Query 002467
Match_columns 919
No_of_seqs 249 out of 847
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 16:53:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002467.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1187-1191//hhsearch_scop/002467hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyca_ b.61.2.2 (A:) Staphost 5.7 60 0.0044 8.0 0.4 14 622-635 21-34 (111)
2 d1n82a_ c.1.8.3 (A:) Xylanase 5.3 66 0.0048 7.7 1.3 27 354-380 105-131 (330)
3 d1fh9a_ c.1.8.3 (A:) Xylanase 4.9 73 0.0053 7.4 0.3 50 326-381 77-126 (312)
4 d1va4a_ c.69.1.12 (A:) Arylest 4.8 75 0.0055 7.3 3.8 57 321-382 1-57 (271)
5 d1ta3b_ c.1.8.3 (B:) Xylanase 4.7 76 0.0055 7.3 2.9 25 355-379 101-128 (301)
6 d1dp7p_ a.4.5.20 (P:) Class II 4.6 77 0.0056 7.2 1.2 18 824-841 18-35 (76)
7 d1vi7a1 d.14.1.11 (A:3-137) Hy 4.1 90 0.0066 6.8 0.4 11 159-169 16-26 (135)
8 d2ogka1 d.77.1.2 (A:4-144) Hyp 4.1 91 0.0066 6.8 0.7 58 370-427 44-106 (141)
9 d1ur1a_ c.1.8.3 (A:) Xylanase 4.0 93 0.0068 6.7 4.3 123 324-448 74-203 (350)
10 d1iyjb1 a.170.1.1 (B:2403-2598 3.9 94 0.0069 6.7 1.9 29 815-843 112-140 (196)
No 1
>d1nyca_ b.61.2.2 (A:) Staphostatin B (SspC) {Staphylococcus aureus [TaxId: 1280]}
Probab=5.68 E-value=60 Score=7.97 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 35669986615766
Q 002467 622 EKQDAINLFLGYFQ 635 (919)
Q Consensus 622 ~KQdaIdLfLG~~~ 635 (919)
.+|+.|+||.|++.
T Consensus 21 ~~q~~i~lfignw~ 34 (111)
T d1nyca_ 21 LEQTNINLFIGNWS 34 (111)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred CCCCEEEEEEECCC
T ss_conf 13442899970557
No 2
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]}
Probab=5.28 E-value=66 Score=7.71 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 606899999999998729957999655
Q 002467 354 PTYQATKMHFEDLAKRYGNPIIVLNLI 380 (919)
Q Consensus 354 ~~~~a~~kHF~~L~~rYG~pIiiVNLL 380 (919)
+-..++..|...+.+||+..|..-+.+
T Consensus 105 ~~~~~~~~~i~~v~~ry~g~v~~WdV~ 131 (330)
T d1n82a_ 105 VLLERMKCHISTVVRRYKGKIYCWDVI 131 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 999999999999999649975068886
No 3
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]}
Probab=4.85 E-value=73 Score=7.41 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=28.5
Q ss_pred EECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 75272113474478889875267647896068999999999987299579996555
Q 002467 326 MRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLIK 381 (919)
Q Consensus 326 iRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rYG~pIiiVNLLk 381 (919)
+||-+|++++|.+ ..... . ..+....+...|+..+..||+..|..-+.++
T Consensus 77 v~gh~lvw~~~~p-~~~~~----~-~~~~~~~~~~~~i~~v~~ry~g~i~~WdV~N 126 (312)
T d1fh9a_ 77 LYGHTLVWHSQLP-DWAKN----L-NGSAFESAMVNHVTKVADHFEGKVASWDVVN 126 (312)
T ss_dssp EEEEEEEESSSCC-HHHHT----C-CHHHHHHHHHHHHHHHHHHTTTTCCEEEEEE
T ss_pred EEEECCCCCCCCC-CCCCC----C-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9972356530012-32222----2-4599999999999999985699751789865
No 4
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=4.76 E-value=75 Score=7.34 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=34.2
Q ss_pred EEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999752721134744788898752676478960689999999999872995799965556
Q 002467 321 SSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLIKT 382 (919)
Q Consensus 321 sSfVQiRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rYG~pIiiVNLLk~ 382 (919)
+|||...| +.|+|...+. .+|-+.+.....+...+..-.+.|.++ |-.|+++++-..
T Consensus 1 s~f~~~dG-~~l~y~~~G~---g~~vv~lHG~~~~~~~~~~~~~~l~~~-g~~vi~~D~~G~ 57 (271)
T d1va4a_ 1 STFVAKDG-TQIYFKDWGS---GKPVLFSHGWLLDADMWEYQMEYLSSR-GYRTIAFDRRGF 57 (271)
T ss_dssp CEEECTTS-CEEEEEEESS---SSEEEEECCTTCCGGGGHHHHHHHHTT-TCEEEEECCTTS
T ss_pred CEEEEECC-EEEEEEEECC---CCEEEEECCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf 97996799-5999999868---986999899998878999999999868-998999856432
No 5
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]}
Probab=4.71 E-value=76 Score=7.30 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHCCCEE---EEEC
Q ss_conf 068999999999987299579---9965
Q 002467 355 TYQATKMHFEDLAKRYGNPII---VLNL 379 (919)
Q Consensus 355 ~~~a~~kHF~~L~~rYG~pIi---iVNL 379 (919)
....+..|+..+..||+..|. |+|=
T Consensus 101 ~~~~~~~~I~~v~~rY~g~i~~WDVvNE 128 (301)
T d1ta3b_ 101 LRSVMTNHINEVVGRYKGKIMHWDVVNE 128 (301)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 9999999999998745897633775334
No 6
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.64 E-value=77 Score=7.25 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHCCCCCC
Q ss_conf 554887989985169888
Q 002467 824 ENSEIYKHYAELCQGPAM 841 (919)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~ 841 (919)
.-+|+|.||++.|+---+
T Consensus 18 pR~~lY~~Y~~~C~~~~~ 35 (76)
T d1dp7p_ 18 PRSTLYNHYLLHSQEQKL 35 (76)
T ss_dssp EHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 479999999999998198
No 7
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=90 Score=6.81 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.8
Q ss_pred EEEEEEEEEEC
Q ss_conf 99731246861
Q 002467 159 YSIDESQLITI 169 (919)
Q Consensus 159 Y~I~~t~~Ipi 169 (919)
+.|.++.||..
T Consensus 16 ~eikkSkFia~ 26 (135)
T d1vi7a1 16 EEIKKSRFITM 26 (135)
T ss_dssp EEETTEEEEEE
T ss_pred EEEECCEEEEE
T ss_conf 99758899999
No 8
>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.07 E-value=91 Score=6.79 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=0.0
Q ss_pred HCCCEEEE--ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCEEEEECCHHHHHHCC
Q ss_conf 29957999--65556567862317999999999996403885---797279934300444202
Q 002467 370 YGNPIIVL--NLIKTVEKRPREMMLRREFANAVGYLNTILSE---ENQVRFIHWDFHKFAKSK 427 (919)
Q Consensus 370 YG~pIiiV--NLLk~~Ekk~~E~~L~~~F~~aI~~ln~~lp~---e~~I~Yi~FDfHk~~K~k 427 (919)
||+||+++ .|-+.+.-+..-..|.+-+..-+..+...+++ +++.-|+.||..+.+.++
T Consensus 44 ~GnpI~il~~~l~kk~~~~~~l~~l~~l~~~~~~~ll~~l~~RiDe~~~l~lRldKQ~a~~G~ 106 (141)
T d2ogka1 44 YGNPMEYLEVELTKSSEIKKFWKNLLELLGEQAEEILSTLEDRIDEQNVLHIRIDKQKAYLGE 106 (141)
T ss_dssp ----CEEEEEEECSHHHHHHHHHHHHHHHGGGHHHHHHHHHHHBCTTCEEEEEECHHHHHTTC
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHCCC
T ss_conf 799479999998153779999999987464779999987675066796599998579984797
No 9
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Probab=4.00 E-value=93 Score=6.73 Aligned_cols=123 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred EEEECCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC-------CCCCHHHHHHHHH
Q ss_conf 997527211347447888987526764789606899999999998729957999655565-------6786231799999
Q 002467 324 VQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKMHFEDLAKRYGNPIIVLNLIKTV-------EKRPREMMLRREF 396 (919)
Q Consensus 324 VQiRGSIPLfWsQ~~~~l~~KP~I~i~~~d~~~~a~~kHF~~L~~rYG~pIiiVNLLk~~-------Ekk~~E~~L~~~F 396 (919)
+.+||=..++-+|.+.-+..++.-.-...+........|+..+..||+..|..-+.++.. ........++..|
T Consensus 74 i~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~l~~~~~~~I~~v~~ry~g~i~~WDVvNE~~~~~~~~~~~~~~~~~G~~~ 153 (350)
T d1ur1a_ 74 LHMVGHTLVWHSQIHDEVFKNADGSYISKAALQKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDF 153 (350)
T ss_dssp CEEEEEEEECSSSSCGGGTBCTTSCBCCHHHHHHHHHHHHHHHHHHTTTTCSEEEEEECCBCTTSSBCCCHHHHHHTTHH
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCHH
T ss_conf 97988888874655663113677665688999999999999999745886328998425426888855331342008389
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999996403885797279934300444202101999999799987400351
Q 002467 397 ANAVGYLNTILSEENQVRFIHWDFHKFAKSKSANVLAVLGGVASEALDLTGF 448 (919)
Q Consensus 397 ~~aI~~ln~~lp~e~~I~Yi~FDfHk~~K~k~~nvl~~L~~ia~~~l~~~gf 448 (919)
....-.+.+...++.+|-|- |+.-+..+|....+.++..+........|.
T Consensus 154 i~~af~~Ar~~dP~akL~~N--dyn~~~~~k~~~~~~lv~~l~~~GvpiDgI 203 (350)
T d1ur1a_ 154 IYNAFTLANEVDPKAHLMYN--DYNIERTGKREATVEMIERLQKRGMPIHGL 203 (350)
T ss_dssp HHHHHHHHHHHCTTSEEEEE--ESSTTSTTHHHHHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHCCCCEEEEC--CCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999863988668643--566534444277999999999689971189
No 10
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.94 E-value=94 Score=6.67 Aligned_cols=29 Identities=31% Similarity=0.691 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 23125777755488798998516988899
Q 002467 815 GGTLLGDQDENSEIYKHYAELCQGPAMEP 843 (919)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (919)
||.|+++.+-..+.-..|..+|..|-.+|
T Consensus 112 gg~li~~~~g~~G~eEf~~a~l~~pGvdp 140 (196)
T d1iyjb1 112 GGWLIPSDDGKAGKEEFYRALCDTPGVDP 140 (196)
T ss_dssp GEEECCCTTSCBCHHHHHHHHHTSTTCCG
T ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCH
T ss_conf 77574667776457999999844899882
Done!