Query 002468
Match_columns 918
No_of_seqs 416 out of 3342
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 17:08:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002468.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1187-1191//hhsearch_pdb/002468hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5t_A Putative glycosyltransf 1.0 1 1 814.0 49.3 436 93-546 2-476 (496)
2 1uqt_A Alpha, alpha-trehalose- 1.0 1 1 730.6 45.2 437 94-543 2-454 (482)
3 3s28_A Sucrose synthase 1; gly 1.0 1 1 225.1 23.6 312 211-543 406-769 (816)
4 3fro_A GLGA glycogen synthase; 1.0 1 1 224.2 34.6 314 192-545 99-432 (439)
5 3vue_A GBSS-I, granule-bound s 1.0 1 1 222.3 30.0 297 211-543 152-511 (536)
6 2r60_A Glycosyl transferase, g 1.0 1 1 217.2 26.8 304 211-546 119-462 (499)
7 3c48_A Predicted glycosyltrans 1.0 1 1 209.6 29.7 297 210-546 120-428 (438)
8 2qzs_A Glycogen synthase; glyc 1.0 1 1 208.8 33.6 301 211-545 128-478 (485)
9 1u02_A Trehalose-6-phosphate p 1.0 1 1 208.3 21.8 225 572-908 1-229 (239)
10 1rzu_A Glycogen synthase 1; gl 1.0 1 1 207.7 31.7 301 211-545 129-477 (485)
No 1
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=1.00 E-value=1 Score=814.02 Aligned_cols=436 Identities=23% Similarity=0.325 Sum_probs=386.6
Q ss_pred CCCEEEEECCCCCCCCCC---------------C-----CC-CCCCEEEEECCCCCCCCHHHHHHHH----------HHC
Q ss_conf 971999986676432004---------------6-----43-4790899848999999022689998----------523
Q 002468 93 RQRLLVVANRLPVSAIRR---------------G-----VK-EFEARWIGWAGVNVPDEIGQKALTK----------ALA 141 (918)
Q Consensus 93 ~~~livvsnrlP~~~~~~---------------~-----l~-~~~~~Wvgw~g~~~~~~~~~~~~~~----------~l~ 141 (918)
.++|||||||||+.++++ | |. -.+++||||+|...+ .....+ ...
T Consensus 2 ~~~livvsnR~P~~~~~~~~~g~~~~~~~~~s~GGLv~al~~~~~~~Wvgw~~~~~~----~~~~~~~~~~~~~~~~~~~ 77 (496)
T 3t5t_A 2 GSEIFLASKRAAITYDTDPATGEPRAWLAPGGTGNVVAEQAGVLNISWIASADSEDD----RRASALNPDGVTMELHSGR 77 (496)
T ss_dssp --CEEEEESCCCEEEEECTTTCSEEEEECSSHHHHHHHHHHHHHTCCEEEECCSHHH----HHHHHHCTTCEEEECTTSC
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCCCC----HHHHHCCCCCCCCCCCCCC
T ss_conf 987899987887068881689956311331699962998762239789941788642----1233304554455545678
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHC--CCCCEEEE
Q ss_conf 950999853847687767877787667430189998421011131128-999999999999999998635--99988999
Q 002468 142 EKRCIPVFLDEDIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQ-SQFAAYIKANQMFADVVNKHY--KDGDVVWC 218 (918)
Q Consensus 142 ~~~~~pV~l~~~~~~~~y~~f~~~~LWp~~H~~~~~~~~~~~~~~~~~-~~w~~Y~~vN~~fA~~i~~~~--~~~DiVwi 218 (918)
+++|+||+|+++++++||+||||++|||+|||+++.+.. ... ..|+ ++|++|++||+.||+++.+.+ +++|+|||
T Consensus 78 ~~~~~~v~l~~~~~~~~Y~gf~n~~LWPl~H~~~~~~~~-p~~-~~~~~~~w~~Y~~vN~~fA~~i~~~~~~~~~D~VwV 155 (496)
T 3t5t_A 78 EILVRLIRHDPAVFRNVQNFMTANLMWAANNYGWDRWTQ-PSF-GSDAREGWADFGRFTRDFADAILKSSAQSADPVYLV 155 (496)
T ss_dssp EEEEEEECCCHHHHHHHHHHHSTTTHHHHHTTCCCSSSC-CCB-CHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCEEEE
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCHHHCCCCCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 757999968999999998774750144012254336778-762-111399999999999999999999744689998999
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCC--CHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHH-CCCC
Q ss_conf 377521279999961899819999827999745550299--8079999988387886718999999999999883-6546
Q 002468 219 HDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLP--SRSDLLRAVLAADLVGFHTYDYARHFVSACTRIL-GFEG 295 (918)
Q Consensus 219 hDyhl~llp~~lr~~~~~~~I~~flH~PfPs~e~fr~lP--~r~~ll~~ll~aDlIgF~t~~~~~~Fl~~~~r~l-g~~~ 295 (918)
||||||++|++||++.|+++||||+|||||++|+|++|| ||++|++|||+||+||||+++|++||++||++++ +++.
T Consensus 156 hDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~ 235 (496)
T 3t5t_A 156 HDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARI 235 (496)
T ss_dssp ESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEE
T ss_pred ECCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf 47507678999996589983999984899998999657676799999999869999996489999999999998267742
Q ss_pred --CCCCEEECCEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf --899333179155899950776924330330498149999999998369808999705444589789999999978868
Q 002468 296 --TPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEEN 373 (918)
Q Consensus 296 --~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~ 373 (918)
...+++++|+.++|.++|+|||++.|.+... ++. ++++++++++++|++|||||+.||+..+|+|| +|++++
T Consensus 236 ~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~--~~~---~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~ 309 (496)
T 3t5t_A 236 DREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNP--QLP---EGIEEWADGHRLVVHSGRTDPIKNAERAVRAF-VLAARG 309 (496)
T ss_dssp ETTTTEEEETTEEEEEEECCCCBCGGGC----C--CCC---TTHHHHHTTSEEEEEEEESSGGGCHHHHHHHH-HHHHHT
T ss_pred CCCCCEEEECCEEEEEEEECCEECHHHHCHHHH--HHH---HHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH-HHHHHC
T ss_conf 456876998998889998163757899430149--999---99999828963999836676115979999999-998749
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCC
Q ss_conf 47558578999974999992779999999999998640346987844399957989988999999875689978997668
Q 002468 374 SDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGM 453 (918)
Q Consensus 374 P~~~~kv~Lvqi~~psr~~~~~y~~l~~~i~~lv~~IN~~~g~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~ 453 (918)
|+++ +++|+|||.|+++++++|++++.++++++++||++||+. ||+|+ +.+++++++++|++|||||+||++|||
T Consensus 310 P~~~-~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~---~V~f~-g~v~~~el~aly~~ADv~vv~SlrEGf 384 (496)
T 3t5t_A 310 GGLE-KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD---TVRID-NDNDVNHTIACFRRADLLIFNSTVDGQ 384 (496)
T ss_dssp SSCT-TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT---SEEEE-ECCCHHHHHHHHHHCSEEEECCSSBSC
T ss_pred CCCC-EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC---CEEEE-CCCCHHHHHHHHHHCCEEEECCCCCCC
T ss_conf 6553-389999977777874679999999999999846436886---78994-889999999999856599989551458
Q ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 82699998704899843999298780121048739999999999999999995399999999999897899862899999
Q 002468 454 NLVSYEFVACQDLKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWA 533 (918)
Q Consensus 454 nLvalEamA~~~~~~g~lIlSe~aG~~e~lg~~allVnP~D~~~lA~ai~~aL~m~~~er~~r~~~~~~~V~~~~~~~W~ 533 (918)
|||++|||||+ .++||+|+|+++|++++|+.+|++|||+|++++|++|.++|+|+.+||++|+++++++|.+||++.|+
T Consensus 385 gLv~~EamA~~-~~~g~lVlSe~aGa~~~l~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~ 463 (496)
T 3t5t_A 385 NLSTFEAPLVN-ERDADVILSETCGAAEVLGEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEAWV 463 (496)
T ss_dssp CSHHHHHHHHC-SSCCEEEEETTBTTHHHHGGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHH
T ss_pred CHHHHHHHHHC-CCCCCEEEECCCCCHHHHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 90699998817-99988899679888788679889989999999999999997499999999999998999978999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999984887
Q 002468 534 ETFVSELNDTVVE 546 (918)
Q Consensus 534 ~~fl~~l~~~~~~ 546 (918)
++||.+|..+...
T Consensus 464 ~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 464 QAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999998632410
No 2
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=1.00 E-value=1 Score=730.57 Aligned_cols=437 Identities=35% Similarity=0.625 Sum_probs=396.8
Q ss_pred CCEEEEECCCCCCCCCC---C---------CCCCCCEEEEECCCCCCCCHHHHHHH-HHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 71999986676432004---6---------43479089984899999902268999-85239509998538476877678
Q 002468 94 QRLLVVANRLPVSAIRR---G---------VKEFEARWIGWAGVNVPDEIGQKALT-KALAEKRCIPVFLDEDIVHQYYN 160 (918)
Q Consensus 94 ~~livvsnrlP~~~~~~---~---------l~~~~~~Wvgw~g~~~~~~~~~~~~~-~~l~~~~~~pV~l~~~~~~~~y~ 160 (918)
+||||||||+|+..... | +++.+++||||+|.. +++ ++ .+. ....+++|+||||+++++++||+
T Consensus 2 ~~livvsnr~p~~~~~~~~~ggl~~~l~~~~~~~~~~wvgw~g~~-~~~-~~-~~~~~~~~~~~~~~v~l~~~~~~~~y~ 78 (482)
T 1uqt_A 2 SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGET-GNE-DQ-PLKKVKKGNITWASFNLSEQDLDEYYN 78 (482)
T ss_dssp CCEEEEEEECCCCC----CCCHHHHHHHHHHHHHCEEEEEEEEEE-SCC-SS-CCEEEEETTEEEEEEEECHHHHHHHTT
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCC-CCC-CC-HHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 988999889887889986998589999999851797999579998-754-33-023412688349999799899999998
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEE
Q ss_conf 777876674301899984210111311289-9999999999999999863599988999377521279999961899819
Q 002468 161 GYCNNILWPLFHYLGLPQEDRLATTRSFQS-QFAAYIKANQMFADVVNKHYKDGDVVWCHDYHLMFLPKCLKEYNSDMKV 239 (918)
Q Consensus 161 ~f~~~~LWp~~H~~~~~~~~~~~~~~~~~~-~w~~Y~~vN~~fA~~i~~~~~~~DiVwihDyhl~llp~~lr~~~~~~~I 239 (918)
||||++|||+|||+.... .|+. .|.+|+.||+.||+++.+.++++|+|||||||++++|.++|+..++++|
T Consensus 79 gf~~~~lWp~~H~~~~~~--------~~~~~~w~~y~~vN~~fa~~l~~~~~~~DiV~vHdyhl~~l~~~lr~~~~~~~i 150 (482)
T 1uqt_A 79 QFSNAVLWPAFHYRLDLV--------QFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRI 150 (482)
T ss_dssp THHHHTHHHHHTTCGGGC--------CCCHHHHHHHHHHHHHHHHHHGGGCCTTCEEEEESGGGTTHHHHHHHTTCCSCE
T ss_pred HHHHHHCCCCCCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCE
T ss_conf 736610441115767755--------547788999999999999999984488998999773499999999986899968
Q ss_pred EEEECCCCCCHHHHHCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCC-CCEEECCEEEEEEEEECCCCH
Q ss_conf 9998279997455502998079999988387886718999999999999883654689-933317915589995077692
Q 002468 240 GWFLHTPFPSSEIHRTLPSRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTP-EGVEDQGRLTRVAAFPIGIDS 318 (918)
Q Consensus 240 ~~flH~PfPs~e~fr~lP~r~~ll~~ll~aDlIgF~t~~~~~~Fl~~~~r~lg~~~~~-~~i~~~g~~~~v~v~P~GID~ 318 (918)
+||+|+|||++++|+++|++++++++++++|+++||+++|+++|+++|+++++.+... ..+++.|+.+++.++|+|||+
T Consensus 151 ~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~ 230 (482)
T 1uqt_A 151 GFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEP 230 (482)
T ss_dssp EEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCH
T ss_pred EEEECCCCCCHHHHHHCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEECCCCH
T ss_conf 99985899988998548637999976631686788779999999999998718713258748988927899998466797
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 43303304981499999999983698089997054445897899999999788684755857899997499999277999
Q 002468 319 ERFIRALEINPVQVHIKELQETFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQR 398 (918)
Q Consensus 319 ~~f~~~~~~~~~~~~~~~lr~~~~~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~~~~y~~ 398 (918)
+.|.+....+++.+ ...+|++++++++|++||||++.||+..+|+||+++++++|+++++++|+|||.|+++++++|++
T Consensus 231 ~~f~~~~~~~~~~~-~~~lr~~~~~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~ 309 (482)
T 1uqt_A 231 KEIAKQAAGPLPPK-LAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQD 309 (482)
T ss_dssp HHHHHHHHSCCCHH-HHHHHHHTTTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHH
T ss_pred HHHHHHHCCCCHHH-HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 99997742832479-99999985898799997377365798999999999998691302747999997887655277999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCC-CCCCEEEEECCC
Q ss_conf 9999999998640346987844399957989988999999875689978997668826999987048-998439992987
Q 002468 399 LTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQD-LKKGVLILSEFA 477 (918)
Q Consensus 399 l~~~i~~lv~~IN~~~g~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~nLvalEamA~~~-~~~g~lIlSe~a 477 (918)
+++++++++++||++||+.+|.||+||.+.++++++.++|++|||||+||++||||||++|||||+. +++||+|+|+++
T Consensus 310 l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~ 389 (482)
T 1uqt_A 310 IRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFA 389 (482)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTB
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 99999999999754326678740899579899999999999705999897735588269999991888889888997898
Q ss_pred CCHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 801210487399999999999999999953999999999998978998628999999999999984
Q 002468 478 GAAQSLGAGAILVNPWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDT 543 (918)
Q Consensus 478 G~~e~lg~~allVnP~D~~~lA~ai~~aL~m~~~er~~r~~~~~~~V~~~~~~~W~~~fl~~l~~~ 543 (918)
|+++++ .+|++|||+|++++|++|.++|+|++++|++|+++++++|.+||+..|++.|+..+.++
T Consensus 390 G~~~~l-~~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 390 GAANEL-TSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp GGGGTC-TTSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHH-CCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 987995-88189898999999999999981999999999999889999689999999999999844
No 3
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=225.15 Aligned_cols=312 Identities=12% Similarity=0.101 Sum_probs=214.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCHHHH-------------HHHHHHCCEEEEECH
Q ss_conf 9998899937752127999996189981999982799974555029980799-------------999883878867189
Q 002468 211 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHRTLPSRSDL-------------LRAVLAADLVGFHTY 277 (918)
Q Consensus 211 ~~~DiVwihDyhl~llp~~lr~~~~~~~I~~flH~PfPs~e~fr~lP~r~~l-------------l~~ll~aDlIgF~t~ 277 (918)
...|+|+.|++...+++.++++.. ++|+++..|...+.........| +.+ ...+..+|.|...+.
T Consensus 406 ~~PDVIHsH~~~sglva~llar~~-gvP~V~T~Hsl~~~k~~~~~~~~-~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~ 483 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYW-KKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483 (816)
T ss_dssp SCCSEEEEEHHHHHHHHHHHHHHH-TCCEEEECSCCHHHHSTTTTTTH-HHHHHHHCHHHHHHHHHHHHHHSSEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCEEEECCH
T ss_conf 997399968853899999999975-99889998166300122233015-5677888898888899999984999998889
Q ss_pred HHHHHHHHHHHHHHCCCC---CC------CCEEECCEEEEEEEEECCCCHHHHHHHHCCCC----HHHHHHHH-------
Q ss_conf 999999999998836546---89------93331791558999507769243303304981----49999999-------
Q 002468 278 DYARHFVSACTRILGFEG---TP------EGVEDQGRLTRVAAFPIGIDSERFIRALEINP----VQVHIKEL------- 337 (918)
Q Consensus 278 ~~~~~Fl~~~~r~lg~~~---~~------~~i~~~g~~~~v~v~P~GID~~~f~~~~~~~~----~~~~~~~l------- 337 (918)
..++.....+..+ +... .+ .++.... .++.++|+|||.+.|.+...... .......+
T Consensus 484 ~~~~~l~~~~~~y-~~~~~~~~p~Lyr~~~gI~~~~--~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~ 560 (816)
T 3s28_A 484 QEIAGSKETVGQY-ESHTAFTLPGLYRVVHGIDVFD--PKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVEN 560 (816)
T ss_dssp HHHHCCSSSCCTT-GGGSSEEETTTEEEEESCCTTC--TTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCB
T ss_pred HHHHHHHHHHHHH-HHHHCCCCCHHHHCCCCCCCCC--CCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 9999999888776-4420135411221012244677--887998897478872863103554320023200012460567
Q ss_pred HHH-----HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998-----3698089997054445897899999999788684755857899997499--999277999999999999864
Q 002468 338 QET-----FAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPT--RTDVPEYQRLTSQVHEIVGRI 410 (918)
Q Consensus 338 r~~-----~~~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~ps--r~~~~~y~~l~~~i~~lv~~I 410 (918)
++. ..++++|++|||+++.||+..+++|+..+.+.+|+ +.|+++|.+. .....+......++.+++.+.
T Consensus 561 r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~----v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~l 636 (816)
T 3s28_A 561 KEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL----ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEY 636 (816)
T ss_dssp TTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHH----CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC----EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7774445789983999974472217999999999997855799----699999688753334335699999999999974
Q ss_pred HCCCCCCCCCCEEEECC----CCCHHHHHHHHH-HCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC--
Q ss_conf 03469878443999579----899889999998-75689978997668826999987048998439992987801210--
Q 002468 411 NGRFGTLTAVPIHHLDR----SLDFPALCALYA-VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-- 483 (918)
Q Consensus 411 N~~~g~~~~~pV~~l~g----~v~~~el~aly~-~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l-- 483 (918)
+.. ..|. |.| .++.+++..+|+ +|||||+||.+||||++++|||||+ .|+|+|+.+|..+.+
T Consensus 637 gL~------~~V~-flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G----~PVIasd~GG~~EiV~d 705 (816)
T 3s28_A 637 KLN------GQFR-WISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCG----LPTFATCKGGPAEIIVH 705 (816)
T ss_dssp TCB------BBEE-EECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTT----CCEEEESSBTHHHHCCB
T ss_pred CCC------CCEE-ECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCC----CCEEEECCCCHHHHHCC
T ss_conf 998------7289-816755668999999999956909998887557649999999809----99999689876999706
Q ss_pred CCCEEEECCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHH
Q ss_conf 48739999999999999999995----399999999999897899-8628999999999999984
Q 002468 484 GAGAILVNPWNITEVANAIARAL----NMSPEEREKRHWHNFTHV-TTHTAQEWAETFVSELNDT 543 (918)
Q Consensus 484 g~~allVnP~D~~~lA~ai~~aL----~m~~~er~~r~~~~~~~V-~~~~~~~W~~~fl~~l~~~ 543 (918)
+.+|++|+|.|++++|++|.+++ .++ +.++++..++++++ +.++|..+++.++.-.+..
T Consensus 706 g~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~-~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 706 GKSGFHIDPYHGDQAADTLADFFTKCKEDP-SHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp TTTBEEECTTSHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 981899689999999999999998752699-9999999999999998689999999999999997
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=224.19 Aligned_cols=314 Identities=18% Similarity=0.185 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCH---HHHHCC--------C
Q ss_conf 999999999999999863---59998899937752127999996189981999982799974---555029--------9
Q 002468 192 FAAYIKANQMFADVVNKH---YKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSS---EIHRTL--------P 257 (918)
Q Consensus 192 w~~Y~~vN~~fA~~i~~~---~~~~DiVwihDyhl~llp~~lr~~~~~~~I~~flH~PfPs~---e~fr~l--------P 257 (918)
+..+..+.+.....+... ....|+|++|+++..+++.++++. .+.++++.+|..++.. ..+... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~-~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 177 (439)
T 3fro_A 99 IRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY-FKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYP 177 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH-HCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 232578999999999997444799819994640343458988652-6997899965344456856774745510035666
Q ss_pred CHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 80799999883878867189999999999998836546899333179155899950776924330330498149999999
Q 002468 258 SRSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKEL 337 (918)
Q Consensus 258 ~r~~ll~~ll~aDlIgF~t~~~~~~Fl~~~~r~lg~~~~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~~~~~~~~~~l 337 (918)
........+..+|.|.+.+..+++... ..++. ...++.++|+|||.+.|.+....+........+
T Consensus 178 ~~~~~~~~~~~ad~ii~~S~~~~~~~~----~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~ 242 (439)
T 3fro_A 178 DIDPEHTGGYIADIVTTVSRGYLIDEW----GFFRN-----------FEGKITYVFNGIDCSFWNESYLTGSRDERKKSL 242 (439)
T ss_dssp EECHHHHHHHHCSEEEESCHHHHHHTH----HHHGG-----------GTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHH
T ss_pred EEEHHHHHHHHCCEEEECCHHHHHHHH----HHHHH-----------CCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 320766655434588726898999986----05650-----------477345347888804308432211045669999
Q ss_pred HHHH--CCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHC--CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9983--6980899970544-4589789999999978868--475585789999749999927799999999999986403
Q 002468 338 QETF--AGRKVMLGVDRLD-MIKGIPQKLLAFEKFLEEN--SDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRING 412 (918)
Q Consensus 338 r~~~--~~~~iIl~VdRLd-~~KGi~~~L~Af~~ll~~~--P~~~~kv~Lvqi~~psr~~~~~y~~l~~~i~~lv~~IN~ 412 (918)
++.+ .+.++|+++||+. +.||+..+++|++.+.+++ |+ +.|+++|. ++ ..+...+++++.+.+
T Consensus 243 ~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~----~~l~i~G~-----g~--~~~~~~l~~~~~~~~- 310 (439)
T 3fro_A 243 LSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQE----MRFIIIGK-----GD--PELEGWARSLEEKHG- 310 (439)
T ss_dssp HHHHTCCSCEEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGG----EEEEEECC-----CC--HHHHHHHHHHHHHCT-
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC----EEEEEECC-----CC--HHHHHHHHHHHHHCC-
T ss_conf 9973999984799973335343669999999999985466787----18999807-----97--267789999875069-
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC-CCCEEEEC
Q ss_conf 46987844399957989988999999875689978997668826999987048998439992987801210-48739999
Q 002468 413 RFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL-GAGAILVN 491 (918)
Q Consensus 413 ~~g~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l-g~~allVn 491 (918)
.++++.|.++.+++..+|+.||++|+||..|||+++.+|||||+ .|+|+|+.+|..+.+ ..+|++++
T Consensus 311 --------~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G----~Pvi~s~~~~~~e~~~~~~g~~~~ 378 (439)
T 3fro_A 311 --------NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLG----AIPIASAVGGLRDIITNETGILVK 378 (439)
T ss_dssp --------TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTT----CEEEEESSTHHHHHCCTTTCEEEC
T ss_pred --------CEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCC----CCEEECCCCCCCEEEECCCEEEEC
T ss_conf --------89997287998899999997799995898788618999999779----976973788743168758448968
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999995399999999999897899862899999999999998488
Q 002468 492 PWNITEVANAIARALNMSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVV 545 (918)
Q Consensus 492 P~D~~~lA~ai~~aL~m~~~er~~r~~~~~~~V~~~~~~~W~~~fl~~l~~~~~ 545 (918)
|.|++++|++|.+++.+.++.++.+....+++++.+++..+++.++..+++...
T Consensus 379 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 379 AGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp TTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSC
T ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 899899999999998319999999999999987647299999999999999997
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=222.33 Aligned_cols=297 Identities=18% Similarity=0.188 Sum_probs=205.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHC------CCCEEEEEECCCCCC----HHHHH--CCCC--------------------
Q ss_conf 999889993775212799999618------998199998279997----45550--2998--------------------
Q 002468 211 KDGDVVWCHDYHLMFLPKCLKEYN------SDMKVGWFLHTPFPS----SEIHR--TLPS-------------------- 258 (918)
Q Consensus 211 ~~~DiVwihDyhl~llp~~lr~~~------~~~~I~~flH~PfPs----~e~fr--~lP~-------------------- 258 (918)
.++||+++||+|..++|.+++... .+.+++|+.|..-.. .+.+. .++.
T Consensus 152 ~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (536)
T 3vue_A 152 GEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRK 231 (536)
T ss_dssp CSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCCCCC
T ss_conf 99879997760489999999986402332025634542157422455553336441896564010333311464100330
Q ss_pred HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHCC--------CCH
Q ss_conf 079999988387886718999999999999883654689933317915589995077692433033049--------814
Q 002468 259 RSDLLRAVLAADLVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEI--------NPV 330 (918)
Q Consensus 259 r~~ll~~ll~aDlIgF~t~~~~~~Fl~~~~r~lg~~~~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~--------~~~ 330 (918)
-..+..++..||.|..-++.|++..+. ..+. ...+....+..++.++|||||.+.|.+.... ...
T Consensus 232 ~n~~k~~i~~ad~v~tVS~~~a~ei~~----~~~~---g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~ 304 (536)
T 3vue_A 232 INWMKAGILEADRVLTVSPYYAEELIS----GIAR---GCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTA 304 (536)
T ss_dssp EEHHHHHHHHCSEEEESCHHHHHHHHT----TCCC---CSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTH
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHC----CCCC---CCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCHHHH
T ss_conf 439999998536778768788534312----6344---522001254578189979966421488776210014443455
Q ss_pred ---H-HHHHHHHHHH-----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf ---9-9999999983-----698089997054445897899999999788684755857899997499999277999999
Q 002468 331 ---Q-VHIKELQETF-----AGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTS 401 (918)
Q Consensus 331 ---~-~~~~~lr~~~-----~~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~~~~y~~l~~ 401 (918)
+ .....+++.+ .+.++|++|||+++.||+..+++|+++++++.+ .|+++|. ++. . ...
T Consensus 305 ~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~------~l~l~G~---G~~-~---~~~ 371 (536)
T 3vue_A 305 IEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDV------QIVLLGT---GKK-K---FEK 371 (536)
T ss_dssp HHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSC------EEEEECC---BCH-H---HHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC------EEEEEEC---CCC-H---HHH
T ss_conf 56567779999986199879997589999653023784789999997685498------5999954---672-6---899
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 99999986403469878443999579899889999998756899789976688269999870489984399929878012
Q 002468 402 QVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQ 481 (918)
Q Consensus 402 ~i~~lv~~IN~~~g~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e 481 (918)
.++.+....+. .+. +.+..+.+++..+|+.||+||+||.+||||++.+|||+|+ .|+|+|+.+|..+
T Consensus 372 ~~~~~~~~~~~--------~v~-~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G----~PvI~s~~gG~~e 438 (536)
T 3vue_A 372 LLKSMEEKYPG--------KVR-AVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYG----TPCACASTGGLVD 438 (536)
T ss_dssp HHHHHHHHSTT--------TEE-EECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTT----CCEEECSCTHHHH
T ss_pred HHHHHHHHCCC--------CEE-EEEECCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCC----CCEEECCCCCCHH
T ss_conf 99998761688--------549-9971468889999986234253465689888999999869----9899907998222
Q ss_pred HC--CCCEE----------EECCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 10--48739----------9999999999999999953--999999999998978998628999999999999984
Q 002468 482 SL--GAGAI----------LVNPWNITEVANAIARALN--MSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDT 543 (918)
Q Consensus 482 ~l--g~~al----------lVnP~D~~~lA~ai~~aL~--m~~~er~~r~~~~~~~V~~~~~~~W~~~fl~~l~~~ 543 (918)
.+ |.+|+ +|+|.|++++|++|.++|. ..+ +++++.++. ..+.++|..-+++++.-..+.
T Consensus 439 ~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~-~~~~~~~~a--m~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 439 TVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTP-AYEEMVRNC--MNQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp HCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHH--HHSCCSSHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHH--HHHCCCHHHHHHHHHHHHHHH
T ss_conf 0227987632466777515879999999999999999852959-999999998--773599999999999999986
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=217.16 Aligned_cols=304 Identities=16% Similarity=0.089 Sum_probs=215.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHCC----C---------CHHHH-HHHHHHCCEEEEE
Q ss_conf 999889993775212799999618998199998279997455-5029----9---------80799-9998838788671
Q 002468 211 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEI-HRTL----P---------SRSDL-LRAVLAADLVGFH 275 (918)
Q Consensus 211 ~~~DiVwihDyhl~llp~~lr~~~~~~~I~~flH~PfPs~e~-fr~l----P---------~r~~l-l~~ll~aDlIgF~ 275 (918)
.+.|+||+|.+...+++.++.+. ...++++..|..++.... +... | .+..+ ...+..+|.|.+.
T Consensus 119 ~~~Divh~~~~~~~~~~~~~~~~-~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 197 (499)
T 2r60_A 119 KFPQVVTTHYGDGGLAGVLLKNI-KGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVS 197 (499)
T ss_dssp CCCSEEEEEHHHHHHHHHHHHHH-HCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEES
T ss_pred CCCCEEEECCCCCHHHHHHHHHH-CCCCEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99888997578620799998873-59968998068400111344147877612455678889999999998468999988
Q ss_pred CHHHHHHHHHHHHHH--HC-CCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH--------CCC
Q ss_conf 899999999999988--36-5468993331791558999507769243303304981499999999983--------698
Q 002468 276 TYDYARHFVSACTRI--LG-FEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF--------AGR 344 (918)
Q Consensus 276 t~~~~~~Fl~~~~r~--lg-~~~~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~~~~~~~~~~lr~~~--------~~~ 344 (918)
+....+.+.. . ++ ... .....++.++|+|||.+.|.+... .+....+++++ .++
T Consensus 198 S~~~~~~~~~----~~~~g~~~~-------~~~~~ki~vi~ngvd~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~ 262 (499)
T 2r60_A 198 TSQERFGQYS----HDLYRGAVN-------VEDDDKFSVIPPGVNTRVFDGEYG----DKIKAKITKYLERDLGSERMEL 262 (499)
T ss_dssp SHHHHHHTTT----SGGGTTTCC-------TTCGGGEEECCCCBCTTTSSSCCC----HHHHHHHHHHHHHHSCGGGTTS
T ss_pred CHHHHHHHHH----HHCCCCCCC-------CCCCCCEEEECCCCCHHHCCCCCH----HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8899999986----412464223-------467887699879958665686410----3567899988364334568887
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC------H-HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 089997054445897899999999788684755857899997499999------2-779999999999998640346987
Q 002468 345 KVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTD------V-PEYQRLTSQVHEIVGRINGRFGTL 417 (918)
Q Consensus 345 ~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~------~-~~y~~l~~~i~~lv~~IN~~~g~~ 417 (918)
++|+++||+.+.||+..+++|+..+.+++|+. +.|+++|... +. . .....+..++++++.+.+..
T Consensus 263 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~---~~l~i~G~~~-~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~---- 334 (499)
T 2r60_A 263 PAIIASSRLDQKKNHYGLVEAYVQNKELQDKA---NLVLTLRGIE-NPFEDYSRAGQEEKEILGKIIELIDNNDCR---- 334 (499)
T ss_dssp CEEEECSCCCGGGCHHHHHHHHHTCHHHHHHC---EEEEEESSCS-BTTTBCTTSCHHHHHHHHHHHHHHHHTTCB----
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC---EEEEEECCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----
T ss_conf 68999606850158899999999998738886---5999987888-753221111320147999999999864998----
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHC----CEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC--CCCEEEEC
Q ss_conf 844399957989988999999875----689978997668826999987048998439992987801210--48739999
Q 002468 418 TAVPIHHLDRSLDFPALCALYAVT----DVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVN 491 (918)
Q Consensus 418 ~~~pV~~l~g~v~~~el~aly~~A----DV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l--g~~allVn 491 (918)
..|+ |.|.++.+++..+|+.| |++|+||.+|||+++.+|||||+ .|+|+|+.+|..+.+ +.+|++|+
T Consensus 335 --~~V~-~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G----~PvI~s~~~g~~e~v~~~~~g~l~~ 407 (499)
T 2r60_A 335 --GKVS-MFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASG----LPAVVTRNGGPAEILDGGKYGVLVD 407 (499)
T ss_dssp --TTEE-EEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTT----CCEEEESSBHHHHHTGGGTSSEEEC
T ss_pred --CEEE-ECCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCC----CCEEEECCCCHHHHHCCCCEEEEEC
T ss_conf --6099-87889989999999955767988997864589796899999769----9889816887788734786079958
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999539999999999989789986-28999999999999984887
Q 002468 492 PWNITEVANAIARALNMSPEEREKRHWHNFTHVTT-HTAQEWAETFVSELNDTVVE 546 (918)
Q Consensus 492 P~D~~~lA~ai~~aL~m~~~er~~r~~~~~~~V~~-~~~~~W~~~fl~~l~~~~~~ 546 (918)
|.|++++|++|.+++.+ ++.++.+..+.++++.. +++...++.++..+++....
T Consensus 408 ~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 408 PEDPEDIARGLLKAFES-EETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADR 462 (499)
T ss_dssp TTCHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999869-99999999999999987579999999999999998732
No 7
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=209.60 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=216.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-CC----C-CHHHHHH-HHHHCCEEEEECHHHHHH
Q ss_conf 599988999377521279999961899819999827999745550-29----9-8079999-988387886718999999
Q 002468 210 YKDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSSEIHR-TL----P-SRSDLLR-AVLAADLVGFHTYDYARH 282 (918)
Q Consensus 210 ~~~~DiVwihDyhl~llp~~lr~~~~~~~I~~flH~PfPs~e~fr-~l----P-~r~~ll~-~ll~aDlIgF~t~~~~~~ 282 (918)
.+..|+|++|++....++.++.+. .+.++++.+|..++...... .. + .+..+.+ .+..+|.|.+.+....+.
T Consensus 120 ~~~~Div~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 198 (438)
T 3c48_A 120 KVTYDLIHSHYWLSGQVGWLLRDL-WRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQD 198 (438)
T ss_dssp TCCCSEEEEEHHHHHHHHHHHHHH-HTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHH
T ss_pred CCCCCEEEECCCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHH
T ss_conf 689998994775578999999997-4999899942774011111002677315789999999984089999847999999
Q ss_pred HHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCCH
Q ss_conf 99999988365468993331791558999507769243303304981499999999983---698089997054445897
Q 002468 283 FVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEINPVQVHIKELQETF---AGRKVMLGVDRLDMIKGI 359 (918)
Q Consensus 283 Fl~~~~r~lg~~~~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~iIl~VdRLd~~KGi 359 (918)
+.. .++. ...++.++|+|||.+.|.+... .....+++.+ .++++|+++||+.+.||+
T Consensus 199 ~~~----~~g~-----------~~~k~~vi~ngvd~~~~~~~~~-----~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~ 258 (438)
T 3c48_A 199 LMH----HYDA-----------DPDRISVVSPGADVELYSPGND-----RATERSRRELGIPLHTKVVAFVGRLQPFKGP 258 (438)
T ss_dssp HHH----HHCC-----------CGGGEEECCCCCCTTTSCCC---------CHHHHHHTTCCSSSEEEEEESCBSGGGCH
T ss_pred HHH----HHCC-----------CHHHEEEECCCCCCCCCCCCCC-----CHHHHHHHHCCCCCCCCEEEEEEEECCCCCH
T ss_conf 999----8589-----------8202688269766110478662-----0245668860899898489997431566798
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 89999999978868475585789999749999927799999999999986403469878443999579899889999998
Q 002468 360 PQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYA 439 (918)
Q Consensus 360 ~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~~~~y~~l~~~i~~lv~~IN~~~g~~~~~pV~~l~g~v~~~el~aly~ 439 (918)
..+++|+..+.+++|+. ++.|+++|.+.. +++ +..++++++.+.+.. ..|. |.|.++.+++..+|+
T Consensus 259 ~~li~a~~~l~~~~p~~--~~~l~i~G~~~~-~g~----~~~~l~~~~~~~~l~------~~v~-~~g~~~~~~~~~~~~ 324 (438)
T 3c48_A 259 QVLIKAVAALFDRDPDR--NLRVIICGGPSG-PNA----TPDTYRHMAEELGVE------KRIR-FLDPRPPSELVAVYR 324 (438)
T ss_dssp HHHHHHHHHHHHHCTTC--SEEEEEECCBC-----------CHHHHHHHHTTCT------TTEE-EECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--CEEEEEEECCCC-CCC----HHHHHHHHHHHCCCC------CCEE-ECCCCCHHHHHHHHH
T ss_conf 99999999999639776--669999818887-772----789999999971987------8689-858898588999998
Q ss_pred HCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC--CCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 75689978997668826999987048998439992987801210--4873999999999999999999539999999999
Q 002468 440 VTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVANAIARALNMSPEEREKRH 517 (918)
Q Consensus 440 ~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l--g~~allVnP~D~~~lA~ai~~aL~m~~~er~~r~ 517 (918)
.||++|+||..|||+++.+|||||+ .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.+++++ ++.++++.
T Consensus 325 ~adv~v~ps~~e~~~~~~~Eama~G----~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~ 399 (438)
T 3c48_A 325 AADIVAVPSFNESFGLVAMEAQASG----TPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD-DETRIRMG 399 (438)
T ss_dssp HCSEEEECCSCCSSCHHHHHHHHTT----CCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC-HHHHHHHH
T ss_pred HCCEEEECCCCCCCCHHHHHHHHCC----CCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC-HHHHHHHH
T ss_conf 5899998740268755999998769----988962798725775079727987999999999999999759-89999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98978998628999999999999984887
Q 002468 518 WHNFTHVTTHTAQEWAETFVSELNDTVVE 546 (918)
Q Consensus 518 ~~~~~~V~~~~~~~W~~~fl~~l~~~~~~ 546 (918)
.+.++++..+++...++.++..++++...
T Consensus 400 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 400 EDAVEHARTFSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999988579999999999999998631
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=208.82 Aligned_cols=301 Identities=18% Similarity=0.132 Sum_probs=210.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCH----HHHHC--CC-------------CHHHHHHHHHHCCE
Q ss_conf 9998899937752127999996189981999982799974----55502--99-------------80799999883878
Q 002468 211 KDGDVVWCHDYHLMFLPKCLKEYNSDMKVGWFLHTPFPSS----EIHRT--LP-------------SRSDLLRAVLAADL 271 (918)
Q Consensus 211 ~~~DiVwihDyhl~llp~~lr~~~~~~~I~~flH~PfPs~----e~fr~--lP-------------~r~~ll~~ll~aDl 271 (918)
...|+|++|+++..+++.+++.+..+.++++..|..++.. ..+.. ++ ........+..+|.
T Consensus 128 ~~~Divh~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 207 (485)
T 2qzs_A 128 WRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADH 207 (485)
T ss_dssp CCCSEEEEETGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCE
T ss_conf 89978996062133789997543689978999468413578898888764999132131112324654699999875386
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCEE--EEEEEEECCCCHHHHHHHHCC-----------CCHHHHHHHHH
Q ss_conf 86718999999999999883654689933317915--589995077692433033049-----------81499999999
Q 002468 272 VGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRL--TRVAAFPIGIDSERFIRALEI-----------NPVQVHIKELQ 338 (918)
Q Consensus 272 IgF~t~~~~~~Fl~~~~r~lg~~~~~~~i~~~g~~--~~v~v~P~GID~~~f~~~~~~-----------~~~~~~~~~lr 338 (918)
|.+.+....+.+... .++.... ..+ .... .++.++|+|||.+.|.+.... +.-......++
T Consensus 208 vi~~S~~~~~~~~~~---~~~~~~~-~~~--~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 281 (485)
T 2qzs_A 208 ITAVSPTYAREITEP---QFAYGME-GLL--QQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQ 281 (485)
T ss_dssp EEESSHHHHHHTTSH---HHHTTCH-HHH--HHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHH
T ss_pred EEECCHHHHHHHHCC---CCCCCHH-HHH--HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 885688999998540---1472468-999--8506678669974698766458644422212366300657788499999
Q ss_pred HHHC-----CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9836-----98089997054445897899999999788684755857899997499999277999999999999864034
Q 002468 339 ETFA-----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGR 413 (918)
Q Consensus 339 ~~~~-----~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~~~~y~~l~~~i~~lv~~IN~~ 413 (918)
++++ +.++|+++||+++.||+..+++|+..+.+. ++.|+++|. ++. .+.+++++++.+.+
T Consensus 282 ~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~------~~~l~ivG~-----g~~--~~~~~l~~~~~~~~-- 346 (485)
T 2qzs_A 282 IAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQ------GGQLALLGA-----GDP--VLQEGFLAAAAEYP-- 346 (485)
T ss_dssp HHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHT------TCEEEEEEE-----ECH--HHHHHHHHHHHHST--
T ss_pred HHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC------CCEEEEEEC-----CCH--HHHHHHHHHHHHCC--
T ss_conf 871988899973999966675435879999999998627------948999928-----956--78999999997579--
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC--C-------
Q ss_conf 6987844399957989988999999875689978997668826999987048998439992987801210--4-------
Q 002468 414 FGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--G------- 484 (918)
Q Consensus 414 ~g~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l--g------- 484 (918)
..|+++.|. +.+++..+|+.||++|+||.+|||+++.+|||||+ .|+|+|+.+|..+.+ +
T Consensus 347 ------~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G----~PvI~s~~gg~~e~v~~~~~~~~~~ 415 (485)
T 2qzs_A 347 ------GQVGVQIGY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYG----TLPLVRRTGGLADTVSDCSLENLAD 415 (485)
T ss_dssp ------TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHT----CEEEEESSHHHHHHCCBCCHHHHHT
T ss_pred ------CCEEEECCC-CHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCC----CCEEECCCCCCCCEECCCCCCCCCC
T ss_conf ------938994789-97999999975889997885678767999999779----9779878998325521576443444
Q ss_pred --CCEEEECCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf --87399999999999999999953--99999999999897899862899999999999998488
Q 002468 485 --AGAILVNPWNITEVANAIARALN--MSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVV 545 (918)
Q Consensus 485 --~~allVnP~D~~~lA~ai~~aL~--m~~~er~~r~~~~~~~V~~~~~~~W~~~fl~~l~~~~~ 545 (918)
.+|++|+|.|++++|++|.+++. ..++.++++..+.+. +.+++...++.++.-+++...
T Consensus 416 ~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 416 GVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp TCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHH
T ss_conf 666459977899999999999999870899999999999876--328989999999999998654
No 9
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=1.00 E-value=1 Score=208.33 Aligned_cols=225 Identities=16% Similarity=0.243 Sum_probs=168.1
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCEEEEECCE
Q ss_conf 92999926865589988999887620101246796599999994109998099985899665999720029539912746
Q 002468 572 NRLLILGFNATLTEPVDTPGRRGDQIREMELKLHPDLKQPLNALCHDPKTTIVVLSGSDRNVLDKNFQEYNLWLAAENGM 651 (918)
Q Consensus 572 ~rLi~lD~DGTL~~~~~~p~~~~~~~~~~~~~~~~~~~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l~liaenG~ 651 (918)
.+||++|+||||++...+| ....++++++++|++|++. | .|+|+|||++..+..++..+ +++|++||+
T Consensus 1 ikli~~DlDGTLl~~~~~~---------~~~~i~~~~~~al~~l~~~-g-~v~iaTGR~~~~~~~~~~~l-~~~I~~nGa 68 (239)
T 1u02_A 1 MSLIFLDYDGTLVPIIMNP---------EESYADAGLLSLISDLKER-F-DTYIVTGRSPEEISRFLPLD-INMICYHGA 68 (239)
T ss_dssp -CEEEEECBTTTBCCCSCG---------GGCCCCHHHHHHHHHHHHH-S-EEEEECSSCHHHHHHHSCSS-CEEEEGGGT
T ss_pred CEEEEEECCCCCCCCCCCC---------CCCCCCHHHHHHHHHHHCC-C-CEEEEECCCHHHHHHHHCCC-HHEEEECCE
T ss_conf 9699991588776898894---------5577897899999998349-9-99999498999999986012-240788788
Q ss_pred EEEECCCEEEEECCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999539814330565579578-9999999999880499815521021279984135746658999999999731998999
Q 002468 652 FLRCTTGKWMTTMPEHLNMEW-VDSLKHVFEYFTERTPRSHFEQRETSLVWNYKYADVEFGRIQARDMLQHLWTGPISNA 730 (918)
Q Consensus 652 ~i~~~~~~w~~~~~~~~~~~w-~~~v~~il~~~~~r~~Gs~iE~K~~si~~hyr~ad~e~~~~qa~el~~~L~~~~~~~~ 730 (918)
++.. ++.+....+......+ .+.+..+++.+ .+.++.+++.++..+.++|+..+.. .....+.+.+.+ ... .
T Consensus 69 ~i~~-~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~---~ 141 (239)
T 1u02_A 69 CSKI-NGQIVYNNGSDRFLGVFDRIYEDTRSWV-SDFPGLRIYRKNLAVLYHLGLMGAD-MKPKLRSRIEEI-ARI---F 141 (239)
T ss_dssp EEEE-TTEEEECTTGGGGHHHHHHHHHHHTTHH-HHSTTCEEEEETTEEEEECTTSCST-THHHHHHHHHHH-HHH---H
T ss_pred EEEE-CCEEEECCCCCCCCHHHHHHHHHHHHHH-HHCCCCEEEECCCEEEEECCCCCHH-HHHHHHHHHHHH-HCC---C
T ss_conf 9961-8824303454234125699999999998-3189948995288899982889865-899999999987-405---8
Q ss_pred CEEEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76999849099999699999999999999818588789997329999259997399998748589999999988888887
Q 002468 731 SVEVVQGSKSVEVRAVGVTKGAAIDRILAEIVHSKKMKTAIDYVLCIGHFLGKDEDVYAFFEPELPDDGPGIPRTRPTDA 810 (918)
Q Consensus 731 ~v~v~~g~~~vEI~p~gvnKG~ai~~Ll~~~~~~~~~~~~~d~vi~iGD~d~tDEdMF~~~~~~~~~~~~~~~~~~~~~~ 810 (918)
.+.+..+..++||.|+++|||.|++.|++++ . ++|||| +.||++||+.+.
T Consensus 142 ~~~~~~~~~~lei~~~~~~Kg~al~~l~~~~--------g---via~GD-~~ND~~Ml~~a~------------------ 191 (239)
T 1u02_A 142 GVETYYGKMIIELRVPGVNKGSAIRSVRGER--------P---AIIAGD-DATDEAAFEAND------------------ 191 (239)
T ss_dssp TCEEEECSSEEEEECTTCCHHHHHHHHHTTS--------C---EEEEES-SHHHHHHHHTTT------------------
T ss_pred CCEEEECCCEEEEECCCCCHHHHHHHHHHHC--------C---EEEEEC-CCCCHHHHHHHH------------------
T ss_conf 9589937768999869998899999998638--------8---499958-875699999752------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEE
Q ss_conf 67852011123320258865555877788888888889988888778998866422124789860899978999843144
Q 002468 811 IKVPGERRQALKVASRGSSKISQGKTQRPAQAPEKKTPNHNCTNVRQPSSDKTSYNVLDLNKENYFSCAVGRPRTNARFL 890 (918)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VG~~~t~A~~~ 890 (918)
.+++++||..++.|+|.
T Consensus 192 ---------------------------------------------------------------~g~~vam~Na~~~A~~v 208 (239)
T 1u02_A 192 ---------------------------------------------------------------DALTIKVGEGETHAKFH 208 (239)
T ss_dssp ---------------------------------------------------------------TSEEEEESSSCCCCSEE
T ss_pred ---------------------------------------------------------------CCCEEEECCCCCCCEEE
T ss_conf ---------------------------------------------------------------88189989988744189
Q ss_pred CCC---HHHHHHHHHHHHHHC
Q ss_conf 189---889999999977301
Q 002468 891 LQS---SDEVVSFLKKLADAS 908 (918)
Q Consensus 891 l~~---~~~V~~~L~~L~~~~ 908 (918)
+.+ .+.|..+|+.+....
T Consensus 209 ~~~~~~~~gV~~~l~~~~~~~ 229 (239)
T 1u02_A 209 VADYIEMRKILKFIEMLGVQK 229 (239)
T ss_dssp ESSHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHC
T ss_conf 689887899999999999853
No 10
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=207.67 Aligned_cols=301 Identities=17% Similarity=0.180 Sum_probs=210.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEECCCCCCH----HHHHC--CCC-------------HHHHHHHHHHCC
Q ss_conf 99988999377521279999961-89981999982799974----55502--998-------------079999988387
Q 002468 211 KDGDVVWCHDYHLMFLPKCLKEY-NSDMKVGWFLHTPFPSS----EIHRT--LPS-------------RSDLLRAVLAAD 270 (918)
Q Consensus 211 ~~~DiVwihDyhl~llp~~lr~~-~~~~~I~~flH~PfPs~----e~fr~--lP~-------------r~~ll~~ll~aD 270 (918)
...|+|++|+++..+++.++++. ..+.++++..|..++.. ..+.. ++. .......+..+|
T Consensus 129 ~~~DiIh~~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 208 (485)
T 1rzu_A 129 WRPDMVHAHDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTAT 208 (485)
T ss_dssp CCCSEEEEEHHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCS
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 99988996463055789997310358997899966754468788778734399803202000132562359998886467
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHCC-----------CCHHHHHHHHHH
Q ss_conf 886718999999999999883654689933317915589995077692433033049-----------814999999999
Q 002468 271 LVGFHTYDYARHFVSACTRILGFEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALEI-----------NPVQVHIKELQE 339 (918)
Q Consensus 271 lIgF~t~~~~~~Fl~~~~r~lg~~~~~~~i~~~g~~~~v~v~P~GID~~~f~~~~~~-----------~~~~~~~~~lr~ 339 (918)
.|.+.+....+.+... .+|... .. .+.-...++.++|+|||.+.|.+.... +.-.+....+++
T Consensus 209 ~vi~~S~~~~~~~~~~---~~g~~~--~~-~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 1rzu_A 209 ALSTVSPSYAEEILTA---EFGMGL--EG-VIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282 (485)
T ss_dssp EEEESCHHHHHHTTSH---HHHTTC--HH-HHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHCC---CCCCCH--HH-HHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7996087589998354---357665--89-99860688169708986020588665110001243244567886999999
Q ss_pred HHC----CCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 836----9808999705444589789999999978868475585789999749999927799999999999986403469
Q 002468 340 TFA----GRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSDWRGKVVLLQIAVPTRTDVPEYQRLTSQVHEIVGRINGRFG 415 (918)
Q Consensus 340 ~~~----~~~iIl~VdRLd~~KGi~~~L~Af~~ll~~~P~~~~kv~Lvqi~~psr~~~~~y~~l~~~i~~lv~~IN~~~g 415 (918)
+++ +.++|++|||+++.||+..+++|+..+.+. ++.|+++|. ++. .+.+++++++.+.+
T Consensus 283 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~------~~~l~ivG~-----g~~--~~~~~l~~~~~~~~---- 345 (485)
T 1rzu_A 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL------GGRLVVLGA-----GDV--ALEGALLAAASRHH---- 345 (485)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT------TCEEEEEEC-----BCH--HHHHHHHHHHHHTT----
T ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC------CCEEEEEEC-----CCH--HHHHHHHHHHHHCC----
T ss_conf 6298889983999972575312879999999998726------956999968-----946--89999999998678----
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHC--C---------
Q ss_conf 87844399957989988999999875689978997668826999987048998439992987801210--4---------
Q 002468 416 TLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDLKKGVLILSEFAGAAQSL--G--------- 484 (918)
Q Consensus 416 ~~~~~pV~~l~g~v~~~el~aly~~ADV~vvtSl~EG~nLvalEamA~~~~~~g~lIlSe~aG~~e~l--g--------- 484 (918)
..|+++.|. +.+++..+|+.||++|+||.+|||+++.+|||||+ .|+|+|+.+|..+.+ +
T Consensus 346 ----~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G----~PvI~s~~gg~~e~v~~~~~~~~~~~~ 416 (485)
T 1rzu_A 346 ----GRVGVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYG----CIPVVARTGGLADTVIDANHAALASKA 416 (485)
T ss_dssp ----TTEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHT----CEEEEESSHHHHHHCCBCCHHHHHTTC
T ss_pred ----CCEEEECCC-CHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCC----CCEEEECCCCHHHEECCCCCCCCCCCC
T ss_conf ----868994389-97999999852999997844688777999999779----977980899831132156533234567
Q ss_pred CCEEEECCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 87399999999999999999953--99999999999897899862899999999999998488
Q 002468 485 AGAILVNPWNITEVANAIARALN--MSPEEREKRHWHNFTHVTTHTAQEWAETFVSELNDTVV 545 (918)
Q Consensus 485 ~~allVnP~D~~~lA~ai~~aL~--m~~~er~~r~~~~~~~V~~~~~~~W~~~fl~~l~~~~~ 545 (918)
.+|++|+|.|++++|++|.+++. ..++.++++..+.++ +.+++...++.++...++...
T Consensus 417 ~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 417 ATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMK--SDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp CCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--CCCBHHHHHHHHHHHHHHHTC
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHC
T ss_conf 7634867899999999999999872799999999999998--868969999999999998637
Done!