BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002468
(918 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 235/477 (49%), Gaps = 32/477 (6%)
Query: 95 RLLVVANRLP------------VSAIRRGVKEFEARWIGWAGVNVPDEIGQKALTKALAE 142
RL+VV+NR+ I +K W GW+G ++ K + K
Sbjct: 3 RLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKG--N 60
Query: 143 KRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMF 202
L E + +YYN + N +LWP FHY RL + + + Y++ N +
Sbjct: 61 ITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDGYLRVNALL 113
Query: 203 ADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXX 262
AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI LP
Sbjct: 114 ADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTL 173
Query: 263 XXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSE 319
GF T + F+ S TR+ G+ R +PIGI+ +
Sbjct: 174 LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEVYPIGIEPK 231
Query: 320 RFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGK 379
+ P+ + +L+ + + V+RLD KG+P++ LA+E LE+ GK
Sbjct: 232 EIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGK 290
Query: 380 VVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 439
+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D L ++
Sbjct: 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFR 350
Query: 440 VTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILVNPWNITEV 498
+DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++VNP++ EV
Sbjct: 351 YSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNPYDRDEV 409
Query: 499 ANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEAQLRIK 552
A A+ RAL MS ER RH + + W E F+S+L V E+Q R K
Sbjct: 410 AAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQRDK 466
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 235/477 (49%), Gaps = 32/477 (6%)
Query: 95 RLLVVANRLP------------VSAIRRGVKEFEARWIGWAGVNVPDEIGQKALTKALAE 142
RL+VV+NR+ I +K W GW+G ++ K + K
Sbjct: 3 RLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKG--N 60
Query: 143 KRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMF 202
L E + +YYN + N +LWP FHY RL + + + Y++ N +
Sbjct: 61 ITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDGYLRVNALL 113
Query: 203 ADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXX 262
AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI LP
Sbjct: 114 ADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTL 173
Query: 263 XXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSE 319
GF T + F+ S TR+ G+ R +PIGI+ +
Sbjct: 174 LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEVYPIGIEPK 231
Query: 320 RFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGK 379
+ P+ + +L+ + + V+RLD KG+P++ LA+E LE+ GK
Sbjct: 232 EIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGK 290
Query: 380 VVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 439
+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D L ++
Sbjct: 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFR 350
Query: 440 VTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILVNPWNITEV 498
+DV LVT LRDGMNLV+ E+VA QD GVL+LS+FAGAA L A++VNP++ EV
Sbjct: 351 YSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNPYDRDEV 409
Query: 499 ANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV---VEAQLRIK 552
A A+ RAL MS ER RH + + W E F+S+L V E+Q R K
Sbjct: 410 AAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQRDK 466
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/466 (32%), Positives = 228/466 (48%), Gaps = 29/466 (6%)
Query: 95 RLLVVANRLP------------VSAIRRGVKEFEARWIGWAGVNVPDEIGQKALTKALAE 142
RL+VV+NR+ I +K W GW+G ++ K + K
Sbjct: 2 RLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKG--N 59
Query: 143 KRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMF 202
L E + +YYN + N +LWP FHY RL + + + Y++ N +
Sbjct: 60 ITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDGYLRVNALL 112
Query: 203 ADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXX 262
AD + +D D++W HDYHL+ L++ + ++G+FLH PFP+ EI LP
Sbjct: 113 ADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTL 172
Query: 263 XXXXXXXXXXGFHTYDYARHFV---SACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSE 319
GF T + F+ S TR+ G+ R +PIGI+ +
Sbjct: 173 LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTA--WGKAFRTEVYPIGIEPK 230
Query: 320 RFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGK 379
+ P+ + +L+ + + V+RLD KG+P++ LA+E LE+ GK
Sbjct: 231 EIAKQ-AAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGK 289
Query: 380 VVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 439
+ QIA +R DV YQ + Q+ GRING++G L P+++L++ D L ++
Sbjct: 290 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFR 349
Query: 440 VTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFAGAAQSLGAGAILVNPWNITEV 498
+DV LVT LRDG NLV+ E+VA QD GVL+LS+FAGAA L A++VNP++ EV
Sbjct: 350 YSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNPYDRDEV 408
Query: 499 ANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTV 544
A A+ RAL S ER RH + + W E F+S+L V
Sbjct: 409 AAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQIV 454
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 22/355 (6%)
Query: 151 DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKH- 209
D + N N++W +Y G + + + + +A + + + FAD + K
Sbjct: 87 DPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSS 145
Query: 210 YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXXXXXX 268
+ D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 146 AQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM 205
Query: 269 --XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSERFIR 323
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 206 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP----- 260
Query: 324 ALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVL 382
L ++ + E E +A G ++++ R D IK + + AF L K +
Sbjct: 261 -LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRM 317
Query: 383 LQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 442
L P R VP +V V N G+ T +D D A + D
Sbjct: 318 LVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFRRAD 373
Query: 443 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 497
+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 374 LLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 427
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 22/355 (6%)
Query: 151 DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYIKANQMFADVVNKH- 209
D + N N++W +Y G + + + + +A + + + FAD + K
Sbjct: 88 DPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSS 146
Query: 210 YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPXXXXXXXXXXX 268
+ D V+ HDY L+ +P L+E D + F+H P+PS++ R LP
Sbjct: 147 AQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGM 206
Query: 269 --XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQGRLTRVAAFPIGIDSERFIR 323
GF + R+F+ + +L + VE +G TR+ P+G
Sbjct: 207 LPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP----- 261
Query: 324 ALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVL 382
L ++ + E E +A G ++++ R D IK + + AF L K +
Sbjct: 262 -LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRM 318
Query: 383 LQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTD 442
L P R VP +V V N G+ T +D D A + D
Sbjct: 319 LVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFRRAD 374
Query: 443 VALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITE 497
+ + S DG NL ++E + + +ILSE GAA+ LG VNP+++ E
Sbjct: 375 LLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 151/374 (40%), Gaps = 25/374 (6%)
Query: 135 ALTKALAEKRCIPVFL---DEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQ 191
+T L R I V L D + N N+ W +Y G + + + +
Sbjct: 69 GVTXELHSGREILVRLIRHDPAVFRNVQNFXTANLXWAANNY-GWDRWTQPSFGSDAREG 127
Query: 192 FAAYIKANQMFADVVNKH-YKDGDVVW-CHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPS 249
+A + + + FAD + K + D V+ HDY L+ +P L+E D + F+H P+PS
Sbjct: 128 WADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPS 187
Query: 250 SEIHRTLPXXXXXXXXXXX--XXXXGFHTYDYARHFVSACTRILG---FEGTPEGVEDQG 304
++ R LP GF + R+F+ + +L + VE +G
Sbjct: 188 ADYWRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLPDARIDREAXTVEWRG 247
Query: 305 RLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFA-GRKVMLGVDRLDMIKGIPQKL 363
TR+ P+G L ++ + E E +A G ++++ R D IK + +
Sbjct: 248 HRTRLRTXPLGYSP------LTLDGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAV 301
Query: 364 LAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIH 423
AF L K L P R VP +V V N G+ T
Sbjct: 302 RAF--VLAARGGGLEKTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTV---- 355
Query: 424 HLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL 483
+D D A + D+ + S DG NL ++E + + +ILSE GAA+ L
Sbjct: 356 RIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNE-RDADVILSETCGAAEVL 414
Query: 484 GAGAILVNPWNITE 497
G VNP+++ E
Sbjct: 415 GEYCRSVNPFDLVE 428
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 703 YKYADVEFGRIQARDMLQHLWTGPISNASVEVVQGSKSVEVRAVGVTKGAAIDRILAEIV 762
YKY D EF I A+D H V +V GSK V D I+ + +
Sbjct: 186 YKYFDKEFTDILAKDYEAH---------GVNLVLGSKVAAFEEVD-------DEIITKTL 229
Query: 763 HSKKMKTAIDYVLCIG 778
K++K+ I +LCIG
Sbjct: 230 DGKEIKSDI-AILCIG 244
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 25 KIERDLRKSSRASHPNDVTDNGGREVFEDEQRLR----DGDNLGPSIVDEDLEGPASTPN 80
K ERD R + P VT + +EVFED +R DG + G + ++ E A
Sbjct: 88 KKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTF 147
Query: 81 E---GCERLDGRTFS 92
E G E +DGR+ S
Sbjct: 148 EEKQGTE-IDGRSIS 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,591,198
Number of Sequences: 62578
Number of extensions: 1173056
Number of successful extensions: 2510
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2492
Number of HSP's gapped (non-prelim): 13
length of query: 918
length of database: 14,973,337
effective HSP length: 108
effective length of query: 810
effective length of database: 8,214,913
effective search space: 6654079530
effective search space used: 6654079530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)