Query 002467
Match_columns 919
No_of_seqs 249 out of 847
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 16:48:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002467.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1187-1191//hhsearch_pdb/002467hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 1.0 1 1 1055.1 40.1 492 56-633 7-505 (505)
2 3k9o_A Ubiquitin-conjugating e 1.0 1 1 14.0 4.1 106 513-633 88-201 (201)
3 3e46_A Ubiquitin-conjugating e 1.0 1 1 13.7 3.8 106 513-633 140-253 (253)
4 1i1w_A Endo-1,4-beta-xylanase; 1.0 1 1 13.2 -0.4 26 355-380 104-129 (303)
5 2l3g_A RHO guanine nucleotide 1.0 1 1 12.7 0.9 35 515-549 92-126 (126)
6 1nyc_A Staphostatin B, cystein 1.0 1 1 12.2 0.4 14 622-635 21-34 (111)
7 1ta3_B Endo-1,4-beta-xylanase; 1.0 1 1 12.1 3.2 51 325-380 78-128 (303)
8 2cve_A Hypothetical protein TT 1.0 1 1 12.0 0.3 16 388-403 100-115 (191)
9 1v0l_A Endo-1,4-beta-xylanase 1.0 1 1 11.9 -0.3 52 324-381 76-127 (313)
10 2lyd_B Pacman protein; DCP1, X 1.0 1 1 11.8 -1.8 7 331-337 25-31 (38)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1055.06 Aligned_cols=492 Identities=27% Similarity=0.443 Sum_probs=425.5
Q ss_pred EEEEECCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 99864897999970689652179999289999864236873139888999987421287667783101479999989997
Q 002467 56 KLYETRARFYLIGSDRNKRFFRVLKIDRSEPSDLNISEDPVVYSPQEIKNLLQRISEGNRATGGLTFVAKVFGIAGCIKF 135 (919)
Q Consensus 56 ~Lyet~~~fyivg~~~~~~~~~vLkIDR~~~~~l~i~Ed~~~ys~~e~~~lL~~i~~gn~~~ggl~~v~~~yGIlG~Irl 135 (919)
..-+||++||++|++.....-.+|.|||.++ ++.+.+... ++ .. ..+++++||+|+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~~~-~~~~~~~~~-------------~~-----~~--~~~~~i~GilG~i~l 65 (505)
T 3lwt_X 7 VYVQNADGIFFKLAEGKGTNDAVIHLANQDQ-GVRVLGAEE-------------FP-----VQ--GEVVKIASLMGFIKL 65 (505)
T ss_dssp EEEEETTEEEEEESSCCSSCCCEEEEETTTC-CEEEECGGG-------------SC-----SS--SCCEEESEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCCCCCCEEEEECCCC-EEEECCCCC-------------CC-----CC--CCEEEEEEEEEEEEE
T ss_conf 6887798799998887888861599986998-288544566-------------88-----76--753699999999997
Q ss_pred CCCEEEEEEECEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 48158999961468556459239997312468617988675334644499999984027899866993156722023342
Q 002467 136 LESYYLILVTKRRQIGCICGHAIYSIDESQLITIPHVSIQSDVAHSKTELRYKKLLSSVDLTKDFYYSYTYPIMQSLQKN 215 (919)
Q Consensus 136 l~~~YLivIT~r~~VG~I~Gh~IY~I~~t~~Ipi~~~~~~~~~~~s~dE~ry~klL~sv~lt~~FYFSytYDLT~SLQ~n 215 (919)
++++||+|||+++.||.|+||.||+|++++|||++.+. ...++|.+|+++|+.++++++|||||+||||+++|++
T Consensus 66 ~~~~YlivIT~~~~vg~i~gh~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~ 140 (505)
T 3lwt_X 66 KLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRN 140 (505)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHH
T ss_pred CCCCEEEEEECCEEEEEECCEEEEEEEEEEEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHC
T ss_conf 89838999975389889899588999878999926863-----4684599999999998658978995880877304440
Q ss_pred HHCCC-CCCCCCCCCCCCCHHCCHHHHHHC----CCCCEEEEEEEEEEEEEEEEEECCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 20134-589996651103022217788303----7874477656567885899880311389999753015666434444
Q 002467 216 VLSMA-EEGMPYENIFVWNAYLTQPIRLRC----KNTIWTIALVHGHFKQIRLSIFGRDFSVSLISRRSRHFAGTRYLKR 290 (919)
Q Consensus 216 ~~~~~-~~~~~~d~rFvWN~~Ll~~lr~~~----~~~~w~vpLIqGFv~q~~~~i~g~~~~ltLISRRS~~rAGTRY~~R 290 (919)
..... ..+..+|++|+||++|+++|+... ....|++|+||||+++..+.+.|+.+.+|||||||++||||||++|
T Consensus 141 ~~~~~~~~~~~~d~~F~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~R 220 (505)
T 3lwt_X 141 EKVGPAASWKTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRR 220 (505)
T ss_dssp HHHCSCCCGGGSCTTTCTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSS
T ss_pred CCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCC
T ss_conf 45576654347787255017888999975226752354666762476377899987903899999987314687643355
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 68999862303667699972766788772799999752721134744788898752676478960689999999999872
Q 002467 291 GVNDRGRVANDVETEQVVLDEEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRY 370 (919)
Q Consensus 291 GIDd~G~VANfVETEQIV~~~~~~~~~~~isSfVQiRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rY 370 (919)
|||++|+|||||||||||+.+...+.+..++||||+||||||||+|.+ .+.+||+|.+. +++++||.+||++|.++|
T Consensus 221 Gidd~G~VANfVETEqIv~~~~~~~~~~~~~SfvQiRGSVPlfW~Q~~-~l~~kP~i~i~--~~~~~a~~kHF~~L~~~Y 297 (505)
T 3lwt_X 221 GVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEIN-NLKYKPNLVLG--ENSLDATKKHFDQQKELY 297 (505)
T ss_dssp SBCTTSCCSCEEEEEEEEEEECTTTCCEEEEEEEEEEECCCSBSCCCC-CSSSCCCCCCC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEECC-CCCCCCCEEEC--CCHHHHHHHHHHHHHHHH
T ss_conf 869898743135478999968877787427999971146673046247-75768970656--744899999999999973
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99579996555656786231799999999999640388579727993430044420-21019999997999874003516
Q 002467 371 GNPIIVLNLIKTVEKRPREMMLRREFANAVGYLNTILSEENQVRFIHWDFHKFAKS-KSANVLAVLGGVASEALDLTGFY 449 (919)
Q Consensus 371 G~pIiiVNLLk~~Ekk~~E~~L~~~F~~aI~~ln~~lp~e~~I~Yi~FDfHk~~K~-k~~nvl~~L~~ia~~~l~~~gff 449 (919)
|. ++|||||++ |++|..|+++|+++|+++|+ ..|+|++||||++||+ +..++..++..+++..++..|||
T Consensus 298 G~-~~iVNLl~~---k~~E~~L~~~y~~~v~~l~~-----~~i~y~~fDfh~~~k~~~~~~v~~ll~~l~~~~~~~~g~f 368 (505)
T 3lwt_X 298 GD-NYLVNLVNQ---KGHELPVKEGYESVVHALND-----PKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFF 368 (505)
T ss_dssp SE-EEEEEECCC---SSCCCHHHHHHHHHHHHHCC-----TTEEEEEECCCSSTTTHHHHHHHHHHHHHHHHTCCTTCSE
T ss_pred CC-CEEEECCCC---CCCHHHHHHHHHHHHHHHCC-----CCCCEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99-479853467---77415788999999997465-----6871599601085623436679999999998415026715
Q ss_pred EECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCCCHHHH
Q ss_conf 62677412122200000001248754456677777777875554000013478999999861002399730683211345
Q 002467 450 YSGKSCITKKRTSQLRDLRASSGDLARVGSCNESLNSVGSRERDADFYQQSKTNSPDGAAPCFQSGVLRTNCIDCLDRTN 529 (919)
Q Consensus 450 ~~~~~~~~k~~~~~l~~lr~~s~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~~Q~GViRTNCiDCLDRTN 529 (919)
+...... + ...++...|+||+||||||||||||
T Consensus 369 ~~~~~~~----------------------------------------------g-~~~~~~~~Q~GV~RtNCiDCLDRTN 401 (505)
T 3lwt_X 369 HKVIDSN----------------------------------------------G-NTVEIVNEQHSVVRTNCMDCLDRTN 401 (505)
T ss_dssp EEEECTT----------------------------------------------S-CEEEEEECCCEEEEEETTSCHHHHH
T ss_pred EEECCCC----------------------------------------------C-CCCCEEECCCEEEEEECCCCCCCCH
T ss_conf 7632678----------------------------------------------8-7562355244089973142102631
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9999999999999999849988999-899916999999999997659787514965456565300255321002277999
Q 002467 530 VAQYAYGLAALGRQLHAMGLTDMPK-VNPNSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFPERQGKWKATTQSREFLK 608 (919)
Q Consensus 530 VvQ~~ig~~aL~~QL~~LGi~~~~~-i~~ds~l~~~l~~lw~dnGD~IS~qYaGT~Alkt~ft~R~Gk~t~~g~s~D~~~ 608 (919)
|||+++|+.+|++||+.+|+...+. ++.++++...|++||++|||+||+|||||+|+|++|| |+|||+.+|+++|+++
T Consensus 402 vvQ~~i~~~~L~~qL~~lgi~~~~~~~~~~~~~~~~f~~lWadnGD~iS~qYaGT~Alkt~~t-R~gk~~~~g~l~D~~~ 480 (505)
T 3lwt_X 402 VVQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTDFT-RTGKRTRLGAFNDFLN 480 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTCCGGGCHHHHHHHHHHHHHHHHHHTTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-ECEEECHHHHHHHHHH
T ss_conf 999999999999999981898886422368789999999999855899987569701367605-3406404315788988
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 8999875127863356699866157
Q 002467 609 SIKRYYSNAYTDGEKQDAINLFLGY 633 (919)
Q Consensus 609 Si~RYY~NnF~D~~KQdaIdLfLG~ 633 (919)
|++|||+|||.|+.||+|||||||+
T Consensus 481 S~~Ryy~NnF~D~~rQ~aidl~LGn 505 (505)
T 3lwt_X 481 SASRYYQNNWTDGPRQDSYDLFLGG 505 (505)
T ss_dssp -------------------------
T ss_pred HHHHEEECCCCCHHHHHHHHHHCCC
T ss_conf 6742023044758887889987489
No 2
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=1.00 E-value=1 Score=14.02 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=61.4
Q ss_pred ECEEEEEECCCCCHH-----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHCCCC
Q ss_conf 023997306832113-----459999999999999999849988999899916999999---999997659787514965
Q 002467 513 QSGVLRTNCIDCLDR-----TNVAQYAYGLAALGRQLHAMGLTDMPKVNPNSSIAAALM---DMYQSMGDALAQQYGGSA 584 (919)
Q Consensus 513 Q~GViRTNCiDCLDR-----TNVvQ~~ig~~aL~~QL~~LGi~~~~~i~~ds~l~~~l~---~lw~dnGD~IS~qYaGT~ 584 (919)
+.|.+ |+|-|.. .++-+-.++...| |. ...|....+..++..++ +.|....-.....||+..
T Consensus 88 ~~G~i---Cl~iL~~~W~p~~~i~~vL~~i~~l---l~----~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~ 157 (201)
T 3k9o_A 88 VTGAI---CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 157 (201)
T ss_dssp TTCBB---CCGGGTTTCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEE---ECCCCCCCCCCCCCHHHHHHHHHHH---HC----CCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 89915---6731246788877799999999998---42----99999720499999998799999999999999834466
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 4565653002553210022779998999875127863356699866157
Q 002467 585 AHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGY 633 (919)
Q Consensus 585 Alkt~ft~R~Gk~t~~g~s~D~~~Si~RYY~NnF~D~~KQdaIdLfLG~ 633 (919)
+....+-.+..+...+|..++-...+-+.. +++-..|++.++++
T Consensus 158 ~~~~~~eekV~~l~~MGf~~~~a~~AL~~~-----~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMGFDRNAVIVALSSK-----SWDVETATELLLSN 201 (201)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHHHT-----TTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-----CCCHHHHHHHHHCC
T ss_conf 666026889999998199899999999982-----99889999998539
No 3
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=1.00 E-value=1 Score=13.75 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=58.6
Q ss_pred ECEEEEEECCCCCHH-----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHCCCC
Q ss_conf 023997306832113-----459999999999999999849988999899916999999---999997659787514965
Q 002467 513 QSGVLRTNCIDCLDR-----TNVAQYAYGLAALGRQLHAMGLTDMPKVNPNSSIAAALM---DMYQSMGDALAQQYGGSA 584 (919)
Q Consensus 513 Q~GViRTNCiDCLDR-----TNVvQ~~ig~~aL~~QL~~LGi~~~~~i~~ds~l~~~l~---~lw~dnGD~IS~qYaGT~ 584 (919)
+.|.+ |+|-|.. .++-+-.++...| |. ...|.-..+..++..++ +.|....-.....||+..
T Consensus 140 ~~G~I---CL~iL~~~WsP~~ti~~vL~sI~~l---l~----~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~ 209 (253)
T 3e46_A 140 VTGAI---CLDILKDQWAAAMTLRTVLLSLQAL---LA----AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 209 (253)
T ss_dssp TTCBB---CCGGGTTCCCTTCCHHHHHHHHHHH---HH----SCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCS
T ss_pred CCCEE---ECCCCCCCCCCCCCHHHHHHHHHHH---HC----CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 89935---5621257889877899999999999---46----99988714399999998899999999999999865556
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 4565653002553210022779998999875127863356699866157
Q 002467 585 AHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGY 633 (919)
Q Consensus 585 Alkt~ft~R~Gk~t~~g~s~D~~~Si~RYY~NnF~D~~KQdaIdLfLG~ 633 (919)
.....|..+..+...+|..++..+.+-+.. +++...|++.++|+
T Consensus 210 ~~~~~~~~~v~~l~~mgf~~~~~~~al~~~-----nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAGFDRNAVIVALSSK-----SWDVETATELLLSN 253 (253)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHHHT-----TTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-----CCCHHHHHHHHHCC
T ss_conf 676047899999998098789999999873-----88788999998439
No 4
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A
Probab=1.00 E-value=1 Score=13.24 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 06899999999998729957999655
Q 002467 355 TYQATKMHFEDLAKRYGNPIIVLNLI 380 (919)
Q Consensus 355 ~~~a~~kHF~~L~~rYG~pIiiVNLL 380 (919)
...+...|...+..||+..|.....+
T Consensus 104 ~~~~~~~~i~~v~~ry~g~v~~WdV~ 129 (303)
T 1i1w_A 104 LTNVMKNHITTLMTRYKGKIRAWDVV 129 (303)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999999999999667930599701
No 5
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=12.70 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 39973068321134599999999999999998499
Q 002467 515 GVLRTNCIDCLDRTNVAQYAYGLAALGRQLHAMGL 549 (919)
Q Consensus 515 GViRTNCiDCLDRTNVvQ~~ig~~aL~~QL~~LGi 549 (919)
|+....-.|-.++.|..|-..++.+|...++.+|+
T Consensus 92 g~~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~ 126 (126)
T 2l3g_A 92 RLETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL 126 (126)
T ss_dssp CCCCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 97765888998179888999999999999988469
No 6
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP: b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Probab=1.00 E-value=1 Score=12.23 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 35669986615766
Q 002467 622 EKQDAINLFLGYFQ 635 (919)
Q Consensus 622 ~KQdaIdLfLG~~~ 635 (919)
.+|+.|+||.|++.
T Consensus 21 ~~q~~i~lfignw~ 34 (111)
T 1nyc_A 21 LEQTNINLFIGNWS 34 (111)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred CCCCEEEEEEECCC
T ss_conf 13442899970557
No 7
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=1.00 E-value=1 Score=12.05 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 97527211347447888987526764789606899999999998729957999655
Q 002467 325 QMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLI 380 (919)
Q Consensus 325 QiRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rYG~pIiiVNLL 380 (919)
.+||-.+++-+|.+ .+...+ ...+....+...|...+..||+..|..-..+
T Consensus 78 ~v~ghtlvW~~q~P-~W~~~~----~~~~~~~~~~~~~i~~v~~rY~g~v~~Wdv~ 128 (303)
T 1ta3_B 78 KVRGHTLVWHSQLP-SWVSSI----GDANTLRSVMTNHINEVVGRYKGKIMHWDVV 128 (303)
T ss_dssp EEEEEEEECSSSCC-HHHHTC----CCHHHHHHHHHHHHHHHHHHTTTSCSEEEEE
T ss_pred EEEEEECCCCCCCC-HHHHCC----CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 79886343667797-465269----9989999999999999999668952499811
No 8
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=1.00 E-value=1 Score=11.96 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2317999999999996
Q 002467 388 REMMLRREFANAVGYL 403 (919)
Q Consensus 388 ~E~~L~~~F~~aI~~l 403 (919)
.-+-|-++|.++++..
T Consensus 100 G~ggLvraY~~~a~~a 115 (191)
T 2cve_A 100 GAGGLVRAYGGVAAEA 115 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8654899999999999
No 9
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=1.00 E-value=1 Score=11.92 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred EEEECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9975272113474478889875267647896068999999999987299579996555
Q 002467 324 VQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLIK 381 (919)
Q Consensus 324 VQiRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rYG~pIiiVNLLk 381 (919)
+.+||-.++ |....+.+.... ..+....+...|...+..||+..|.....++
T Consensus 76 i~v~ghtlv-W~~q~P~W~~~~-----~~~~~~~~~~~~i~~v~~ry~g~i~~wdv~N 127 (313)
T 1v0l_A 76 KQVRGHTLA-WHSQQPGWMQSL-----SGSALRQAMIDHINGVMAHYKGKIVQWDVVN 127 (313)
T ss_dssp CEEEEEEEE-CSSSCCHHHHTC-----CHHHHHHHHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CEEEEEEEC-CCCCCCHHHHCC-----CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 989998633-767696244339-----9999999999999999997399434996005
No 10
>2lyd_B Pacman protein; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=11.75 Aligned_cols=7 Identities=86% Similarity=1.868 Sum_probs=0.0
Q ss_pred CEEEEEC
Q ss_conf 1134744
Q 002467 331 PLFWSQE 337 (919)
Q Consensus 331 PLfWsQ~ 337 (919)
||||.++
T Consensus 25 plfwq~e 31 (38)
T 2lyd_B 25 PLFWQQE 31 (38)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
T ss_conf 5278888
Done!