Query 002465
Match_columns 919
No_of_seqs 365 out of 3133
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 16:07:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002465.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1187-1191//hhsearch_pdb/002465hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 543.3 76.8 790 17-915 5-828 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 517.7 79.9 794 19-909 1-855 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 485.3 69.2 797 23-914 2-874 (876)
4 1wa5_C Importin alpha RE-expor 1.0 1 1 430.5 62.4 754 19-821 2-869 (960)
5 2x1g_F Cadmus; transport prote 1.0 1 1 413.0 50.9 769 18-883 3-920 (971)
6 2x19_B Importin-13; nuclear tr 1.0 1 1 412.1 60.7 764 18-882 20-907 (963)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 387.8 56.4 551 17-598 1-618 (1230)
8 3m1i_C Exportin-1; heat repeat 1.0 1 1 383.0 64.6 721 18-800 12-881 (1049)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 376.7 60.6 742 58-918 12-791 (852)
10 1qgr_A Protein (importin beta 1.0 1 1 367.8 66.7 729 68-915 12-831 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=543.31 Aligned_cols=790 Identities=19% Similarity=0.232 Sum_probs=644.9
Q ss_pred CCCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 09990---789999999428993888999999988660193399999999970--6999779988999999750358787
Q 002465 17 LGPDS---APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSF 91 (919)
Q Consensus 17 ~~~d~---~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~--~~~~~~~r~~a~i~L~~~i~~~~~~ 91 (919)
|.+++ +++.++|+.++|||+++|++||++|+++++ +|+ +...|..++. ++.++.+|++|+++||+.+.++
T Consensus 5 w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~--- 79 (852)
T 4fdd_A 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH--- 79 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS---
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC---
T ss_conf 89984239999999998739498999999999999870-998-8999999985668898679999999999989874---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45578987899999999899841642769999999999998521699993015999998302998567989999999935
Q 002465 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (919)
Q Consensus 92 ~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~i~ 171 (919)
|..++++.+..+|+.+++.+.+ +++.+|+.++.+++.+++.+.+ +.||++++.+.+.+.++++..|+.++.+++.++
T Consensus 80 -w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 80 -FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp -GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf -4779999999999999998749-9899999999999999986481-356899999999870999899999999999999
Q ss_pred HHHHHHCC-----CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 66642112-----1199999999975379999589999999999999830681026578645899999999998269967
Q 002465 172 QYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (919)
Q Consensus 172 ~~~~~~l~-----~~~~~l~~~l~~~l~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~ip~il~~l~~~l~~~~~~ 246 (919)
+..++.+. ..+..+++.+.++++++ +..||..|++++..++... ...+...++.+++.+...++++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~~ 230 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEPE 230 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHCHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 985787563431332999999999985679-7899999999999998646-----3879988999999999871799778
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
Q ss_conf 89999999999873481888993999999999963488867468899999999999610035223202635699999999
Q 002465 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (919)
Q Consensus 247 ~~~~a~~~l~~l~~~~~~~~~~~~~~ii~~l~~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l 326 (919)
+|..++++|..+++.++..+.+|+..+++.++....+ .++.+|..|+++|..+++. +...+...+++..++|.+
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999857798998899999999987069--9689999999999998603----657988788898899999
Q ss_pred HHHHCCCCCCCCCCCCC-CCCCCC----CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98424799984434689-987554----6776120388899999987199743587997798832898877999999999
Q 002465 327 MSMLLDIEDDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (919)
Q Consensus 327 ~~~l~~~~~~~~w~~~~-~~~ed~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (919)
+..|...+++..|...+ ++++++ ..++.+..+..+++.++..+| +.+++.+++.+...+++++|++|++++.++
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9875786767998669844322245640111699999999999987461-878999999999985599889999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99997409998982999999998307898876999999999985533104478633441699999622699994799999
Q 002465 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (919)
Q Consensus 402 ~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a 481 (919)
|.+++++++.+.++++.+++.++..++|+++.||.+++|++++++.++++.....|+..+++.+++.+.+ +++.||..|
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a 462 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAA 462 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_conf 9998635688998799999999987179988999999999999998861104789999999999999858-988899999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999871189764347579999999997515885699999999999998638778--975844668999998501771
Q 002465 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDK 559 (919)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~--~~~~~~i~~~L~~~l~~~~~~ 559 (919)
++++..+++.++.. +.||++.+++.|...+++.+......++.+++.++...+..+ .+|++.++|.+.+.+....+.
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999973676-67679999999999998837479999999999999974243136789999889999998733304
Q ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-------------CCC-CCCCHHHHHHHHHHHHHHHHC
Q ss_conf 000014699999999996528443366499999999998368-------------899-997013799999999997805
Q 002465 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-------------QME-TDDPTTSYMLQAWARLCKCLG 625 (919)
Q Consensus 560 ~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~-------------~~~-~~~~~~~~~~~~~~~l~~~~g 625 (919)
...++ .+++|++.++.++| ..|.||++.+++.++++... ..+ .+...+..++.+++.++..+|
T Consensus 542 -~~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~ 618 (852)
T 4fdd_A 542 -DKDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG 618 (852)
T ss_dssp -CTTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG
T ss_pred -CHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -69999-99999999999974-8679889999999999999999999875338866688761199999999978999874
Q ss_pred CCCCCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8851313--65369999862569982224789876444688854102202890466401069889999999999999940
Q 002465 626 QDFLPYM--SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (919)
Q Consensus 626 ~~~~~~l--~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~~~~~~~ 703 (919)
.+|.+|+ +.+++.++..++.+ . .+.+..|..+++.++..++
T Consensus 619 ~~~~~~~~~~~~~~~l~~~l~~~-~------------------------------------~~vr~~a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 619 GNIEQLVARSNILTLMYQCMQDK-M------------------------------------PEVRQSSFALLGDLTKACF 661 (852)
T ss_dssp GGGHHHHHTCCHHHHHHHHTTCS-S------------------------------------HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHCCCCHHHHHHHHHCCC-C------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 76998836771899999983899-8------------------------------------4499999999999999816
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCH
Q ss_conf 104452998899870034876995799999983799999999999808999999799999999999999999810-9979
Q 002465 704 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK-EPDT 782 (919)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-e~~~ 782 (919)
..+.||++.+++.+.+.++.. ...+|..++.+++.++..... .+..+...+++.+++.+.. +...
T Consensus 662 ~~~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~~~-------------~~~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 662 QHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMGI-------------EMQPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp GGTGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHHGG-------------GGGGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 888987999999999876942-068999999999999997117-------------678789999999999857998872
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999984999999899999999999999889879999997207789967645634443659999999999
Q 002465 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (919)
Q Consensus 783 ~~~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~d~~~~~~~~e~~e~~~~l~~~~~~ 862 (919)
.++.+++.+++++...++..+ ..++.+++......|.. .+| .+ .+..+.+
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~-~~~l~~~~~~~~~~l~~-------------~~d--~~--------------e~~~a~~ 777 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEV-APMLQQFIRPWCTSLRN-------------IRD--NE--------------EKDSAFR 777 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-GGGHHHHHHHHHHHHHT-------------SCS--SH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHCC-------------CCC--CH--------------HHHHHHH
T ss_conf 077889999999998688976-75589999999998653-------------666--07--------------9999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998000514649898976854216999998899999999998731002
Q 002465 863 ILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCRE 915 (919)
Q Consensus 863 ~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (919)
.++.+++.+++...+.|..+...+..+-. ++...+..-.-++..+=+..|+
T Consensus 778 ~l~~li~~~p~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~~~~~ 828 (852)
T 4fdd_A 778 GICTMISVNPSGVIQDFIFFCDAVASWIN--PKDDLRDMFCKILHGFKNQVGD 828 (852)
T ss_dssp HHHHHHHHCGGGTGGGHHHHHHHHHTCSS--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999986918688889999999870689--9789999999999999876772
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=517.73 Aligned_cols=794 Identities=17% Similarity=0.245 Sum_probs=639.7
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCC-------
Q ss_conf 9907899999994-2899388899999998866019339999999997069-997799889999997503587-------
Q 002465 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (919)
Q Consensus 19 ~d~~~l~~~l~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~r~~a~i~L~~~i~~~~------- 89 (919)
||++++.++|..+ ++||++.|++|+++|+++++.+++.+...|++++.++ .++.+|++|+++||+.+.+++
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 874557-898789999999989984164276999999999999852169999301599999830299-856798999999
Q 002465 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (919)
Q Consensus 90 ~~~w~~-l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l 167 (919)
...|.. ++++.+..+|+.+++.+.+ ++..+|++++.+++.+++.++|.+.||++++.+.+.+.++ ++..|+.++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 97676629999999999999998779-96379999999999999846764554999999999872689789999999999
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9935666421---1211999999999753799-99589999999999999830681026578645899999999998269
Q 002465 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (919)
Q Consensus 168 ~~i~~~~~~~---l~~~~~~l~~~l~~~l~~~-~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~ip~il~~l~~~l~~~ 243 (919)
+.+++..++. +.++.+.+++.+..++.++ .+..||..+++++..++.++........ ..+.+++.+...+++.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~---~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG---ERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHCCC
T ss_conf 9999727843567898899999999984157999878999999999999999998706766---8999999999986599
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC----------CHHH
Q ss_conf 9678999999999987348188899399-9999999963488867468899999999999610035----------2232
Q 002465 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA----------PGMM 312 (919)
Q Consensus 244 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~ii~~l~~~~~~~~~~~~vr~~al~~l~~l~~~~~~~----------~~~~ 312 (919)
++.+|..++.+|..+++.++..+.+++. .+++.++..+. +.++.+|..++++|..+++..... |...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8899999999999999998899999889999999999873--77278999999999999987886433321035773256
Q ss_pred -HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf -0263569999999998424799984434689987554677612038889999998719974358799779883289887
Q 002465 313 -RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (919)
Q Consensus 313 -~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (919)
+...+++..++|.++..|.+.+++ +++++++.+..+..++..++..++ +.+++.+++.+...+++.+|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999988999999998706653----------012468689999999999998740-86899999999987579972
Q ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHC
Q ss_conf 799999999999997409-99898299999999830789887699999999998553310447-8633441699999622
Q 002465 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (919)
Q Consensus 392 ~~r~aal~~l~~i~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (919)
+.|++++.+++.+++++. +.+.++++.+++.++..+.|+++.||.++++++++++..+++.+ ...+++.+++.+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 69999999999998599878889989999999998828995999999999999999873540487888999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 699994799999999999871189---76434757999999999751588--5699999999999998638778975844
Q 002465 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (919)
Q Consensus 470 ~d~~~~~v~~~a~~al~~l~~~~~---~~~l~~~l~~il~~L~~~l~~~~--~~v~~~~l~al~~l~~~~~~~~~~~~~~ 544 (919)
.+ + +.||..+++++..+++.++ ...+.||++.+++.|+..+.+.+ ..+|..++.+++.++...+..+.+|+..
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CC-C-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 44-7-289999999999999862313542468999999999999985758615899999999999999762656999999
Q ss_pred HHHHHHHHHHHC--------C--C-CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHH
Q ss_conf 668999998501--------7--7-1000014699999999996528443366499999999998368899997-01379
Q 002465 545 VMPFLKAILVNA--------T--D-KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSY 612 (919)
Q Consensus 545 i~~~L~~~l~~~--------~--~-~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-~~~~~ 612 (919)
++|.+.+.+... . + +....+|..++++++.++..+|. .+.||.+.+++.+....... +. .++..
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~---~~~~v~~~ 617 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKK---DSAFIEDD 617 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHST---TGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC---CCCCHHHH
T ss_conf 999999999988753201388556777999999999999999998556-34789999999999997467---88757999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 99999999978058851313653699998625699822247898764446888541022028904664010698899999
Q 002465 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (919)
Q Consensus 613 ~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~ 692 (919)
++.+++.++..+|.+|.||++.++|.++..++.+ + . +.+..|+
T Consensus 618 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-~-----------------~-------------------~vr~~a~ 660 (861)
T 2bpt_A 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQV-D-----------------S-------------------PVSITAV 660 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT-T-----------------S-------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C-----------------H-------------------HHHHHHH
T ss_conf 9999999999976609999999999999886556-6-----------------7-------------------8999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999940104452998899870034876-99579999998379999999999980899999979999999999999
Q 002465 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (919)
Q Consensus 693 ~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (919)
.+++.++..+|..+.||++.+++.+...+.+. .+..+|..++.+++.++..+. ..+..++..++|.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-------------~~~~~~l~~~l~~ 727 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-------------ADFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_conf 999999987454031119999999999727865567665999999999999840-------------5089999999999
Q ss_pred HHHHHHCCC---C-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999981099---7-------999999999999999984999999899999999999999889879999997207789967
Q 002465 772 LVEALHKEP---D-------TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAE 841 (919)
Q Consensus 772 l~~~l~~e~---~-------~~~~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~d~~ 841 (919)
+++.+.... + ..++..+++++..++...|.. ++.+...+..+...+..... +.+
T Consensus 728 l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~--~~~~~~~~~~i~~~l~~~~~----------d~~---- 791 (861)
T 2bpt_A 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK--PEALFPYVGTIFQFIAQVAE----------DPQ---- 791 (861)
T ss_dssp HHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHGGGHHHHHHHHHHHHH----------CHH----
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHC----------CCC----
T ss_conf 99997367899975889999999999999999999998267--78899999999999999874----------855----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Q ss_conf 645634443659999999999999999980-005146498-98976854216--999998899999999998
Q 002465 842 ESELIKEENEQEEEVFDQVGEILGTLIKTF-KAAFLPFFD-ELSSYLTPMWG--KDKTAEERRIAICIFDDV 909 (919)
Q Consensus 842 ~~~~~~e~~e~~~~l~~~~~~~l~~l~~~~-~~~~~~~~~-~l~~~~~~~l~--~~~~~~~~~~~~~~~~~~ 909 (919)
.+++..++..++.+++.+++.. |+.|.+++. .++|.+++.++ .+.+.+.+..|--....+
T Consensus 792 --------~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 792 --------LYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp --------HHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf --------5786999999999999999882882488987267999999988535578877899999999999
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=485.25 Aligned_cols=797 Identities=18% Similarity=0.234 Sum_probs=626.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCCC-------CCCCC
Q ss_conf 8999999942899388899999998866019339999999997069-997799889999997503587-------87455
Q 002465 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (919)
Q Consensus 23 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~-~~~~~r~~a~i~L~~~i~~~~-------~~~w~ 94 (919)
++.++|+++++||+++|++|+++|+++.+.++..+...|++++.++ .++.+|++|++.||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7898789999999989984164276999999999999852169999301599999830299--85679899999999356
Q 002465 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (919)
Q Consensus 95 ~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~i~~ 172 (919)
.++++.+..+|+.+++.+.++ +..+ +.++.+++.+++..++...||++++.+.+.+.++ ++..|..++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTTC-CSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 699999999999999986799-4788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 66-42112119999999997537999-95899999999999998306810265786458999999999982699678999
Q 002465 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (919)
Q Consensus 173 ~~-~~~l~~~~~~l~~~l~~~l~~~~-~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~ip~il~~l~~~l~~~~~~~~~~ 250 (919)
.. ++.+.++.+.+++.+.+++.++. +..+|..+++++..++.+++.......+ .+.+++.+...+.+.++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~---~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE---RHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHH---HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCCHHHHHH
T ss_conf 4587667867999999999861679998899999999999999999998871789---9999999998717998899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC-------------CC--HHHHC
Q ss_conf 999999987348188899399-999999996348886746889999999999961003-------------52--23202
Q 002465 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (919)
Q Consensus 251 a~~~l~~l~~~~~~~~~~~~~-~ii~~l~~~~~~~~~~~~vr~~al~~l~~l~~~~~~-------------~~--~~~~~ 314 (919)
++++|..++..++..+.+++. .+++.++.... +.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 999999999986999998877899999999963--873499999999999998878767665100112477754201899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 63569999999998424799984434689987554677612038889999998719974358799779883289887799
Q 002465 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (919)
Q Consensus 315 ~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (919)
..+++..+++.++..+...+++ ++++++..+..+..++..++..++ +.+++.+++.+...+++++|++|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d----------~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDEN----------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS----------CCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9998988707999875313344----------454521799999999999998775-86699999999988469982899
Q ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997409-99898299999999830789887699999999998553310447-8633441699999622699
Q 002465 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (919)
Q Consensus 395 ~aal~~l~~i~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~il~~l~~~l~d~ 472 (919)
++++.+++.+++++. +.+.++++.+++.++..++|+++.||.+|++++++++..+++.. ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999748877789999999999999986799789999999999999985720114477799999999998758-
Q ss_pred CCHHHHHHHHHHHHHHHHCCC-------------CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 994799999999999871189-------------7643475799999999975158---856999999999999986387
Q 002465 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (919)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-------------~~~l~~~l~~il~~L~~~l~~~---~~~v~~~~l~al~~l~~~~~~ 536 (919)
+ +.|+..+++++..+++.++ .+.+.||++.+++.|...+.+. +..+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 8-889999999999999985020123444455540321576999999999997276742046999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHHHHC--------CCCC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78975844668999998501--------7710---000146999999999965284433664999999999983688999
Q 002465 537 HFQKYYDAVMPFLKAILVNA--------TDKS---NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET 605 (919)
Q Consensus 537 ~~~~~~~~i~~~L~~~l~~~--------~~~~---~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~ 605 (919)
.+.+|+..+++.+...+... ++.+ ...++..++.+++.++..+|.+.+.||.+.+++.++++..... .
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 620 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA-G 620 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 118999999999999999999887124886359999999999999999999982854205789999999999998536-8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHH
Q ss_conf 97013799999999997805885131365369999862569982224789876444688854102202890466401069
Q 002465 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVL 685 (919)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (919)
...++..++.+++.++..+|..|.||++.++|.+...+.... . .
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-------------------~-----------------~ 664 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA-------------------E-----------------Y 664 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT-------------------T-----------------H
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------------H-----------------H
T ss_conf 888508999999999999876099999999999999875865-------------------0-----------------8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 889999999999999940104452998899870034876-9957999999837999999999998089999997999999
Q 002465 686 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL 764 (919)
Q Consensus 686 ~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 764 (919)
+.|..|+.+++.++...+..+.||++.+++.+...+... .+.++|..++.+++.+...... .+..+
T Consensus 665 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-------------~~~~~ 731 (876)
T 1qgr_A 665 QVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-------------EFKKY 731 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-------------GGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCH-------------HHHHH
T ss_conf 79999999999999988785464599999999997487123387639999999999997035-------------27999
Q ss_pred HHHHHHHHHHHHHCCC---C-------HHHHHHHHHHHHHHHHHHCCCC---C--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999981099---7-------9999999999999999849999---9--9899999999999999889879999
Q 002465 765 SDFIIPALVEALHKEP---D-------TEICASMLDSLNECIQISGPLL---D--EGQVRSIVDEIKQVITASSSRKRER 829 (919)
Q Consensus 765 ~~~~~~~l~~~l~~e~---~-------~~~~~~~~~~l~~~i~~~g~~~---~--~~~~~~~~~~~~~~l~~~~~~~~~~ 829 (919)
+..++|.+.+.+.... + ..++..++.++..+++..|... . .+.+...++.+...+....
T Consensus 732 l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------ 805 (876)
T 1qgr_A 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA------ 805 (876)
T ss_dssp HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH------
T ss_conf 99999999999855589997588999999999999999999999745755555438899999999999999986------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHH-HHHHHHHHH-HHCCCCCHHHHHHHHHHH
Q ss_conf 99720778996764563444365999999999999999998000-514649-898976854-216999998899999999
Q 002465 830 AERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKA-AFLPFF-DELSSYLTP-MWGKDKTAEERRIAICIF 906 (919)
Q Consensus 830 ~~~~~~~d~d~~~~~~~~e~~e~~~~l~~~~~~~l~~l~~~~~~-~~~~~~-~~l~~~~~~-~l~~~~~~~~~~~~~~~~ 906 (919)
.+++. +..++..++.+++.++...|. .+.+++ ..+++.+.. .++ +++...|..|...+
T Consensus 806 ----~~~~~--------------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~-~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 806 ----GDEDH--------------TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKTLARWAT 866 (876)
T ss_dssp ----TCSCC--------------CHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred ----CCCCC--------------CHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_conf ----58888--------------889999999999999988284889999704899999998754-68876899999999
Q ss_pred HHHHHHHH
Q ss_conf 99873100
Q 002465 907 DDVAEQCR 914 (919)
Q Consensus 907 ~~~~~~~~ 914 (919)
+.+.+..+
T Consensus 867 ~~~~~~~~ 874 (876)
T 1qgr_A 867 KELRKLKN 874 (876)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99997534
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=430.52 Aligned_cols=754 Identities=12% Similarity=0.149 Sum_probs=534.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCCCCCC---
Q ss_conf 9907899999994289938889999999886601933999999999706-999779988999999750358787455---
Q 002465 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (919)
Q Consensus 19 ~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~-~~~~~~r~~a~i~L~~~i~~~~~~~w~--- 94 (919)
.|.+++.++|...++||++.| ||++|+++++ +|+. ...|++++.+ +.+..+|++|+++|||.+.++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~~-~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~ 73 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDGF-GLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDEN 73 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STTH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSS
T ss_pred CCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHC-CCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCC
T ss_conf 759999999997659987899--9999998555-9988-99999998657988889999999999999854----88765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---78987899999999899841642769999999999998521699993015999998302998567989999999935
Q 002465 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (919)
Q Consensus 95 ---~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~i~ 171 (919)
.++++.+..||+.+++.+..+ +..+|++++.+++.+++.++| +.||++++.+.+.+++++...+.+++.++..++
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 678899899999999999999808-799999999999999986171-301579999999847898899999999999999
Q ss_pred HHHHHH-------------CCCCHHHHHHHH---HHHHCCCCC--HHHH------HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 666421-------------121199999999---975379999--5899------9999999999983068102657864
Q 002465 172 QYIGDT-------------LTPHLKHLHAVF---LNCLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQD 227 (919)
Q Consensus 172 ~~~~~~-------------l~~~~~~l~~~l---~~~l~~~~~--~~vr------~~al~~l~~l~~~~~~~~~~~~~~~ 227 (919)
+..... +..+.+.+++++ .++++++.+ ..++ ..+++++..+... . ....+..
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~-~---~~~~~~~ 227 (960)
T 1wa5_C 152 KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ-D---IPEFFED 227 (960)
T ss_dssp GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS-C---CCHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC-C---CHHHHHH
T ss_conf 99887614847789999999998999999999999998735798799999999999999999998625-6---5599999
Q ss_pred HHHHHHHHHHHHHHC------CC---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC---CCCCCHH
Q ss_conf 589999999999826------99---------67899999999998734818889939999999999634---8886746
Q 002465 228 LLPLMMRTLTESLNN------GN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEG 289 (919)
Q Consensus 228 ~ip~il~~l~~~l~~------~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~ii~~l~~~~~---~~~~~~~ 289 (919)
.++.+++.+...+.. .+ +.+++.+++++..+.+.+++.|.+++..+++.++..+. +...++.
T Consensus 228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 89999999999976899855578553313279999999999999999998999999999999999999984377767289
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCC--HHHHHHHH-HHHHHHHCCCC-CCCCCCCCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 88999999999996100352232026--35699999-99998424799-98443468998-----755467761203888
Q 002465 290 TRHLAIEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIE-DDPLWHSAETE-----DEDAGESSNYSVGQE 360 (919)
Q Consensus 290 vr~~al~~l~~l~~~~~~~~~~~~~~--~~~~~~li-~~l~~~l~~~~-~~~~w~~~~~~-----~ed~~~~~~~~~a~~ 360 (919)
++..++++|.++++.+ .....+ ++++..++ +.+++.|...+ +.+.|..+.++ .++++.++.+.++..
T Consensus 308 ~~~~al~fl~~~~~~~----~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRIP----KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp HHHHHHHHHHHHHTSH----HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCH----HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 9999999999996867----689987685189999999968734888878998844999999863575512371889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHH---CHHHHHH-----HHHHH-HHHHHH
Q ss_conf 999999871997435879977988328------98877999999999999974---0999898-----29999-999983
Q 002465 361 CLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEG---CAKVMVK-----NLEQV-LSMVLN 425 (919)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~i~~~---~~~~~~~-----~l~~i-i~~l~~ 425 (919)
+++.++..++ +.+++.+++++.+.++ +.+|+.|+++++++|+++++ +...... .+..+ ...+++
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999701-327899999999999873669612179999999999999987412567741234435699999997378
Q ss_pred HCCCC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----------
Q ss_conf 07898---87699999999998553310447863344169999962269999479999999999987118----------
Q 002465 426 SFRDP---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC---------- 492 (919)
Q Consensus 426 ~l~d~---~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~al~~l~~~~---------- 492 (919)
.+.|+ ++.||.+++|++|++++++. ..++..+++.+++.+.+ +++.|+.+||.|+.+|++..
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHCCCCCCCCEEHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7449988883303989999999886589----99999999999998489-972199999999999984436444665443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHH
Q ss_conf 976434757999999999751588-----5699999999999998638778975844668999998501-7710000146
Q 002465 493 TPEILTPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRA 566 (919)
Q Consensus 493 ~~~~l~~~l~~il~~L~~~l~~~~-----~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~~~~lr~ 566 (919)
....+.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.|...+... .+++...++.
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~ 617 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTH 617 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 59875646999999999999714678776432279999999999988886124799999999999999973989727889
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHCC
Q ss_conf 99999999996528443366499999999998368899997013799999999997805885131365369999--8625
Q 002465 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL--QSAQ 644 (919)
Q Consensus 567 ~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll--~~~~ 644 (919)
.+++|++.++++.+++.+.++.+.+++.+..+..... .....+++..++.+.... ..|.+|+..++|.++ ..++
T Consensus 618 ~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 618 YTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHHHHC
T ss_conf 9999999999638953699999999999999998605---766999999999999735-478899999999980999855
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHHH---HHHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
Q ss_conf 6998222----47898764446888541022028904664010698---8999999999999994010-44529988998
Q 002465 645 LKPDVTI----TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE---EKATACNMLCCYADELKEG-FFPWIDQVAPT 716 (919)
Q Consensus 645 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~k~~a~~~l~~~~~~~~~~-~~p~~~~~~~~ 716 (919)
....+.. .+.-.......... ++.+ +++....+. .+..|+.+++.++..++.. |.||++.+++.
T Consensus 694 ~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~------l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~ 765 (960)
T 1wa5_C 694 LKGNIPAVTRLLKSFIKTDSSIFPD--LVPV------LGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVL 765 (960)
T ss_dssp CTTTHHHHHHHHHHHHHHHGGGCSC--SHHH------HHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCHHHHHH--HHHH------HHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 7787355899999999768499999--9999------9999999679942035999999999979877789889999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH---------HHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 70034876995799999983799999999999808999999799999---------999999999999810997999999
Q 002465 717 LVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ---------LSDFIIPALVEALHKEPDTEICAS 787 (919)
Q Consensus 717 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~l~~e~~~~~~~~ 787 (919)
+...+.....+..++..+..+..++.... ++.+.+ ....+...++..+.+-.....+..
T Consensus 766 l~~~l~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~ 833 (960)
T 1wa5_C 766 LLQRLQNSKTERYVKKLTVFFGLISNKLG------------SDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKI 833 (960)
T ss_dssp HHHGGGSSCCHHHHHHHHHHHHHHHHHHC------------HHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCC------------HHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCHHHHHH
T ss_conf 99998317747499999999999998708------------799999998416058999999985366030167898999
Q ss_pred HHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999984---9999998999999999999998
Q 002465 788 MLDSLNECIQIS---GPLLDEGQVRSIVDEIKQVITA 821 (919)
Q Consensus 788 ~~~~l~~~i~~~---g~~~~~~~~~~~~~~~~~~l~~ 821 (919)
++-++..++... +... .+....+++.+..++.+
T Consensus 834 ~~~gl~~ll~~~~~~~~~~-~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 834 ALIGVLNMVINGQFFQSKY-PTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHHHSCHHHHHHC-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHC
T ss_conf 9999999986512230357-88899999999999708
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=413.02 Aligned_cols=769 Identities=13% Similarity=0.155 Sum_probs=539.1
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99907899999994289938889999999886601933999999999706999779988999999750358787455789
Q 002465 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (919)
Q Consensus 18 ~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~r~~a~i~L~~~i~~~~~~~w~~l~ 97 (919)
.+|.+++.+++..+.+||++.|++|+++|+++++ +|+.+ ..+.+++..+.++.+|++|++.|++.+.++ |..++
T Consensus 3 ~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 76 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVP 76 (971)
T ss_dssp --------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----HHHCC
T ss_conf 6559999999998769999999999999999874-97989-999999835994989999999999999715----86499
Q ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC------CHHHHHHHHHHHHH
Q ss_conf 8789999999989984164--276999999999999852169999301599999830299------85679899999999
Q 002465 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQ 169 (919)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~--~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~------~~~~r~~al~~l~~ 169 (919)
++.+..+|+.+++.+.... ++.+|++++.+++.+++.++| .||++++.+.+.++++ ++..++.++.++..
T Consensus 77 ~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 77 PENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999999986799878999999999999997062--243799999999715334567878899999999998
Q ss_pred HHHHHH------------HHCCCCHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHH--HHCCC---------
Q ss_conf 356664------------211211999999999753799995-------899999999999998--30681---------
Q 002465 170 LSQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQ--CLTSS--------- 219 (919)
Q Consensus 170 i~~~~~------------~~l~~~~~~l~~~l~~~l~~~~~~-------~vr~~al~~l~~l~~--~~~~~--------- 219 (919)
+++.+. +.+..+.+.+++.+.+.+++..+. .++..+++|+..++. +++..
T Consensus 155 l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l 234 (971)
T 2x1g_F 155 IPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVL 234 (971)
T ss_dssp HHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 59988246857899999999998799999999999855467888864236799999999999825783865663199999
Q ss_pred ---------------------C-----------------------HHHHHHHHHHHHHHHHHHH---HHCCCH---HHHH
Q ss_conf ---------------------0-----------------------2657864589999999999---826996---7899
Q 002465 220 ---------------------A-----------------------DRDRFQDLLPLMMRTLTES---LNNGNE---ATAQ 249 (919)
Q Consensus 220 ---------------------~-----------------------~~~~~~~~ip~il~~l~~~---l~~~~~---~~~~ 249 (919)
. ....+..++|.+++..... ..+++. +...
T Consensus 235 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~ 314 (971)
T 2x1g_F 235 LEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIV 314 (971)
T ss_dssp HHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 86435530232356655567677479999999999997680113208899999999998689999998565654068999
Q ss_pred HHHHHHHHHHCCCCHHHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH-C-----CCC
Q ss_conf 999999998734818889-----------93999999999963488---867468899999999999610-0-----352
Q 002465 250 EALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAP 309 (919)
Q Consensus 250 ~a~~~l~~l~~~~~~~~~-----------~~~~~ii~~l~~~~~~~---~~~~~vr~~al~~l~~l~~~~-~-----~~~ 309 (919)
..++.+..+++.++..+. +++..+++.++.+..++ ..+++++..++++|..+++.. . ..+
T Consensus 315 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~ 394 (971)
T 2x1g_F 315 HIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKH 394 (971)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999999999987315765354999999999999975888888631245878999999999997413310008
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC-
Q ss_conf 2320263569999999998424799984434689987554677612038889999998719974358799779883289-
Q 002465 310 GMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA- 388 (919)
Q Consensus 310 ~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~- 388 (919)
.......+++..+++.++..+...++ .+|...+. +|.++..+.+..+.+++..++..++ +.+++.+++.+...+++
T Consensus 395 ~~~~~~~~~~~~ll~~l~~~~~~p~~-~~~~~~d~-~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~ 471 (971)
T 2x1g_F 395 KCWEYIKPLYAHLTRILVRKSEQPDE-KSLAKWSS-DDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADL 471 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCT-TTTSCSCH-HHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998619996-24335677-5799999999999999999999970-999999999999999734
Q ss_pred ----CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf ----8877999999999999974099989829999999983078--9887699999999998553310447863344169
Q 002465 389 ----PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (919)
Q Consensus 389 ----~~~~~r~aal~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il 462 (919)
.+|+.|++++.+++++++++.+...++++.+++. +..+. |+++.||..+++++|++++++.... .|+..++
T Consensus 472 ~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~-l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl 548 (971)
T 2x1g_F 472 QRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRV-LAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAI 548 (971)
T ss_dssp HHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHH-HHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHHHHH
T ss_conf 68987389999999999999835480334779999999-98567653678999999999998788886088--9899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 99996226999947999999999998711897643475799999999975158--85699999999999998638-7789
Q 002465 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQ 539 (919)
Q Consensus 463 ~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~--~~~v~~~~l~al~~l~~~~~-~~~~ 539 (919)
+.++..+ + +.|+..|+.++..+++.++ ..+.||++.+++.+...++.+ +...+..++.+++.++...+ ..+.
T Consensus 549 ~~l~~~l-~---~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N---SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H---SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHH-C---HHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9999874-8---5889999999999999988-862300799999999997278999289999999999999729999999
Q ss_pred HHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 758446689999985017-----71000014699999999996528------------4433664999999999983688
Q 002465 540 KYYDAVMPFLKAILVNAT-----DKSNRMLRAKSMECISLVGMAVG------------KDKFRDDAKQVMEVLMSLQGSQ 602 (919)
Q Consensus 540 ~~~~~i~~~L~~~l~~~~-----~~~~~~lr~~ai~~l~~l~~~~~------------~~~~~~~~~~i~~~l~~l~~~~ 602 (919)
+|+..+++.+...+.... +++.......++++++.+.++++ .+.+.++.+++++.+..+...
T Consensus 624 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~- 702 (971)
T 2x1g_F 624 KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM- 702 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999899999999985689982259999999999999984167776853334567883699999999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEEC
Q ss_conf 99997013799999999997805885131365369999862569982224789876444688854102202890466401
Q 002465 603 METDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKT 682 (919)
Q Consensus 603 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (919)
...+.++.+.+..++++++..+|.++.||+|.+++.++..++..+.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---------------------------------- 748 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---------------------------------- 748 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC----------------------------------
T ss_conf 4363789999999999999861440425278999999999866883----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCCH----HHHHHHHCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 06988999999999999994010--44529----9889987003487------699579999998379999999999980
Q 002465 683 SVLEEKATACNMLCCYADELKEG--FFPWI----DQVAPTLVPLLKF------YFHEEVRKAAVSAMPELLRSAKLAIEK 750 (919)
Q Consensus 683 ~~~~~k~~a~~~l~~~~~~~~~~--~~p~~----~~~~~~l~~~l~~------~~~~~vr~~a~~~l~~l~~~~~~~~~~ 750 (919)
..++.+++.++..+|.. +.+.+ ..+...+...+.. ..++++++..+..+..+++.+.....
T Consensus 749 ------~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~- 821 (971)
T 2x1g_F 749 ------APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE- 821 (971)
T ss_dssp ------HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG-
T ss_pred ------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHC-
T ss_conf ------4999999999999588900589999999999999999986065467764844899999999999986859981-
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 89999997999999-9999999999981099799999999999999998499999989999999999999-988987999
Q 002465 751 GLAPGRNESYVKQL-SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI-TASSSRKRE 828 (919)
Q Consensus 751 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~l-~~~~~~~~~ 828 (919)
.+ .+ +..+++..+..+.. .++....+++..+..++...+. .+.+..++......+ ......-
T Consensus 822 ------~s----~~~l~~i~~~~~~~l~~-~~~~~~~s~~~fl~~~i~~~~~---~~~~~~~~~~~g~~l~~~l~~~~-- 885 (971)
T 2x1g_F 822 ------DK----TLAYDRLVFYAQRGMTL-PESGAIRNSIQFLTHFVMQSRN---HAHVTEVVLATGEQTLYTAMMCV-- 885 (971)
T ss_dssp ------CT----TSCHHHHHHHHHHHHTS-SCSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ------CC----CCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf ------88----21289999999998287-8778999999999999860785---68999999996799999999975--
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9997207789967645634443659999999999999999980005146498989
Q 002465 829 RAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 883 (919)
Q Consensus 829 ~~~~~~~~d~d~~~~~~~~e~~e~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~ 883 (919)
.+.- . ....+.+++++..+++.+|+.+.+++...+
T Consensus 886 -----~~~~-~--------------~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 886 -----GYLT-P--------------RSQVDKFADILLAMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp -----HTTS-C--------------GGGGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCC-C--------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf -----6469-7--------------567899999999999978599999999982
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=412.10 Aligned_cols=764 Identities=17% Similarity=0.204 Sum_probs=544.9
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9990789999999-428993888999999988660193399999999970699977998899999975035878745578
Q 002465 18 GPDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (919)
Q Consensus 18 ~~d~~~l~~~l~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~r~~a~i~L~~~i~~~~~~~w~~l 96 (919)
.++.+++.++++. ..++|++.|++|+++|+++++ +|+.+ ..+..++.++.++.+|++|++.|++.+.++ |..+
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l 93 (963)
T 2x19_B 20 DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDI 93 (963)
T ss_dssp CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----HHHC
T ss_conf 75599999999998359798999999999999846-99999-999998657972588999999999999738----8749
Q ss_pred CHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-----CCHHHHHHHHHHHHH
Q ss_conf 98789999999989984164--27699999999999985216999930159999983029-----985679899999999
Q 002465 97 SLHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQ 169 (919)
Q Consensus 97 ~~~~~~~ik~~ll~~l~~e~--~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~-----~~~~~r~~al~~l~~ 169 (919)
+++.+..+|+.+++.+.... ++.+|++++.+++.+++.++| ..||++++.+.+.+++ +++..++.++.++..
T Consensus 94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999987489889999999999999987483-115559999999986433578747889999999986
Q ss_pred HHHHHH-------------HHCCCCHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHCC-----------------
Q ss_conf 356664-------------211211999999999753799995-8999999999999983068-----------------
Q 002465 170 LSQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFIQCLTS----------------- 218 (919)
Q Consensus 170 i~~~~~-------------~~l~~~~~~l~~~l~~~l~~~~~~-~vr~~al~~l~~l~~~~~~----------------- 218 (919)
+++... +.+..+.+.+++.+.+.+.+..+. .++..+++|+..++. +..
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~ 251 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ 251 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHHHHC
T ss_conf 89988506586999999999999878899999999982778805799999999999982-89985341689999999867
Q ss_pred ---------------------CCHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH------H
Q ss_conf ---------------------102657864589999999---9998269967899999999998734818889------9
Q 002465 219 ---------------------SADRDRFQDLLPLMMRTL---TESLNNGNEATAQEALELLIELAGTEPRFLR------R 268 (919)
Q Consensus 219 ---------------------~~~~~~~~~~ip~il~~l---~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~------~ 268 (919)
......+..+++.++..+ .......+.+.....++.+..+++.++..+. +
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 96479999999999975311245779999999999740799999998779899999999999999986999973755658
Q ss_pred HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHCCC-----CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3999999999963488---867468899999999999610035-----22320263569999999998424799984434
Q 002465 269 QLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARERA-----PGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (919)
Q Consensus 269 ~~~~ii~~l~~~~~~~---~~~~~vr~~al~~l~~l~~~~~~~-----~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~ 340 (919)
++..+++.++.+..++ ..+++++..++++|..+++..... +.......+++.++++.++..+...+ +++|.
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~-~~~~~ 410 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPS-DEEYG 410 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC
T ss_conf 99999999999975888887203454412999999999998623444578899999999999999999980998-30226
Q ss_pred CCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 689987554677-6120388899999987199743587997798832----89887799999999999997409998982
Q 002465 341 SAETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (919)
Q Consensus 341 ~~~~~~ed~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~i~~~~~~~~~~~ 415 (919)
..++ + +++++ +.+..+.+++..++...+ +.+++.+.+.+...+ .+.+|+.|++++.++|.+++++.+...++
T Consensus 411 ~~~~-d-e~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~ 487 (963)
T 2x19_B 411 FWSS-D-EKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDV 487 (963)
T ss_dssp TSCH-H-HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSH
T ss_pred CCCH-H-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7776-3-899999999999999999999706-899999999999999725799866799899999999970438224678
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999830789887699999999998553310447863344169999962269999479999999999987118976
Q 002465 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (919)
Q Consensus 416 l~~ii~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~ 495 (919)
++.+++.+. .+.++++.||..+++++|++++++.... .+++.+++.++..+++ +.|+..||.++..+++.++ .
T Consensus 488 l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~-~ 560 (963)
T 2x19_B 488 VPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECK-Y 560 (963)
T ss_dssp HHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTG-G
T ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999998-5799858999999999998888887588--9899999999987178---4689999999999999989-9
Q ss_pred CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHH
Q ss_conf 43475799999999975158--85699999999999998638-778975844668999998501----771000014699
Q 002465 496 ILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKS 568 (919)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~--~~~v~~~~l~al~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~----~~~~~~~lr~~a 568 (919)
.+.||++.+++.+...+... +...+..++.+++.++...+ +.+.+|+..+++.+.+.|... .+++....+...
T Consensus 561 ~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 640 (963)
T 2x19_B 561 DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640 (963)
T ss_dssp GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87766999999999986357898488999999999999629999999999999989999999998278987789999999
Q ss_pred HHHHHHHHHHHCH---------------------HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999965284---------------------4336649999999999836889999701379999999999780588
Q 002465 569 MECISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (919)
Q Consensus 569 i~~l~~l~~~~~~---------------------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 627 (919)
++|++.++++++. ..+.++.+.+++.+.++..... .+..+.+.+..++..++..+|.+
T Consensus 641 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999774898643322232212477778899469999999999999998566-74689999999999999750103
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 5131365369999862569982224789876444688854102202890466401069889999999999999940--10
Q 002465 628 FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK--EG 705 (919)
Q Consensus 628 ~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~~~~~~~--~~ 705 (919)
|.||+|.+++.++......+. ...+.+++.++...+ ..
T Consensus 720 ~~~~l~~~~~~l~~~~~~~~~----------------------------------------~~~l~l~~~li~~f~~~~~ 759 (963)
T 2x19_B 720 FAPMVPQLCEMLGRMYSTIPQ----------------------------------------ASALDLTRQLVHIFAHEPA 759 (963)
T ss_dssp TGGGHHHHHHHHHHHHHHSCC----------------------------------------HHHHHHHHHHHHHHTTCTT
T ss_pred CCCCHHHHHHHHHHHHHCCCC----------------------------------------CHHHHHHHHHHHHHCCCCC
T ss_conf 424079999999999875785----------------------------------------0899999999998577801
Q ss_pred CCCCHHHHHHHHCCC----CC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHHC
Q ss_conf 445299889987003----48-7-69957999999837999999999998089999997999999-99999999999810
Q 002465 706 FFPWIDQVAPTLVPL----LK-F-YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHK 778 (919)
Q Consensus 706 ~~p~~~~~~~~l~~~----l~-~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~ 778 (919)
+.|++..++..+... +. + ..++++|...+..+..+++.+....- . ... +..+++.++..+.
T Consensus 760 ~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~-------~----~~~~~~~i~~~~~~~l~- 827 (963)
T 2x19_B 760 HFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-------C----ERLDVKAVFQCAVLALK- 827 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG-------C----TTSCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHC-------C----CCCCHHHHHHHHHHHCC-
T ss_conf 37899999999999999998627655863899999999999975839872-------9----85147999999999757-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCC-C-C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99799999999999999998499-9-9---99899999999999999889879999997207789967645634443659
Q 002465 779 EPDTEICASMLDSLNECIQISGP-L-L---DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQE 853 (919)
Q Consensus 779 e~~~~~~~~~~~~l~~~i~~~g~-~-~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~d~~~~~~~~e~~e~~ 853 (919)
..++.+...++..+..++...+. . . -..+...++..+..++.+ .....
T Consensus 828 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--------------~~~~~------------- 880 (963)
T 2x19_B 828 FPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGG--------------QASRS------------- 880 (963)
T ss_dssp CSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTT--------------TSCGG-------------
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--------------CCCHH-------------
T ss_conf 897799999999999998518973789999999799999999998533--------------59846-------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999999999998000514649898
Q 002465 854 EEVFDQVGEILGTLIKTFKAAFLPFFDEL 882 (919)
Q Consensus 854 ~~l~~~~~~~l~~l~~~~~~~~~~~~~~l 882 (919)
....+++++..++..++..+..++..+
T Consensus 881 --~~~~~~~il~~l~~~~~~~~~~~l~~~ 907 (963)
T 2x19_B 881 --LMDCFADILFALNKHCFSLLSMWIKEA 907 (963)
T ss_dssp --GHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf --778899999999997719999999998
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=387.85 Aligned_cols=551 Identities=13% Similarity=0.205 Sum_probs=400.1
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 0999078999999942899388899999998866019--------33999999999706999779988999999750358
Q 002465 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (919)
Q Consensus 17 ~~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~--------p~~~~~~l~~il~~~~~~~~r~~a~i~L~~~i~~~ 88 (919)
|+.+..++.++|+.+.+||++.|.+|+..|....+.+ +...+..++..+. ++++.+|+.|+..|..+...
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~- 78 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK- 78 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH-
T ss_conf 9836769999997558987859999999999997416657875679999999999866-99989999999999999975-
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHC-CCCHHH
Q ss_conf 787455789878999999998998416427699999999999985216999--------93015999998302-998567
Q 002465 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (919)
Q Consensus 89 ~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~~~~~--------~w~~ll~~l~~~~~-~~~~~~ 159 (919)
++++....++..++..+.+ ++..+|..++.+++.++....+.. .|++++|.+.+.+. ++++..
T Consensus 79 -------~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 79 -------VKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp -------SCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred -------CCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -------8798999999999998669-83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999993566642112119999999997537999958999999999999983068102657864589999999999
Q 002465 160 QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (919)
Q Consensus 160 r~~al~~l~~i~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~ip~il~~l~~~ 239 (919)
|..++.+++.+++..+..+.++.+.+++.+...+.++ +..||..|+.+++.++...+. ..+..+++.+++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~- 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHCC-
T ss_conf 9999999999999827677887999999999987599-689999999999999985689----9999999999998616-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHH
Q ss_conf 82699678999999999987348188899399999999996348886746889999999999961003522320263569
Q 002465 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319 (919)
Q Consensus 240 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ii~~l~~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~ 319 (919)
..++..|..++.++..++...+..+.+|+..+++.++..+. +.++.+|..++.++..+++. .+ ..+.+++
T Consensus 225 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l 294 (1230)
T 1u6g_C 225 --NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR---CP---KEVYPHV 294 (1230)
T ss_dssp --TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC---TT---CCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH---CH---HHHHHHH
T ss_conf --77556899999999999998689899889999999999866--89778999999999999997---84---8777768
Q ss_pred HHHHHHHHHHHCCCCC-----CCCCCC--C---CCCCC----------CCCCCCCCCHHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 9999999984247999-----844346--8---99875----------546776120388899999987199--743587
Q 002465 320 NRLFAILMSMLLDIED-----DPLWHS--A---ETEDE----------DAGESSNYSVGQECLDRLAIALGG--NTIVPV 377 (919)
Q Consensus 320 ~~li~~l~~~l~~~~~-----~~~w~~--~---~~~~e----------d~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 377 (919)
..++|.++..+....+ +.+|.. . .++++ ++..+..+..+..++..++...+. ..+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~ 374 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999982789988876441101122334465301100136664555677999999999999997466679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 997798832898877999999999999974-------------------0999898299999999830789887699999
Q 002465 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (919)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~i~~~-------------------~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a 438 (919)
+++.+...+.+.++.+|.+++.+++.+... +...+..+++.+++.+.+.++|+++++|.++
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98999987179865799999999999999724243434675201356455999998746999999998613778799999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999985533104478633441699999622699994--79999999999987118976434757999999999751588
Q 002465 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (919)
Q Consensus 439 ~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~--~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~ 516 (919)
+.+++.++..++..+ .+|++.+++.++..+.+ +++ .++..++.++..+++..+++.+.||++.+++.++..+++.+
T Consensus 455 ~~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 455 FNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF 532 (1230)
T ss_dssp HHHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999761105-77799999999999748-7885168999999999999838988788679999999999971424
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 56999999999999986387-------78975844668999998501771000014699999999996528443366499
Q 002465 517 QMVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (919)
Q Consensus 517 ~~v~~~~l~al~~l~~~~~~-------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~ 589 (919)
..++..++.+++.++...+. .+.||++.++|.+...+... +....+|..++.+++.++...| +.+.++.+
T Consensus 533 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~ 609 (1230)
T 1u6g_C 533 YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLP 609 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf 68999999999999987167555653232789999999999987326--9988999999999999999827-03244388
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q 002465 590 QVMEVLMSL 598 (919)
Q Consensus 590 ~i~~~l~~l 598 (919)
.+++.+...
T Consensus 610 ~~l~~L~~~ 618 (1230)
T 1u6g_C 610 NTLQIFLER 618 (1230)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999988
No 8
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=383.02 Aligned_cols=721 Identities=14% Similarity=0.186 Sum_probs=507.0
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99907899999994289938889999999886601933999999999706999779988999999750358787455789
Q 002465 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (919)
Q Consensus 18 ~~d~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~l~~il~~~~~~~~r~~a~i~L~~~i~~~~~~~w~~l~ 97 (919)
.+|.+++.++++.+++|+++.|++|+++|+++++ +|+.+ ..+.+++.++.++.+|++|++.|++.+.++ |..++
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~~-~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~ 85 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLP 85 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTGG-GGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCCCC
T ss_conf 4659999999999868993899999999999883-95699-999999862998899999999999999760----70499
Q ss_pred HHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8789999999989984164--------27699999999999985216999930159999983029985679899999999
Q 002465 98 LHTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (919)
Q Consensus 98 ~~~~~~ik~~ll~~l~~e~--------~~~vr~~~~~~i~~i~~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~ 169 (919)
++.+..+|+.+++.+...+ ++.+|++++.+++.+++.++| +.||++++.+.+.++ .++..++.++.+|..
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_conf 999999999999999862776200000289999999999999997681-115479999999871-585889999999999
Q ss_pred HHHHHHH----------------HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----------
Q ss_conf 3566642----------------1121199999999975379999589999999999999830681026-----------
Q 002465 170 LSQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR----------- 222 (919)
Q Consensus 170 i~~~~~~----------------~l~~~~~~l~~~l~~~l~~~~~~~vr~~al~~l~~l~~~~~~~~~~----------- 222 (919)
+++.+.+ .+..+.+.+++.+.+++++..+..++..+++++..++.+++.....
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668889999999999999860889988605599999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHH
Q ss_conf -------------------------------5786458999999999-----------98---26996789999999999
Q 002465 223 -------------------------------DRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIE 257 (919)
Q Consensus 223 -------------------------------~~~~~~ip~il~~l~~-----------~l---~~~~~~~~~~a~~~l~~ 257 (919)
..+..+++.+++.+.. .. .+.+.+.....++.+..
T Consensus 244 ~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 244 FMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 68987679999999999994889950346889999999999999988627985417877445771028999999999999
Q ss_pred HHCCCCHH------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 87348188------899399999999996348886746889999999999961003522320263569999999998424
Q 002465 258 LAGTEPRF------LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (919)
Q Consensus 258 l~~~~~~~------~~~~~~~ii~~l~~~~~~~~~~~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~ 331 (919)
+.+.+... +.+++..+++.++.+... .+++++..++++|..+++.....+.......+++.++++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999828821479999999999998868--9089999999999999999974635899999999999999998658
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 79998443468998------755467761203888999999871997435879977988328--9887799999999999
Q 002465 332 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQ 403 (919)
Q Consensus 332 ~~~~~~~w~~~~~~------~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~ 403 (919)
..+ +.+|..+++. .+|+++++.+..+..++..++...+ ..+++.+.+.+...++ +.+|+.|+++++++|+
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 996-20000579985048653122279999999999999883698-9999999999998727787898999999999999
Q ss_pred HHHHCHHHHH-HHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9974099989-829999999983078-----9887699999999998553310447863344169999962269999479
Q 002465 404 IAEGCAKVMV-KNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (919)
Q Consensus 404 i~~~~~~~~~-~~l~~ii~~l~~~l~-----d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v 477 (919)
+++++.+... .+++.+++.+..... |+++.||..++|++|++++++... ..++..+++.++..+.+ ++++|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 8602376255799999999999877654356654999988999999779999867--89999999999998618-98789
Q ss_pred HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9999999999871189764-------347579999999997515885699999999999998638--7789758446689
Q 002465 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 548 (919)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~-------l~~~l~~il~~L~~~l~~~~~~v~~~~l~al~~l~~~~~--~~~~~~~~~i~~~ 548 (919)
+..||.++.++++.++... +.||++.++..+...+...+..-....+.+++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999889861156778775799999989999985899999999999999997599789999999999988
Q ss_pred HHHHHHHCC-----------CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC------------C-CC
Q ss_conf 999985017-----------71000014699999999996528443366499999999998368------------8-99
Q 002465 549 LKAILVNAT-----------DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------------Q-ME 604 (919)
Q Consensus 549 L~~~l~~~~-----------~~~~~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~------------~-~~ 604 (919)
+.+.|.... +.+....-...+.|++.++.++| ..|.|++..++.-++.+... + ..
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~ 715 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA 715 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999873164640487999999999999999999856-788999999999999999999998999997058502
Q ss_pred CCCCH-------HHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 99701-------379999999999780---58851313653699998625699822247898764446888541022028
Q 002465 605 TDDPT-------TSYMLQAWARLCKCL---GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (919)
Q Consensus 605 ~~~~~-------~~~~~~~~~~l~~~~---g~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (919)
...|. ...+...+....... +..+.||+|.++..++...+.. ....
T Consensus 716 ~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~-~~~~----------------------- 771 (1049)
T 3m1i_C 716 TKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNN-VPDA----------------------- 771 (1049)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHS-CGGG-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCC-----------------------
T ss_conf 2108899999999999999999998479779999987899999999988718-9632-----------------------
Q ss_pred CEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC-----C-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 90466401069889999999999999940104452998899870034-----8-76995799999983799999999999
Q 002465 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL-----K-FYFHEEVRKAAVSAMPELLRSAKLAI 748 (919)
Q Consensus 675 ~~~~~v~~~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l-----~-~~~~~~vr~~a~~~l~~l~~~~~~~~ 748 (919)
+. ..++.+++.++..+|+.+.||++.++..+.... . ...++++|+..+..+..+++.+....
T Consensus 772 ------~~------~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l 839 (1049)
T 3m1i_C 772 ------RD------AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1049)
T ss_dssp ------CC------THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred ------CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf ------36------879999999999988760666899999999999999852421089999999999999998678999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8089999997999999999999999998109979999999999999999849
Q 002465 749 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (919)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g 800 (919)
-. ..+ ..+..++...+..+. .+++.+...++..+..++...+
T Consensus 840 ~~-----~~~----~~~~~v~~~~~~al~-~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 840 LE-----LPP----AAFKLFVDAICWAFK-HNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HH-----SCH----HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HC-----CCH----HHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 75-----999----999999999999947-9981699999999999999987
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=376.66 Aligned_cols=742 Identities=13% Similarity=0.150 Sum_probs=550.7
Q ss_pred HHHHHHHHCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999706--99977998899999975035878745578987899999999899841642769999999999998521
Q 002465 58 TLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135 (919)
Q Consensus 58 ~~~l~~il~~--~~~~~~r~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e~~~~vr~~~~~~i~~i~~~~ 135 (919)
+..+.+++.. +++..+|+.|-..|++.- . .++....+. .++..+. ..+..+|..++..+....+..
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~-~---------~p~~~~~l~-~il~~~~-~~~~~vR~~a~~~Lkn~i~~~ 79 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLN-Q---------YPDFNNYLI-FVLTKLK-SEDEPTRSLSGLILKNNVKAH 79 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-T---------SHHHHHHHH-HHHHTCT-TSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-H---------CCCHHHHHH-HHHHCCC-CCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999873949899999999999987-0---------998899999-9985668-898679999999999989874
Q ss_pred CCC---CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 699---99301599999830299856798999999993566642112119999999997537999958999999999999
Q 002465 136 LPE---NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (919)
Q Consensus 136 ~~~---~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~i~~~~~~~l~~~~~~l~~~l~~~l~~~~~~~vr~~al~~l~~l 212 (919)
+.. ..-..+.+.+++.+.++++.+|..+..+++.++...+. ..++.+++.+.+.+.++ +..+|..++.+++.+
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKI 155 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
T ss_conf 47799999999999999987499899999999999999986481---35689999999987099-989999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 98306810265786458999999999982699678999999999987348188899399999999996348886746889
Q 002465 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRH 292 (919)
Q Consensus 213 ~~~~~~~~~~~~~~~~ip~il~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ii~~l~~~~~~~~~~~~vr~ 292 (919)
++..+...........++.+++.+...+++.++.+|..++.++..++...+..+.++++.+++.++..+. +.++.+|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~--d~~~~vr~ 233 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG--DEEPEVRK 233 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--CCCHHHHH
T ss_conf 9985787563431332999999999985679789999999999999864638799889999999998717--99778999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----
Q ss_conf 9999999999610035223202635699999999984247999844346899875546776120388899999987----
Q 002465 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIA---- 368 (919)
Q Consensus 293 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~~~---- 368 (919)
.+++++..+++. .+. ...+++..+++.+...+.+. +...+..+.+++..++..
T Consensus 234 ~a~~~L~~l~~~---~~~---~~~~~l~~l~~~l~~~~~~~-----------------~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 234 NVCRALVMLLEV---RMD---RLLPHMHNIVEYMLQRTQDQ-----------------DENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp HHHHHHHHHHHH---CHH---HHGGGHHHHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHHHH---CHH---HHHHHHHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHHCCHHHH
T ss_conf 999999999985---779---89988999999999870699-----------------6899999999999986036579
Q ss_pred --CCCCCCHHHHHHHHHHHH-----------CC-----------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf --199743587997798832-----------89-----------887799999999999997409998982999999998
Q 002465 369 --LGGNTIVPVASEQLPAYL-----------AA-----------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (919)
Q Consensus 369 --~~~~~~~~~l~~~l~~~l-----------~~-----------~~~~~r~aal~~l~~i~~~~~~~~~~~l~~ii~~l~ 424 (919)
+ +...+.+++.+...+ .+ .+|.+|.++..+++.++...++ ..++.+++.+.
T Consensus 291 ~~~--~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~ 365 (852)
T 4fdd_A 291 DVL--VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLK 365 (852)
T ss_dssp HHH--TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHH
T ss_conf 887--8889889999998757867679986698443222456401116999999999999874618---78999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 30789887699999999998553310447863344169999962269999479999999999987118976434757999
Q 002465 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (919)
Q Consensus 425 ~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (919)
..+.++++++|.++++++|.+++..+..+ ..+.+.+++.++..+.| +++.||..++++++.+++..+.....+|+..+
T Consensus 366 ~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 366 ELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHTTTTTHHHH-GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98559988999999999999986356889-98799999999987179-98899999999999999886110478999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 99999975158856999999999999986387789758446689999985017710000146999999999965284433
Q 002465 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (919)
Q Consensus 505 l~~L~~~l~~~~~~v~~~~l~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~ai~~l~~l~~~~~~~~~ 584 (919)
++.|+..+.+.++.+|..++.+++.++...+..+.||++.+++.|...+..... .....++++++.++.++|+...
T Consensus 444 l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~----~~~~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH----KNLLILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999985898889999999999999973676676799999999999988374----7999999999999997424313
Q ss_pred -HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCC
Q ss_conf -6649999999999836889999701379999999999780588513136536999986256998--2224789876444
Q 002465 585 -RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPD--VTITSADSDNEIE 661 (919)
Q Consensus 585 -~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~i~~~ll~~~~~~~~--~~~~~~~~~~~~~ 661 (919)
.+|.+.+++.+++.++.-.+.+... ..++.+++.++..+|..|.||++.+++.++..++..-. .....++ +.
T Consensus 520 ~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~---~~- 594 (852)
T 4fdd_A 520 KPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP---DQ- 594 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---TT-
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-
T ss_conf 67899998899999987333046999-99999999999997486798899999999999999999998753388---66-
Q ss_pred CCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6888541022028904664010698899999999999999401044529--98899870034876995799999983799
Q 002465 662 DSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPE 739 (919)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~~~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~ 739 (919)
.+.++. +-+..++++++.++..+|.++.||+ +.+++.+..++.+. +..||+.++.+++.
T Consensus 595 -~~~~d~-----------------~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~ 655 (852)
T 4fdd_A 595 -YEAPDK-----------------DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGD 655 (852)
T ss_dssp -SCCCCT-----------------HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred -CCCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf -688761-----------------19999999997899987476998836771899999983899-84499999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999980899999979999999999999999981099799999999999999998499999989999999999999
Q 002465 740 LLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI 819 (919)
Q Consensus 740 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~l 819 (919)
+.+.+. ..+..++..++|.+++.+. ..+.+++..++++++.+....|..+. .++..++..+..++
T Consensus 656 l~~~~~-------------~~~~~~l~~~lp~l~~~l~-~~~~~v~~~a~~alg~i~~~~~~~~~-p~~~~il~~L~~~l 720 (852)
T 4fdd_A 656 LTKACF-------------QHVKPCIADFMPILGTNLN-PEFISVCNNATWAIGEISIQMGIEMQ-PYIPMVLHQLVEII 720 (852)
T ss_dssp HHHHCG-------------GGTGGGHHHHHHHHHHTCC-TTSHHHHHHHHHHHHHHHHHHGGGGG-GGTHHHHHHHHHHH
T ss_pred HHHHHH-------------HHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 999816-------------8889879999999998769-42068999999999999997117678-78999999999985
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 98898799999972077899676456344436599999999999999999800051464989897685421699999889
Q 002465 820 TASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEER 899 (919)
Q Consensus 820 ~~~~~~~~~~~~~~~~~d~d~~~~~~~~e~~e~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 899 (919)
.. .+ ....++++++.++|.+++.+++.+.||+..+++.+...+....+..+|
T Consensus 721 ~~--------------~~--------------~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 721 NR--------------PN--------------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp TC--------------SS--------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred CC--------------CC--------------CCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 79--------------98--------------872077889999999998688976755899999999986536660799
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999998731002110
Q 002465 900 RIAICIFDDVAEQCREAAL 918 (919)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~ 918 (919)
..++..++.++...|+...
T Consensus 773 ~~a~~~l~~li~~~p~~~~ 791 (852)
T 4fdd_A 773 DSAFRGICTMISVNPSGVI 791 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHHHHHHCHHHHH
T ss_conf 9999999999986918688
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=367.79 Aligned_cols=729 Identities=16% Similarity=0.174 Sum_probs=540.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCC------CCC
Q ss_conf 999779988999999750358787455789878999999998998416-4276999999999999852169------999
Q 002465 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (919)
Q Consensus 68 ~~~~~~r~~a~i~L~~~i~~~~~~~w~~l~~~~~~~ik~~ll~~l~~e-~~~~vr~~~~~~i~~i~~~~~~------~~~ 140 (919)
+++..+|+.|...|++.-. +....+...+++.+.++ .+..+|..++..+........+ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~~------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9898999999999999871------------6804699999999857899879999999999876055434767899864
Q ss_pred CCHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
Q ss_conf 3015999--------99830299856798999999993566642112119999999997537999-95899999999999
Q 002465 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (919)
Q Consensus 141 w~~ll~~--------l~~~~~~~~~~~r~~al~~l~~i~~~~~~~l~~~~~~l~~~l~~~l~~~~-~~~vr~~al~~l~~ 211 (919)
|+.+.+. +.+.+.++++.. ..+..+++.++..... ..+++.+++.+.+.+.++. ++.+|..++.++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676--2256889999999870889879999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHCCCCCC
Q ss_conf 99830681026578645899999999998269--96789999999999873481888993--999999999963488867
Q 002465 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (919)
Q Consensus 212 l~~~~~~~~~~~~~~~~ip~il~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~ii~~l~~~~~~~~~~ 287 (919)
++.... .+.+...++.+++.+...+.++ ++.+|..++.++..++...+..+... ...+++.+...+. +.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSS
T ss_pred HHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC
T ss_conf 987458----76678679999999998616799988999999999999999999988717899999999998717--998
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 468899999999999610035223202635699-9999999842479998443468998755467761203888999999
Q 002465 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (919)
Q Consensus 288 ~~vr~~al~~l~~l~~~~~~~~~~~~~~~~~~~-~li~~l~~~l~~~~~~~~w~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (919)
.++|..+++++..+++. .+ +.+.+++. .+++.++..+.+.+ ...+..+.+.+..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~---~~~~~~~~~~l~~~~~~~~~~~~-----------------~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YY---QYMETYMGPALFAITIEAMKSDI-----------------DEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SG---GGCHHHHTTTHHHHHHHHHTCSS-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHCCCC-----------------HHHHHHHHHHHHHHH
T ss_conf 89999999999999998---69---99998877899999999963873-----------------499999999999998
Q ss_pred HHC-------------------CCCC----CHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 871-------------------9974----35879977988328-------98877999999999999974099989829
Q 002465 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (919)
Q Consensus 367 ~~~-------------------~~~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~i~~~~~~~~~~~l 416 (919)
... +... ..+.+++.+...+. +++|..|.++..+++.++..+++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHH
T ss_conf 87876766510011247775420189999989887079998753133444545217999999999999987758---669
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998307898876999999999985533104478633441699999622699994799999999999871189764
Q 002465 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (919)
Q Consensus 417 ~~ii~~l~~~l~d~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~il~~l~~~l~d~~~~~v~~~a~~al~~l~~~~~~~~ 496 (919)
+.+++.+...+.|+++++|.+++++++.++..+++.....+.+.++|.++..+.| +++.||..|++++..+++.++...
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHC
T ss_conf 9999999988469982899999999999974887778999999999999998679-978999999999999998572011
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -347579999999997515885699999999999998638--------------77897584466899999850177100
Q 002465 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--------------EHFQKYYDAVMPFLKAILVNATDKSN 561 (919)
Q Consensus 497 -l~~~l~~il~~L~~~l~~~~~~v~~~~l~al~~l~~~~~--------------~~~~~~~~~i~~~L~~~l~~~~~~~~ 561 (919)
..+|++.+++.++..+.+. +.++..++.+++.++...+ ..+.||++.++|.|...+..... +.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-HQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CS
T ss_pred CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CH
T ss_conf 44777999999999987588-88999999999999998502012344445554032157699999999999727674-20
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-------CCCCC-----CHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 00146999999999965284433664999999999983688-------99997-----013799999999997805-885
Q 002465 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQ-------METDD-----PTTSYMLQAWARLCKCLG-QDF 628 (919)
Q Consensus 562 ~~lr~~ai~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~-------~~~~~-----~~~~~~~~~~~~l~~~~g-~~~ 628 (919)
..+|..++++++.++..+|. .+.++...+++.++..+... ...++ .++..++.+++.++..+| ..+
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 46999999999999997743-11899999999999999999988712488635999999999999999999998285420
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 13136536999986256998222478987644468885410220289046640106988999999999999994010445
Q 002465 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708 (919)
Q Consensus 629 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~~~~~~~~~~~p 708 (919)
.||++.++|.++..++...+ . . ..+..++.+++.++..++..|.|
T Consensus 601 ~~~~~~l~~~l~~~l~~~~~------------------~--------------~---~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTAG------------------S--------------G---GVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp HTTHHHHHHHHHHHC-----------------------C--------------C---HHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHCCC------------------C--------------C---CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 57899999999999985368------------------8--------------8---85089999999999998760999
Q ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
Q ss_conf 2998899870034876995799999983799999999999808999999799999999999999999810-997999999
Q 002465 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK-EPDTEICAS 787 (919)
Q Consensus 709 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-e~~~~~~~~ 787 (919)
|++.+++.+.+.+.+..++.+|..++.+++.+++.... .+..+...+++.+++.+.. +.+.+++..
T Consensus 646 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~i~~~l~~~l~~~~~~~~~~~~ 712 (876)
T 1qgr_A 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-------------NIIPFCDEVMQLLLENLGNENVHRSVKPQ 712 (876)
T ss_dssp GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHHHHTCTTSCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999999875865087999999999999998878-------------54645999999999974871233876399
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998499999989999999999999988987999999720778996764563444365999999999999999
Q 002465 788 MLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTL 867 (919)
Q Consensus 788 ~~~~l~~~i~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~d~~~~~~~~e~~e~~~~l~~~~~~~l~~l 867 (919)
++.+++.++...|+.+. .++..++..+...+.. +.+.+++| ..++...++..+.+++..+
T Consensus 713 ~~~~l~~i~~~~g~~~~-~~l~~~~~~l~~~~~~-------------~~~~~d~~------~~~~~~~~r~~~~~~~~~i 772 (876)
T 1qgr_A 713 ILSVFGDIALAIGGEFK-KYLEVVLNTLQQASQA-------------QVDKSDYD------MVDYLNELRESCLEAYTGI 772 (876)
T ss_dssp HHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHTC-------------CCCTTCHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHC-------------CCCCCCHH------HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997035279-9999999999999855-------------58999758------8999999999999999999
Q ss_pred HHHCCC----------CCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998000----------514649898976854216999-998899999999998731002
Q 002465 868 IKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCRE 915 (919)
Q Consensus 868 ~~~~~~----------~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 915 (919)
++..|. .+.+|++.+++.+........ +...|..|++++++++++.|.
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 773 VQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp HHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99974575555543889999999999999998658888889999999999999988284
Done!