 342
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=66.62 E-value=50 Score=30.85 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHH
Q 002465 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRK 83 (919)
Q Consensus 21 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~ 83 (919)
+..+..++.+.--.+.+.+++|.+.|..+..-+|.. -+++|.. =.++.+|++|.-.|++
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~ 97 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEK 97 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHh
Confidence 444444554444445555555555555554433322 2233322 2345566666655544
No 343
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.08 E-value=85 Score=34.64 Aligned_cols=114 Identities=11% Similarity=0.178 Sum_probs=78.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh-hhhh
Q 002465 383 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQV 461 (919)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~l 461 (919)
...+..+||..-..-+..+..-- ..-+..+..|.+.+++.++.|+..|+..|-.+++.|+..+-... -..+
T Consensus 11 ~~~l~~pDWa~NleIcD~IN~~~--------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 11 SESLAEPDWALNLEICDLINSTE--------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred cccccCccHHHHHHHHHHHhcCc--------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566788854333222221111 22347788899999999999999999999999999998763222 3577
Q ss_pred HHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCCccccCcHHHHHH
Q 002465 462 LPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (919)
Q Consensus 462 l~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~ 506 (919)
++..++..... ....||..+...|...-+.++. ...|++....
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~--~~~~~~~~~~ 126 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG--PDGYLPDYYQ 126 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC--CCCcchhHHH
Confidence 88888888775 5678999999999998888764 1245544433
No 344
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=65.89 E-value=91 Score=27.14 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=53.0
Q ss_pred HhHHHHHHHHHhhCC-CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 414 ~~l~~l~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
.+++.++|.+..++. ...+..|.++...++.++...+=. .+.+..++..+++.... ... ...+..++..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 467789999999998 778999999999999999764321 34455566666655554 222 466777788887665
No 345
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=65.75 E-value=45 Score=42.73 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=79.5
Q ss_pred HHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002465 409 AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (919)
Q Consensus 409 ~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l 488 (919)
...+..|++.++...-..+..+++.|+.-+......+...+.. -+-.+++..|+..+.+ .+..-...|...|..+
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~s-g~~~ev~~aL~vL~~L 500 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGS-GNSQEVDAALDVLCEL 500 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 3455678888888888888999999999998888888877743 2346788888888766 4444446888888888
Q ss_pred HhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 002465 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (919)
Q Consensus 489 ~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~ 534 (919)
+...+ +.+.||. .++..++..+.+-+..--..++..++.++...
T Consensus 501 ~~~~~-~~l~~fa-~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 501 AEKNP-SELQPFA-TFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHH-H-HHHHHTH-HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HhccH-HHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 87654 4566664 34455556666555333345677777777543
No 346
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.91 E-value=2.1e+02 Score=30.91 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH----hHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcc
Q 002465 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (919)
Q Consensus 232 il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~----~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~ 307 (919)
+.+.++..+-+++..+|..++.++-.++.... .+.. +++.++- ..+......+.=|.+|+.++..+.+.+.
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii---~SL~~~~~~~~ER~QALkliR~~l~~~~- 100 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFII---RSLDRDNKNDVEREQALKLIRAFLEIKK- 100 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhH---hhhcccCCChHHHHHHHHHHHHHHHhcC-
Confidence 33333333334458899999999988876542 2222 2223322 2222222334458999999999999521
Q ss_pred cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCcccchHHHHHHHHHHHcCCCcchH-HHHHHHHHhh
Q 002465 308 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP-VASEQLPAYL 386 (919)
Q Consensus 308 ~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~~l 386 (919)
++ +. +-..++..++...... ++..+.++.+++..++-.-| +-+.. .-+..+...+
T Consensus 101 ~~---~~---~~~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 101 GP---KE---IPRGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRAL 156 (371)
T ss_pred Cc---cc---CCHHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHHH
Confidence 11 11 2233444444332221 22355666666655554332 11100 0112222233
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcHH--HHH--HhHHHHHHHHHhh----CCCCCH-hHHHHHHHHHHHhhhhhchhHHhhh
Q 002465 387 AAPEWQKHHAALIALAQIAEGCAK--VMV--KNLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQNQF 457 (919)
Q Consensus 387 ~~~~~~~r~aal~~l~~i~~~~~~--~~~--~~l~~l~~~l~~~----l~d~~~-~vr~~a~~~L~~l~~~~~~~~~~~~ 457 (919)
.+.....-.+.+.++-.+.+.... .+. -.++.++...... .++.+. ..-..+..++..+....+.-+.-..
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 333333445555555555544322 111 1233444433332 222221 1233444555555554433220001
Q ss_pred h-hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhc
Q 002465 458 H-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 458 ~-~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~ 491 (919)
. -.-+..++..|.- +++.+|......+-.++..
T Consensus 237 ~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred CCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCC
Confidence 1 1577888888888 8888998888887777754
No 347
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=64.19 E-value=57 Score=29.84 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCH
Q 002465 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (919)
Q Consensus 20 d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~ 98 (919)
++..+..++..+--.+.+.++++.+.|..+..-+|.. .+++|.. -.++.+|++|.-.|++ .+.
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~----aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED----ALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 4566777777776678888888888888876544433 3444443 3568899999988866 234
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 002465 99 HTQSSLKSMLLQSIQLES 116 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~ 116 (919)
+......-.|+++|+-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 455555567778877654
No 348
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=63.99 E-value=94 Score=28.48 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcC---ChhH-HHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHH
Q 002465 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG---KQMV-QEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (919)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~---~~~v-~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~ 551 (919)
.+-..+..++..++-.+....++|.+-.+++.-..-+... .... +-.....+..++...+.-|.||+..+++....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777776778888888887766544332 1222 23345677788889999999999999999999
Q ss_pred HHhhc
Q 002465 552 ILVNA 556 (919)
Q Consensus 552 ~l~~~ 556 (919)
+|...
T Consensus 116 ~L~~~ 120 (153)
T PF08146_consen 116 LLKQF 120 (153)
T ss_pred HHHHh
Confidence 88664
No 349
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=63.21 E-value=4.1e+02 Score=33.81 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH-HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhh
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~ 449 (919)
++..+.+.|.+....+--.++-.|-.++..+++...-..+ .-++.+...+...|..+-..+..+|-++..+-
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4445555666666555555555555555555543222222 24677777888888888888888887776544
No 350
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=62.73 E-value=3.4e+02 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.329 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 002465 766 DFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI 819 (919)
Q Consensus 766 ~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l 819 (919)
..++..+++++..+.|.++..-++..+-+.++.-.-..+ ..+.++...+..++
T Consensus 648 ~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~-~~i~~l~~~Lcs~~ 700 (1697)
T KOG3687|consen 648 SLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFT-SSVDQLCSALCSML 700 (1697)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcC-CcHHHHHHHHHHHH
Confidence 345667788888888988887777777766654322222 23445555555443
No 351
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=62.67 E-value=1e+02 Score=28.79 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHhcHHHHH----------HhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 002465 390 EWQKHHAALIALAQIAEGCAKVMV----------KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~~~~~----------~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~ 459 (919)
+...|.-++..+..+.+..+..+. -.-..+.+.+++.+..+++.+-..++..+..+...+...+ ..-..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele 113 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELE 113 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344555566666666655554333 1123567777777766668888888999888888777666 45566
Q ss_pred hhHHHHHh-hccCCCC--hHHHHHHHHHHHHHHhc
Q 002465 460 QVLPALAG-AMDDFQN--PRVQAHAASAVLNFSEN 491 (919)
Q Consensus 460 ~ll~~l~~-~l~d~~~--~~v~~~a~~al~~l~~~ 491 (919)
.+++.++. .+.. ++ ...|..+..++..++..
T Consensus 114 ~~l~~i~~~il~~-~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILES-DNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHhC
Confidence 77777666 4443 33 35667778888887753
No 352
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=62.32 E-value=1.7e+02 Score=29.18 Aligned_cols=127 Identities=14% Similarity=0.268 Sum_probs=73.4
Q ss_pred hCCCCChHHHHHHHHHHHHHHHh----hcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccC------
Q 002465 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (919)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~------ 262 (919)
++|+ ++.|...++.|...+... +......+..-..+..+-+.+...+.+.++.++..|++.+..++-..
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4565 788888888877766553 21111111112222333334444566778889999988887665221
Q ss_pred ------------------------cHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhh
Q 002465 263 ------------------------PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (919)
Q Consensus 263 ------------------------~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~ 318 (919)
+..+..--..+++.++..+.....+..+-...+..|..+++. -+.+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~----------RP~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ----------RPQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH----------SGGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH----------hhHH
Confidence 012333344677788887766554566666677777777772 2467
Q ss_pred HHHHHHHHHHhh
Q 002465 319 INRLFAILMSML 330 (919)
Q Consensus 319 ~~~li~~l~~~l 330 (919)
...+++.+..+-
T Consensus 151 ~~~Il~~ll~~~ 162 (239)
T PF11935_consen 151 MSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 788888887653
No 353
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=61.66 E-value=18 Score=29.41 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHH
Q 002465 687 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (919)
Q Consensus 687 ~k~~a~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (919)
.|..|+-.|+.++.+.+-.+-||++.++..|.+...+ ...|+.++-.+|..+-+.-
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~--~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND--PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS---SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhC
Confidence 4778888999999999999999999999999888775 5688998888888877653
No 354
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=61.63 E-value=41 Score=31.98 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCHHH
Q 002465 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (919)
Q Consensus 22 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~ 100 (919)
..+..++..+--.+++..+++.+.|..+..-+|.. .+++|.. =+++.+|++|.-.|++ ++++.
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L~~------------~~d~~ 108 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRLES------------LSDEE 108 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHHCT------------S-HHH
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHHHH------------cCchH
Confidence 44444454433345566677777777776634432 3444433 2347788888777643 34555
Q ss_pred HHHHHHHHHHHHhhc
Q 002465 101 QSSLKSMLLQSIQLE 115 (919)
Q Consensus 101 ~~~ik~~ll~~l~~e 115 (919)
.......|+++|.-|
T Consensus 109 l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 109 LLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHheec
Confidence 666666777777765
No 355
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=61.24 E-value=4.5e+02 Score=33.55 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
..+..+++.|+..+--|...+|-+|-+|+...+.+-+--+-...++.+.+.+.+ .+.-+...++.+|.+++..-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 467788888888888888888888888876654432111234567888888888 78888889999999988643
No 356
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=60.45 E-value=1.3e+02 Score=33.32 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHc---CCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhH-HHHHHHHHhhCCCCCH
Q 002465 357 VGQECLDRLAIAL---GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHP 432 (919)
Q Consensus 357 ~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~l~~~l~~~l~d~~~ 432 (919)
++..+|..+++.+ ...-.-..+.+.+.+.+++|+..+...+..++....-.+...-..++ ..++..+...+...+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 4556666666543 11111223445555667777666555544443332222222112233 3466777776666677
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-----ccccCcH--HHH
Q 002465 433 RVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----EILTPYL--DGI 504 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-----~~l~~~l--~~i 504 (919)
..|..+.|.+-.+.-.+....+-++ ...-+..++...+| +...|+..+...|.+|.-+..+ +.+.... .-+
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8899999999988877765432223 34556778888999 9999999999999998753322 1111111 124
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 002465 505 VSKLLVLLQNGKQMVQEGALTALASVADS 533 (919)
Q Consensus 505 ~~~L~~~l~~~~~~v~~~~l~al~~l~~~ 533 (919)
...|...+...++-.-...+..+-.++.+
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~ 595 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAAC 595 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence 55566666666654433334444444433
No 357
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.30 E-value=98 Score=34.19 Aligned_cols=95 Identities=21% Similarity=0.111 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH--hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHh
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~ 577 (919)
.....+..|.+.+++.++.++..||..|..++..||..|-..+ ..+++-+..+..+.. ....+|.+++..|-....
T Consensus 35 ~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~--~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 35 GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKP--RDLKVREKILELIDTWQQ 112 (470)
T ss_pred CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCC--cchhHHHHHHHHHHHHHH
Confidence 3447888899999988899999999999999999998875322 355555555554321 455689999999999888
Q ss_pred hhCh-hhhhhhHHHHHHHHH
Q 002465 578 AVGK-DKFRDDAKQVMEVLM 596 (919)
Q Consensus 578 ~~~~-~~~~~~~~~i~~~l~ 596 (919)
+++. ....|.+..++..+.
T Consensus 113 af~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 113 AFCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred HccCCCCcchhHHHHHHHHH
Confidence 8874 444455555555443
No 358
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=59.89 E-value=1.3e+02 Score=27.03 Aligned_cols=81 Identities=15% Similarity=0.303 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcc
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (919)
Q Consensus 417 ~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~ 496 (919)
+.+-..+...|.++++.|+..|+.||..+-. +.+ .+|- ..+.+.++| ...|.. |..|.-.-+...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l-~pY~----d~L~~Lldd---~~frde----L~~f~~~~~~~~ 80 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYL-TPYK----DNLENLLDD---KTFRDE----LTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHH-HhHH----HHHHHHcCc---chHHHH----HHhhcccCCcCC
Confidence 3455666678899999999999999987543 222 3343 344455555 344433 444443222122
Q ss_pred c-cCcHHHHHHHHHHHh
Q 002465 497 L-TPYLDGIVSKLLVLL 512 (919)
Q Consensus 497 l-~~~l~~i~~~L~~~l 512 (919)
+ ..+-+.+++.++.++
T Consensus 81 I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCHHHHhHHHHHHHHHH
Confidence 2 245666666666654
No 359
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.49 E-value=1.3e+02 Score=31.65 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH--HHHHHHHhhCC-CCCHhHHHHHHHHHHHhhhhhch
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGP 451 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~l~~~l~~~l~-d~~~~vr~~a~~~L~~l~~~~~~ 451 (919)
...+..+.+-+++.++++-.-|+..+++++..|++.+...+. .....+...+. ..+++|+......+-++++.+..
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 446777778889999999999999999999999986553322 23334444444 56899999888888888876654
No 360
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=58.97 E-value=2e+02 Score=28.77 Aligned_cols=121 Identities=19% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCCCCHhHHHHHHHHHHHhhhhh------chhHHhh---hhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCc--
Q 002465 427 FRDPHPRVRWAAINAIGQLSTDL------GPDLQNQ---FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-- 495 (919)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~------~~~~~~~---~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~-- 495 (919)
++|+++.|...++.+.+.+-... .+.. .. .+..+=..+++.+.+ .++.||..|..++..++-...+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~-~~~W~~~~~lK~~Il~~~~~-~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSD-EQLWESMNELKDRILSLWDS-ENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHH-HHHHHHHHHHHHHHHHGGGS-SSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhcCCCCC
Confidence 67888888888887766544321 1111 11 234455567777777 78999999999999887422110
Q ss_pred ---------------cc---cCc---------HHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhHHHHHHhHhhhh
Q 002465 496 ---------------IL---TPY---------LDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVM 546 (919)
Q Consensus 496 ---------------~l---~~~---------l~~i~~~L~~~l~~~~--~~v~~~~l~al~~l~~~~~~~~~~~~~~i~ 546 (919)
.+ .|+ -..+++.|+..+.+.. ..+-..++.+++.++..=+ .|++.++
T Consensus 80 ~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il 155 (239)
T PF11935_consen 80 DSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRIL 155 (239)
T ss_dssp TS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHH
T ss_pred CCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHH
Confidence 00 122 2346778888887765 5555566666666665433 3677888
Q ss_pred HHHHHHH
Q 002465 547 PFLKAIL 553 (919)
Q Consensus 547 ~~l~~~l 553 (919)
+.+...-
T Consensus 156 ~~ll~~~ 162 (239)
T PF11935_consen 156 PALLSFN 162 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 8887764
No 361
>PF14961 BROMI: Broad-minded protein
Probab=58.65 E-value=4.5e+02 Score=32.74 Aligned_cols=135 Identities=13% Similarity=0.206 Sum_probs=82.8
Q ss_pred HHHHHhhcCCCh-hHHHHHHHHHHHhhhhhhhhcc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhh
Q 002465 146 PFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (919)
Q Consensus 146 ~~l~~~~~s~~~-~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (919)
..+.+.+....| ++|..|+..|..+... +-+. +.|+.+...+..+|.|+ ++.+...+++........-+-...++
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~S--DVls~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~trE 240 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPS--DVLSCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMTRE 240 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChh--hccccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhhHH
Confidence 444555554444 7888888888766432 1111 37999999999999998 99999999999888887654333344
Q ss_pred HHhhhHHHHHHHHHH----------HHhcCCh--HHHHHHHHHHHHHHccCcH----HHHHhHHHHHHHHHHhhcC
Q 002465 224 RFQDLLPLMMRTLTE----------SLNNGNE--ATAQEALELLIELAGTEPR----FLRRQLVDVVGSMLQIAEA 283 (919)
Q Consensus 224 ~~~~~~p~il~~l~~----------~l~~~~~--~~~~~a~~~l~~l~~~~~~----~~~~~~~~li~~ll~~~~~ 283 (919)
.+..++..+-..+.. .+.-..+ ...-..+..+.++-...|+ +-.+++.++++..+.+++.
T Consensus 241 iYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 241 IYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 444443333222211 0111111 2233456666666554554 3357788889888888754
No 362
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=58.42 E-value=1.6e+02 Score=29.00 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=52.7
Q ss_pred CcchhH-HHHHHhhcC-CChhHHHHHHHHHHHhhhhhhhhcccc--HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 002465 140 GWPELL-PFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (919)
Q Consensus 140 ~w~~ll-~~l~~~~~s-~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (919)
..|-++ |++-...++ +..-.|..++-+++.+++....++..+ ...++|.++..+..+ +...+..|...+..++.
T Consensus 120 ~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 120 HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILL 197 (293)
T ss_pred cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhh
Confidence 455544 444443333 456789999999999998766554332 357899999999987 77788888888777764
No 363
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.50 E-value=4.6e+02 Score=32.52 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=50.7
Q ss_pred hhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCC-------ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 002465 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-------EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (919)
Q Consensus 458 ~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~-------~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~ 529 (919)
++.....+...++. ....|+..+|..+..++..+.. ....||...++..+...+.+..+..+..-..+++.
T Consensus 548 Lkt~~~~L~efmhe-~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~~~q~~~~~~al~~ 625 (1041)
T KOG2020|consen 548 LKTVVHKLFEFMHE-THEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQPQQRHTFYEALGL 625 (1041)
T ss_pred HHHHHHHHHHHHhh-hhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCchHHHHHHHHHHHHH
Confidence 44444566666666 6667888898887777765432 23457888888888888888888778888888883
No 364
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=57.41 E-value=3.4e+02 Score=31.02 Aligned_cols=182 Identities=12% Similarity=0.205 Sum_probs=91.5
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHh--hcCC-----hhHHHHHHHHHH
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL--QNGK-----QMVQEGALTALA 528 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l--~~~~-----~~v~~~~l~al~ 528 (919)
.....++..++..=.. ....+|..|..++..++.......+.+.+....-..+.-- .+.+ ...+..+...++
T Consensus 278 k~lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ 356 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLG 356 (661)
T ss_pred HHHHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhc
Confidence 3455555555554444 5678889999999988887765544443333322222211 1111 122333333333
Q ss_pred HHHHhhHHHHHHhHhhhhHHHHHHHhhcCCcccchh-hhHHHHHHH----HHHhhh-ChhhhhhhHHHHHHHHHHHhcCC
Q 002465 529 SVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRML-RAKSMECIS----LVGMAV-GKDKFRDDAKQVMEVLMSLQGSQ 602 (919)
Q Consensus 529 ~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~l-r~~ai~~l~----~l~~~~-~~~~~~~~~~~i~~~l~~l~~~~ 602 (919)
.=...+-.+---|+.++--.|.+.+...+.++...+ -.+-+.|+- .|+.+. +.....|.+..++++++.+..-.
T Consensus 357 ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLi 436 (661)
T KOG2256|consen 357 LDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLI 436 (661)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhc
Confidence 222222122224566666666666544322222111 112233432 233233 24456677777777776643311
Q ss_pred -CCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 002465 603 -METDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (919)
Q Consensus 603 -~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~l 639 (919)
....-|+|-+++..+..+++..|. |-|..|.++..+
T Consensus 437 pT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml 473 (661)
T KOG2256|consen 437 PTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEML 473 (661)
T ss_pred CcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHH
Confidence 122346888888888888887764 556655555444
No 365
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.33 E-value=2.2e+02 Score=28.84 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhcc-ccHHHHHHHHHHhhCCCCC
Q 002465 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNN 198 (919)
Q Consensus 120 vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~ 198 (919)
.....|..++.++.. ...+++-..+..+.+..-.. .-..+..++.++.+.+. .+..+++..+...|.++ .
T Consensus 131 ~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr~----~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~ 201 (262)
T PF14225_consen 131 ECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFRD----KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG-P 201 (262)
T ss_pred HHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-c
Confidence 445677788888753 35566666666655543311 22233444444444443 35677888889999887 7
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCc
Q 002465 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (919)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~ 263 (919)
.-+|..+++.+..++...+-. ....+.++..+.+.++.+- ..+|+++|..++...+
T Consensus 202 ~w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~t~~---~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQTDL---WMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHHhhcc
Confidence 899999999999999887532 1244456666666665433 3556666666655443
No 366
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=56.97 E-value=8.5 Score=22.99 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhh
Q 002465 434 VRWAAINAIGQLST 447 (919)
Q Consensus 434 vr~~a~~~L~~l~~ 447 (919)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999765
No 367
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=54.94 E-value=2e+02 Score=27.58 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChH--HHHHHHHHHHHHHhcC
Q 002465 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENC 492 (919)
Q Consensus 415 ~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~--v~~~a~~al~~l~~~~ 492 (919)
...+++..+++...+.--+||..|..++..+.....+.+ .+.+ -.+.+.+.+.. +... .-..+..++..++.-+
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHh
Confidence 344555555555555667899999999999884432211 1222 22344444333 1110 0122333444444434
Q ss_pred CCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhh
Q 002465 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (919)
Q Consensus 493 ~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 555 (919)
. +..|...++..|+......+..+...+..++-....... .-..-+..++..+..++++
T Consensus 80 ~---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~-~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 80 D---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS-DSPEELEQVLSDLLSILKE 138 (193)
T ss_pred c---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Confidence 3 336888888888888887777777777777766664321 1112344555555555544
No 368
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=54.15 E-value=1e+02 Score=26.49 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=49.8
Q ss_pred CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHH
Q 002465 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (919)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L 508 (919)
...+.+...+.|++.. ..+...++..+.+.+.. ..+.-+-.+...+..++.+++...-..+...+.+.+
T Consensus 16 ~S~~~I~~lt~~a~~~----------~~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f 84 (114)
T cd03562 16 NSQPSIQTLTKLAIEN----------RKHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLF 84 (114)
T ss_pred ccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3555666666666554 24666788888888777 566777889999999999887432211222223333
Q ss_pred HHHhhcCChhHHHH
Q 002465 509 LVLLQNGKQMVQEG 522 (919)
Q Consensus 509 ~~~l~~~~~~v~~~ 522 (919)
.......++.+|..
T Consensus 85 ~~~~~~~~~~~r~k 98 (114)
T cd03562 85 LDAYEKVDEKTRKK 98 (114)
T ss_pred HHHHHhCCHHHHHH
Confidence 34444444445443
No 369
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=53.80 E-value=1.7e+02 Score=26.87 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCC-CChHHHHHHHHHHHHHHhcCCC--ccccCcHHHHHHHHH
Q 002465 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLL 509 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~-~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~~i~~~L~ 509 (919)
..-..++.++..+.++---.+ +...+.++..+...+... .+..+...|...|.+++.+-+. ..+.. +--++.|.
T Consensus 32 ~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~--evt~~~Li 108 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQ--EVTLESLI 108 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhc--cCCHHHHH
Confidence 344445555555555422222 333444555555544432 2477888888889888875431 01111 11257788
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhhHH
Q 002465 510 VLLQNGKQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 510 ~~l~~~~~~v~~~~l~al~~l~~~~~~ 536 (919)
..++.+++.++..++..+.++...+++
T Consensus 109 ~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 109 RHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 888889999999999988888766654
No 370
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.81 E-value=6.1e+02 Score=32.55 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhHhhhhHHHHHHHhhc
Q 002465 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (919)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 556 (919)
|-.....++.++....+.+ +.++...++....+.....|-.++..+..+....|+...+.+++++|.|-+++++.
T Consensus 1520 v~~~li~~i~~~~~a~~~d-----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDD-----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhh-----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 4444555555544333321 44555555555566778899999999999999999999999999999999998653
Q ss_pred CCcccchhhhHHHHHHHHHHhhhC
Q 002465 557 TDKSNRMLRAKSMECISLVGMAVG 580 (919)
Q Consensus 557 ~~~~~~~lr~~ai~~l~~l~~~~~ 580 (919)
. ++ +...+-+.+..+-..+|
T Consensus 1595 ~-~~---Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1595 D-DE---VECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred H-HH---HHHHHHHHHHHHHHHhc
Confidence 2 22 33333334444444455
No 371
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=52.03 E-value=3.2e+02 Score=29.07 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHh
Q 002465 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l 512 (919)
.-+.-|...++++.++++. .....+.+-+....| .+..||..|..-|-.||.. + .++.+.+.|.++|
T Consensus 39 k~k~lasq~ip~~fk~fp~-----la~~a~da~~d~~ed-~d~~ir~qaik~lp~fc~~---d----~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS-----LADEAIDAQLDLCED-DDVGIRRQAIKGLPLFCKG---D----ALSRVNDVLVQLL 105 (460)
T ss_pred HHHHHHHHHHHHHHhhCch-----hhhHHHHhhhccccc-cchhhHHHHHhccchhccC---c----hhhhhHHHHHHHH
Confidence 3455677888888888764 445667777788888 8889999999999888876 2 2444444455554
Q ss_pred h
Q 002465 513 Q 513 (919)
Q Consensus 513 ~ 513 (919)
+
T Consensus 106 n 106 (460)
T KOG2213|consen 106 N 106 (460)
T ss_pred H
Confidence 4
No 372
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=51.75 E-value=74 Score=28.45 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=50.8
Q ss_pred HhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCcc--ccCcH
Q 002465 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTPYL 501 (919)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~--l~~~l 501 (919)
++.|+-+...++.+|..+|-. ....+++.+.+++.+.+ ++-..|.....++..+++.+.... -.+|.
T Consensus 14 L~~L~aS~qSi~kaa~fAlk~----------~~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv 82 (139)
T PF12243_consen 14 LRRLNASQQSIQKAAQFALKN----------RDMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYPYV 82 (139)
T ss_pred HHHcchhHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccchhH
Confidence 334554555566666666544 23456788888888888 678889999999999988764333 44666
Q ss_pred HHHHHHHHHH
Q 002465 502 DGIVSKLLVL 511 (919)
Q Consensus 502 ~~i~~~L~~~ 511 (919)
..+-.-|..+
T Consensus 83 ~~l~~dL~~I 92 (139)
T PF12243_consen 83 SMLQRDLPRI 92 (139)
T ss_pred HHHHHHHHHH
Confidence 6554444333
No 373
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=51.51 E-value=1.3e+02 Score=28.68 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhhccCCCCcccCCCHH
Q 002465 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (919)
Q Consensus 21 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~ 99 (919)
+..+..+|.+.-=.+....+++.+.+..+..-+|.. .+++|.. -+++.+|++|.-.|++ .+.+
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~----aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d~ 106 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED----ALELLSPKFPDPFVRAYAVERLES------------ASDE 106 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH----HHHHhCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 344444443322234555666667676665534432 2333332 2467777777766644 2344
Q ss_pred HHHHHHHHHHHHHhhc
Q 002465 100 TQSSLKSMLLQSIQLE 115 (919)
Q Consensus 100 ~~~~ik~~ll~~l~~e 115 (919)
......-.|+++|+-|
T Consensus 107 ~l~~yLpQLVQaLr~E 122 (184)
T smart00145 107 ELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4455555666666655
No 374
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=50.75 E-value=3.4e+02 Score=28.98 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhcchHhHHHHHH-HHHHHHHhc-ccCCCCcchhHHHHHHhhcCCC--------------hhHHHHHHHH
Q 002465 103 SLKSMLLQSIQLESAKSISKKLC-DTVSELASN-ILPENGWPELLPFMFQCVSSDS--------------VKLQESAFLI 166 (919)
Q Consensus 103 ~ik~~ll~~l~~e~~~~vr~~~~-~~i~~i~~~-~~~~~~w~~ll~~l~~~~~s~~--------------~~~r~~al~~ 166 (919)
..-+.+++.|..|.++.|-..+- +.-..+... .+-......|...+.+.+.++. .+.....+.+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 44567788888888877654332 222222211 1111124445555555443211 1344555667
Q ss_pred HHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChH
Q 002465 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (919)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~ 246 (919)
|..++.+-..--....+.++..+..++.+. . -..++.+|.-++-.++ ......+|.++..+.+... .+.
T Consensus 221 Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~-~---a~~CI~aLtic~~EmP-----~s~~k~L~~iL~kLs~i~t--t~~ 289 (356)
T PF03542_consen 221 LSALISYHSHFSKQEQDEIVRALESGLGSK-T---AKPCIHALTICCYEMP-----DSMKKLLPSILLKLSKIST--TPN 289 (356)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHhccC-c---HHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHhhcc--chh
Confidence 777766532211225678999999888763 2 2345666666665543 4556778888887766543 445
Q ss_pred HHHHHHHHHHHHHccC----cHHHHHhHHHHHHHHHHhhc
Q 002465 247 TAQEALELLIELAGTE----PRFLRRQLVDVVGSMLQIAE 282 (919)
Q Consensus 247 ~~~~a~~~l~~l~~~~----~~~~~~~~~~li~~ll~~~~ 282 (919)
...-.++.|..++... ..+..+....++..++...+
T Consensus 290 ~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 290 MAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred hHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 6666788887776543 22334555666666666553
No 375
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=50.07 E-value=5.1e+02 Score=30.85 Aligned_cols=210 Identities=15% Similarity=0.199 Sum_probs=117.2
Q ss_pred CCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCc-cccCcHHHHH
Q 002465 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIV 505 (919)
Q Consensus 427 l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~i~ 505 (919)
+......-...|..++-++..+|...+ ..|...++..+.+.|.+ .++.++.-++.++..|+...... ...--++.++
T Consensus 65 l~~~r~~~v~Iamea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes-~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi 142 (819)
T KOG1877|consen 65 LRRERFGSVKIAMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLES-NNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFI 142 (819)
T ss_pred HHhccCcchhhHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc-CCCceeeehhhHHHHHHhhcccCchhhhhhHHHH
Confidence 333333334456667777777777776 67888899999999998 68899999999999999766432 1112256677
Q ss_pred HHHHHHhhcC-----ChhHHHHHHHHHHHHHHhh-HHHH-----H-HhHhhhhHHHHHHHhhcC------Ccc-c-----
Q 002465 506 SKLLVLLQNG-----KQMVQEGALTALASVADSS-QEHF-----Q-KYYDAVMPFLKAILVNAT------DKS-N----- 561 (919)
Q Consensus 506 ~~L~~~l~~~-----~~~v~~~~l~al~~l~~~~-~~~~-----~-~~~~~i~~~l~~~l~~~~------~~~-~----- 561 (919)
..+.++..+. ...+|..-+.++..++... -+++ . .+++.++|.+...+.... .+. .
T Consensus 143 ~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~ 222 (819)
T KOG1877|consen 143 SKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSL 222 (819)
T ss_pred HHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccc
Confidence 7777766542 2356666667776665443 2222 1 247788888776654322 000 0
Q ss_pred ------c-hhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHHhcC-Ccccch
Q 002465 562 ------R-MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-QMETDDPTTSYMLQAWARLCKCLGQ-DFLPYM 632 (919)
Q Consensus 562 ------~-~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~l 632 (919)
. .-..-+-.|+..+ +|..+|......+++.+..-.+. ..-... -.++..+|..+...+.. .-.+++
T Consensus 223 ~~a~~~~~~p~vla~~cl~~l---~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~--n~fav~~~~~vi~~iq~q~s~~v~ 297 (819)
T KOG1877|consen 223 LAAGDKTSDPKVLAERCLREL---LGRAKFGTNIRNALKPLLSHLDFHELWTPP--NGFAVHVFKIVIYLIQRQYSYFVI 297 (819)
T ss_pred cccCCcccCcchhHHHHHHHh---hccccccchHHHHHHHHHhccccceeecCC--CccchHHHHHHHHHHhhccchHHH
Confidence 0 0112234454444 44455665566666665542221 111111 13445555555554433 333455
Q ss_pred hhhhHHHHHhc
Q 002465 633 SVVMPPLLQSA 643 (919)
Q Consensus 633 ~~i~~~ll~~~ 643 (919)
..++.++....
T Consensus 298 ~~li~hLd~~~ 308 (819)
T KOG1877|consen 298 QELINHLDNKK 308 (819)
T ss_pred HHHHHHHHhhc
Confidence 56666555443
No 376
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=49.79 E-value=1.4e+02 Score=27.82 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=17.9
Q ss_pred hHhHHHHHHHHHHHHHhcccCCCCcchhHHHHHHhhc
Q 002465 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS 153 (919)
Q Consensus 117 ~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~ 153 (919)
+..||..+.+++..+.. +..-..+|.|+|.++
T Consensus 84 d~~VR~yAV~~L~~~~d-----deL~~yLpQLVQaLk 115 (169)
T cd00869 84 DQEVRAHAVQWLARLSN-----DELLDYLPQLVQALK 115 (169)
T ss_pred ChHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHH
Confidence 45566666666666433 233455555555554
No 377
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.75 E-value=6.9e+02 Score=32.25 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccc-cHHHHHHHHccccCCcC-ChHH-------HHH---HHHhHHHHHHHHHHHHHc
Q 002465 683 SVLEEKATACNMLCCYADELKEGFFP-WIDQVAPTLVPLLKFYF-HEEV-------RKA---AVSAMPELLRSAKLAIEK 750 (919)
Q Consensus 683 ~~~~~k~~a~~~l~~l~~~~~~~~~p-~~~~~~~~l~~~l~~~~-~~~v-------r~~---a~~~l~~l~~~~~~~~~~ 750 (919)
.-.+.+..|+..+-.+....|+.|.+ |-+.++..+.+.++.-. +... ... |+.++..|+..+..
T Consensus 1186 ~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~---- 1261 (1514)
T KOG0929|consen 1186 YRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFK---- 1261 (1514)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34567788999999999999999976 55788887777776421 1111 112 22222222222211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002465 751 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSS 824 (919)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~ 824 (919)
.+..++..++..+..++..+ +.........||..++...|..++....+++++.+.+..+..+.
T Consensus 1262 ---------~l~~lL~~~~~ll~~ci~~~-n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T~p 1325 (1514)
T KOG0929|consen 1262 ---------QLNNLLPKVLGLLVGCIKQD-NQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTTLP 1325 (1514)
T ss_pred ---------HHHHHHHHHHHHHHHHhcCc-chhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhcCc
Confidence 12334444444444444443 55677788999999999999999999999999998888776554
No 378
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=44.28 E-value=5.9e+02 Score=29.86 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChH----HHHHHHHHHH
Q 002465 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA----TAQEALELLI 256 (919)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~----~~~~a~~~l~ 256 (919)
++..+.+++ ..+ +.++-..+++.+..+--.-.........-.+....+..++.++...+.. ....+...|.
T Consensus 311 ~L~~i~~lL----~~~-~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~ 385 (696)
T PF14838_consen 311 HLPDIAQLL----LHS-DPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLS 385 (696)
T ss_pred HHHHHHHHH----cCC-ChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 455555544 444 6677666655544322110001122222222334444555555443222 2345666666
Q ss_pred HHHccCcHHHHHhHHHHHHHHH
Q 002465 257 ELAGTEPRFLRRQLVDVVGSML 278 (919)
Q Consensus 257 ~l~~~~~~~~~~~~~~li~~ll 278 (919)
.++...+....-.++.+++..+
T Consensus 386 ~l~~~s~~a~~~vLr~LlE~al 407 (696)
T PF14838_consen 386 RLCSYSPAARKAVLRELLEGAL 407 (696)
T ss_pred HHHccCchHHHHHHHHHHHHHH
Confidence 7766655555555555555433
No 379
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=44.06 E-value=1.3e+02 Score=26.11 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
.+..|......++..+.|++... .+...++..+.+.+.. ..+.-+-.....+..++.++.
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHh
Confidence 34455566677787777777652 3445677777777666 444556677778888887765
No 380
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=43.87 E-value=1.3e+02 Score=29.36 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (919)
|...+.+.+...|++--.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+..|+|-.++..-++.+ .
T Consensus 114 ~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V-~ 186 (208)
T cd07064 114 PEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWV-R 186 (208)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHH-H
Q ss_pred hhhhh
Q 002465 456 QFHPQ 460 (919)
Q Consensus 456 ~~~~~ 460 (919)
.|+..
T Consensus 187 ~fl~~ 191 (208)
T cd07064 187 DFVAA 191 (208)
T ss_pred HHHHH
No 381
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=43.65 E-value=4.4e+02 Score=28.26 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHH
Q 002465 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (919)
Q Consensus 500 ~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~ 538 (919)
|+.++...+-..+...+.......+.++|.++..++.-+
T Consensus 66 Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~ll 104 (373)
T PF14911_consen 66 YFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLL 104 (373)
T ss_pred HHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhh
Confidence 344443333333344566777778888898888877543
No 382
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.45 E-value=8e+02 Score=31.19 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=78.2
Q ss_pred CcchhHHHHHHhhcCC---ChhHHHHHHHHHHHhhhhhhhhcc-ccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHh
Q 002465 140 GWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~---~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (919)
.|+.++..+-...... .......++.+|.-++..+-..+. ..+..++..+...-....+.++-..|+..+-.+..+
T Consensus 880 ~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 880 GWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred ccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 4998888777665544 446667788888888765322221 244556665555544434667777777666555544
Q ss_pred hcCc-----chhh-----------------HHhhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHH
Q 002465 216 LTSS-----ADRD-----------------RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (919)
Q Consensus 216 ~~~~-----~~~~-----------------~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 268 (919)
+..+ ++.. ....+.=.++..+.++..+..+++|..|++.|-.+...++..+.+
T Consensus 960 l~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 960 LKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred HHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCCh
Confidence 3321 0000 011122245566677777888999999999999888777655544
No 383
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.19 E-value=6.6e+02 Score=30.18 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhhhhhchhHHhhhhh--hhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 433 RVRWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 433 ~vr~~a~~~L~~l~~~~~~~~~~~~~~--~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
.++......|++++..-+... ...+. .....+..++-+ ++..++.+|...|....+.-
T Consensus 496 ~~~~~~~~il~rls~~~~~~L-~~l~~d~~~~~~i~s~lfs-p~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHL-KELLSDPDAAQAIWSLLFS-PDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHH-HHHHcCcchhhHHHhheeC-CChHHHHHHHHHHHHHhcCC
Confidence 455566677777777654444 33332 666777888877 88899999999999887643
No 384
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.16 E-value=28 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHH
Q 002465 391 WQKHHAALIALAQI 404 (919)
Q Consensus 391 ~~~r~aal~~l~~i 404 (919)
|.+|+.+..+||.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 67899999999987
No 385
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=38.24 E-value=4.4e+02 Score=26.66 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHhcH-------H-HHHHhHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHhhhhhc----hhHHhh
Q 002465 390 EWQKHHAALIALAQIAEGCA-------K-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLG----PDLQNQ 456 (919)
Q Consensus 390 ~~~~r~aal~~l~~i~~~~~-------~-~~~~~l~~l~~~l~~~l-~d~~~~vr~~a~~~L~~l~~~~~----~~~~~~ 456 (919)
-|+.-+.+...++.+++.++ . .-.+.+..+-..++..| +-.|.-+-..+..++..++..+- +.+ ..
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l-~~ 138 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPEL-SE 138 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchH-HH
Confidence 46655555566666664321 0 01133444444444333 33455555555666666666543 222 23
Q ss_pred hhhhhHHHHHhhccCCCCh---HHHHHH--HHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCCh--------hHHHHH
Q 002465 457 FHPQVLPALAGAMDDFQNP---RVQAHA--ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--------MVQEGA 523 (919)
Q Consensus 457 ~~~~ll~~l~~~l~d~~~~---~v~~~a--~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~--------~v~~~~ 523 (919)
....-+..+++.+...... ..|..| -.++..++..-+... .+.++..++.|++..+.+.. ..+..+
T Consensus 139 LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~-~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 139 LPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNS-RPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred hHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 3334444555555541011 234333 234455555444221 27788889999998776542 467778
Q ss_pred HHHHHHHHHh--hHHHHHHhHhhhhHHHHHHH
Q 002465 524 LTALASVADS--SQEHFQKYYDAVMPFLKAIL 553 (919)
Q Consensus 524 l~al~~l~~~--~~~~~~~~~~~i~~~l~~~l 553 (919)
+.++..+... .+....+|+...+..-+..+
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 8888887754 44666777776665444433
No 386
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.09 E-value=2.6e+02 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=42.3
Q ss_pred CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002465 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (919)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~ 489 (919)
..+..+...++.|+-.+...-...-.--..+..+..+...+.. ++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4667788888888888776432111012357888999999988 88999999999888775
No 387
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=36.98 E-value=3.8e+02 Score=25.63 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-CCcchhHHHHHHhhcCCChh--HHHHHHHHHHHhhhhhh
Q 002465 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDSVK--LQESAFLIFAQLSQYIG 175 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~-~~w~~ll~~l~~~~~s~~~~--~r~~al~~l~~l~~~~~ 175 (919)
+....+-..+++... |+-..||..++.++..+.....+. ...| -.+.+...+...... ....+-.++..+++-+.
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 344445555555554 467889999999999998543331 1222 335555544433211 11122333333332221
Q ss_pred hhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002465 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (919)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~~~~~~~~~a~~~l 255 (919)
+..+...++.-+....... +..+...+..+|..++.... ........++..++..+.... .+..+..-.++.+
T Consensus 81 --~~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~--~~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~tl 153 (193)
T PF12612_consen 81 --LPEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELS--DSPEELEQVLSDLLSILKENL--RNDRVVVPLLKTL 153 (193)
T ss_pred --cHHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhC--CCCCeeecHHHHH
Confidence 1123444555444444444 56677777778877775431 122333444444555554322 2344444556666
Q ss_pred HHHHcc
Q 002465 256 IELAGT 261 (919)
Q Consensus 256 ~~l~~~ 261 (919)
..+.+.
T Consensus 154 ~~Ll~~ 159 (193)
T PF12612_consen 154 DFLLSS 159 (193)
T ss_pred HHHHhC
Confidence 655543
No 388
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=36.58 E-value=5.4e+02 Score=27.23 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHccCc-HHHHHhHHHH---HHHHHHhhcCC--CcC---------hhHHHHHHH
Q 002465 232 MMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDV---VGSMLQIAEAE--SLE---------EGTRHLAIE 296 (919)
Q Consensus 232 il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~l---i~~ll~~~~~~--~~~---------~~vr~~al~ 296 (919)
-++.+...+++..+.....++..|.+++...+ ......+..+ .+.+-.++... ... .++|...+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 36667777777788888899999999998443 3333322211 11112222110 011 289999999
Q ss_pred HHHHHHhh
Q 002465 297 FVITLAEA 304 (919)
Q Consensus 297 ~l~~l~~~ 304 (919)
+|.++...
T Consensus 137 F~Lsfl~~ 144 (330)
T PF11707_consen 137 FWLSFLSS 144 (330)
T ss_pred HHHHHHcc
Confidence 99999994
No 389
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=35.58 E-value=8.9e+02 Score=29.43 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=49.3
Q ss_pred CCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH----hhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHH
Q 002465 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA----GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (919)
Q Consensus 429 d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~----~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (919)
+.+..||-.....+..+..... ..|-.+++..+. ..+.-+.+..||..+..+|.++...|..... .-+-.+
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr----~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~-~~lldi 515 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR----QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHF-NSLLDI 515 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh----hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcc-hhHHHH
Confidence 5566677666677766654433 234445555432 1111114668999999999999999985322 234445
Q ss_pred HHHHHHHhhcCChhH
Q 002465 505 VSKLLVLLQNGKQMV 519 (919)
Q Consensus 505 ~~~L~~~l~~~~~~v 519 (919)
++.+.+.-.++.+.+
T Consensus 516 ~EA~~~rs~s~~~~l 530 (1697)
T KOG3687|consen 516 IEAVMARSLSPPPEL 530 (1697)
T ss_pred HHHHHhcccCCCcch
Confidence 555555433333333
No 390
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=35.41 E-value=1.4e+02 Score=25.11 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhh-ccCCCChHHHHHHHHHHHHHHhcCC
Q 002465 435 RWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCT 493 (919)
Q Consensus 435 r~~a~~~L~~l~~~~~~~~~~~~-~~~ll~~l~~~-l~d~~~~~v~~~a~~al~~l~~~~~ 493 (919)
|......|+.++...+ ..+... --.-+|.+++. .-|..+|-+|+.|..|+.++++...
T Consensus 3 K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 4556667777764432 221111 11336666664 2343789999999999999998765
No 391
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=34.82 E-value=6.3e+02 Score=27.50 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCChHH--HHHHHHHHHHhhhc-CchHH----HHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcc
Q 002465 21 SAPFETLISHLMSTSNEQ--RSEAELLFNLCKQQ-DPDSL----TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (919)
Q Consensus 21 ~~~l~~~l~~~~s~d~~~--r~~Ae~~L~~~~~~-~p~~~----~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w 93 (919)
-..+.-+|.-+++|+.+. |-+|-..|++.... |-+.. +..++.+......++..+..+-+|.++++..
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS----- 253 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS----- 253 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh-----
Confidence 346677788889997664 88898888875432 32222 1222222233566777777777888887653
Q ss_pred cCCCHHHHHHH-----HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc----chhHHHHHHhhcCCChhHHHHHH
Q 002465 94 PRLSLHTQSSL-----KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSDSVKLQESAF 164 (919)
Q Consensus 94 ~~l~~~~~~~i-----k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w----~~ll~~l~~~~~s~~~~~r~~al 164 (919)
++.-..+ ...++-.... .++.+-+..+-+++.++-+-....+- ...-..++-+..+.|.-.|..|+
T Consensus 254 ----eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 254 ----EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred ----HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 2221111 1122233333 35666667777787777543211000 11112233344455666777777
Q ss_pred HHHHHhhh
Q 002465 165 LIFAQLSQ 172 (919)
Q Consensus 165 ~~l~~l~~ 172 (919)
.++..++.
T Consensus 329 lAV~vlat 336 (832)
T KOG3678|consen 329 LAVAVLAT 336 (832)
T ss_pred HHHhhhhh
Confidence 76666653
No 392
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=32.93 E-value=1e+02 Score=21.38 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh
Q 002465 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (919)
Q Consensus 99 ~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~ 133 (919)
...+++|+.+++.|... ++..|.++..+|+.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~-~~~~~~~llpvi~tlL~ 36 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESR-EPSEREQLLPVIATLLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHTTS-S---HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHC
Confidence 35678999999999874 57888888888887765
No 393
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=32.37 E-value=4.1e+02 Score=24.54 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=59.6
Q ss_pred HHHHHHHHhhccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchhHHHHHHhhc
Q 002465 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVS 153 (919)
Q Consensus 76 ~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~--~~~w~~ll~~l~~~~~ 153 (919)
++..+|.+.++.+ +..+..|.+.+++.+....+. ......++++.+.+...- .+.|..+. .+++.+.
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~-~~~~~idlL~~lv~~~p~~vle~~~~l~-~~ld~l~ 105 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSS-PSSQYIDLLSELVRKAPLTVLECSSKLK-ELLDYLS 105 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHH-GGGGGTT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHChHHHHHHHHHHH-HHHHHHH
Confidence 8888999988775 445566666666666653332 223456777777764210 12333222 2223332
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002465 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (919)
Q Consensus 154 s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (919)
.-.......-+.++.=+++.. .. ..+.++-.+-+.|-+. +.+.|..|+..+
T Consensus 106 ~lp~~~a~~ll~Al~PLi~~s-~~---lrd~lilvLRKamf~r-~~~~R~~Av~Gf 156 (158)
T PF14676_consen 106 FLPGDVAIGLLRALLPLIKFS-PS---LRDSLILVLRKAMFSR-ELDARQMAVNGF 156 (158)
T ss_dssp TS-HHHHHHHHHHHHHHHTT--HH---HHHHHHHHHHHHTT-S-SHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcC-HH---HHHHHHHHHHHHHccc-cHHHHHHHHHHh
Confidence 222333222333333333221 11 3456777778888776 788888887654
No 394
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.10 E-value=5.9e+02 Score=26.37 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCHh-HHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 418 QVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 418 ~l~~~l~~~l~d~~~~-vr~~a~~~L~~l~~~~~~~~~~~~~-~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
.++..+.+.++..++. .-..||.-++++.+..+... .-.. -..=..+++.+++ ++++||-.|..++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~-~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN-AVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH-HHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 4566666666555444 34456777888887765432 1111 1333456777887 899999999999887654
No 395
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=31.23 E-value=67 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=20.0
Q ss_pred hhhHHHHHHHcCCChHHHHHHHHHhc
Q 002465 7 HLQQSQLAVILGPDSAPFETLISHLM 32 (919)
Q Consensus 7 ~~~~~~~~~~~~~d~~~l~~~l~~~~ 32 (919)
|+.+.++|..+|..++.+..+|..+.
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 68899999999999999988887664
No 396
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=31.20 E-value=6.2e+02 Score=26.27 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred ccCchhhHHHHHHHcCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHH----------HHHHHHHHccCCC-H
Q 002465 3 AESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL----------TLKLAHLLQRSPH-P 71 (919)
Q Consensus 3 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~----------~~~l~~il~~~~~-~ 71 (919)
++|.+-.-.|++. .--+-+.+..++..+..-+=+.|+-+.+-.+.+...+-+.. ...+..++.+-.+ +
T Consensus 61 ~eP~~e~~~qLtq-ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~ 139 (342)
T KOG1566|consen 61 AEPFAEAVAQLTQ-EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTP 139 (342)
T ss_pred CCCChHHHHHHHH-HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccch
Q ss_pred HHHHHHHHHHHHhhccC-------CCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchh
Q 002465 72 EARAMAAVLLRKLLTRD-------DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL 144 (919)
Q Consensus 72 ~~R~~a~i~L~~~i~~~-------~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~l 144 (919)
++--.++.+|+-.++.. ....+..+..=.+..-....-.++.. -...+++....+..-+.+.. .|- +
T Consensus 140 ~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~t-fK~llt~Hk~~vaEfl~~n~----d~f-f 213 (342)
T KOG1566|consen 140 EIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFST-FKELLTRHKSVVAEFLIRNY----DNF-F 213 (342)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHH-HHHHHHHhHHHHHHHHHhCh----hhh-H
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhh--ccccHH--HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcc
Q 002465 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LTPHLK--HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (919)
Q Consensus 145 l~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~--~~~~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (919)
...-..++.+.+.-.|.-++.++|.+.-.-+.. +..|+. .-+.+++..|+++ +..++..|++.+..++....++.
T Consensus 214 ~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q 292 (342)
T KOG1566|consen 214 AEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQ 292 (342)
T ss_pred HHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCc
Q ss_pred -hhhHHhhhHHHHHHHHHHHHhcCChHHH
Q 002465 221 -DRDRFQDLLPLMMRTLTESLNNGNEATA 248 (919)
Q Consensus 221 -~~~~~~~~~p~il~~l~~~l~~~~~~~~ 248 (919)
...-+...-|.++..+...-.+..++.+
T Consensus 293 ~V~~IL~~Nr~KLl~~l~~f~~d~~~Deq 321 (342)
T KOG1566|consen 293 PVRDILVRNRPKLLELLHDFHTDRTEDEQ 321 (342)
T ss_pred hHHHHHHhCcHHHHHHHHHhCCCCCchhh
No 397
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=30.41 E-value=1.2e+03 Score=29.45 Aligned_cols=148 Identities=11% Similarity=-0.005 Sum_probs=70.4
Q ss_pred HHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 002465 710 IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIE---KGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICA 786 (919)
Q Consensus 710 ~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 786 (919)
..+++...+-.+.+. +.+||..|+..|..|-........ .+..........+.++....-.+-+.|... .++...
T Consensus 541 ~~~LL~L~Lfklg~~-~~eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~-hPELs~ 618 (1120)
T PF14228_consen 541 FWELLNLVLFKLGDE-SSEIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAKQ-HPELSF 618 (1120)
T ss_pred HHHhHHHHHHhhcCC-cHHHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHHh-ChhhHH
Confidence 335666654444544 689999999988877544321100 111100000111222322222333444333 344444
Q ss_pred HHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhhhhhhhhhhhHHHHHHHHHHHHH
Q 002465 787 SMLDSL-NECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILG 865 (919)
Q Consensus 787 ~~~~~l-~~~i~~~g~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~e~e~~l~~~~~~~l~ 865 (919)
.++.-+ .+.....+ +..-..++..+..++++..- + ..+ +. .. -+.+..-|.
T Consensus 619 ~ifSEi~~R~~~~~~----~~~rr~mL~~LlPWvqnleL-~--------~~~--~~--------g~-----s~~vL~nL~ 670 (1120)
T PF14228_consen 619 PIFSEISQRFFNAVP----PDARRDMLAYLLPWVQNLEL-V--------SLP--ES--------GW-----SEMVLNNLF 670 (1120)
T ss_pred HHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhhcee-c--------ccC--CC--------Cc-----HHHHHHHHH
Confidence 444332 22332222 23345688888888876321 0 100 00 00 112444455
Q ss_pred HHHHHccccchhhHHHHHHhHh
Q 002465 866 TLIKTFKAAFLPFFDELSSYLT 887 (919)
Q Consensus 866 ~l~~~~~~~~~~~~~~l~~~~~ 887 (919)
.+-..+|+.+..-+..++..+.
T Consensus 671 ~iT~k~~d~~~~Eve~lW~~L~ 692 (1120)
T PF14228_consen 671 YITIKFGDDHPNEVEALWIALA 692 (1120)
T ss_pred HHHHHhccccHHHHHHHHHHHh
Confidence 6777778887777777776654
No 398
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=29.56 E-value=7.2e+02 Score=26.56 Aligned_cols=210 Identities=16% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHHHH--HHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhch-hHHhhhhhhhHH
Q 002465 387 AAPEWQKHHAALIALAQ--IAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQVLP 463 (919)
Q Consensus 387 ~~~~~~~r~aal~~l~~--i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~ll~ 463 (919)
.+.+.+.|.+++..+.. .++..++.+.+....+...+..+++.+...-+..+...+|.++.-.++ ...........|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 35677889999876654 445667777777778888888889888777666666566666554442 121445566666
Q ss_pred HHHhhccCCCC--hHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHH-----HhhcCC---------hhHHHHHHHHH
Q 002465 464 ALAGAMDDFQN--PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV-----LLQNGK---------QMVQEGALTAL 527 (919)
Q Consensus 464 ~l~~~l~d~~~--~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~-----~l~~~~---------~~v~~~~l~al 527 (919)
.+...+.+ .+ ...|..++.++..-+-....... .. ...+..+.. .+...+ ....-.++.+-
T Consensus 150 ~~~li~~d-~s~sv~~r~~ca~sl~v~~l~a~~d~~-e~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 226 (427)
T KOG2842|consen 150 FLALILDD-ESASIKARSICATSLGTACLIAEADII-EL-GSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAW 226 (427)
T ss_pred HHHHHhhc-cccchHHHHHHHHHHHHHHHHHhhhHH-HH-HHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHH
Confidence 66666665 43 34455666555544332221211 11 111111111 111111 11122222222
Q ss_pred HHHHHhhHHHHHHhH-hhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhc
Q 002465 528 ASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (919)
Q Consensus 528 ~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~ 600 (919)
+-+...+......++ ....|.+..++.. ..-+.+..++.+++.+..+++....+.+-|..+++...+..+-+
T Consensus 227 a~~Lti~~~~~~~~~~~~~~p~i~~lLs~-~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~lat 299 (427)
T KOG2842|consen 227 SLLLTICPEALSEQLDAALAPKLPLLLSS-ERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLAT 299 (427)
T ss_pred HHHHHcCccchhhHHHHHhccchHHHhcc-chhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHH
Confidence 222222222111222 2244555555532 22233444555666677777666555555777777777766543
No 399
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=29.38 E-value=4.3e+02 Score=23.84 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=53.7
Q ss_pred CcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcC-
Q 002465 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS- 218 (919)
Q Consensus 140 ~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~- 218 (919)
.++++-..+.+++.++++.++..|+.|+...-. +.+.+|-+.+. +.+.+ ...|.+-... ...-+.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~----~Lldd---~~frdeL~~f----~~~~~~~ 79 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLE----NLLDD---KTFRDELTTF----NLSDESS 79 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHH----HHcCc---chHHHHHHhh----cccCCcC
Confidence 567888888999999999999999999876432 34555554443 33433 2444433221 111110
Q ss_pred cchhhHHhhhHHHHHHHHHHHHhc
Q 002465 219 SADRDRFQDLLPLMMRTLTESLNN 242 (919)
Q Consensus 219 ~~~~~~~~~~~p~il~~l~~~l~~ 242 (919)
....+.-..++|.++.++...+..
T Consensus 80 ~I~~ehR~~l~pvvlRILygk~~~ 103 (141)
T PF07539_consen 80 VIEEEHRPELMPVVLRILYGKMQS 103 (141)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHhh
Confidence 112334457788888888876653
No 400
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.78 E-value=9.5e+02 Score=27.68 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~ 492 (919)
.|.+.++..++..+.+ +...++..+|.++..++++-
T Consensus 320 N~~~kiv~l~vr~in~-~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 320 NLRQKIVKLVVRLIND-PGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred cHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhcCC
Confidence 6788999999999998 67788999999999988653
No 401
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=26.98 E-value=2.8e+02 Score=31.97 Aligned_cols=88 Identities=8% Similarity=0.065 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHH
Q 002465 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR 435 (919)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr 435 (919)
..|.++++.+....|...+-..+-|.+.+...+..+-.-.-+-...|...+...+.+..|+..++..|.... ..-|.|-
T Consensus 360 SLasK~mde~mkl~Gm~YLh~tLkPvi~kI~eekK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~-~~CP~vm 438 (800)
T KOG2059|consen 360 SLASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEKKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSS-TRCPTVM 438 (800)
T ss_pred chHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhcCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhcc-ccChHHH
Confidence 467788888888888666666677777766654322111112222333355555566678888888777643 3345555
Q ss_pred HHHHHHHHH
Q 002465 436 WAAINAIGQ 444 (919)
Q Consensus 436 ~~a~~~L~~ 444 (919)
..++.-|-+
T Consensus 439 ~~~F~~Lr~ 447 (800)
T KOG2059|consen 439 CQIFYDLRE 447 (800)
T ss_pred HHHHHHHHH
Confidence 444444433
No 402
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=26.86 E-value=1.7e+02 Score=27.27 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccCCCCc-----chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 002465 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (919)
Q Consensus 124 ~~~~i~~i~~~~~~~~~w-----~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 178 (919)
+++++..+....-+ +.| ..++|.+..+++|+...+...|+..+..+.+.+++.+
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766632223 456 4899999999999999999999999999998876553
No 403
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=26.65 E-value=7.8e+02 Score=26.02 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh---hhhh---hhHHHHHhhcc-CCCC--------hHHHHHHHHH
Q 002465 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN---QFHP---QVLPALAGAMD-DFQN--------PRVQAHAASA 484 (919)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~---~~~~---~ll~~l~~~l~-d~~~--------~~v~~~a~~a 484 (919)
+..+...|+...+.+...++..|..++..-+..... ..++ ..++.++..=. .... +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 667777888888888889999999998844432211 1222 33444432111 1011 2899999999
Q ss_pred HHHHHhcCCCccccCcH--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhH-----HHHHHhHhhhhHHHHHHHhhcC
Q 002465 485 VLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-----EHFQKYYDAVMPFLKAILVNAT 557 (919)
Q Consensus 485 l~~l~~~~~~~~l~~~l--~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~-----~~~~~~~~~i~~~l~~~l~~~~ 557 (919)
+-.++...++......+ ..++..+++.+......+-..++.++-.-+-.-+ ....-+=+.++..|..+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 99998877643222222 2236777777777777777777777764332211 1111233455566666554332
Q ss_pred CcccchhhhHHHHHHHHHHhh
Q 002465 558 DKSNRMLRAKSMECISLVGMA 578 (919)
Q Consensus 558 ~~~~~~lr~~ai~~l~~l~~~ 578 (919)
..+...++..+-+.+-.+++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 223345666677777776643
No 404
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=26.36 E-value=4.7e+02 Score=23.33 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=56.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHH--HHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhh--hh
Q 002465 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF--HP 459 (919)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~--~~ 459 (919)
++-+-.+-..++-...-|+.++-.... -.++. +++...+.++..++.....-++-.|.++|-.-.. ..+ ..
T Consensus 24 efq~tt~~eakeqv~ANLANFAYDP~N--ys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n---~~~I~ea 98 (173)
T KOG4646|consen 24 EFQTTTNIEAKEQVTANLANFAYDPIN--YSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN---AKFIREA 98 (173)
T ss_pred HHHHhccHHHHHHHHHHHHhhccCcch--HHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH---HHHHHHh
Confidence 333334444444443344444333221 13343 4677888889999988887776666666543222 122 22
Q ss_pred hhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 460 ~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
.=+|.++..+.+ +...+...++.++..+..
T Consensus 99 ~g~plii~~lss-p~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 99 LGLPLIIFVLSS-PPEITVHSAALFLQLLEF 128 (173)
T ss_pred cCCceEEeecCC-ChHHHHHHHHHHHHHhcC
Confidence 345667778888 666666666666665554
No 405
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.87 E-value=4.2e+02 Score=22.59 Aligned_cols=70 Identities=7% Similarity=0.186 Sum_probs=45.5
Q ss_pred chhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhccccH-HHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 002465 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (919)
Q Consensus 142 ~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (919)
+.++..+.+.+....+..+..+++++..+++.......... ..+.+++....... ++++|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~-~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV-DEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 45556666666666678888999999999988654432222 23356666666665 778887666655443
No 406
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.33 E-value=2.2e+03 Score=30.90 Aligned_cols=171 Identities=11% Similarity=0.170 Sum_probs=104.0
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcC----C---CccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 002465 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC----T---PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (919)
Q Consensus 459 ~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~----~---~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~ 531 (919)
..+++++...+.. .+..++.....++..+.+.. + .....|.++.+++.++++..++....|...+..|+.+.
T Consensus 983 ~i~ldal~~~l~~-~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 983 STFLDALVESLSH-ENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 4577888888887 78888888888887765432 2 22345889999999999999988888888888888888
Q ss_pred HhhHHHH-HHhHhhhhHHHHHHHhhcCCcccchhhhHHHHHHHHHHh----hhChhhhh-hhHHHHHHH-HHHHhcCCCC
Q 002465 532 DSSQEHF-QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM----AVGKDKFR-DDAKQVMEV-LMSLQGSQME 604 (919)
Q Consensus 532 ~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~~~lr~~ai~~l~~l~~----~~~~~~~~-~~~~~i~~~-l~~l~~~~~~ 604 (919)
...+..+ ..+...++..+...+.....+....--..+..++-.+.+ .++.+.-. ..+..++.. ...+.+
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n---- 1137 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN---- 1137 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC----
Confidence 7777433 356667777777776543222111000012222222221 12111111 112223322 233444
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccchhh
Q 002465 605 TDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (919)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~ 634 (919)
..+.+|+.+..++..+....|......+..
T Consensus 1138 pN~~VR~~~~~~L~~i~~~s~~~v~~L~~p 1167 (3550)
T KOG0889|consen 1138 PNSDVREFSQKLLRLISELSGKSVVKLLEP 1167 (3550)
T ss_pred CchHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 334689999999999999988775444433
No 407
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=25.33 E-value=3.9e+02 Score=23.00 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHccCcH---HHHHhHHHHHHHHHHhhcCC--CcChhHHHHHHHHHHH
Q 002465 244 NEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAE--SLEEGTRHLAIEFVIT 300 (919)
Q Consensus 244 ~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~li~~ll~~~~~~--~~~~~vr~~al~~l~~ 300 (919)
+++....++.....++...+. .+..+..+++..++.+-.+- +.-++.|..|+-.+..
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v 79 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVV 79 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHH
Confidence 567778889999999988776 67778888888777764321 1224567666544433
No 408
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.09 E-value=5.5e+02 Score=23.69 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhhHHhhhHHHHHHHHHHHHhc
Q 002465 163 AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (919)
Q Consensus 163 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~p~il~~l~~~l~~ 242 (919)
-..+|+.++...+-.+..+...+...+-.. ..- ..++-..-++++.-++.. .. .+-..++-.+.+.+-+
T Consensus 75 ~idlL~~lv~~~p~~vle~~~~l~~~ld~l-~~l-p~~~a~~ll~Al~PLi~~------s~---~lrd~lilvLRKamf~ 143 (158)
T PF14676_consen 75 YIDLLSELVRKAPLTVLECSSKLKELLDYL-SFL-PGDVAIGLLRALLPLIKF------SP---SLRDSLILVLRKAMFS 143 (158)
T ss_dssp HHHHHHHHHHH-HHHHS-S-HHHHGGGGGT-TTS--HHHHHHHHHHHHHHHTT-------H---HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHH-HhC-CHHHHHHHHHHHHHHHhc------CH---HHHHHHHHHHHHHHcc
Confidence 367888888887776666666666555333 322 444544444444444432 12 2333777788888877
Q ss_pred CChHHHHHHHHHHH
Q 002465 243 GNEATAQEALELLI 256 (919)
Q Consensus 243 ~~~~~~~~a~~~l~ 256 (919)
.+.+.|..|...+.
T Consensus 144 r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 144 RELDARQMAVNGFL 157 (158)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 88888888877654
No 409
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=25.09 E-value=1.5e+03 Score=28.73 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002465 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (919)
Q Consensus 419 l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~ 490 (919)
+++..+...-..++.|-...+.++..+....... .-....++...+-.+.+ ++..||..|...|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~--~~~~~~LL~L~Lfklg~-~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYP--PCPFWELLNLVLFKLGD-ESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCC--CCCHHHhHHHHHHhhcC-CcHHHHHHHHHHHHHHHH
Confidence 5554444444456778777777777665432211 11244788877778888 899999999998887653
No 410
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=24.71 E-value=1e+03 Score=26.80 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchH---H-----HHHHHHHHccCCCHHHHHHHHHHHHHhhcc--CCCCc
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---L-----TLKLAHLLQRSPHPEARAMAAVLLRKLLTR--DDSFL 92 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~---~-----~~~l~~il~~~~~~~~R~~a~i~L~~~i~~--~~~~~ 92 (919)
....+.+.+.++++..+..|-+.|.++.. +|.. | +..|..++.++..-..+.+-+..|+....- ++.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34566777888888888888888877665 4531 1 344555555433212222233333332221 12234
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc---chhHHHHHHhhcCCChhHHHHHHHHHHH
Q 002465 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (919)
Q Consensus 93 w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w---~~ll~~l~~~~~s~~~~~r~~al~~l~~ 169 (919)
|..++......+-... ..+.. +.++-..+...+..+....-....| ...+..+++.++..+......|+..+..
T Consensus 163 W~~~~~~fV~~~a~~V--~~~~~-~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYV--NAKRE-DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeecccHHHHHHHHHH--hhhhh-cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8877776655554333 22222 2222222223333332221111233 1235555555655555444446666666
Q ss_pred hhhhhhhh
Q 002465 170 LSQYIGDT 177 (919)
Q Consensus 170 l~~~~~~~ 177 (919)
+....++.
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 65554443
No 411
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=24.63 E-value=1.1e+03 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhhhcccchhhhcchhhHHHHHHHHHHhh
Q 002465 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (919)
Q Consensus 271 ~~li~~ll~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l 330 (919)
..++..++..+.+++....+|..|...+.+++.. +. . -...++..++..+..|+
T Consensus 345 ~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaR---Ak-~--v~~~~v~~~l~~L~~w~ 398 (563)
T PF05327_consen 345 DAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLAR---AK-F--VPLSTVRSVLSYLCDWL 398 (563)
T ss_dssp HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHH---BT-T----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH---Hh-c--CCHHHHHHHHHHHHHHH
Confidence 4566677777767777888999999999988772 21 0 11245666666666655
No 412
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=23.78 E-value=1.1e+02 Score=24.88 Aligned_cols=13 Identities=0% Similarity=-0.028 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHcc
Q 002465 860 VGEILGTLIKTFK 872 (919)
Q Consensus 860 ~~~~l~~l~~~~~ 872 (919)
++..+....+..+
T Consensus 49 a~~~~~~v~rYlt 61 (101)
T PF09026_consen 49 AMAYFTMVKRYLT 61 (101)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHhhcchHhhhhh
Confidence 3333444444433
No 413
>PF14961 BROMI: Broad-minded protein
Probab=23.64 E-value=2.3e+02 Score=35.04 Aligned_cols=73 Identities=7% Similarity=0.149 Sum_probs=56.6
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhccc-CCCCcchhHHHHHHhhcCCChhHHHHHHHHHHHhhhhhhhhc
Q 002465 106 SMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (919)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~-~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~ 178 (919)
+.+++.|...+...+|..+.+.+..+--.+. ....|+.+-..|...+.++|+.....++..........+-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 5667777776788999998887765433332 235999999999999999999999999998888776655443
No 414
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.59 E-value=1.6e+02 Score=25.77 Aligned_cols=70 Identities=9% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccCCCCcchhHHHHHHhh---cCCChhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhC
Q 002465 125 CDTVSELASNILPENGWPELLPFMFQCV---SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT 194 (919)
Q Consensus 125 ~~~i~~i~~~~~~~~~w~~ll~~l~~~~---~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 194 (919)
...+..|+...+.......++..+...+ ...++.+...|+.++..++...++.+...+..-...+..+..
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~ 93 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQD 93 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcce
No 415
>PRK04964 hypothetical protein; Provisional
Probab=22.93 E-value=2e+02 Score=21.21 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcccccccHHHHHHHHccccCC-----cCChHHHHHHHHhHHHHHH
Q 002465 692 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 742 (919)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~-----~~~~~vr~~a~~~l~~l~~ 742 (919)
|+.+..+....|..=.-|+++.+...++.+++ ....+||..|+.+-..|+.
T Consensus 5 CelvR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLli 60 (66)
T PRK04964 5 CELVRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLV 60 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 44555555556665567888877776666654 3467899998887776654
No 416
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=1.1e+03 Score=26.20 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccc-----ccccHHHHHHHHccccCCcCChHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHH----
Q 002465 692 CNMLCCYADELKEG-----FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVK---- 762 (919)
Q Consensus 692 ~~~l~~l~~~~~~~-----~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---- 762 (919)
..+|.+++...|+. |+||+..+++.+.+.++-.. +.--.+++..+...+.+...+ +-+.
T Consensus 417 ~ecLm~IaalYgenFillQ~fP~~sdLI~lc~KRisg~L-EgaiiSs~qil~~mipclsDa-----------~iMehlqh 484 (1034)
T KOG4190|consen 417 EECLMEIAALYGENFILLQFFPFCSDLIELCHKRISGQL-EGAIISSFQILELMIPCLSDA-----------QIMEHLQH 484 (1034)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhhccccc-chhhhhHHHHHHHhccccchH-----------HHHHHHHH
Confidence 45788888888876 57888888888888776543 232333344444333333211 1111
Q ss_pred HHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHHHHHH
Q 002465 763 QLSDFIIPALVEALHKEP---------DTEICASMLDSLNECIQISGPLLDEGQVR-SIVDEIKQVITA 821 (919)
Q Consensus 763 ~~~~~~~~~l~~~l~~e~---------~~~~~~~~~~~l~~~i~~~g~~~~~~~~~-~i~~~l~~~l~~ 821 (919)
-+++.++-++++.+.... +.-+....++++..+-+..|..|+.++.- .+++.+.-++..
T Consensus 485 imldaillpilrllsstnlvmpsgylg~~~ia~Kf~dai~ais~kiGsdmTReh~cQPllnpFfLiFnk 553 (1034)
T KOG4190|consen 485 IMLDAILLPILRLLSSTNLVMPSGYLGEEFIAQKFCDAIHAISQKIGSDMTREHACQPLLNPFFLIFNK 553 (1034)
T ss_pred HhhhhhhhhHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHhcchhhHHHhcCccccchhhhhhh
Confidence 234445555666664321 22334556778888888888766655432 233444444443
No 417
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=22.02 E-value=2.1e+02 Score=21.06 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcccccccHHHHHHHHccccCC-----cCChHHHHHHHHhHHHHHH
Q 002465 692 CNMLCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 742 (919)
Q Consensus 692 ~~~l~~l~~~~~~~~~p~~~~~~~~l~~~l~~-----~~~~~vr~~a~~~l~~l~~ 742 (919)
|..+..+....|..=.-|+++.+...++.+++ ...++||..|+.+-..|+.
T Consensus 5 CeliR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLli 60 (66)
T PF06786_consen 5 CELIRELYAQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLI 60 (66)
T ss_pred HHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHH
Confidence 34455555556655567888777776666553 3467899998887776654
No 418
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=1.2e+03 Score=26.35 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhhhchhHHh
Q 002465 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (919)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 455 (919)
|..+..+.+++++++.+.+.+++..+|..-.|... ++++..+.+...+.+.-+.-+++.++.--...++..- .
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~------eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcn-g 521 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA------EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCN-G 521 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH------HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccC-c
Q ss_pred hhhhhhHHHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcC--------------------
Q 002465 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-------------------- 515 (919)
Q Consensus 456 ~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~-------------------- 515 (919)
.....++..++..=....+..--.--+..|..+.-.-+ +........|+..=..+-+..
T Consensus 522 D~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~-d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~ 600 (881)
T COG5110 522 DLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRK-DQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQS 600 (881)
T ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcccc-chhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHH
Q ss_pred --------------ChhHHHHHHHHHHHHHHhhHHHH----------------HHhHhhhhHHHHHHHhh----------
Q 002465 516 --------------KQMVQEGALTALASVADSSQEHF----------------QKYYDAVMPFLKAILVN---------- 555 (919)
Q Consensus 516 --------------~~~v~~~~l~al~~l~~~~~~~~----------------~~~~~~i~~~l~~~l~~---------- 555 (919)
+...--..+.++|.-.-..|++. .+++..++|....++..
T Consensus 601 lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDt 680 (881)
T COG5110 601 LLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDT 680 (881)
T ss_pred HHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHH
Q ss_pred ---cCCcccchhhhHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 002465 556 ---ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (919)
Q Consensus 556 ---~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (919)
...+....+.-.++-++|.++.......+.+.+.++.....+
T Consensus 681 L~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaqlLrQlaSYY~k 725 (881)
T COG5110 681 LERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASYYYK 725 (881)
T ss_pred HHHhccccchhHHHHHHHHhhccccCcchHHHHHHHHHHHHHHhh
No 419
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.60 E-value=6.6e+02 Score=25.47 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCHhHHHHHHHHHHHhhhh-hchhHHhhhhh-hhHHHHHhhccCCC---ChHHHHHHHHHHHHHHhc
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD-LGPDLQNQFHP-QVLPALAGAMDDFQ---NPRVQAHAASAVLNFSEN 491 (919)
Q Consensus 417 ~~l~~~l~~~l~d~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~-~ll~~l~~~l~d~~---~~~v~~~a~~al~~l~~~ 491 (919)
..+...+.....+..+..+-.+++++.++..+ .+......... .++..+...... . +..+|.+++..+-++.-.
T Consensus 109 ~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 109 DLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSS-LLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTT-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhc-cccccHHHHHHHHHHHHHHHHH
Q ss_pred CCCcc-ccCcHHHHHHHHHH-Hhhc-CChhHHHHHHHHHHHHH
Q 002465 492 CTPEI-LTPYLDGIVSKLLV-LLQN-GKQMVQEGALTALASVA 531 (919)
Q Consensus 492 ~~~~~-l~~~l~~i~~~L~~-~l~~-~~~~v~~~~l~al~~l~ 531 (919)
..... -......++..+.+ .... .++++.-+++.|+|+++
T Consensus 188 ~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 188 LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
No 420
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.28 E-value=1.2e+03 Score=26.28 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhccccHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhcCcchhh--------HHhhh
Q 002465 157 VKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD--------RFQDL 228 (919)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--------~~~~~ 228 (919)
|.....-..++..+|+..|+.+..+-.++...+.+++.-+-..+...+.++.....+-.+..+.... .+..+
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~ef 650 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREF 650 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccCcHHHHHhHHHHHHHHHHhhcCCCcChhHHHHHHHHHHHH
Q 002465 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (919)
Q Consensus 229 ~p~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~li~~ll~~~~~~~~~~~vr~~al~~l~~l 301 (919)
+|.++..+. .++-+.+....++.+|-.++-..+.++..++..++. +..++..|..--..+..+
T Consensus 651 L~tvf~~ll--~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~s--------kq~np~~~qrLa~Af~~L 713 (748)
T KOG4541|consen 651 LRTVFHFLL--FEDYSTDLVSTAADALYPLILCEPNLYQELVNELIS--------KQANPNFKQRLANAFQVL 713 (748)
T ss_pred HHHHHHHHH--HhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh--------hccChHHHHHHHHHHHHH
No 421
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.18 E-value=2e+03 Score=28.71 Aligned_cols=120 Identities=10% Similarity=0.119 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcHHHHHHhHHHHHHHHHhhCCCCCHhHHHHHHH
Q 002465 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAIN 440 (919)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~ 440 (919)
++..-...+ +.+++.++.+...++.+++..++..|...+..+-..+... +-++++..++..+.+.+..-..+|+.
T Consensus 421 ~f~~~~~vL--~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~---~qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 421 TFKGHSEVL--KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY---CQQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHHHH--TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH---HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHhhhHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 343333444 4788899999999999999999999999888888777542 22456666655553334433468899
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002465 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (919)
Q Consensus 441 ~L~~l~~~~~~~~~~~~~~~ll~~l~~~l~d~~~~~v~~~a~~al~~l 488 (919)
.|..++...+..+ .+| ...+..++..+.+-....+|. ....|..+
T Consensus 496 vL~~L~~~~~~~l-~~f-a~~l~giLD~l~~Ls~~qiR~-lf~il~~L 540 (1426)
T PF14631_consen 496 VLCELAEKNPSEL-QPF-ATFLKGILDYLDNLSLQQIRK-LFDILCTL 540 (1426)
T ss_dssp HHHHHHHH-HHHH-HHT-HHHHHGGGGGGGG--HHHHHH-HHHHHHHH
T ss_pred HHHHHHhccHHHH-HHH-HHHHHHHHHHHhcCCHHHHHH-HHHHHHHH
Confidence 9999887655544 333 445555556655522234432 34444443
No 422
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.13 E-value=7.2e+02 Score=23.60 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=53.6
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHHhH
Q 002465 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542 (919)
Q Consensus 463 ~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~ 542 (919)
+.+..-..+ ++.-+|..++.++..+... ..+.+.+++.+...+.+.+..+|..+-.+|..+....++...+|+
T Consensus 108 ~~~~~w~~s-~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKS-ENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 566667777 7888888888777776655 256778888888888888889998888888888776554444443
No 423
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=20.84 E-value=3.5e+02 Score=20.08 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHcCCChHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHH
Q 002465 12 QLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60 (919)
Q Consensus 12 ~~~~~~~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~ 60 (919)
++-.+...+|+-+..+|+.+...+++..+. +.+ ||+.|+..
T Consensus 12 ~lR~~vq~NP~lL~~lLqql~~~nP~l~q~-------I~~-n~e~Fl~l 52 (59)
T PF09280_consen 12 QLRQLVQQNPQLLPPLLQQLGQSNPQLLQL-------IQQ-NPEEFLRL 52 (59)
T ss_dssp HHHHHHHC-GGGHHHHHHHHHCCSHHHHHH-------HHH-THHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHhccCHHHHHH-------HHH-CHHHHHHH
Confidence 333444488888888898888888776543 223 67666443
No 424
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=1.7e+03 Score=27.67 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhhcCchH---------H---HHHHHHHHccCCCHHHHHHHHHHHHHhhccCCCCcccCCCHHHHHHH
Q 002465 37 EQRSEAELLFNLCKQQDPDS---------L---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSL 104 (919)
Q Consensus 37 ~~r~~Ae~~L~~~~~~~p~~---------~---~~~l~~il~~~~~~~~R~~a~i~L~~~i~~~~~~~w~~l~~~~~~~i 104 (919)
+....+-..|..+.+.+|+- + ...++..+....++.+.++|...+...-... .+-..+.. ...
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~---~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLAT---CNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHh---hhH
Confidence 34455556666665557721 1 1344445555778889999987776554432 11111211 124
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcc-----hhHHHHHHhhcCCChhHHHHHHHHHHHhhhh--hhhh
Q 002465 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP-----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQY--IGDT 177 (919)
Q Consensus 105 k~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~-----~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~--~~~~ 177 (919)
...|++.|-+ -++.|..+-+++-.+++. ++-.|. .++..+.-.+.+..+..|..+..+|+.+.-. .++.
T Consensus 1815 L~~LL~lLHS--~PS~R~~vL~vLYAL~S~--~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr 1890 (2235)
T KOG1789|consen 1815 LTTLLTLLHS--QPSMRARVLDVLYALSSN--GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR 1890 (2235)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHhcC--cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc
Confidence 4566666654 567788777887777652 212332 2233333344566778888888888877543 2333
Q ss_pred ccccHHHHHH-HHHHhhCCC
Q 002465 178 LTPHLKHLHA-VFLNCLTNS 196 (919)
Q Consensus 178 ~~~~~~~l~~-~l~~~l~~~ 196 (919)
..-.+-.++| .+...+.|.
T Consensus 1891 V~ITL~kFLP~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1891 VTITLIKFLPEIFADSLRDS 1910 (2235)
T ss_pred eeeehHHhchHHHHHHHhcC
Confidence 3323334443 566677763
Done!