BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002469
         (918 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 609 GWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 668
           G+   ++TED  T  ++H+RGW+S+Y    R    G  P   +  + Q  RWA G +++L
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391

Query: 669 FSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLL 716
             ++     G G      +R  Y+N+  +    +  +M+   P + L 
Sbjct: 392 LLKNPLFRRGLG----IAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLF 435



 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 357 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 416
           +VY +RE+      H KAG M+A +        G  ++  D DH  +     R    F+ 
Sbjct: 214 VVYSTRER----NEHAKAGNMSAALE----RLKGELVVVFDADHVPSRDFLARTVGYFVE 265

Query: 417 DPNLGKHVCYVQFPQRF---DGIDRN----DRYANRNTVFFDINLRGLDGIQGPVYVGTG 469
           DP+L      VQ P  F   D I RN    DR    N +F+    RGLD   G  + G+ 
Sbjct: 266 DPDL----FLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSA 321

Query: 470 CVFNRTAL 477
            V  R AL
Sbjct: 322 AVLRRRAL 329


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,751,646
Number of Sequences: 62578
Number of extensions: 1164460
Number of successful extensions: 2334
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2332
Number of HSP's gapped (non-prelim): 3
length of query: 918
length of database: 14,973,337
effective HSP length: 108
effective length of query: 810
effective length of database: 8,214,913
effective search space: 6654079530
effective search space used: 6654079530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)