BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002470
         (918 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12K61|SURA_SHEDO Chaperone SurA OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=surA PE=3 SV=1
          Length = 434

 Score = 36.2 bits (82), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 66/119 (55%), Gaps = 8/119 (6%)

Query: 155 NKGVNLGSNLGKSSGISVTSNFVSRNEKRSSDVGLKVEKYDKVDVLNSENRL-EKIDRSV 213
           N G+ L S +G     +V +N    N+   S+  L+ +  +++ +   + ++ E+I   +
Sbjct: 35  NDGIILESEIGNMLA-TVRANANKSNQTLPSEQALRTQVIERLILTRLQLQMAERIGLQI 93

Query: 214 G-LGLNESDEKISRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQ 271
           G L L+++ E I++D K++ +  ++ L  +GLS     ++  +L E++T   G+++RIQ
Sbjct: 94  GDLQLDQTIESIAKDQKLTVSQLQQQLENDGLSFS---QYREQLREEITL--GEIQRIQ 147


>sp|Q730M0|GRPE_BACC1 Protein GrpE OS=Bacillus cereus (strain ATCC 10987) GN=grpE PE=3
           SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 255 KLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKL----ILSDIQEKISGIEKAMGNV 310
           +L  KLT  EG++ R+Q+D +  K  + M+   A K     ++SDI   +   E+AM   
Sbjct: 49  ELQAKLTETEGRMLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERAMQVE 108

Query: 311 AGDSGVK 317
           A D  +K
Sbjct: 109 ANDEQMK 115


>sp|B7HPL4|GRPE_BACC7 Protein GrpE OS=Bacillus cereus (strain AH187) GN=grpE PE=3 SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 225 SRDSKVSETLKEKSLSEEGLSTKVGVKFPSKLHEKLTFLEGKVKRIQSDIKRTKEMLDMN 284
           S DS+  ET++EKS +   L  KV      +L  KLT  EG++ R+Q+D +  K  + M+
Sbjct: 27  SEDSE--ETVEEKSEAAL-LQEKV-----DELQAKLTETEGRMLRLQADFENYKRRVQMD 78

Query: 285 NPDATKL----ILSDIQEKISGIEKAMGNVAGDSGVK 317
              A K     ++SDI   +   E+AM   A D  +K
Sbjct: 79  KQAAEKYRAQSLVSDILPALDNFERAMQVEATDEQMK 115


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,839,323
Number of Sequences: 539616
Number of extensions: 15034926
Number of successful extensions: 38378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 38122
Number of HSP's gapped (non-prelim): 431
length of query: 918
length of database: 191,569,459
effective HSP length: 127
effective length of query: 791
effective length of database: 123,038,227
effective search space: 97323237557
effective search space used: 97323237557
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)