Query 002470
Match_columns 918
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 29240
Date Tue Mar 26 16:05:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002470.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1192-1195//hhsearch_pdb/002470hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zwl_B Eukaryotic translation 1.0 1 1 40.8 18.3 47 811-864 296-345 (369)
2 3vl1_A 26S proteasome regulato 1.0 1 1 40.2 25.6 293 507-867 60-367 (420)
3 1yfq_A Cell cycle arrest prote 1.0 1 1 39.7 17.0 265 511-859 19-316 (342)
4 2vdu_B TRNA (guanine-N(7)-)-me 1.0 1 1 39.1 18.4 59 642-708 210-272 (450)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 38.9 21.7 16 653-668 862-877 (1249)
6 2ovr_B FBW7, F-BOX/WD repeat p 1.0 1 1 38.8 26.9 31 650-680 256-287 (445)
7 3v7d_B Cell division control p 1.0 1 1 38.2 24.9 282 515-862 173-459 (464)
8 3lrv_A PRE-mRNA-splicing facto 1.0 1 1 37.7 15.8 63 641-710 138-204 (343)
9 3zwl_B Eukaryotic translation 1.0 1 1 37.2 17.9 82 638-729 183-268 (369)
10 4e54_B DNA damage-binding prot 1.0 1 1 37.0 16.1 154 514-711 131-286 (435)
No 1
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=40.79 Aligned_cols=47 Identities=4% Similarity=0.005 Sum_probs=20.2
Q ss_pred CCEECEECCCEEEEEEECCCCCCCCCCCCCEEE-ECCC-CEEEEEECCC-EEEEECC
Q ss_conf 100001202202122205898865533221042-0387-4045551561-1353124
Q 002470 811 QVQQFSLRKQRLMNTYSLPESNAHSYHSAITQV-WGNS-NLVMGISGEG-LFVFDAL 864 (918)
Q Consensus 811 ~vqq~SlRk~~Lv~tYslPesNah~h~saItQV-WGnS-n~Vm~~cG~G-LFvFda~ 864 (918)
.+.-|.++.++++.++. .|...|+.+ |-.. +++..++.-| +.+++.-
T Consensus 296 ~i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 296 EARFYHKIFEEEIGRVQ-------GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEEETTTCCEEEEEE-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCCCHHHEE-------CCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 16999557775422153-------255727799998999999998089949999876
No 2
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=1.00 E-value=1 Score=40.19 Aligned_cols=293 Identities=14% Similarity=0.169 Sum_probs=155.2
Q ss_pred CCCEEEECCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 22024531745785305997310002585234112299866788764128996279988875389994069977654434
Q 002470 507 TGGWFVSEGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCS 586 (918)
Q Consensus 507 tgGWFVsEGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCS 586 (918)
+.--|-..|.-++.+..|++...||+.+.+....+.... .. .+.+-. ..|++++.++..+ ..+-
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~----~~~~~~---~~~~~l~~~~~dg----~i~i 123 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRAD-----YT----AVDTAK---LQMRRFILGTTEG----DIKV 123 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCC-----EE----EEEEEC---SSSCEEEEEETTS----CEEE
T ss_pred CCEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCC-----CE----EEEEEE---CCCCEEEEEECCC----CEEE
T ss_conf 212255448849999928958998711441135884399-----45----999981---6898899997899----7999
Q ss_pred CCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 32222221557750688422433510489996334455432235665620000366402212345503589974478547
Q 002470 587 WDFYTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQI 666 (918)
Q Consensus 587 WDfYsk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~v 666 (918)
||..+...... +... .....++ -+-|.|.+|++ ++.-..|.+||++.|+.+
T Consensus 124 wd~~~~~~~~~----------------~~~h----~~~v~~~--------~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 124 LDSNFNLQREI----------------DQAH----VSEITKL--------KFFPSGEALIS-SSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp ECTTSCEEEEE----------------TTSS----SSCEEEE--------EECTTSSEEEE-EETTSEEEEEETTTCCCC
T ss_pred EECCCCCEEEE----------------CCCC----CCCCEEE--------EECCCCCEEEE-EECCCEEEEEECCCCCCC
T ss_conf 95777514565----------------1465----5740899--------99799998999-838981999868998675
Q ss_pred EEEE-ECCCEEEECCCCCCCEECCCCEEEE-EC-CEEEEEECCCCCCCEEEEEE-CCCCEEEEEEEECCCCCCCCC-CCE
Q ss_conf 8876-3050443204896320005527994-11-22344322788962024320-488124899952255333573-000
Q 002470 667 MQWE-VQKPVLTMDYSSPLQWRNRGKLVVA-EA-ETISLWDVNSLNPQTLLSVS-SCGRKISALHVNNTDAELGGG-VRQ 741 (918)
Q Consensus 667 MkWe-vqkpV~~M~YSSPlQWRnrgKvViA-e~-e~islWDVnSL~pq~llsV~-~~Gkki~aLHV~NtDAE~gGG-VRQ 741 (918)
..+. -..+|..+.++. .|+.+++ .. .+|-+||+.+-.+...+... .....+.++.+.......--. -..
T Consensus 175 ~~~~~h~~~v~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIID------RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp EEEECCSSCEEEEEEET------TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred EEECCCCCCEEEEEECC------CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCC
T ss_conf 07747887689999968------999799973899489868799962588565778888852899814886203203667
Q ss_pred EECCCCCCCCCC-EE--E-CCCCEEEEEECCCCCCCCCCCCCCCCCCEE-EE-CCC-EEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 102332157980-23--1-678302453037765442355688752014-31-488-37883000001223478631000
Q 002470 742 RVSSAEAEGNDG-VF--C-TPDSINILDFRHPAGIGLKIPKFGVNAQSV-FS-RGD-SIFLGCCNVRSTGKKQPSSQVQQ 814 (918)
Q Consensus 742 RvSSse~EgnDG-vf--c-T~dsiNvlDFR~PsGIGlKip~~g~~~qSv-fs-rGD-sVf~G~t~~~~~~k~q~~s~vqq 814 (918)
.+.+... ..|| .+ + ....|.++|.+...-+......+...+.++ |+ .|. -++.|+.. ..|.-
T Consensus 249 ~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----------g~i~v 317 (420)
T 3vl1_A 249 KKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN----------GMLAQ 317 (420)
T ss_dssp CCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT----------SEEEE
T ss_pred CCCCEEE-CCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECC----------CEEEE
T ss_conf 6664277-379998999848995999988988444774466688701599827999789999689----------83999
Q ss_pred CEECCCE-EEEEEECCCCCCCCCCCCCEEEECCCCEEEEEEC-CC-EEEEECCCCC
Q ss_conf 0120220-2122205898865533221042038740455515-61-1353124356
Q 002470 815 FSLRKQR-LMNTYSLPESNAHSYHSAITQVWGNSNLVMGISG-EG-LFVFDALSND 867 (918)
Q Consensus 815 ~SlRk~~-Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG-~G-LFvFda~~~d 867 (918)
|.++.++ ++.++... |...|+.+|-...-.+++++ -| +.++|.....
T Consensus 318 wd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 318 WDLRSPECPVGEFLIN------EGTPINNVYFAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EETTCTTSCSEEEEES------TTSCEEEEEEETTEEEEEETTTEEEEEEEECCTT
T ss_pred EECCCCCCCHHHHHCC------CCCCCEEEEECCCCEEEEECCCCCEEEEECCCCC
T ss_conf 8768886764652235------7887259996799989994499518999624788
No 3
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=1.00 E-value=1 Score=39.73 Aligned_cols=265 Identities=13% Similarity=0.168 Sum_probs=140.9
Q ss_pred EEECCCEEEEEECCCCCCEEECCCCC----CCCEECCCCCCCCCCCCCEEEEECCCCCCCCCC-EEEEECCCCCCCCCCC
Q ss_conf 45317457853059973100025852----341122998667887641289962799888753-8999406997765443
Q 002470 511 FVSEGESVLLAHDDGSCSYYDITNCE----DKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGR-YVVAASAGNSLDSGFC 585 (918)
Q Consensus 511 FVsEGE~vLLAHdDgsCSyyDiAN~E----eKavYkpPs~vs~n~W~DCWiiRApG~DGcSgr-yVVAASAGntldsgFC 585 (918)
|-..|.-++.+-.||+...||+...+ .+..+. ....+..=+|. | .|+ ++++++..+ -.+
T Consensus 19 ~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~---~-----~~~~~l~~~~~dg----~i~ 82 (342)
T 1yfq_A 19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR----YKHPLLCCNFI---D-----NTDLQIYVGTVQG----EIL 82 (342)
T ss_dssp EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE----CSSCEEEEEEE---E-----SSSEEEEEEETTS----CEE
T ss_pred ECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEEEE----CCCCEEEEEEC---C-----CCCCEEEEECCCC----EEE
T ss_conf 869998899970898199997179985312223410----28956899987---8-----9983799982897----499
Q ss_pred CCCC-CCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCC--
Q ss_conf 4322-2222155775068842243351048999633445543223566562000036640221234550358997447--
Q 002470 586 SWDF-YTKDVRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRD-- 662 (918)
Q Consensus 586 SWDf-Ysk~v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRD-- 662 (918)
-||. -+.+...+. ..+.. ....++ -| -| +.+|++ ++....+.+||++.
T Consensus 83 ~wd~~~~~~~~~~~--------------~~~~~-----~~v~~l-------~~-~~-~~~l~s-~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 83 KVDLIGSPSFQALT--------------NNEAN-----LGICRI-------CK-YG-DDKLIA-ASWDGLIEVIDPRNYG 133 (342)
T ss_dssp EECSSSSSSEEECB--------------SCCCC-----SCEEEE-------EE-ET-TTEEEE-EETTSEEEEECHHHHT
T ss_pred EEEECCCCCEEECC--------------CCCCC-----CCEEEE-------EE-CC-CCEEEE-ECCCCEEEEECCCCCC
T ss_conf 99813688357604--------------66788-----825888-------86-79-988999-7189859997530045
Q ss_pred -------CCEEEEEEECCCEEEECCCCCCCEECCCCEEEEECC-EEEEEECCC-CCCCEEEEEECCCCEEEEEEEECCCC
Q ss_conf -------854788763050443204896320005527994112-234432278-89620243204881248999522553
Q 002470 663 -------GEQIMQWEVQKPVLTMDYSSPLQWRNRGKLVVAEAE-TISLWDVNS-LNPQTLLSVSSCGRKISALHVNNTDA 733 (918)
Q Consensus 663 -------Ge~vMkWevqkpV~~M~YSSPlQWRnrgKvViAe~e-~islWDVnS-L~pq~llsV~~~Gkki~aLHV~NtDA 733 (918)
++.+..+....+|.+|+++. .+ ++++..+ .|.+||+.. ...............+.++.....|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTKVKNKIFTMDTNS------SR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp TBCEEEEESCSSSSSSCCCEEEEEECS------SE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred CCCCCCCCCEEEEEEECCCEEEEEECC------CC-EEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCC
T ss_conf 543212477036874089647999468------81-89994898499997886655530144037777642799878998
Q ss_pred CCCCCCCEEECCCCCCCCCCEEECCCCEEEEEECCC--C---CCCCCCCCCC---------CCCCEE-EE-CCCEEEEEE
Q ss_conf 335730001023321579802316783024530377--6---5442355688---------752014-31-488378830
Q 002470 734 ELGGGVRQRVSSAEAEGNDGVFCTPDSINILDFRHP--A---GIGLKIPKFG---------VNAQSV-FS-RGDSIFLGC 797 (918)
Q Consensus 734 E~gGGVRQRvSSse~EgnDGvfcT~dsiNvlDFR~P--s---GIGlKip~~g---------~~~qSv-fs-rGDsVf~G~ 797 (918)
+.-++.+ .|| .|.+.||+.. . -.-..+..+. ..+.++ |+ .|.-++.|+
T Consensus 207 ------~~l~~~~----~dg------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 207 ------EGYACSS----IDG------RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp ------CEEEEEE----TTS------EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred ------CEEEEEE----CCC------CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEC
T ss_conf ------7899972----688------689999728876655564436523435655653212689999868999899802
Q ss_pred EEECCCCCCCCCCCCEECEECCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEE
Q ss_conf 00001223478631000012022021222058988655332210420387404555156113
Q 002470 798 CNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPESNAHSYHSAITQVWGNSNLVMGISGEGLF 859 (918)
Q Consensus 798 t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPesNah~h~saItQVWGnSn~Vm~~cG~GLF 859 (918)
.. ..|.-|.++.++++.++... |...|+.+--+.+++..++.-|.|
T Consensus 271 ~d----------g~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 271 SD----------GIISCWNLQTRKKIKNFAKF------NEDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp TT----------SCEEEEETTTTEEEEECCCC------SSSEEEEEEECSSEEEEEEECTHH
T ss_pred CC----------CEEEEECCCCHHHHHHHHCC------CCCCCEEECCCCCEEEEEECCCCC
T ss_conf 78----------66999827557576554432------578816864799807997247743
No 4
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=39.12 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCEEEECCCCCCEEEEEECCCCCEEEEEE--ECCCEEEECCCCCCCEECCCCEEEEEC-C-EEEEEECCCC
Q ss_conf 64022123455035899744785478876--305044320489632000552799411-2-2344322788
Q 002470 642 GPLIASAASSQRVVTVYDIRDGEQIMQWE--VQKPVLTMDYSSPLQWRNRGKLVVAEA-E-TISLWDVNSL 708 (918)
Q Consensus 642 GPLl~StaS~q~~V~~yDIRDGe~vMkWe--vqkpV~~M~YSSPlQWRnrgKvViAe~-e-~islWDVnSL 708 (918)
|.+|++. +.-..|.+||++.|..+..+- -..+|..+.++ .|+.++.+. + +|.+||+.+.
T Consensus 210 ~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-------d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 210 HQFIITS-DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-------KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CEEEEEE-ETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-------STTEEEEEESSSEEEEEETTTC
T ss_pred CCEEEEE-CCCCCEEEEECCCCCEEEEEECCCCCCEEEEEEC-------CCCEEEEEECCCEEEEEECCCC
T ss_conf 8199998-1899689998999851211213787834899988-------9999999908996999989989
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=38.95 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=6.1
Q ss_pred CEEEEEECCCCCEEEE
Q ss_conf 0358997447854788
Q 002470 653 RVVTVYDIRDGEQIMQ 668 (918)
Q Consensus 653 ~~V~~yDIRDGe~vMk 668 (918)
..|.+||+..+..+..
T Consensus 862 g~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVAD 877 (1249)
T ss_dssp SCEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCCEEEE
T ss_conf 8699998678956532
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=1.00 E-value=1 Score=38.78 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=13.2
Q ss_pred CCCCEEEEEECCCCCEEEEEEE-CCCEEEECC
Q ss_conf 4550358997447854788763-050443204
Q 002470 650 SSQRVVTVYDIRDGEQIMQWEV-QKPVLTMDY 680 (918)
Q Consensus 650 S~q~~V~~yDIRDGe~vMkWev-qkpV~~M~Y 680 (918)
+....+.+||++.++.+..... ..+|.++.+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCCEEEEEE
T ss_conf 18997999979998475896387785489998
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=1.00 E-value=1 Score=38.20 Aligned_cols=282 Identities=16% Similarity=0.213 Sum_probs=149.9
Q ss_pred CCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 74578530599731000258523411229986678876412899627998887538999406997765443432222221
Q 002470 515 GESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKDV 594 (918)
Q Consensus 515 GE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~v 594 (918)
..-++.+-.||+...+|+.+.+....+.... ..+..=+|. |. ..+.++++++..++ ..-||+-+...
T Consensus 173 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~---~~---~~~~~l~s~s~d~~----i~vwd~~~~~~ 239 (464)
T 3v7d_B 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIV---EY---KNIKYIVTGSRDNT----LHVWKLPKESS 239 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE---ES---SSCEEEEEEETTSC----EEEEECCCCCC
T ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCC---CCCEEEEEE---CC---CCCCEEEEECCCCC----EEEEECCCCCC
T ss_conf 9989999478988999789895799989989---866899976---37---99888999759982----89910788853
Q ss_pred EEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE-CC
Q ss_conf 55775068842243351048999633445543223566562000036640221234550358997447854788763-05
Q 002470 595 RAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-QK 673 (918)
Q Consensus 595 ~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-qk 673 (918)
...+......+. ....|..+... ..........-...-|.|.+|++. +....|.+||++.++.+..... ..
T Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 240 VPDHGEEHDYPL--VFHTPEENPYF-----VGVLRGHMASVRTVSGHGNIVVSG-SYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp C------CCSSE--EESCGGGCTTE-----EEEECCCSSCEEEEEEETTEEEEE-ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCCCCCCCE--EEECCCCCEEE-----EEECCCCCCEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEECCCCC
T ss_conf 333556677404--76236778079-----997158623089985889999999-3898199997998858899648878
Q ss_pred CEEEECCCCCCCEECCCCEEEEECC--EEEEEECCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCC
Q ss_conf 0443204896320005527994112--23443227889620243204881248999522553335730001023321579
Q 002470 674 PVLTMDYSSPLQWRNRGKLVVAEAE--TISLWDVNSLNPQTLLSVSSCGRKISALHVNNTDAELGGGVRQRVSSAEAEGN 751 (918)
Q Consensus 674 pV~~M~YSSPlQWRnrgKvViAe~e--~islWDVnSL~pq~llsV~~~Gkki~aLHV~NtDAE~gGGVRQRvSSse~Egn 751 (918)
+|..+.+ -..|+.++++.. +|-+||+.+- +.+.+.......+.++..++ +++-+. +.
T Consensus 312 ~v~~~~~------~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~----------~~l~s~---s~ 370 (464)
T 3v7d_B 312 RIYSTIY------DHERKRCISASMDTTIRIWDLENG--ELMYTLQGHTALVGLLRLSD----------KFLVSA---AA 370 (464)
T ss_dssp CEEEEEE------ETTTTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECS----------SEEEEE---ET
T ss_pred CEEEEEE------CCCCCEEEEEECCCCEEEEECCCC--CEEEEEECCCCCEEEEEECC----------CEEEEE---EC
T ss_conf 7899998------699999999938994899989999--68899817777478999849----------999999---69
Q ss_pred CCEEECCCCEEEEEECCCCCCCCCCCCCC-CCCCEEEECCCEEEEEEEEECCCCCCCCCCCCEECEECCCEEEEEEECCC
Q ss_conf 80231678302453037765442355688-75201431488378830000012234786310000120220212220589
Q 002470 752 DGVFCTPDSINILDFRHPAGIGLKIPKFG-VNAQSVFSRGDSIFLGCCNVRSTGKKQPSSQVQQFSLRKQRLMNTYSLPE 830 (918)
Q Consensus 752 DGvfcT~dsiNvlDFR~PsGIGlKip~~g-~~~qSvfsrGDsVf~G~t~~~~~~k~q~~s~vqq~SlRk~~Lv~tYslPe 830 (918)
|| .|.+.|.+.+.-. ..+.... ....++...|.-+..|. . ..+.-|.++.++++.++.+++
T Consensus 371 dg------~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-d----------g~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 371 DG------SIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSGS-E----------NQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp TS------EEEEEETTTCCEE-EEEECTTCCCEEEEEECSSEEEEEE-T----------TEEEEEETTTCCEEESCTTTT
T ss_pred CC------CEEEEECCCCCEE-EEECCCCCCCEEEEEECCCEEEEEC-C----------CEEEEEECCCCCEEEHHHCCC
T ss_conf 99------6899988988245-5423789754899981799999923-9----------969999878992972110457
Q ss_pred CCCCCCCCCCEEEECCCC-EEEEEECCCEEEEE
Q ss_conf 886553322104203874-04555156113531
Q 002470 831 SNAHSYHSAITQVWGNSN-LVMGISGEGLFVFD 862 (918)
Q Consensus 831 sNah~h~saItQVWGnSn-~Vm~~cG~GLFvFd 862 (918)
...|+.|-=+.+ ++.+....|...++
T Consensus 433 ------~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 433 ------ADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ------CSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ------CCCEEEEEECCCEEEEEEEECCEEEEE
T ss_conf ------884799996599899999859958999
No 8
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=37.68 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=29.5
Q ss_pred CCCEEEECCCCCCEEEEEECCCCCEEEEEE--ECCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCCCC
Q ss_conf 664022123455035899744785478876--305044320489632000552799411--2234432278896
Q 002470 641 CGPLIASAASSQRVVTVYDIRDGEQIMQWE--VQKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNP 710 (918)
Q Consensus 641 CGPLl~StaS~q~~V~~yDIRDGe~vMkWe--vqkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~p 710 (918)
.|.++++ ++....|.+||++.|+.+.... ...++..+.+ ...|++++++. ..|-+||+.+...
T Consensus 138 ~~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~------~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL------HKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE------CTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred CCCEEEE-EECCCCEEEEECCCCCEEEEEECCCCCCEEEEEE------CCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf 8999999-9699849999887992899981688885699998------89888999981899799998978987
No 9
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=37.17 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=39.4
Q ss_pred ECCCCCEEEECCCCCCEEEEEECCC-CCEEEEEEE-CCCEEEECCCCCCCEECCCCEEEEEC--CEEEEEECCCCCCCEE
Q ss_conf 0036640221234550358997447-854788763-05044320489632000552799411--2234432278896202
Q 002470 638 YKPCGPLIASAASSQRVVTVYDIRD-GEQIMQWEV-QKPVLTMDYSSPLQWRNRGKLVVAEA--ETISLWDVNSLNPQTL 713 (918)
Q Consensus 638 YrPCGPLl~StaS~q~~V~~yDIRD-Ge~vMkWev-qkpV~~M~YSSPlQWRnrgKvViAe~--e~islWDVnSL~pq~l 713 (918)
+-|.|.+|++ ++....|.+||++. ++.+..... ..+|..|.++. .|+.+++.. ..|.+||+....+...
T Consensus 183 ~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 183 WSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP------DLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp ECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEE-ECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECC------CCCEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 8189988999-769987999999998276799805788366999899------889999965995599998878843556
Q ss_pred EEEECCCCEEEEEEEE
Q ss_conf 4320488124899952
Q 002470 714 LSVSSCGRKISALHVN 729 (918)
Q Consensus 714 lsV~~~Gkki~aLHV~ 729 (918)
+. ....+.++...
T Consensus 256 ~~---~~~~~~~~~~~ 268 (369)
T 3zwl_B 256 YE---TDCPLNTAVIT 268 (369)
T ss_dssp EE---CSSCEEEEEEC
T ss_pred EC---CCCCCEEEEEC
T ss_conf 35---89971258864
No 10
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=37.04 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=62.1
Q ss_pred CCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 17457853059973100025852341122998667887641289962799888753899940699776544343222222
Q 002470 514 EGESVLLAHDDGSCSYYDITNCEDKAVYKPPTAVSSSIWRDCWIIRAAGADGCSGRYVVAASAGNSLDSGFCSWDFYTKD 593 (918)
Q Consensus 514 EGE~vLLAHdDgsCSyyDiAN~EeKavYkpPs~vs~n~W~DCWiiRApG~DGcSgryVVAASAGntldsgFCSWDfYsk~ 593 (918)
.+.-+.-+-.||+...+|+...+....+.. .+-...++.=+|- | ..+.+++.+|.-++ .+-||+-+..
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH~~~V~~l~f~---p----~~~~~l~s~s~D~~----v~iwd~~~~~ 198 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGAGGSITGLKFN---P----LNTNQFYASSMEGT----TRLQDFKGNI 198 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECC-CSSSCCCCEEEEC---S----SCTTEEEEECSSSC----EEEEETTSCE
T ss_pred CCCEEEEEECCCEEEEEECCCCCCEEEEEC-CCCCCCEEEEEEE---C----CCCCEEEEEECCCE----EEEEECCCCC
T ss_conf 999999991889799997989971368973-6899988899990---7----99999999958997----9996456772
Q ss_pred EEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE-C
Q ss_conf 155775068842243351048999633445543223566562000036640221234550358997447854788763-0
Q 002470 594 VRAFHIEGEGKTTSRTVLGPLPNNNIYRRNAFSSVLVPETHQWWYKPCGPLIASAASSQRVVTVYDIRDGEQIMQWEV-Q 672 (918)
Q Consensus 594 v~Afh~e~~s~~~Srt~L~pL~nn~~~rrN~~s~~~~~e~~qWWYrPCGPLl~StaS~q~~V~~yDIRDGe~vMkWev-q 672 (918)
.+.+....... . ....+-+-|-|.+|++ ++.-..|.+||++ |..+..+.. .
T Consensus 199 ~~~~~~~~~~~-~-------------------------~~~~~~~~~~~~~l~~-g~~dg~i~~wd~~-~~~~~~~~~h~ 250 (435)
T 4e54_B 199 LRVFASSDTIN-I-------------------------WFCSLDVSASSRMVVT-GDNVGNVILLNMD-GKELWNLRMHK 250 (435)
T ss_dssp EEEEECCSSCS-C-------------------------CCCCEEEETTTTEEEE-ECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred EEEEECCCCCC-C-------------------------CEEEEEECCCCCEEEE-EECCCCEEEECCC-CCEEEEEECCC
T ss_conf 25886167777-5-------------------------3799998999999999-9589967663267-50568984134
Q ss_pred CCEEEECCCCCCCEECCCCEEEEEC-CEEEEEECCCCCCC
Q ss_conf 5044320489632000552799411-22344322788962
Q 002470 673 KPVLTMDYSSPLQWRNRGKLVVAEA-ETISLWDVNSLNPQ 711 (918)
Q Consensus 673 kpV~~M~YSSPlQWRnrgKvViAe~-e~islWDVnSL~pq 711 (918)
.+|.++.++.- +..-++.+.. -+|.+||+......
T Consensus 251 ~~v~~v~~~p~----~~~~~~s~s~d~~v~iwd~~~~~~~ 286 (435)
T 4e54_B 251 KKVTHVALNPC----CDWFLATASVDQTVKIWDLRQVRGK 286 (435)
T ss_dssp SCEEEEEECTT----CSSEEEEEETTSBCCEEETTTCCSS
T ss_pred CEEEEEEECCC----CCEEEEEECCCCEEEEEECCCCCCC
T ss_conf 33775333377----7449998337640258863446665
Done!