Query 002470
Match_columns 918
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 00:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 98.5 6.3E-05 1.4E-09 65.1 22.5 241 515-843 21-267 (289)
2 PLN00181 protein SPA1-RELATED; 98.2 0.00029 6.3E-09 79.0 24.0 277 513-862 493-791 (793)
3 cd00200 WD40 WD40 domain, foun 98.1 0.00038 8.2E-09 60.3 17.9 182 640-865 61-250 (289)
4 PTZ00421 coronin; Provisional 97.4 0.007 1.5E-07 66.6 17.4 206 639-897 134-361 (493)
5 PLN00181 protein SPA1-RELATED; 97.4 0.018 4E-07 65.0 20.7 266 523-865 456-739 (793)
6 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.33 7.2E-06 45.0 22.3 64 640-709 82-148 (300)
7 PTZ00420 coronin; Provisional 96.5 0.2 4.4E-06 56.9 19.0 174 651-865 52-249 (568)
8 PTZ00420 coronin; Provisional 96.0 0.029 6.3E-07 63.4 9.6 65 639-709 134-200 (568)
9 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.7 3.6E-05 40.4 19.1 63 640-708 40-105 (300)
10 KOG0278 Serine/threonine kinas 95.4 0.025 5.5E-07 60.3 5.8 60 645-710 158-217 (334)
11 PF13360 PQQ_2: PQQ-like domai 95.4 0.77 1.7E-05 42.7 14.6 174 653-867 3-194 (238)
12 PTZ00421 coronin; Provisional 95.3 0.29 6.2E-06 54.3 13.6 150 513-705 178-330 (493)
13 KOG0266 WD40 repeat-containing 95.1 0.14 3E-06 55.1 10.2 191 467-714 222-417 (456)
14 KOG0647 mRNA export protein (c 94.9 0.36 7.9E-06 52.6 12.5 219 586-861 47-277 (347)
15 KOG0274 Cdc4 and related F-box 94.4 1.3 2.8E-05 50.2 15.9 261 518-867 221-484 (537)
16 KOG0266 WD40 repeat-containing 93.1 1.8 3.9E-05 46.9 13.7 154 509-712 209-370 (456)
17 PRK11028 6-phosphogluconolacto 92.7 5.9 0.00013 39.7 15.7 70 636-707 233-305 (330)
18 KOG0274 Cdc4 and related F-box 91.9 1.6 3.4E-05 49.6 11.7 150 641-833 260-416 (537)
19 KOG0288 WD40 repeat protein Ti 91.0 1.5 3.3E-05 49.4 10.2 158 646-847 276-442 (459)
20 KOG1036 Mitotic spindle checkp 90.3 1.1 2.4E-05 48.8 8.3 142 646-818 68-220 (323)
21 PF03178 CPSF_A: CPSF A subuni 89.8 6.7 0.00014 39.8 13.0 186 652-867 61-269 (321)
22 KOG0272 U4/U6 small nuclear ri 89.8 1.8 3.9E-05 48.9 9.6 220 514-805 230-455 (459)
23 TIGR02658 TTQ_MADH_Hv methylam 89.5 21 0.00047 39.0 17.1 258 589-868 15-334 (352)
24 TIGR03300 assembly_YfgL outer 89.1 29 0.00063 35.6 23.2 141 515-705 65-207 (377)
25 COG2319 FOG: WD40 repeat [Gene 88.7 18 0.00039 32.7 13.4 85 635-726 203-290 (466)
26 PRK11028 6-phosphogluconolacto 87.9 32 0.00069 34.6 16.3 182 646-864 5-205 (330)
27 KOG0281 Beta-TrCP (transducin 86.8 0.73 1.6E-05 51.3 4.3 167 483-707 218-389 (499)
28 KOG0310 Conserved WD40 repeat- 85.5 8.8 0.00019 44.0 11.8 138 643-803 166-304 (487)
29 KOG0295 WD40 repeat-containing 85.4 11 0.00024 42.3 12.3 196 513-745 203-402 (406)
30 KOG0279 G protein beta subunit 85.4 2.2 4.8E-05 46.3 6.9 62 640-707 202-263 (315)
31 PF02239 Cytochrom_D1: Cytochr 85.1 12 0.00026 40.2 12.2 147 650-825 55-209 (369)
32 KOG0270 WD40 repeat-containing 84.9 21 0.00045 40.9 14.2 215 405-665 51-278 (463)
33 COG2319 FOG: WD40 repeat [Gene 84.7 30 0.00066 31.3 16.2 81 643-732 254-339 (466)
34 KOG0315 G-protein beta subunit 84.6 6.4 0.00014 42.7 9.7 172 652-852 60-250 (311)
35 PF13360 PQQ_2: PQQ-like domai 84.1 23 0.0005 33.0 12.1 156 511-707 72-231 (238)
36 KOG0263 Transcription initiati 82.2 2.9 6.3E-05 49.4 6.6 175 511-709 459-652 (707)
37 PRK11138 outer membrane biogen 82.2 70 0.0015 33.6 20.9 45 650-696 167-212 (394)
38 PF08662 eIF2A: Eukaryotic tra 82.1 2.6 5.7E-05 40.9 5.3 62 638-706 108-179 (194)
39 KOG0273 Beta-transducin family 81.7 7.2 0.00016 44.8 9.2 89 638-729 367-461 (524)
40 PF08662 eIF2A: Eukaryotic tra 80.9 3 6.4E-05 40.5 5.3 58 641-706 70-133 (194)
41 KOG0318 WD40 repeat stress pro 80.3 14 0.00031 43.1 11.0 240 523-802 79-344 (603)
42 KOG0273 Beta-transducin family 74.7 3 6.4E-05 47.8 3.7 175 514-705 287-481 (524)
43 KOG0315 G-protein beta subunit 74.4 8.9 0.00019 41.7 6.9 214 642-892 9-229 (311)
44 KOG0286 G-protein beta subunit 74.4 56 0.0012 36.4 12.8 157 516-729 157-324 (343)
45 KOG1188 WD40 repeat protein [G 74.2 4.6 9.9E-05 44.9 4.8 118 642-793 83-214 (376)
46 KOG0265 U5 snRNP-specific prot 73.9 3.7 7.9E-05 45.1 4.0 59 642-705 144-203 (338)
47 KOG0308 Conserved WD40 repeat- 72.9 13 0.00029 44.1 8.3 149 645-830 88-255 (735)
48 KOG0643 Translation initiation 71.3 13 0.00028 40.8 7.3 73 646-724 67-151 (327)
49 KOG0319 WD40-repeat-containing 71.3 10 0.00022 45.3 7.1 91 637-734 509-603 (775)
50 TIGR03300 assembly_YfgL outer 66.0 1.2E+02 0.0026 31.3 12.6 66 788-865 143-209 (377)
51 PF00780 CNH: CNH domain; Int 66.0 1.4E+02 0.003 29.3 12.8 73 640-720 102-179 (275)
52 PF00780 CNH: CNH domain; Int 65.0 1.4E+02 0.0031 29.2 13.3 174 654-861 17-214 (275)
53 KOG0277 Peroxisomal targeting 64.8 28 0.0006 38.1 8.1 71 640-716 157-230 (311)
54 KOG0772 Uncharacterized conser 63.9 60 0.0013 38.3 11.0 190 646-865 284-489 (641)
55 KOG0263 Transcription initiati 63.1 14 0.0003 44.2 5.9 115 570-709 485-610 (707)
56 KOG0643 Translation initiation 62.7 40 0.00087 37.2 8.9 152 635-824 15-184 (327)
57 TIGR02604 Piru_Ver_Nterm putat 58.5 58 0.0013 34.4 9.1 28 828-855 115-142 (367)
58 KOG0271 Notchless-like WD40 re 57.7 11 0.00025 42.7 4.0 65 636-707 373-440 (480)
59 COG1136 SalX ABC-type antimicr 57.3 2.9 6.3E-05 43.3 -0.6 32 732-771 140-171 (226)
60 KOG1036 Mitotic spindle checkp 57.0 1.1E+02 0.0024 34.1 11.0 160 515-728 25-185 (323)
61 KOG1273 WD40 repeat protein [G 54.8 20 0.00044 40.1 5.2 58 635-698 71-128 (405)
62 TIGR03075 PQQ_enz_alc_DH PQQ-d 54.4 19 0.00041 40.6 5.0 46 648-697 477-522 (527)
63 KOG0267 Microtubule severing p 53.7 28 0.00061 42.0 6.4 139 568-746 124-293 (825)
64 PF10282 Lactonase: Lactonase, 52.3 1.8E+02 0.0039 30.4 11.3 196 639-862 95-320 (345)
65 PRK01742 tolB translocation pr 50.8 3.5E+02 0.0077 29.2 14.9 66 638-711 299-366 (429)
66 KOG4649 PQQ (pyrrolo-quinoline 48.5 2E+02 0.0043 32.2 11.2 199 553-759 84-330 (354)
67 TIGR02241 conserved hypothetic 48.1 34 0.00075 32.5 5.0 51 631-683 65-116 (140)
68 PF10282 Lactonase: Lactonase, 47.8 3.5E+02 0.0076 28.3 14.4 181 651-864 11-222 (345)
69 PF00400 WD40: WD domain, G-be 46.6 37 0.0008 24.0 3.9 35 664-704 2-39 (39)
70 KOG0269 WD40 repeat-containing 46.5 51 0.0011 40.2 7.0 105 643-770 189-299 (839)
71 KOG0316 Conserved WD40 repeat- 46.3 56 0.0012 35.7 6.7 125 649-802 77-207 (307)
72 PF09826 Beta_propel: Beta pro 45.2 1.2E+02 0.0027 34.7 9.6 190 648-863 93-311 (521)
73 PF04053 Coatomer_WDAD: Coatom 44.0 99 0.0022 34.8 8.5 120 567-706 43-173 (443)
74 TIGR02800 propeller_TolB tol-p 44.0 3.9E+02 0.0084 27.7 14.6 64 642-711 201-271 (417)
75 KOG0647 mRNA export protein (c 43.9 89 0.0019 35.0 7.9 170 522-743 47-222 (347)
76 KOG0646 WD40 repeat protein [G 43.3 82 0.0018 36.5 7.7 130 750-905 90-225 (476)
77 TIGR02658 TTQ_MADH_Hv methylam 43.3 74 0.0016 35.0 7.2 53 652-711 26-90 (352)
78 KOG0270 WD40 repeat-containing 42.8 32 0.0007 39.5 4.5 72 689-780 256-330 (463)
79 PF12234 Rav1p_C: RAVE protein 42.3 86 0.0019 37.2 8.0 118 754-896 68-192 (631)
80 COG1120 FepC ABC-type cobalami 40.8 6.4 0.00014 41.5 -1.1 66 733-798 137-223 (258)
81 PF06841 Phage_T4_gp19: T4-lik 40.7 1.5E+02 0.0032 26.9 7.6 38 637-675 68-105 (134)
82 COG1116 TauB ABC-type nitrate/ 40.1 7.1 0.00015 41.4 -0.9 17 732-748 128-144 (248)
83 cd00216 PQQ_DH Dehydrogenases 39.7 89 0.0019 34.5 7.2 71 648-727 411-487 (488)
84 KOG0291 WD40-repeat-containing 39.1 1.1E+02 0.0024 37.6 8.2 60 642-707 319-381 (893)
85 PF03474 DMA: DMRTA motif; In 39.0 12 0.00027 30.4 0.5 12 355-366 5-16 (39)
86 COG4608 AppF ABC-type oligopep 38.9 7.7 0.00017 41.5 -0.9 58 726-783 101-172 (268)
87 KOG0319 WD40-repeat-containing 38.1 56 0.0012 39.5 5.7 68 638-710 113-183 (775)
88 PRK15326 type III secretion sy 37.4 37 0.00079 31.2 3.2 46 255-302 8-53 (80)
89 KOG0264 Nucleosome remodeling 36.0 7.6E+02 0.016 28.8 14.2 207 638-871 132-354 (422)
90 KOG2055 WD40 repeat protein [G 36.0 84 0.0018 36.6 6.4 85 644-735 359-449 (514)
91 KOG1407 WD40 repeat protein [F 35.8 50 0.0011 36.3 4.5 68 631-706 67-136 (313)
92 PF11618 DUF3250: Protein of u 35.0 17 0.00036 33.9 0.7 21 584-604 2-22 (107)
93 KOG4378 Nuclear protein COP1 [ 34.8 97 0.0021 36.7 6.7 80 634-714 168-287 (673)
94 PF03022 MRJP: Major royal jel 33.7 72 0.0016 33.4 5.1 60 810-869 34-101 (287)
95 PF08076 TetM_leader: Tetracyc 33.2 17 0.00037 28.1 0.4 13 579-591 12-24 (28)
96 KOG0310 Conserved WD40 repeat- 32.9 56 0.0012 37.9 4.5 46 648-699 255-300 (487)
97 KOG0289 mRNA splicing factor [ 32.8 86 0.0019 36.4 5.8 62 644-709 360-422 (506)
98 PRK04792 tolB translocation pr 32.8 7.1E+02 0.015 27.4 16.1 66 639-711 314-387 (448)
99 COG3839 MalK ABC-type sugar tr 32.2 12 0.00026 40.8 -0.7 35 732-766 131-166 (338)
100 TIGR02800 propeller_TolB tol-p 32.1 2.9E+02 0.0062 28.6 9.0 63 640-708 287-356 (417)
101 KOG0300 WD40 repeat-containing 32.1 1.9E+02 0.0042 32.9 8.2 157 498-729 268-428 (481)
102 COG3840 ThiQ ABC-type thiamine 31.7 14 0.00029 39.1 -0.4 17 732-748 127-143 (231)
103 COG1124 DppF ABC-type dipeptid 31.5 13 0.00028 39.7 -0.6 27 733-765 140-166 (252)
104 PRK14751 tetracycline resistan 31.3 20 0.00044 27.5 0.6 14 578-591 11-24 (28)
105 KOG0639 Transducin-like enhanc 31.2 38 0.00082 39.9 2.9 122 651-796 438-569 (705)
106 COG0444 DppD ABC-type dipeptid 31.1 14 0.0003 40.4 -0.5 52 734-785 153-218 (316)
107 KOG4714 Nucleoporin [Nuclear s 30.5 1.2E+02 0.0026 33.6 6.2 85 645-735 194-311 (319)
108 KOG2110 Uncharacterized conser 30.2 1.5E+02 0.0032 33.8 7.0 186 653-861 68-326 (391)
109 PRK03629 tolB translocation pr 30.0 2.9E+02 0.0062 30.0 9.0 67 639-712 295-369 (429)
110 PF01011 PQQ: PQQ enzyme repea 29.9 85 0.0018 23.6 3.7 26 650-675 7-32 (38)
111 PF03178 CPSF_A: CPSF A subuni 29.8 5.4E+02 0.012 26.4 10.5 114 653-793 107-227 (321)
112 COG5426 Uncharacterized membra 29.4 17 0.00037 38.5 -0.2 13 580-592 229-241 (254)
113 KOG0318 WD40 repeat stress pro 29.0 1.3E+02 0.0028 35.8 6.5 80 646-729 250-329 (603)
114 COG5345 Uncharacterized protei 28.3 22 0.00048 39.2 0.5 29 258-286 226-254 (358)
115 KOG0282 mRNA splicing factor [ 27.9 1E+02 0.0022 35.9 5.5 100 640-773 268-378 (503)
116 KOG1538 Uncharacterized conser 27.7 55 0.0012 39.8 3.4 45 512-557 141-185 (1081)
117 smart00502 BBC B-Box C-termina 27.1 70 0.0015 27.6 3.2 49 254-302 75-123 (127)
118 KOG0286 G-protein beta subunit 27.0 49 0.0011 36.8 2.7 70 511-593 237-306 (343)
119 KOG0285 Pleiotropic regulator 27.0 4.3E+02 0.0094 30.6 9.8 186 699-904 174-425 (460)
120 COG1121 ZnuC ABC-type Mn/Zn tr 26.7 18 0.00038 38.4 -0.6 34 733-766 138-172 (254)
121 COG1135 AbcC ABC-type metal io 26.0 20 0.00044 39.7 -0.4 93 728-838 135-236 (339)
122 COG4604 CeuD ABC-type enteroch 25.6 22 0.00048 38.0 -0.1 56 733-789 134-204 (252)
123 cd01205 WASP WASP-type EVH1 do 25.3 1.1E+02 0.0024 29.1 4.3 51 631-684 19-71 (105)
124 PLN00165 hypothetical protein; 25.2 7.9 0.00017 35.9 -3.0 22 570-591 8-32 (88)
125 PF02239 Cytochrom_D1: Cytochr 24.8 3.8E+02 0.0083 29.1 8.8 70 643-718 6-76 (369)
126 COG1125 OpuBA ABC-type proline 24.7 23 0.00049 38.9 -0.3 16 733-748 134-149 (309)
127 KOG2185 Predicted RNA-processi 24.6 77 0.0017 36.6 3.7 57 251-309 405-462 (486)
128 KOG0291 WD40-repeat-containing 24.5 7E+02 0.015 31.2 11.4 210 506-776 395-619 (893)
129 KOG1408 WD40 repeat protein [F 24.2 88 0.0019 38.4 4.2 97 646-747 339-457 (1080)
130 KOG0279 G protein beta subunit 23.1 5.1E+02 0.011 29.1 9.3 140 513-705 159-312 (315)
131 KOG0307 Vesicle coat complex C 23.0 79 0.0017 39.6 3.6 58 637-704 169-238 (1049)
132 cd00216 PQQ_DH Dehydrogenases 22.8 1.1E+03 0.024 26.3 20.7 152 647-856 305-459 (488)
133 KOG4328 WD40 protein [Function 22.7 1.4E+02 0.0029 35.0 5.2 146 515-706 247-399 (498)
134 COG4525 TauB ABC-type taurine 22.4 25 0.00055 37.6 -0.4 16 733-748 131-146 (259)
135 COG4172 ABC-type uncharacteriz 22.3 27 0.00058 40.4 -0.3 187 585-802 29-246 (534)
136 KOG0290 Conserved WD40 repeat- 22.3 4.2E+02 0.0091 30.0 8.5 124 642-786 162-293 (364)
137 PRK04922 tolB translocation pr 22.3 6.8E+02 0.015 27.1 10.0 68 639-712 300-374 (433)
138 COG1123 ATPase components of v 22.2 26 0.00057 40.7 -0.4 146 585-771 310-467 (539)
139 smart00564 PQQ beta-propeller 22.1 1.2E+02 0.0025 21.2 3.0 21 648-668 11-31 (33)
140 KOG0321 WD40 repeat-containing 22.0 1.5E+02 0.0033 35.8 5.5 79 644-728 231-321 (720)
141 COG3842 PotA ABC-type spermidi 21.8 23 0.00049 39.1 -0.9 96 733-852 135-245 (352)
142 PRK02889 tolB translocation pr 21.4 7.3E+02 0.016 26.9 10.1 69 639-713 292-367 (427)
143 KOG0302 Ribosome Assembly prot 21.3 1.1E+02 0.0023 35.3 4.0 84 637-729 310-417 (440)
144 KOG1446 Histone H3 (Lys4) meth 20.5 1.3E+03 0.027 26.2 14.9 273 511-870 22-308 (311)
145 KOG0646 WD40 repeat protein [G 20.3 1.1E+02 0.0023 35.6 3.8 71 631-707 27-112 (476)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.55 E-value=6.3e-05 Score=65.10 Aligned_cols=241 Identities=20% Similarity=0.333 Sum_probs=134.1
Q ss_pred CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc-c
Q 002470 515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK-D 593 (918)
Q Consensus 515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk-~ 593 (918)
|.-++.+..||.+..||+.+.+....+..+. ..++.=+| .| || +++++++. +....-||..+. .
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~---~~--~~---~~l~~~~~----~~~i~i~~~~~~~~ 85 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA---SA--DG---TYLASGSS----DKTIRLWDLETGEC 85 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE---CC--CC---CEEEEEcC----CCeEEEEEcCcccc
Confidence 5667777889999999998776444443322 12222222 22 22 77777765 333455665542 1
Q ss_pred eeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-ec
Q 002470 594 VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQ 672 (918)
Q Consensus 594 v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vq 672 (918)
++.| ... .....++ . |. |.+.+|+++ +....|.+||++.++.+.... -.
T Consensus 86 ~~~~-----------------~~~----~~~i~~~------~-~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 135 (289)
T cd00200 86 VRTL-----------------TGH----TSYVSSV------A-FS-PDGRILSSS-SRDKTIKVWDVETGKCLTTLRGHT 135 (289)
T ss_pred eEEE-----------------ecc----CCcEEEE------E-Ec-CCCCEEEEe-cCCCeEEEEECCCcEEEEEeccCC
Confidence 1111 100 0001111 1 22 226666654 467889999999999988887 34
Q ss_pred cceeeeccCCccceeccccEEEee--cceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccC
Q 002470 673 KPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEG 750 (918)
Q Consensus 673 kpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~Eg 750 (918)
.+|.+|.|+.- ++++++. ...|.+||+++..+.. .+......|.++...... ++
T Consensus 136 ~~i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~-------~~--------- 191 (289)
T cd00200 136 DWVNSVAFSPD------GTFVASSSQDGTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDG-------EK--------- 191 (289)
T ss_pred CcEEEEEEcCc------CCEEEEEcCCCcEEEEEccccccce--eEecCccccceEEECCCc-------CE---------
Confidence 57888877643 6666666 5689999998655433 333444467777765432 11
Q ss_pred CCceeec-CCceeeeeecCCcccccccccCC-CccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeec
Q 002470 751 NDGVFCT-PDSINILDFRHPAGIGLKIPKFG-VNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSL 828 (918)
Q Consensus 751 nDGvfcT-~dsiNvlDFR~PsGIGlKip~~g-~~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYsl 828 (918)
=++|+ +..|.++|++...=+. .+..+. .-..-.|+....+++++. ....|.-|.++.++++.++.
T Consensus 192 --l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~i~i~~~~~~~~~~~~~- 258 (289)
T cd00200 192 --LLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGS---------EDGTIRVWDLRTGECVQTLS- 258 (289)
T ss_pred --EEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEc---------CCCcEEEEEcCCceeEEEcc-
Confidence 12222 3467888887633222 221222 222334555444444443 12457788888888877765
Q ss_pred CCCCcccccccceee
Q 002470 829 PESNAHSYHSAITQV 843 (918)
Q Consensus 829 PesNah~h~saItQV 843 (918)
.|...|+.+
T Consensus 259 ------~~~~~i~~~ 267 (289)
T cd00200 259 ------GHTNSVTSL 267 (289)
T ss_pred ------ccCCcEEEE
Confidence 334456654
No 2
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.22 E-value=0.00029 Score=78.98 Aligned_cols=277 Identities=15% Similarity=0.240 Sum_probs=148.1
Q ss_pred ecCceEEeeecCCCcceeeccCccc--cceecCCCcc--CCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccc
Q 002470 513 SEGESVLLAHDDGSCSYYDITNCED--KAVYKPPTAV--SSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWD 588 (918)
Q Consensus 513 sEGE~vLLAHdDgsCSyyDiAN~Ee--KavYkpPs~v--s~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWD 588 (918)
..|.-++.+-.||++..||+..... +....|-..+ ...+..-||.- +.+.|+++++..+ -..=||
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~~las~~~Dg----~v~lWd 561 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS-------YIKSQVASSNFEG----VVQVWD 561 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEecc-------CCCCEEEEEeCCC----eEEEEE
Confidence 4567777888899999999754211 1111111111 23345566631 2357887776543 455677
Q ss_pred ccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEE
Q 002470 589 FYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQ 668 (918)
Q Consensus 589 fYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMk 668 (918)
..+.+.. ..+... .. ..-++. |..+.|.+|+ +++..+.|++||++.|..++.
T Consensus 562 ~~~~~~~----------------~~~~~H---~~-~V~~l~-------~~p~~~~~L~-Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 562 VARSQLV----------------TEMKEH---EK-RVWSID-------YSSADPTLLA-SGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred CCCCeEE----------------EEecCC---CC-CEEEEE-------EcCCCCCEEE-EEcCCCEEEEEECCCCcEEEE
Confidence 6543321 111111 00 011111 2222455555 456788999999999999999
Q ss_pred EeeccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccc
Q 002470 669 WEVQKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSA 746 (918)
Q Consensus 669 WevqkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSs 746 (918)
+....+|..+.|++| .|++++++.. +|.+||+..-. .++.++.--.+.|+++...+. . .-++.
T Consensus 614 ~~~~~~v~~v~~~~~-----~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~~~------~--~lvs~- 678 (793)
T PLN00181 614 IKTKANICCVQFPSE-----SGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFVDS------S--TLVSS- 678 (793)
T ss_pred EecCCCeEEEEEeCC-----CCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEeCC------C--EEEEE-
Confidence 998888888877654 4776666553 79999997532 234444444566777776421 0 11221
Q ss_pred cccCCCceeecCCceeeeeecCCc-cccc----ccccCCCcccee-ee-cCCeEEEeeeeeccccccCCcccceeceecc
Q 002470 747 EAEGNDGVFCTPDSINILDFRHPA-GIGL----KIPKFGVNAQSV-FS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLRK 819 (918)
Q Consensus 747 e~EgnDGvfcT~dsiNvlDFR~Ps-GIGl----Kip~~g~~~qSv-fs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk 819 (918)
+++..|.|.|++.+. ++.. .+..|...+.++ |+ .|.-+..|+.... |--|....
T Consensus 679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~----------v~iw~~~~ 739 (793)
T PLN00181 679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE----------VFVYHKAF 739 (793)
T ss_pred ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE----------EEEEECCC
Confidence 234579999998652 3321 233344333333 44 3444444544332 22233333
Q ss_pred ceeeeeeec------CCCCcccccccceee-e-cCCceeeeeeccc-eeeee
Q 002470 820 QRLMNTYSL------PESNAHSYHSAITQV-W-GNSNLVMGISGEG-LFVFD 862 (918)
Q Consensus 820 ~~Lv~tYsl------PesNah~h~saItQV-W-GnSn~Vm~~cG~G-LFvFd 862 (918)
+..+.+|.+ +.-..+.|-..|.+| | ++++.++++|..| +-++|
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 333333321 111223444567777 7 5566777777777 33443
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.14 E-value=0.00038 Score=60.34 Aligned_cols=182 Identities=17% Similarity=0.348 Sum_probs=110.7
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeecc-ceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeee
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSV 716 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV 716 (918)
|.|.+|+++ +..+.|.+||+++++.+..+.... +|..+.++.. ++++++.. -.|.+||+++.. .+..+
T Consensus 61 ~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~--~~~~~ 131 (289)
T cd00200 61 ADGTYLASG-SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVETGK--CLTTL 131 (289)
T ss_pred CCCCEEEEE-cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC------CCEEEEecCCCeEEEEECCCcE--EEEEe
Confidence 455666654 447899999999999998888665 7888877653 67777664 679999998543 34444
Q ss_pred ecCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCcccee-e-ecCCeEE
Q 002470 717 SSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSV-F-SRGDSIF 794 (918)
Q Consensus 717 ~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSv-f-srGDsVf 794 (918)
......|+++.+... .+.+.... .+..|.++|.+...-+. .+..+...+.++ | ..|..++
T Consensus 132 ~~~~~~i~~~~~~~~--------~~~l~~~~---------~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 132 RGHTDWVNSVAFSPD--------GTFVASSS---------QDGTIKLWDLRTGKCVA-TLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred ccCCCcEEEEEEcCc--------CCEEEEEc---------CCCcEEEEEccccccce-eEecCccccceEEECCCcCEEE
Confidence 434455777776553 12222111 14468888887543332 233444344433 3 3444677
Q ss_pred EeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceee-ecCCceeeeee--ccceeeeeccc
Q 002470 795 LGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQV-WGNSNLVMGIS--GEGLFVFDALS 865 (918)
Q Consensus 795 ~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQV-WGnSn~Vm~~c--G~GLFvFda~~ 865 (918)
+|+. ...|.-|.++.++++.++. .|...|+.+ |-..+.++.++ ..-+.+||...
T Consensus 194 ~~~~----------~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 194 SSSS----------DGTIKLWDLSTGKCLGTLR-------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EecC----------CCcEEEEECCCCceecchh-------hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 7765 2468889999988888774 122244443 44434444444 34467777654
No 4
>PTZ00421 coronin; Provisional
Probab=97.40 E-value=0.007 Score=66.59 Aligned_cols=206 Identities=18% Similarity=0.286 Sum_probs=112.5
Q ss_pred ccccc-eeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceee
Q 002470 639 KPCGP-LIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLL 714 (918)
Q Consensus 639 rPCGP-Ll~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~ll 714 (918)
-|.+. +|+ +++.-+.|++||++.|+.+...+. +.+|..++|+ ..|.++++... +|.|||+.+-. .+.
T Consensus 134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s------pdG~lLatgs~Dg~IrIwD~rsg~--~v~ 204 (493)
T PTZ00421 134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN------LDGSLLCTTSKDKKLNIIDPRDGT--IVS 204 (493)
T ss_pred CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE------CCCCEEEEecCCCEEEEEECCCCc--EEE
Confidence 46664 555 456788999999999999888763 5677777654 35777766553 79999998643 333
Q ss_pred eeecCCceeEEEEeecccccccCccceeeccccccCCCceeec------CCceeeeeecCCcccccccccCC---Cccce
Q 002470 715 SVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT------PDSINILDFRHPAGIGLKIPKFG---VNAQS 785 (918)
Q Consensus 715 sV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT------~dsiNvlDFR~PsGIGlKip~~g---~~~qS 785 (918)
++.. | .|+.-+|+.-.. .++-+|++ +..|.+.|.|...-.- .+-.++ .....
T Consensus 205 tl~~--------H--------~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 205 SVEA--------H--------ASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMASPY-STVDLDQSSALFIP 265 (493)
T ss_pred EEec--------C--------CCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCCCce-eEeccCCCCceEEE
Confidence 3321 1 111222222111 12233332 3469999999754211 111111 11112
Q ss_pred eee-cCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeeeeeccceeeeecc
Q 002470 786 VFS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDAL 864 (918)
Q Consensus 786 vfs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~ 864 (918)
.|+ .|..+|+|... ...|.-|.++.++++.+++......| -|+|=+==+..|..
T Consensus 266 ~~d~d~~~L~lggkg---------Dg~Iriwdl~~~~~~~~~~~~s~~~~----------------~g~~~~pk~~~dv~ 320 (493)
T PTZ00421 266 FFDEDTNLLYIGSKG---------EGNIRCFELMNERLTFCSSYSSVEPH----------------KGLCMMPKWSLDTR 320 (493)
T ss_pred EEcCCCCEEEEEEeC---------CCeEEEEEeeCCceEEEeeccCCCCC----------------cceEeccccccccc
Confidence 343 46667776421 24688899999998887654332222 23332223344444
Q ss_pred cccCCccccccccccccc-----ee---ecCCCCCCCCCcc
Q 002470 865 SNDGFQSFASDNSSIQKV-----RE---IIGPDDLFAPSFD 897 (918)
Q Consensus 865 ~~d~~q~~~~D~~~~~~v-----Re---viGpDDLy~PsFD 897 (918)
+-+-.+-|......++-| |. -+=.||||-||+-
T Consensus 321 ~~Ei~r~~~l~~~~i~pis~~vpRk~~~~~fq~DlyP~t~~ 361 (493)
T PTZ00421 321 KCEIARFYALTYHSLYTIQMLLPRKQADSELQVDVYPPTFA 361 (493)
T ss_pred ceeeeEEEEecCCeEEEEEEEeccCCCccccccccCCCCCC
Confidence 444444444433333222 11 2446899999875
No 5
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.37 E-value=0.018 Score=64.97 Aligned_cols=266 Identities=17% Similarity=0.294 Sum_probs=143.9
Q ss_pred cCCCcceeeccCccccceecCCCccCC--CCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc--ceeeEE
Q 002470 523 DDGSCSYYDITNCEDKAVYKPPTAVSS--SIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK--DVRAFH 598 (918)
Q Consensus 523 dDgsCSyyDiAN~EeKavYkpPs~vs~--n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk--~v~Afh 598 (918)
-+|-|.++++-+.+.++..+--....+ -++.-+|- ..|+|+++|+..++ ..=||+-+. +.+..|
T Consensus 456 ~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs--------~dg~~latgg~D~~----I~iwd~~~~~~~~~~~~ 523 (793)
T PLN00181 456 LEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD--------RDGEFFATAGVNKK----IKIFECESIIKDGRDIH 523 (793)
T ss_pred hhhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC--------CCCCEEEEEeCCCE----EEEEECCcccccccccc
Confidence 468899999998888777663332322 23333332 24689888776444 467875331 111111
Q ss_pred eecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee-ccceee
Q 002470 599 IEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLT 677 (918)
Q Consensus 599 ~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~ 677 (918)
.. +..+... . ....+ =|..+.+.+|| +++..+.|++||+..|..+..++- ..+|.+
T Consensus 524 ~~----------~~~~~~~----~-~v~~l-------~~~~~~~~~la-s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~ 580 (793)
T PLN00181 524 YP----------VVELASR----S-KLSGI-------CWNSYIKSQVA-SSNFEGVVQVWDVARSQLVTEMKEHEKRVWS 580 (793)
T ss_pred cc----------eEEeccc----C-ceeeE-------EeccCCCCEEE-EEeCCCeEEEEECCCCeEEEEecCCCCCEEE
Confidence 10 0001110 0 01111 24444566665 556789999999999999988854 578999
Q ss_pred eccCCccceeccccEEEeec-c-eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCcee
Q 002470 678 MDYSSPLQWRNRGKLVVAEA-E-TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVF 755 (918)
Q Consensus 678 M~YSSPlQWRnrgKvViAe~-e-~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvf 755 (918)
++|+.+ .|.+++++. + +|.+||+++- +.+.++.. ...|.++.....| |+-=+.
T Consensus 581 l~~~p~-----~~~~L~Sgs~Dg~v~iWd~~~~--~~~~~~~~-~~~v~~v~~~~~~-----------------g~~lat 635 (793)
T PLN00181 581 IDYSSA-----DPTLLASGSDDGSVKLWSINQG--VSIGTIKT-KANICCVQFPSES-----------------GRSLAF 635 (793)
T ss_pred EEEcCC-----CCCEEEEEcCCCEEEEEECCCC--cEEEEEec-CCCeEEEEEeCCC-----------------CCEEEE
Confidence 998753 355555443 3 7999999864 34444432 2345554442211 110112
Q ss_pred ec-CCceeeeeecCCcccccccccCCCcccee-eecCCeEEEeeeeeccccccCCcccceeceeccc------eeeeeee
Q 002470 756 CT-PDSINILDFRHPAGIGLKIPKFGVNAQSV-FSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQ------RLMNTYS 827 (918)
Q Consensus 756 cT-~dsiNvlDFR~PsGIGlKip~~g~~~qSv-fsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~------~Lv~tYs 827 (918)
++ +..|.+.|-|.+.-.-..+..|...+.+| |.+|..++.|+.. ..|.-|.+|++ +++.++.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D----------~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTD----------NTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECC----------CEEEEEeCCCCccccCCcceEEEc
Confidence 22 23689999987643223445566556555 7777776666543 34556777643 3333332
Q ss_pred cCCCCcccccccceee-ecCCceeeeeec--cceeeeeccc
Q 002470 828 LPESNAHSYHSAITQV-WGNSNLVMGISG--EGLFVFDALS 865 (918)
Q Consensus 828 lPesNah~h~saItQV-WGnSn~Vm~~cG--~GLFvFda~~ 865 (918)
.| ...|+.+ |-..+-++++++ .-++++|...
T Consensus 706 -----gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 706 -----GH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred -----CC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 22 2233333 332333444443 4577888643
No 6
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.94 E-value=0.33 Score=45.02 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=43.7
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc---eeeeeecCCCC
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE---TISLWDVNSLN 709 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e---~islWDVnSL~ 709 (918)
|-|-.|+.+++..+.|.+||++.+..+..-+....+.+ +.|-..|+++++..+ .+.+||.++..
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~------~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEG------MAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcce------EEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 56766666666667999999999988776655444444 455567777766554 46778987654
No 7
>PTZ00420 coronin; Provisional
Probab=96.46 E-value=0.2 Score=56.89 Aligned_cols=174 Identities=15% Similarity=0.335 Sum_probs=89.6
Q ss_pred ccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCc------ceeeeeecCCc
Q 002470 651 SQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNP------QTLLSVSSCGR 721 (918)
Q Consensus 651 ~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~p------q~llsV~~~Gk 721 (918)
...+|++|++-....++...- +.+|..++|+ |- .+.+++++. -+|.|||+.+-.. .++..+.-...
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafs-P~----~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFN-PC----FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEc-CC----CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 344555555433333433332 3577777774 31 244555444 3899999975321 12222222223
Q ss_pred eeEEEEeecccccccCccceeeccccccCCCceeec---CCceeeeeecCCcccccccccCCCcccee-ee-cCCeEEEe
Q 002470 722 KISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT---PDSINILDFRHPAGIGLKIPKFGVNAQSV-FS-RGDSIFLG 796 (918)
Q Consensus 722 ki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT---~dsiNvlDFR~PsGIGlKip~~g~~~qSv-fs-rGDsVf~G 796 (918)
+|.++..+.+ ...+++| +-.|.|.|.+...-+ ..+. ++..+.++ |+ .|..+..|
T Consensus 127 ~V~sVaf~P~-------------------g~~iLaSgS~DgtIrIWDl~tg~~~-~~i~-~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 127 KISIIDWNPM-------------------NYYIMCSSGFDSFVNIWDIENEKRA-FQIN-MPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred cEEEEEECCC-------------------CCeEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCcEEEEEECCCCCEEEEE
Confidence 3443333221 1124322 457899998865422 1222 23344444 44 34443333
Q ss_pred eeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeee-----cCCceeeeeeccc-----eeeeeccc
Q 002470 797 CCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVW-----GNSNLVMGISGEG-----LFVFDALS 865 (918)
Q Consensus 797 ~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVW-----GnSn~Vm~~cG~G-----LFvFda~~ 865 (918)
|. ...|.-|.+|.++++.++. +|...-....+| |+.+.++.++.-+ +.++|...
T Consensus 186 s~----------D~~IrIwD~Rsg~~i~tl~-----gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 186 CV----------GKHMHIIDPRKQEIASSFH-----IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred ec----------CCEEEEEECCCCcEEEEEe-----cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 31 1457889999999988763 343333345577 5666666554332 88888764
No 8
>PTZ00420 coronin; Provisional
Probab=96.03 E-value=0.029 Score=63.43 Aligned_cols=65 Identities=15% Similarity=0.352 Sum_probs=52.5
Q ss_pred ccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec--ceeeeeecCCCC
Q 002470 639 KPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLN 709 (918)
Q Consensus 639 rPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~ 709 (918)
-|+|..|+.+++.-++|++||++.|+.+..++...+|..+.| -..|+++++.. ..|.|||..+..
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slsw------spdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKW------NIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEE------CCCCCEEEEEecCCEEEEEECCCCc
Confidence 588998888888899999999999999988877777776655 45688887653 479999998743
No 9
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.77 E-value=1.7 Score=40.45 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=42.1
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceecccc-EEEee--cceeeeeecCCC
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGK-LVVAE--AETISLWDVNSL 708 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgK-vViAe--~e~islWDVnSL 708 (918)
|-|-.|+.+++....|.+||.+.|+.+..+.....+.. +.|-..|+ ++++. ...|.+||+.+.
T Consensus 40 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~------~~~~~~g~~l~~~~~~~~~l~~~d~~~~ 105 (300)
T TIGR03866 40 KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL------FALHPNGKILYIANEDDNLVTVIDIETR 105 (300)
T ss_pred CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE------EEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 55666666666778999999999998766543322233 34545565 55553 358999999763
No 10
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.41 E-value=0.025 Score=60.29 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=53.4
Q ss_pred eeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCc
Q 002470 645 IASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNP 710 (918)
Q Consensus 645 l~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~p 710 (918)
|+|+ +-.++|.+||+|.|-.|-.-++..||-.|+||.-= --|+||-.-+|.|||.+|+.+
T Consensus 158 iLSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-----~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 158 ILSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-----RILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred EEee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-----CEEEEecCceeEEeccccccc
Confidence 6776 88999999999999999999999999999999742 247899999999999999864
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.35 E-value=0.77 Score=42.66 Aligned_cols=174 Identities=20% Similarity=0.322 Sum_probs=96.2
Q ss_pred ceeEEEEccCCceEEEEeeccceeeeccCCcc--ceeccccEEEe-ecceeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470 653 RVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPL--QWRNRGKLVVA-EAETISLWDVNSLNPQTLLSVSSCGRKISALHVN 729 (918)
Q Consensus 653 ~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPl--QWRnrgKvViA-e~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~ 729 (918)
..|.+||.++|+.+.+=.+.. ....|+ .....|.|+++ +...|..||..+-+ .+.+..+.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~--~~W~~~~~~--------- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP-----GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK--VLWRFDLPG--------- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS-----SCSSEEETEEEETTEEEEEETTSEEEEEETTTSE--EEEEEECSS---------
T ss_pred CEEEEEECCCCCEEEEEECCC-----CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC--EEEEeeccc---------
Confidence 468999999999986655533 255555 55678888888 55566666655432 222222211
Q ss_pred cccccccCccceeeccccccCCCceee-cC-CceeeeeecCCccccccc------ccCC-CccceeeecCCeEEEeeeee
Q 002470 730 NTDAELGGGVRQRVSSAEAEGNDGVFC-TP-DSINILDFRHPAGIGLKI------PKFG-VNAQSVFSRGDSIFLGCCNV 800 (918)
Q Consensus 730 NtDAE~gGGVRQRvSSse~EgnDGvfc-T~-dsiNvlDFR~PsGIGlKi------p~~g-~~~qSvfsrGDsVf~G~t~~ 800 (918)
++.+ ...-..+.||+ +. ..|..|| ..+|-=+.- |..+ ....+....||.+|+++.
T Consensus 67 ----~~~~--------~~~~~~~~v~v~~~~~~l~~~d--~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 130 (238)
T PF13360_consen 67 ----PISG--------APVVDGGRVYVGTSDGSLYALD--AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-- 130 (238)
T ss_dssp ----CGGS--------GEEEETTEEEEEETTSEEEEEE--TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--
T ss_pred ----cccc--------eeeecccccccccceeeeEecc--cCCcceeeeeccccccccccccccCceEecCEEEEEec--
Confidence 1111 12223344443 33 3577887 333321111 1122 112223334999999987
Q ss_pred ccccccCCcccceeceeccceeeeeeecCCCC--ccc---ccccceeeecCCceeeeeeccc-eeeeeccccc
Q 002470 801 RSTGKKQPSSQVQQFSLRKQRLMNTYSLPESN--AHS---YHSAITQVWGNSNLVMGISGEG-LFVFDALSND 867 (918)
Q Consensus 801 ~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesN--ah~---h~saItQVWGnSn~Vm~~cG~G-LFvFda~~~d 867 (918)
...|..+.++.|+++-.|.++... .+. +....+-+..+ +.|....+-| ++.+|.....
T Consensus 131 --------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 131 --------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD-GRVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp --------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT-TEEEEECCTSSEEEEETTTTE
T ss_pred --------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC-CEEEEEcCCCeEEEEECCCCC
Confidence 456788999999999999886644 222 22233334433 3777777777 5777655443
No 12
>PTZ00421 coronin; Provisional
Probab=95.29 E-value=0.29 Score=54.31 Aligned_cols=150 Identities=9% Similarity=0.131 Sum_probs=88.0
Q ss_pred ecCceEEeeecCCCcceeeccCccccceecCCCccCCCCc-cceEEEecCCCCCCCccEEEEeccCCCCccccccccccc
Q 002470 513 SEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIW-RDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT 591 (918)
Q Consensus 513 sEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W-~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYs 591 (918)
..|.-++.+..|+++..||+.+.+.-..+....+. .. +.+|. | .+.++++++.....|....-||.-+
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~---~-----~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWA---K-----RKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEc---C-----CCCeEEEEecCCCCCCeEEEEeCCC
Confidence 35777778899999999999876544444333211 11 33453 1 2345555544444566677788522
Q ss_pred cceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee
Q 002470 592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV 671 (918)
Q Consensus 592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev 671 (918)
-. ..++.... .. .+.+.. =+|-|.|-+|++++.+.+.|++||+++|+.+..++.
T Consensus 247 ~~-~p~~~~~~------------d~--------~~~~~~-----~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 247 MA-SPYSTVDL------------DQ--------SSALFI-----PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CC-CceeEecc------------CC--------CCceEE-----EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 11 11111110 00 011111 167899999998888899999999999998887665
Q ss_pred c--cceeeeccCCccceeccccEEEeecceeeeeec
Q 002470 672 Q--KPVLTMDYSSPLQWRNRGKLVVAEAETISLWDV 705 (918)
Q Consensus 672 q--kpV~~M~YSSPlQWRnrgKvViAe~e~islWDV 705 (918)
. .|+-+|.+.. +-.+-|-+-|-..++-+
T Consensus 301 ~s~~~~~g~~~~p------k~~~dv~~~Ei~r~~~l 330 (493)
T PTZ00421 301 SSVEPHKGLCMMP------KWSLDTRKCEIARFYAL 330 (493)
T ss_pred cCCCCCcceEecc------cccccccceeeeEEEEe
Confidence 3 4555555443 33355666666666654
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.07 E-value=0.14 Score=55.11 Aligned_cols=191 Identities=21% Similarity=0.278 Sum_probs=109.5
Q ss_pred ccccccccccccccc-ceeee-ecccchhhhhhhhcccccccccceeeecCceEEeeecCCCcceeeccCccccceecCC
Q 002470 467 TSDERLDEFDDQENR-QAFVI-DEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPP 544 (918)
Q Consensus 467 ~adE~leeFDdQEN~-~~~~i-~EEtee~c~~ql~~iG~K~stgGWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpP 544 (918)
.-|-++.-||-.++. ..+++ +-+..- +.==|.-.|+-|+-+=+|++|.+||+-+.+-+..++.=
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v--------------~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYV--------------TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCce--------------EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 456677888884443 33333 222221 12226667788888889999999999997777766654
Q ss_pred CccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccc
Q 002470 545 TAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNA 624 (918)
Q Consensus 545 s~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~ 624 (918)
+.--. .|+. ...|+|+++||. |--.|=||.++...+ ++..- ... -|.
T Consensus 288 s~~is----~~~f-------~~d~~~l~s~s~----d~~i~vwd~~~~~~~--~~~~~------------~~~----~~~ 334 (456)
T KOG0266|consen 288 SDGIS----GLAF-------SPDGNLLVSASY----DGTIRVWDLETGSKL--CLKLL------------SGA----ENS 334 (456)
T ss_pred CCceE----EEEE-------CCCCCEEEEcCC----CccEEEEECCCCcee--eeecc------------cCC----CCC
Confidence 32111 1111 234789988854 666788999998865 11111 000 000
Q ss_pred cccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccc-eeeeccCCccceeccccEEEeecc--eee
Q 002470 625 FSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP-VLTMDYSSPLQWRNRGKLVVAEAE--TIS 701 (918)
Q Consensus 625 ~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp-V~~M~YSSPlQWRnrgKvViAe~e--~is 701 (918)
..-..+...|. |=. +-+++.-++|++||++.|..++.|....- +..+ -+|.- .--|+..+.+.| +|.
T Consensus 335 ~~~~~~~fsp~------~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 335 APVTSVQFSPN------GKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI--FSPTL-STGGKLIYSGSEDGSVY 404 (456)
T ss_pred CceeEEEECCC------CcE-EEEecCCCeEEEEEccCCcceeeecccCCcceeE--ecccc-cCCCCeEEEEeCCceEE
Confidence 00000111122 222 33456678999999999999999976543 2121 12222 334666666555 688
Q ss_pred eeecCCCCcceee
Q 002470 702 LWDVNSLNPQTLL 714 (918)
Q Consensus 702 lWDVnSL~pq~ll 714 (918)
+||..++..-..+
T Consensus 405 ~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 405 VWDSSSGGILQRL 417 (456)
T ss_pred EEeCCccchhhhh
Confidence 9999986654433
No 14
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.90 E-value=0.36 Score=52.57 Aligned_cols=219 Identities=18% Similarity=0.346 Sum_probs=143.7
Q ss_pred cccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCce
Q 002470 586 SWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQ 665 (918)
Q Consensus 586 SWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~ 665 (918)
||| -.||-+-++..+....+ ++--++. .++ --=|-+- |-. +-+++.-+.+|+|||.-| |
T Consensus 47 SWD---~tVR~wevq~~g~~~~k-a~~~~~~----------PvL----~v~Wsdd-gsk-Vf~g~~Dk~~k~wDL~S~-Q 105 (347)
T KOG0647|consen 47 SWD---GTVRIWEVQNSGQLVPK-AQQSHDG----------PVL----DVCWSDD-GSK-VFSGGCDKQAKLWDLASG-Q 105 (347)
T ss_pred ccC---CceEEEEEecCCcccch-hhhccCC----------CeE----EEEEccC-Cce-EEeeccCCceEEEEccCC-C
Confidence 788 58999999986544332 2111111 111 1112222 333 344566788999999999 7
Q ss_pred EEEEee-ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCcccee
Q 002470 666 IMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQR 742 (918)
Q Consensus 666 vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQR 742 (918)
+++-.. ..||-+|.+-.+.- -.+++++. -+|.+||.. .++++.++.+++ |+||+-|-+-=|-++
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R--~~~pv~t~~LPe-RvYa~Dv~~pm~vVa------ 172 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTR--SSNPVATLQLPE-RVYAADVLYPMAVVA------ 172 (347)
T ss_pred eeeeeecccceeEEEEecCCC----cceeEecccccceeecccC--CCCeeeeeeccc-eeeehhccCceeEEE------
Confidence 776554 35777776655543 23555553 689999998 577899999976 578877665444333
Q ss_pred eccccccCCCceeecCCceeeeeecCCcccccccccC-C--CccceeeecCCeEEEeeeeeccccccC-Ccccceeceec
Q 002470 743 VSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKF-G--VNAQSVFSRGDSIFLGCCNVRSTGKKQ-PSSQVQQFSLR 818 (918)
Q Consensus 743 vSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~-g--~~~qSvfsrGDsVf~G~t~~~~~~k~q-~~s~vqq~SlR 818 (918)
|....|=|+..++|.-+=+.|-.. - ...-++|.++|---||.+++|-.+.-- +..+.+.|++|
T Consensus 173 -------------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 173 -------------TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred -------------ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 333457778888887776655432 2 333468999999999999999866433 22448889998
Q ss_pred cce----eee-eeecCCCCcccccccceeeecCCceeeeeeccceeee
Q 002470 819 KQR----LMN-TYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVF 861 (918)
Q Consensus 819 k~~----Lv~-tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvF 861 (918)
=-| .-. +|+.-+-+-|+.|.- +.-|-|-|-|.|
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgt----------lvTaGsDGtf~F 277 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGT----------LVTAGSDGTFSF 277 (347)
T ss_pred EeccCCCCCCceEEecceEeecccce----------EEEecCCceEEE
Confidence 666 333 799999899998754 445566788877
No 15
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.39 E-value=1.3 Score=50.25 Aligned_cols=261 Identities=17% Similarity=0.235 Sum_probs=159.6
Q ss_pred EEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeE
Q 002470 518 VLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAF 597 (918)
Q Consensus 518 vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Af 597 (918)
+...=+|++..-||..|- +.+..++.+=.-. ||-+.-|- -+.+.|.+|---|. ==||.=+.++ .
T Consensus 221 ~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~----V~~l~~~~----~~~~lvsgS~D~t~----rvWd~~sg~C--~ 284 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNG--YLILTRLVGHFGG----VWGLAFPS----GGDKLVSGSTDKTE----RVWDCSTGEC--T 284 (537)
T ss_pred EEecCCCceeEEeecccc--eEEEeeccCCCCC----ceeEEEec----CCCEEEEEecCCcE----EeEecCCCcE--E
Confidence 334456666667777754 4455556665544 45455553 14566776644443 3477434333 3
Q ss_pred EeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-ecccee
Q 002470 598 HIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVL 676 (918)
Q Consensus 598 h~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~ 676 (918)
|+..+-.. ++.+..- +|.+.+++|.-.+|+||||..|--+---. .--||.
T Consensus 285 ~~l~gh~s---------------------tv~~~~~--------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 285 HSLQGHTS---------------------SVRCLTI--------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN 335 (537)
T ss_pred EEecCCCc---------------------eEEEEEc--------cCceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence 44443111 1111111 12333448899999999999998877666 888999
Q ss_pred eeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCce
Q 002470 677 TMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGV 754 (918)
Q Consensus 677 ~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGv 754 (918)
+|.+. +.++|++.. +|.+||+. .-+.|.+...---.|++|=+ ++. +++-|...
T Consensus 336 ~v~~~--------~~~lvsgs~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~--------~~~-~~~~Sgs~------ 390 (537)
T KOG0274|consen 336 CVQLD--------EPLLVSGSYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIV--------DSE-NRLLSGSL------ 390 (537)
T ss_pred EEEec--------CCEEEEEecCceEEEEEhh--hceeeeeecCCcceEEEEEe--------cCc-ceEEeeee------
Confidence 99987 455666543 69999999 66778887777778888832 222 45544333
Q ss_pred eecCCceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcc
Q 002470 755 FCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAH 834 (918)
Q Consensus 755 fcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah 834 (918)
+..|=+.|++.+..-=+-..-|..-++++--+ |...+.|..-. .|-+|.+--+..+-++.=|
T Consensus 391 ---D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~aD~---------~Ik~WD~~~~~~~~~~~~~----- 452 (537)
T KOG0274|consen 391 ---DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSSADG---------TIKLWDAEEGECLRTLEGR----- 452 (537)
T ss_pred ---ccceEeecCCchhhhhhhhcCCcccccccccc-cceeEeccccc---------cEEEeecccCceeeeeccC-----
Confidence 36788999988852222233344444443333 33444443322 6778888888998888776
Q ss_pred cccccceeeecCCceeeeeeccceeeeeccccc
Q 002470 835 SYHSAITQVWGNSNLVMGISGEGLFVFDALSND 867 (918)
Q Consensus 835 ~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d 867 (918)
|+.+|+=+=+..+.||.++=.|.+-+-.++..
T Consensus 453 -~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 453 -HVGGVSALALGKEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred -CcccEEEeecCcceEEEEecCCeeEEEecccC
Confidence 65666655444788999988887766655544
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.12 E-value=1.8 Score=46.87 Aligned_cols=154 Identities=22% Similarity=0.399 Sum_probs=95.3
Q ss_pred ceeeecCceEEeeecCCCcceeec-cCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccc
Q 002470 509 GWFVSEGESVLLAHDDGSCSYYDI-TNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSW 587 (918)
Q Consensus 509 GWFVsEGE~vLLAHdDgsCSyyDi-AN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSW 587 (918)
-=|-..|+.++=+=+|++...||+ .+.-.=-+.++ +..|--|=-+- ..|+.||.+|.-+
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~------p~g~~i~Sgs~D~--------- 268 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFS------PDGNLLVSGSDDG--------- 268 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-----CCCceEEEEec------CCCCEEEEecCCC---------
Confidence 346678889999999999999999 33111112222 22222222221 1247777766443
Q ss_pred cccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCc---
Q 002470 588 DFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGE--- 664 (918)
Q Consensus 588 DfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe--- 664 (918)
.||.+.++.+ +.++.|+.... ..+.+ ++.|+|=+|+++ |.-++|++||+.-|.
T Consensus 269 -----tvriWd~~~~------~~~~~l~~hs~----~is~~--------~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 269 -----TVRIWDVRTG------ECVRKLKGHSD----GISGL--------AFSPDGNLLVSA-SYDGTIRVWDLETGSKLC 324 (456)
T ss_pred -----cEEEEeccCC------eEEEeeeccCC----ceEEE--------EECCCCCEEEEc-CCCccEEEEECCCCceee
Confidence 4666766654 33444444411 11111 788999999998 779999999999999
Q ss_pred -eEEEEeecc-ceeeeccCCccceeccccEEEeec-c-eeeeeecCCCCcce
Q 002470 665 -QIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA-E-TISLWDVNSLNPQT 712 (918)
Q Consensus 665 -~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~-e-~islWDVnSL~pq~ 712 (918)
..|.+.... ||....++ ..|+.++... . .+.+||+.+..--.
T Consensus 325 ~~~~~~~~~~~~~~~~~fs------p~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFS------PNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred eecccCCCCCCceeEEEEC------CCCcEEEEecCCCeEEEEEccCCccee
Confidence 355555555 57666555 4555555444 4 79999999775433
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.74 E-value=5.9 Score=39.70 Aligned_cols=70 Identities=14% Similarity=0.394 Sum_probs=45.9
Q ss_pred ceeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec---ceeeeeecCC
Q 002470 636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA---ETISLWDVNS 707 (918)
Q Consensus 636 WWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~---e~islWDVnS 707 (918)
+.+-|-|..|..+......|.+|||.......+..-.-|+- .+..-+++...||-+++-. -+|++|+++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 56778899888887888999999997544444443333332 2333455556786665433 3899998864
No 18
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.90 E-value=1.6 Score=49.59 Aligned_cols=150 Identities=18% Similarity=0.298 Sum_probs=100.0
Q ss_pred ccceeeecccccceeEEEEccCCceEEEEe-eccceeeeccCCccceeccccEEEe--ecceeeeeecCCCCcceeeeee
Q 002470 641 CGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVLTMDYSSPLQWRNRGKLVVA--EAETISLWDVNSLNPQTLLSVS 717 (918)
Q Consensus 641 CGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M~YSSPlQWRnrgKvViA--e~e~islWDVnSL~pq~llsV~ 717 (918)
||++|+| +|.-++++|||+.+|+.+---. -+.-|..|+-- ..+.+. --++|.+|||+ |++-|+...
T Consensus 260 ~~~~lvs-gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--------~~~~~sgs~D~tVkVW~v~--n~~~l~l~~ 328 (537)
T KOG0274|consen 260 GGDKLVS-GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--------PFLLVSGSRDNTVKVWDVT--NGACLNLLR 328 (537)
T ss_pred CCCEEEE-EecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--------CceEeeccCCceEEEEecc--CcceEEEec
Confidence 7888886 5778899999999999876544 67778777643 222333 56889999999 666666555
Q ss_pred cCCceeEEEEeecccccccCccceeeccccccCCCceeecCC-ceeeeeecCCcccc-cccccCCCccceeeecC-CeEE
Q 002470 718 SCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPD-SINILDFRHPAGIG-LKIPKFGVNAQSVFSRG-DSIF 794 (918)
Q Consensus 718 ~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~d-siNvlDFR~PsGIG-lKip~~g~~~qSvfsrG-DsVf 794 (918)
--+-.|+|+-.+ .|.=+.| |.| +|=|-|-+ +|== ..+-.|-.-|++++-.+ .-+|
T Consensus 329 ~h~~~V~~v~~~-~~~lvsg-------------------s~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~~~~~ 386 (537)
T KOG0274|consen 329 GHTGPVNCVQLD-EPLLVSG-------------------SYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSENRLL 386 (537)
T ss_pred cccccEEEEEec-CCEEEEE-------------------ecCceEEEEEhh--hceeeeeecCCcceEEEEEecCcceEE
Confidence 345556666544 3333322 222 35566665 2221 23344667888888788 8888
Q ss_pred EeeeeeccccccCCcccceeceeccc-eeeeeeecCCCCc
Q 002470 795 LGCCNVRSTGKKQPSSQVQQFSLRKQ-RLMNTYSLPESNA 833 (918)
Q Consensus 795 ~G~t~~~~~~k~q~~s~vqq~SlRk~-~Lv~tYslPesNa 833 (918)
.|.+. .-++.|+|+.+ +.+-||..+.+-.
T Consensus 387 Sgs~D----------~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 387 SGSLD----------TTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred eeeec----------cceEeecCCchhhhhhhhcCCcccc
Confidence 88876 34778899988 8888886655443
No 19
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.95 E-value=1.5 Score=49.40 Aligned_cols=158 Identities=25% Similarity=0.368 Sum_probs=99.6
Q ss_pred eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee--cceeeeeecCCCCcceeeeeecCCcee
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVNSLNPQTLLSVSSCGRKI 723 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVnSL~pq~llsV~~~Gkki 723 (918)
+-++|-++++|.|||+-++- .|-|+...|+--+--- +-.|+-+ -+.|.|||.-| +.+..+|+..| +|
T Consensus 276 vVsgs~DRtiK~WDl~k~~C------~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~gg-~v 344 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYC------SKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS--ADKTRSVPLGG-RV 344 (459)
T ss_pred eeeccccchhhhhhhhhhhe------eccccccccccceEec--ceeeeecccccceEEEeccC--CceeeEeecCc-ce
Confidence 34578899999999987543 3445544444322110 2223332 35699999876 56789999988 88
Q ss_pred EEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCC-----ccceeeecCCeE-EEee
Q 002470 724 SALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGV-----NAQSVFSRGDSI-FLGC 797 (918)
Q Consensus 724 ~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~-----~~qSvfsrGDsV-f~G~ 797 (918)
..|-++- +.++=+|+ .-+|-++|+|-|.- +|=.-+--.|. -.-.|||+|++. --|.
T Consensus 345 tSl~ls~-------~g~~lLss----------sRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 345 TSLDLSM-------DGLELLSS----------SRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred eeEeecc-------CCeEEeee----------cCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeecc
Confidence 8886642 22333333 23688999998863 22222222222 245688887763 3343
Q ss_pred eeeccccccCCcccceeceeccceeeeeeecCCCCccccccccee-eecCC
Q 002470 798 CNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQ-VWGNS 847 (918)
Q Consensus 798 t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQ-VWGnS 847 (918)
.+ ..|--|++-.|||....++|.+|+ +|+- .|-.+
T Consensus 407 ~d----------gsv~iW~v~tgKlE~~l~~s~s~~-----aI~s~~W~~s 442 (459)
T KOG0288|consen 407 AD----------GSVYIWSVFTGKLEKVLSLSTSNA-----AITSLSWNPS 442 (459)
T ss_pred CC----------CcEEEEEccCceEEEEeccCCCCc-----ceEEEEEcCC
Confidence 33 457789999999999999999988 5543 46543
No 20
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=1.1 Score=48.79 Aligned_cols=142 Identities=18% Similarity=0.304 Sum_probs=95.0
Q ss_pred eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec-ceeeeeecCCCCcceeeeeecCCceeE
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQTLLSVSSCGRKIS 724 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq~llsV~~~Gkki~ 724 (918)
+-+..-+..|+.||+--|+.-.-=---+||..|+|+ +-+|+||-++- ++|.|||.-- ++...+... +|||+
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~-----~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~-~kkVy 139 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS-----YEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQ-GKKVY 139 (323)
T ss_pred EEEeccCceEEEEEecCCcceeeccCCCceEEEEee-----ccCCeEEEcccCccEEEEeccc--ccccccccc-CceEE
Confidence 446677899999999887755444456899999998 56787766654 6899999874 444444444 66888
Q ss_pred EEEeecccccccCccceeeccccccCCCcee-ecCCceeeeeecCCc------ccccccccCCCccceeeecCCeEEEee
Q 002470 725 ALHVNNTDAELGGGVRQRVSSAEAEGNDGVF-CTPDSINILDFRHPA------GIGLKIPKFGVNAQSVFSRGDSIFLGC 797 (918)
Q Consensus 725 aLHV~NtDAE~gGGVRQRvSSse~EgnDGvf-cT~dsiNvlDFR~Ps------GIGlKip~~g~~~qSvfsrGDsVf~G~ 797 (918)
|+-|+ ||-=|. |.+..|++.|.|.=. -=++|+++--+ ..|.-|.--+.|+
T Consensus 140 ~~~v~--------------------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v---~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 140 CMDVS--------------------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV---ALVPNGEGYVVSS 196 (323)
T ss_pred EEecc--------------------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE---EEecCCCceEEEe
Confidence 87664 555567 777889999998621 11344443322 2466777788999
Q ss_pred eeecccccc---CCcccceeceec
Q 002470 798 CNVRSTGKK---QPSSQVQQFSLR 818 (918)
Q Consensus 798 t~~~~~~k~---q~~s~vqq~SlR 818 (918)
+++|-+.-- ++..|=..|..|
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE
Confidence 999875432 233444445444
No 21
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.84 E-value=6.7 Score=39.84 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=93.0
Q ss_pred cceeEEEEccCC-------ceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCce--
Q 002470 652 QRVVTVYDIRDG-------EQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRK-- 722 (918)
Q Consensus 652 q~~V~~yDIRDG-------e~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkk-- 722 (918)
++-+.+|+|.+. +.+-+.++..||.+|..- +|+||+|--..|.+|++.--+ .|+.++...-.
T Consensus 61 ~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-------~~~lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~ 131 (321)
T PF03178_consen 61 SGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-------NGRLVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFY 131 (321)
T ss_dssp -EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-------TTEEEEEETTEEEEEEEETTS--SEEEEEEE-BSSS
T ss_pred CcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-------CCEEEEeecCEEEEEEccCcc--cchhhheecceEE
Confidence 478999999996 677789999999999854 788999999999999987655 45555544333
Q ss_pred eEEEEeecccccccCccceeeccccccCCCceeec--CCceeeeeecCCcc----cccccccCCCccceeeecCCeEEEe
Q 002470 723 ISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT--PDSINILDFRHPAG----IGLKIPKFGVNAQSVFSRGDSIFLG 796 (918)
Q Consensus 723 i~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT--~dsiNvlDFR~PsG----IGlKip~~g~~~qSvfsrGDsVf~G 796 (918)
+..|.+. +| =+++. -+||.++-|+.-.- |+.-.......+-....++|.++.+
T Consensus 132 i~sl~~~--------------------~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 132 ITSLSVF--------------------KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEEE--------------------TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEecc--------------------cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 3333333 22 22222 46777777665111 2222223333333333377855555
Q ss_pred eeeeccccccCCcccceeceec-cceeeeeeecCCCCcccccccceeeecCC------ceeeeeeccceeeeec-cccc
Q 002470 797 CCNVRSTGKKQPSSQVQQFSLR-KQRLMNTYSLPESNAHSYHSAITQVWGNS------NLVMGISGEGLFVFDA-LSND 867 (918)
Q Consensus 797 ~t~~~~~~k~q~~s~vqq~SlR-k~~Lv~tYslPesNah~h~saItQVWGnS------n~Vm~~cG~GLFvFda-~~~d 867 (918)
-..+....-..+....+...-. +=..++.|.|++.-....+.++.+.=+.+ .++.|...=|++++=+ ..++
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~~ 269 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIPFLSEE 269 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE-E-HH
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEecCCHH
Confidence 4444432222221111111100 11233556666665555443333321122 2555555555666766 4433
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=89.83 E-value=1.8 Score=48.86 Aligned_cols=220 Identities=22% Similarity=0.291 Sum_probs=126.5
Q ss_pred cCceEEeeecCCCcceeeccCccccceecC-CCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc
Q 002470 514 EGESVLLAHDDGSCSYYDITNCEDKAVYKP-PTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK 592 (918)
Q Consensus 514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkp-Ps~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk 592 (918)
++..+.-|-.||+.-.|+.-|.+.=..... +..|+--.| =-||+|+++|| .|+-.==||.-|+
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf------------HPsG~~L~Tas----fD~tWRlWD~~tk 293 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF------------HPSGKFLGTAS----FDSTWRLWDLETK 293 (459)
T ss_pred CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeee------------cCCCceeeecc----cccchhhcccccc
Confidence 567788888999999999999653222211 111221111 13799999987 5776777888777
Q ss_pred ceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEe-e
Q 002470 593 DVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-V 671 (918)
Q Consensus 593 ~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-v 671 (918)
.- .|.++|-+ + + ...+. |-|=|-|++| ..--..=.|||+|.|.+||--+ -
T Consensus 294 ~E--lL~QEGHs---~----~-----------v~~ia--------f~~DGSL~~t-GGlD~~~RvWDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 294 SE--LLLQEGHS---K----G-----------VFSIA--------FQPDGSLAAT-GGLDSLGRVWDLRTGRCIMFLAGH 344 (459)
T ss_pred hh--hHhhcccc---c----c-----------cceeE--------ecCCCceeec-cCccchhheeecccCcEEEEeccc
Confidence 53 34555511 1 1 11111 4456776554 5556667899999999999886 4
Q ss_pred ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeecccccc
Q 002470 672 QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAE 749 (918)
Q Consensus 672 qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~E 749 (918)
.|||++|+||. .|-.+.++. -++.+||..=-.+ |.+++ -|.|=+- .|| -+..+
T Consensus 345 ~k~I~~V~fsP------NGy~lATgs~Dnt~kVWDLR~r~~--ly~ip--------AH~nlVS-----~Vk----~~p~~ 399 (459)
T KOG0272|consen 345 IKEILSVAFSP------NGYHLATGSSDNTCKVWDLRMRSE--LYTIP--------AHSNLVS-----QVK----YSPQE 399 (459)
T ss_pred ccceeeEeECC------CceEEeecCCCCcEEEeeeccccc--ceecc--------cccchhh-----heE----ecccC
Confidence 69999999874 566777654 4799999875443 44443 2443211 111 11122
Q ss_pred CCCceeecCC-ceeeeeecCCccccc-ccccCCCccceeeecCCeEEEeeeeeccccc
Q 002470 750 GNDGVFCTPD-SINILDFRHPAGIGL-KIPKFGVNAQSVFSRGDSIFLGCCNVRSTGK 805 (918)
Q Consensus 750 gnDGvfcT~d-siNvlDFR~PsGIGl-Kip~~g~~~qSvfsrGDsVf~G~t~~~~~~k 805 (918)
|.-=|=|.-| -+||.- .+++-=+ -+.-|...+-|+=--+|+=||-++.+--++|
T Consensus 400 g~fL~TasyD~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred CeEEEEcccCcceeeec--CCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 2222222222 345432 2222211 2455556666655556776777766655554
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.49 E-value=21 Score=38.96 Aligned_cols=258 Identities=18% Similarity=0.193 Sum_probs=145.7
Q ss_pred ccccceeeEEeecCCc----cccceeeccCCCCccccccccccccccccccceeccccceeeeccc---------cccee
Q 002470 589 FYTKDVRAFHIEGEGK----TTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAAS---------SQRVV 655 (918)
Q Consensus 589 fYsk~v~Afh~e~~s~----~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS---------~q~~V 655 (918)
.|--+...||+- +.. ..++.+|+-+|-- .|-+. + .-|=|-.|.-+++ ....|
T Consensus 15 v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G--~~P~~---~---------~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 15 VYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGG--FLPNP---V---------VASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred EEEECCcccccC-ceEEEEECCCCEEEEEEEcc--CCCce---e---------ECCCCCEEEEEeccccccccCCCCCEE
Confidence 555555566665 322 3556677755533 11111 1 2244556777777 78999
Q ss_pred EEEEccCCceEEEEeec-cc-eeeeccCCccceecccc-EEEee---cceeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470 656 TVYDIRDGEQIMQWEVQ-KP-VLTMDYSSPLQWRNRGK-LVVAE---AETISLWDVNSLNPQTLLSVSSCGRKISALHVN 729 (918)
Q Consensus 656 ~~yDIRDGe~vMkWevq-kp-V~~M~YSSPlQWRnrgK-vViAe---~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~ 729 (918)
.|||+..++.+-+.++- +| .+.+.|..=++.-.-|| ++|+- .-++++.|+.+-.--.-..|+- ++.||+--=.
T Consensus 80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~ 158 (352)
T TIGR02658 80 EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND 158 (352)
T ss_pred EEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC
Confidence 99999999999887762 22 13444555556667888 55565 3489999999876554444432 3444442000
Q ss_pred cccccccCcccee----------eccccc--c--------------CCCceeecC-CceeeeeecCC-cccccccccC--
Q 002470 730 NTDAELGGGVRQR----------VSSAEA--E--------------GNDGVFCTP-DSINILDFRHP-AGIGLKIPKF-- 779 (918)
Q Consensus 730 NtDAE~gGGVRQR----------vSSse~--E--------------gnDGvfcT~-dsiNvlDFR~P-sGIGlKip~~-- 779 (918)
+--+-|+=|-.+. +.+... - ++.-+|.|. -.|.++||.-. +.....+..+
T Consensus 159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 0001122222222 222222 0 111233333 35778886332 2222222221
Q ss_pred ---------CC-ccceeeecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCc-
Q 002470 780 ---------GV-NAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSN- 848 (918)
Q Consensus 780 ---------g~-~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn- 848 (918)
|+ ..-.+=.+|.-+|+......--.-+.+...|.-+.++.++.+.+..+-. .+|+.++|| .-.
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~---Dgkp 312 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQ---DAKP 312 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECC---CCCe
Confidence 21 1122333788999966522222335576789999999999999988754 677777776 344
Q ss_pred eeeeeec-cc-eeeeecccccC
Q 002470 849 LVMGISG-EG-LFVFDALSNDG 868 (918)
Q Consensus 849 ~Vm~~cG-~G-LFvFda~~~d~ 868 (918)
+++.+|+ .| +.|||+.....
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeE
Confidence 7788885 35 99999876543
No 24
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.13 E-value=29 Score=35.63 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=73.9
Q ss_pred CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccce
Q 002470 515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDV 594 (918)
Q Consensus 515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v 594 (918)
|+.|.++..||...-+|.++-+..-.+.-+..+. .+|-.| +..|++++.. -.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~----------~~p~v~---~~~v~v~~~~--------------g~l 117 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS----------GGVGAD---GGLVFVGTEK--------------GEV 117 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc----------cceEEc---CCEEEEEcCC--------------CEE
Confidence 5677778888888889988887766665555332 234344 2334433321 135
Q ss_pred eeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccc
Q 002470 595 RAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP 674 (918)
Q Consensus 595 ~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp 674 (918)
.||..+.|..-=.+ +++.. ..+...... |-+++. +....|.+||+++|+.+-+.+.+.|
T Consensus 118 ~ald~~tG~~~W~~----~~~~~------~~~~p~v~~---------~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 118 IALDAEDGKELWRA----KLSSE------VLSPPLVAN---------GLVVVR--TNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred EEEECCCCcEeeee----ccCce------eecCCEEEC---------CEEEEE--CCCCeEEEEEcCCCceeeEEccCCC
Confidence 55555444221100 11110 000000000 223332 3456799999999999877777777
Q ss_pred eeee-ccCCccceeccccEEEeec-ceeeeeec
Q 002470 675 VLTM-DYSSPLQWRNRGKLVVAEA-ETISLWDV 705 (918)
Q Consensus 675 V~~M-~YSSPlQWRnrgKvViAe~-e~islWDV 705 (918)
.+.+ .+++|+-.. |.|++.-. ..+.-+|.
T Consensus 177 ~~~~~~~~sp~~~~--~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 177 ALTLRGSASPVIAD--GGVLVGFAGGKLVALDL 207 (377)
T ss_pred ceeecCCCCCEEEC--CEEEEECCCCEEEEEEc
Confidence 6654 367787553 44444332 23444444
No 25
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=88.70 E-value=18 Score=32.70 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=51.6
Q ss_pred cceeccccceeeecccccceeEEEEccCCceEEE-EeeccceeeeccCCccceeccccEEE--eecceeeeeecCCCCcc
Q 002470 635 QWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQ-WEVQKPVLTMDYSSPLQWRNRGKLVV--AEAETISLWDVNSLNPQ 711 (918)
Q Consensus 635 qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMk-WevqkpV~~M~YSSPlQWRnrgKvVi--Ae~e~islWDVnSL~pq 711 (918)
.+.|.|.|+.++.+++....|.+||++.|+.+.. +.-..... +. .|...|++++ ..-.+|.+||..+...
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 275 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-----SFSPDGSLLASGSSDGTIRLWDLRSSSS- 275 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-----eECCCCCEEEEecCCCcEEEeeecCCCc-
Confidence 3444499995555588888999999998988873 33322221 21 3434444443 3456799999998887
Q ss_pred eeeeeecCCceeEEE
Q 002470 712 TLLSVSSCGRKISAL 726 (918)
Q Consensus 712 ~llsV~~~Gkki~aL 726 (918)
.+.........|.++
T Consensus 276 ~~~~~~~~~~~v~~~ 290 (466)
T COG2319 276 LLRTLSGHSSSVLSV 290 (466)
T ss_pred EEEEEecCCccEEEE
Confidence 222222224555555
No 26
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.93 E-value=32 Score=34.61 Aligned_cols=182 Identities=10% Similarity=0.142 Sum_probs=86.3
Q ss_pred eecccccceeEEEEccC-CceEEEEeeccceeeeccCCccceeccccEE-Eee--cceeeeeecCCC-CcceeeeeecCC
Q 002470 646 ASAASSQRVVTVYDIRD-GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLV-VAE--AETISLWDVNSL-NPQTLLSVSSCG 720 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRD-Ge~vMkWevqkpV~~M~YSSPlQWRnrgKvV-iAe--~e~islWDVnSL-~pq~llsV~~~G 720 (918)
..++...+.|++||+.+ |+ +++-+-+-.....++|.+-..|+.+ ++. ...|..||++.- .-+.+-.+...|
T Consensus 5 y~~~~~~~~I~~~~~~~~g~----l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGA----LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCc----eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC
Confidence 33445568899999974 53 2222222222344556666567754 442 356777888621 111111222211
Q ss_pred ceeEEEEeecccccccCccceeeccccccCCCceeec---CCceeeeeecCCcccccccc---cCCCccceeee-cCCeE
Q 002470 721 RKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT---PDSINILDFRHPAGIGLKIP---KFGVNAQSVFS-RGDSI 793 (918)
Q Consensus 721 kki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT---~dsiNvlDFR~PsGIGlKip---~~g~~~qSvfs-rGDsV 793 (918)
. . -|+. -+ . .+.-+|.+ ...|-|+|+.....+...+. ......+..|+ .|..+
T Consensus 81 ~-p--~~i~---------------~~-~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 81 S-P--THIS---------------TD-H-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL 140 (330)
T ss_pred C-c--eEEE---------------EC-C-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence 1 0 1110 00 0 00112222 24566777653222222221 11112333354 57788
Q ss_pred EEeeeeeccccccCCcccceeceecc-ceee----eeeecCCCCcccccccceeeecCCceeeeee--ccceeeeecc
Q 002470 794 FLGCCNVRSTGKKQPSSQVQQFSLRK-QRLM----NTYSLPESNAHSYHSAITQVWGNSNLVMGIS--GEGLFVFDAL 864 (918)
Q Consensus 794 f~G~t~~~~~~k~q~~s~vqq~SlRk-~~Lv----~tYslPesNah~h~saItQVWGnSn~Vm~~c--G~GLFvFda~ 864 (918)
|+.+... -.|--|.+.. +.|. .++.+|. ..++||.+++ .+..++..++ ..-+++||.-
T Consensus 141 ~v~~~~~---------~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 141 WVPCLKE---------DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EEeeCCC---------CEEEEEEECCCCcccccCCCceecCC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEe
Confidence 8766421 3566677765 3332 2344444 4678887664 5566766666 3566777753
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.81 E-value=0.73 Score=51.34 Aligned_cols=167 Identities=24% Similarity=0.340 Sum_probs=95.1
Q ss_pred eeeeecccchhhhhhhhcccccccccceeee--cCc-eEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEe
Q 002470 483 AFVIDEGIEDTCTYQLNEIGQRTSTGGWFVS--EGE-SVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIR 559 (918)
Q Consensus 483 ~~~i~EEtee~c~~ql~~iG~K~stgGWFVs--EGE-~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiR 559 (918)
.+-|=+-.+-.|.|.|.|- ||-= .| --+ -|+-+-.|++...||+.|.|--.+|.--... + --+|
T Consensus 218 TikiWD~n~~~c~~~L~GH-----tGSV-LCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea---V----Lhlr 284 (499)
T KOG0281|consen 218 TIKIWDKNSLECLKILTGH-----TGSV-LCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA---V----LHLR 284 (499)
T ss_pred ceEEeccccHHHHHhhhcC-----CCcE-EeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce---e----EEEE
Confidence 4445566677899988773 2211 11 112 3344567899999999999866666532210 0 0112
Q ss_pred cCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceec
Q 002470 560 AAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYK 639 (918)
Q Consensus 560 ApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYr 639 (918)
. +.-|.|+.|-- -..--||. ...+.-+-|.||. +- |-+.-.+.-.+.
T Consensus 285 f------~ng~mvtcSkD----rsiaVWdm----------~sps~it~rrVLv---GH----rAaVNvVdfd~k------ 331 (499)
T KOG0281|consen 285 F------SNGYMVTCSKD----RSIAVWDM----------ASPTDITLRRVLV---GH----RAAVNVVDFDDK------ 331 (499)
T ss_pred E------eCCEEEEecCC----ceeEEEec----------cCchHHHHHHHHh---hh----hhheeeeccccc------
Confidence 1 33467765532 22233443 2222123333332 22 212222222222
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec--ceeeeeecCC
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNS 707 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnS 707 (918)
++-+||+.+++++||+-.||-|---.-.+-=+| =||| |||+||.+. -+|.|||.+|
T Consensus 332 -----yIVsASgDRTikvW~~st~efvRtl~gHkRGIA-----ClQY--r~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 332 -----YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA-----CLQY--RDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred -----eEEEecCCceEEEEeccceeeehhhhcccccce-----ehhc--cCeEEEecCCCceEEEEeccc
Confidence 466789999999999999999866554443333 2566 588999886 5899999987
No 28
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.51 E-value=8.8 Score=43.99 Aligned_cols=138 Identities=18% Similarity=0.282 Sum_probs=104.0
Q ss_pred ceeeecccccceeEEEEccCC-ceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCc
Q 002470 643 PLIASAASSQRVVTVYDIRDG-EQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGR 721 (918)
Q Consensus 643 PLl~StaS~q~~V~~yDIRDG-e~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gk 721 (918)
|-|+-|.|-...|++||+|-- +.||...---||=.|-|-.+ -+-++-|+--.+.+||+-+= -|.|-+...--|
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps-----gs~iasAgGn~vkVWDl~~G-~qll~~~~~H~K 239 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS-----GSLIASAGGNSVKVWDLTTG-GQLLTSMFNHNK 239 (487)
T ss_pred CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC-----CCEEEEcCCCeEEEEEecCC-ceehhhhhcccc
Confidence 448889999999999999987 99999999999988877554 45788999999999998643 344555555689
Q ss_pred eeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeec
Q 002470 722 KISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVR 801 (918)
Q Consensus 722 ki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~ 801 (918)
.|.||-++- |- +|+=|.--.++==||-|.+.==|.-|+.|.+| + --.|+-.++.|++|-+++-
T Consensus 240 tVTcL~l~s-~~-------~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv-L--------siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 240 TVTCLRLAS-DS-------TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV-L--------SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred eEEEEEeec-CC-------ceEeecccccceEEEEccceEEEEeeecccce-e--------eEEecCCCceEEEecccce
Confidence 999998764 32 88877777677778887766555556666554 1 1246667889999999886
Q ss_pred cc
Q 002470 802 ST 803 (918)
Q Consensus 802 ~~ 803 (918)
..
T Consensus 303 v~ 304 (487)
T KOG0310|consen 303 VS 304 (487)
T ss_pred ee
Confidence 53
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.43 E-value=11 Score=42.30 Aligned_cols=196 Identities=18% Similarity=0.325 Sum_probs=122.2
Q ss_pred ecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEE-EecCCCCCCCccEEEEeccCCCCccccccccccc
Q 002470 513 SEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWI-IRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT 591 (918)
Q Consensus 513 sEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWi-iRApG~DGcSgryVVAASAGntldsgFCSWDfYs 591 (918)
=.|.-||=+--|.+.--||+.+-..+-.|.+|+. |+ +=+|--|| -+-||++|+. -.=-|=+=+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e---------wvr~v~v~~DG-----ti~As~s~dq--tl~vW~~~t 266 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE---------WVRMVRVNQDG-----TIIASCSNDQ--TLRVWVVAT 266 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchH---------hEEEEEecCCe-----eEEEecCCCc--eEEEEEecc
Confidence 3468899999999999999999999999999987 43 23455565 3555655543 344688888
Q ss_pred cceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee
Q 002470 592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV 671 (918)
Q Consensus 592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev 671 (918)
+++++---+-+ .+.--.+.+|+.--..++- + +++.- =||.|.| +|-.+++|+|||--|..+|.--
T Consensus 267 ~~~k~~lR~hE-h~vEci~wap~~~~~~i~~----a--t~~~~------~~~~l~s-~SrDktIk~wdv~tg~cL~tL~- 331 (406)
T KOG0295|consen 267 KQCKAELREHE-HPVECIAWAPESSYPSISE----A--TGSTN------GGQVLGS-GSRDKTIKIWDVSTGMCLFTLV- 331 (406)
T ss_pred chhhhhhhccc-cceEEEEecccccCcchhh----c--cCCCC------CccEEEe-ecccceEEEEeccCCeEEEEEe-
Confidence 87666433332 3444555566544322221 1 11111 3666665 6889999999999998877521
Q ss_pred ccceeeeccCCccceeccccEE--EeecceeeeeecCCCCcceeeeeecCCceeEEEEee-cccccccCccceeecc
Q 002470 672 QKPVLTMDYSSPLQWRNRGKLV--VAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVN-NTDAELGGGVRQRVSS 745 (918)
Q Consensus 672 qkpV~~M~YSSPlQWRnrgKvV--iAe~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~-NtDAE~gGGVRQRvSS 745 (918)
---.+-+-+-.+..||.. +|+--+|.+||++-+ |-+++.+...-=+.+|-.- |-+--+.|+|-|-+-.
T Consensus 332 ----ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 332 ----GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred ----cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 111122333445678866 467779999999854 4444444433333333322 3456678888886643
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=85.40 E-value=2.2 Score=46.33 Aligned_cols=62 Identities=31% Similarity=0.509 Sum_probs=53.5
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCC
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNS 707 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnS 707 (918)
|=|-|++| +-+-..+.+||++.|+-+..-|.+.||.+|.||. ||==|-.|-+++|.+||.++
T Consensus 202 pDGslcas-Ggkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-----nrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 202 PDGSLCAS-GGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-----NRYWLCAATATSIKIWDLES 263 (315)
T ss_pred CCCCEEec-CCCCceEEEEEccCCceeEeccCCCeEeeEEecC-----CceeEeeccCCceEEEeccc
Confidence 66889998 5677888999999999999999999999999985 44457788899999999654
No 31
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=85.11 E-value=12 Score=40.17 Aligned_cols=147 Identities=20% Similarity=0.276 Sum_probs=83.5
Q ss_pred cccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee---cceeeeeecCCCCcceeeeeecCCceeEEE
Q 002470 650 SSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE---AETISLWDVNSLNPQTLLSVSSCGRKISAL 726 (918)
Q Consensus 650 S~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe---~e~islWDVnSL~pq~llsV~~~Gkki~aL 726 (918)
+....|+++|+..++.|-+..+-.--.++++| .-||.+++. ...++++|..+|+|-. .|+..+..
T Consensus 55 ~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s------~DG~~~~v~n~~~~~v~v~D~~tle~v~--~I~~~~~~---- 122 (369)
T PF02239_consen 55 NRDGTVSVIDLATGKVVATIKVGGNPRGIAVS------PDGKYVYVANYEPGTVSVIDAETLEPVK--TIPTGGMP---- 122 (369)
T ss_dssp ETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--------TTTEEEEEEEETTEEEEEETTT--EEE--EEE--EE-----
T ss_pred cCCCeEEEEECCcccEEEEEecCCCcceEEEc------CCCCEEEEEecCCCceeEecccccccee--eccccccc----
Confidence 45679999999999999999999999999998 568866654 5899999999998754 33332211
Q ss_pred EeecccccccCccceeecccc-ccCCC-ceeecC--CceeeeeecCCcccccccccCCCccceeeecCC-eEEEeeeeec
Q 002470 727 HVNNTDAELGGGVRQRVSSAE-AEGND-GVFCTP--DSINILDFRHPAGIGLKIPKFGVNAQSVFSRGD-SIFLGCCNVR 801 (918)
Q Consensus 727 HV~NtDAE~gGGVRQRvSSse-~EgnD-GvfcT~--dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGD-sVf~G~t~~~ 801 (918)
+++..=|+++-- +-+++ =||+-- +.|.++||..|.-+-.++...|....-.|-..| .-|+.+.+..
T Consensus 123 ---------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 123 ---------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp ---------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred ---------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence 111333554332 22333 344433 578899999886554444444443333443334 4455544332
Q ss_pred cccccCCcccceeceeccceeeee
Q 002470 802 STGKKQPSSQVQQFSLRKQRLMNT 825 (918)
Q Consensus 802 ~~~k~q~~s~vqq~SlRk~~Lv~t 825 (918)
- .|.-+.+++++++..
T Consensus 194 n--------~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 194 N--------KIAVIDTKTGKLVAL 209 (369)
T ss_dssp T--------EEEEEETTTTEEEEE
T ss_pred c--------eeEEEeeccceEEEE
Confidence 2 444455666666654
No 32
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.94 E-value=21 Score=40.95 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=109.2
Q ss_pred cCChhHHHHHHhhccCcCcccccCCcccccccceeecccccccCCCCccccCCCCCcceeEeccccc-----c-cccccc
Q 002470 405 EENPIALQFLASLNKDENKVSAKSGLVDLECDEVFETDEAAKSGEKGLSCMFSGKGEAELELTSDER-----L-DEFDDQ 478 (918)
Q Consensus 405 dEN~iA~EFLAsL~~e~~kv~~~~~~~~le~~~v~E~~~a~~s~~q~~s~~~~g~~~~e~~L~adE~-----l-eeFDdQ 478 (918)
+++..|-++...+-.....+-......+|+.....|-+....-.. .++.+..+ .+...+.|+ + ++=||+
T Consensus 51 ~~~~~a~~~~~~~l~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~----~~f~s~~g-~~~y~sne~DPYvt~~d~e~de 125 (463)
T KOG0270|consen 51 DAEESAEEQGKGMLDSSGDVDDDLKEYELKEYDMDEYDEEADGEI----ELFSSLLG-IAVYPSNEKDPYVTIPDDEDDE 125 (463)
T ss_pred hhhhhhhhhcccccccccccCccchhhhhhhhccccchhcccccc----cccccccC-ceeccCCCCCCccccCCcccch
Confidence 344455555555334444555555555666666666554442100 01111111 222233343 2 333445
Q ss_pred cccceeeeecccchhhhhhhhcccccccccceeeecCceEEeeecCCCcceeec--cCccccceecCCCccCC-----CC
Q 002470 479 ENRQAFVIDEGIEDTCTYQLNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDI--TNCEDKAVYKPPTAVSS-----SI 551 (918)
Q Consensus 479 EN~~~~~i~EEtee~c~~ql~~iG~K~stgGWFVsEGE~vLLAHdDgsCSyyDi--AN~EeKavYkpPs~vs~-----n~ 551 (918)
|.++.++| .-++- -||.||-+.--+|-+| -|.++-+.|---..+=| -.
T Consensus 126 ee~de~~V-~psDn------------------------lIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~e 180 (463)
T KOG0270|consen 126 EEKDEEQV-KPSDN------------------------LILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIE 180 (463)
T ss_pred hhccccee-ccCCc------------------------EEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhh
Confidence 55655555 22221 4666776666666553 45566555543333322 35
Q ss_pred ccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCcccccccccccccc
Q 002470 552 WRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVP 631 (918)
Q Consensus 552 W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~ 631 (918)
|-|| |-.+|=.|-||+- ||+|+-.==||..-++-.-=.+..|+. .|+ .+.+. ..|.|..+--.-+
T Consensus 181 wld~-----~~~~~~~gNyvAi----Gtmdp~IeIWDLDI~d~v~P~~~LGs~-~sk-~~~k~----~k~~~~~~gHTda 245 (463)
T KOG0270|consen 181 WLDH-----GSKSGGAGNYVAI----GTMDPEIEIWDLDIVDAVLPCVTLGSK-ASK-KKKKK----GKRSNSASGHTDA 245 (463)
T ss_pred hhhc-----CCCCCCCcceEEE----eccCceeEEeccccccccccceeechh-hhh-hhhhh----cccccccccchHH
Confidence 8888 8889999999854 789999999998766654434444421 111 11111 1133332211101
Q ss_pred ccccceeccccceeeecccccceeEEEEccCCce
Q 002470 632 ETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQ 665 (918)
Q Consensus 632 e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~ 665 (918)
-.-.=|-|-===+||| +|--++|++||+--|.-
T Consensus 246 vl~Ls~n~~~~nVLaS-gsaD~TV~lWD~~~g~p 278 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLAS-GSADKTVKLWDVDTGKP 278 (463)
T ss_pred HHHHHhccccceeEEe-cCCCceEEEEEcCCCCc
Confidence 1111233322235555 57788999999998874
No 33
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=84.73 E-value=30 Score=31.30 Aligned_cols=81 Identities=23% Similarity=0.481 Sum_probs=51.7
Q ss_pred ceeeecccccceeEEEEccCCceEEEEee---ccceeeeccCCccceeccccEEEeecce--eeeeecCCCCcceeeeee
Q 002470 643 PLIASAASSQRVVTVYDIRDGEQIMQWEV---QKPVLTMDYSSPLQWRNRGKLVVAEAET--ISLWDVNSLNPQTLLSVS 717 (918)
Q Consensus 643 PLl~StaS~q~~V~~yDIRDGe~vMkWev---qkpV~~M~YSSPlQWRnrgKvViAe~e~--islWDVnSL~pq~llsV~ 717 (918)
.+++ +++....+.+||++.... .-+.. +.+|..+.+.. .+..+++.... +.+||.....-.......
T Consensus 254 ~~~~-~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 325 (466)
T COG2319 254 SLLA-SGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP------DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325 (466)
T ss_pred CEEE-EecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC------CCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence 4455 889999999999998876 22222 56777775544 55566654433 899988776654444411
Q ss_pred cCCceeEEEEeeccc
Q 002470 718 SCGRKISALHVNNTD 732 (918)
Q Consensus 718 ~~Gkki~aLHV~NtD 732 (918)
..+..+..++. +.|
T Consensus 326 ~~~~~~~~~~~-~~~ 339 (466)
T COG2319 326 GHEGPVSSLSF-SPD 339 (466)
T ss_pred ccCCceEEEEE-CCC
Confidence 22225777777 544
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=84.55 E-value=6.4 Score=42.73 Aligned_cols=172 Identities=21% Similarity=0.343 Sum_probs=113.6
Q ss_pred cceeEEEEccCCce--EEEEeec-cceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEE
Q 002470 652 QRVVTVYDIRDGEQ--IMQWEVQ-KPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISAL 726 (918)
Q Consensus 652 q~~V~~yDIRDGe~--vMkWevq-kpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aL 726 (918)
---|.+|||+.+.. ||..|-- |-|.+..|-- -|+-...+.| ++.+||+.+|.-|.++.++++ -.-.+|
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~------dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp-Vn~vvl 132 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC------DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP-VNTVVL 132 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEee------cCeEEEecCCCceEEEEeccCcccchhccCCCC-cceEEe
Confidence 44689999999876 8888876 7787776543 4555555555 899999999999999999954 444578
Q ss_pred EeecccccccCccceeeccccccCCCceeecC-CceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeecc---
Q 002470 727 HVNNTDAELGGGVRQRVSSAEAEGNDGVFCTP-DSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRS--- 802 (918)
Q Consensus 727 HV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~-dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~~--- 802 (918)
|-|-| || +.|++ -.|-|.|.+.-+=--+-||.-++.+||+--.-|-=++-+.+.+-
T Consensus 133 hpnQt--eL------------------is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 133 HPNQT--EL------------------ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred cCCcc--eE------------------EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 87755 32 11222 24778999988888889999999999976655555555555432
Q ss_pred ----ccccCCcc---cceeceeccceeeeeeecCCCCccccccc---ceeeecCCceeee
Q 002470 803 ----TGKKQPSS---QVQQFSLRKQRLMNTYSLPESNAHSYHSA---ITQVWGNSNLVMG 852 (918)
Q Consensus 803 ----~~k~q~~s---~vqq~SlRk~~Lv~tYslPesNah~h~sa---ItQVWGnSn~Vm~ 852 (918)
+. .|..+ .+-+|-++.+-...-.--|+.- |..-.+ ---||-..||+|+
T Consensus 193 vW~l~~-~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 193 VWRLLN-HQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKL 250 (311)
T ss_pred EEEccC-CCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceee
Confidence 22 33222 2446777766555444334432 222211 2358988888765
No 35
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.05 E-value=23 Score=33.05 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=76.6
Q ss_pred eeecCceEEeeecCCCcceeeccCccccce-ecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccc
Q 002470 511 FVSEGESVLLAHDDGSCSYYDITNCEDKAV-YKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDF 589 (918)
Q Consensus 511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKav-YkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDf 589 (918)
.+..+..|+++-.|+++..+|+.+-+.+-. |..+....+ .+..+ +|=.+ |.+++++..
T Consensus 72 ~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~----~~~~~---~~~~~~~~~------------- 130 (238)
T PF13360_consen 72 PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSS----SPAVD---GDRLYVGTS------------- 130 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--S----EEEEE---TTEEEEEET-------------
T ss_pred eeecccccccccceeeeEecccCCcceeeeeccccccccc-ccccc----CceEe---cCEEEEEec-------------
Confidence 466677777777888999999888887555 443311111 11111 11111 444555443
Q ss_pred cccceeeEEeecCCccccceeeccCCCCc--cccccccccccccccccceeccccceeeecccccceeEEEEccCCceEE
Q 002470 590 YTKDVRAFHIEGEGKTTSRTVLGPLPNNN--IYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIM 667 (918)
Q Consensus 590 Ysk~v~Afh~e~~s~~~Srt~L~pL~nn~--~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vM 667 (918)
...+.++..+.|..--...+ +.|... .+.-.......... +-.|.-+....+.+.+ |++.|+.+
T Consensus 131 -~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~g~~~~~-d~~tg~~~- 196 (238)
T PF13360_consen 131 -SGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVIS---------DGRVYVSSGDGRVVAV-DLATGEKL- 196 (238)
T ss_dssp -CSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECC---------TTEEEEECCTSSEEEE-ETTTTEEE-
T ss_pred -cCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEE---------CCEEEEEcCCCeEEEE-ECCCCCEE-
Confidence 45567777776633222211 111110 00000000000111 1233333333345666 99999955
Q ss_pred EEeeccceeeeccCCccceeccccEEEee-cceeeeeecCC
Q 002470 668 QWEVQKPVLTMDYSSPLQWRNRGKLVVAE-AETISLWDVNS 707 (918)
Q Consensus 668 kWevqkpV~~M~YSSPlQWRnrgKvViAe-~e~islWDVnS 707 (918)
| ++++-+ .++.|+ -..+.|+++. .-.|..||+.+
T Consensus 197 -w--~~~~~~-~~~~~~--~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 197 -W--SKPISG-IYSLPS--VDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -E--EECSS--ECECEE--CCCTEEEEEETTTEEEEEETTT
T ss_pred -E--EecCCC-ccCCce--eeCCEEEEEeCCCEEEEEECCC
Confidence 8 444322 333343 4556666665 58888898876
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.18 E-value=2.9 Score=49.42 Aligned_cols=175 Identities=21% Similarity=0.353 Sum_probs=101.9
Q ss_pred eeecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEec-CCCCCCCccEEEEeccCCCCccccccccc
Q 002470 511 FVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRA-AGADGCSGRYVVAASAGNSLDSGFCSWDF 589 (918)
Q Consensus 511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRA-pG~DGcSgryVVAASAGntldsgFCSWDf 589 (918)
|.-+-.-+|=.-.|+|..+|.+--.---..|+.+-.- -|.+|- |= |-|.++||.-.|- ..-|=|.
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------VwdV~F~P~-----GyYFatas~D~tA--rLWs~d~ 524 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------VWDVQFAPR-----GYYFATASHDQTA--RLWSTDH 524 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcc-------eeeEEecCC-----ceEEEecCCCcee--eeeeccc
Confidence 4444555566678999999999887778889965431 355553 32 8899888776654 2222232
Q ss_pred cc-----------cceeeEEeecCCc---cccceeec--cCCCCccccccccccccccccccceeccccceeeecccccc
Q 002470 590 YT-----------KDVRAFHIEGEGK---TTSRTVLG--PLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQR 653 (918)
Q Consensus 590 Ys-----------k~v~Afh~e~~s~---~~Srt~L~--pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~ 653 (918)
+- -+|.+||-...-. .+-|||=- -.+++ .+|=-.-...+ -.-==|-|||=.|+|.+. -.
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~--V~al~~Sp~Gr~LaSg~e-d~ 599 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGP--VTALAFSPCGRYLASGDE-DG 599 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EEEEecCCCCc--eEEEEEcCCCceEeeccc-CC
Confidence 11 1356677432211 11122211 11222 12200000001 111237899999998665 56
Q ss_pred eeEEEEccCCceEEEEeec-cceeeeccCCccceeccccEEEeecc-eeeeeecCCCC
Q 002470 654 VVTVYDIRDGEQIMQWEVQ-KPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNSLN 709 (918)
Q Consensus 654 ~V~~yDIRDGe~vMkWevq-kpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnSL~ 709 (918)
.|++|||..|..||.---+ .-|-.|.|| |.-+-+|+++++ ++.|||+.-.+
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence 7999999999999876544 456677774 344455666666 69999986443
No 37
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.17 E-value=70 Score=33.59 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=30.5
Q ss_pred cccceeEEEEccCCceEEEEeeccceeee-ccCCccceeccccEEEee
Q 002470 650 SSQRVVTVYDIRDGEQIMQWEVQKPVLTM-DYSSPLQWRNRGKLVVAE 696 (918)
Q Consensus 650 S~q~~V~~yDIRDGe~vMkWevqkpV~~M-~YSSPlQWRnrgKvViAe 696 (918)
+....|.+||..+|+++-+-+...|.+.+ .+++|+-+. |.|+++.
T Consensus 167 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~ 212 (394)
T PRK11138 167 TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGG 212 (394)
T ss_pred CCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEc
Confidence 44567999999999987555555555443 368998764 4566543
No 38
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=82.05 E-value=2.6 Score=40.91 Aligned_cols=62 Identities=16% Similarity=0.497 Sum_probs=47.5
Q ss_pred eccccceeeeccc--ccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecce--------eeeeecC
Q 002470 638 YKPCGPLIASAAS--SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAET--------ISLWDVN 706 (918)
Q Consensus 638 YrPCGPLl~StaS--~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~--------islWDVn 706 (918)
+-|.|-+||.+.. .++.|.+||+++.+.|.+.+... .+-++|-.-|+.+++-+-. +.+|+++
T Consensus 108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4599999998764 35789999999999998877553 3567899999999886532 4666653
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=81.71 E-value=7.2 Score=44.84 Aligned_cols=89 Identities=20% Similarity=0.441 Sum_probs=55.2
Q ss_pred eccccceeeecccccceeEEEEccCCceEEEEee-ccceeeeccC--CccceeccccEEEeec---ceeeeeecCCCCcc
Q 002470 638 YKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYS--SPLQWRNRGKLVVAEA---ETISLWDVNSLNPQ 711 (918)
Q Consensus 638 YrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YS--SPlQWRnrgKvViAe~---e~islWDVnSL~pq 711 (918)
|-|=|-||+ +||...++|+|-+-++-.+-.-.+ .|-+...-+| -|..|-.+--++||-+ -++++|||.+. +
T Consensus 367 ~n~tg~LLa-S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v 443 (524)
T KOG0273|consen 367 WNPTGSLLA-SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--V 443 (524)
T ss_pred ECCCCceEE-EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--c
Confidence 567787776 578999999999888765543322 2223332222 3556655555566544 57899999985 5
Q ss_pred eeeeeecCCceeEEEEee
Q 002470 712 TLLSVSSCGRKISALHVN 729 (918)
Q Consensus 712 ~llsV~~~Gkki~aLHV~ 729 (918)
+||+..-.+-.||+|-..
T Consensus 444 ~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred eeEeeccCCCceEEEEec
Confidence 566655555555555544
No 40
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=80.92 E-value=3 Score=40.53 Aligned_cols=58 Identities=26% Similarity=0.575 Sum_probs=38.7
Q ss_pred cccee-eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEe-ecc----eeeeeecC
Q 002470 641 CGPLI-ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVA-EAE----TISLWDVN 706 (918)
Q Consensus 641 CGPLl-~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViA-e~e----~islWDVn 706 (918)
=|--+ +.+....+.|++||++ ++.|..-. +.++- .+.|--.|+.++. +.. .|.|||++
T Consensus 70 ~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n------~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 70 NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRN------TISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCce------EEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34443 3444556799999997 88887755 23333 3667778886665 332 48999999
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=80.34 E-value=14 Score=43.06 Aligned_cols=240 Identities=21% Similarity=0.335 Sum_probs=138.2
Q ss_pred cCCCcceeeccCcc--ccceecCCCc-cCCCCcc-ceEEEecCCCCCCCccEEEEec--cCCCCccccccccccccceee
Q 002470 523 DDGSCSYYDITNCE--DKAVYKPPTA-VSSSIWR-DCWIIRAAGADGCSGRYVVAAS--AGNSLDSGFCSWDFYTKDVRA 596 (918)
Q Consensus 523 dDgsCSyyDiAN~E--eKavYkpPs~-vs~n~W~-DCWiiRApG~DGcSgryVVAAS--AGntldsgFCSWDfYsk~v~A 596 (918)
-.|....||-+|.| -|.+|.+=.+ +..=-|- |-=-|-|-| +|. +||+.+.. .||++-. -+=++|.+-+
T Consensus 79 ~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG-EGr-erfg~~F~~DSG~SvGe----i~GhSr~ins 152 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG-EGR-ERFGHVFLWDSGNSVGE----ITGHSRRINS 152 (603)
T ss_pred CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe-cCc-cceeEEEEecCCCccce----eeccceeEee
Confidence 46899999999976 5777776554 2333342 222333443 343 45655543 2444332 2235666666
Q ss_pred EEeecCCccccceeec------------cCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCc
Q 002470 597 FHIEGEGKTTSRTVLG------------PLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGE 664 (918)
Q Consensus 597 fh~e~~s~~~Srt~L~------------pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe 664 (918)
-|+... ..-|.+-+ |.-=..+.|-- .--+.+ ==|-|=|-+.||+. +.+.|-+||=.+||
T Consensus 153 ~~~Kps--RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H-skFV~~-----VRysPDG~~Fat~g-sDgki~iyDGktge 223 (603)
T KOG0318|consen 153 VDFKPS--RPFRIATGSDDNTVAFFEGPPFKFKSSFREH-SKFVNC-----VRYSPDGSRFATAG-SDGKIYIYDGKTGE 223 (603)
T ss_pred eeccCC--CceEEEeccCCCeEEEeeCCCeeeeeccccc-ccceee-----EEECCCCCeEEEec-CCccEEEEcCCCcc
Confidence 555443 22233222 22222222210 001111 13889999998765 56778899999999
Q ss_pred eEEEEeeccceeeeccCCccceeccc-cEEEeec-ceeeeeecCCCCcceeeeeecC----CceeEEEEeecccccccCc
Q 002470 665 QIMQWEVQKPVLTMDYSSPLQWRNRG-KLVVAEA-ETISLWDVNSLNPQTLLSVSSC----GRKISALHVNNTDAELGGG 738 (918)
Q Consensus 665 ~vMkWevqkpV~~M~YSSPlQWRnrg-KvViAe~-e~islWDVnSL~pq~llsV~~~----Gkki~aLHV~NtDAE~gGG 738 (918)
+|---|=+.+.-+--|. |-|---+ +++-+.+ -+|.+|||+...- .-+.++. .++|-||-- -|
T Consensus 224 ~vg~l~~~~aHkGsIfa--lsWsPDs~~~~T~SaDkt~KIWdVs~~sl--v~t~~~~~~v~dqqvG~lWq--kd------ 291 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFA--LSWSPDSTQFLTVSADKTIKIWDVSTNSL--VSTWPMGSTVEDQQVGCLWQ--KD------ 291 (603)
T ss_pred EEEEecCCCCccccEEE--EEECCCCceEEEecCCceEEEEEeeccce--EEEeecCCchhceEEEEEEe--CC------
Confidence 99999977766555553 5666444 4444554 4899999988732 2233332 334555543 11
Q ss_pred cceeeccccccCCCceeecCCceeeeeecCCcccccccccCC--CccceeeecCCeEEEeeeeecc
Q 002470 739 VRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFG--VNAQSVFSRGDSIFLGCCNVRS 802 (918)
Q Consensus 739 VRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g--~~~qSvfsrGDsVf~G~t~~~~ 802 (918)
++=+ +.-.-.||.|+--.|+ +=+-|--|- .++-++-.+|+-+|.|.-.+.-
T Consensus 292 ---~lIt---------VSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 292 ---HLIT---------VSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred ---eEEE---------EEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence 2111 1223458999988888 656666665 5566778889999999876543
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=74.69 E-value=3 Score=47.78 Aligned_cols=175 Identities=21% Similarity=0.373 Sum_probs=103.7
Q ss_pred cCceEEeeecCCCcceeeccCccccceecCCCcc-CCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccccc
Q 002470 514 EGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAV-SSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTK 592 (918)
Q Consensus 514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~v-s~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk 592 (918)
.|.-||-+--|++--.||.---+.|..+-=-++. -.=.|.+==-.-.+++|||---|-|-+ .+--.-|-- ++-
T Consensus 287 ~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~---~~P~~t~~G---H~g 360 (524)
T KOG0273|consen 287 KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGE---DRPVKTFIG---HHG 360 (524)
T ss_pred CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecC---CCcceeeec---ccC
Confidence 4566888888999999999777766665433333 123566655566789999865555533 333333433 566
Q ss_pred ceeeEEeecCCc----cccceeeccCCCCccccccccccccccc----cccceeccccc--------eeeecccccceeE
Q 002470 593 DVRAFHIEGEGK----TTSRTVLGPLPNNNIYRRNAFSSVLVPE----THQWWYKPCGP--------LIASAASSQRVVT 656 (918)
Q Consensus 593 ~v~Afh~e~~s~----~~Srt~L~pL~nn~~~rrN~~s~~~~~e----~~qWWYrPCGP--------Ll~StaS~q~~V~ 656 (918)
+|.|.-...... .+.-+-|+=-... +.|+...+..-+ +--| -|-|| +++-+|+++.+|+
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~---~~~~~~~l~~Hskei~t~~w--sp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMG---QSNSVHDLQAHSKEIYTIKW--SPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecC---CCcchhhhhhhccceeeEee--cCCCCccCCCcCCceEEEeecCCeEE
Confidence 666666654332 2222333322111 111122211111 0011 24444 4667789999999
Q ss_pred EEEccCCceEEEE-eeccceeeeccCCccceeccccEEEeec--ceeeeeec
Q 002470 657 VYDIRDGEQIMQW-EVQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDV 705 (918)
Q Consensus 657 ~yDIRDGe~vMkW-evqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDV 705 (918)
+|||.+|-++... .-|-||.++++|- -|+.+..+. -++-+|+.
T Consensus 436 lwdv~~gv~i~~f~kH~~pVysvafS~------~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 436 LWDVESGVPIHTLMKHQEPVYSVAFSP------NGRYLASGSLDGCVHIWST 481 (524)
T ss_pred EEEccCCceeEeeccCCCceEEEEecC------CCcEEEecCCCCeeEeccc
Confidence 9999999999998 7899999999983 445444432 35666764
No 43
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=74.45 E-value=8.9 Score=41.68 Aligned_cols=214 Identities=18% Similarity=0.289 Sum_probs=124.9
Q ss_pred cceeeecccccceeEEEEccCCceEEEEeeccc---eeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeec
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP---VLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSS 718 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp---V~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~ 718 (918)
-|.|+.+|+-.-+|.+|-.+.|--+- -+|-| |=+++-.+ .+++|..|+---|.|+||||-||+|+.+.-.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~r--Tiqh~dsqVNrLeiTp-----dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSR--TIQHPDSQVNRLEITP-----DKKDLAAAGNQHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEE--EEecCccceeeEEEcC-----CcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence 47899999999999999999985443 23333 44444443 5788999999999999999999999999988
Q ss_pred CCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCccceeeecCCeEEEeee
Q 002470 719 CGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCC 798 (918)
Q Consensus 719 ~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t 798 (918)
.-|.|.+.-.- +-| |=-.+++| ||+ +-|.|.|.|.- .++=.+-..+++| .+---
T Consensus 82 h~kNVtaVgF~-----~dg--rWMyTgse----Dgt------~kIWdlR~~~~--qR~~~~~spVn~v-------vlhpn 135 (311)
T KOG0315|consen 82 HTKNVTAVGFQ-----CDG--RWMYTGSE----DGT------VKIWDLRSLSC--QRNYQHNSPVNTV-------VLHPN 135 (311)
T ss_pred cCCceEEEEEe-----ecC--eEEEecCC----Cce------EEEEeccCccc--chhccCCCCcceE-------EecCC
Confidence 77777665331 111 33445544 454 78999999542 1121222333332 22211
Q ss_pred eeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeeeeeccceeeeecccccC---Cc-cccc
Q 002470 799 NVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDG---FQ-SFAS 874 (918)
Q Consensus 799 ~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d~---~q-~~~~ 874 (918)
-+. -+..--...|.-|-|+.-. .+---+||-- ..-.++|=-|--|=++-+-+-=-++|.+-+.... .+ .--+
T Consensus 136 Qte-Lis~dqsg~irvWDl~~~~-c~~~liPe~~--~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 136 QTE-LISGDQSGNIRVWDLGENS-CTHELIPEDD--TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cce-EEeecCCCcEEEEEccCCc-cccccCCCCC--cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 111 2222233566677776542 2233356655 2233445556555444333333378888877443 11 1122
Q ss_pred cccccccceeecCCCCCC
Q 002470 875 DNSSIQKVREIIGPDDLF 892 (918)
Q Consensus 875 D~~~~~~vReviGpDDLy 892 (918)
---+.-.+|+.+-||--|
T Consensus 212 ~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ecccceEEEEEECCCCcE
Confidence 333445567777777544
No 44
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=74.35 E-value=56 Score=36.41 Aligned_cols=157 Identities=24% Similarity=0.465 Sum_probs=104.2
Q ss_pred ceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccc-----ccccc
Q 002470 516 ESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFC-----SWDFY 590 (918)
Q Consensus 516 E~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFC-----SWDfY 590 (918)
--||-+-+|.+|-+|||.--....+|..-+ +|+--+--|..| +||.-||=| =||.-
T Consensus 157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~-------gDV~slsl~p~~------------~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 157 NHILTGSGDMTCALWDIETGQQTQVFHGHT-------GDVMSLSLSPSD------------GNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred CceEecCCCceEEEEEcccceEEEEecCCc-------ccEEEEecCCCC------------CCeEEecccccceeeeecc
Confidence 357888999999999999888888887433 455555544442 333333334 36654
Q ss_pred ccc-eeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEE
Q 002470 591 TKD-VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQW 669 (918)
Q Consensus 591 sk~-v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkW 669 (918)
+-- |++|+--++.. |+. =|-|+|--++ |.|-..+..+||||-+.+|...
T Consensus 218 ~~~c~qtF~ghesDI------------------Nsv-----------~ffP~G~afa-tGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 218 SGQCVQTFEGHESDI------------------NSV-----------RFFPSGDAFA-TGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred CcceeEeeccccccc------------------ceE-----------EEccCCCeee-ecCCCceeEEEeecCCcEEeee
Confidence 432 34454433311 111 1678998776 5678889999999999999887
Q ss_pred ee---ccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470 670 EV---QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVN 729 (918)
Q Consensus 670 ev---qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~ 729 (918)
+- --||-..+|| --|++..|+.. ++-+||+ |.-.......--+-+|+||-|.
T Consensus 268 s~~~~~~gitSv~FS------~SGRlLfagy~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 268 SHDSIICGITSVAFS------KSGRLLFAGYDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred ccCcccCCceeEEEc------ccccEEEeeecCCceeEeec--cccceEEEeeccCCeeEEEEEC
Confidence 63 2367777776 46999999876 5678995 5666655555666677776553
No 45
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=74.18 E-value=4.6 Score=44.91 Aligned_cols=118 Identities=27% Similarity=0.467 Sum_probs=76.9
Q ss_pred cceeeecccccceeEEEEccCCce--EEEEeecc--ceeeeccCCccceec-cccEEEeecc------eeeeeecCCCCc
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQ--IMQWEVQK--PVLTMDYSSPLQWRN-RGKLVVAEAE------TISLWDVNSLNP 710 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~--vMkWevqk--pV~~M~YSSPlQWRn-rgKvViAe~e------~islWDVnSL~p 710 (918)
+|-.+.+|++-++|++||||--.+ +.+|+-|. |-..+| +| ++.+.-+++| .+-||||-+- .
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld-------~nck~~ii~~GtE~~~s~A~v~lwDvR~~-q 154 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD-------LNCKKNIIACGTELTRSDASVVLWDVRSE-Q 154 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee-------ccCcCCeEEeccccccCceEEEEEEeccc-c
Confidence 899999999999999999997654 45677655 444433 45 7788888888 4789999874 3
Q ss_pred ceeeeee---cCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCccceee
Q 002470 711 QTLLSVS---SCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVF 787 (918)
Q Consensus 711 q~llsV~---~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvf 787 (918)
|+|-... ...-.-.++|-+|.+-=|.|-| ||. |||||-..| .-..-.-.||
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv------------DGL------vnlfD~~~d--------~EeDaL~~vi 208 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV------------DGL------VNLFDTKKD--------NEEDALLHVI 208 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecc------------cce------EEeeecCCC--------cchhhHHHhh
Confidence 3322211 0111223488888888777633 554 789996555 3333344556
Q ss_pred ecCCeE
Q 002470 788 SRGDSI 793 (918)
Q Consensus 788 srGDsV 793 (918)
--|-||
T Consensus 209 N~~sSI 214 (376)
T KOG1188|consen 209 NHGSSI 214 (376)
T ss_pred ccccee
Confidence 556554
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=73.92 E-value=3.7 Score=45.09 Aligned_cols=59 Identities=20% Similarity=0.527 Sum_probs=48.7
Q ss_pred cceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc-eeeeeec
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDV 705 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDV 705 (918)
||-|+-++|-.++++|||||--|-|-..|-+-++.|..+.- .-.+|..++.+ .|.+||.
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-----~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-----TSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-----cccceeeccccCceeeecc
Confidence 89999999999999999999999999888888888876542 23356666666 7899997
No 47
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=72.91 E-value=13 Score=44.11 Aligned_cols=149 Identities=24% Similarity=0.366 Sum_probs=88.2
Q ss_pred eeecccccceeEEEEccCCc-eEEEE--eeccceeeeccCCccceeccccEEEeecc-eeeeeecCCCCcceeeee----
Q 002470 645 IASAASSQRVVTVYDIRDGE-QIMQW--EVQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNSLNPQTLLSV---- 716 (918)
Q Consensus 645 l~StaS~q~~V~~yDIRDGe-~vMkW--evqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnSL~pq~llsV---- 716 (918)
|| .||+-.+||+|++--+- .-|+= +-.-=|-+++|- ..|+-.|+=|+++ .|-|||+|++..|.+++.
T Consensus 88 lI-S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 88 LI-SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred eE-EecCCceEEEeecccCcchhHhhhhcccchheeeeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 44 47889999999986553 21210 111223444443 4577778888887 599999999988655543
Q ss_pred -ecC--C--ceeEEEEeeccccc-ccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccC---CCccceee
Q 002470 717 -SSC--G--RKISALHVNNTDAE-LGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKF---GVNAQSVF 787 (918)
Q Consensus 717 -~~~--G--kki~aLHV~NtDAE-~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~---g~~~qSvf 787 (918)
++. | --||.|-.|+|--- ++|| |+--+-+.|=|. ++||=++ -.|+..+-
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGg------------------tek~lr~wDprt----~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGG------------------TEKDLRLWDPRT----CKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecC------------------cccceEEecccc----ccceeeeeccccceEEEE
Confidence 222 2 34677777776221 2222 333455666554 3444443 34444443
Q ss_pred --ecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCC
Q 002470 788 --SRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPE 830 (918)
Q Consensus 788 --srGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPe 830 (918)
.+|-.+..|.. -.-+.-|+|++||-+.||.+|.
T Consensus 221 ~~dDGt~~ls~sS----------DgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 221 VNDDGTRLLSASS----------DGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred EcCCCCeEeecCC----------CceEEeeeccccceeeeEEecc
Confidence 44444544433 2346779999999999987654
No 48
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=71.31 E-value=13 Score=40.78 Aligned_cols=73 Identities=23% Similarity=0.537 Sum_probs=57.5
Q ss_pred eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc-------eeeeeecCCC-----Cccee
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-------TISLWDVNSL-----NPQTL 713 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e-------~islWDVnSL-----~pq~l 713 (918)
+-|.|..-.+++||+..|.|+..|++.-||-..+|+- -|.+.++-+| .|+++|+.-. +-.|+
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~------~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF------GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc------CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 3456666778999999999999999999999999873 5777777665 6899999833 23458
Q ss_pred eeeecCCceeE
Q 002470 714 LSVSSCGRKIS 724 (918)
Q Consensus 714 lsV~~~Gkki~ 724 (918)
+-|.....|+.
T Consensus 141 ~kI~t~~skit 151 (327)
T KOG0643|consen 141 LKIPTPDSKIT 151 (327)
T ss_pred EEecCCcccee
Confidence 88888777664
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.30 E-value=10 Score=45.33 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=67.9
Q ss_pred eeccccce--eeecccccceeEEEEccCCceEEEEe-eccceeeeccCCccceeccccEEEeecc-eeeeeecCCCCcce
Q 002470 637 WYKPCGPL--IASAASSQRVVTVYDIRDGEQIMQWE-VQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNSLNPQT 712 (918)
Q Consensus 637 WYrPCGPL--l~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnSL~pq~ 712 (918)
|-=-=+|. ++.|+|+-++||+|-|.|++.+-..| -..-|+-..| .||--++|=|+++ -|.||+|++= .-
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F-----~~~~~qliS~~adGliKlWnikt~--eC 581 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF-----IRNGKQLISAGADGLIKLWNIKTN--EC 581 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee-----eeCCcEEEeccCCCcEEEEeccch--hh
Confidence 43344566 88899999999999999999999888 4456665544 3555566767766 4799999864 34
Q ss_pred eeeeecCCceeEEEEeeccccc
Q 002470 713 LLSVSSCGRKISALHVNNTDAE 734 (918)
Q Consensus 713 llsV~~~Gkki~aLHV~NtDAE 734 (918)
+-+.---.-||-|||+++-+-+
T Consensus 582 ~~tlD~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 582 EMTLDAHNDRVWALSVSPLLDM 603 (775)
T ss_pred hhhhhhccceeEEEeecCccce
Confidence 4555556789999999986653
No 50
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.04 E-value=1.2e+02 Score=31.32 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=39.8
Q ss_pred ecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCccc-ccccceeeecCCceeeeeeccceeeeeccc
Q 002470 788 SRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHS-YHSAITQVWGNSNLVMGISGEGLFVFDALS 865 (918)
Q Consensus 788 srGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~-h~saItQVWGnSn~Vm~~cG~GLFvFda~~ 865 (918)
-.+|.||+++.. ..|.-|.++.|+++-.+.++...... ..++ -.+.++ .++++..+-.++++|+..
T Consensus 143 v~~~~v~v~~~~----------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s-p~~~~~-~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 143 VANGLVVVRTND----------GRLTALDAATGERLWTYSRVTPALTLRGSAS-PVIADG-GVLVGFAGGKLVALDLQT 209 (377)
T ss_pred EECCEEEEECCC----------CeEEEEEcCCCceeeEEccCCCceeecCCCC-CEEECC-EEEEECCCCEEEEEEccC
Confidence 357899998643 35778888888888777765432111 1111 124453 455555555688898743
No 51
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=65.99 E-value=1.4e+02 Score=29.28 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=53.2
Q ss_pred cccceeeecccccceeEEEEccCC-----ceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceee
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDG-----EQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLL 714 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDG-----e~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~ll 714 (918)
++|-..+-.|. .+.+.+|...++ ..+-.-.+..++..|.+. ..+++|+-.....+-|+++.++++|+
T Consensus 102 ~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-------~~~i~v~~~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 102 HEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-------GNKICVGTSKGFYLIDLNTGSPSELL 173 (275)
T ss_pred cccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe-------CCEEEEEeCCceEEEecCCCCceEEe
Confidence 45544444444 348899998875 344555666777777665 77888988888999999999999999
Q ss_pred eeecCC
Q 002470 715 SVSSCG 720 (918)
Q Consensus 715 sV~~~G 720 (918)
.+....
T Consensus 174 ~~~~~~ 179 (275)
T PF00780_consen 174 DPSDSS 179 (275)
T ss_pred CccCCc
Confidence 776644
No 52
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=65.00 E-value=1.4e+02 Score=29.15 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=99.1
Q ss_pred eeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecC-------------C
Q 002470 654 VVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSC-------------G 720 (918)
Q Consensus 654 ~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~-------------G 720 (918)
.|-+|++.++..-.+..-..+|.-|.-...++. =+|+++ -.|.++|.++|.+..... ... -
T Consensus 17 Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~----llvLsd-~~l~~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (275)
T PF00780_consen 17 GLYVYDLSDPSKPTRILKLSSITQLSVLPELNL----LLVLSD-GQLYVYDLDSLEPVSTSA-PLAFPKSRSLPTKLPET 90 (275)
T ss_pred CEEEEEecCCccceeEeecceEEEEEEecccCE----EEEEcC-CccEEEEchhhccccccc-ccccccccccccccccc
Confidence 388999966666666666666777777665543 244454 789999999998887543 111 1
Q ss_pred ceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccc----cccccCCCccceeeecCCeEEEe
Q 002470 721 RKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIG----LKIPKFGVNAQSVFSRGDSIFLG 796 (918)
Q Consensus 721 kki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIG----lKip~~g~~~qSvfsrGDsVf~G 796 (918)
|.+..+++ .+...| .+ -=++.....|-|+.+..+.+-. +.|. +...+.+|---++.|.+|
T Consensus 91 ~~v~~f~~---~~~~~~-~~-----------~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~ 154 (275)
T PF00780_consen 91 KGVSFFAV---NGGHEG-SR-----------RLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVG 154 (275)
T ss_pred CCeeEEee---cccccc-ce-----------EEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEE
Confidence 11222220 000000 01 1134445588888888875544 2222 226677776669999999
Q ss_pred eeeeccccccCCcccceeceeccceeeeeeecCCCC-------cccccccceeeecCCceeeeeeccceeee
Q 002470 797 CCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESN-------AHSYHSAITQVWGNSNLVMGISGEGLFVF 861 (918)
Q Consensus 797 ~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesN-------ah~h~saItQVWGnSn~Vm~~cG~GLFvF 861 (918)
.. ...+.+.|..+..-..+.++... ...+-..+.++.- ..+.|...-+|+||=
T Consensus 155 ~~-----------~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~~~g~fv~ 214 (275)
T PF00780_consen 155 TS-----------KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYDNIGVFVN 214 (275)
T ss_pred eC-----------CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEecceEEEEc
Confidence 83 33444445544443333333222 1233456666663 488888888898873
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.77 E-value=28 Score=38.14 Aligned_cols=71 Identities=21% Similarity=0.448 Sum_probs=53.3
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeecc-ceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeee
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSV 716 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV 716 (918)
|==|=|...||+....++||||--..-|.-|+-. -++.||++- -+-.||+++. -.|..||+..|+ +||.-+
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k-----y~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL 230 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK-----YNHNVLATGGVDNLVRGWDIRNLR-TPLFEL 230 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc-----cCCcEEEecCCCceEEEEehhhcc-ccceee
Confidence 4456667778999999999999988888899988 899999874 2233444443 368999999998 454433
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=63.94 E-value=60 Score=38.32 Aligned_cols=190 Identities=23% Similarity=0.365 Sum_probs=113.1
Q ss_pred eecccccceeEEEEccCCceEEEEeeccceeeeccCCcc---ceeccccEEEee--cceeeeeecCCCCcceeeeee---
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPL---QWRNRGKLVVAE--AETISLWDVNSLNPQTLLSVS--- 717 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPl---QWRnrgKvViAe--~e~islWDVnSL~pq~llsV~--- 717 (918)
.-|+|--.++.+||+.+-- -.-+|-||+.+=----|. -|-.-||++-|+ --+|-+||.-|+.--+-+-|-
T Consensus 284 FlT~s~DgtlRiWdv~~~k--~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTK--SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred eEEecCCCcEEEEecCCch--hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence 4578889999999998754 122344444333222222 366778884443 258999999888766655543
Q ss_pred cCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCc-----ccccccccCCCccceeeecCCe
Q 002470 718 SCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPA-----GIGLKIPKFGVNAQSVFSRGDS 792 (918)
Q Consensus 718 ~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~Ps-----GIGlKip~~g~~~qSvfsrGDs 792 (918)
..|.-|+|+-..- | | ++-+|- |+ +|+.-|.|.|++- -+| +|+.=..+.++||.-|-
T Consensus 362 ~~g~~Itsi~FS~-d-----g-~~LlSR----g~------D~tLKvWDLrq~kkpL~~~tg--L~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 362 LPGQDITSISFSY-D-----G-NYLLSR----GF------DDTLKVWDLRQFKKPLNVRTG--LPTPFPGTDCCFSPDDK 422 (641)
T ss_pred CCCCceeEEEecc-c-----c-chhhhc----cC------CCceeeeeccccccchhhhcC--CCccCCCCccccCCCce
Confidence 3344455554432 1 1 122222 22 4678899999873 233 34445567889999998
Q ss_pred EEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeec-CCceeeeeecccee--eeeccc
Q 002470 793 IFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWG-NSNLVMGISGEGLF--VFDALS 865 (918)
Q Consensus 793 Vf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWG-nSn~Vm~~cG~GLF--vFda~~ 865 (918)
+.+- +.+.-+++....|+-|.-+. |-.+|.++-++||-|.-. |- -=|-||+.||.|+. .||+-+
T Consensus 423 li~T---GtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSvv~~~----WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 423 LILT---GTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASVVRCL----WHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEEe---cccccCCCCCceEEEEeccc--eeeEEEecCCCceEEEEe----ecchhhheeeecCCCceEEEECccc
Confidence 7652 22334444445677777665 445677777788876432 22 23446888888864 456543
No 55
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=63.11 E-value=14 Score=44.17 Aligned_cols=115 Identities=21% Similarity=0.410 Sum_probs=70.9
Q ss_pred EEEEeccCCC--Cccccccccccccc------eeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccc
Q 002470 570 YVVAASAGNS--LDSGFCSWDFYTKD------VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPC 641 (918)
Q Consensus 570 yVVAASAGnt--ldsgFCSWDfYsk~------v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPC 641 (918)
-+|.-++++. -|-.||+-.||=-- .|-+-++. .-.-|...|+|....- -=|-|=
T Consensus 485 ~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~--~~PlRifaghlsDV~c----------------v~FHPN 546 (707)
T KOG0263|consen 485 CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH--NKPLRIFAGHLSDVDC----------------VSFHPN 546 (707)
T ss_pred eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc--CCchhhhcccccccce----------------EEECCc
Confidence 4666665554 35569999888321 11111111 1234555555544421 113455
Q ss_pred cceeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeecc--eeeeeecCCCC
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLN 709 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~ 709 (918)
.-+++ |.|+-++|.+|||..|.+|--.-= -.||.+|+||- -|+-...+.| .|-+||.-+=+
T Consensus 547 s~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp------~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 547 SNYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP------CGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred ccccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC------CCceEeecccCCcEEEEEcCCCc
Confidence 55555 559999999999999999876643 35999999986 4655554444 69999987633
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=62.67 E-value=40 Score=37.17 Aligned_cols=152 Identities=24% Similarity=0.407 Sum_probs=93.8
Q ss_pred cceeccccceeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcc
Q 002470 635 QWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQ 711 (918)
Q Consensus 635 qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq 711 (918)
|==|--=|-||.| |++..+++||=--+||.+-..+= +--|...| +.|- .|.+|.++ -+|.||||.+
T Consensus 15 qiKyN~eGDLlFs-caKD~~~~vw~s~nGerlGty~GHtGavW~~D----id~~--s~~liTGSAD~t~kLWDv~t---- 83 (327)
T KOG0643|consen 15 QIKYNREGDLLFS-CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD----IDWD--SKHLITGSADQTAKLWDVET---- 83 (327)
T ss_pred eEEecCCCcEEEE-ecCCCCceEEEecCCceeeeecCCCceEEEEE----ecCC--cceeeeccccceeEEEEcCC----
Confidence 4456667888876 56778899999999999876543 33444443 3443 45666654 5899999987
Q ss_pred eeeeeecCCceeEEEEeecccccccCccceeeccccccCCCceeecCC------ceeeeeecCCc----cc--ccccccC
Q 002470 712 TLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPD------SINILDFRHPA----GI--GLKIPKF 779 (918)
Q Consensus 712 ~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~d------siNvlDFR~Ps----GI--GlKip~~ 779 (918)
||++.-+-++- .=+||.=+.- ||--++||++ .|+++|-|.++ += =+|||.+
T Consensus 84 --------Gk~la~~k~~~--------~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 84 --------GKQLATWKTNS--------PVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred --------CcEEEEeecCC--------eeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 55544443221 1123433333 6666667655 58999999776 22 3788888
Q ss_pred CCcccee-e-ecCCeEEEeeeeeccccccCCcccceeceeccc-eeee
Q 002470 780 GVNAQSV-F-SRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQ-RLMN 824 (918)
Q Consensus 780 g~~~qSv-f-srGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~-~Lv~ 824 (918)
.-.+.+. . .-|+-|+- ++..--+.+|++|.| .+|.
T Consensus 147 ~skit~a~Wg~l~~~ii~----------Ghe~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIA----------GHEDGSISIYDARTGKELVD 184 (327)
T ss_pred ccceeeeeecccCCEEEE----------ecCCCcEEEEEcccCceeee
Confidence 7433332 1 12333333 344567899999997 4544
No 57
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=58.49 E-value=58 Score=34.44 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=20.7
Q ss_pred cCCCCcccccccceeeecCCceeeeeec
Q 002470 828 LPESNAHSYHSAITQVWGNSNLVMGISG 855 (918)
Q Consensus 828 lPesNah~h~saItQVWGnSn~Vm~~cG 855 (918)
+|..+.|.||.+-.-+||....+-.+.|
T Consensus 115 ~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 115 FGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cCCCCCcccccccCceECCCCCEEEecc
Confidence 5655567889988889998766665555
No 58
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=57.71 E-value=11 Score=42.70 Aligned_cols=65 Identities=29% Similarity=0.556 Sum_probs=49.8
Q ss_pred ceeccccceeeecccccceeEEEEccCCceEEEEe-eccceeeeccCCccceeccccEEEeec--ceeeeeecCC
Q 002470 636 WWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNS 707 (918)
Q Consensus 636 WWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnS 707 (918)
=-|-|=|-+||| ||..+.|++||-|+|.++.... ---||.- +-|-+-..|+|.+. -+|.+|||..
T Consensus 373 V~fSPd~r~IAS-aSFDkSVkLW~g~tGk~lasfRGHv~~VYq------vawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 373 VSFSPDGRYIAS-ASFDKSVKLWDGRTGKFLASFRGHVAAVYQ------VAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEECCCccEEEE-eecccceeeeeCCCcchhhhhhhccceeEE------EEeccCccEEEEcCCCceEEEEEeee
Confidence 346677766665 7999999999999999987665 2234544 45778888999875 5899999975
No 59
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=57.30 E-value=2.9 Score=43.27 Aligned_cols=32 Identities=41% Similarity=0.620 Sum_probs=23.4
Q ss_pred cccccCccceeeccccccCCCceeecCCceeeeeecCCcc
Q 002470 732 DAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAG 771 (918)
Q Consensus 732 DAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsG 771 (918)
=+||+|||||||.=+-| ++++-.|=+.| -|||
T Consensus 140 p~eLSGGqqQRVAIARA------L~~~P~iilAD--EPTg 171 (226)
T COG1136 140 PSELSGGQQQRVAIARA------LINNPKIILAD--EPTG 171 (226)
T ss_pred chhcCHHHHHHHHHHHH------HhcCCCeEEee--Cccc
Confidence 46999999999998887 55555555555 4554
No 60
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=57.01 E-value=1.1e+02 Score=34.06 Aligned_cols=160 Identities=21% Similarity=0.307 Sum_probs=99.0
Q ss_pred CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccce
Q 002470 515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDV 594 (918)
Q Consensus 515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v 594 (918)
+.-.|.+--||+|..||++-.+.|-.|+--..+-.-.+-|==-|=.-|.|||-=+|=+-++....+-+. .+-+
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-------~~~i 97 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-------DEGI 97 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC-------CCce
Confidence 445677889999999999988998888765555433333322233457788877766555544333221 0111
Q ss_pred eeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccc
Q 002470 595 RAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKP 674 (918)
Q Consensus 595 ~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkp 674 (918)
+ +.+.- .++-| +-++|--+.|++||.|.--++---+.-|-
T Consensus 98 ~----------------------------------ci~~~--~~~~~----vIsgsWD~~ik~wD~R~~~~~~~~d~~kk 137 (323)
T KOG1036|consen 98 R----------------------------------CIEYS--YEVGC----VISGSWDKTIKFWDPRNKVVVGTFDQGKK 137 (323)
T ss_pred E----------------------------------EEEee--ccCCe----EEEcccCccEEEEeccccccccccccCce
Confidence 1 11110 11222 34678889999999998777777888889
Q ss_pred eeeeccCCccceeccccEEE-eecceeeeeecCCCCcceeeeeecCCceeEEEEe
Q 002470 675 VLTMDYSSPLQWRNRGKLVV-AEAETISLWDVNSLNPQTLLSVSSCGRKISALHV 728 (918)
Q Consensus 675 V~~M~YSSPlQWRnrgKvVi-Ae~e~islWDVnSL~pq~llsV~~~Gkki~aLHV 728 (918)
|.+|+-+ .-+||| .--+++-+||.--|.---..--+..--+++|+-.
T Consensus 138 Vy~~~v~-------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~ 185 (323)
T KOG1036|consen 138 VYCMDVS-------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL 185 (323)
T ss_pred EEEEecc-------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE
Confidence 9999975 457888 5567899999876643222222223345555543
No 61
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=54.76 E-value=20 Score=40.10 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=43.9
Q ss_pred cceeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc
Q 002470 635 QWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE 698 (918)
Q Consensus 635 qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e 698 (918)
.=| -|||-+|+ |+|..-.+++||+++|..+-+-....||.+.-|- =|++.|+|+.-.+
T Consensus 71 l~W-S~dgr~Ll-tsS~D~si~lwDl~~gs~l~rirf~spv~~~q~h----p~k~n~~va~~~~ 128 (405)
T KOG1273|consen 71 LCW-SRDGRKLL-TSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWH----PRKRNKCVATIME 128 (405)
T ss_pred EEe-cCCCCEee-eecCCceeEEEeccCCCceeEEEccCccceeeec----cccCCeEEEEEec
Confidence 345 47999887 4678889999999999988888877787765332 1788888876543
No 62
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=54.45 E-value=19 Score=40.57 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=36.8
Q ss_pred cccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec
Q 002470 648 AASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA 697 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~ 697 (918)
+++....+.+||.++||++ |++.-+ +.-+.+|+-|.-.||++|+-+
T Consensus 477 ~g~~~G~l~a~D~~TGe~l--w~~~~g--~~~~a~P~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 477 YGTLEGYFKAFDAKTGEEL--WKFKTG--SGIVGPPVTYEQDGKQYVAVL 522 (527)
T ss_pred EECCCCeEEEEECCCCCEe--EEEeCC--CCceecCEEEEeCCEEEEEEE
Confidence 3566789999999999999 555444 566779999999999999753
No 63
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.73 E-value=28 Score=41.99 Aligned_cols=139 Identities=24% Similarity=0.426 Sum_probs=90.2
Q ss_pred ccEEEEeccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeee
Q 002470 568 GRYVVAASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIAS 647 (918)
Q Consensus 568 gryVVAASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~S 647 (918)
|.|+ |+++.|-.||-||-- +.-..|.-.+.+...| +|+ +-|=|-++++
T Consensus 124 ~~~~----a~gStdtd~~iwD~R--k~Gc~~~~~s~~~vv~-~l~-------------------------lsP~Gr~v~~ 171 (825)
T KOG0267|consen 124 GEFF----ASGSTDTDLKIWDIR--KKGCSHTYKSHTRVVD-VLR-------------------------LSPDGRWVAS 171 (825)
T ss_pred eEEe----ccccccccceehhhh--ccCceeeecCCcceeE-EEe-------------------------ecCCCceeec
Confidence 4566 889999999999953 3333344443111111 111 2366777888
Q ss_pred cccccceeEEEEccCCceEEEEe-eccceeeeccCCccceeccccEEEe---ecceeeeeecC------CCCcc------
Q 002470 648 AASSQRVVTVYDIRDGEQIMQWE-VQKPVLTMDYSSPLQWRNRGKLVVA---EAETISLWDVN------SLNPQ------ 711 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M~YSSPlQWRnrgKvViA---e~e~islWDVn------SL~pq------ 711 (918)
.+. .-.|++||.+-|+.+-.++ -.-+|++.|+ -|+. +.+| --+++.|||.+ |..|.
T Consensus 172 g~e-d~tvki~d~~agk~~~ef~~~e~~v~sle~-hp~e------~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 172 GGE-DNTVKIWDLTAGKLSKEFKSHEGKVQSLEF-HPLE------VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred cCC-cceeeeeccccccccccccccccccccccc-Cchh------hhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 777 5689999999999887666 3467777773 4543 2222 24789999988 55554
Q ss_pred ----eeeeeecCCceeEEE-----------EeecccccccCccceeeccc
Q 002470 712 ----TLLSVSSCGRKISAL-----------HVNNTDAELGGGVRQRVSSA 746 (918)
Q Consensus 712 ----~llsV~~~Gkki~aL-----------HV~NtDAE~gGGVRQRvSSs 746 (918)
+..-...+|-+++.+ |++-+..|+-|++=|=++--
T Consensus 244 ~~fn~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ 293 (825)
T KOG0267|consen 244 LAFNPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHK 293 (825)
T ss_pred eeecCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCc
Confidence 223344567777766 67788889999998855443
No 64
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.28 E-value=1.8e+02 Score=30.40 Aligned_cols=196 Identities=17% Similarity=0.287 Sum_probs=94.5
Q ss_pred ccccceeeecccccceeEEEEccC-CceEEE---E--eeccce---eeeccCCccceeccccEEEe---ecceeeeeecC
Q 002470 639 KPCGPLIASAASSQRVVTVYDIRD-GEQIMQ---W--EVQKPV---LTMDYSSPLQWRNRGKLVVA---EAETISLWDVN 706 (918)
Q Consensus 639 rPCGPLl~StaS~q~~V~~yDIRD-Ge~vMk---W--evqkpV---~~M~YSSPlQWRnrgKvViA---e~e~islWDVn 706 (918)
-|.|-.|+.+.-....|.+|+|.+ |..--. | +-+.|. ......--+.+-..|+.|++ +++.|.+||++
T Consensus 95 ~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 95 DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 367888888888899999999987 543221 2 111222 11111222456667775555 78999999997
Q ss_pred CCCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCceeec---CCceeeeeecCCcccc---cccccCC
Q 002470 707 SLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCT---PDSINILDFRHPAGIG---LKIPKFG 780 (918)
Q Consensus 707 SL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT---~dsiNvlDFR~PsGIG---lKip~~g 780 (918)
.-..+ +...+.. ....|.|=|.=+=+.+ |.- +|++ ...|.++++..+.|-= ..++.+.
T Consensus 175 ~~~~~-----------l~~~~~~--~~~~G~GPRh~~f~pd--g~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 175 DDTGK-----------LTPVDSI--KVPPGSGPRHLAFSPD--GKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTS-T-----------EEEEEEE--ECSTTSSEEEEEE-TT--SSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred CCCce-----------EEEeecc--ccccCCCCcEEEEcCC--cCE-EEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 53321 1111111 2233444444322210 111 2222 2234455554444411 1122221
Q ss_pred C-------ccceeee-cCCeEEEeeeeeccccccCCcccceeceec--cceeeeeeecCCCCcccccccceeeecCCcee
Q 002470 781 V-------NAQSVFS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLR--KQRLMNTYSLPESNAHSYHSAITQVWGNSNLV 850 (918)
Q Consensus 781 ~-------~~qSvfs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlR--k~~Lv~tYslPesNah~h~saItQVWGnSn~V 850 (918)
. -+.-.++ +|.-+|+.... ...|-.|.|. .|+|.-.-.+|-.-.++.|-+|+- .-+++
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~---------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~---~g~~l 306 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRG---------SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP---DGRYL 306 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECT---------TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T---TSSEE
T ss_pred ccccccCCceeEEEecCCCEEEEEecc---------CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC---CCCEE
Confidence 1 1111233 67778875543 4667778882 355555555555566788877743 23444
Q ss_pred eeeec--cceeeee
Q 002470 851 MGISG--EGLFVFD 862 (918)
Q Consensus 851 m~~cG--~GLFvFd 862 (918)
..+|. ..+.+|+
T Consensus 307 ~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 307 YVANQDSNTVSVFD 320 (345)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEecCCCeEEEEE
Confidence 44442 2455554
No 65
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.76 E-value=3.5e+02 Score=29.17 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.4
Q ss_pred eccccceeeecccccceeEEEEccC-CceEEEEeeccceeeeccCCccceeccccEE-EeecceeeeeecCCCCcc
Q 002470 638 YKPCGPLIASAASSQRVVTVYDIRD-GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLV-VAEAETISLWDVNSLNPQ 711 (918)
Q Consensus 638 YrPCGPLl~StaS~q~~V~~yDIRD-Ge~vMkWevqkpV~~M~YSSPlQWRnrgKvV-iAe~e~islWDVnSL~pq 711 (918)
+-|.|-.|+.++.....+.+|++.. |..+-... . ..| .++|-..|+.+ .+..+.|-+||+.+-.++
T Consensus 299 wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~---~---~~~--~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 299 WSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG---G---RGY--SAQISADGKTLVMINGDNVVKQDLTSGSTE 366 (429)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEEec---C---CCC--CccCCCCCCEEEEEcCCCEEEEECCCCCeE
Confidence 4799998888776667788888753 33222211 1 113 35798888754 555577888998765443
No 66
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.47 E-value=2e+02 Score=32.19 Aligned_cols=199 Identities=25% Similarity=0.305 Sum_probs=119.6
Q ss_pred cceEEEecCCCCCCCccEEEEeccC----CCCccccccccccccceeeEEeecCCccccceeeccCCCC----ccccccc
Q 002470 553 RDCWIIRAAGADGCSGRYVVAASAG----NSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNN----NIYRRNA 624 (918)
Q Consensus 553 ~DCWiiRApG~DGcSgryVVAASAG----ntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn----~~~rrN~ 624 (918)
..||...+-++=+|+ -+++.+.| ++-|-.|---|+|++.+.- .-.-++++.+--++.|-+.. ....+
T Consensus 84 s~~w~f~~~~~vk~~--a~~d~~~glIycgshd~~~yalD~~~~~cVy-kskcgG~~f~sP~i~~g~~sly~a~t~G~-- 158 (354)
T KOG4649|consen 84 SQIWNFVILETVKVR--AQCDFDGGLIYCGSHDGNFYALDPKTYGCVY-KSKCGGGTFVSPVIAPGDGSLYAAITAGA-- 158 (354)
T ss_pred hheeeeeehhhhccc--eEEcCCCceEEEecCCCcEEEecccccceEE-ecccCCceeccceecCCCceEEEEeccce--
Confidence 479999999999995 46777766 5678888888999988753 34444445555566665554 11111
Q ss_pred ccccc--c-cccccceeccccceeee-cc---c-----ccceeEEEEccCCceEEEEeeccceeeeccCC-cc-c---ee
Q 002470 625 FSSVL--V-PETHQWWYKPCGPLIAS-AA---S-----SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSS-PL-Q---WR 687 (918)
Q Consensus 625 ~s~~~--~-~e~~qWWYrPCGPLl~S-ta---S-----~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSS-Pl-Q---WR 687 (918)
.-++. + +....|=.--=||+.+| -+ | -.+.++.|| .-|+||-+..+.-|+.+----| |+ | .-
T Consensus 159 vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 159 VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 11111 1 22334444444788777 22 2 234678899 8999999999999976533333 54 2 11
Q ss_pred c----------cccEEEeecc--eeee-------eecCCCCc--ceeeeeecCCceeEEEEeecccccc--cCccceeec
Q 002470 688 N----------RGKLVVAEAE--TISL-------WDVNSLNP--QTLLSVSSCGRKISALHVNNTDAEL--GGGVRQRVS 744 (918)
Q Consensus 688 n----------rgKvViAe~e--~isl-------WDVnSL~p--q~llsV~~~Gkki~aLHV~NtDAE~--gGGVRQRvS 744 (918)
| .|.|+.|--- +.++ +|.-+++. ..||.+++..+|+-.|-+.-.=||. -||+-|-+.
T Consensus 238 ~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~ 317 (354)
T KOG4649|consen 238 NENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLE 317 (354)
T ss_pred cCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEE
Confidence 1 1222222111 1111 34444433 4688899999999999887776654 478888887
Q ss_pred cccccCCCceeecCC
Q 002470 745 SAEAEGNDGVFCTPD 759 (918)
Q Consensus 745 Sse~EgnDGvfcT~d 759 (918)
.-|-.+ -||.++.
T Consensus 318 ~~el~~--eIFsSPv 330 (354)
T KOG4649|consen 318 AIELSN--EIFSSPV 330 (354)
T ss_pred EeecCc--ccccCCe
Confidence 666633 5777665
No 67
>TIGR02241 conserved hypothetical phage tail region protein. This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.
Probab=48.09 E-value=34 Score=32.46 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=33.2
Q ss_pred cccccc-eeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCc
Q 002470 631 PETHQW-WYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSP 683 (918)
Q Consensus 631 ~e~~qW-WYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSP 683 (918)
.+...| ||+-|=+=-...+-..-.|.+|| .+|+.+|+|.+.+-.- ..|+-|
T Consensus 65 ~~~~l~~W~~~~~~~~~~~~rk~~~I~l~d-~~g~~~~~W~~~~a~P-~k~~~p 116 (140)
T TIGR02241 65 NDSDLWQWANDSMLNDMGTRRKNASIRLYN-EAGEPLMRWEVINAWP-TKYGAP 116 (140)
T ss_pred CCHHHHHHHHHhhcccCcceeeEEEEEEEC-CCCCcEEEEEEEeEEE-EEEECC
Confidence 456678 99988220012244455678899 6899999999988543 335555
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=47.84 E-value=3.5e+02 Score=28.31 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=99.5
Q ss_pred ccceeEEEEc--cCCceEEEEeeccceeeeccCCccceeccccEEEeecc------eeeeeecCCC--CcceeeeeecCC
Q 002470 651 SQRVVTVYDI--RDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE------TISLWDVNSL--NPQTLLSVSSCG 720 (918)
Q Consensus 651 ~q~~V~~yDI--RDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e------~islWDVnSL--~pq~llsV~~~G 720 (918)
..+.|.+|++ ..|+ |+.-..+......+.|.+-..++++.+-.| .|..|+++.- ..+.+-++.+.|
T Consensus 11 ~~~gI~~~~~d~~~g~----l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGT----LTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp SSTEEEEEEEETTTTE----EEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCcEEEEEEcCCCCC----ceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence 3478888888 4443 333333778888999999666666655555 7888888764 445566666666
Q ss_pred ceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccc-------------cCCCc-ccee
Q 002470 721 RKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIP-------------KFGVN-AQSV 786 (918)
Q Consensus 721 kki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip-------------~~g~~-~qSv 786 (918)
..-..+.+.....-| =.+-. ...+|.+++...+--|+.... .-+.. -+.+
T Consensus 87 ~~p~~i~~~~~g~~l--------~vany--------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFL--------YVANY--------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp SCEEEEEECTTSSEE--------EEEET--------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred CCcEEEEEecCCCEE--------EEEEc--------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence 654444433222111 00000 022344444443322332210 11112 2457
Q ss_pred ee-cCCeEEEeeeeeccccccCCcccceeceeccce--e--eeeeecCCCCcccccccceeeecCCceeeeee--cccee
Q 002470 787 FS-RGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQR--L--MNTYSLPESNAHSYHSAITQVWGNSNLVMGIS--GEGLF 859 (918)
Q Consensus 787 fs-rGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~--L--v~tYslPesNah~h~saItQVWGnSn~Vm~~c--G~GLF 859 (918)
|+ +|.-||+-... .-+|.+|.+..+. | +.++.+|. .+.+.|.+++. +..++.-+| ..-++
T Consensus 151 ~~pdg~~v~v~dlG---------~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~p---dg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 151 FSPDGRFVYVPDLG---------ADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSP---DGKYAYVVNELSNTVS 217 (345)
T ss_dssp E-TTSSEEEEEETT---------TTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-T---TSSEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEecC---------CCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcC---CcCEEEEecCCCCcEE
Confidence 77 57888875431 2578999998776 6 45666654 67799998877 444444444 44577
Q ss_pred eeecc
Q 002470 860 VFDAL 864 (918)
Q Consensus 860 vFda~ 864 (918)
+|+.-
T Consensus 218 v~~~~ 222 (345)
T PF10282_consen 218 VFDYD 222 (345)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 77655
No 69
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=46.63 E-value=37 Score=23.96 Aligned_cols=35 Identities=17% Similarity=0.490 Sum_probs=23.2
Q ss_pred ceEEEEee-ccceeeeccCCccceeccccEEEeecc--eeeeee
Q 002470 664 EQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWD 704 (918)
Q Consensus 664 e~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWD 704 (918)
+.+..++- +.+|-+|+|+.- +..+++..+ +|.+||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 33444443 378888887665 667766654 899998
No 70
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.48 E-value=51 Score=40.15 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=61.2
Q ss_pred ceeeecccccceeEEEEccCCceEEEEeecc-----ceeeeccCCccceeccccEEEeec-ceeeeeecCCCCcceeeee
Q 002470 643 PLIASAASSQRVVTVYDIRDGEQIMQWEVQK-----PVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQTLLSV 716 (918)
Q Consensus 643 PLl~StaS~q~~V~~yDIRDGe~vMkWevqk-----pV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq~llsV 716 (918)
|-..+++.--+.|.+||||--+ +||+|. ||+..+|.- ||+=|--.+- -.|.|||+-+=.+.++
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhP-----nr~~lATGGRDK~vkiWd~t~~~~~~~--- 257 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHP-----NREWLATGGRDKMVKIWDMTDSRAKPK--- 257 (839)
T ss_pred CceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecC-----CCceeeecCCCccEEEEeccCCCccce---
Confidence 6666677777777777777443 566663 899999864 4443333332 4699999998555554
Q ss_pred ecCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCc
Q 002470 717 SSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPA 770 (918)
Q Consensus 717 ~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~Ps 770 (918)
|+.||=|-|| =||=|=--+-+-+. --..-+-+|+|.|.|-|-
T Consensus 258 ----------~tInTiapv~-rVkWRP~~~~hLAt-csmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 258 ----------HTINTIAPVG-RVKWRPARSYHLAT-CSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ----------eEEeecceee-eeeeccCccchhhh-hhccccceEEEEeecccc
Confidence 4555556554 24433211111000 001124579999999883
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.28 E-value=56 Score=35.72 Aligned_cols=125 Identities=19% Similarity=0.362 Sum_probs=76.9
Q ss_pred ccccceeEEEEccCCceEEEEeecc-ceeeeccCCccceeccccEEEeec--ceeeeeecCCCCcceeeeeecCCceeEE
Q 002470 649 ASSQRVVTVYDIRDGEQIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTLLSVSSCGRKISA 725 (918)
Q Consensus 649 aS~q~~V~~yDIRDGe~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~llsV~~~Gkki~a 725 (918)
+-+.|.|.+||+..|.|+-||.-.- -|-+ +|+-.-.-||+.+. -+|.+||-.|-.++|+..+.-.---|+-
T Consensus 77 ~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNt------V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVDRRFRGHLAQVNT------VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred CCCCceEEEEEcccCeeeeecccccceeeE------EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence 4478999999999999999997542 2222 34445555666553 4799999999999998877665555555
Q ss_pred EEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccc-cCCCccce--eeecCCeEEEeeeeecc
Q 002470 726 LHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIP-KFGVNAQS--VFSRGDSIFLGCCNVRS 802 (918)
Q Consensus 726 LHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip-~~g~~~qS--vfsrGDsVf~G~t~~~~ 802 (918)
+-|+ +-|+=+| --|| .+-++|.|- |.-+. -+|-.+.| +-.+|.-+.+||.....
T Consensus 151 i~v~--~heIvaG-----------S~DG------tvRtydiR~----G~l~sDy~g~pit~vs~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 151 IDVA--EHEIVAG-----------SVDG------TVRTYDIRK----GTLSSDYFGHPITSVSFSKDGNCSLASSLDSTL 207 (307)
T ss_pred EEec--ccEEEee-----------ccCC------cEEEEEeec----ceeehhhcCCcceeEEecCCCCEEEEeecccee
Confidence 5543 3343332 1133 345566663 32222 23433343 34456677777776544
No 72
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=45.25 E-value=1.2e+02 Score=34.65 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=102.2
Q ss_pred cccccceeEEEEccCCce-EEEEeeccceeeeccCCccceecc-ccEEEeecceeeeeecCCCCcceeeeeecCCceeEE
Q 002470 648 AASSQRVVTVYDIRDGEQ-IMQWEVQKPVLTMDYSSPLQWRNR-GKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISA 725 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~-vMkWevqkpV~~M~YSSPlQWRnr-gKvViAe~e~islWDVnSL~pq~llsV~~~Gkki~a 725 (918)
.+.....+.+|||.|-+. ...|++.-+ + +.+.-|-. ++|++.-...+.+|...-.++..++-
T Consensus 93 ~~~~~t~i~vYDIsD~~~P~~~~~~~~~--G----~yvsSR~ig~~vy~Vt~~~~~~~~~~~~~~~~~~P---------- 156 (521)
T PF09826_consen 93 YYKSSTKITVYDISDPSNPKLLREIEIE--G----SYVSSRKIGDYVYLVTNSYPNYYAIEEADLEDILP---------- 156 (521)
T ss_pred cCCceeEEEEEECCCCCCceEEEEEEee--e----EEEeEEEECCEEEEEEecCCccchhhcccccccCc----------
Confidence 455677899999998752 333333211 1 23445544 56777777777777333333332221
Q ss_pred EEeecccccccCccceeeccccccCCCceeecCC--ceeeeeecCCcccccccccCCCccceeeecCCeEEEeeeeeccc
Q 002470 726 LHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPD--SINILDFRHPAGIGLKIPKFGVNAQSVFSRGDSIFLGCCNVRST 803 (918)
Q Consensus 726 LHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~d--siNvlDFR~PsGIGlKip~~g~~~qSvfsrGDsVf~G~t~~~~~ 803 (918)
++..+ |+.-+.+-..+.--=-+...... .|=.||- .|....-...=+| ..+-|+.-.|++||.+......
T Consensus 157 -~~~~~-----~~~~~~~~~~~~~y~p~~~~~~~~~~i~s~dl-~~~~~~~~~~~~g-~~~~vY~S~~~LYia~~~~~~~ 228 (521)
T PF09826_consen 157 -SYRDN-----GEEATVIVPCDIIYFPGGPSGSNYTTITSIDL-DPDKASDSTSVLG-SGGNVYMSENNLYIASNRYYYE 228 (521)
T ss_pred -eEEec-----CcceeeecccceEEecCCCCCCcEEEEEEEeC-CCCCccceeEEEe-cCCEEEEeCCcEEEEEeccccc
Confidence 11111 22222221111100000000111 1222333 4444333333344 6677888888899988877642
Q ss_pred -------------cccCCcccceeceecc------------ceeeeeeecCCCCcccccccceeeecCCceeeeeeccce
Q 002470 804 -------------GKKQPSSQVQQFSLRK------------QRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGL 858 (918)
Q Consensus 804 -------------~k~q~~s~vqq~SlRk------------~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GL 858 (918)
...+....|..|+|.+ |.|.|.|+|-|-+-|.-=..-++.| ...-.....+.|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~--~~~~~~~s~N~l 306 (521)
T PF09826_consen 229 PYAMMRFEASAEPEESNESTTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNW--WWDSEDTSSNNL 306 (521)
T ss_pred ccccchhccccccccCCCceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcc--cccCCCCceEEE
Confidence 3455778899999886 4567999999999887665555543 011123467889
Q ss_pred eeeec
Q 002470 859 FVFDA 863 (918)
Q Consensus 859 FvFda 863 (918)
||+|.
T Consensus 307 yVLD~ 311 (521)
T PF09826_consen 307 YVLDE 311 (521)
T ss_pred EEECC
Confidence 99973
No 73
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.02 E-value=99 Score=34.78 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=60.5
Q ss_pred CccEEEEeccCCCCcccccccccccc-ceeeEEeecCCc----cccceeeccCCCCccccccccccc----cccc-cccc
Q 002470 567 SGRYVVAASAGNSLDSGFCSWDFYTK-DVRAFHIEGEGK----TTSRTVLGPLPNNNIYRRNAFSSV----LVPE-THQW 636 (918)
Q Consensus 567 SgryVVAASAGntldsgFCSWDfYsk-~v~Afh~e~~s~----~~Srt~L~pL~nn~~~rrN~~s~~----~~~e-~~qW 636 (918)
+||||+. .|=+.|..||. ..|-=....+.. +..|.|..--.+.-..-+|..... .++- ..+=
T Consensus 43 ngr~v~V--------~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~I 114 (443)
T PF04053_consen 43 NGRFVLV--------CGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKI 114 (443)
T ss_dssp TSSEEEE--------EETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEE
T ss_pred CCCEEEE--------EcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceE
Confidence 8899887 33346777772 112111111111 244555544333323324444333 2332 3445
Q ss_pred eeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccc-cEEEeecceeeeeecC
Q 002470 637 WYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRG-KLVVAEAETISLWDVN 706 (918)
Q Consensus 637 WYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrg-KvViAe~e~islWDVn 706 (918)
++ |+||+-..+. .|.+||+..|..|.+=++.+ |-. +-|..-| .|.++...+|.+++.+
T Consensus 115 f~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~~-vk~------V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 115 FG---GNLLGVKSSD--FICFYDWETGKLIRRIDVSA-VKY------VIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp E----SSSEEEEETT--EEEEE-TTT--EEEEESS-E--EE------EEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred Ec---CcEEEEECCC--CEEEEEhhHcceeeEEecCC-CcE------EEEECCCCEEEEEeCCeEEEEEec
Confidence 55 9999988665 79999999999999888764 333 3466554 4566667777777654
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=44.01 E-value=3.9e+02 Score=27.68 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=35.0
Q ss_pred cceeeeccc--ccceeEEEEccCCceEEEEeeccceeeeccCCccceecccc-EEEeec----ceeeeeecCCCCcc
Q 002470 642 GPLIASAAS--SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGK-LVVAEA----ETISLWDVNSLNPQ 711 (918)
Q Consensus 642 GPLl~StaS--~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgK-vViAe~----e~islWDVnSL~pq 711 (918)
|-.|+-+.. ....|.+||+..|....--... .+.++ ..|...|+ ++++.. -.|-+||+++-..+
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----~~~~~--~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREKVASFP----GMNGA--PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----CCccc--eEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 444443332 3367999999998653211111 12222 45777786 444422 25888888764433
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=43.87 E-value=89 Score=34.97 Aligned_cols=170 Identities=20% Similarity=0.283 Sum_probs=108.7
Q ss_pred ecCCCcceeeccCc---cccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccceeeEE
Q 002470 522 HDDGSCSYYDITNC---EDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDVRAFH 598 (918)
Q Consensus 522 HdDgsCSyyDiAN~---EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v~Afh 598 (918)
--||+...|||-|. .-|+.+.-+..| ---||. -|| --|.++++-+.+- =||.-|-.++.+.
T Consensus 47 SWD~tVR~wevq~~g~~~~ka~~~~~~Pv----L~v~Ws-----ddg---skVf~g~~Dk~~k----~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPV----LDVCWS-----DDG---SKVFSGGCDKQAK----LWDLASGQVSQVA 110 (347)
T ss_pred ccCCceEEEEEecCCcccchhhhccCCCe----EEEEEc-----cCC---ceEEeeccCCceE----EEEccCCCeeeee
Confidence 35999999999985 346665544433 344664 355 4455555544432 4888888777766
Q ss_pred eecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEeeccceeee
Q 002470 599 IEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTM 678 (918)
Q Consensus 599 ~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M 678 (918)
.-++...+-|.+=+++ --++-|.|--+++|.||.|---.||.=+.-.-|.+|
T Consensus 111 ~Hd~pvkt~~wv~~~~----------------------------~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~ 162 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMN----------------------------YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA 162 (347)
T ss_pred ecccceeEEEEecCCC----------------------------cceeEecccccceeecccCCCCeeeeeeccceeeeh
Confidence 6666444443332221 125678999999999999999999999999999999
Q ss_pred ccCCccceeccccEEEeecc-eeeeeec-CCCCcceeeeeecCCceeEEEEee-cccccccCccceee
Q 002470 679 DYSSPLQWRNRGKLVVAEAE-TISLWDV-NSLNPQTLLSVSSCGRKISALHVN-NTDAELGGGVRQRV 743 (918)
Q Consensus 679 ~YSSPlQWRnrgKvViAe~e-~islWDV-nSL~pq~llsV~~~Gkki~aLHV~-NtDAE~gGGVRQRv 743 (918)
|---|| +|||-+| .|-++.. |.-+-+-.+.-+| --+++|+-.. +-|-.+=|++-=||
T Consensus 163 Dv~~pm-------~vVata~r~i~vynL~n~~te~k~~~SpL-k~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 163 DVLYPM-------AVVATAERHIAVYNLENPPTEFKRIESPL-KWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred hccCce-------eEEEecCCcEEEEEcCCCcchhhhhcCcc-cceeeEEEEEecCCceEeeeecceE
Confidence 998887 5777666 4777776 5544444444333 4456665443 33444445443333
No 76
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.34 E-value=82 Score=36.52 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=87.9
Q ss_pred CCCce--eecCCceeeeeecCCcccccccccCCCccce----eeecCCeEEEeeeeeccccccCCcccceeceeccceee
Q 002470 750 GNDGV--FCTPDSINILDFRHPAGIGLKIPKFGVNAQS----VFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLM 823 (918)
Q Consensus 750 gnDGv--fcT~dsiNvlDFR~PsGIGlKip~~g~~~qS----vfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv 823 (918)
-|+|- |....+=|+.=+-.-||+=|++= ..--|+ +|+.-|++||-...--.-..-+.+..|+++.=+
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~----- 162 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH----- 162 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-----
Confidence 56664 45556778888888898877653 444555 499999999977766666666666777776544
Q ss_pred eeeecCCCCcccccccceeeecCCceeeeeeccceeeeecccccCCccccccccccccceeecCCCCCCCCCcccccceE
Q 002470 824 NTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQSFASDNSSIQKVREIIGPDDLFAPSFDYLASRV 903 (918)
Q Consensus 824 ~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d~~q~~~~D~~~~~~vReviGpDDLy~PsFDy~sSrv 903 (918)
-..|..+-|.|-.+|| |+.+|.-|. ....|+.-.+.|..+-++=+--=|-+=+|||+-..+
T Consensus 163 --~~~p~~~f~~HtlsIT------Dl~ig~Gg~-----------~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av 223 (476)
T KOG0646|consen 163 --SVKPLHIFSDHTLSIT------DLQIGSGGT-----------NARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAV 223 (476)
T ss_pred --CccceeeeccCcceeE------EEEecCCCc-----------cceEEEecCCceEEEEEeccceeeEEEecCCcceeE
Confidence 4578889999999998 566555542 234555555666666666655566666777765554
Q ss_pred EE
Q 002470 904 LL 905 (918)
Q Consensus 904 LL 905 (918)
.|
T Consensus 224 ~l 225 (476)
T KOG0646|consen 224 AL 225 (476)
T ss_pred EE
Confidence 43
No 77
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=43.26 E-value=74 Score=34.96 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=43.1
Q ss_pred cceeEEEEccCCceEEEEeecc-ceeeeccCCccceeccccEEEeec-----------ceeeeeecCCCCcc
Q 002470 652 QRVVTVYDIRDGEQIMQWEVQK-PVLTMDYSSPLQWRNRGKLVVAEA-----------ETISLWDVNSLNPQ 711 (918)
Q Consensus 652 q~~V~~yDIRDGe~vMkWevqk-pV~~M~YSSPlQWRnrgKvViAe~-----------e~islWDVnSL~pq 711 (918)
...|+|+|...++++-.+.+-+ |-. | -|| .+..++||+. +.|++||+.+|.+-
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~P~~-~--~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFLPNP-V--VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCCCce-e--ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 3889999999999999999854 443 4 333 5678999998 99999999999865
No 78
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.81 E-value=32 Score=39.49 Aligned_cols=72 Identities=25% Similarity=0.490 Sum_probs=53.3
Q ss_pred cccEEEeecc-eeeeeecCCCCcceeeeeecCCceeEEEEeecccccc--cCccceeeccccccCCCceeecCCceeeee
Q 002470 689 RGKLVVAEAE-TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAEL--GGGVRQRVSSAEAEGNDGVFCTPDSINILD 765 (918)
Q Consensus 689 rgKvViAe~e-~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~--gGGVRQRvSSse~EgnDGvfcT~dsiNvlD 765 (918)
|+-|.=+.++ ++.||||+.=+|...+. -.|++|.+|-.+|--+++ .|+ -+-.|++.|
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p~~LLsGs------------------~D~~V~l~D 315 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSIT--HHGKKVQTLEWHPYEPSVLLSGS------------------YDGTVALKD 315 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehh--hcCCceeEEEecCCCceEEEecc------------------ccceEEeee
Confidence 3344444454 79999999998887665 679999999888877763 332 234689999
Q ss_pred ecCCcccccccccCC
Q 002470 766 FRHPAGIGLKIPKFG 780 (918)
Q Consensus 766 FR~PsGIGlKip~~g 780 (918)
-|.|+--|+++---|
T Consensus 316 ~R~~~~s~~~wk~~g 330 (463)
T KOG0270|consen 316 CRDPSNSGKEWKFDG 330 (463)
T ss_pred ccCccccCceEEecc
Confidence 999999998876544
No 79
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=42.25 E-value=86 Score=37.25 Aligned_cols=118 Identities=22% Similarity=0.344 Sum_probs=64.6
Q ss_pred eeecCCceeeeeecCCcccccccccCCCccceeeecC---CeEEEeeeeeccccccCCcccceeceeccceeeeeeecCC
Q 002470 754 VFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFSRG---DSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPE 830 (918)
Q Consensus 754 vfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfsrG---DsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPe 830 (918)
.|..++.|.=|||-- -.+.|+|.+-| ..+.++..-+.-+.+.-.-..+.+..|+ +
T Consensus 68 ~f~~~~~I~dLDWts-----------t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~-----------~ 125 (631)
T PF12234_consen 68 SFSEDDPIRDLDWTS-----------TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS-----------S 125 (631)
T ss_pred eecCCCceeeceeee-----------cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee-----------c
Confidence 467778888889863 12347777665 2222333233333332223344444443 2
Q ss_pred CCcccccccceeeecCCceeeeeeccceeeeecccccC---Cccccccc-cccccceeecCCCCCCCCCc
Q 002470 831 SNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDG---FQSFASDN-SSIQKVREIIGPDDLFAPSF 896 (918)
Q Consensus 831 sNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d~---~q~~~~D~-~~~~~vReviGpDDLy~PsF 896 (918)
|.-|.--.-+|+.....+-++|+.|||||-.-+.. +..+.+.. +-..-|...=||=-.|-|.|
T Consensus 126 ---~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~~~~~l~~~~~~~~~dl~~~v~~LngpLPvYHPqf 192 (631)
T PF12234_consen 126 ---HTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLDTSQSLGSRKILPNWDLFELVSRLNGPLPVYHPQF 192 (631)
T ss_pred ---CCCCCccceeEecCCeEEEEeCCEEEEECCCcCchhhccccccCccCCHHHHHHHhCCCCCCcCHHH
Confidence 33333334689999999999999999999876621 11111111 11233444556666666655
No 80
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=40.83 E-value=6.4 Score=41.51 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=48.7
Q ss_pred ccccCccceeecccccc-CCCceeecCCceeeeeecCC-------------cccccccccCCCccceeeec-------CC
Q 002470 733 AELGGGVRQRVSSAEAE-GNDGVFCTPDSINILDFRHP-------------AGIGLKIPKFGVNAQSVFSR-------GD 791 (918)
Q Consensus 733 AE~gGGVRQRvSSse~E-gnDGvfcT~dsiNvlDFR~P-------------sGIGlKip~~g~~~qSvfsr-------GD 791 (918)
.||+||+||||-=+-|= .+-.|+--+|-.+-||+++= .|+..=+--|+.|-..-|++ |-
T Consensus 137 ~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 137 DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred cccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 48999999999765542 45578888999999999863 47777777888887777765 55
Q ss_pred eEEEeee
Q 002470 792 SIFLGCC 798 (918)
Q Consensus 792 sVf~G~t 798 (918)
-+..|..
T Consensus 217 i~a~G~p 223 (258)
T COG1120 217 IVAQGTP 223 (258)
T ss_pred EEeecCc
Confidence 5555543
No 81
>PF06841 Phage_T4_gp19: T4-like virus tail tube protein gp19; InterPro: IPR010667 This family consists of several tail tube protein gp19 sequences from the T4-like viruses [,]. The contractile tail of bacteriophage T4 consists of a contractile sheath, a tube and a baseplate. Protomers of Gp19 form the tail tube, which penetrates the outer membrane of Escherichia coli upon infection.; GO: 0005198 structural molecule activity
Probab=40.68 E-value=1.5e+02 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.510 Sum_probs=24.4
Q ss_pred eeccccceeeecccccceeEEEEccCCceEEEEeeccce
Q 002470 637 WYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPV 675 (918)
Q Consensus 637 WYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV 675 (918)
|++=|-.=-...+...-.|.++| ++|..+++|++++..
T Consensus 68 W~~~~~~~~~~~~~~~~~I~lld-~~~~~~~~w~~~~a~ 105 (134)
T PF06841_consen 68 WFNAINNGESNSARKDISIELLD-SDGKPVARWNFRNAF 105 (134)
T ss_pred HHHHHhccccccccceEEEEEEC-CCCCEEEEEEEEeEE
Confidence 44444332223335666788888 566899999999854
No 82
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.07 E-value=7.1 Score=41.37 Aligned_cols=17 Identities=53% Similarity=0.773 Sum_probs=14.4
Q ss_pred cccccCccceeeccccc
Q 002470 732 DAELGGGVRQRVSSAEA 748 (918)
Q Consensus 732 DAE~gGGVRQRvSSse~ 748 (918)
=.||+||+||||.-+-+
T Consensus 128 P~qLSGGMrQRVaiARA 144 (248)
T COG1116 128 PHQLSGGMRQRVAIARA 144 (248)
T ss_pred ccccChHHHHHHHHHHH
Confidence 35899999999987766
No 83
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=39.72 E-value=89 Score=34.52 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=49.7
Q ss_pred cccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeee------cCCc
Q 002470 648 AASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVS------SCGR 721 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~------~~Gk 721 (918)
+++....|.++|..+|+.+-+.++..++ +++|+-|-..|+++|+-..-. ..+=++-++-|+ ..|-
T Consensus 411 ~g~~dG~l~ald~~tG~~lW~~~~~~~~----~a~P~~~~~~g~~yv~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~ 481 (488)
T cd00216 411 AGAADGYFRAFDATTGKELWKFRTPSGI----QATPMTYEVNGKQYVGVMVGG-----GGSFPTGMGGVAKLDRWTAMGG 481 (488)
T ss_pred EECCCCeEEEEECCCCceeeEEECCCCc----eEcCEEEEeCCEEEEEEEecC-----CccccccccccchhcccCCCCC
Confidence 4457789999999999999888776555 578999988999999855332 222233333333 4677
Q ss_pred eeEEEE
Q 002470 722 KISALH 727 (918)
Q Consensus 722 ki~aLH 727 (918)
+|+++|
T Consensus 482 ~~~~~~ 487 (488)
T cd00216 482 YIIAFS 487 (488)
T ss_pred EEEEEE
Confidence 777776
No 84
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.06 E-value=1.1e+02 Score=37.58 Aligned_cols=60 Identities=22% Similarity=0.456 Sum_probs=47.6
Q ss_pred cceeeecccccceeEEEEccCCceEEEEeec-cceeeeccCCccceeccccEEEeecc--eeeeeecCC
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWEVQ-KPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNS 707 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWevq-kpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnS 707 (918)
|--||-.+++...+-||+-+----|||=.-. .-+.+|+||+ -|.++++++| .|.+||+.|
T Consensus 319 GDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp------Dgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 319 GDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP------DGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred CCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC------CCcEEEeccCCCcEEEEeccC
Confidence 4447888888888999999998889985422 3467888886 5778898888 599999998
No 85
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=39.04 E-value=12 Score=30.43 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=9.9
Q ss_pred hhhhhccCCcch
Q 002470 355 EELEARLFPHHK 366 (918)
Q Consensus 355 dELEaRlfPHhk 366 (918)
=|+=.|+|||||
T Consensus 5 idiL~rvFP~~k 16 (39)
T PF03474_consen 5 IDILTRVFPHQK 16 (39)
T ss_pred HHHHHHHCCCCC
Confidence 366789999998
No 86
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=38.93 E-value=7.7 Score=41.46 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=34.1
Q ss_pred EEeecccccccCccceeecccccc-CCCceeecCCceeeee-------------ecCCcccccccccCCCcc
Q 002470 726 LHVNNTDAELGGGVRQRVSSAEAE-GNDGVFCTPDSINILD-------------FRHPAGIGLKIPKFGVNA 783 (918)
Q Consensus 726 LHV~NtDAE~gGGVRQRvSSse~E-gnDGvfcT~dsiNvlD-------------FR~PsGIGlKip~~g~~~ 783 (918)
-|.+--+-|++||||||+.-+-|= .|-=++-.+|.|-.|| ++.=-|+..-|=.|+..+
T Consensus 101 ~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v 172 (268)
T COG4608 101 EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV 172 (268)
T ss_pred HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh
Confidence 355667789999999999877651 1222233344444443 344446666666666443
No 87
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.06 E-value=56 Score=39.54 Aligned_cols=68 Identities=22% Similarity=0.427 Sum_probs=50.2
Q ss_pred eccccceeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeecc--eeeeeecCCCCc
Q 002470 638 YKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNP 710 (918)
Q Consensus 638 YrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~p 710 (918)
.-||| .|++|+.--..|+||||..|-.+-...= --||-+..| -|.+=| ++.+++.. .+.+||.++-.+
T Consensus 113 ~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F-~~~~~~---~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 113 FDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLF-HPHWNR---WLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred EcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEe-CCccch---hheeecCCCceEEEEEcccCch
Confidence 35899 8889999999999999998887777765 445555554 455444 55555543 689999997776
No 88
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=37.36 E-value=37 Score=31.23 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred hhhhhhhccccchhhhhhhHHhhHhhhhcCCCCcchhhhhhhHHHHhh
Q 002470 255 KLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISG 302 (918)
Q Consensus 255 KLHEKLAfLEGkVkrIAsDIKkTKEMLD~NNPD~sK~ILSdIQ~kIsg 302 (918)
.|.+=.+.|++.|+...++.+++-+-| ..|||.|. .|.++|.+|+.
T Consensus 8 ~l~~v~~~~~~~a~~~~~~l~~Al~~l-~~~pdnP~-~LA~~Qa~l~e 53 (80)
T PRK15326 8 YLDDVSAKFDTGVDNLQTQVTEALDKL-AAKPSDPA-LLAAYQSKLSE 53 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHH-HHHHHHHHHHH
Confidence 477778899999999999999988777 68899985 57888888764
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=36.01 E-value=7.6e+02 Score=28.76 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred eccccceeeecccccceeEEEEccCCceEEEEe-eccceeee------ccCCccceeccccEEEeecc---eeeeeecCC
Q 002470 638 YKPCGPLIASAASSQRVVTVYDIRDGEQIMQWE-VQKPVLTM------DYSSPLQWRNRGKLVVAEAE---TISLWDVNS 707 (918)
Q Consensus 638 YrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWe-vqkpV~~M------~YSSPlQWRnrgKvViAe~e---~islWDVnS 707 (918)
|-|=-|.|+.|.+.-.-|.|||.---...-+=- --+|=+.+ .|+ |-|-.--+--++.+- +|.+||||.
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g--lsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYG--LSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccc--cccccccceeEeeccCCCcEEEEeccc
Q ss_pred CCcceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecC-CcccccccccCCCcccee
Q 002470 708 LNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRH-PAGIGLKIPKFGVNAQSV 786 (918)
Q Consensus 708 L~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~-PsGIGlKip~~g~~~qSv 786 (918)
-.-. ++-+.+..+++-+--.=-=|.=-+..... =|-.|-+--+.|.|-|. ++=..+-.+.|+..+.|+
T Consensus 210 ~~~~--------~~~~~p~~~~~~h~~~VeDV~~h~~h~~l---F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 210 ESKE--------DKVVDPKTIFSGHEDVVEDVAWHPLHEDL---FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred cccC--------CccccceEEeecCCcceehhhccccchhh---heeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Q ss_pred -eecCCeEEEeeeeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceee-e-cCCceeeeeeccc--eeee
Q 002470 787 -FSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQV-W-GNSNLVMGISGEG--LFVF 861 (918)
Q Consensus 787 -fsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQV-W-GnSn~Vm~~cG~G--LFvF 861 (918)
|..=+.-.|.+.+.- ..|+-|-||+=+. |.--.-.|-.+|.|| | =+-+.|+|.+|.. |-|.
T Consensus 279 ~fnp~~~~ilAT~S~D--------~tV~LwDlRnL~~------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 279 AFNPFNEFILATGSAD--------KTVALWDLRNLNK------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred EeCCCCCceEEeccCC--------CcEEEeechhccc------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Q ss_pred ecccccCCcc
Q 002470 862 DALSNDGFQS 871 (918)
Q Consensus 862 da~~~d~~q~ 871 (918)
|.-+-..-|+
T Consensus 345 Dls~ig~eq~ 354 (422)
T KOG0264|consen 345 DLSRIGEEQS 354 (422)
T ss_pred eccccccccC
No 90
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=35.96 E-value=84 Score=36.65 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=64.9
Q ss_pred eeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecce--eeeeec----CCCCcceeeeee
Q 002470 644 LIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAET--ISLWDV----NSLNPQTLLSVS 717 (918)
Q Consensus 644 Ll~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~--islWDV----nSL~pq~llsV~ 717 (918)
||+|.+.+ -|-+||+|---.+-+|-.|--|-+...+.-|+=+ .+-.|.++ +-+||- +|-+|+|+-+|.
T Consensus 359 l~~~~~~G--eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~----ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 359 LLASGGTG--EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS----YLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEcCCc--eEEEEecCCcceEEEEeecCccceeeeeecCCCc----eEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 55665555 7999999999999999999999888887666533 66666665 678884 467899999887
Q ss_pred cCCceeEEEEeecccccc
Q 002470 718 SCGRKISALHVNNTDAEL 735 (918)
Q Consensus 718 ~~Gkki~aLHV~NtDAE~ 735 (918)
-.--.|+-|-. |-||++
T Consensus 433 NLtt~Itsl~F-n~d~qi 449 (514)
T KOG2055|consen 433 NLTTAITSLQF-NHDAQI 449 (514)
T ss_pred hhheeeeeeee-Ccchhh
Confidence 76777777754 567764
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=35.82 E-value=50 Score=36.35 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=46.1
Q ss_pred cccccceeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee--cceeeeeecC
Q 002470 631 PETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE--AETISLWDVN 706 (918)
Q Consensus 631 ~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe--~e~islWDVn 706 (918)
+++.-|| .+ -|=++.|||+-++|.+||||-|.-+..=+...-=.-..||+| |+-++++ -+-|.+-|+-
T Consensus 67 vdql~w~-~~-~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~------g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 67 VDQLCWD-PK-HPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPD------GEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hhhheeC-CC-CCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCC------CCEEEEecCcccEEEEEec
Confidence 4556666 33 455556788899999999999988877776666566666655 4444443 3567777764
No 92
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=35.02 E-value=17 Score=33.92 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=11.4
Q ss_pred cccccccccceeeEEeecCCc
Q 002470 584 FCSWDFYTKDVRAFHIEGEGK 604 (918)
Q Consensus 584 FCSWDfYsk~v~Afh~e~~s~ 604 (918)
||+||||.=|..+=.+-.|..
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~ 22 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLN 22 (107)
T ss_dssp EEEE-STT---EE---EESSS
T ss_pred EEEEEeeceeeecccceeCCC
Confidence 999999999888776666644
No 93
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=34.82 E-value=97 Score=36.69 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=59.3
Q ss_pred ccceeccccceeeecccccceeEEEEccCCceEEEEeec-----------------------------------cceeee
Q 002470 634 HQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQ-----------------------------------KPVLTM 678 (918)
Q Consensus 634 ~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevq-----------------------------------kpV~~M 678 (918)
+.-=|-|---.|+++||-.++|++||+.---.+|.|.-+ +-+-.+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 556788888999999999999999999998899999643 223345
Q ss_pred ccCCccc---eeccccEEEeecc--eeeeeecCCCCcceee
Q 002470 679 DYSSPLQ---WRNRGKLVVAEAE--TISLWDVNSLNPQTLL 714 (918)
Q Consensus 679 ~YSSPlQ---WRnrgKvViAe~e--~islWDVnSL~pq~ll 714 (918)
.|+-||- +-.-|-..+|+.- -|-+||.-++ |||+-
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-k~Pv~ 287 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-KAPVA 287 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccC-CCCce
Confidence 6777763 5566777777653 4678898886 44443
No 94
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.74 E-value=72 Score=33.44 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=34.2
Q ss_pred ccceeceeccceeeeeeecCCCCccccc----ccceeeecCC---ceeeeeec-cceeeeecccccCC
Q 002470 810 SQVQQFSLRKQRLMNTYSLPESNAHSYH----SAITQVWGNS---NLVMGISG-EGLFVFDALSNDGF 869 (918)
Q Consensus 810 s~vqq~SlRk~~Lv~tYslPesNah~h~----saItQVWGnS---n~Vm~~cG-~GLFvFda~~~d~~ 869 (918)
.+|=+|.|+.++|+.+|.||+.-++..- ..|--.=++. =+.|+=+| -||.|+|-....+-
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~ 101 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW 101 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE
Confidence 5788999999999999999998887211 1111111111 11222222 59999998876653
No 95
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=33.23 E-value=17 Score=28.06 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.1
Q ss_pred CCccccccccccc
Q 002470 579 SLDSGFCSWDFYT 591 (918)
Q Consensus 579 tldsgFCSWDfYs 591 (918)
.-|-.-|+||||+
T Consensus 12 P~D~S~y~WDF~~ 24 (28)
T PF08076_consen 12 PSDKSIYHWDFCS 24 (28)
T ss_pred CCccceeehhhhh
Confidence 3466789999996
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.89 E-value=56 Score=37.85 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=38.6
Q ss_pred cccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecce
Q 002470 648 AASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAET 699 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~ 699 (918)
+++--+-|||||+-|=.+|-.|.+..|||.|+-|- -+..+++|.+.
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~------dd~t~viGmsn 300 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP------DDQTVVIGMSN 300 (487)
T ss_pred ecccccceEEEEccceEEEEeeecccceeeEEecC------CCceEEEeccc
Confidence 45678899999999999999999999999999875 45666666654
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.79 E-value=86 Score=36.44 Aligned_cols=62 Identities=23% Similarity=0.530 Sum_probs=46.9
Q ss_pred eeeecccccceeEEEEccCCceEEEEee-ccceeeeccCCccceeccccEEEeecceeeeeecCCCC
Q 002470 644 LIASAASSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLN 709 (918)
Q Consensus 644 Ll~StaS~q~~V~~yDIRDGe~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~ 709 (918)
||.-|.+.+..|++||+..+..+.++.. .-||-++.||--=-|- +|-|+-.++.+||..-|.
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L----at~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL----ATAADDGSVKLWDLRKLK 422 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE----EEEecCCeEEEEEehhhc
Confidence 7888999999999999999999998876 3578887777544441 233344459999987665
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.75 E-value=7.1e+02 Score=27.44 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=36.4
Q ss_pred ccccceeeeccc--ccceeEEEEccCCceEE-EEeeccceeeeccCCccceeccccEEEeecc-----eeeeeecCCCCc
Q 002470 639 KPCGPLIASAAS--SQRVVTVYDIRDGEQIM-QWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-----TISLWDVNSLNP 710 (918)
Q Consensus 639 rPCGPLl~StaS--~q~~V~~yDIRDGe~vM-kWevqkpV~~M~YSSPlQWRnrgKvViAe~e-----~islWDVnSL~p 710 (918)
-|.|-.|+-++. +...+-++|+.+|+... .|+ -.|.....|...|+.++.-.. .|-++|..+-.+
T Consensus 314 SpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-------g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 314 HPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-------GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-------CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 588987776554 33456667888886431 121 123333478888876554322 344456554433
Q ss_pred c
Q 002470 711 Q 711 (918)
Q Consensus 711 q 711 (918)
+
T Consensus 387 ~ 387 (448)
T PRK04792 387 Q 387 (448)
T ss_pred E
Confidence 3
No 99
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=32.20 E-value=12 Score=40.85 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=22.0
Q ss_pred cccccCccceeecccccc-CCCceeecCCceeeeee
Q 002470 732 DAELGGGVRQRVSSAEAE-GNDGVFCTPDSINILDF 766 (918)
Q Consensus 732 DAE~gGGVRQRvSSse~E-gnDGvfcT~dsiNvlDF 766 (918)
=++|+|||||||.=.-|= .+--||--+|-.--||-
T Consensus 131 P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa 166 (338)
T COG3839 131 PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166 (338)
T ss_pred cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhH
Confidence 378999999999865441 23345555555544453
No 100
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=32.13 E-value=2.9e+02 Score=28.62 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=37.7
Q ss_pred cccceeeeccc--ccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec-c----eeeeeecCCC
Q 002470 640 PCGPLIASAAS--SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-E----TISLWDVNSL 708 (918)
Q Consensus 640 PCGPLl~StaS--~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~-e----~islWDVnSL 708 (918)
|.|-.|+.+.. +...|-++|+..|+.. +. ...-.|..-..|-..|+.++... + .|-+||+.+-
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l-----~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL-----TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEE-Ee-----ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 78887765543 3346777888877632 11 11224444557887887665433 2 6888887763
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.09 E-value=1.9e+02 Score=32.92 Aligned_cols=157 Identities=24% Similarity=0.380 Sum_probs=93.4
Q ss_pred hhcccccccccceeeecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCC----ccEEEE
Q 002470 498 LNEIGQRTSTGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCS----GRYVVA 573 (918)
Q Consensus 498 l~~iG~K~stgGWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcS----gryVVA 573 (918)
|.|--.-++..-|++. |.-++-|--|-+--.||+-..|.- -+-++-.+ .-- -|| -|.||.
T Consensus 268 ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v---~~LtGHd~-ELt-----------HcstHptQrLVvT 331 (481)
T KOG0300|consen 268 LTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVV---NILTGHDS-ELT-----------HCSTHPTQRLVVT 331 (481)
T ss_pred eeccccceEehhhhcC-cceeeeeeccccceeeeeccCcee---ccccCcch-hcc-----------ccccCCcceEEEE
Confidence 3343444556677764 677778888999999998655421 11111111 111 233 489999
Q ss_pred eccCCCCccccccccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccc
Q 002470 574 ASAGNSLDSGFCSWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQR 653 (918)
Q Consensus 574 ASAGntldsgFCSWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~ 653 (918)
+| .|.-|-=|||- ..+.+.-+-.|-+-+ ++|.+...+- - +-..|..+
T Consensus 332 sS----rDtTFRLWDFR-eaI~sV~VFQGHtdt-----------------VTS~vF~~dd----------~-vVSgSDDr 378 (481)
T KOG0300|consen 332 SS----RDTTFRLWDFR-EAIQSVAVFQGHTDT-----------------VTSVVFNTDD----------R-VVSGSDDR 378 (481)
T ss_pred ec----cCceeEeccch-hhcceeeeecccccc-----------------eeEEEEecCC----------c-eeecCCCc
Confidence 87 68889999997 555554444442211 1111111111 1 23467889
Q ss_pred eeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCceeEEEEee
Q 002470 654 VVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVN 729 (918)
Q Consensus 654 ~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~ 729 (918)
+|||||+|. ...|.+.+--+||..=-+ | -.-+++..++-..++|+.+-.|
T Consensus 379 TvKvWdLrN--------MRsplATIRtdS~~NRva-----v-------------s~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 379 TVKVWDLRN--------MRSPLATIRTDSPANRVA-----V-------------SKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEEEeeecc--------ccCcceeeecCCccceeE-----e-------------ecCCceEEeccCCceEEEEecC
Confidence 999999996 357999999999974221 1 1235556666666666666544
No 102
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=31.70 E-value=14 Score=39.13 Aligned_cols=17 Identities=53% Similarity=0.732 Sum_probs=13.4
Q ss_pred cccccCccceeeccccc
Q 002470 732 DAELGGGVRQRVSSAEA 748 (918)
Q Consensus 732 DAE~gGGVRQRvSSse~ 748 (918)
-.+|+||+||||-=+-.
T Consensus 127 P~~LSGGqRQRvALARc 143 (231)
T COG3840 127 PGELSGGQRQRVALARC 143 (231)
T ss_pred ccccCchHHHHHHHHHH
Confidence 36899999999976543
No 103
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.54 E-value=13 Score=39.69 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=20.2
Q ss_pred ccccCccceeeccccccCCCceeecCCceeeee
Q 002470 733 AELGGGVRQRVSSAEAEGNDGVFCTPDSINILD 765 (918)
Q Consensus 733 AE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlD 765 (918)
.|++|||||||.=+-| +++.-.+=|||
T Consensus 140 ~eLSGGQ~QRiaIARA------L~~~PklLIlD 166 (252)
T COG1124 140 HELSGGQRQRIAIARA------LIPEPKLLILD 166 (252)
T ss_pred hhcChhHHHHHHHHHH------hccCCCEEEec
Confidence 4899999999988777 55555555555
No 104
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=31.28 E-value=20 Score=27.54 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.1
Q ss_pred CCCccccccccccc
Q 002470 578 NSLDSGFCSWDFYT 591 (918)
Q Consensus 578 ntldsgFCSWDfYs 591 (918)
|.-|-..|-||||.
T Consensus 11 ~psdksi~hwdf~~ 24 (28)
T PRK14751 11 NPSDKSIYHWDFYA 24 (28)
T ss_pred CCCcCceeeeeehh
Confidence 45577889999994
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.19 E-value=38 Score=39.89 Aligned_cols=122 Identities=22% Similarity=0.384 Sum_probs=75.3
Q ss_pred ccceeEEEEccCCceEEEEeeccceeeeccCCcccee--------ccccEEEeecceeeeeecCCCCcceeeeeecCCce
Q 002470 651 SQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWR--------NRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRK 722 (918)
Q Consensus 651 ~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWR--------nrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkk 722 (918)
+.+.||||||--- +-..||.-+|---|=.|- .|.-+|=.|+-++++||.-+-+|.--.-..+++--
T Consensus 438 GkgcVKVWdis~p------g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 438 GKGCVKVWDISQP------GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred CCCeEEEeeccCC------CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchh
Confidence 4578999999654 556777777655443332 23334556778999999999888777777788888
Q ss_pred eEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCCcccee--eecCCeEEEe
Q 002470 723 ISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSV--FSRGDSIFLG 796 (918)
Q Consensus 723 i~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSv--fsrGDsVf~G 796 (918)
-|||-+ |-||-|- . --||+--|-|.|.++-+=++ .|+-|--.+.+| --+|--++-|
T Consensus 512 CyALa~-spDakvc------F----------sccsdGnI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 512 CYALAI-SPDAKVC------F----------SCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred hhhhhc-CCcccee------e----------eeccCCcEEEEEcccceeee-cccCCCCCceeEEecCCCceeecC
Confidence 888876 5676542 0 12455556677777665443 234333333333 2334444443
No 106
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.14 E-value=14 Score=40.42 Aligned_cols=52 Identities=29% Similarity=0.386 Sum_probs=29.7
Q ss_pred cccCccceeecccccc-CCCceeecCCceeeee-------------ecCCcccccccccCCCccce
Q 002470 734 ELGGGVRQRVSSAEAE-GNDGVFCTPDSINILD-------------FRHPAGIGLKIPKFGVNAQS 785 (918)
Q Consensus 734 E~gGGVRQRvSSse~E-gnDGvfcT~dsiNvlD-------------FR~PsGIGlKip~~g~~~qS 785 (918)
|++||+||||-=+-+= .+--++-.+|----|| .+.-.|.++=|=+|+..+-+
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva 218 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVA 218 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 8999999999765541 2222333333333333 33345777777777755443
No 107
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=30.49 E-value=1.2e+02 Score=33.62 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=47.1
Q ss_pred eeecccccceeEEEEccCCc---------------------------------eEEEEeeccceeeeccCCccceecccc
Q 002470 645 IASAASSQRVVTVYDIRDGE---------------------------------QIMQWEVQKPVLTMDYSSPLQWRNRGK 691 (918)
Q Consensus 645 l~StaS~q~~V~~yDIRDGe---------------------------------~vMkWevqkpV~~M~YSSPlQWRnrgK 691 (918)
|+-+++...+|.+||.|.+- .+.+|...--+|+.+|-+-. =-
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~-----~s 268 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASV-----IS 268 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccc-----cc
Confidence 55566777888888887541 23346666556666654410 01
Q ss_pred EEEeecceeeeeecCCCCcceeeeeecCCceeEEEEeecccccc
Q 002470 692 LVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAEL 735 (918)
Q Consensus 692 vViAe~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~ 735 (918)
.++-+---=++-++.||-|..-|||++-.-.=.|| |--||||.
T Consensus 269 ~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~l-Vcgtd~ea 311 (319)
T KOG4714|consen 269 SWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCL-VCGTDAEA 311 (319)
T ss_pred ccccCCcccceEeeeccccccceeeeeeeccCceE-Eeccccce
Confidence 11111111233467788888888887754433333 45566664
No 108
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=30.17 E-value=1.5e+02 Score=33.82 Aligned_cols=186 Identities=27% Similarity=0.389 Sum_probs=116.2
Q ss_pred ceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeec---CCceeEEEEee
Q 002470 653 RVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSS---CGRKISALHVN 729 (918)
Q Consensus 653 ~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~---~Gkki~aLHV~ 729 (918)
|..|+++++-+-.|-.--...|||+.-. ||-.+||.=.|+|-++|.+-+. .||++.. .++-+.||-+|
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~Vrm-------Nr~RLvV~Lee~IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRM-------NRKRLVVCLEESIYIYDIKDMK--LLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEE-------ccceEEEEEcccEEEEecccce--eehhhhccCCCccceEeeccC
Confidence 7899999999999999999999999763 8999999999999999999775 4666544 45668887777
Q ss_pred cccc-------cccCccc-------eeeccccc-c--------CCCc--------------eeecCCceeeeeecCCccc
Q 002470 730 NTDA-------ELGGGVR-------QRVSSAEA-E--------GNDG--------------VFCTPDSINILDFRHPAGI 772 (918)
Q Consensus 730 NtDA-------E~gGGVR-------QRvSSse~-E--------gnDG--------------vfcT~dsiNvlDFR~PsGI 772 (918)
|-.+ --.|-|. |-|+--+| + ..|| ||++++-==+.-||-
T Consensus 139 ~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---- 214 (391)
T KOG2110|consen 139 NANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---- 214 (391)
T ss_pred CCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC----
Confidence 6311 1123332 22222221 1 1122 455555555555553
Q ss_pred ccccccCCCccceeee---cCCeEEEeeeeecccc---------------------ccC---------Ccccceeceecc
Q 002470 773 GLKIPKFGVNAQSVFS---RGDSIFLGCCNVRSTG---------------------KKQ---------PSSQVQQFSLRK 819 (918)
Q Consensus 773 GlKip~~g~~~qSvfs---rGDsVf~G~t~~~~~~---------------------k~q---------~~s~vqq~SlRk 819 (918)
|...-+|+| .=|+=||+|++..-|+ +.. ..+||.+. +-+
T Consensus 215 -------G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~-~~~ 286 (391)
T KOG2110|consen 215 -------GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV-LDQ 286 (391)
T ss_pred -------CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh-hhh
Confidence 322222222 2366688887654321 000 01356565 677
Q ss_pred ceeeeeeecCCCCcccccccceeeecCCceeeeeeccceeee
Q 002470 820 QRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVF 861 (918)
Q Consensus 820 ~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvF 861 (918)
.|=++|-.||+++ +.|.-+..|+- +-..|+.|+--|-|..
T Consensus 287 ~R~FAt~~l~~s~-~~~~~~l~~~~-~~~~v~vas~dG~~y~ 326 (391)
T KOG2110|consen 287 SRKFATAKLPESG-RKNICSLSSIQ-KIPRVLVASYDGHLYS 326 (391)
T ss_pred ccceeEEEccCCC-ccceEEeeccC-CCCEEEEEEcCCeEEE
Confidence 8889999999998 44444444332 3367888888887654
No 109
>PRK03629 tolB translocation protein TolB; Provisional
Probab=29.99 E-value=2.9e+02 Score=30.03 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=37.9
Q ss_pred ccccceeeecccccceeEEE--EccCCceEE-EEeeccceeeeccCCccceeccccEEEeec-----ceeeeeecCCCCc
Q 002470 639 KPCGPLIASAASSQRVVTVY--DIRDGEQIM-QWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-----ETISLWDVNSLNP 710 (918)
Q Consensus 639 rPCGPLl~StaS~q~~V~~y--DIRDGe~vM-kWevqkpV~~M~YSSPlQWRnrgKvViAe~-----e~islWDVnSL~p 710 (918)
-|.|-.|+.+........+| |+..|+... .|+ ..+..-..|-..|+.++.-. ..|-+||+.+-..
T Consensus 295 SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 295 FPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 69999887766544444555 666665421 221 12223456777887654422 3477888766554
Q ss_pred ce
Q 002470 711 QT 712 (918)
Q Consensus 711 q~ 712 (918)
+.
T Consensus 368 ~~ 369 (429)
T PRK03629 368 QV 369 (429)
T ss_pred EE
Confidence 43
No 110
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.86 E-value=85 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=20.7
Q ss_pred cccceeEEEEccCCceEEEEeeccce
Q 002470 650 SSQRVVTVYDIRDGEQIMQWEVQKPV 675 (918)
Q Consensus 650 S~q~~V~~yDIRDGe~vMkWevqkpV 675 (918)
+....|.++|.++|+++-+.+...++
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred CCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 67789999999999998666665544
No 111
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=29.77 E-value=5.4e+02 Score=26.42 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=60.6
Q ss_pred ceeEEEEccCCceEEE---EeeccceeeeccCCccceeccccEEEeec-ceeeeeecCCCCcceeeeeecCCceeEEEEe
Q 002470 653 RVVTVYDIRDGEQIMQ---WEVQKPVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQTLLSVSSCGRKISALHV 728 (918)
Q Consensus 653 ~~V~~yDIRDGe~vMk---WevqkpV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq~llsV~~~Gkki~aLHV 728 (918)
..|.+|++...+.+++ |..+-.|..|.-. +..++|+.+ ++|.|+-++. .++.|.-|+-.-....+.++
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-------~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-------KNYILVGDAMKSVSLLRYDE-ENNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-------TTEEEEEESSSSEEEEEEET-TTE-EEEEEEESS-BEEEEE
T ss_pred CEEEEEEccCcccchhhheecceEEEEEEecc-------ccEEEEEEcccCEEEEEEEc-cCCEEEEEEecCCCccEEEE
Confidence 6788999999993333 3333333333322 446777764 8899886655 55555555543333333222
Q ss_pred ecccccccCccceeeccccc--cCCCceeecCCceeeeeecCCcccccccccC-CCccceeeecCCeE
Q 002470 729 NNTDAELGGGVRQRVSSAEA--EGNDGVFCTPDSINILDFRHPAGIGLKIPKF-GVNAQSVFSRGDSI 793 (918)
Q Consensus 729 ~NtDAE~gGGVRQRvSSse~--EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~-g~~~qSvfsrGDsV 793 (918)
+. .+ |.+++++..=|++=|+.|.-.....-.. -...-+-|.-||.|
T Consensus 179 ------------------~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v 227 (321)
T PF03178_consen 179 ------------------EFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV 227 (321)
T ss_dssp ------------------EEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred ------------------EEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence 22 13 4888888888988888874333222221 22334556666654
No 112
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=29.38 E-value=17 Score=38.47 Aligned_cols=13 Identities=46% Similarity=1.104 Sum_probs=11.4
Q ss_pred Ccccccccccccc
Q 002470 580 LDSGFCSWDFYTK 592 (918)
Q Consensus 580 ldsgFCSWDfYsk 592 (918)
+.++||+||+|.+
T Consensus 229 ~sp~F~~W~~Y~~ 241 (254)
T COG5426 229 LSPQFCEWDGYGT 241 (254)
T ss_pred CChhhcccccHHH
Confidence 6789999999975
No 113
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=29.00 E-value=1.3e+02 Score=35.77 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=59.8
Q ss_pred eecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCceeEE
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISA 725 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkki~a 725 (918)
+-|+|.-+++|+||+-++..|-.|-...-|.-|--. .-|.|---+.|----+|.+.+.+-.. +|+.+.=--|-|.|
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG--~lWqkd~lItVSl~G~in~ln~~d~~--~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG--CLWQKDHLITVSLSGTINYLNPSDPS--VLKVISGHNKSITA 325 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEE--EEEeCCeEEEEEcCcEEEEecccCCC--hhheecccccceeE
Confidence 357889999999999999999999887775555433 34776555666667789999888665 66666666677777
Q ss_pred EEee
Q 002470 726 LHVN 729 (918)
Q Consensus 726 LHV~ 729 (918)
|-|+
T Consensus 326 Ltv~ 329 (603)
T KOG0318|consen 326 LTVS 329 (603)
T ss_pred EEEc
Confidence 7553
No 114
>COG5345 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.34 E-value=22 Score=39.24 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.5
Q ss_pred hhhhccccchhhhhhhHHhhHhhhhcCCC
Q 002470 258 EKLTFLEGKVKRIQSDIKRTKEMLDMNNP 286 (918)
Q Consensus 258 EKLAfLEGkVkrIAsDIKkTKEMLD~NNP 286 (918)
..+..|-+.|+|||+||+.|.+.|-+--|
T Consensus 226 ~Radnlvq~vdria~digntsail~erae 254 (358)
T COG5345 226 QRADNLVQFVDRIATDIGNTSAILPERAE 254 (358)
T ss_pred HHHHHHHHHHHHHHhccCChHHhCccccc
Confidence 34556778899999999999999976554
No 115
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=27.86 E-value=1e+02 Score=35.93 Aligned_cols=100 Identities=21% Similarity=0.409 Sum_probs=71.2
Q ss_pred cccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceecc-ccEEEeec--ceeeeeecCCCC-------
Q 002470 640 PCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNR-GKLVVAEA--ETISLWDVNSLN------- 709 (918)
Q Consensus 640 PCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnr-gKvViAe~--e~islWDVnSL~------- 709 (918)
+||--++ +||.-+.+|+||..-|.++-+.+..+++....|- -. -+++|||. -.|..||..+=.
T Consensus 268 ~~g~~fL-S~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~------pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 268 NCGTSFL-SASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH------PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred ccCCeee-eeecceeeeeeccccceEEEEEecCCCceeeecC------CCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 5776655 5789999999999999999999999998877653 23 38888886 368899988732
Q ss_pred -cceeeeeecCCceeEEEEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccc
Q 002470 710 -PQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIG 773 (918)
Q Consensus 710 -pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIG 773 (918)
-++++++.+- -+-||=||+||.- +|=|.|||-|.=|-
T Consensus 341 hLg~i~~i~F~-----------------~~g~rFissSDdk----------s~riWe~~~~v~ik 378 (503)
T KOG0282|consen 341 HLGAILDITFV-----------------DEGRRFISSSDDK----------SVRIWENRIPVPIK 378 (503)
T ss_pred hhhheeeeEEc-----------------cCCceEeeeccCc----------cEEEEEcCCCccch
Confidence 2233332221 1346778888762 77788888777664
No 116
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.65 E-value=55 Score=39.75 Aligned_cols=45 Identities=29% Similarity=0.530 Sum_probs=41.1
Q ss_pred eecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEE
Q 002470 512 VSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWI 557 (918)
Q Consensus 512 VsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWi 557 (918)
-.-|.-..|+|.||+.|.- =+|-|||..---|.+-.+++|+-||-
T Consensus 141 tnDGqylalG~~nGTIsiR-Nk~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIR-NKNGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred cCCCcEEEEeccCceEEee-cCCCCcceEEeCCCCCCCCceEEEec
Confidence 4678899999999999988 67889999999999999999999995
No 117
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.07 E-value=70 Score=27.56 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=38.0
Q ss_pred hhhhhhhhccccchhhhhhhHHhhHhhhhcCCCCcchhhhhhhHHHHhh
Q 002470 254 SKLHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISG 302 (918)
Q Consensus 254 SKLHEKLAfLEGkVkrIAsDIKkTKEMLD~NNPD~sK~ILSdIQ~kIsg 302 (918)
..|++++..|+..+.++..=|.-+.++|+.+||-+--+.-..|.+.+..
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~ 123 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQN 123 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999998886654444444444433
No 118
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=27.02 E-value=49 Score=36.78 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=47.7
Q ss_pred eeecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCcccccccccc
Q 002470 511 FVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFY 590 (918)
Q Consensus 511 FVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfY 590 (918)
|.--|.++.-.-||++|..|||---.+-++|.+++-+.+-+=-+ =--|||++.|. ..|-.-=.||--
T Consensus 237 ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~---------FS~SGRlLfag----y~d~~c~vWDtl 303 (343)
T KOG0286|consen 237 FFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA---------FSKSGRLLFAG----YDDFTCNVWDTL 303 (343)
T ss_pred EccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE---------EcccccEEEee----ecCCceeEeecc
Confidence 33458888889999999999999989999999887654422100 01378888774 234444468865
Q ss_pred ccc
Q 002470 591 TKD 593 (918)
Q Consensus 591 sk~ 593 (918)
.-+
T Consensus 304 k~e 306 (343)
T KOG0286|consen 304 KGE 306 (343)
T ss_pred ccc
Confidence 444
No 119
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=26.96 E-value=4.3e+02 Score=30.63 Aligned_cols=186 Identities=23% Similarity=0.325 Sum_probs=0.0
Q ss_pred eeeeeecCCCCcceeeeee-----cCCceeEEEEeecccccccCccce------eeccccccCCCceeecCCc-------
Q 002470 699 TISLWDVNSLNPQTLLSVS-----SCGRKISALHVNNTDAELGGGVRQ------RVSSAEAEGNDGVFCTPDS------- 760 (918)
Q Consensus 699 ~islWDVnSL~pq~llsV~-----~~Gkki~aLHV~NtDAE~gGGVRQ------RvSSse~EgnDGvfcT~ds------- 760 (918)
+|.+||+.+ -|.++|+. .-|-+|+--|-|=--|-.++=|+= .|=-.-+-|=-||+|-.--
T Consensus 174 tikIwDlat--g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~ 251 (460)
T KOG0285|consen 174 TIKIWDLAT--GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV 251 (460)
T ss_pred eeEEEEccc--CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Q ss_pred -------eeeeeecCCcccccccccCCCccceeeec--CCeEEEeeeeecc-----------------------------
Q 002470 761 -------INILDFRHPAGIGLKIPKFGVNAQSVFSR--GDSIFLGCCNVRS----------------------------- 802 (918)
Q Consensus 761 -------iNvlDFR~PsGIGlKip~~g~~~qSvfsr--GDsVf~G~t~~~~----------------------------- 802 (918)
+-|.|.|.-.-| .-++-|...+.+|+-+ --.|+.|+....-
T Consensus 252 t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK 330 (460)
T ss_pred ecCCcceEEEeeecccceE-EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc
Q ss_pred --ccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeeeeecc--ceeeeecccccCCccccccccc
Q 002470 803 --TGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGE--GLFVFDALSNDGFQSFASDNSS 878 (918)
Q Consensus 803 --~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~--GLFvFda~~~d~~q~~~~D~~~ 878 (918)
+-.-...--+.||.+-+|.++...+. |-+-|--+=+|||=||-+-|- .|+..|.-..+..|.
T Consensus 331 e~~fASas~dnik~w~~p~g~f~~nlsg-------h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~------- 396 (460)
T KOG0285|consen 331 ENLFASASPDNIKQWKLPEGEFLQNLSG-------HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR------- 396 (460)
T ss_pred hhhhhccCCccceeccCCccchhhcccc-------ccceeeeeeeccCceEEEcCCceEEEEEecCcCccccc-------
Q ss_pred cccceeecCCCCC------CCCCcccccceEE
Q 002470 879 IQKVREIIGPDDL------FAPSFDYLASRVL 904 (918)
Q Consensus 879 ~~~vReviGpDDL------y~PsFDy~sSrvL 904 (918)
+.-+++|--| |+-.||-+++|.+
T Consensus 397 ---~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 397 ---GQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred ---ccccccCCccccccceeEEeecccCceEE
No 120
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.69 E-value=18 Score=38.38 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=20.7
Q ss_pred ccccCccceeeccccccCCC-ceeecCCceeeeee
Q 002470 733 AELGGGVRQRVSSAEAEGND-GVFCTPDSINILDF 766 (918)
Q Consensus 733 AE~gGGVRQRvSSse~EgnD-GvfcT~dsiNvlDF 766 (918)
.||+|||+|||-=+-|=-++ =++.-+|-.+=+|.
T Consensus 138 ~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~ 172 (254)
T COG1121 138 GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172 (254)
T ss_pred cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCH
Confidence 58999999999776662222 24444444444443
No 121
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.96 E-value=20 Score=39.74 Aligned_cols=93 Identities=27% Similarity=0.301 Sum_probs=53.2
Q ss_pred eecccccccCccceeeccccccC-CCceeecCCceeeeeecCCcccccccccCCCccceeee--------cCCeEEEeee
Q 002470 728 VNNTDAELGGGVRQRVSSAEAEG-NDGVFCTPDSINILDFRHPAGIGLKIPKFGVNAQSVFS--------RGDSIFLGCC 798 (918)
Q Consensus 728 V~NtDAE~gGGVRQRvSSse~Eg-nDGvfcT~dsiNvlDFR~PsGIGlKip~~g~~~qSvfs--------rGDsVf~G~t 798 (918)
-.+.-|+|+|||||||.=+-|=- +--|+-.+|+---||= .++|||.. .|=.|.+=
T Consensus 135 ~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP--------------~TT~sIL~LL~~In~~lglTIvlI-- 198 (339)
T COG1135 135 ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP--------------ETTQSILELLKDINRELGLTIVLI-- 198 (339)
T ss_pred hccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh--------------HHHHHHHHHHHHHHHHcCCEEEEE--
Confidence 35677999999999998776622 2234444555555552 34444432 22222221
Q ss_pred eeccccccCCcccceeceeccceeeeeeecCCCCcccccc
Q 002470 799 NVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHS 838 (918)
Q Consensus 799 ~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~s 838 (918)
+-.....+.-|.+| .-|-+|+|+-.=+.-+--+|+.|.
T Consensus 199 THEm~Vvk~ic~rV--avm~~G~lvE~G~v~~vF~~Pk~~ 236 (339)
T COG1135 199 THEMEVVKRICDRV--AVLDQGRLVEEGTVSEVFANPKHA 236 (339)
T ss_pred echHHHHHHHhhhh--eEeeCCEEEEeccHHHhhcCcchH
Confidence 22223344455555 346678888777777777777553
No 122
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.57 E-value=22 Score=37.99 Aligned_cols=56 Identities=32% Similarity=0.407 Sum_probs=34.9
Q ss_pred ccccCccceeeccccc--cCCCceeecCCceeeeeecCCccccccc-------------ccCCCccceeeec
Q 002470 733 AELGGGVRQRVSSAEA--EGNDGVFCTPDSINILDFRHPAGIGLKI-------------PKFGVNAQSVFSR 789 (918)
Q Consensus 733 AE~gGGVRQRvSSse~--EgnDGvfcT~dsiNvlDFR~PsGIGlKi-------------p~~g~~~qSvfsr 789 (918)
-||+||||||.=-+-+ ..-|=|| -+|..|=||..|-..|=+-+ --|+.|.-|.|++
T Consensus 134 d~LSGGQrQRAfIAMVlaQdTdyvl-LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD 204 (252)
T COG4604 134 DELSGGQRQRAFIAMVLAQDTDYVL-LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSD 204 (252)
T ss_pred HhcccchhhhhhhheeeeccCcEEE-ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhh
Confidence 3899999999754432 1112222 36788999998887764322 2356666666654
No 123
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=25.26 E-value=1.1e+02 Score=29.07 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=37.9
Q ss_pred cccccceeccccceeeecccccce--eEEEEccCCceEEEEeeccceeeeccCCcc
Q 002470 631 PETHQWWYKPCGPLIASAASSQRV--VTVYDIRDGEQIMQWEVQKPVLTMDYSSPL 684 (918)
Q Consensus 631 ~e~~qWWYrPCGPLl~StaS~q~~--V~~yDIRDGe~vMkWevqkpV~~M~YSSPl 684 (918)
|+...|=|+.||-|-+---..++. +++|||..+.+|..=|+- .+|+|..+-
T Consensus 19 p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY---~~f~y~~~r 71 (105)
T cd01205 19 PDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELY---DNFEYQQPR 71 (105)
T ss_pred CCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcc---cCcEEccCC
Confidence 456789999999887776555554 799999998777554443 678887764
No 124
>PLN00165 hypothetical protein; Provisional
Probab=25.19 E-value=7.9 Score=35.90 Aligned_cols=22 Identities=45% Similarity=1.028 Sum_probs=17.4
Q ss_pred EEEEeccC---CCCccccccccccc
Q 002470 570 YVVAASAG---NSLDSGFCSWDFYT 591 (918)
Q Consensus 570 yVVAASAG---ntldsgFCSWDfYs 591 (918)
++||||-| .-.|.|+|-|+|=-
T Consensus 8 w~vAaSvgaVEalkDQG~cRwny~l 32 (88)
T PLN00165 8 WIVAASVGAVEALKDQGFCRWNYTL 32 (88)
T ss_pred HHHHHHHHHHhhccccCeeehhhHH
Confidence 56788877 45789999999854
No 125
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=24.83 E-value=3.8e+02 Score=29.13 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=48.2
Q ss_pred ceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc-eeeeeecCCCCcceeeeeec
Q 002470 643 PLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNSLNPQTLLSVSS 718 (918)
Q Consensus 643 PLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnSL~pq~llsV~~ 718 (918)
=|++-+......|.|.|....+++.+.++-..+-+..+.||= .-.++|+..+ .|++||..+.. -+-+|..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D----gr~~yv~~rdg~vsviD~~~~~--~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD----GRYLYVANRDGTVSVIDLATGK--VVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTSSS--EEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC----CCEEEEEcCCCeEEEEECCccc--EEEEEec
Confidence 467778888899999999999999999997665555555541 1236777644 89999999876 4444444
No 126
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.72 E-value=23 Score=38.89 Aligned_cols=16 Identities=56% Similarity=0.746 Sum_probs=13.0
Q ss_pred ccccCccceeeccccc
Q 002470 733 AELGGGVRQRVSSAEA 748 (918)
Q Consensus 733 AE~gGGVRQRvSSse~ 748 (918)
.||+|||+|||--.-|
T Consensus 134 ~eLSGGQQQRVGv~RA 149 (309)
T COG1125 134 HELSGGQQQRVGVARA 149 (309)
T ss_pred hhcCcchhhHHHHHHH
Confidence 5899999999975544
No 127
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=24.62 E-value=77 Score=36.56 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=46.9
Q ss_pred ccChh-hhhhhhccccchhhhhhhHHhhHhhhhcCCCCcchhhhhhhHHHHhhHHhhhcc
Q 002470 251 KFPSK-LHEKLTFLEGKVKRIQSDIKRTKEMLDMNNPDATKLILSDIQEKISGIEKAMGN 309 (918)
Q Consensus 251 KYpSK-LHEKLAfLEGkVkrIAsDIKkTKEMLD~NNPD~sK~ILSdIQ~kIsgIEKAm~h 309 (918)
-|.+| |--+|-.+|-+|++...||-|.|+||+-|--| +|.-+-+|.++.+.-+++..
T Consensus 405 g~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd--~v~s~~lqe~L~ev~~~Las 462 (486)
T KOG2185|consen 405 GPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGD--LVVSEALQERLKEVRKALAS 462 (486)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHHHHHHHHH
Confidence 35556 77788889999999999999999999999985 56777788888877777654
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.53 E-value=7e+02 Score=31.23 Aligned_cols=210 Identities=25% Similarity=0.417 Sum_probs=122.6
Q ss_pred cccceeeecCceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccc
Q 002470 506 STGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFC 585 (918)
Q Consensus 506 stgGWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFC 585 (918)
-||==|---|-+||-+--||+.+-||+-+---=.-|-.|.-+.- .|=-+- =||-.|+|++ .|
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf----scvavD------~sGelV~AG~----~d---- 456 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF----SCVAVD------PSGELVCAGA----QD---- 456 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee----eEEEEc------CCCCEEEeec----cc----
Confidence 45666778899999999999999999988765556666654433 243332 3667777653 22
Q ss_pred cccccccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCC-c
Q 002470 586 SWDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDG-E 664 (918)
Q Consensus 586 SWDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDG-e 664 (918)
+++.| -.-++-| -.|--|.+--. ..+.+ =+.|=|-+|+| +|-.++|++|||=+- -
T Consensus 457 ~F~If-----vWS~qTG------qllDiLsGHEg----PVs~l--------~f~~~~~~LaS-~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 457 SFEIF-----VWSVQTG------QLLDILSGHEG----PVSGL--------SFSPDGSLLAS-GSWDKTVRIWDIFSSSG 512 (893)
T ss_pred eEEEE-----EEEeecC------eeeehhcCCCC----cceee--------EEccccCeEEe-ccccceEEEEEeeccCc
Confidence 22222 2222222 12222332200 00110 13455666665 688999999999875 3
Q ss_pred eEEEEeeccceeeeccCCccceecccc-EEEeecc-eeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCcccee
Q 002470 665 QIMQWEVQKPVLTMDYSSPLQWRNRGK-LVVAEAE-TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQR 742 (918)
Q Consensus 665 ~vMkWevqkpV~~M~YSSPlQWRnrgK-vViAe~e-~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQR 742 (918)
+|---++.+-|++..+ |--|| |-||-++ -|.|||++.-- ..-+..|||=. --|-+.+-|
T Consensus 513 ~vEtl~i~sdvl~vsf------rPdG~elaVaTldgqItf~d~~~~~----q~~~IdgrkD~---------~~gR~~~D~ 573 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSF------RPDGKELAVATLDGQITFFDIKEAV----QVGSIDGRKDL---------SGGRKETDR 573 (893)
T ss_pred eeeeEeeccceeEEEE------cCCCCeEEEEEecceEEEEEhhhce----eeccccchhhc---------cccccccce
Confidence 5667788888888765 44565 6688888 89999998532 22233344311 111122223
Q ss_pred ecccccc----------CCCc--eeecCCceeeeeecCCccccccc
Q 002470 743 VSSAEAE----------GNDG--VFCTPDSINILDFRHPAGIGLKI 776 (918)
Q Consensus 743 vSSse~E----------gnDG--vfcT~dsiNvlDFR~PsGIGlKi 776 (918)
.++--++ --|| +++--+|=||-=+-+|.||=+|-
T Consensus 574 ~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred eehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 3322111 1233 56666777777777888887763
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=24.22 E-value=88 Score=38.42 Aligned_cols=97 Identities=25% Similarity=0.356 Sum_probs=57.0
Q ss_pred eecccccceeEEEEccCCceEEE-----------EeeccceeeeccCCccceeccccEEE-eecceeeeeecCC-CCcce
Q 002470 646 ASAASSQRVVTVYDIRDGEQIMQ-----------WEVQKPVLTMDYSSPLQWRNRGKLVV-AEAETISLWDVNS-LNPQT 712 (918)
Q Consensus 646 ~StaS~q~~V~~yDIRDGe~vMk-----------WevqkpV~~M~YSSPlQWRnrgKvVi-Ae~e~islWDVnS-L~pq~ 712 (918)
+|.--....+-|||+||=.-|-| |.|.+--.-|. ++|-|---+|-.+- .+-.+|.|||..+ .|-|-
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~-~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v 417 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVH-SPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV 417 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccccc-CcccccCCccceeEecCCCcEEEeecccccccce
Confidence 34555667788999999554432 66654332222 44555556666544 3567999999987 22232
Q ss_pred ---------eeeeecCCceeEEEEeecccccccCccceeecccc
Q 002470 713 ---------LLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAE 747 (918)
Q Consensus 713 ---------llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse 747 (918)
|+.+....-..-++| ||++|+|-|--+|+-+
T Consensus 418 yrRNils~~l~ki~y~d~~~q~~~----d~~~~~fdka~~s~~d 457 (1080)
T KOG1408|consen 418 YRRNILSANLSKIPYEDSTQQIMH----DASAGIFDKALVSTCD 457 (1080)
T ss_pred eecccchhhhhcCccccCchhhhh----hccCCcccccchhhcC
Confidence 222222222233444 8999999887766544
No 130
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=23.10 E-value=5.1e+02 Score=29.09 Aligned_cols=140 Identities=22% Similarity=0.459 Sum_probs=78.5
Q ss_pred ecCceEEe-eecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccc
Q 002470 513 SEGESVLL-AHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYT 591 (918)
Q Consensus 513 sEGE~vLL-AHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYs 591 (918)
+|-|.+|+ |--|++...||+.|++-+.-|..-++.-.- =+-..||- ..||+| .|.-.-=||.-.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t--------~~vSpDGs-----lcasGg--kdg~~~LwdL~~ 223 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNT--------VTVSPDGS-----LCASGG--KDGEAMLWDLNE 223 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEE--------EEECCCCC-----EEecCC--CCceEEEEEccC
Confidence 45466555 678999999999999999888763332110 01222331 223332 233333455433
Q ss_pred cceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccCCceEEEEee
Q 002470 592 KDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV 671 (918)
Q Consensus 592 k~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev 671 (918)
++. |--|+.+...+. +...+++.| |.+.|+.+ |++||...+..|-.-
T Consensus 224 ~k~----------------lysl~a~~~v~s-----l~fspnryw-------L~~at~~s---IkIwdl~~~~~v~~l-- 270 (315)
T KOG0279|consen 224 GKN----------------LYSLEAFDIVNS-----LCFSPNRYW-------LCAATATS---IKIWDLESKAVVEEL-- 270 (315)
T ss_pred Cce----------------eEeccCCCeEee-----EEecCCcee-------EeeccCCc---eEEEeccchhhhhhc--
Confidence 332 334444432222 222333444 55666665 999999999888643
Q ss_pred ccceeeeccCCc-----------cceeccccEEEeec--ceeeeeec
Q 002470 672 QKPVLTMDYSSP-----------LQWRNRGKLVVAEA--ETISLWDV 705 (918)
Q Consensus 672 qkpV~~M~YSSP-----------lQWRnrgKvViAe~--e~islWDV 705 (918)
..|..+| |-|-++|--..|+. -.|.+|-|
T Consensus 271 -----~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 271 -----KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred -----cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 3344444 67777777777764 34666655
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.98 E-value=79 Score=39.60 Aligned_cols=58 Identities=31% Similarity=0.709 Sum_probs=40.5
Q ss_pred eeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccCCc------cceecc--ccEEEee----cceeeeee
Q 002470 637 WYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSP------LQWRNR--GKLVVAE----AETISLWD 704 (918)
Q Consensus 637 WYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSP------lQWRnr--gKvViAe----~e~islWD 704 (918)
|-|-=-=.|+|+.++ ..+.|||+|- ++||+.|.|.++ |+|--. -.|++|- +-+|-+||
T Consensus 169 WNrkvqhILAS~s~s-g~~~iWDlr~---------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPS-GRAVIWDLRK---------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred cchhhhHHhhccCCC-CCceeccccC---------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 444444456666554 4567999996 467888888877 888644 4677774 44899999
No 132
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.84 E-value=1.1e+03 Score=26.34 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=80.7
Q ss_pred ecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeec-ceeeeeecCCCCcceeeeeecCCceeEE
Q 002470 647 SAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQTLLSVSSCGRKISA 725 (918)
Q Consensus 647 StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq~llsV~~~Gkki~a 725 (918)
-+++.+..|-++|.++|+.+.+-++. -..|.++ | +.|++... -+..+.+.+ .++.+....-+|.|
T Consensus 305 ~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~-~------~~vyv~~~~~~~~~~~~~-----~~~~~~~~~G~l~A 370 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYD-P------GLVYLGAFHIPLGLPPQK-----KKRCKKPGKGGLAA 370 (488)
T ss_pred EEECCCceEEEEECCCCcEeeEeEee--ccccccC-C------ceEEEccccccccCcccc-----cCCCCCCCceEEEE
Confidence 34567888999999999988766654 2334443 4 66766432 122222221 11222233346777
Q ss_pred EEeecccccccCccceeeccccccCCCceeecCCceeeeeecCCcccccccccCCC--ccceeeecCCeEEEeeeeeccc
Q 002470 726 LHVNNTDAELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHPAGIGLKIPKFGV--NAQSVFSRGDSIFLGCCNVRST 803 (918)
Q Consensus 726 LHV~NtDAE~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~PsGIGlKip~~g~--~~qSvfsrGDsVf~G~t~~~~~ 803 (918)
|+..+-. ++=+...... . .+ ...|. ...++-.-|+.||+|+..+
T Consensus 371 lD~~tG~------~~W~~~~~~~--~---~~--------------------~~~g~~~~~~~~~~~g~~v~~g~~dG--- 416 (488)
T cd00216 371 LDPKTGK------VVWEKREGTI--R---DS--------------------WNIGFPHWGGSLATAGNLVFAGAADG--- 416 (488)
T ss_pred EeCCCCc------EeeEeeCCcc--c---cc--------------------cccCCcccCcceEecCCeEEEECCCC---
Confidence 7653311 1111110000 0 00 01111 1123445789999998654
Q ss_pred cccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeeeeecc
Q 002470 804 GKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGE 856 (918)
Q Consensus 804 ~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~ 856 (918)
.|--|..+.|+++-.|.||. ..+-++|+=+=+.-=+|..++|-
T Consensus 417 -------~l~ald~~tG~~lW~~~~~~---~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 417 -------YFRAFDATTGKELWKFRTPS---GIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred -------eEEEEECCCCceeeEEECCC---CceEcCEEEEeCCEEEEEEEecC
Confidence 46667788899999999863 44555654333555556666663
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=22.67 E-value=1.4e+02 Score=34.97 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=85.4
Q ss_pred CceEEeeecCCCcceeeccCccccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccccccce
Q 002470 515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDV 594 (918)
Q Consensus 515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v 594 (918)
=.-||++--||+..|-|+-+.-+-.+|.-- +-...||+-||-..+-
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~----------------------------------~d~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLD----------------------------------TDNIWFSSLDFSAESR 292 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcC----------------------------------ccceeeeeccccCCCc
Confidence 356899999999999999988887777532 4456788888855443
Q ss_pred eeEEeecCCccccceeeccCCCC-ccccccccccccccccccceeccccceeeecccccceeEEEEccCCc-----eEEE
Q 002470 595 RAFHIEGEGKTTSRTVLGPLPNN-NIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGE-----QIMQ 668 (918)
Q Consensus 595 ~Afh~e~~s~~~Srt~L~pL~nn-~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe-----~vMk 668 (918)
.-+-.+.-+ .-.++..-.++. ...+| ....- -.-==.-||=|-++.|||-..++++||.|.=- .+-.
T Consensus 293 ~vl~~~~~G--~f~~iD~R~~~s~~~~~~--lh~kK---I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst 365 (498)
T KOG4328|consen 293 SVLFGDNVG--NFNVIDLRTDGSEYENLR--LHKKK---ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST 365 (498)
T ss_pred cEEEeeccc--ceEEEEeecCCccchhhh--hhhcc---cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence 322222211 111111111221 01111 00000 00011358999999999999999999999511 2333
Q ss_pred EeeccceeeeccCCccceeccccEEEeecc-eeeeeecC
Q 002470 669 WEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVN 706 (918)
Q Consensus 669 WevqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVn 706 (918)
-+-.++|-+ +|-||.- |.||-...+ .|.|||+.
T Consensus 366 ~~HrrsV~s-AyFSPs~----gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 366 LPHRRSVNS-AYFSPSG----GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccccceeee-eEEcCCC----CceEeeccCCceEEeecc
Confidence 344445544 5667764 557776665 48888884
No 134
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.38 E-value=25 Score=37.59 Aligned_cols=16 Identities=56% Similarity=0.763 Sum_probs=13.3
Q ss_pred ccccCccceeeccccc
Q 002470 733 AELGGGVRQRVSSAEA 748 (918)
Q Consensus 733 AE~gGGVRQRvSSse~ 748 (918)
.||+||+||||--+-|
T Consensus 131 ~qLSGGmrQRvGiARA 146 (259)
T COG4525 131 WQLSGGMRQRVGIARA 146 (259)
T ss_pred EeecchHHHHHHHHHH
Confidence 4799999999976655
No 135
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=22.35 E-value=27 Score=40.40 Aligned_cols=187 Identities=21% Similarity=0.290 Sum_probs=96.2
Q ss_pred ccccccccceeeEEeecCCc--cccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEccC
Q 002470 585 CSWDFYTKDVRAFHIEGEGK--TTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRD 662 (918)
Q Consensus 585 CSWDfYsk~v~Afh~e~~s~--~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRD 662 (918)
-|.|.|.-|+.|.-=|.||- -+.+++|+=||.++..+- +.++..-.. -||.-+-... -.||-
T Consensus 29 isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~--sg~i~f~G~---------dll~~se~~l-----r~iRG 92 (534)
T COG4172 29 ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHP--SGSILFDGE---------DLLAASERQL-----RGVRG 92 (534)
T ss_pred ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCc--cceeEEcCh---------hhhcCCHHHH-----hhhcc
Confidence 46788888888887777754 377889999998755443 222221000 0111111111 23455
Q ss_pred CceEEEEeeccceeeec--------cCCccceeccccEEEeecceeeeeecCCCCcceeeeeecCCceeEEEEeeccccc
Q 002470 663 GEQIMQWEVQKPVLTMD--------YSSPLQWRNRGKLVVAEAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAE 734 (918)
Q Consensus 663 Ge~vMkWevqkpV~~M~--------YSSPlQWRnrgKvViAe~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE 734 (918)
...-|- .|.|.-++. -.-+|-|-.+..=--|.++.|.+.+- .-++-+.+++.+. --|
T Consensus 93 ~~I~MI--FQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~--------VgI~~p~~rl~~y-----PHe 157 (534)
T COG4172 93 NKIGMI--FQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLEL--------VGIPEPEKRLDAY-----PHE 157 (534)
T ss_pred cceEEE--ecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--------cCCCchhhhhhhC-----Ccc
Confidence 554453 355543332 00111222211112233333333321 2223334444332 248
Q ss_pred ccCccceeeccccccCCC-ceeecCCceeeeeecC-------------CcccccccccCCCccc-------eeeecCCeE
Q 002470 735 LGGGVRQRVSSAEAEGND-GVFCTPDSINILDFRH-------------PAGIGLKIPKFGVNAQ-------SVFSRGDSI 793 (918)
Q Consensus 735 ~gGGVRQRvSSse~EgnD-GvfcT~dsiNvlDFR~-------------PsGIGlKip~~g~~~q-------SvfsrGDsV 793 (918)
|+||+||||--+-|--|+ -++-.+|---.||-.+ --|++.-|=+|+.++- .|..+|..|
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999877664443 2444555555555544 3477777777775543 455667777
Q ss_pred EEeeeeecc
Q 002470 794 FLGCCNVRS 802 (918)
Q Consensus 794 f~G~t~~~~ 802 (918)
=-|.|..-+
T Consensus 238 E~~~t~~lF 246 (534)
T COG4172 238 ETGTTETLF 246 (534)
T ss_pred ecCcHHHHh
Confidence 667665544
No 136
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=22.32 E-value=4.2e+02 Score=30.04 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=78.9
Q ss_pred cceeeecccccceeEEEEccCCceEEEEee-----ccceeeeccCCccceeccccEE-EeecceeeeeecCCCCcceeee
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWEV-----QKPVLTMDYSSPLQWRNRGKLV-VAEAETISLWDVNSLNPQTLLS 715 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWev-----qkpV~~M~YSSPlQWRnrgKvV-iAe~e~islWDVnSL~pq~lls 715 (918)
-|-++-|.|-..+.+||||.-| +.--=++ .|+|.-.+|+- -.+.-.+ |.+--++.++|..+|+--.+.-
T Consensus 162 dp~~igtSSiDTTCTiWdie~~-~~~~vkTQLIAHDKEV~DIaf~~----~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETG-VSGTVKTQLIAHDKEVYDIAFLK----GSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred CcceeEeecccCeEEEEEEeec-cccceeeEEEecCcceeEEEecc----CccceEEEecCCCcEEEEEecccccceEEe
Confidence 4668899999999999999998 2222233 38888888875 2222222 2234589999999997544321
Q ss_pred eecCCceeEEEEeecccccccCccceeeccccccCCC-ceee-cCCceeeeeecCCcccccccccCCCcccee
Q 002470 716 VSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGND-GVFC-TPDSINILDFRHPAGIGLKIPKFGVNAQSV 786 (918)
Q Consensus 716 V~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~EgnD-Gvfc-T~dsiNvlDFR~PsGIGlKip~~g~~~qSv 786 (918)
=.-. +++- -+|++-..-+.|- ..|. -.--|=|||.|+|.-.=..+-.|++.++.|
T Consensus 237 E~p~-----------~~~p-----LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI 293 (364)
T KOG0290|consen 237 EDPS-----------PSTP-----LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI 293 (364)
T ss_pred cCCC-----------CCCc-----ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce
Confidence 1100 0111 2466555444431 1111 134578999999999989999999888876
No 137
>PRK04922 tolB translocation protein TolB; Provisional
Probab=22.30 E-value=6.8e+02 Score=27.06 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred ccccceeeeccccc--ceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEee-cc----eeeeeecCCCCcc
Q 002470 639 KPCGPLIASAASSQ--RVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAE-AE----TISLWDVNSLNPQ 711 (918)
Q Consensus 639 rPCGPLl~StaS~q--~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe-~e----~islWDVnSL~pq 711 (918)
-|-|-.|+.+.... ..+-++|+..|+.. +-. ..-.|.....|-..|+.++.- .+ .|.+||..+-.++
T Consensus 300 spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt-----~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 300 APDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLT-----FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeE-Eee-----cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 57777776654332 23555566666531 111 112355556888888766542 22 4889998765554
Q ss_pred e
Q 002470 712 T 712 (918)
Q Consensus 712 ~ 712 (918)
.
T Consensus 374 ~ 374 (433)
T PRK04922 374 T 374 (433)
T ss_pred E
Confidence 3
No 138
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=22.22 E-value=26 Score=40.66 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=80.0
Q ss_pred ccccccccceeeEEeecCCc--cccceeeccCCC-CccccccccccccccccccceeccccceeeecccccceeEEEEcc
Q 002470 585 CSWDFYTKDVRAFHIEGEGK--TTSRTVLGPLPN-NNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIR 661 (918)
Q Consensus 585 CSWDfYsk~v~Afh~e~~s~--~~Srt~L~pL~n-n~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIR 661 (918)
+|.|.+.-|+.|.==|.|+- |..|+++|=++. .+...++-.. ..... =+.+
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~-------------------------~~~~ 363 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTG-------------------------GELR 363 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-ccccc-------------------------chhh
Confidence 67888999999988777764 788999886644 3333332221 00000 0122
Q ss_pred CCceEEEEeeccceeeeccCCccceecc------ccEEEeecce--eeeeecCCCCcceeeeeecCCceeEEEEeecccc
Q 002470 662 DGEQIMQWEVQKPVLTMDYSSPLQWRNR------GKLVVAEAET--ISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDA 733 (918)
Q Consensus 662 DGe~vMkWevqkpV~~M~YSSPlQWRnr------gKvViAe~e~--islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDA 733 (918)
....-|+--.|.|..+|.....+.|-=. +...-++... -.+.|---|.|. |.+--=.
T Consensus 364 ~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~---------------~l~ryP~ 428 (539)
T COG1123 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE---------------FLDRYPH 428 (539)
T ss_pred hhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH---------------HHhcCch
Confidence 3334455568999999988776665211 1111122111 111222222222 3334457
Q ss_pred cccCccceeecccccc-CCCceeecCCceeeeeecCCcc
Q 002470 734 ELGGGVRQRVSSAEAE-GNDGVFCTPDSINILDFRHPAG 771 (918)
Q Consensus 734 E~gGGVRQRvSSse~E-gnDGvfcT~dsiNvlDFR~PsG 771 (918)
|++|||||||.=+-|= .+--++-.+|.+--||-.+-..
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~ 467 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 9999999999766541 2334555567776666544433
No 139
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.07 E-value=1.2e+02 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.9
Q ss_pred cccccceeEEEEccCCceEEE
Q 002470 648 AASSQRVVTVYDIRDGEQIMQ 668 (918)
Q Consensus 648 taS~q~~V~~yDIRDGe~vMk 668 (918)
+++....+.++|.++|+++.+
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEE
Confidence 455679999999999998643
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=21.99 E-value=1.5e+02 Score=35.81 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred eeeecccccceeEEEEccCCceEEEEeeccceeeeccCCccceeccccEEEeecc------------eeeeeecCCCCcc
Q 002470 644 LIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE------------TISLWDVNSLNPQ 711 (918)
Q Consensus 644 Ll~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e------------~islWDVnSL~pq 711 (918)
+|||+.....++||||||----+.+ |-|...--|-.+ .=|..|-+-+.--- +|-+|++-||.--
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r---~ep~~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYR---QEPRGSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eeeeccCCCcceEEEeecccccccc---cCCCcccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Q ss_pred eeeeeecCCceeEEEEe
Q 002470 712 TLLSVSSCGRKISALHV 728 (918)
Q Consensus 712 ~llsV~~~Gkki~aLHV 728 (918)
|+-.++ |+.+.-+-|
T Consensus 307 P~~~~s--g~~~~sf~v 321 (720)
T KOG0321|consen 307 PVAEFS--GKLNSSFYV 321 (720)
T ss_pred chhhcc--Ccccceeee
No 141
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.83 E-value=23 Score=39.06 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=52.2
Q ss_pred ccccCccceeeccccccCC-CceeecCCceeeeeecC-------------CcccccccccCC-CccceeeecCCeEEEee
Q 002470 733 AELGGGVRQRVSSAEAEGN-DGVFCTPDSINILDFRH-------------PAGIGLKIPKFG-VNAQSVFSRGDSIFLGC 797 (918)
Q Consensus 733 AE~gGGVRQRvSSse~Egn-DGvfcT~dsiNvlDFR~-------------PsGIGlKip~~g-~~~qSvfsrGDsVf~G~ 797 (918)
+||+|||+|||-=+-|=-. -.|+-=+|..--||+.. =.||.-=+=+|+ +++-+ =.|.|
T Consensus 135 ~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~---msDrI---- 207 (352)
T COG3842 135 HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA---MSDRI---- 207 (352)
T ss_pred hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh---hccce----
Confidence 6899999999987776222 23444555555555432 123333333333 11111 01111
Q ss_pred eeeccccccCCcccceeceeccceeeeeeecCCCCcccccccceeeecCCceeee
Q 002470 798 CNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMG 852 (918)
Q Consensus 798 t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~ 852 (918)
--|++|++...++=-|--.++...-+.+.-|.+|++=|
T Consensus 208 -----------------~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l~~ 245 (352)
T COG3842 208 -----------------AVMNDGRIEQVGTPEEIYERPATRFVADFIGESNIFEG 245 (352)
T ss_pred -----------------EEccCCceeecCCHHHHhhCcchHHHHHHhCcceeeee
Confidence 12566666666665555556666667777777777655
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=21.35 E-value=7.3e+02 Score=26.90 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred ccccceeeecccccceeEEEEc--cCCceEEEEeeccceeeeccCCccceeccccEEEeec-c----eeeeeecCCCCcc
Q 002470 639 KPCGPLIASAASSQRVVTVYDI--RDGEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEA-E----TISLWDVNSLNPQ 711 (918)
Q Consensus 639 rPCGPLl~StaS~q~~V~~yDI--RDGe~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~-e----~islWDVnSL~pq 711 (918)
-|-|-.|+.+...-....+|.+ ..|+ +.+-. ..-.|....+|-..|+.++.-. + .|.+||+.+-..+
T Consensus 292 SpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt-----~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 292 SPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT-----FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe-----cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 5778877765432234455554 3443 21111 1123444568988888665432 2 5899998876554
Q ss_pred ee
Q 002470 712 TL 713 (918)
Q Consensus 712 ~l 713 (918)
.|
T Consensus 366 ~l 367 (427)
T PRK02889 366 AL 367 (427)
T ss_pred Ec
Confidence 44
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.33 E-value=1.1e+02 Score=35.26 Aligned_cols=84 Identities=27% Similarity=0.621 Sum_probs=53.2
Q ss_pred eeccccceeeecccccceeEEEEccCCceEEEEeeccceeeeccC----CccceeccccEEE---eecceeeeeecC---
Q 002470 637 WYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEVQKPVLTMDYS----SPLQWRNRGKLVV---AEAETISLWDVN--- 706 (918)
Q Consensus 637 WYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWevqkpV~~M~YS----SPlQWRnrgKvVi---Ae~e~islWDVn--- 706 (918)
|-|--+ |||| ..--++.+|||+|.=. -..||+...|- .-+.|+----=|| .+-+.|.+||..
T Consensus 310 Wnr~~~-lLas-G~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 310 WNRREP-LLAS-GGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ccCCcc-eeee-cCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 555554 6666 4578999999999632 22788888884 3367884333333 356899999962
Q ss_pred --------------CCCcceeeeeecCCceeEEEEee
Q 002470 707 --------------SLNPQTLLSVSSCGRKISALHVN 729 (918)
Q Consensus 707 --------------SL~pq~llsV~~~Gkki~aLHV~ 729 (918)
-|.|| ||-|--+-|-|--||--
T Consensus 382 D~ee~~~~a~~~L~dlPpQ-LLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQ-LLFVHQGQKEVKEVHWH 417 (440)
T ss_pred ChhhhccccccchhcCCce-eEEEecchhHhhhheec
Confidence 13333 55666655656656643
No 144
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=1.3e+03 Score=26.16 Aligned_cols=273 Identities=19% Similarity=0.263 Sum_probs=154.2
Q ss_pred eeecCceEEeeecCCCcceeeccCcc-ccceecCCCccCCCCccceEEEecCCCCCCCccEEEEeccCCCCccccccccc
Q 002470 511 FVSEGESVLLAHDDGSCSYYDITNCE-DKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDF 589 (918)
Q Consensus 511 FVsEGE~vLLAHdDgsCSyyDiAN~E-eKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDf 589 (918)
|-.-||-+|-.-+|-+...||.++.- .|.+|.+--++.. ++---.+= -|+.+|- =||
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~--------~~Fth~~~----~~i~sSt---------k~d- 79 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDL--------ACFTHHSN----TVIHSST---------KED- 79 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccE--------EEEecCCc----eEEEccC---------CCC-
Confidence 55678888887888899999999986 4666665444431 11111111 1333332 234
Q ss_pred cccceeeEEeecCCccccceeeccCCCCccccccccccccccccccceeccccceeeecccccceeEEEEcc-CCceEEE
Q 002470 590 YTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIR-DGEQIMQ 668 (918)
Q Consensus 590 Ysk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIR-DGe~vMk 668 (918)
..+|-.++.+- --||=.++- .+...++.. -|=+=-.+| +|--++|.+||+| ---|...
T Consensus 80 --~tIryLsl~dN------kylRYF~GH----~~~V~sL~~--------sP~~d~FlS-~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 80 --DTIRYLSLHDN------KYLRYFPGH----KKRVNSLSV--------SPKDDTFLS-SSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred --CceEEEEeecC------ceEEEcCCC----CceEEEEEe--------cCCCCeEEe-cccCCeEEeeEecCCCCceEE
Confidence 35566665543 345555554 111222211 022223444 4667899999999 4445555
Q ss_pred EeeccceeeeccCCccceeccccEEEe--ecceeeeeecCCCCcceeeeeecCCceeEEEEeecccccccCccceeeccc
Q 002470 669 WEVQKPVLTMDYSSPLQWRNRGKLVVA--EAETISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSA 746 (918)
Q Consensus 669 WevqkpV~~M~YSSPlQWRnrgKvViA--e~e~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSs 746 (918)
=-..+|+.|.|= -|=|..+ +.|.|.|+|+-|..--|..+..+.- |.-+ +..--
T Consensus 139 ~~~~~pi~AfDp--------~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~--------ew~~l 193 (311)
T KOG1446|consen 139 NLSGRPIAAFDP--------EGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------NDEA--------EWTDL 193 (311)
T ss_pred ecCCCcceeECC--------CCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------CCcc--------ceeee
Confidence 556678887763 3555444 4567999999999999988888752 1111 22222
Q ss_pred cccCCCc---eeecCCc-eeeeeecCCccc-----ccccccCCCccceeee-cCCeEEEeeeeeccccccCCcccceece
Q 002470 747 EAEGNDG---VFCTPDS-INILDFRHPAGI-----GLKIPKFGVNAQSVFS-RGDSIFLGCCNVRSTGKKQPSSQVQQFS 816 (918)
Q Consensus 747 e~EgnDG---vfcT~ds-iNvlDFR~PsGI-----GlKip~~g~~~qSvfs-rGDsVf~G~t~~~~~~k~q~~s~vqq~S 816 (918)
|- -||| ++||..+ |=+|| -++|- -.+.-.........|+ +|--|+.|+..+ +|--|-
T Consensus 194 ~F-S~dGK~iLlsT~~s~~~~lD--Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg----------~i~vw~ 260 (311)
T KOG1446|consen 194 EF-SPDGKSILLSTNASFIYLLD--AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG----------TIHVWN 260 (311)
T ss_pred EE-cCCCCEEEEEeCCCcEEEEE--ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC----------cEEEEE
Confidence 33 4666 5677665 44555 23332 1111112233455674 444455554433 456677
Q ss_pred eccceeeeeeecCCCCcccccccceeeecCCceeeeeeccceeeeecccccCCc
Q 002470 817 LRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLFVFDALSNDGFQ 870 (918)
Q Consensus 817 lRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLFvFda~~~d~~q 870 (918)
++-|+-|+...=| |.-+-.+-| | |--..|.|.+--..+|-.-.++..+
T Consensus 261 ~~tg~~v~~~~~~----~~~~~~~~~-f-nP~~~mf~sa~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 261 LETGKKVAVLRGP----NGGPVSCVR-F-NPRYAMFVSASSNLVFWLPDEDALP 308 (311)
T ss_pred cCCCcEeeEecCC----CCCCccccc-c-CCceeeeeecCceEEEEeccccccC
Confidence 8888888887766 444444444 4 4445666666667777766666544
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.33 E-value=1.1e+02 Score=35.60 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=46.7
Q ss_pred cccccceeccccce------------eeecccccceeEEEEccCCceEE-EEeeccceeeeccCCccceeccccEEEee-
Q 002470 631 PETHQWWYKPCGPL------------IASAASSQRVVTVYDIRDGEQIM-QWEVQKPVLTMDYSSPLQWRNRGKLVVAE- 696 (918)
Q Consensus 631 ~e~~qWWYrPCGPL------------l~StaS~q~~V~~yDIRDGe~vM-kWevqkpV~~M~YSSPlQWRnrgKvViAe- 696 (918)
.-+-+|=||+||++ ++|+..+..-+-+|-|---+++. +--++-||-+ |+=-|-|-.|+|+
T Consensus 27 TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a------l~s~n~G~~l~ag~ 100 (476)
T KOG0646|consen 27 TGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA------LASSNLGYFLLAGT 100 (476)
T ss_pred CCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceee------eecCCCceEEEeec
Confidence 55678999999875 34555555556666665555544 2222233333 4455779999998
Q ss_pred -cceeeeeecCC
Q 002470 697 -AETISLWDVNS 707 (918)
Q Consensus 697 -~e~islWDVnS 707 (918)
.+.|-+|-++|
T Consensus 101 i~g~lYlWelss 112 (476)
T KOG0646|consen 101 ISGNLYLWELSS 112 (476)
T ss_pred ccCcEEEEEecc
Confidence 67899999987
Done!