Query 002471
Match_columns 918
No_of_seqs 1357 out of 3993
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 00:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1E-45 2.2E-50 381.4 26.4 310 557-918 119-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-43 2.6E-48 366.1 25.7 288 629-918 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.6E-41 7.9E-46 352.7 24.3 287 627-918 164-458 (459)
4 KOG0286 G-protein beta subunit 100.0 2.2E-39 4.8E-44 325.0 33.9 291 625-918 42-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 3.8E-37 8.1E-42 310.3 28.0 286 630-916 39-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 7.1E-38 1.5E-42 328.0 22.7 273 554-877 176-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 1.6E-34 3.4E-39 309.7 38.3 359 556-918 62-600 (603)
8 KOG0279 G protein beta subunit 100.0 6.2E-35 1.4E-39 291.7 32.6 285 627-918 4-311 (315)
9 KOG0285 Pleiotropic regulator 100.0 1.1E-35 2.3E-40 305.0 25.9 287 626-918 139-437 (460)
10 KOG0295 WD40 repeat-containing 100.0 1E-35 2.2E-40 306.7 23.6 288 627-918 97-404 (406)
11 KOG0266 WD40 repeat-containing 100.0 4.7E-34 1E-38 330.2 40.1 287 628-918 148-452 (456)
12 KOG0315 G-protein beta subunit 100.0 1.2E-34 2.6E-39 284.8 29.1 266 651-918 11-286 (311)
13 KOG0284 Polyadenylation factor 100.0 4.7E-36 1E-40 312.9 17.7 275 638-918 96-378 (464)
14 KOG0273 Beta-transducin family 100.0 1.3E-33 2.9E-38 299.3 29.9 281 630-918 171-480 (524)
15 cd00200 WD40 WD40 domain, foun 100.0 1.1E-32 2.4E-37 295.7 37.7 282 632-918 3-289 (289)
16 KOG0315 G-protein beta subunit 100.0 6.6E-33 1.4E-37 272.6 30.2 267 627-899 29-309 (311)
17 KOG0282 mRNA splicing factor [ 100.0 1.6E-34 3.5E-39 307.8 19.2 290 627-918 203-503 (503)
18 KOG0293 WD40 repeat-containing 100.0 5.8E-34 1.3E-38 297.0 22.3 287 625-918 211-511 (519)
19 KOG0645 WD40 repeat protein [G 100.0 2.8E-32 6.1E-37 271.6 32.8 281 628-918 4-309 (312)
20 KOG0279 G protein beta subunit 100.0 7.3E-33 1.6E-37 276.9 28.5 246 628-879 53-313 (315)
21 KOG0291 WD40-repeat-containing 100.0 5.1E-32 1.1E-36 300.8 34.3 288 626-918 295-610 (893)
22 KOG0273 Beta-transducin family 100.0 4.5E-32 9.8E-37 287.8 30.3 274 638-918 235-521 (524)
23 KOG0296 Angio-associated migra 100.0 1.3E-31 2.9E-36 276.6 30.7 295 614-918 85-396 (399)
24 KOG0319 WD40-repeat-containing 100.0 5.4E-32 1.2E-36 300.9 29.6 288 627-918 312-617 (775)
25 KOG0291 WD40-repeat-containing 100.0 4.8E-31 1E-35 293.1 36.9 322 556-918 99-506 (893)
26 KOG0263 Transcription initiati 100.0 3.7E-32 8E-37 305.9 28.2 275 630-909 370-704 (707)
27 KOG0281 Beta-TrCP (transducin 100.0 2.6E-33 5.7E-38 285.9 15.5 264 636-918 195-475 (499)
28 KOG0263 Transcription initiati 100.0 5.5E-32 1.2E-36 304.5 26.4 262 558-836 383-651 (707)
29 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 2.9E-35 323.0 41.2 282 634-918 479-791 (793)
30 KOG0319 WD40-repeat-containing 100.0 1.4E-31 3E-36 297.6 28.4 349 559-918 25-575 (775)
31 KOG0286 G-protein beta subunit 100.0 1.1E-30 2.4E-35 262.5 30.9 243 630-877 89-343 (343)
32 KOG0276 Vesicle coat complex C 100.0 1.7E-31 3.6E-36 290.9 26.8 282 630-916 5-295 (794)
33 KOG0316 Conserved WD40 repeat- 100.0 6.2E-31 1.3E-35 256.7 26.2 280 628-917 7-296 (307)
34 KOG0295 WD40 repeat-containing 100.0 6.7E-31 1.5E-35 271.2 24.5 242 632-878 144-405 (406)
35 KOG0306 WD40-repeat-containing 100.0 1.9E-30 4.2E-35 288.2 28.0 279 632-918 367-662 (888)
36 KOG0306 WD40-repeat-containing 100.0 1.1E-29 2.4E-34 282.2 33.2 341 564-917 33-577 (888)
37 KOG0275 Conserved WD40 repeat- 100.0 1.4E-31 3E-36 270.9 16.5 277 636-918 211-507 (508)
38 KOG0278 Serine/threonine kinas 100.0 3.6E-31 7.7E-36 260.2 18.5 278 633-918 9-295 (334)
39 KOG1407 WD40 repeat protein [F 100.0 7.1E-30 1.5E-34 253.1 27.1 280 632-917 14-308 (313)
40 KOG0284 Polyadenylation factor 100.0 1.2E-31 2.6E-36 280.1 14.1 258 616-878 116-379 (464)
41 KOG0318 WD40 repeat stress pro 100.0 3.5E-29 7.6E-34 268.8 33.2 282 629-918 50-348 (603)
42 KOG0643 Translation initiation 100.0 2.5E-29 5.5E-34 249.8 28.1 279 633-917 5-314 (327)
43 KOG0276 Vesicle coat complex C 100.0 3.5E-29 7.5E-34 272.9 29.0 243 630-875 47-295 (794)
44 KOG0292 Vesicle coat complex C 100.0 1.6E-29 3.4E-34 284.4 27.1 282 633-918 4-319 (1202)
45 KOG0296 Angio-associated migra 100.0 3.9E-29 8.4E-34 258.4 27.2 286 630-918 56-354 (399)
46 KOG0266 WD40 repeat-containing 100.0 4.1E-29 8.9E-34 289.1 30.6 245 630-879 195-454 (456)
47 KOG0288 WD40 repeat protein Ti 100.0 3.4E-30 7.3E-35 269.7 17.2 289 627-918 164-459 (459)
48 KOG0772 Uncharacterized conser 100.0 5E-29 1.1E-33 266.6 25.9 292 625-917 154-484 (641)
49 KOG0285 Pleiotropic regulator 100.0 1.7E-29 3.8E-34 259.5 21.2 242 670-918 141-387 (460)
50 KOG0281 Beta-TrCP (transducin 100.0 3.5E-30 7.5E-35 263.2 15.9 272 599-884 198-482 (499)
51 KOG1446 Histone H3 (Lys4) meth 100.0 1E-27 2.2E-32 245.1 33.9 284 627-917 3-300 (311)
52 KOG0640 mRNA cleavage stimulat 100.0 6.8E-29 1.5E-33 250.7 23.0 284 630-918 104-424 (430)
53 KOG0313 Microtubule binding pr 100.0 2.1E-28 4.6E-33 254.0 25.8 276 636-918 103-416 (423)
54 KOG0275 Conserved WD40 repeat- 100.0 1.6E-29 3.5E-34 255.9 17.0 276 558-877 218-507 (508)
55 KOG0265 U5 snRNP-specific prot 100.0 4.8E-28 1E-32 244.6 26.7 271 556-877 50-336 (338)
56 cd00200 WD40 WD40 domain, foun 100.0 4.7E-27 1E-31 251.9 35.3 242 631-877 44-289 (289)
57 KOG0277 Peroxisomal targeting 100.0 3.7E-28 7.9E-33 240.0 22.5 276 641-918 11-307 (311)
58 KOG0282 mRNA splicing factor [ 100.0 2.9E-29 6.4E-34 267.7 15.7 247 669-918 203-460 (503)
59 KOG0268 Sof1-like rRNA process 100.0 3.8E-29 8.2E-34 257.8 15.6 281 627-918 55-343 (433)
60 KOG0292 Vesicle coat complex C 100.0 1.6E-27 3.5E-32 268.3 29.1 242 633-880 46-322 (1202)
61 KOG0645 WD40 repeat protein [G 100.0 3.1E-27 6.7E-32 235.7 26.4 266 591-879 29-311 (312)
62 KOG0283 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 271.3 25.9 243 631-879 259-576 (712)
63 KOG0293 WD40 repeat-containing 100.0 8E-28 1.7E-32 251.3 21.7 277 555-880 226-514 (519)
64 KOG0310 Conserved WD40 repeat- 100.0 3.5E-27 7.6E-32 252.5 26.3 274 638-916 26-305 (487)
65 KOG0274 Cdc4 and related F-box 100.0 6.9E-27 1.5E-31 269.9 30.4 270 636-918 206-480 (537)
66 KOG0289 mRNA splicing factor [ 100.0 6E-27 1.3E-31 246.5 26.9 276 638-917 219-503 (506)
67 KOG0316 Conserved WD40 repeat- 100.0 6E-27 1.3E-31 228.8 24.3 267 557-876 21-296 (307)
68 PLN00181 protein SPA1-RELATED; 100.0 3.8E-26 8.2E-31 283.4 37.9 238 638-878 532-792 (793)
69 PTZ00420 coronin; Provisional 100.0 8.5E-26 1.8E-30 261.7 37.1 247 656-902 50-318 (568)
70 KOG0300 WD40 repeat-containing 100.0 5.5E-27 1.2E-31 237.2 22.2 287 627-918 137-474 (481)
71 KOG0647 mRNA export protein (c 100.0 1.9E-26 4.2E-31 233.2 26.0 270 636-908 25-311 (347)
72 PTZ00421 coronin; Provisional 100.0 1.4E-25 3.1E-30 258.9 35.5 263 637-901 19-314 (493)
73 KOG0973 Histone transcription 100.0 2.5E-26 5.5E-31 267.1 29.2 277 637-917 12-352 (942)
74 KOG0278 Serine/threonine kinas 100.0 1.9E-27 4.2E-32 234.0 16.2 251 628-884 49-302 (334)
75 KOG0305 Anaphase promoting com 99.9 5.9E-26 1.3E-30 252.8 28.2 266 643-918 182-459 (484)
76 KOG0294 WD40 repeat-containing 99.9 4.8E-26 1E-30 231.5 24.5 245 625-918 30-279 (362)
77 KOG0641 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 209.8 33.7 287 627-917 22-346 (350)
78 KOG0277 Peroxisomal targeting 99.9 2.5E-26 5.5E-31 227.0 20.3 247 628-878 51-308 (311)
79 KOG1408 WD40 repeat protein [F 99.9 1.2E-25 2.5E-30 247.9 26.6 347 571-918 279-711 (1080)
80 KOG0283 WD40 repeat-containing 99.9 5.2E-26 1.1E-30 258.7 24.2 279 551-835 265-577 (712)
81 KOG0308 Conserved WD40 repeat- 99.9 1.5E-26 3.3E-31 254.1 18.5 273 643-918 29-325 (735)
82 KOG0313 Microtubule binding pr 99.9 1.9E-25 4.2E-30 232.1 25.5 257 614-879 124-418 (423)
83 KOG0274 Cdc4 and related F-box 99.9 2.2E-25 4.9E-30 257.5 28.7 245 627-884 237-487 (537)
84 KOG0310 Conserved WD40 repeat- 99.9 2.5E-25 5.4E-30 238.3 25.7 237 638-880 68-310 (487)
85 KOG1407 WD40 repeat protein [F 99.9 1.5E-25 3.3E-30 222.4 21.1 239 674-916 14-257 (313)
86 KOG0973 Histone transcription 99.9 3.5E-25 7.6E-30 257.7 27.4 250 629-882 60-358 (942)
87 KOG1036 Mitotic spindle checkp 99.9 1E-24 2.2E-29 221.8 27.1 269 637-910 12-294 (323)
88 KOG0640 mRNA cleavage stimulat 99.9 1.4E-25 2.9E-30 226.9 20.1 291 557-879 116-426 (430)
89 KOG1539 WD repeat protein [Gen 99.9 7E-24 1.5E-28 239.1 34.2 297 620-917 184-645 (910)
90 PTZ00421 coronin; Provisional 99.9 6.4E-24 1.4E-28 245.1 34.3 242 633-881 70-333 (493)
91 KOG0305 Anaphase promoting com 99.9 2.6E-24 5.7E-29 239.6 29.8 293 534-881 160-463 (484)
92 KOG0288 WD40 repeat protein Ti 99.9 2.4E-25 5.3E-30 233.4 19.5 242 627-876 208-458 (459)
93 KOG0301 Phospholipase A2-activ 99.9 2.1E-24 4.6E-29 239.1 26.9 274 627-917 3-285 (745)
94 KOG2096 WD40 repeat protein [G 99.9 3.4E-24 7.3E-29 217.8 25.9 283 631-917 79-399 (420)
95 KOG0299 U3 snoRNP-associated p 99.9 3.1E-24 6.7E-29 228.3 26.4 271 631-908 135-443 (479)
96 KOG0639 Transducin-like enhanc 99.9 9.4E-25 2E-29 232.8 20.6 276 635-917 416-701 (705)
97 KOG0641 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 198.9 30.1 247 629-879 80-349 (350)
98 KOG1273 WD40 repeat protein [G 99.9 9E-24 1.9E-28 214.5 24.7 275 641-918 26-320 (405)
99 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-22 3.3E-27 221.5 36.0 262 650-918 1-277 (300)
100 KOG1408 WD40 repeat protein [F 99.9 3.9E-24 8.4E-29 236.0 22.0 246 633-881 454-715 (1080)
101 KOG1446 Histone H3 (Lys4) meth 99.9 1E-22 2.2E-27 208.5 30.5 246 670-918 4-260 (311)
102 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.6E-27 235.6 34.3 228 629-861 65-318 (568)
103 KOG0264 Nucleosome remodeling 99.9 8.9E-24 1.9E-28 225.2 22.8 247 633-918 119-402 (422)
104 KOG0643 Translation initiation 99.9 4.1E-23 8.8E-28 205.8 25.1 231 675-909 5-250 (327)
105 KOG0301 Phospholipase A2-activ 99.9 2.1E-23 4.5E-28 231.3 24.8 251 614-880 34-289 (745)
106 KOG2055 WD40 repeat protein [G 99.9 3.6E-23 7.8E-28 219.9 25.2 282 636-918 211-510 (514)
107 KOG2445 Nuclear pore complex c 99.9 6.1E-23 1.3E-27 208.3 24.9 255 635-918 10-316 (361)
108 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.4E-28 207.3 18.9 245 635-879 8-286 (299)
109 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.6E-26 221.3 36.2 359 553-918 74-604 (910)
110 KOG0647 mRNA export protein (c 99.9 1.6E-22 3.5E-27 204.9 26.0 229 632-869 66-313 (347)
111 KOG0308 Conserved WD40 repeat- 99.9 9.5E-24 2.1E-28 232.2 18.4 285 630-918 65-391 (735)
112 KOG0650 WD40 repeat nucleolar 99.9 6.4E-23 1.4E-27 223.5 24.0 289 624-917 386-732 (733)
113 KOG1332 Vesicle coat complex C 99.9 2.1E-23 4.6E-28 205.3 17.9 241 677-918 8-284 (299)
114 KOG0289 mRNA splicing factor [ 99.9 1.5E-22 3.3E-27 213.5 25.4 249 627-878 250-505 (506)
115 KOG0299 U3 snoRNP-associated p 99.9 2.5E-22 5.5E-27 213.8 23.6 230 635-869 199-445 (479)
116 KOG4283 Transcription-coupled 99.9 6.9E-22 1.5E-26 199.1 25.4 281 633-917 38-362 (397)
117 KOG0267 Microtubule severing p 99.9 3.7E-24 8E-29 237.8 9.6 236 632-911 22-259 (825)
118 KOG0268 Sof1-like rRNA process 99.9 4.8E-23 1E-27 212.9 16.5 246 628-882 99-348 (433)
119 KOG0772 Uncharacterized conser 99.9 2.3E-22 5.1E-27 215.8 21.9 235 638-876 214-484 (641)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4E-25 204.9 37.5 263 629-900 22-300 (300)
121 KOG0269 WD40 repeat-containing 99.9 1.3E-22 2.7E-27 227.5 20.0 273 640-915 41-335 (839)
122 KOG0321 WD40 repeat-containing 99.9 2.8E-22 6E-27 220.4 22.1 273 644-918 55-389 (720)
123 KOG2106 Uncharacterized conser 99.9 4.1E-21 8.9E-26 205.8 30.1 338 571-918 221-624 (626)
124 KOG2106 Uncharacterized conser 99.9 6.1E-21 1.3E-25 204.5 30.8 295 618-918 225-579 (626)
125 KOG0300 WD40 repeat-containing 99.9 2.8E-22 6.1E-27 203.2 19.5 256 652-918 126-426 (481)
126 KOG0639 Transducin-like enhanc 99.9 1.6E-22 3.4E-27 216.0 17.5 259 613-878 438-703 (705)
127 KOG2048 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 206.6 34.1 353 557-918 29-503 (691)
128 KOG1063 RNA polymerase II elon 99.9 3.4E-21 7.4E-26 213.7 26.9 283 632-918 261-646 (764)
129 KOG1274 WD40 repeat protein [G 99.9 5.2E-21 1.1E-25 218.6 28.9 274 635-916 10-296 (933)
130 KOG0264 Nucleosome remodeling 99.9 2.1E-21 4.6E-26 207.2 22.6 216 627-880 166-405 (422)
131 KOG0646 WD40 repeat protein [G 99.9 1.4E-21 3E-26 208.7 21.1 227 637-866 80-336 (476)
132 KOG1036 Mitotic spindle checkp 99.9 1E-20 2.2E-25 192.8 26.2 224 636-869 52-294 (323)
133 KOG2048 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 205.2 31.5 275 634-916 21-315 (691)
134 KOG4328 WD40 protein [Function 99.9 8.4E-21 1.8E-25 201.9 24.0 291 626-917 174-492 (498)
135 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-21 7.3E-26 205.7 20.8 285 571-902 11-305 (673)
136 KOG0302 Ribosome Assembly prot 99.9 6.9E-21 1.5E-25 198.0 22.5 246 634-917 147-435 (440)
137 KOG1274 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 213.5 27.1 239 677-918 10-260 (933)
138 KOG0646 WD40 repeat protein [G 99.9 2.4E-20 5.3E-25 199.2 24.2 256 656-918 13-305 (476)
139 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 199.4 21.4 241 642-884 177-454 (463)
140 KOG0642 Cell-cycle nuclear pro 99.9 1.8E-21 3.8E-26 212.1 14.2 253 627-884 283-566 (577)
141 KOG1034 Transcriptional repres 99.9 3.1E-20 6.8E-25 190.2 22.0 288 627-918 26-381 (385)
142 KOG0267 Microtubule severing p 99.9 5.7E-22 1.2E-26 220.6 9.9 199 629-829 61-262 (825)
143 KOG4227 WD40 repeat protein [G 99.9 3.6E-20 7.8E-25 192.5 21.1 284 630-918 48-385 (609)
144 KOG0294 WD40 repeat-containing 99.9 1.1E-19 2.5E-24 185.3 24.0 224 628-856 73-304 (362)
145 KOG0269 WD40 repeat-containing 99.9 6.2E-21 1.3E-25 214.1 16.2 236 641-880 90-341 (839)
146 KOG4283 Transcription-coupled 99.9 5.6E-20 1.2E-24 185.4 21.0 206 677-882 40-279 (397)
147 KOG2096 WD40 repeat protein [G 99.8 1.3E-19 2.9E-24 184.5 22.6 242 673-917 79-357 (420)
148 KOG0307 Vesicle coat complex C 99.8 4.4E-21 9.5E-26 224.5 13.6 274 641-917 9-324 (1049)
149 KOG4328 WD40 protein [Function 99.8 6.2E-20 1.3E-24 195.4 20.2 254 665-918 171-448 (498)
150 KOG0307 Vesicle coat complex C 99.8 1E-20 2.2E-25 221.5 15.0 242 638-882 64-330 (1049)
151 KOG1538 Uncharacterized conser 99.8 2.4E-19 5.3E-24 196.9 23.3 269 640-918 14-291 (1081)
152 KOG0321 WD40 repeat-containing 99.8 1.3E-19 2.9E-24 199.4 21.4 247 632-881 94-393 (720)
153 KOG2055 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 189.9 23.6 247 630-879 249-512 (514)
154 KOG1063 RNA polymerase II elon 99.8 4.5E-19 9.8E-24 197.0 24.9 291 627-918 180-600 (764)
155 COG2319 FOG: WD40 repeat [Gene 99.8 6.8E-17 1.5E-21 182.5 42.7 293 616-918 135-440 (466)
156 KOG0650 WD40 repeat nucleolar 99.8 2.5E-19 5.4E-24 195.7 21.4 242 671-917 391-677 (733)
157 KOG2919 Guanine nucleotide-bin 99.8 6.8E-19 1.5E-23 179.9 23.0 268 639-911 50-361 (406)
158 KOG1273 WD40 repeat protein [G 99.8 7.8E-19 1.7E-23 178.8 22.5 273 556-880 26-323 (405)
159 KOG0302 Ribosome Assembly prot 99.8 6.4E-19 1.4E-23 183.5 21.4 212 627-876 200-435 (440)
160 COG2319 FOG: WD40 repeat [Gene 99.8 5.8E-17 1.3E-21 183.1 38.8 282 633-918 60-357 (466)
161 KOG1445 Tumor-specific antigen 99.8 2.3E-18 5E-23 188.4 25.7 136 782-918 600-748 (1012)
162 KOG0322 G-protein beta subunit 99.8 1.4E-19 3E-24 180.4 14.8 281 629-918 5-321 (323)
163 KOG1009 Chromatin assembly com 99.8 2.2E-18 4.8E-23 181.4 24.1 295 591-916 28-368 (434)
164 KOG0644 Uncharacterized conser 99.8 3.8E-20 8.2E-25 208.2 9.4 275 627-917 179-465 (1113)
165 KOG0270 WD40 repeat-containing 99.8 3.5E-18 7.6E-23 181.7 22.9 234 683-918 176-447 (463)
166 KOG1334 WD40 repeat protein [G 99.8 2.6E-19 5.6E-24 191.9 13.1 291 627-917 131-463 (559)
167 KOG4378 Nuclear protein COP1 [ 99.8 3.7E-18 8.1E-23 182.7 19.0 258 656-918 8-278 (673)
168 KOG1007 WD repeat protein TSSC 99.8 1.1E-17 2.4E-22 168.6 21.2 248 627-916 52-357 (370)
169 KOG2445 Nuclear pore complex c 99.8 4.6E-17 9.9E-22 165.9 25.4 218 627-879 48-318 (361)
170 KOG1188 WD40 repeat protein [G 99.8 4.6E-18 9.9E-23 175.5 17.5 267 651-918 41-344 (376)
171 KOG1517 Guanine nucleotide bin 99.8 6.3E-17 1.4E-21 186.7 28.1 280 637-918 1063-1379(1387)
172 PRK11028 6-phosphogluconolacto 99.8 2.5E-16 5.4E-21 175.9 32.4 263 653-918 5-302 (330)
173 KOG1007 WD repeat protein TSSC 99.8 2.9E-17 6.3E-22 165.7 20.8 216 624-879 108-361 (370)
174 KOG0303 Actin-binding protein 99.8 4.6E-17 1E-21 170.5 23.1 210 673-883 74-298 (472)
175 PRK11028 6-phosphogluconolacto 99.8 8.4E-16 1.8E-20 171.6 34.0 249 627-879 24-304 (330)
176 KOG1034 Transcriptional repres 99.8 1.9E-17 4.1E-22 169.9 18.4 240 636-879 87-383 (385)
177 KOG1240 Protein kinase contain 99.8 3.8E-16 8.2E-21 183.2 30.6 292 627-918 1037-1431(1431)
178 KOG0642 Cell-cycle nuclear pro 99.8 8.8E-18 1.9E-22 183.5 15.0 241 673-918 287-559 (577)
179 KOG0290 Conserved WD40 repeat- 99.7 1.3E-16 2.9E-21 161.2 21.7 239 635-876 93-362 (364)
180 KOG2919 Guanine nucleotide-bin 99.7 2.4E-16 5.2E-21 161.4 23.0 231 638-871 104-362 (406)
181 KOG0649 WD40 repeat protein [G 99.7 2.5E-16 5.3E-21 155.5 20.9 227 682-917 12-271 (325)
182 KOG0303 Actin-binding protein 99.7 1.2E-16 2.5E-21 167.6 19.5 200 632-836 75-296 (472)
183 KOG0649 WD40 repeat protein [G 99.7 9.8E-16 2.1E-20 151.3 24.7 268 639-918 11-314 (325)
184 KOG1587 Cytoplasmic dynein int 99.7 8.6E-16 1.9E-20 176.7 28.1 257 660-918 222-514 (555)
185 KOG1310 WD40 repeat protein [G 99.7 2.4E-17 5.2E-22 178.4 14.0 237 628-884 40-308 (758)
186 KOG1538 Uncharacterized conser 99.7 4.8E-16 1E-20 171.2 21.0 237 631-880 46-294 (1081)
187 KOG0290 Conserved WD40 repeat- 99.7 8.9E-16 1.9E-20 155.3 20.8 251 629-918 36-316 (364)
188 KOG1188 WD40 repeat protein [G 99.7 4.1E-16 8.9E-21 161.2 18.7 253 627-880 59-347 (376)
189 KOG1524 WD40 repeat-containing 99.7 5.9E-16 1.3E-20 167.4 19.7 260 636-916 12-282 (737)
190 KOG1963 WD40 repeat protein [G 99.7 5.4E-15 1.2E-19 169.8 27.7 279 636-918 203-536 (792)
191 KOG2110 Uncharacterized conser 99.7 2.9E-14 6.4E-19 149.1 30.4 231 638-880 5-249 (391)
192 KOG2139 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 151.6 25.4 276 638-917 98-428 (445)
193 KOG1587 Cytoplasmic dynein int 99.7 2.4E-15 5.3E-20 173.0 22.4 244 637-881 241-518 (555)
194 KOG1445 Tumor-specific antigen 99.7 3.8E-15 8.3E-20 163.5 22.2 229 649-918 590-842 (1012)
195 KOG4227 WD40 repeat protein [G 99.7 6.4E-15 1.4E-19 153.7 22.7 281 557-878 60-386 (609)
196 KOG1523 Actin-related protein 99.7 1.1E-14 2.5E-19 149.4 23.1 225 633-860 5-260 (361)
197 PRK01742 tolB translocation pr 99.7 7E-15 1.5E-19 169.8 23.3 230 659-901 183-426 (429)
198 KOG2110 Uncharacterized conser 99.7 4.4E-14 9.6E-19 147.8 26.1 228 680-918 5-246 (391)
199 KOG1272 WD40-repeat-containing 99.6 5.4E-16 1.2E-20 165.7 11.7 262 639-912 130-401 (545)
200 PF02239 Cytochrom_D1: Cytochr 99.6 3.3E-13 7.1E-18 151.4 34.2 264 652-918 7-345 (369)
201 PRK01742 tolB translocation pr 99.6 2E-14 4.4E-19 166.0 23.7 223 631-860 196-426 (429)
202 KOG1963 WD40 repeat protein [G 99.6 1.2E-13 2.5E-18 159.0 27.5 278 636-917 14-319 (792)
203 KOG2394 WD40 protein DMR-N9 [G 99.6 1.9E-14 4.1E-19 156.4 19.9 242 640-899 125-383 (636)
204 KOG4497 Uncharacterized conser 99.6 2.2E-13 4.8E-18 140.0 25.4 269 639-913 49-425 (447)
205 KOG1517 Guanine nucleotide bin 99.6 3.1E-14 6.8E-19 164.8 21.2 266 616-882 1087-1384(1387)
206 KOG0771 Prolactin regulatory e 99.6 1.1E-14 2.5E-19 155.0 16.1 191 642-834 148-354 (398)
207 PRK03629 tolB translocation pr 99.6 4.2E-13 9.2E-18 154.7 30.3 233 660-901 179-428 (429)
208 KOG2321 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 150.4 24.5 275 636-917 49-340 (703)
209 KOG1523 Actin-related protein 99.6 1.3E-13 2.7E-18 141.9 21.6 234 676-911 6-269 (361)
210 KOG1524 WD40 repeat-containing 99.6 2.9E-14 6.2E-19 154.5 15.6 205 651-876 76-283 (737)
211 KOG1009 Chromatin assembly com 99.6 1.8E-13 3.8E-18 144.8 20.7 238 627-884 112-377 (434)
212 KOG2111 Uncharacterized conser 99.6 5.7E-12 1.2E-16 129.8 31.0 231 640-880 7-257 (346)
213 KOG2315 Predicted translation 99.6 1.6E-12 3.5E-17 142.9 28.6 268 640-918 75-388 (566)
214 KOG0771 Prolactin regulatory e 99.6 3.1E-14 6.7E-19 151.7 14.9 194 684-917 148-351 (398)
215 PRK05137 tolB translocation pr 99.6 1.5E-12 3.3E-17 150.9 30.1 232 660-901 182-433 (435)
216 KOG4497 Uncharacterized conser 99.6 3.7E-13 8.1E-18 138.4 21.3 271 643-917 13-388 (447)
217 KOG3881 Uncharacterized conser 99.6 3E-13 6.6E-18 142.5 20.9 261 636-901 53-342 (412)
218 PRK04922 tolB translocation pr 99.6 9.4E-13 2E-17 152.4 27.3 232 660-900 184-432 (433)
219 PF10282 Lactonase: Lactonase, 99.5 4.8E-11 1E-15 133.9 37.9 271 627-898 26-345 (345)
220 PRK03629 tolB translocation pr 99.5 6.2E-12 1.4E-16 145.1 31.3 203 703-913 180-396 (429)
221 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.8E-19 163.2 9.3 246 627-883 221-472 (1113)
222 KOG2394 WD40 protein DMR-N9 [G 99.5 1.9E-12 4.1E-17 141.0 23.8 167 648-815 183-384 (636)
223 KOG1354 Serine/threonine prote 99.5 1.2E-12 2.6E-17 135.5 20.7 241 637-881 24-361 (433)
224 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-11 2.5E-16 139.0 30.1 251 630-885 70-353 (369)
225 PF10282 Lactonase: Lactonase, 99.5 8.3E-11 1.8E-15 131.9 37.2 266 653-918 2-320 (345)
226 PRK02889 tolB translocation pr 99.5 6.1E-12 1.3E-16 145.3 28.3 233 660-901 176-425 (427)
227 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.5E-17 137.1 20.7 235 679-918 54-318 (412)
228 KOG1240 Protein kinase contain 99.5 2.6E-12 5.7E-17 151.5 24.2 249 665-918 1034-1332(1431)
229 KOG2111 Uncharacterized conser 99.5 8.9E-12 1.9E-16 128.5 24.8 229 682-917 7-253 (346)
230 PRK02889 tolB translocation pr 99.5 4.1E-12 8.9E-17 146.7 24.9 221 632-859 189-424 (427)
231 KOG1334 WD40 repeat protein [G 99.5 4.1E-13 8.8E-18 144.8 14.6 249 670-918 132-422 (559)
232 KOG1409 Uncharacterized conser 99.5 2E-12 4.4E-17 134.1 18.9 250 626-880 12-271 (404)
233 KOG2321 WD40 repeat protein [G 99.5 3.8E-12 8.3E-17 139.6 21.5 238 678-918 49-300 (703)
234 KOG1310 WD40 repeat protein [G 99.5 3.4E-13 7.5E-18 146.6 12.9 179 671-878 41-230 (758)
235 PRK04922 tolB translocation pr 99.5 1.5E-11 3.2E-16 142.4 26.4 221 630-859 195-432 (433)
236 COG5354 Uncharacterized protei 99.4 4.5E-11 9.8E-16 130.1 27.8 288 620-918 55-393 (561)
237 TIGR02800 propeller_TolB tol-p 99.4 3.7E-11 8E-16 138.8 28.6 230 660-898 170-416 (417)
238 PRK05137 tolB translocation pr 99.4 3.4E-11 7.3E-16 139.6 27.9 202 702-911 182-397 (435)
239 KOG0322 G-protein beta subunit 99.4 2.6E-12 5.7E-17 128.9 15.0 203 629-833 46-322 (323)
240 KOG1272 WD40-repeat-containing 99.4 3.6E-13 7.8E-18 144.3 9.5 227 681-918 130-360 (545)
241 KOG2139 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 128.3 21.0 227 633-878 191-430 (445)
242 KOG2314 Translation initiation 99.4 5.4E-11 1.2E-15 130.2 25.8 267 640-912 251-559 (698)
243 PRK00178 tolB translocation pr 99.4 9.5E-11 2.1E-15 135.9 30.0 232 661-901 180-428 (430)
244 KOG0974 WD-repeat protein WDR6 99.4 6.2E-12 1.3E-16 147.2 19.6 265 637-918 6-286 (967)
245 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.1E-10 1.5E-14 121.9 33.9 256 660-918 27-328 (352)
246 PRK04792 tolB translocation pr 99.4 1.1E-10 2.4E-15 135.3 28.5 231 661-900 199-446 (448)
247 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3E-14 115.0 32.3 263 636-898 37-344 (346)
248 PF08662 eIF2A: Eukaryotic tra 99.4 4.5E-11 9.7E-16 122.2 20.0 108 804-918 58-177 (194)
249 PRK01029 tolB translocation pr 99.3 9.2E-10 2E-14 126.7 29.9 236 660-902 165-426 (428)
250 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-10 2.5E-15 119.2 19.5 148 684-834 9-179 (194)
251 KOG4594 Sequence-specific sing 99.3 1.1E-12 2.5E-17 131.7 4.2 65 5-70 13-77 (354)
252 KOG2315 Predicted translation 99.3 9.2E-10 2E-14 121.5 26.5 246 642-900 129-410 (566)
253 PRK04792 tolB translocation pr 99.3 4.3E-10 9.4E-15 130.4 25.5 219 632-859 211-446 (448)
254 TIGR02800 propeller_TolB tol-p 99.3 7.3E-10 1.6E-14 128.0 27.2 203 702-912 170-386 (417)
255 PRK00178 tolB translocation pr 99.3 5.9E-10 1.3E-14 129.3 26.1 220 631-859 191-427 (430)
256 KOG4190 Uncharacterized conser 99.3 1.9E-11 4.1E-16 132.8 12.3 278 630-916 727-1032(1034)
257 KOG4547 WD40 repeat-containing 99.3 6E-10 1.3E-14 123.9 23.4 184 648-835 3-221 (541)
258 KOG2041 WD40 repeat protein [G 99.3 4.6E-10 1E-14 125.7 22.4 274 637-916 13-333 (1189)
259 KOG0280 Uncharacterized conser 99.3 3.1E-10 6.7E-15 116.0 19.0 240 637-917 68-330 (339)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.8E-08 4E-13 110.9 34.3 248 627-885 36-336 (352)
261 PRK01029 tolB translocation pr 99.3 1.4E-09 3.1E-14 125.2 26.7 212 703-918 166-401 (428)
262 TIGR03300 assembly_YfgL outer 99.2 8.9E-09 1.9E-13 117.3 32.5 253 649-918 104-377 (377)
263 COG5354 Uncharacterized protei 99.2 2.3E-09 5E-14 117.0 24.4 274 632-918 26-346 (561)
264 KOG0280 Uncharacterized conser 99.2 6.5E-10 1.4E-14 113.7 18.1 197 640-836 123-335 (339)
265 COG2706 3-carboxymuconate cycl 99.2 3.8E-08 8.3E-13 104.3 31.8 259 659-917 15-318 (346)
266 KOG1354 Serine/threonine prote 99.2 7.8E-10 1.7E-14 115.0 18.3 238 679-918 24-357 (433)
267 KOG0974 WD-repeat protein WDR6 99.2 4.3E-10 9.4E-15 132.0 18.3 198 638-881 87-290 (967)
268 KOG0309 Conserved WD40 repeat- 99.2 1.2E-10 2.6E-15 130.9 12.9 278 638-918 24-337 (1081)
269 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.6E-13 114.2 31.1 253 649-918 64-336 (377)
270 KOG4547 WD40 repeat-containing 99.2 9.2E-10 2E-14 122.5 18.7 204 690-917 3-217 (541)
271 PF04762 IKI3: IKI3 family; I 99.2 3E-08 6.5E-13 123.1 33.4 279 636-918 73-454 (928)
272 COG4946 Uncharacterized protei 99.2 3.4E-08 7.3E-13 106.8 28.7 283 616-909 205-507 (668)
273 COG5170 CDC55 Serine/threonine 99.1 1.2E-09 2.6E-14 112.1 15.2 238 637-878 25-366 (460)
274 PLN02919 haloacid dehalogenase 99.1 5.1E-08 1.1E-12 123.3 31.7 232 684-918 571-886 (1057)
275 PLN02919 haloacid dehalogenase 99.1 7.3E-08 1.6E-12 121.9 32.5 239 642-883 571-892 (1057)
276 KOG2314 Translation initiation 99.1 3.9E-08 8.4E-13 108.3 25.2 269 641-918 213-523 (698)
277 KOG1064 RAVE (regulator of V-A 99.1 8.3E-10 1.8E-14 134.7 13.0 208 692-918 2180-2396(2439)
278 KOG1912 WD40 repeat protein [G 99.0 3.8E-08 8.1E-13 112.0 23.3 214 620-834 37-304 (1062)
279 COG4946 Uncharacterized protei 99.0 1.5E-07 3.2E-12 101.9 26.7 146 635-783 356-508 (668)
280 KOG1064 RAVE (regulator of V-A 99.0 1.5E-09 3.3E-14 132.4 12.2 224 633-913 2203-2439(2439)
281 PRK04043 tolB translocation pr 99.0 1.1E-07 2.4E-12 109.0 26.4 190 640-834 189-400 (419)
282 PF04762 IKI3: IKI3 family; I 99.0 8.1E-07 1.7E-11 110.6 35.7 257 633-911 205-507 (928)
283 PRK04043 tolB translocation pr 99.0 3.3E-07 7.1E-12 105.1 29.8 224 660-895 169-416 (419)
284 KOG0309 Conserved WD40 repeat- 99.0 1.6E-09 3.5E-14 122.0 10.0 217 619-835 95-340 (1081)
285 KOG1832 HIV-1 Vpr-binding prot 99.0 5.4E-10 1.2E-14 127.6 5.5 262 627-908 1090-1377(1516)
286 KOG1409 Uncharacterized conser 98.9 2.4E-08 5.1E-13 104.3 15.2 244 670-918 14-268 (404)
287 KOG4532 WD40-like repeat conta 98.9 2.5E-07 5.4E-12 93.8 21.3 247 659-911 51-323 (344)
288 KOG1912 WD40 repeat protein [G 98.9 1.2E-07 2.6E-12 108.0 20.3 261 639-918 16-302 (1062)
289 KOG0882 Cyclophilin-related pe 98.9 4E-08 8.6E-13 105.8 15.4 238 627-891 42-317 (558)
290 KOG4190 Uncharacterized conser 98.9 2.7E-09 5.8E-14 116.4 6.7 205 673-916 728-943 (1034)
291 PF13360 PQQ_2: PQQ-like domai 98.9 1.1E-06 2.4E-11 92.9 26.8 214 658-884 1-235 (238)
292 COG5170 CDC55 Serine/threonine 98.9 1.6E-08 3.6E-13 103.8 11.4 233 679-918 25-307 (460)
293 PRK11138 outer membrane biogen 98.8 1.3E-06 2.8E-11 100.2 27.7 252 650-918 120-392 (394)
294 KOG1645 RING-finger-containing 98.8 1.9E-07 4.1E-12 99.6 18.6 248 662-918 175-459 (463)
295 PF08450 SGL: SMP-30/Gluconola 98.8 1.1E-05 2.5E-10 86.0 32.3 214 643-868 4-244 (246)
296 KOG2041 WD40 repeat protein [G 98.8 7.1E-08 1.5E-12 108.5 15.1 229 680-911 14-279 (1189)
297 PF08450 SGL: SMP-30/Gluconola 98.8 1E-05 2.2E-10 86.3 31.4 216 684-908 3-243 (246)
298 KOG4532 WD40-like repeat conta 98.8 7.5E-07 1.6E-11 90.4 19.9 196 701-903 51-263 (344)
299 KOG3914 WD repeat protein WDR4 98.8 5.5E-08 1.2E-12 104.0 12.5 118 643-763 112-232 (390)
300 PF15492 Nbas_N: Neuroblastoma 98.8 4.5E-06 9.7E-11 86.4 25.3 224 644-918 3-257 (282)
301 PRK11138 outer membrane biogen 98.8 1.7E-06 3.7E-11 99.1 25.2 255 650-918 69-351 (394)
302 PF07433 DUF1513: Protein of u 98.7 9E-06 2E-10 86.7 28.0 245 641-911 7-277 (305)
303 KOG1645 RING-finger-containing 98.6 1.6E-06 3.4E-11 92.7 18.8 245 627-879 182-461 (463)
304 KOG1275 PAB-dependent poly(A) 98.6 2.2E-07 4.7E-12 107.9 13.2 270 635-918 51-340 (1118)
305 PF13360 PQQ_2: PQQ-like domai 98.6 5.7E-06 1.2E-10 87.5 23.4 209 700-918 1-228 (238)
306 KOG1832 HIV-1 Vpr-binding prot 98.6 2.3E-08 4.9E-13 114.7 4.9 201 669-884 1090-1296(1516)
307 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.3E-12 99.5 9.2 147 654-803 228-386 (425)
308 KOG4714 Nucleoporin [Nuclear s 98.6 6.7E-07 1.4E-11 90.5 13.4 165 629-794 80-255 (319)
309 PF04053 Coatomer_WDAD: Coatom 98.6 1.2E-05 2.6E-10 92.1 25.1 222 678-917 30-259 (443)
310 KOG4714 Nucleoporin [Nuclear s 98.6 8.5E-07 1.8E-11 89.7 13.5 240 641-918 39-316 (319)
311 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.9E-10 96.4 25.5 241 638-883 68-326 (1265)
312 PF00930 DPPIV_N: Dipeptidyl p 98.6 4.2E-05 9E-10 86.3 28.5 256 647-909 1-346 (353)
313 KOG3914 WD repeat protein WDR4 98.6 1.7E-06 3.7E-11 92.8 16.0 158 640-802 64-232 (390)
314 KOG4649 PQQ (pyrrolo-quinoline 98.5 6.9E-05 1.5E-09 76.2 26.2 255 649-918 62-349 (354)
315 KOG0882 Cyclophilin-related pe 98.5 8.7E-07 1.9E-11 95.7 13.3 233 678-912 7-298 (558)
316 PF14583 Pectate_lyase22: Olig 98.5 6.9E-05 1.5E-09 82.4 27.9 268 644-917 41-378 (386)
317 PF15492 Nbas_N: Neuroblastoma 98.5 2.2E-05 4.7E-10 81.4 21.9 180 640-836 45-261 (282)
318 KOG2066 Vacuolar assembly/sort 98.5 3.3E-06 7.1E-11 97.6 17.3 180 638-834 39-233 (846)
319 cd00216 PQQ_DH Dehydrogenases 98.5 6.1E-05 1.3E-09 88.6 28.0 256 650-918 61-422 (488)
320 PRK02888 nitrous-oxide reducta 98.5 3.1E-05 6.7E-10 89.8 24.1 255 648-909 139-450 (635)
321 KOG1008 Uncharacterized conser 98.4 1.7E-07 3.6E-12 105.2 4.0 241 637-878 55-334 (783)
322 KOG1275 PAB-dependent poly(A) 98.4 5.8E-06 1.3E-10 96.4 16.2 179 649-833 146-341 (1118)
323 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.3E-11 64.6 6.5 38 629-666 2-39 (39)
324 KOG3621 WD40 repeat-containing 98.4 5.4E-05 1.2E-09 86.8 22.9 118 637-755 32-155 (726)
325 KOG2114 Vacuolar assembly/sort 98.4 7.4E-05 1.6E-09 87.3 24.0 204 687-895 30-261 (933)
326 KOG2114 Vacuolar assembly/sort 98.4 0.00011 2.4E-09 85.8 25.3 211 620-834 6-243 (933)
327 PF02897 Peptidase_S9_N: Proly 98.3 0.00061 1.3E-08 78.7 31.9 240 640-886 125-411 (414)
328 KOG2066 Vacuolar assembly/sort 98.3 1.7E-05 3.7E-10 91.9 17.0 181 680-880 39-234 (846)
329 KOG3617 WD40 and TPR repeat-co 98.3 1.4E-05 3E-10 92.1 16.0 109 642-754 19-131 (1416)
330 PF07433 DUF1513: Protein of u 98.3 0.00021 4.6E-09 76.4 23.6 191 725-918 6-245 (305)
331 PF00400 WD40: WD domain, G-be 98.3 2E-06 4.4E-11 63.0 5.9 39 670-708 1-39 (39)
332 PF06433 Me-amine-dh_H: Methyl 98.3 0.0012 2.7E-08 71.5 29.1 255 660-918 17-318 (342)
333 PF08513 LisH: LisH; InterPro 98.2 1.1E-06 2.4E-11 58.3 3.5 27 10-36 1-27 (27)
334 COG3391 Uncharacterized conser 98.2 0.0017 3.7E-08 73.9 31.3 252 662-916 13-279 (381)
335 COG0823 TolB Periplasmic compo 98.2 0.00012 2.6E-09 83.6 21.7 190 713-907 182-386 (425)
336 KOG2695 WD40 repeat protein [G 98.2 2.1E-06 4.6E-11 90.0 6.6 126 637-764 251-386 (425)
337 PF11768 DUF3312: Protein of u 98.2 0.0014 2.9E-08 74.8 29.2 89 828-918 238-327 (545)
338 KOG1920 IkappaB kinase complex 98.2 0.00023 4.9E-09 86.3 23.8 226 680-917 68-319 (1265)
339 cd00216 PQQ_DH Dehydrogenases 98.2 0.00063 1.4E-08 80.1 27.8 225 651-884 111-429 (488)
340 PRK02888 nitrous-oxide reducta 98.1 0.00053 1.2E-08 79.8 24.6 181 732-918 201-402 (635)
341 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.002 4.3E-08 65.9 25.5 141 650-795 23-167 (354)
342 PF06433 Me-amine-dh_H: Methyl 98.1 0.0042 9.2E-08 67.4 28.8 237 642-887 39-328 (342)
343 COG3391 Uncharacterized conser 98.1 0.0011 2.3E-08 75.5 25.9 220 639-861 74-310 (381)
344 PF06977 SdiA-regulated: SdiA- 98.1 0.0019 4.2E-08 68.2 25.6 198 631-831 14-247 (248)
345 COG0823 TolB Periplasmic compo 98.1 0.00048 1E-08 78.8 22.3 194 670-871 182-391 (425)
346 PF04053 Coatomer_WDAD: Coatom 98.0 0.001 2.3E-08 76.3 24.7 219 634-879 28-262 (443)
347 PF08596 Lgl_C: Lethal giant l 98.0 0.0013 2.8E-08 74.6 24.7 258 640-910 3-326 (395)
348 PF06977 SdiA-regulated: SdiA- 98.0 0.0016 3.5E-08 68.8 23.3 197 718-917 16-247 (248)
349 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0015 3.3E-08 73.6 25.0 227 638-869 42-347 (353)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.0056 1.2E-07 72.5 30.0 184 650-838 69-337 (527)
351 PF00780 CNH: CNH domain; Int 98.0 0.0049 1.1E-07 66.8 27.6 221 648-884 5-260 (275)
352 KOG3617 WD40 and TPR repeat-co 97.9 0.00011 2.5E-09 84.9 14.2 70 641-710 62-131 (1416)
353 PF00780 CNH: CNH domain; Int 97.9 0.0033 7.2E-08 68.1 25.0 215 690-918 5-253 (275)
354 PF04841 Vps16_N: Vps16, N-ter 97.8 0.014 3E-07 67.0 29.5 189 661-861 62-271 (410)
355 COG3386 Gluconolactonase [Carb 97.8 0.0062 1.3E-07 66.6 25.0 216 686-909 30-274 (307)
356 PF03178 CPSF_A: CPSF A subuni 97.8 0.0023 5.1E-08 71.1 21.9 207 703-916 3-261 (321)
357 PF11768 DUF3312: Protein of u 97.8 0.00012 2.7E-09 83.0 11.5 74 636-711 257-330 (545)
358 COG5276 Uncharacterized conser 97.8 0.054 1.2E-06 56.8 29.4 271 638-918 86-367 (370)
359 PF08596 Lgl_C: Lethal giant l 97.8 0.00047 1E-08 78.1 15.7 228 627-877 75-336 (395)
360 KOG1008 Uncharacterized conser 97.7 1.2E-05 2.5E-10 90.9 1.6 196 681-880 57-276 (783)
361 PRK10115 protease 2; Provision 97.7 0.071 1.5E-06 65.4 34.0 238 639-884 127-399 (686)
362 PF02897 Peptidase_S9_N: Proly 97.7 0.019 4.1E-07 66.3 27.4 217 683-903 126-383 (414)
363 PF08553 VID27: VID27 cytoplas 97.6 0.0089 1.9E-07 72.4 24.5 213 692-907 493-759 (794)
364 PF04841 Vps16_N: Vps16, N-ter 97.6 0.015 3.3E-07 66.7 25.3 187 703-902 62-271 (410)
365 KOG4640 Anaphase-promoting com 97.6 0.00023 4.9E-09 80.9 9.6 99 634-733 16-115 (665)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.068 1.5E-06 63.4 30.2 146 651-798 121-338 (527)
367 PF14583 Pectate_lyase22: Olig 97.5 0.015 3.3E-07 64.3 22.5 240 666-911 16-303 (386)
368 PF03178 CPSF_A: CPSF A subuni 97.5 0.026 5.7E-07 62.7 25.0 211 661-876 3-262 (321)
369 PRK13616 lipoprotein LpqB; Pro 97.5 0.011 2.5E-07 70.5 22.3 210 659-875 328-564 (591)
370 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.17 3.7E-06 57.6 30.1 260 650-916 37-356 (418)
371 KOG2395 Protein involved in va 97.4 0.0029 6.3E-08 70.7 15.0 128 781-911 352-492 (644)
372 COG3490 Uncharacterized protei 97.4 0.032 6.9E-07 58.2 20.8 222 643-877 72-346 (366)
373 KOG3621 WD40 repeat-containing 97.3 0.0081 1.7E-07 69.5 17.1 152 679-833 32-196 (726)
374 PRK10115 protease 2; Provision 97.3 0.17 3.6E-06 62.1 30.0 198 681-886 127-353 (686)
375 KOG4499 Ca2+-binding protein R 97.3 0.052 1.1E-06 55.1 20.6 205 693-900 28-263 (310)
376 PF15390 DUF4613: Domain of un 97.2 0.063 1.4E-06 61.4 23.1 121 636-756 54-188 (671)
377 COG3386 Gluconolactonase [Carb 97.2 0.046 9.9E-07 59.9 21.7 185 638-825 65-275 (307)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.14 2.9E-06 58.2 25.9 88 643-732 6-117 (415)
379 KOG1897 Damage-specific DNA bi 97.2 0.32 6.9E-06 58.9 29.3 270 639-916 584-894 (1096)
380 PF08553 VID27: VID27 cytoplas 97.2 0.0053 1.1E-07 74.3 15.1 131 784-917 503-644 (794)
381 PF05694 SBP56: 56kDa selenium 97.2 0.12 2.7E-06 57.8 24.2 219 649-869 86-393 (461)
382 PF05096 Glu_cyclase_2: Glutam 97.2 0.2 4.3E-06 52.9 24.5 184 681-870 45-251 (264)
383 PF07995 GSDH: Glucose / Sorbo 97.1 0.23 4.9E-06 55.5 26.7 66 850-915 253-330 (331)
384 smart00320 WD40 WD40 repeats. 97.1 0.0011 2.3E-08 46.5 5.4 38 629-666 3-40 (40)
385 PRK13616 lipoprotein LpqB; Pro 97.1 0.062 1.3E-06 64.3 23.2 186 722-915 348-563 (591)
386 PHA02713 hypothetical protein; 97.1 0.036 7.8E-07 66.4 20.5 216 661-884 273-538 (557)
387 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.021 4.4E-07 51.8 13.8 101 641-749 2-109 (111)
388 KOG4441 Proteins containing BT 97.0 0.041 9E-07 65.7 20.6 228 648-884 283-551 (571)
389 smart00320 WD40 WD40 repeats. 97.0 0.0018 3.8E-08 45.4 5.6 39 670-708 2-40 (40)
390 COG3204 Uncharacterized protei 97.0 0.19 4.1E-06 53.2 21.8 188 634-823 81-301 (316)
391 PF05096 Glu_cyclase_2: Glutam 97.0 0.46 9.9E-06 50.3 24.9 192 627-826 32-251 (264)
392 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.049 1.1E-06 49.4 15.1 100 808-916 2-110 (111)
393 KOG2395 Protein involved in va 96.8 0.021 4.5E-07 64.2 14.3 141 691-834 344-500 (644)
394 KOG4441 Proteins containing BT 96.8 0.056 1.2E-06 64.6 19.1 216 691-913 284-534 (571)
395 PRK13684 Ycf48-like protein; P 96.8 1.2 2.5E-05 49.8 28.5 268 638-918 45-329 (334)
396 TIGR03074 PQQ_membr_DH membran 96.8 0.27 5.8E-06 60.6 24.7 112 650-764 194-354 (764)
397 KOG2444 WD40 repeat protein [G 96.7 0.0016 3.4E-08 65.9 4.5 139 694-836 32-179 (238)
398 PF14870 PSII_BNR: Photosynthe 96.7 1 2.2E-05 49.2 26.1 267 638-917 16-301 (302)
399 KOG1897 Damage-specific DNA bi 96.7 2.5 5.4E-05 51.6 30.9 240 638-883 353-619 (1096)
400 COG5276 Uncharacterized conser 96.7 1.1 2.5E-05 47.3 25.2 251 615-878 106-368 (370)
401 COG3204 Uncharacterized protei 96.7 0.48 1E-05 50.2 22.0 185 720-905 82-298 (316)
402 PF10647 Gmad1: Lipoprotein Lp 96.6 0.51 1.1E-05 50.5 23.2 184 725-908 25-226 (253)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.21 4.6E-06 56.7 20.4 42 766-807 310-351 (415)
404 KOG4499 Ca2+-binding protein R 96.6 0.26 5.7E-06 50.2 18.5 133 680-815 108-263 (310)
405 TIGR02604 Piru_Ver_Nterm putat 96.5 1.4 3E-05 50.0 27.1 102 639-742 14-142 (367)
406 KOG2079 Vacuolar assembly/sort 96.5 0.039 8.5E-07 66.9 14.6 101 649-753 98-202 (1206)
407 COG3490 Uncharacterized protei 96.5 0.2 4.4E-06 52.5 17.9 169 732-910 44-245 (366)
408 PHA02713 hypothetical protein; 96.5 0.19 4.2E-06 60.1 20.7 176 735-917 303-530 (557)
409 KOG2377 Uncharacterized conser 96.5 0.19 4E-06 55.8 18.2 119 637-757 65-188 (657)
410 KOG4640 Anaphase-promoting com 96.5 0.012 2.6E-07 67.3 9.6 79 680-761 20-99 (665)
411 COG1520 FOG: WD40-like repeat 96.4 2.3 5E-05 48.2 29.6 148 649-801 68-225 (370)
412 PF02333 Phytase: Phytase; In 96.4 1.4 2.9E-05 49.4 25.3 186 648-836 66-292 (381)
413 PLN00033 photosystem II stabil 96.3 2.7 5.9E-05 47.9 34.7 110 804-917 279-396 (398)
414 PF05694 SBP56: 56kDa selenium 96.3 2.8 6.1E-05 47.3 29.7 218 691-909 86-392 (461)
415 PF14870 PSII_BNR: Photosynthe 96.2 2.5 5.4E-05 46.2 29.2 220 680-911 16-253 (302)
416 COG4257 Vgb Streptogramin lyas 96.2 2 4.4E-05 45.1 23.1 236 640-888 63-314 (353)
417 PF10214 Rrn6: RNA polymerase 96.1 1.8 3.9E-05 54.0 27.3 177 678-880 77-277 (765)
418 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.5 7.5E-05 47.1 29.3 223 691-918 36-316 (418)
419 smart00667 LisH Lissencephaly 96.1 0.0083 1.8E-07 42.0 4.0 31 9-39 3-33 (34)
420 COG4257 Vgb Streptogramin lyas 96.1 1.1 2.4E-05 47.0 20.4 209 682-904 63-289 (353)
421 KOG2444 WD40 repeat protein [G 96.1 0.014 3E-07 59.2 6.7 133 654-794 34-167 (238)
422 KOG1916 Nuclear protein, conta 96.0 0.0029 6.3E-08 74.5 2.0 121 632-756 126-257 (1283)
423 COG3823 Glutamine cyclotransfe 95.9 0.18 3.9E-06 50.5 13.5 106 691-797 55-162 (262)
424 PF15390 DUF4613: Domain of un 95.8 0.49 1.1E-05 54.5 18.1 145 680-835 19-187 (671)
425 TIGR03074 PQQ_membr_DH membran 95.8 0.97 2.1E-05 55.8 22.0 66 738-803 262-354 (764)
426 PHA03098 kelch-like protein; P 95.7 0.36 7.8E-06 57.7 18.3 150 735-889 342-521 (534)
427 PF10168 Nup88: Nuclear pore c 95.7 0.8 1.7E-05 56.0 20.9 27 638-664 84-110 (717)
428 PF10168 Nup88: Nuclear pore c 95.7 1.9 4.2E-05 52.8 24.1 30 680-710 84-113 (717)
429 PF14761 HPS3_N: Hermansky-Pud 95.6 0.99 2.1E-05 46.1 17.8 56 651-707 29-92 (215)
430 TIGR03118 PEPCTERM_chp_1 conse 95.6 4.1 8.9E-05 43.7 25.7 197 640-837 24-282 (336)
431 PLN02153 epithiospecifier prot 95.6 1.2 2.7E-05 49.8 20.7 174 735-911 85-324 (341)
432 PHA03098 kelch-like protein; P 95.3 0.58 1.3E-05 56.0 18.0 181 648-836 293-513 (534)
433 KOG3630 Nuclear pore complex, 95.3 0.46 9.9E-06 58.3 16.3 139 640-781 102-261 (1405)
434 KOG2079 Vacuolar assembly/sort 95.3 0.11 2.4E-06 63.1 11.3 72 636-709 128-202 (1206)
435 COG1520 FOG: WD40-like repeat 95.3 6.9 0.00015 44.3 28.7 187 693-884 69-273 (370)
436 KOG2247 WD40 repeat-containing 95.2 0.0054 1.2E-07 68.1 0.0 140 681-823 35-177 (615)
437 PF10647 Gmad1: Lipoprotein Lp 95.1 3.2 7E-05 44.3 21.0 143 640-785 25-187 (253)
438 PRK13684 Ycf48-like protein; P 95.1 5.3 0.00012 44.6 23.6 147 680-832 172-329 (334)
439 smart00036 CNH Domain found in 95.1 6.8 0.00015 43.0 28.5 228 649-887 12-278 (302)
440 TIGR02604 Piru_Ver_Nterm putat 95.0 0.89 1.9E-05 51.5 17.2 105 805-911 71-204 (367)
441 KOG2280 Vacuolar assembly/sort 94.9 2.4 5.2E-05 50.4 20.2 191 638-836 43-248 (829)
442 COG5167 VID27 Protein involved 94.9 0.63 1.4E-05 52.4 14.8 189 558-755 423-633 (776)
443 KOG3630 Nuclear pore complex, 94.9 0.21 4.5E-06 61.1 11.9 142 682-824 102-262 (1405)
444 PLN02193 nitrile-specifier pro 94.8 11 0.00024 44.3 30.0 172 736-911 176-387 (470)
445 PF07995 GSDH: Glucose / Sorbo 94.8 3 6.5E-05 46.5 20.5 76 798-874 246-330 (331)
446 KOG1916 Nuclear protein, conta 94.7 0.017 3.6E-07 68.4 2.4 120 639-759 184-328 (1283)
447 PF10433 MMS1_N: Mono-function 94.7 12 0.00026 44.3 27.7 244 647-900 219-503 (504)
448 COG4247 Phy 3-phytase (myo-ino 94.7 6.4 0.00014 40.9 20.4 191 641-834 58-288 (364)
449 TIGR03548 mutarot_permut cycli 94.6 2.9 6.2E-05 46.4 19.8 100 736-836 73-196 (323)
450 PF12894 Apc4_WD40: Anaphase-p 94.5 0.11 2.3E-06 39.7 5.5 33 638-671 11-43 (47)
451 PF03022 MRJP: Major royal jel 94.5 6.9 0.00015 42.6 21.8 185 703-908 35-253 (287)
452 PF12234 Rav1p_C: RAVE protein 94.1 0.91 2E-05 54.1 15.0 125 627-754 18-156 (631)
453 KOG2280 Vacuolar assembly/sort 93.8 4.5 9.8E-05 48.2 19.3 175 702-884 64-251 (829)
454 PF13449 Phytase-like: Esteras 93.8 11 0.00023 42.0 22.3 141 724-866 20-231 (326)
455 PF12234 Rav1p_C: RAVE protein 93.8 1.4 3E-05 52.6 15.6 109 806-918 30-154 (631)
456 COG3292 Predicted periplasmic 93.8 3 6.5E-05 48.1 17.3 267 638-915 164-442 (671)
457 COG5167 VID27 Protein involved 93.7 1.5 3.2E-05 49.7 14.5 140 691-834 478-632 (776)
458 KOG2377 Uncharacterized conser 93.6 4.8 0.0001 45.1 18.0 148 644-795 28-187 (657)
459 PHA02790 Kelch-like protein; P 93.6 1.4 3.1E-05 51.9 15.5 177 649-835 271-471 (480)
460 TIGR03547 muta_rot_YjhT mutatr 93.6 7.4 0.00016 43.6 20.8 41 872-912 291-332 (346)
461 PF12894 Apc4_WD40: Anaphase-p 93.4 0.24 5.2E-06 37.8 5.5 31 680-710 11-41 (47)
462 PF10395 Utp8: Utp8 family; I 93.3 22 0.00047 42.8 24.1 152 762-918 128-303 (670)
463 PLN02193 nitrile-specifier pro 93.1 8.8 0.00019 45.1 21.1 148 735-886 228-417 (470)
464 PRK14131 N-acetylneuraminic ac 92.8 12 0.00026 42.5 21.1 13 747-759 190-202 (376)
465 PRK14131 N-acetylneuraminic ac 92.7 8.1 0.00018 43.9 19.5 39 873-911 314-353 (376)
466 PF14761 HPS3_N: Hermansky-Pud 92.7 4 8.7E-05 41.8 14.7 136 776-917 29-211 (215)
467 PF10433 MMS1_N: Mono-function 92.7 27 0.00058 41.4 27.4 224 689-917 219-473 (504)
468 PF08801 Nucleoporin_N: Nup133 92.5 6.2 0.00013 45.6 18.6 63 639-711 27-97 (422)
469 PLN02153 epithiospecifier prot 92.4 7.6 0.00016 43.4 18.6 40 871-910 217-260 (341)
470 PF14781 BBS2_N: Ciliary BBSom 92.3 4.4 9.6E-05 38.2 13.4 116 684-801 2-133 (136)
471 COG3823 Glutamine cyclotransfe 92.3 4.9 0.00011 40.6 14.4 169 649-824 55-247 (262)
472 KOG1983 Tomosyn and related SN 92.2 3.3 7.2E-05 52.8 16.7 227 639-883 36-268 (993)
473 PLN00033 photosystem II stabil 92.1 26 0.00056 40.1 24.8 108 765-876 282-396 (398)
474 KOG4460 Nuclear pore complex, 92.1 13 0.00029 42.5 19.0 81 681-761 104-205 (741)
475 KOG2247 WD40 repeat-containing 92.0 0.022 4.8E-07 63.4 -2.3 141 767-913 38-181 (615)
476 PF10395 Utp8: Utp8 family; I 92.0 4.3 9.4E-05 48.5 16.1 163 638-802 129-314 (670)
477 COG1770 PtrB Protease II [Amin 92.0 33 0.00071 40.9 24.2 198 682-884 130-353 (682)
478 PHA02790 Kelch-like protein; P 91.9 5.9 0.00013 46.7 17.6 167 736-911 272-456 (480)
479 PF07250 Glyoxal_oxid_N: Glyox 91.9 2.8 6E-05 44.2 13.1 129 787-915 48-194 (243)
480 PF08728 CRT10: CRT10; InterP 91.9 3.7 8E-05 49.6 15.5 74 805-878 163-245 (717)
481 TIGR03548 mutarot_permut cycli 91.7 9.2 0.0002 42.4 18.1 106 649-758 72-198 (323)
482 PF05935 Arylsulfotrans: Aryls 91.5 34 0.00074 40.2 25.2 114 686-804 153-312 (477)
483 KOG1900 Nuclear pore complex, 91.4 2.1 4.5E-05 54.0 13.0 160 658-836 97-274 (1311)
484 KOG2109 WD40 repeat protein [G 91.3 0.44 9.5E-06 55.3 6.9 78 626-703 303-391 (788)
485 COG1506 DAP2 Dipeptidyl aminop 91.2 31 0.00067 42.1 23.2 61 676-740 55-117 (620)
486 KOG4659 Uncharacterized conser 91.0 17 0.00037 46.0 19.7 22 804-825 660-681 (1899)
487 KOG1898 Splicing factor 3b, su 90.9 9.9 0.00021 47.1 17.6 59 701-763 911-971 (1205)
488 TIGR03547 muta_rot_YjhT mutatr 90.8 31 0.00068 38.5 22.1 61 649-711 17-94 (346)
489 KOG3616 Selective LIM binding 90.8 3.9 8.4E-05 48.2 13.6 176 639-836 15-195 (1636)
490 TIGR03606 non_repeat_PQQ dehyd 90.7 38 0.00082 39.3 32.1 59 634-692 25-90 (454)
491 KOG2006 WD40 repeat protein [G 90.5 2.2 4.8E-05 52.4 12.0 71 641-711 151-226 (1023)
492 PF13449 Phytase-like: Esteras 90.5 33 0.00071 38.1 22.4 142 680-823 19-232 (326)
493 KOG4659 Uncharacterized conser 90.4 55 0.0012 41.8 23.2 81 628-711 337-428 (1899)
494 KOG4460 Nuclear pore complex, 90.3 2.9 6.3E-05 47.5 11.8 9 703-711 62-70 (741)
495 PF08728 CRT10: CRT10; InterP 90.2 3 6.5E-05 50.3 12.7 112 641-753 103-245 (717)
496 smart00036 CNH Domain found in 90.2 33 0.00071 37.7 25.0 195 637-836 41-272 (302)
497 PF14781 BBS2_N: Ciliary BBSom 89.8 9.1 0.0002 36.1 12.8 115 642-761 2-132 (136)
498 TIGR01063 gyrA DNA gyrase, A s 89.3 69 0.0015 40.2 26.6 259 644-907 490-794 (800)
499 PF07569 Hira: TUP1-like enhan 89.2 2.2 4.8E-05 44.5 9.5 64 854-918 15-93 (219)
500 PF07569 Hira: TUP1-like enhan 89.1 2.5 5.4E-05 44.1 9.9 78 757-834 4-95 (219)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-45 Score=381.43 Aligned_cols=310 Identities=26% Similarity=0.448 Sum_probs=277.0
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
-++.|+|+|..+++ +.+.+|||+.+- .+..+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~t 152 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLFT 152 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Cccee
Confidence 47789999998887 445688987542 35677
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-eEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEE
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVW 707 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iw 707 (918)
.++|..-|.||+|+|||+.||+|+.||+|++||.++++.+ ..|.+|...|++++|.| ..++||+++.||+|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 8899999999999999999999999999999999987654 67899999999999977 57799999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEE-----------Eec
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQP 773 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~-----------~sp 773 (918)
|+.. +.++..+.+|+.+|+|++|-. ..+|++++.|++|++|+...|++.+.++++. +.++ |.+
T Consensus 233 d~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 233 DTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 9986 889999999999999999974 5589999999999999999999998887753 3333 333
Q ss_pred CCC-------------------------EEEEEEcCCeEEEEECCC-ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002471 774 HLG-------------------------RYLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGELLASVSED- 826 (918)
Q Consensus 774 ~~~-------------------------~ll~~~~dg~I~i~D~~t-~~~~~~l~~h~~~V~si~~spdg~~Las~s~d- 826 (918)
.+. .+++++.|.++.+|+... .+++..+.+|..-|+.+.|+||+++|++++.|
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 488999999999998765 45888899999999999999999999999999
Q ss_pred eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 905 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~L 905 (918)
.|++||.++| +.+..|.+|-..|+.++|+.|.+.|++|+.|.++++||+++.++. .+.+|.+.|.++.|+|||..+
T Consensus 390 SVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 390 SVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999988 788899999999999999999999999999999999999999988 789999999999999999999
Q ss_pred EEEecCCcEEEeC
Q 002471 906 ASASHDKFVKLWK 918 (918)
Q Consensus 906 asgs~Dg~I~IWd 918 (918)
++|+.|+.++||+
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-43 Score=366.14 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=263.3
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
.+-..+.||.+.|.|+.|+|+|++||+|+.|.++|+||+.+..+.++.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCC--CEEEEEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAA 782 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~--~~ll~~~ 782 (918)
..++....+.+.+|...|++|+|.|- ...+|++++.||.|+|||+..+.++..+.++...+.+...| +.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 99988888999999999999999873 23478899999999999999999999998876655544444 6788889
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSED 826 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----------pdg-------------------------~~Las~s~d 826 (918)
.|++|++|+...|++..++++|...|+.++++ |.+ +.|++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 223 359999999
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
++.+|+-... .+++..+.+|...|+.+.|+||+++|++++.|+.|++||.++|+.+ .+.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999987533 3678889999999999999999999999999999999999999988 89999999999999999999
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
|++|+.|.+++|||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-41 Score=352.72 Aligned_cols=287 Identities=27% Similarity=0.443 Sum_probs=266.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC--CCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~V 704 (918)
.......--+.+.+|..+.||.|++.||||+.+|.++||+..+...+.+|++|...|.++.|+|. +..||||+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 34444555578899999999999999999999999999999999999999999999999999996 6689999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
++|++++ ..++..+.+|...|..++|+|+|.+| +|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 68899999999999999999998755 5999999999999999987765554 56789999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 859 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp- 859 (918)
+.|..-+|||++++.++..+.+|...|.+|.|+|+|..|++|+.| +++|||++.. .+++.+..|.+.|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 56899999999999999998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999988 8999999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=325.04 Aligned_cols=291 Identities=20% Similarity=0.375 Sum_probs=265.1
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.+.++..++|++|.++|+++.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.|+++|+|+.|...
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 44778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC--C---ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEec-CC
Q 002471 705 RVWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HL 775 (918)
Q Consensus 705 ~Iwdl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp-~~ 775 (918)
.||++.+. . ...+.+.+|.+.+.|+.|.+| ..+ ++++.|.++.+||++++..+..|.++ +.++.+.| ++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-Cce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999864 1 345778999999999999985 444 49999999999999999999999865 56788899 88
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
+.|++++.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| ++++||++...+. .++.-......|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeeccCcccCCcee
Confidence 999999999999999999999999999999999999999999999999999 9999999986432 23333444678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++|+..|++|++|..|..+.+||.-.++.+ .+.+|+..|.||..+|||..|++|++|..||||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999888887 8899999999999999999999999999999994
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-37 Score=310.31 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=262.6
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|+++|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445677999999999999999999999999999999954 6677888999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
+++ +++++.+++|...|++++-+.-|..+|++++.||++++||+++..+++++ +.....+.|.-.+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 998 88899999999999999977778889999999999999999999999988 556788999999999999999999
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeccCCC----ceEEEEEeCC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 860 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~-~~i~~~~~~~~----~i~~i~~sp~ 860 (918)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+.| ++++||++..... .|+..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 45777766543 3567899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.++-+|+.|+.+++||.....++ .+.+|.+.|++++|+|...+|.+++.|++|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999997766 89999999999999999999999999999986
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.1e-38 Score=328.04 Aligned_cols=273 Identities=24% Similarity=0.390 Sum_probs=250.4
Q ss_pred CCcccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCcccee
Q 002471 554 TSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 630 (918)
Q Consensus 554 ~~k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~ 630 (918)
.......||.|+..+++ ++..+||+..++ ..
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----------------------------------------------~~ 209 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----------------------------------------------NL 209 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc----------------------------------------------ce
Confidence 34456788888887777 566677776533 45
Q ss_pred eeeeecCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 631 ANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+.+|++|++.|.++.|+|. +..||||+.||+|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-|+||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 6789999999999999996 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCC
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg 785 (918)
+++ +..+....||...|.+|+|++||. +++||+.|..-+|||+++++++-.+.++ +..+.|+|+|-.+++|+.|+
T Consensus 290 ~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 290 LET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 998 677788889999999999999976 7889999999999999999999999875 46789999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+++|||++...+++++.+|..-|+.|+|+| .|.+|++++.| +++||..++. .++..+.+|.++|.++.+++++.+
T Consensus 368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCce
Confidence 999999999999999999999999999998 77899999999 9999998776 788999999999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002471 864 LLVIGCYQSLELWN 877 (918)
Q Consensus 864 l~s~s~dg~I~vwd 877 (918)
|++++.|++|++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-34 Score=309.75 Aligned_cols=359 Identities=22% Similarity=0.352 Sum_probs=279.8
Q ss_pred cccEEEEcCCCeeec---cCCCeeEeCCCcch------------------hhhcccccccCCC-cCceeeeeccCCCCCC
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLEL------------------RADMDRLVEDGSL-DDNVESFLSHDDTDPR 613 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~------------------~~~~~~~~~~gs~-d~~v~~~~~~~~~~~~ 613 (918)
--...|||.|.|+++ ++.++|||....+. ..+-.|+.+.|.- ++....|+.+.+....
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 346789999999888 55679999865221 1122334443332 2223333333222221
Q ss_pred CCCC------------------------cccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002471 614 DAGG------------------------RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 669 (918)
Q Consensus 614 ~~~~------------------------~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~ 669 (918)
+..+ ....+..+..|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 1111 2344556778899999999999999999999999999999999999999999
Q ss_pred CceeeEec---cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------
Q 002471 670 LKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------------------------- 713 (918)
Q Consensus 670 ~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--------------------------------- 713 (918)
++.+..|. +|.+.|.+|+|+||+..|+|++.|.+++|||+.+..
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 99999998 899999999999999999999999999999997521
Q ss_pred ---------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-------------------------
Q 002471 714 ---------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------------------- 759 (918)
Q Consensus 714 ---------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------------------- 759 (918)
..++.+.+|...|+++..++++.+ |++|+.||.|.-||+.++..-
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 123455689999999999999865 559999999999998654210
Q ss_pred ------EEe------------------------------------------e-----------cCceEEEEecCCCEEEE
Q 002471 760 ------RVF------------------------------------------K-----------GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 760 ------~~~------------------------------------------~-----------~~~~~v~~sp~~~~ll~ 780 (918)
+.+ . -...+++++|++..+++
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 000 0 01134678889999999
Q ss_pred EEcCCeEEEEECCCceE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~--~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
|+.|+.|+||.+..... ...+..|..+|++|+|+||+.||+++... .|.+||+.+... ....+.-|..+|.+++|
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAW 538 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEe
Confidence 99999999999987643 33456799999999999999999999988 999999988754 44555668999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+...+++|+-|-.|.||+++..... ...+|...|+.+.|-.+ ..|++.+.|..|++|.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 999999999999999999999865433 45589999999999654 4788999999999995
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-35 Score=291.68 Aligned_cols=285 Identities=21% Similarity=0.376 Sum_probs=245.2
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-----CCceeeEeccCCCCeEEEEECCCCCEEEEEeC
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 700 (918)
.+....++++|++.|+.++..+. ...|++++.|++|.+|++. .|..++.+++|+..|..+..++||.+.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 34567789999999999999886 4789999999999999875 46778999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecC--
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH-- 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~-- 774 (918)
|+++|+||+.+ ++..+.|.+|...|.+++|++|...+ ++|+.|.+|++||+...-....... -+.+++|+|.
T Consensus 84 D~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 84 DGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cceEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999998 68899999999999999999997654 5999999999999986543333332 3689999999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
...++.++.|++|++||+++.+....+.+|...++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEe
Confidence 5788889999999999999999999999999999999999999999999999 9999999877 4555544 478899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E----Eccc-----CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~----~~~h-----~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++|+|+...|+. ..+..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 238 sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999998755544 45566999999998876 2 1222 23456789999999999999999999994
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=305.00 Aligned_cols=287 Identities=23% Similarity=0.405 Sum_probs=263.3
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
..|+..+.+.+|.+.|.||++.|...+|++|+.|++|+|||+.++.++.++.+|...|..|++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~ 782 (918)
.||++. .+.++.+.||-..|+|++.+|.-+ +|++|+.|.++||||+++...+.++.++ +..+.+.+.+..+++++
T Consensus 219 CwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999997 788999999999999999999855 6669999999999999999999998865 56677888899999999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
.|++|++||++.++...++..|...|++++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999999999999776 5566688889999999988776
Q ss_pred EEEEEEcCCeEEEEECCCCcEEE----Ec-----ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTMT----LT-----AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~~----~~-----~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++|+.+|.|.+||.+++.... .. ..+..|.+.+|+..|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 68889999999999999987651 11 2356799999999999999999999999996
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-35 Score=306.74 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=269.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+.+...+.+|...|+.+-|+|+-.++++++.|++|++||..++++...+++|.+.|.+|+|+..|++||+++.|=.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEc
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 783 (918)
||...-..+++.+.+|...|.+++|.|.|+++ ++|+.|.+|+.|++.++.|+++|.++. ..++...||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667889999999999999999998655 599999999999999999999998864 55667788888888889
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002471 784 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd---------------g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
|.+|++|-+.++.+...++.|+-+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999773 2489999999 9999999888 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.+.|..++|+|.|+||+++..|+++++||++.++++ .+..|+..|++++|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7889999999999999999999999999999994
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=330.23 Aligned_cols=287 Identities=30% Similarity=0.550 Sum_probs=256.2
Q ss_pred ceeeeeeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 628 FKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
+..+..+..| ...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|++++|++++.|++|
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 3345556554 8999999999999999999999999999998777 777888999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
+|||+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|++++..++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999976678999999999999999999998 7888999999999999999999999876 46778899999999999
Q ss_pred EcCCeEEEEECCCce--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc---eE
Q 002471 782 AAENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FH 853 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~--~~~~l~~h~~~--V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~---i~ 853 (918)
+.|+.|+|||+.++. ++..+.++... +++++|+|++++|++++.| .+++||+..+ .++..+..|... +.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEe
Confidence 999999999999999 66777776665 9999999999999999999 9999999877 556666666554 44
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--cCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h-~~~V~~la~spdg~~Lasgs--~Dg~I~IWd 918 (918)
+...++.+.++++|+.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4456789999999999999999999987766 78899 89999999999999999998 799999996
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=284.81 Aligned_cols=266 Identities=22% Similarity=0.433 Sum_probs=239.2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc-eeEEeccCCCCeeEE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 729 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl 729 (918)
-+|+++++|.+||+|...+|.+.+++....+.|+.+.+.|+++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 48999999999999999999999999988999999999999999999985 4599999998554 799999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CCC
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 806 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~ 806 (918)
.|..+|+. +++|++||+++|||++...+-+.|. ..+.++..+|.-..|+++..+|.|++||+.+..+...+.. ...
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999765 5599999999999999988777664 5788999999999999999999999999999877666543 456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN- 881 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~- 881 (918)
.|.++...|||.+|+.+... +.++|++-+. .....+..+..|...+..|.++|++++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999988877 9999999764 345677888999999999999999999999999999999999987
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.. .+.+|...|+.++|+.|+.||++|+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7889999999999999999999999999999997
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.7e-36 Score=312.87 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=247.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 45799999999999999999999999999988777788889999999999999999999999999999999874 3455
Q ss_pred EeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 718 TFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 718 ~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.+..|. ..|++++|+|++. .|++|++||+|+|||....+..+.+.+ .+.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 555555 9999999999755 556999999999999998887777766 46889999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg 871 (918)
++.|+.++.+|+..|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999855 6677888899999999999965 5677888999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 ~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.+|.+...+.+ .-.+|+..|++++|+|-|.+||+|+.|.++++|-
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999993
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-33 Score=299.34 Aligned_cols=281 Identities=25% Similarity=0.485 Sum_probs=245.9
Q ss_pred eeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCC--Cceee--Eec----------cCCCCeEEEEECCCCCE
Q 002471 630 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKT--NLE----------EHSSLITDVRFSPSMPR 694 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~--~~~~~--~l~----------~h~~~V~~l~fspdg~~ 694 (918)
.++.++ |+..|.+++|+|-.. +|++|+.|-+.++|++.. ..... .|+ ..+..|++|+|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344555 999999999999655 999999999999999863 11111 111 13467999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEE
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 771 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~ 771 (918)
||+|+.||.+|||+.. +..+.++..|.++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999987 678899999999999999999987665 99999999999999998877665432 44677
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
..+ ..|++++.|+.|+++.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||.+... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 654 678889999999999999999999999999999999999999999999999 9999998665 77888889999
Q ss_pred ceEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~i~~i~~sp~g~---------~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|..+.|+|+|. .+++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|||+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999754 5899999999999999999998 7889999999999999999999999999999995
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-32 Score=295.71 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.5
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
...+..+..|...|.+++|++++ .++++++.||.|++||+++++....+.. .+.++.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 5676777899999999998887777653 467889999977766666699999
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999988888999999999999999888888877 9999999875 5566666777899999999998888888
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 87999999999987766 6678999999999999999999999999999997
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=272.55 Aligned_cols=267 Identities=22% Similarity=0.338 Sum_probs=236.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
+.++.+++....+.|+.+.+.||+++||+++. -.||+||+.+.+ ++.+|.+|...|+.|.|..+|+.+++|++||++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 55788899988999999999999999999985 589999998654 689999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~ 780 (918)
+|||++. -.+-+.+ .|..+|+++..+|+-..|| +|+.+|.|++||+.+..|.+.+- ..+.++.+.+++..+++
T Consensus 108 kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 108 KIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred EEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 9999997 4444444 4789999999999977776 99999999999999887766543 35678899999999999
Q ss_pred EEcCCeEEEEECCCc------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 781 AAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+...|..++|++-+. +++..+..|...|..+.++||+++|++++.| +++||+.++. .+....+.+|...+.
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVW 262 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEE
Confidence 999999999998764 5667788999999999999999999999999 9999999865 566777888999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
.|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999999987 677888887777753
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=307.76 Aligned_cols=290 Identities=19% Similarity=0.361 Sum_probs=254.0
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4467888999999999999999 889999999999999999874 89999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~ 781 (918)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+. +.+..+.|.+++.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66766665 456789999999998888899999999999999999888775 456788999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEE
Q 002471 782 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 857 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~-h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~ 857 (918)
+.|+.|+||+.+....+..+.. +.-...+|..+|+++++++-+.| .|.||.+...-.....+.+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866654432 33456789999999999999999 99999876554444445555553 44567889
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 918 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg-~~Lasgs~Dg~I~IWd 918 (918)
+|||.+|++|..||.+.+||.++.+++ .+.+|...+..+.|+|.. ..||+|+.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999988 889999999999999954 4799999999999997
No 18
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-34 Score=297.00 Aligned_cols=287 Identities=19% Similarity=0.317 Sum_probs=241.1
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 701 (918)
.++..+...+..|++.|+-+.||++|+|||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 347788889999999999999999999999999999999998763 45588899999999999999999999999999
Q ss_pred CeEEEEeCCCCCceeEEe-ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCC
Q 002471 702 KTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG 776 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~ 776 (918)
..+++||+.+ +.+...+ .++...+.+++|.||+..++ +|+.|+.|..||++... ....+ ..+.++++.+||.
T Consensus 291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999998 4444433 34568999999999988766 99999999999997543 33322 2467889999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc--eE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH 853 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~ 853 (918)
++++.+.|..|++|+.++...+..+. ...+|++++.+.|++++++.-.+ .|.+||+... +.+..+.+|.-. +.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999998876664433 45789999999999998888888 9999999743 555566665433 33
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEeC
Q 002471 854 SCVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~s-p~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg-~~Lasgs~Dg~I~IWd 918 (918)
.-+|- .+..++++|++|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+||||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33443 35588999999999999999999998 899999999999999955 5799999999999994
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=271.59 Aligned_cols=281 Identities=22% Similarity=0.421 Sum_probs=239.7
Q ss_pred ceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCC---CceeeEec-cCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 628 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~---~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+.++..+.+|.++|..++|+|- |.+||+|+.|+.|+||+... ..++..+. +|...|++|+|+|.|++|++||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4577889999999999999998 99999999999999999884 44555553 7999999999999999999999999
Q ss_pred eEEEEeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeeEEeecC---ceEEEEecCC
Q 002471 703 TVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 775 (918)
Q Consensus 703 ~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~---~~~~~~~~~---~~~v~~sp~~ 775 (918)
++.||.-..+ -+++.++.||...|.|++|+++|. +|++|+.|..|-||.+..+ +|...+..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999976542 367889999999999999999976 6779999999999999854 466666654 5678899999
Q ss_pred CEEEEEEcCCeEEEEECC---CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 776 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~---t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 447899999999999999999999999999999 9999986532 11234678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK------TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~------~~--~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
++.+.|. ...|++++.|+.|+||...... ++ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 5569999999999999766431 11 34569999999999994 67899999999999994
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-33 Score=276.88 Aligned_cols=246 Identities=20% Similarity=0.327 Sum_probs=215.6
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
...++.++||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEecc--CCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEE
Q 002471 708 DADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 781 (918)
Q Consensus 708 dl~~~~~~~~~~~~--h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~ 781 (918)
++.. .+..++.. +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....|.++ ++.+.++|||..+++|
T Consensus 133 nt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 133 NTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 9985 44444443 37899999999985 557789999999999999999988888664 5778999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc---------CCCce
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC---------NGNKF 852 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~---------~~~~i 852 (918)
+.||.+.+||++.++.++.+. |...|.+++|+|+...|+.+....|+|||+.+.. ++.+++. .....
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEE
Confidence 999999999999999988776 7889999999998888887777799999998873 3333321 12335
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
.+++|+++|..|++|..|+.|++|.+.
T Consensus 287 lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 678999999999999999999999874
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=300.85 Aligned_cols=288 Identities=23% Similarity=0.388 Sum_probs=253.0
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~D-g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
..+..+..+.-...+|..++|+..|.+||.|+.. |.+.||++.+...+....+|...|+|++++|||.+||||++||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 4567788888888899999999999999998855 899999999998999999999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~ll~ 780 (918)
+|||..+ +.|+.+|..|+..|+.+.|+..+..++ +.+.||+|+.||+...++.++|..+ ..+++..|.|..+++
T Consensus 375 KvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999998 899999999999999999999876554 9999999999999999999998754 367888888888888
Q ss_pred EEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 781 AAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 781 ~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
|+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|++..|++++.| +||+||+-... ..+.++. ....+..++|+
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEc
Confidence 88876 79999999999999999999999999999999999999999 99999986431 1222222 36678999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EEc--------------------ccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKTM-TLT--------------------AHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~~-~~~--------------------~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|+|+.|++++.||.|.+||+..+..+ .+. .....++.|++++||.+|++|+....|+||
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999999999999999876543 111 123578999999999999999999999998
Q ss_pred C
Q 002471 918 K 918 (918)
Q Consensus 918 d 918 (918)
+
T Consensus 610 ~ 610 (893)
T KOG0291|consen 610 D 610 (893)
T ss_pred E
Confidence 5
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-32 Score=287.79 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
+..|++++|+.+|.+||+|++||.++||+. ++..+.+|..|+++|.+|.|+.+|.||++++.|+++.|||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999995 5778999999999999999999999999999999999999987 67777
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 794 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 794 (918)
.+.-|..+-.+|.|-.+. -|++++.|+.|+|+.+.....+.++.+ .+.++.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 888888887889998653 466999999999999998888888765 567899999999999999999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 795 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 795 ~~~~~~l~~h~~~V~si~~spdg---------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.|..|..+|++++|+|+|+++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999954 468888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++|+.||.|.+|++.+++++......+.|..++|+.+|.+|+.+-.|+.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=276.59 Aligned_cols=295 Identities=19% Similarity=0.267 Sum_probs=255.8
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 693 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~ 693 (918)
|.....|+...+ .....+.+|++.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-++|+|.+.
T Consensus 85 DD~AflW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 85 DDLAFLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred CceEEEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 333445555544 37788999999999999999999999999999999999999999999987788899999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEE
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQM 769 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v 769 (918)
.|+.|+.||.|.+|.+.+ +...+.+.||..++++=+|.|+|++++ ++..||+|++||..++..+..+.. ...++
T Consensus 162 illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred EEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 999999999999999997 577899999999999999999988766 999999999999999988887762 35677
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCC
Q 002471 770 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--------~h~~~V~si~~sp---dg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.+...+..++.+..++.+++....+++.+.... .+...+.||.+.| .-.++|+|+-| +|.|||+...
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~- 318 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS- 318 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-
Confidence 788888888999999999999999998888776 3444455555544 55688999999 9999999764
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|.++ .+.+|...|.+++++|+.++++|+|.|++.+|
T Consensus 319 ---~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 319 ---TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred ---hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 2333445677899999998 789999999999999999999988 89999999999999999999999999999999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 395 F~ 396 (399)
T KOG0296|consen 395 FE 396 (399)
T ss_pred Ee
Confidence 85
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=300.92 Aligned_cols=288 Identities=21% Similarity=0.314 Sum_probs=261.7
Q ss_pred cceeeeeeecCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fs-pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
+++..+.+-|..+.|.+++|- |+..+||+++..+.+|+|++.+..+. .+.+|...|.+++...+|.+|+||+.|.+|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 667778888999999999985 57789999999999999998887766 8899999999999666788999999999999
Q ss_pred EEeCCCC---CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee------------EEeecCceEEE
Q 002471 706 VWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQMR 770 (918)
Q Consensus 706 Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~------------~~~~~~~~~v~ 770 (918)
+|.++++ ..++....+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...+++++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988542 23456677999999999999988999999999999999999873211 11234688999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
+.|++..+++++.|.+.+||+++......++.+|+..|.|+.|++...++++++.| +|+||.+.++ .|+.++.+|.
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHT 547 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999876 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|..+.|-.+++.|++++.||.|+||++++++++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999998 8999999999999999999999999999999995
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-31 Score=293.10 Aligned_cols=322 Identities=21% Similarity=0.330 Sum_probs=256.1
Q ss_pred cccEEEEcCCCeeec--cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 556 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 556 k~~~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
-.++.|||||+..+. ++.+.||....... .. ...|...++
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P~~~~-~~-------------------------------------~~pFvl~r~ 140 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAPGEIK-NE-------------------------------------FNPFVLHRT 140 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecCcchh-cc-------------------------------------cCcceEeee
Confidence 458999999998666 44457776542210 00 116778899
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
+.+|.+.|.+|.|+.|.++|++|+.|.+++||+++..+. ...+.+|.+.|..+-|..+...|++.+.||.|.+|....
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~ 220 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDL 220 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecC
Confidence 999999999999999999999999999999999986665 667889999999999999999999999999999997761
Q ss_pred C----------------------Cce-----------eEEeccCCCCeeEEEEcC-------------------------
Q 002471 712 P----------------------GYS-----------LRTFMGHSASVMSLDFHP------------------------- 733 (918)
Q Consensus 712 ~----------------------~~~-----------~~~~~~h~~~V~sl~fsp------------------------- 733 (918)
. ++. ...+......|++.+|++
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~li 300 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLI 300 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEE
Confidence 0 000 001111123455555554
Q ss_pred -----------------CCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 734 -----------------NKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 734 -----------------~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.|+.+.+.|+.-|.+.||++.+...+....+ .+.++.++||+..+++|+.||.|+|||..
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 3343333333344555555554444444333 46789999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
++-|+.+|..|...|+.+.|+..|+.+++.+-| +|+.||+... ++.+++... .....|++..|.|..+++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999999999999999999999999999999 9999999765 566666543 34578899999999999999887
Q ss_pred -eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 -SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 -~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|+||++.+|+++ .+.+|+++|.+++|+|++..|+++++|.+||+||
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 8999999999999 7899999999999999999999999999999996
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-32 Score=305.90 Aligned_cols=275 Identities=24% Similarity=0.414 Sum_probs=240.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeEecc
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 678 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-------------------------------~~~~~l~~ 678 (918)
+..++..-...|+|+.|++|+++||.|..|..|++|.+... ...+++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34444445567999999999999999999999999987621 12344678
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
|.++|..+.|+|+.++|+++|.|++||+|.+++ ..++..+.||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888899999999999999985 6778999999999999999888
Q ss_pred eEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 759 TRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 759 ~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
.+.|.+ .+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||..+|.+++|+|+|++|++|++| .|.|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888876 46789999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE------------------------E-EEccc
Q 002471 835 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT------------------------M-TLTAH 889 (918)
Q Consensus 835 s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~------------------------~-~~~~h 889 (918)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|+.|++||+..-.. + .+...
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 87 67788888999999999999999999999999999999854221 1 33444
Q ss_pred CCCeEEEEEeCCCCEEEEEe
Q 002471 890 EGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 890 ~~~V~~la~spdg~~Lasgs 909 (918)
..+|.+|.|...+..|+.|.
T Consensus 685 ~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CceEEEEEEeccceeEEecc
Confidence 56788888887775555553
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=285.94 Aligned_cols=264 Identities=22% Similarity=0.470 Sum_probs=230.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
...+.|+|+.+. ...+++|..|.+|+|||..+..+++.+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 356789999995 4489999999999999999999999999999999999995 56999999999999999998 889
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 789 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i 789 (918)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.... +.+++.++. ..+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 99999999999999998 3477799999999999998754 334444543 444443 458889999999999
Q ss_pred EECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 790 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 790 ~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
|++.+++++.++.+|...|-|+.+. ++++++|+.| +|++||+..| .|+..+.+|+.-|.++.| +.+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecc
Confidence 9999999999999999999988865 8999999999 9999999888 899999999999999999 466799999
Q ss_pred cCCeEEEEECCCCcE---------E-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 869 CYQSLELWNMSENKT---------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 869 ~dg~I~vwd~~~~~~---------~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.||+|+|||+..+.- + .+..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976531 2 566799999999994 45799999999999997
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-32 Score=304.48 Aligned_cols=262 Identities=28% Similarity=0.468 Sum_probs=219.4
Q ss_pred cEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee
Q 002471 558 LMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 634 (918)
Q Consensus 558 ~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l 634 (918)
+.-|++|+..++. +..+++|.+...+++..-+ ..++..-+....|......|.. +-....++
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~------------~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L 447 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD------------ASDLSNIDTESADVDVDMLDDD---SSGTSRTL 447 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccc------------hhhhccccccccchhhhhcccc---CCceeEEe
Confidence 5567777775554 5566899987543322100 0111111222222222222222 23345569
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-|+||+|.|++.++|..+. ..
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~ 526 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NK 526 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+.+.+.+|-+.|.|+.|+|+.. ++++|+.|.+||+||+.+|.+++.|.++ +.+++|+|+|.++++|+.|+.|.|||
T Consensus 527 PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999965 6669999999999999999999999765 57899999999999999999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
+.+++.+..+.+|.+.|.++.|+.||.+||+++.| +|++||+...
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999999 9999999654
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=323.04 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.5
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----c----eeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 704 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V 704 (918)
+..|.+.|++++|+++|++||+|+.|++|+|||+... . .+..+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 356799999987 47899999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEe-cCCCEEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 781 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-p~~~~ll~~ 781 (918)
+|||+.+ +..+..+.+|...|++++|+|.+..+|++|+.||+|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778889999999999999986566778999999999999999988877654 45667775 457788899
Q ss_pred EcCCeEEEEECCCce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeccCCCceEEEE
Q 002471 782 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~---~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.| +|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998875 567788999999999997 67889999988 99999997542 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~--------------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998755322 1123556799999999999999999999999996
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=297.64 Aligned_cols=349 Identities=21% Similarity=0.352 Sum_probs=265.6
Q ss_pred EEEEcCCCeeec--cCCCeeEeCCCcchhhhcccccccCCCcCceeee-eccCCC----CCCCCCCcccccccCccceee
Q 002471 559 MMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 559 ~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~----~~~~~~~~~~d~~~~~s~~~~ 631 (918)
+.|+++|..+++ .+.+.+-|+.++... +. ....+ .++.+.++ +.+|+. ..+....+.|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 789999998887 333456788877652 11 11111 11222222 333321 122334466666655 778
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEe
Q 002471 632 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~-H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwd 708 (918)
+.++. |+++|.-++|+|.|.+|++|+.|+.|+|||+..+.+...|++|.+.|..+.|+|+-. .|++|..|+.|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 88887 999999999999999999999999999999999999999999999999999999654 589999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--------------------------
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 762 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------------------------- 762 (918)
+.+...++.++..|.+.|+++.|.+++..++ +++.|..|.|||+...++.+++
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9976667888999999999999999977666 8888999999997543211110
Q ss_pred --------------------ecC----c------------------------------------------eEEE------
Q 002471 763 --------------------KGG----T------------------------------------------AQMR------ 770 (918)
Q Consensus 763 --------------------~~~----~------------------------------------------~~v~------ 770 (918)
... . ..++
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 000 0 0000
Q ss_pred ----------------------------------Ee--cCCCEEEEEEcCCeEEEEECCCce------------------
Q 002471 771 ----------------------------------FQ--PHLGRYLAAAAENVVSILDAETQA------------------ 796 (918)
Q Consensus 771 ----------------------------------~s--p~~~~ll~~~~dg~I~i~D~~t~~------------------ 796 (918)
.. ..+-.+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 112244555556666666432100
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 797 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 797 ----------------------------------~~~----~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.+. +...|...|+|++++|+.++|++|+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123577888999999999999999999 899999974
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
......+.+|...|.++.|++....+++++.|++|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 4788999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=262.54 Aligned_cols=243 Identities=24% Similarity=0.437 Sum_probs=218.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC------ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 703 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 703 (918)
.+..+.-....|..++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.|+.|.. ...|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCce
Confidence 34445556778999999999999999999999999999854 45677899999999999997 458999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 780 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~ 780 (918)
+.+||+++ +..+..|.+|.+.|.+|++.|...+.+++|+-|+..++||++.+.++..|.++ +..++|.|++.-|++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88899999999999999999955566779999999999999999999999864 678999999999999
Q ss_pred EEcCCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
|+.|++.++||++....+..+.. ...+|++++|+..|++|++|..| ++.|||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999887777653 34579999999999999999988 9999999766 677888899999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEE
Q 002471 858 HPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd 877 (918)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=290.94 Aligned_cols=282 Identities=21% Similarity=0.386 Sum_probs=258.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
..+++..|+++|.||.|+|...+++++-+.|.|.|||.++...++.+.....+|++..|-...++|++|++|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeecC---ceEEEEecCC-CEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~~---~~~v~~sp~~-~~ll~~~~d 784 (918)
.+ ...+..|..|.+.|.||+.+|...++| ++++|-+|++||.+.+ .|..+|.++ +.+++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999987665 9999999999999876 677888876 4678899977 568888889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
++|+||.+....+.+++.+|...|+||+|-+.| .+|++|++| +|+|||..+. .|+.++.+|...|..+.|+|.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999876 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 862 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.|++|++||+|+||+..+-+.. ++.-..+.|+|++-.+.++.|+.|.+.|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999988776 56667789999999999999999998888764
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-31 Score=256.65 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=239.0
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-+....+..|.++|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEee---cCceEEEEecCCCEEEEEE
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~ll~~~ 782 (918)
|+.+ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|..|++||.++.. .+..+. ..+.++. -.+..+++|+
T Consensus 87 DV~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS 162 (307)
T KOG0316|consen 87 DVNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGS 162 (307)
T ss_pred Eccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeec
Confidence 9998 88999999999999999999874 577799999999999998764 444443 3344444 4457899999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce--EEEEEeC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHP 859 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i--~~i~~sp 859 (918)
.||+++.||++.+.......+ .+|+|++|++|++.+++++.| +|++.|-.++ +.+..+++|.+.- ..|++..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred cCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecc
Confidence 999999999999987766554 679999999999998889988 9999999888 5666666766543 3556777
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~-V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....++.|++||.|++||+...+.+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 7889999999999999999999888 56666666 789999998877777754 445555
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.7e-31 Score=271.17 Aligned_cols=242 Identities=27% Similarity=0.526 Sum_probs=222.3
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
..+++|++.|.+|+|+..|++||+++.|=.+++||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 45789999999999999999999999999999999986 78889999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCC------------
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHL------------ 775 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~------------ 775 (918)
+ +.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.++.|...+. ..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 8 89999999999999999999885 588899999999999999996655444 456777766531
Q ss_pred ---CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 776 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 776 ---~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..+.+++.|++|++||+.++.++.++.+|...|+.++|+|.|+||+++.+| +++|||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367778889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
++++.|+.+..++++|+-|..+++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999975
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=288.23 Aligned_cols=279 Identities=23% Similarity=0.403 Sum_probs=254.5
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++.+|...|++++||.|...+++|+ .+.|+||+.++.++++++... .+.|..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 35679999999999999988888775 669999999999999999754 899999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-----e----------eeEEeecCceEEEEecCCC
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-----S----------CTRVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~----------~~~~~~~~~~~v~~sp~~~ 776 (918)
...+.+...|.+.|++|+.+||+..++ +++.|.+|++||..-- . ..-.+...+.++.++|++.
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 677888889999999999999988766 9999999999997521 1 1122345778999999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 855 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 855 (918)
+++++--|++|+||-+.+.+....+.||.-+|.|+..+||++++++|+.| +|+||-+.-| .|-+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999 9999999766 7888899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|-|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999988877 8999999999999999999999999999999994
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=282.22 Aligned_cols=341 Identities=20% Similarity=0.322 Sum_probs=258.7
Q ss_pred CCCeeecc--CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCC-----CCCCCCcccccccCccceeeeeeec
Q 002471 564 DGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-----PRDAGGRGMDVSQGFSFKEANSVRA 636 (918)
Q Consensus 564 dg~~~~~~--~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~-----~~~~~~~~~d~~~~~s~~~~~~l~~ 636 (918)
.|.+.+.+ ..+-+||+++|+....+-.... ...+.+.+..++.. ..|+.++.|+.... ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~----k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKK----KAEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhcc----cceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 36666653 3446799999977665433111 12344445544433 35666777776654 67888999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
|...|+++.|+..|.+||+||.|+.|.|||+-...-...+++|++.|+..-|..+.++|+++|.|+.|++||+++ ..|+
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999998 7888
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-----------------------------------Ce---e
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----------------------------------GS---C 758 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-----------------------------------~~---~ 758 (918)
.+...|.+.|+.+++.+ .++++++.|+.+++|++.. .+ |
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 88889999999999986 3566888899999998710 00 0
Q ss_pred -------------------------------------------------------------eEEe---------------
Q 002471 759 -------------------------------------------------------------TRVF--------------- 762 (918)
Q Consensus 759 -------------------------------------------------------------~~~~--------------- 762 (918)
++.+
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0000
Q ss_pred ----------e------------------c---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEE------------
Q 002471 763 ----------K------------------G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL------------ 799 (918)
Q Consensus 763 ----------~------------------~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~------------ 799 (918)
. + .+..++++. ...+++.+..+.|.||+..+.+|++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 0 0 000111111 1233333445566666666554444
Q ss_pred ----------------------------EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----CcceE---
Q 002471 800 ----------------------------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----EGECV--- 842 (918)
Q Consensus 800 ----------------------------~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~-----~~~~i--- 842 (918)
++.+|++.|.+++.+||++.+++++.| +|++||+.--. ..+.+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 356788999999999999999999999 99999984321 11111
Q ss_pred --EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 843 --HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 843 --~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
..+ .-...|.|+.++||+++|+++--|.+|+||-+++-+.. .+.+|.-+|.|+.++||+++|+|||.|..|+||
T Consensus 501 ~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 501 HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 111 12567899999999999999999999999999998877 899999999999999999999999999999999
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=270.87 Aligned_cols=277 Identities=25% Similarity=0.435 Sum_probs=244.7
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
+..+-+.|..|||||.||++|+.||-|.|||..+|+..+.++ -+..+|.|++|+.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345668899999999999999999999999999998776654 478899999999999999999999999999
Q ss_pred eCCCCCceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEc
Q 002471 708 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 708 dl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 783 (918)
.+.+ +.|++.|. .|+..|+|+.|+.|+..++ +++.|-+|++.-+++|++++.|+++. +...|.++|.++++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9998 77887776 8999999999999988777 99999999999999999999999864 56789999999999999
Q ss_pred CCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEec---cCCCceEEEE
Q 002471 784 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---CNGNKFHSCV 856 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~ 856 (918)
||+|++|+..+.+|+.+++. .+.+|.++...|... .+++|... +|+|.++.. ..++.+. ..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988874 456788888888554 66666666 999998853 3444443 3456788999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999987 7889999999999999999999999999999996
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=260.18 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=246.9
Q ss_pred eeecCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp---dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|+...++.+..+-|+++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4568999999999986 8999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceEEEEecCCCEEEEEEcCC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
-+ +..+..|. |..-|.+++|+.|..+|| +|+.+..+||||++..+. +.-..+.+..+.|...+..+++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98 56666665 888999999999987766 999999999999987642 233345677888999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~ 865 (918)
+|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+...+|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 567899999999999998888889999999776 44444433 56788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEE-E-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 866 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~-~-~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+.|..++.||+.+++.+ . ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 4 379999999999999999999999999999993
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.1e-30 Score=253.07 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=248.1
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEe
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwd 708 (918)
+.+++|...|.+|+|+.+|..|++|+.|++++||+++..+.... .++|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66789999999999999999999999999999999987655443 568999999999998 466899999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
++. ++++.......+.|. +.|+|+|.+++ .++.|..|.+.|.++.+.+..+ +..+..+.|+.++..|+.....|.
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 666666665555555 88999987655 8999999999999998877654 456777889988888888888899
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~ 865 (918)
|.|......+++..++.|.....||.|+|+|++||+|+.| .+.+||+. +..|++.+..+..+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 99999995 4488888988999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC---------CcEEEe
Q 002471 866 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 917 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D---------g~I~IW 917 (918)
++++|..|-|=++.+|..+.-..+.++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 566665
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.2e-31 Score=280.08 Aligned_cols=258 Identities=25% Similarity=0.438 Sum_probs=223.6
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCE
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPR 694 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~ 694 (918)
......++++.+|.....+.+|...|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.. |...|++++|+|+...
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCce
Confidence 33455666777888888899999999999999999999999999999999976443 444554 5599999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEE
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 771 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~ 771 (918)
++++++||+|+|||... .+.-+.+.+|.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++.+ .+..+.|
T Consensus 195 F~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f 272 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKF 272 (464)
T ss_pred eEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEE
Confidence 99999999999999987 55667779999999999999984 5788999999999999999999987655 4567889
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
.+++++|++++.|..+++||+++.+.++++++|+..|+++.|+|-. .+|++|+.| .|..|.+...+ .....-..|.
T Consensus 273 ~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd 350 (464)
T KOG0284|consen 273 NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHD 350 (464)
T ss_pred cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccc
Confidence 9999999999999999999999999999999999999999999954 488888888 99999987332 2222334678
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
..|++++|+|-|..|++|+.|.++++|.-
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeecc
Confidence 89999999999999999999999999965
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.5e-29 Score=268.82 Aligned_cols=282 Identities=21% Similarity=0.392 Sum_probs=245.2
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEeCC----C
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----K 702 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g 702 (918)
..+..+.+|...|+-..|||.|.|+|+|...|+|||||... .-++.++....++|.+|.|+.|+++|++.++. |
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34667789999999999999999999999999999999764 34456677889999999999999999888763 3
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 779 (918)
.+.+||. +..+-.+.+|...|++++|-|....-+++|++|++|.+|+-.-.+...++.. -+.+++|+|++.+|+
T Consensus 130 ~~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 130 HVFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4566664 4567889999999999999999999999999999999998766555555443 468899999999999
Q ss_pred EEEcCCeEEEEECCCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---Cce
Q 002471 780 AAAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKF 852 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i 852 (918)
+++.||.|.|||-.+++.+..+. +|.+.|.+++|+||+..|++++.| +++|||+.+. .++.++.... ...
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceE
Confidence 99999999999999999999998 799999999999999999999999 9999999877 6666665433 334
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|.|. ...|++.+.+|.|.+++......+ .+.+|...|++++.++++++|++|+.||.|.-|+
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 566776 567999999999999999998866 7889999999999999999999999999999996
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-29 Score=249.78 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=237.6
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.+|..+|+-|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+|++..-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeeEEee---cCceEEEEecCCCEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 778 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl~~-------~~~~~~~~---~~~~~v~~sp~~~~l 778 (918)
++++..++ ...+|..+.|+.+|..++++.. ..+.|.++|++. .++...+. ..+..+.|.+.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 67777776 5678999999999876665442 347899999983 34344443 356678899999999
Q ss_pred EEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 779 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++.| +-++||+++. .+++++.. ..+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5566667899999999999999999999999 9999999876 56666654 78899999
Q ss_pred EeCCCCEEEEEEcCCeEEE--EECCCC------------cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 857 FHPTYPSLLVIGCYQSLEL--WNMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~v--wd~~~~------------~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++|...+++.|+.-...-| -+.+.+ +.+ .+.+|-++|++++|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999998888876543222 222333 223 678999999999999999999999999999984
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-29 Score=272.94 Aligned_cols=243 Identities=23% Similarity=0.365 Sum_probs=219.8
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++.++-..-+|+++.|-...+++++|+.|..|+||+..+++.++.|+.|.+.|+||+.+|...+++++|+|-+|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 44555566778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCC--CEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~--~~ll~~~~d 784 (918)
+..-.+..+|.||+..|.+|+|.|.+.+.+++|+-|++|+||.+....+..++++ ++.++++.+.+ .++++|+.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 9988899999999999999999999999999999999999999999998888876 56788887755 589999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.+|+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +||||...+. +....+.-....++|++..+.+..
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred ceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCe
Confidence 999999999999999999999999999999999999999999 9999998776 445556666788999999998888
Q ss_pred EEEEEcCCeEEE
Q 002471 864 LLVIGCYQSLEL 875 (918)
Q Consensus 864 l~s~s~dg~I~v 875 (918)
+++|...|.|.|
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 888777665543
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=284.36 Aligned_cols=282 Identities=22% Similarity=0.388 Sum_probs=251.4
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.++..+..|..++|+|.-.+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|-.|+||+..+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence 3556678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEcCCeEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSI 789 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i 789 (918)
.+++.++.||-+.|..+.|++.-..+| ++++|-+|+||++.+.+|+..+.++. .|..|+|....+++++-|-+|+|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 889999999999999999999877666 99999999999999999999998864 66779999999999999999999
Q ss_pred EECCCc-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 002471 790 LDAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 839 (918)
Q Consensus 790 ~D~~t~-----------------------------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~ 839 (918)
||+... -..+.+++|...|+-++|+|.-.+|++|++| .|++|.+...+ .
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-a 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-A 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-c
Confidence 997421 1234678999999999999999999999999 99999996543 2
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
-.+.+..+|.+.|.++.|||....|++.++|++|+|||+...+.+ ++....+..++++.+|..+++++| +|+-+.||+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFk 319 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFK 319 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEE
Confidence 455677889999999999999999999999999999999999888 676777889999999999887766 555565653
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.9e-29 Score=258.43 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=243.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.+.+|..|++.|.+|+.+|+.+++|||+.|..-.||++.++.....+.+|++.|+|+.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCe
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.+ +.....+......|.-++|+|.+ .+|++|+.||.|.+|.+.++...+.+.++ .++-.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 55555555566778889999975 56679999999999999998878888765 455679999999999999999
Q ss_pred EEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE-----EeccCC---CceEEEE
Q 002471 787 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-----ELSCNG---NKFHSCV 856 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~-----~~~~~~---~~i~~i~ 856 (918)
|++|+..++.+++.+... .....++.++..+..++.|+.+ .+++....+++...+.. ....+. ..|..+.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999888742 3457788888889999999888 78887777663222222 001222 2344555
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+..-+..++|+-||+|.|||+...++.....|...|..+.|.+ ..+|++++.||.|++||
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 66677889999999999999999999999999999999999998 77999999999999997
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.1e-29 Score=289.11 Aligned_cols=245 Identities=30% Similarity=0.486 Sum_probs=218.2
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-CCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~-~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
+...+.+|...|++++|+||+++|++++.|++|+|||+ ..++.++++++|...|++++|+|++++|++|+.|++|+|||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 34455889999999999999999999999999999999 56799999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEeec-----CceEEEEecCCCEEEEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~sp~~~~ll~~ 781 (918)
+++ +.+++.+.+|...|++++|.+++..+ ++++.|+.|+|||+.++. ++..+.. .+..+.|+|++.+++++
T Consensus 275 ~~~-~~~~~~l~~hs~~is~~~f~~d~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 275 VRT-GECVRKLKGHSDGISGLAFSPDGNLL-VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ccC-CeEEEeeeccCCceEEEEECCCCCEE-EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 998 89999999999999999999997755 577889999999999999 5555532 35778899999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEE
Q 002471 782 AAENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCV 856 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h~~~---V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~ 856 (918)
..|+.+++||+..+.++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+..| ...+..+.
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~ 429 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLS 429 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccc
Confidence 99999999999999999999998875 4444567789999999999 9999999875 566677777 78899999
Q ss_pred EeCCCCEEEEEE--cCCeEEEEECC
Q 002471 857 FHPTYPSLLVIG--CYQSLELWNMS 879 (918)
Q Consensus 857 ~sp~g~~l~s~s--~dg~I~vwd~~ 879 (918)
+++...++++++ .|+.|++|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 68899999764
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=269.74 Aligned_cols=289 Identities=20% Similarity=0.282 Sum_probs=245.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
.-.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 334566788999999999999998999999999999999987555 778888999999999999999999999999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcC
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
++|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++.....+..+......++++-.|
T Consensus 244 r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D 321 (459)
T KOG0288|consen 244 RLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD 321 (459)
T ss_pred eeeeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence 9999997 7788999999999999999876554 6699999999999999999998876555554444445667778889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec-cCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-~~~~~i~~i~~sp~g~ 862 (918)
+.|++||+++..+..+...+. .|+++..++++..|.+++.| ++.+.|+++.....+..... .....++.++|+|++.
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999999999999999988765 89999999999988888888 99999999874322221110 1133478899999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EEcc-cCC-CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM-TLTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~-~~~~-h~~-~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+++|+.||.|+||++.++++. .+.. +.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999988 3333 322 699999999999999999999999994
No 48
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5e-29 Score=266.59 Aligned_cols=292 Identities=16% Similarity=0.217 Sum_probs=235.8
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeeEec-cCCCCeEEEEECCCCCEEEEEe
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSS 699 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~----~~~~~l~-~h~~~V~~l~fspdg~~Lasgs 699 (918)
.+.......+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+. .....|.++.|++.+..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3456677789999999999999999999999999999999998732 2222222 3456799999999999999999
Q ss_pred CCCeEEEEeCCCCCcee------------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEee---
Q 002471 700 FDKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK--- 763 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~~--- 763 (918)
....++|+|-+. ...+ ...+||...++|.+|+|+....|++|+.||++||||+...+. +.+++
T Consensus 234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 889999999874 2222 233589999999999999988899999999999999987542 23332
Q ss_pred -----cCceEEEEecCCCEEEEEEcCCeEEEEECCCce---EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 764 -----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA---CRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 764 -----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
..+..++|++++..|++++.||.|.+||..... ..+.-..|.. .|+||.|++||++|++-+.| ++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 245778999999999999999999999976542 2233346777 89999999999999999988 999999
Q ss_pred CCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002471 833 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 905 (918)
Q Consensus 833 l~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~------dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~L 905 (918)
++..++...+..--.....-+.|+|+|+.+.|++|.. .+.+++||..+...+ .+......|..+.|+|.-+.|
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence 9987543333332333456788999999999999865 358999999998877 666668889999999998889
Q ss_pred EEEecCCcEEEe
Q 002471 906 ASASHDKFVKLW 917 (918)
Q Consensus 906 asgs~Dg~I~IW 917 (918)
+.|+.||.++||
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 999999999986
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=259.46 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=222.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 749 (918)
.+..+.+.+|.+.|.||++.|-+.+|++|+.|++|+|||+.+ +....++.||...|..+++++...++| +|+.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888899999999999999999877666 999999999
Q ss_pred EEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 750 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 750 iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
.||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...++.+.+|..+|.++.+.|...-+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 5678889999999999999999999999999999999999999999999988899999999
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
+|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999987 6677888889999999999998877777765 6999999999887 788999999999998887 7
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=263.20 Aligned_cols=272 Identities=21% Similarity=0.407 Sum_probs=227.9
Q ss_pred CceeeeeccCC---CCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE
Q 002471 599 DNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN 675 (918)
Q Consensus 599 ~~v~~~~~~~~---~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~ 675 (918)
+.|.+.-..|+ .+.+|..+++||.. +..+...+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n---~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKN---SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccc---cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 44444433333 34455555666554 667888999999999999995 55999999999999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 753 (918)
+.+|...|..+.|+ +.++++++.|.+|+|||+..+. .+.+.+.||...|+.+.|.. .+|++++.|.+|++|++
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEec
Confidence 99999999999997 4499999999999999998754 23467889999999999973 37889999999999999
Q ss_pred CCCeeeEEeecCceEEEEecC-CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002471 754 NNGSCTRVFKGGTAQMRFQPH-LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 831 (918)
Q Consensus 754 ~~~~~~~~~~~~~~~v~~sp~-~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iw 831 (918)
.++++++++.++...+++.-. +..+++|++|.+|++||++.|.++..+++|+.-|+||.|+ .+.+++|..| +|+||
T Consensus 348 st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 425 (499)
T ss_pred cceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEE
Confidence 999999999988777665544 4556667789999999999999999999999999999997 6789999999 99999
Q ss_pred ECCCCCCc------ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 832 TVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 832 dl~s~~~~------~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
|+..+... .|+..+..|.+.|..+.|. ...|++++.|.+|.|||+..+...
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 99876433 3677777888899999984 557999999999999999877544
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-27 Score=245.10 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=239.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC--CCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~V 704 (918)
+++..+.++.-.+.|+++.|+.+|.+|++++.|.+|+|||..+++.++++..++..|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566777778899999999999999999999999999999999999999999999999999888778777776 8999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-CceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~sp~~~~ll~~~~ 783 (918)
|.-++.+ .+.++.|.||...|++|+.+|-++.+ ++++.|++|++||++..+|...+.. +...++|.|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~F-lS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTF-LSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCeE-EecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 88899999999999999999997654 5999999999999999998887764 4566789999888888887
Q ss_pred CCeEEEEECCCc--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---CceEE
Q 002471 784 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFHS 854 (918)
Q Consensus 784 dg~I~i~D~~t~--~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i~~ 854 (918)
.+.|++||++.. .+..++. ......+.|.|+|||++|+.+... .+++.|.-+|. .+..+..+. ..-..
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLS 237 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCccee
Confidence 779999999964 2333332 346678999999999988877777 89999998885 444443332 23367
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~-h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++|+||+++|++|+.||+|.+|++++++.+ .+.+ +.+.+.|+.|+|.--+++++ +..+.+|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw 300 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW 300 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence 889999999999999999999999999988 5666 78999999999986666665 5567777
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=6.8e-29 Score=250.65 Aligned_cols=284 Identities=22% Similarity=0.392 Sum_probs=238.7
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~fspd 691 (918)
+...+..|..+++|.+|++||.++|||+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566788999999999999999999999999999999861 1356778899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------e
Q 002471 692 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------K 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~ 763 (918)
..+|++|+.|++|++||+.... +..+.|. ...+|.+|.|+|.|+.++ .|..-.++++||+++..|.... .
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999997532 1122232 457899999999988665 8888899999999998876543 4
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002471 764 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 764 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
+.+.++.+++.+..+++++.||.|+|||.-+++|+.++.. |. ..|.+..|..+++||++.+.| .|++|.+.++ +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5688999999999999999999999999999999998864 54 469999999999999999999 9999999888 6
Q ss_pred eEEEeccCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 841 CVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 841 ~i~~~~~~~~-----~i~~i~~sp~g~~l~s~s~d-g~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
++.++.+.+. --+...|.....|++.-.+. +.++-||.++...+ .-.+|.+.|+++.-+|.+.-+++|++|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 6666654321 12345677777777776553 58999999998776 4458999999999999999999999999
Q ss_pred cEEEeC
Q 002471 913 FVKLWK 918 (918)
Q Consensus 913 ~I~IWd 918 (918)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-28 Score=253.95 Aligned_cols=276 Identities=21% Similarity=0.365 Sum_probs=233.1
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.|.+-|.+|... ++.|++|++||.++|||. .|+....+.+|.++|.+++|.-... .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 679999999999999996 5889999999999999888865333 5999999999999999864
Q ss_pred Cce---eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeeEEeec
Q 002471 713 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 764 (918)
Q Consensus 713 ~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-------------------------~~~~~~~~ 764 (918)
... +....||...|-+|...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 322 3344599999999999999765 559999999999994321 11222333
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002471 765 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
.+..+.|++ ...+++++.|.+|+.||++++.++.++.+ ...++|+.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345567777 78899999999999999999999888774 5679999999999999999999 99999999997777
Q ss_pred eEEEeccCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc-EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 841 CVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~~~~~-~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|++|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999997765 6778899999999999887 44 889999999999995 45689999999999998
Q ss_pred C
Q 002471 918 K 918 (918)
Q Consensus 918 d 918 (918)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=255.90 Aligned_cols=276 Identities=24% Similarity=0.413 Sum_probs=238.7
Q ss_pred cEEEEcCCCeeecc---CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee
Q 002471 558 LMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 634 (918)
Q Consensus 558 ~~~fs~dg~~~~~~---~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l 634 (918)
+..|||||.|++++ +-+++||..+|+++.++.- ..-..+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY--------------------------------------QAqd~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY--------------------------------------QAQDNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhh--------------------------------------hhhcce
Confidence 56899999999984 4558899999998876532 112234
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.-+.+.|.|++||.|...||+|+.||+|+||.+.+|.+++.|. .|+..|+|+.|+.|+..|++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 4578899999999999999999999999999999999999998 8999999999999999999999999999999998 8
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCC-CEEEEEEcCCeE
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 787 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~-~~ll~~~~dg~I 787 (918)
++++.+.+|...|+...|.++|.++| +++.||+|++|+.++.+|+.+|+. .+..+...|.. ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988766 999999999999999999999874 34555666655 567788888999
Q ss_pred EEEECCCceEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 788 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+|.++. |..++.+.. ..+...+++.+|.|.++++.++| .++.|.+.++ .....+..|+..+..++-+|..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 556666543 34557788899999999999999 8999999887 667778888999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002471 864 LLVIGCYQSLELWN 877 (918)
Q Consensus 864 l~s~s~dg~I~vwd 877 (918)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.8e-28 Score=244.65 Aligned_cols=271 Identities=23% Similarity=0.365 Sum_probs=230.9
Q ss_pred cccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeee
Q 002471 556 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
.-.++|.|+|..+++++.. -||++.. ..+...
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g---------------------------------------------dceN~~ 84 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG---------------------------------------------DCENFW 84 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc---------------------------------------------ccccee
Confidence 4578999999988876544 4566432 123345
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~ 711 (918)
.+++|.+.|..+.|..|++.|++++.|++|+.||+++++.++.+++|...|+.+.-+.-|. +|.+++.||+++|||++.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 6779999999999999999999999999999999999999999999999999998554444 567788899999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
+..++++. ....++++.|...+..++ +|+-|+.|++||++...+..++.++ ++.+..++++..+++-+.|++|+
T Consensus 165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 66666664 457799999998887776 9999999999999999999998875 57788999999999999999999
Q ss_pred EEECCCc----eEEEEecCCC----CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 789 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 789 i~D~~t~----~~~~~l~~h~----~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
+||++-. .++..+.+|. .....++|+|++..+.+|+.| .+++||.... .++..+.+|.+.|.++.|+|
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence 9999864 5577777653 345678999999999999999 9999999765 78999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEE
Q 002471 860 TYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd 877 (918)
...+|++++.|++|++=.
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 999999999999998744
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.7e-27 Score=251.91 Aligned_cols=242 Identities=33% Similarity=0.609 Sum_probs=215.6
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
...+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++||+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34556788889999999999999999999999999999988889999999999999999998889988889999999998
Q ss_pred CCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeE
Q 002471 711 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 711 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
+ ......+..|...|.+++|+|++ .++++++.|+.|++||+++++.+..+.. .+.++.|++++..+++++.++.|
T Consensus 124 ~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 124 T-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred C-cEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 6 66777788899999999999984 4666777799999999998887776653 46789999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s 866 (918)
++||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|++
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999999998888899999999999998899988856 9999999875 556666678889999999999999999
Q ss_pred EEcCCeEEEEE
Q 002471 867 IGCYQSLELWN 877 (918)
Q Consensus 867 ~s~dg~I~vwd 877 (918)
++.|+.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-28 Score=240.00 Aligned_cols=276 Identities=21% Similarity=0.377 Sum_probs=230.0
Q ss_pred eEEEEEcc-CCCEEEEEe-------CCCcEEEEECCCCceeeEec--cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC
Q 002471 641 VICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs-------~Dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl 709 (918)
=+++.||| -.++||++. ..|++.|.++...+-+..+. .-.+.+.+|+|+++ .+.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36788998 334555443 36889999986444444433 35678999999995 557889999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE---EEEecCC-CEEEEEEcCC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL-GRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp~~-~~ll~~~~dg 785 (918)
..+..++..++.|...|.++.|++..+..+++++.|++|++|+......+.+|.++..+ ..|+|.. +.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999988888889999999999999999999999987655 5688876 4566677899
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-C
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 862 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~ 862 (918)
.+++||++..-....+..|...|.|+.|+. +.++|++++.| .|++||+++-+ ..+.++.+|+..|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999998655555899999999999998 45588999999 99999999765 5688889999999999999975 5
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~sp-dg~~Lasgs~Dg~I~IWd 918 (918)
.|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888899999999865543 6678899999999987 667999999999999996
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.9e-29 Score=267.72 Aligned_cols=247 Identities=18% Similarity=0.312 Sum_probs=219.0
Q ss_pred CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc
Q 002471 669 TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (918)
Q Consensus 669 ~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 747 (918)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.+|..++ +++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeeccee
Confidence 3456788899999999999999 8899999999999999999998999999999999999999999998877 9999999
Q ss_pred EEEEEcCCCeeeEEeec--CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002471 748 IRYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 748 I~iwdl~~~~~~~~~~~--~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 824 (918)
|++||+++|+++..|.. ...++.|.|++ +.|++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+.+++.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999998875 46889999999 8899999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEE
Q 002471 825 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALA 897 (918)
Q Consensus 825 ~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~----~~~~h~--~~V~~la 897 (918)
+| +|+||+.+.....+.+... ......+|..+|+++++++-+.|+.|.+|.+...-.. .+.+|. +.-..|.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99 9999999877544443332 2445678899999999999999999999987654333 566775 4567789
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 002471 898 VSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+|||++|++|+.||.|.+||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999997
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.8e-29 Score=257.78 Aligned_cols=281 Identities=17% Similarity=0.335 Sum_probs=236.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.-..+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..+|..|.+.|..|++.. ..+++++.|++|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 334566789999999999999977 7899999999999999999999999999999999999986 6899999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~ 782 (918)
.|.++. .+++++.+ ...+..|.-+.. ...++||+. .|.|||......+..+.- .+.++.|+|....+++++
T Consensus 133 ~wk~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 999985 36666654 445666766554 346778864 599999988888887763 457889999887776665
Q ss_pred -cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 -AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 -~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
+|+.|.+||++...++..+. -.-.-+.|+|+|.+-.|+++++| .++.||++... ..+..+.+|.+.|.++.|+|.
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCC
Confidence 79999999999998776654 23445789999988889999999 99999998653 567778889999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEc--ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~~~~--~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|..|++|+.|++|+||.++.+....+. ..-..|.|+.|+-|.+||++||+|+.|++|+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999999988765322 2335799999999999999999999999996
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-27 Score=268.28 Aligned_cols=242 Identities=25% Similarity=0.447 Sum_probs=210.9
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.+|.++|+.|+|+|...++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+||||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-----------------------------eeEEee
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----------------------------CTRVFK 763 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-----------------------------~~~~~~ 763 (918)
..++..++||...|.|..|+|..+ +|++++-|-+|||||+..-+ ....+.
T Consensus 125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 889999999999999999999744 77799999999999985321 111223
Q ss_pred c---CceEEEEecCCCEEEEEEcCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 764 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 764 ~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
+ ++..++|+|....+++|+.|..|++|.....+ .+.+..+|...|.++-|+|.-++|++.++| +|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 3 45668899999999999999999999887554 455678999999999999999999999999 9999999765
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..+..++.....++.++.+|..+.+++ +.|+.+.||.+..
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEcc
Confidence 778888878899999999999985554 5566677777763
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.1e-27 Score=235.71 Aligned_cols=266 Identities=22% Similarity=0.380 Sum_probs=215.8
Q ss_pred ccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeee-ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-
Q 002471 591 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD- 668 (918)
Q Consensus 591 ~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l-~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~- 668 (918)
+++.++-|+.++.|-.. .+-++.++..+ .+|+..|++|+|+|.|++||+|+.|.++.||.-.
T Consensus 29 ilAscg~Dk~vriw~~~----------------~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTS----------------SGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred EEEeecCCceEEEEecC----------------CCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 55666666666666432 22256677666 4899999999999999999999999999999865
Q ss_pred -CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 669 -TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 669 -~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
+++++.++++|...|.|++|+++|++||+++.|+.|-||.+.. .-.++..+..|...|.-+.|+|..+ ||++++.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccC
Confidence 5688999999999999999999999999999999999999984 3457789999999999999999744 77799999
Q ss_pred CcEEEEEcCC---CeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE
Q 002471 746 GEIRYWSINN---GSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 746 g~I~iwdl~~---~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~ 819 (918)
++|++|+-.. -.|+.++.++ +-++.|.+.|.++++++.|++|+||-..+.-. ..|...+..+.|. ...
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~ 245 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGV 245 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccc
Confidence 9999998772 3577777765 45688999999999999999999998663211 2277889999998 457
Q ss_pred EEEEeCC-eEEEEECCCCCC---cceE-EEeccCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 002471 820 LASVSED-SVRVWTVGSGSE---GECV-HELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 820 Las~s~d-~I~iwdl~s~~~---~~~i-~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~vwd~~ 879 (918)
|++++.| .|+||....... ...+ +.-..|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7887777 999998764311 1122 234567889999999995 6789999999999999864
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=271.30 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=199.8
Q ss_pred eeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC----------------------------------------
Q 002471 631 ANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---------------------------------------- 669 (918)
Q Consensus 631 ~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---------------------------------------- 669 (918)
...+. +|.+.|+|+.||+||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999997643
Q ss_pred --------------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEE
Q 002471 670 --------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 729 (918)
Q Consensus 670 --------------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl 729 (918)
.+++..|.+|.+.|.+|.|+.++ +|++++.|++||+|++.. ..|+.+|. |.+.|+||
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence 01122356899999999999765 999999999999999997 78888887 99999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C-
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H- 804 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h- 804 (918)
+|+|.++++|++|+-||.||||+|...+++.-. +.-++.++|.|+|...++|+.+|.+++|+.+..+....+.- |
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999998999999999999999999988877654 45678999999999999999999999999998776554321 1
Q ss_pred -----CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEEeCCCCEEEEEEcCCeEEE
Q 002471 805 -----TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLEL 875 (918)
Q Consensus 805 -----~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~sp~g~~l~s~s~dg~I~v 875 (918)
...|+.+.|.|... .|++.+.| .|||||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 22799999998443 45556666 9999999765 3444444332 33456689999999999999999999
Q ss_pred EECC
Q 002471 876 WNMS 879 (918)
Q Consensus 876 wd~~ 879 (918)
|++.
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9973
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8e-28 Score=251.30 Aligned_cols=277 Identities=19% Similarity=0.288 Sum_probs=232.3
Q ss_pred CcccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceee
Q 002471 555 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 631 (918)
Q Consensus 555 ~k~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~ 631 (918)
--..+.||++|+|+++.... -+|++. ....++.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~-------------------------------------------~d~~~kl~ 262 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVV-------------------------------------------YDVHFKLK 262 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEe-------------------------------------------cCcceeee
Confidence 45789999999999875433 345432 11157888
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
+++.+|..+|..|.||||.++|++|+.|..+++||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999999999999999999999999999999999999999888876 457889999999999999999999999999998
Q ss_pred CCCceeEEeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeE
Q 002471 711 NPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 711 ~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
. ..+..+.+-. ..|.+++..+||+.++ +.+.|..|++|+.++..++..+ ..++.++.++.++.++++.-.+..|
T Consensus 343 g--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 343 G--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred c--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 4 4444454433 5699999999999877 5557999999999887766444 3467889999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-
Q 002471 788 SILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP- 862 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~--V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~- 862 (918)
.+||++..+.+..+.||+.. |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|.+++|+|..+
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHH
Confidence 99999999999999998765 44445654 44699999999 9999999887 88999999999999999999765
Q ss_pred EEEEEEcCCeEEEEECCC
Q 002471 863 SLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~ 880 (918)
.+++++.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 578888999999998754
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=252.50 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=238.6
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
.+.|.+++|+|... -+|+.+ .-.|.||+..+...++++......|.+++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 45799999999543 344443 45799999998888888888899999999999999999999999999999655 6678
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCC-EEEEEEcCCeEEEEEC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 792 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~-~ll~~~~dg~I~i~D~ 792 (918)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998875555554 56777888766 5677888999999999
Q ss_pred CCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 793 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 793 ~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
+.. ..+.++. |..+|.++.+-|.|.+|++++...|+|||+.+|. ..+..+..|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5555554 9999999999999999999999999999998764 44555556899999999999999999999999
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 872 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 872 ~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.|++||+.+-+.+.-....++|.+|+++|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999998888877788899999999999999999999998754
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.9e-27 Score=269.94 Aligned_cols=270 Identities=27% Similarity=0.471 Sum_probs=238.0
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788899998 55899999999999999999998888 999999999999998888999999999999999887 89
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEE-EEecCCCEEEEEEcCCeEEEEECC
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
+..++.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++...| +..-+++.+++++.|++|.+||+.
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 9999999999999998874 467789999999999999999999988644332 233448899999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 872 (918)
++++++++.+|...|.++.+... ..+++|+.| +|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|++
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 99999999999999999988765 899999999 89999998764 788999998888865554 5678999999999
Q ss_pred EEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 873 LELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 873 I~vwd~~~~~~~-~~~~-h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 5666 67889999886 45788899999999997
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6e-27 Score=246.52 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=243.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
...|.++...+....++||+.|+++.++|......+.+|+||...|+.+.|+++...+++++.|..|+||.+.. ..+..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888778999999999999999999999999999999999999999999999999999999999987 45667
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
....|..+|+.+..+|.|+++| +++.||++.+.|++++.++..... ...+..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999988766 999999999999999998876654 3678899999999999999999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
.+...+..|.+|.++|..|.|+.+|.||+++++| .|++||+|..+..+.+.. .....+.++.|...|.+|++++.|=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 799999987654333322 1234799999999999999998877
Q ss_pred eEEEEECCCCc--EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 872 SLELWNMSENK--TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 872 ~I~vwd~~~~~--~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777755543 33 566788899999999999999999999999987
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-27 Score=228.83 Aligned_cols=267 Identities=24% Similarity=0.349 Sum_probs=229.9
Q ss_pred ccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..+.|.-||.|.++.+.. +||++..+ .++++
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------------~likt 54 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------------ALIKT 54 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------------ceeee
Confidence 467888899998885544 66766433 35678
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP- 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~- 712 (918)
+.+|...|..++.+.|...|++|+.|+.|.+||+++++.++.+++|.+.|+.++|+.+...+++|+.|.+|++||.++.
T Consensus 55 YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 55 YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS 134 (307)
T ss_pred ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+++..+....+.|.+|... ++.|++|+.||++|.||++.|.....+- .+++++.|+++++..++++.|++|++.|
T Consensus 135 ~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 35678888888999999997 4467799999999999999998877654 4789999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc-eEEEEEeCCCCEEEEE
Q 002471 792 AETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLLVI 867 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V--~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~sp~g~~l~s~ 867 (918)
-++++.+..+++|...- ..++++.....+++|++| .|++||+... ..+..+..+... +.++.++|.-..|+++
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEe
Confidence 99999999999997653 345677777799999999 9999999766 667777777766 8999999998888887
Q ss_pred EcCCeEEEE
Q 002471 868 GCYQSLELW 876 (918)
Q Consensus 868 s~dg~I~vw 876 (918)
...+ +.+|
T Consensus 289 ~~~~-~~~~ 296 (307)
T KOG0316|consen 289 TGHG-DLFW 296 (307)
T ss_pred cCCc-eece
Confidence 6544 4444
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.8e-26 Score=283.41 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=199.8
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++|+|+| ++.+|++|+.||+|+|||+.+ +.+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 45799999987 578999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+..+..+ ..|.++.|.+....+|++|+.||.|++||+++.+ .+..+. ..+..+.|. ++..+++++.|+.|+|||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 7777644 6799999976656677899999999999998765 344443 345677786 678899999999999999
Q ss_pred CCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--------eE--EEeccCCCceEE
Q 002471 792 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--------CV--HELSCNGNKFHS 854 (918)
Q Consensus 792 ~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~--------~i--~~~~~~~~~i~~ 854 (918)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|+||+........ .+ .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 975 35778899999999999999999999999999 99999986542110 00 011234556999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 855 CVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 855 i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
No 69
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.5e-26 Score=261.71 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=200.5
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCc-------eeEEeccCCCCee
Q 002471 656 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 727 (918)
Q Consensus 656 gs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~-------~~~~~~~h~~~V~ 727 (918)
|+.++.|+||+......+..+.+|...|.+|+|+|+ +.+||+|+.||+|+|||+.+.+. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888999999999999999996 78999999999999999986332 3456789999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC
Q 002471 728 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 728 sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 805 (918)
+|+|+|++..+|++++.|++|+|||++++..+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988766553 457889999999999999999999999999999999999998
Q ss_pred CCeEEE-----EEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002471 806 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 875 (918)
Q Consensus 806 ~~V~si-----~~spdg~~Las~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~v 875 (918)
+.+.+. .|++++.+|++++.+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 345788888887655 5999999865433333344444444444445566888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 002471 876 WNMSENKTMTL--TAHEGLIAALAVSTET 902 (918)
Q Consensus 876 wd~~~~~~~~~--~~h~~~V~~la~spdg 902 (918)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999864
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-27 Score=237.17 Aligned_cols=287 Identities=17% Similarity=0.325 Sum_probs=243.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+..++.+.||.+.|+.++....-.++.+++.|.+.+||.+++++|+.++.+|.+.|+||+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EeC------CC-----------------------------C----CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc
Q 002471 707 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 747 (918)
Q Consensus 707 wdl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~ 747 (918)
|.. .. . ..++..+++|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 962 10 0 023567789999999999998777655 9999999
Q ss_pred EEEEEcCCCeeeEEeecCc---eEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 748 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 748 I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
..+||+++++.+..+.++. +.++.+|....+++++.|.++++||.+.. ..+..|.+|...|+++.|.-+ ..+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence 9999999999999988764 44566777788888888999999999964 567789999999999999874 467889
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 002471 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 897 (918)
Q Consensus 824 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-----~~~h~~~V~~la 897 (918)
++| +|+|||+++.. ..+..+.. ..++..++.+..++.|+.-..++.|++||+...++.. ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998754 23333332 6778889999888888888888899999999887664 347999999999
Q ss_pred EeCCCC--EEEEEecCCcEEEeC
Q 002471 898 VSTETG--YVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~--~Lasgs~Dg~I~IWd 918 (918)
|..+.. -|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 378999999998885
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=233.17 Aligned_cols=270 Identities=16% Similarity=0.272 Sum_probs=222.9
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCC-Ccee-eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.-.+.|.+|+||| ...+|+.++.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 3567899999999 556777999999999999985 3333 44557999999999999999999999999999999998
Q ss_pred CceeEEeccCCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+ .+..+..|.++|.++.|.+... .+|+||+.|.+|++||.+....+.++..+..+.+.......++++..++.|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 3 5677778999999999987643 3678999999999999999999998888888878777778899999999999999
Q ss_pred CCCceEEEEe-c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---------CceEEEEEeC
Q 002471 792 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 859 (918)
Q Consensus 792 ~~t~~~~~~l-~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---------~~i~~i~~sp 859 (918)
++.+...+.. . .-.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..|++|. ..|.+|+|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876433221 1 123458899999988877778766 888888877533 4444555554 2477899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 860 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
....|+++|.||++.+||-.....+ ....|..+|+|++|+.+|.++|.+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999887766 678899999999999999988765
No 72
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=258.87 Aligned_cols=263 Identities=15% Similarity=0.230 Sum_probs=207.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-------------eEeccCCCCeEEEEECC-CCCEEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-------------TNLEEHSSLITDVRFSP-SMPRLATSSFDK 702 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 702 (918)
|...|+...+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666667777666677766666667764432221 24678999999999999 888999999999
Q ss_pred eEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEec
Q 002471 703 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp 773 (918)
+|+|||+.+.+ .++..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.+ .+.++.|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997642 356788999999999999998777888999999999999999988877754 467899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEecc
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las~s----~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|++||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999888765 45678999888777654 24 899999987543 2333222
Q ss_pred -CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCC
Q 002471 848 -NGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 901 (918)
Q Consensus 848 -~~~~i~~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~~~~--~~h~~~V~~la~spd 901 (918)
....+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 234456677999999999888 499999999999887732 235567788888775
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.5e-26 Score=267.13 Aligned_cols=277 Identities=20% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCCeEEEEEccCCCEEEEEe--CCCcEEEEECCC------------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs--~Dg~V~iwd~~~------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+...|.+|+.+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455699999999999999999 999999998642 234556678999999999999999999999999
Q ss_pred eEEEEeCCC------C-----------CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC
Q 002471 703 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765 (918)
Q Consensus 703 ~V~Iwdl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 765 (918)
.|.||+... . -+++..+.+|...|.+++|+|++ .++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 13577889999999999999975 47779999999999999999998888765
Q ss_pred ---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002471 766 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 831 (918)
Q Consensus 766 ---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~si~~spdg~~Las~s~----d-~I~iw 831 (918)
+..+.|.|-|.+|++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5678999999999999999999999988877777766543 35789999999999998642 2 78888
Q ss_pred ECCCCCCcceEEEeccCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCcEEE--EcccCCC
Q 002471 832 TVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTMT--LTAHEGL 892 (918)
Q Consensus 832 dl~s~~~~~~i~~~~~~~~~i~~i~~sp~-------------g~----~l~s~s~dg~I~vwd~~~~~~~~--~~~h~~~ 892 (918)
+-.+. ++-..+.+|..++.++.|+|. .. .+++|+.|++|.||.....+.+. ..-....
T Consensus 251 eR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 87543 677788899999999999872 11 57889999999999998777763 3345678
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 893 IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 893 V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|.+++|+|||..|+.||.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=233.97 Aligned_cols=251 Identities=19% Similarity=0.277 Sum_probs=223.9
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-.-+.++++|.+.|+..++..+..+.|+++.|-+.+|||.-++..+..|. |...|..++|+.|.++|++|+.++.+|||
T Consensus 49 gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 49 GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVF 127 (334)
T ss_pred CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhh
Confidence 34467899999999999999999999999999999999999999999886 88899999999999999999999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg 785 (918)
|++.+..+...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+..+. .++.++.++.+ +.+++.+..+
T Consensus 128 dln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gs 205 (334)
T KOG0278|consen 128 DLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGS 205 (334)
T ss_pred hccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCc
Confidence 99998899999999999999999998866666 77899999999999999888764 57888999988 4566777788
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.|.+||..+...++.++ -...|.+..++|+..++++|++| .++.||..++.+..+. .++|.++|.|+.|+|+|...
T Consensus 206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCcee
Confidence 99999999998888766 45679999999999999999999 9999999998654441 47899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEE
Q 002471 865 LVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~ 884 (918)
++|+.||+|+||-...++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998776544
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-26 Score=252.80 Aligned_cols=266 Identities=22% Similarity=0.427 Sum_probs=227.5
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc-
Q 002471 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG- 721 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~- 721 (918)
-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||+.+ .+.++.+.+
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC
Confidence 36677 444777775 55899999999887777766689999999999999999999999999999987 666777777
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-ee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
|...|-+++|. ..++.+|+.|+.|..+|++....... +. ..+..+.|++++..++.++.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 44777999999999999998765443 33 3456688999999999999999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc--CC
Q 002471 798 RLSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQ 871 (918)
Q Consensus 798 ~~~l~~h~~~V~si~~spd-g~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg 871 (918)
+..+..|...|..++|+|- ..+||+|+ .| +|++||+.++.. +..+. ....|..+.|++..+.|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---ecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999994 44888875 34 899999998743 33332 2788999999999988887755 45
Q ss_pred eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 872 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 872 ~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=231.53 Aligned_cols=245 Identities=23% Similarity=0.410 Sum_probs=206.8
Q ss_pred CccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCC
Q 002471 625 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 702 (918)
Q Consensus 625 ~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 702 (918)
.+++.+...+..|.+.|+|++.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 34778889999999999999996 88999999999999999999999999999999999999999765 899999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~ 782 (918)
.|.+|++.. ..++.++++|.+.|+.|+.+|.++ |.++.+.|+.+++||+-+|+.-...+.
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------ 167 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNL------------------ 167 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeecc------------------
Confidence 999999997 688999999999999999999976 666888899999999988764433221
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
...-+.|.|+|.|.+|+.+..+.|-||.+.+... +.++.. ...+.++.|- ++.
T Consensus 168 ----------------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v---~~~i~~-~~r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 168 ----------------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV---FREIEN-PKRILCATFL-DGS 220 (362)
T ss_pred ----------------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhH---hhhhhc-cccceeeeec-CCc
Confidence 1112338999999999999999999999876522 222211 2446666664 567
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~--spdg~~Lasgs~Dg~I~IWd 918 (918)
+|++|+.|+.|.+||..+..+. .+.+|...|.++.+ .|++.+|+|++.||.|+|||
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 8999999999999999987777 78899999999985 56788999999999999997
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-24 Score=209.82 Aligned_cols=287 Identities=21% Similarity=0.298 Sum_probs=234.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------C---------ceeeEeccCCCCeEEEEECCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L---------KSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------~---------~~~~~l~~h~~~V~~l~fspd 691 (918)
.|+.+..++ .+..|++++|+|.|.+.|+|+..++++|.-... + ...+.-+.|.+.|.|++|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 555666554 566899999999999999999999999874321 1 112234568999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCc----eeEEeccCCCCeeEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeeEEee
Q 002471 692 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs-~Dg~I~iwdl~~~~~~~~~~ 763 (918)
|.+|++|+.|++|++.-++.... .-..|.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987764221 23456779999999999654 445666554 57889999999998888887
Q ss_pred cCceEE-E-EecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 764 GGTAQM-R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 764 ~~~~~v-~-~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
++...+ + ++..+-.+++++.|.+|++||++-..++.++.. | ...|.+++.+|.|++|++|-.| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 765432 2 445556777788899999999999988887653 2 2569999999999999999999 8999999
Q ss_pred CCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 834 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 834 ~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~-----~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
+.+ ..+..+..|...|.++.|+|.-.|+++++.|..|++-|+...- .+.+..|...+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 987 7888999999999999999999999999999999999987542 33566899999999999999889999
Q ss_pred ecCCcEEEe
Q 002471 909 SHDKFVKLW 917 (918)
Q Consensus 909 s~Dg~I~IW 917 (918)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-26 Score=227.04 Aligned_cols=247 Identities=21% Similarity=0.342 Sum_probs=205.7
Q ss_pred ceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeE
Q 002471 628 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V 704 (918)
+.+...+. -.+.+..++|++. .+.+++++.||+++|||+. ...++..+++|...|.++.|++ ++..++++|.|++|
T Consensus 51 i~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 34444443 3567999999995 4688999999999999965 5578899999999999999998 55678888999999
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCE-EEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~-ll~ 780 (918)
++|+... ...+.++.+|...|+...|+|...+++++++.|+++++||++.......+.. .+.++.|+..... +++
T Consensus 130 KLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 130 KLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred EeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 9999987 6778999999999999999999999999999999999999987543333443 5567778776654 556
Q ss_pred EEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 781 AAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
++.|+.|++||++.- .++.++.+|.-.|+.|+|+|... +|++++.| ++||||..... .++.....|..-+..+.|
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW 286 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence 677999999999975 67888999999999999999655 99999999 99999997542 456666677778888888
Q ss_pred eC-CCCEEEEEEcCCeEEEEEC
Q 002471 858 HP-TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 858 sp-~g~~l~s~s~dg~I~vwd~ 878 (918)
++ +..+++.++.|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 87 5678999999999999984
No 79
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=247.92 Aligned_cols=347 Identities=14% Similarity=0.201 Sum_probs=266.7
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCC-------------------cCceeeeeccCCCC----CCCCCCcccccccCcc
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSL-------------------DDNVESFLSHDDTD----PRDAGGRGMDVSQGFS 627 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~-------------------d~~v~~~~~~~~~~----~~~~~~~~~d~~~~~s 627 (918)
++.++|++.++.++...+.+.-+.|.. .+.|.+.+.+-..- ..+...-+||+.+...
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 566789999888887777664333322 22333222221111 1344556888888777
Q ss_pred ceeeeeeecCCCCeEEEEEccCC-----------CEEEEEeCCCcEEEEECCCCceeeE---------------------
Q 002471 628 FKEANSVRASTSKVICCHFSSDG-----------KLLATGGHDKKAVLWHTDTLKSKTN--------------------- 675 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg-----------~~Latgs~Dg~V~iwd~~~~~~~~~--------------------- 675 (918)
......+-.|...|+.|.--|.. ..++|++.|++|++||++.+..-.+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 77888888999999998876611 2689999999999999874211100
Q ss_pred ----------------eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC--CCe
Q 002471 676 ----------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 737 (918)
Q Consensus 676 ----------------l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ 737 (918)
.......|.+|+.+|+|.+||+|..-|++||||+.+ -.....+..|...|.|+.|+.- +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 001345699999999999999999999999999987 5556777899999999999753 456
Q ss_pred EEEEEeCCCcEEEEEcCCC-eeeEEeec---CceEEEEecCC--CEEEEEEcCCeEEEEECCCceEEEEecC-----CCC
Q 002471 738 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTK 806 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~-~~~~~~~~---~~~~v~~sp~~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~~ 806 (918)
||++++.|..|.|||+... ..+.++.+ .++.+.|...+ ..+++++.|..|.+--.........+.. ...
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999998754 34445544 46778888877 5688888888776543332111111111 234
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 884 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~- 884 (918)
.+..++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.+.|++|.|||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999999666666666677788999999999999999999999999999999999
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+|...|+.+.|.+|.++|++++.||+|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8999999999999999999999999999999996
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.2e-26 Score=258.71 Aligned_cols=279 Identities=18% Similarity=0.264 Sum_probs=209.8
Q ss_pred CCCCCcccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccc---------cccCC------CcCceeeeeccCCCCC
Q 002471 551 SGTTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRL---------VEDGS------LDDNVESFLSHDDTDP 612 (918)
Q Consensus 551 ~~~~~k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~---------~~~gs------~d~~v~~~~~~~~~~~ 612 (918)
.-....+.+.||+||+|+++ |+.++||.+...+. ..++.. .+.+. ..+.+...........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 33456789999999999999 45568999987443 111110 00000 0011111111111111
Q ss_pred CCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC-C
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 691 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-d 691 (918)
.......-+....|.-+++..++||.+.|.+|.||.++ +|++++.|++||||++...+++++|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11112333344557778999999999999999999876 99999999999999999999999996 999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------- 763 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-------- 763 (918)
.+|+++||.||.||||++.. ..+..+..-..-|+++||.|+|...| .|+.+|.+++|+++..+....+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 88999999999999999985 34455555568899999999987555 89999999999998876554331
Q ss_pred --c-CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 764 --G-GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 764 --~-~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
+ .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 36667777654 4699999999999999999999998887543 34567899999999999999 999999843
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-26 Score=254.14 Aligned_cols=273 Identities=22% Similarity=0.379 Sum_probs=233.4
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEECCCCc------eeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC-c
Q 002471 643 CCHFS-SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-Y 714 (918)
Q Consensus 643 ~l~fs-pdg~~Latgs~Dg~V~iwd~~~~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-~ 714 (918)
.+..+ |.+++|+|||.||.|++|++.... ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33444 366789999999999999986322 467788999999999999999999999999999999998754 7
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe------------ecCceEEEEecCCCEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~------------~~~~~~v~~sp~~~~ll~ 780 (918)
+..++..|.+.|.||++......++++|+.|+.|++||++++. .+..+ +..+.+++..+.+..++.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 8889999999999999955557799999999999999999873 23222 224566777888878888
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
|+.++.|++||.++.+.+..+.+|...|+++..++||..+++++.| +|++||++.. +|+.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 9999999999999999999999999999999999999999999999 9999999765 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 860 TYPSLLVIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~-~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+-.++++|+.|+.|+.-|+++. ++..+...+.+|..+..+....-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999984 4446667777888888876555556777899999884
No 82
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-25 Score=232.06 Aligned_cols=257 Identities=21% Similarity=0.342 Sum_probs=217.1
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEE
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDV 686 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l 686 (918)
|+..|.|+. ..+....+.+|+++|.+++|.... ..|++++.|.++++|.++.++. +....+|...|-+|
T Consensus 124 Dg~~riWd~----~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 124 DGTSRIWDL----KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred CCeeEEEec----CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 444555654 446888999999999998886533 3599999999999999886543 33345999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCC------------------------CCceeEEeccCCCCeeEEEEcCCCCeEEEEE
Q 002471 687 RFSPSMPRLATSSFDKTVRVWDADN------------------------PGYSLRTFMGHSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg~V~Iwdl~~------------------------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sg 742 (918)
+..+++.++++|+.|.+|.||+..+ .+.++.++.+|..+|.++.|++ ...++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~ 277 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSV 277 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEee
Confidence 9999999999999999999999321 0234678889999999999998 3467799
Q ss_pred eCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCCC
Q 002471 743 DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 743 s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg 817 (918)
+.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ -....+.+|...|.++.|+|..
T Consensus 278 SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred cccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 9999999999999998887765 4678899999999999999999999999986 4567889999999999999976
Q ss_pred C-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 818 E-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 818 ~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
. .|++++.| ++++||+|+.. ..++.+..|..+|.++.|. ++..|++|+.|++|+|+...
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 6 78899999 99999999763 4788899999999999997 45679999999999998653
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=257.45 Aligned_cols=245 Identities=25% Similarity=0.454 Sum_probs=215.4
Q ss_pred cceeeee-eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 627 SFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 627 s~~~~~~-l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
....+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+...+.+|...|.|+...+ .++++|+.|.+|+
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVK 314 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEE
Confidence 4455555 999999999999998788999999999999999999999999999999999998754 4788899999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE-EecCC-CEEEEEEc
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRYLAAAA 783 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~-~~ll~~~~ 783 (918)
+|++.+ +.++.++.+|.++|.++.+. ..++++|+.|++|++||+.+++|++++.++...+. +..+. ..++.|+.
T Consensus 315 VW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 315 VWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSL 390 (537)
T ss_pred EEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeee
Confidence 999997 88899999999999999998 34677999999999999999999999998765433 24444 89999999
Q ss_pred CCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCC
Q 002471 784 ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPT 860 (918)
Q Consensus 784 dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~sp~ 860 (918)
|+.|++||+++. +++.++.+|..-|.++.+. +++|++++.| +|++||..++ .+++.+.. +...|..+++.
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG-- 463 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC--
Confidence 999999999999 9999999999999776654 7899999999 9999999877 77777777 56777777775
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...+++++.|+.+++||+++++..
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cceEEEEecCCeeEEEecccCchh
Confidence 567999999999999999999877
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=238.33 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=203.2
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
.+.|++++|-.||++||+|+..|.|+|||+.+...++.+.+|..+|..+.|+|. +..|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 346999999999999999999999999998777788889999999999999994 56788889999999999998 5556
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
..+.+|++.|.|.+|+|-.+++++||+.||+|++||++.. ..+..+. .++..+.+.|.+..++ .+..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia-sAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA-SAGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE-EcCCCeEEEEEec
Confidence 7889999999999999999999999999999999999987 5566665 3567788888866555 4556789999999
Q ss_pred Cc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 65 5555556699999999999999999999999 9999997554 66666654 78899999999999999999999
Q ss_pred eEEEEECCC
Q 002471 872 SLELWNMSE 880 (918)
Q Consensus 872 ~I~vwd~~~ 880 (918)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887765443
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=222.41 Aligned_cols=239 Identities=23% Similarity=0.398 Sum_probs=208.5
Q ss_pred eEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002471 674 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 674 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 752 (918)
+.+.+|...|.+|+|+.+|..|++|+.|++++||+++..... -....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 556789999999999999999999999999999999864221 1345689999999999999999999999999999999
Q ss_pred cCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE-EEEEeCCeEE
Q 002471 753 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL-LASVSEDSVR 829 (918)
Q Consensus 753 l~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~-Las~s~d~I~ 829 (918)
++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+ +++.+.++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999988765 456678999999999999999999999999988877654 4556788899877775 4455556888
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
|.... ..+.+..+..|.....||.|+|+|++|++|+.|-.+.+||+.+.-++ .+..++-+|+.|.|+.||++||+|
T Consensus 173 ILsyp---sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYP---SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecc---ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 88875 34788899999999999999999999999999999999999998877 677899999999999999999999
Q ss_pred ecCCcEEE
Q 002471 909 SHDKFVKL 916 (918)
Q Consensus 909 s~Dg~I~I 916 (918)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998865
No 86
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.5e-25 Score=257.69 Aligned_cols=250 Identities=23% Similarity=0.394 Sum_probs=215.1
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------------------CceeeEeccCCCCeEEEEECC
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 690 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~fsp 690 (918)
+.+.....|.+.|+|+.|++||++||+|++|+.|.||+... .+++..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 46677889999999999999999999999999999998652 347788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------
Q 002471 691 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 764 (918)
Q Consensus 691 dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------ 764 (918)
++.+||+++.|++|.||+..+. ..++++.+|...|..+.|.|-|. +|++-+.|++|+||++.+..+.+.+.+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999984 88999999999999999999977 566999999999999887666665543
Q ss_pred ---CceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002471 765 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 820 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-------------g~----~L 820 (918)
....+.|+|+|.+|++... ..++.|++-.+.+.-..|.+|..++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 2356789999999988754 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+|+.| +|.||.....+..-.++.+ ....|..+.|+|||-.|++++.||+|.++.+...+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 9999998665444444433 36789999999999999999999999999997754
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1e-24 Score=221.85 Aligned_cols=269 Identities=18% Similarity=0.256 Sum_probs=216.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
-.+.|.+|.|++.+..|++++.||++++||+........+ .|..+|.+++|.+ ...+++|+.||.|+.+|+.+. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3678999999999999999999999999999887555555 4899999999986 568999999999999999973 34
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 796 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~ 796 (918)
..+-.|...|.||.+++..+ .+++|+.|++|++||.+...+...+.......+.+..++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998755 45599999999999999877777776666667778888999999999999999999876
Q ss_pred EEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeccCC---------CceEEEEEeCCCCE
Q 002471 797 CRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 863 (918)
Q Consensus 797 ~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~~~~~---------~~i~~i~~sp~g~~ 863 (918)
.....+ ..+-.++||++.|++.-+++++-+ .|.+=.++.. ........|++|. .+|++++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 554322 234568999999988855666655 6655544433 1123334455553 36899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEec
Q 002471 864 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~ 910 (918)
|++|+.||.|.+||+...+.+ .+...+..|.+++|+.+|..||+++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998887 56667788999999999999999874
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=226.89 Aligned_cols=291 Identities=14% Similarity=0.238 Sum_probs=228.0
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..-.|++||...++ +.+++|+|++..--+.....+... +.. -.-..+++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~--------------~~q--------------a~hPvIRT 167 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG--------------DTQ--------------ARHPVIRT 167 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC--------------Ccc--------------cCCceEee
Confidence 35689999998887 445688877543221111111100 000 02346788
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
|-.|.+.|+++.|+|...+|++|+.|++|++||+......+.++ .....|.+|.|+|.|.+|++|..--++++||+++
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 89999999999999999999999999999999998654444443 3566899999999999999999999999999998
Q ss_pred CCceeEEe---ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEc
Q 002471 712 PGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 712 ~~~~~~~~---~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~ 783 (918)
..+.... ..|.+.|+++.+++.+. +.++++.||.|++||--+++|++++.. .+.+..|..+++++++.+.
T Consensus 248 -~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 248 -YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 4444332 36999999999999976 556999999999999999999998853 4566779999999999999
Q ss_pred CCeEEEEECCCceEEEEecCCC--C---CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 784 ENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~--~---~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
|..|++|++.+++++.++.+-. + --+...|+....|++.-.+. .++-||.++...... .-.+|.+.+..+.
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIV 403 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEE
Confidence 9999999999999999887642 1 12345688888888887766 799999998754322 2346789999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
-+|.+..|++|+.|..+++|--+
T Consensus 404 HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999643
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7e-24 Score=239.07 Aligned_cols=297 Identities=15% Similarity=0.253 Sum_probs=236.4
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATS 698 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasg 698 (918)
+.+++.-+-+.+.++.++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+|+..-+.|+.++|..||+. +++|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 444444466899999999999999999998889999999999999999999999999966799999999999985 5666
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---------------------
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--------------------- 757 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--------------------- 757 (918)
+..|.+.+||++...........|.+.|..+.|.+.. .++++++.|+.+++|=.+++.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 6679999999997433333333566666666666543 344455556555544221000
Q ss_pred --------------------------------------------------------------------------------
Q 002471 758 -------------------------------------------------------------------------------- 757 (918)
Q Consensus 758 -------------------------------------------------------------------------------- 757 (918)
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence
Q ss_pred -----------e-eEEe--------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEEEc
Q 002471 758 -----------C-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWD 814 (918)
Q Consensus 758 -----------~-~~~~--------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~~s 814 (918)
. ...+ ...+.+++.++.|+..+.|.+.|.|.+|++.+|-....+ ..|..+|+.++.+
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence 0 0000 012345677888888999999999999999999988888 4799999999999
Q ss_pred CCCCEEEEEeCC-eEEEEECCCCC--------------------------------------CcceEEEeccCCCceEEE
Q 002471 815 PSGELLASVSED-SVRVWTVGSGS--------------------------------------EGECVHELSCNGNKFHSC 855 (918)
Q Consensus 815 pdg~~Las~s~d-~I~iwdl~s~~--------------------------------------~~~~i~~~~~~~~~i~~i 855 (918)
.-++.+++++.+ .+++||+.... ..+.++.+.+|.+.|+.+
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 988888888888 89999987542 012234567789999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 917 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D-g~I~IW 917 (918)
+|+|||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999999999999888889999999999999999999988 669999
No 90
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=6.4e-24 Score=245.14 Aligned_cols=242 Identities=16% Similarity=0.258 Sum_probs=187.6
Q ss_pred eeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCe
Q 002471 633 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 703 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 703 (918)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999754 3567889999999999999975 69999999999
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----eEEEEecCCCEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 779 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~sp~~~~ll 779 (918)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+.++. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 677888899999999999999976 56699999999999999999888776542 3567888888888
Q ss_pred EEEc----CCeEEEEECCCce-EEEEecC-CCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEecc-CCC
Q 002471 780 AAAA----ENVVSILDAETQA-CRLSLQG-HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NGN 850 (918)
Q Consensus 780 ~~~~----dg~I~i~D~~t~~-~~~~l~~-h~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~~~~~~i~~~~~-~~~ 850 (918)
+++. |+.|++||+++.. ++..+.. +...+....|++++.+|++++. | .|++||+.++. .+..... ...
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCC
Confidence 7653 7899999998764 3333332 3345666789999998888773 5 99999998764 2322222 344
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
.+..++|.|... +-.......++|.+...
T Consensus 305 ~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 305 PHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCcceEeccccc--ccccceeeeEEEEecCC
Confidence 567778877532 11111223456655443
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-24 Score=239.64 Aligned_cols=293 Identities=19% Similarity=0.292 Sum_probs=236.8
Q ss_pred CCCCCCCCccccCCCCCCCCCCcccEEEEcCCCeeecc-CCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCC
Q 002471 534 PSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTS-PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDP 612 (918)
Q Consensus 534 ~~~~t~~~~~~~~~~~~~~~~~k~~~~fs~dg~~~~~~-~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~ 612 (918)
.-..+|.+.+.++.+.+.-. -.++.++..+.+.++. ..+.+|+..++.+
T Consensus 160 ~~~~~p~rvLDaP~l~dDfY--~nlldWss~n~laValg~~vylW~~~s~~v---------------------------- 209 (484)
T KOG0305|consen 160 KIPQTPYRVLDAPGLQDDFY--LNLLDWSSANVLAVALGQSVYLWSASSGSV---------------------------- 209 (484)
T ss_pred cccCChhhhccCCcccccHh--hhHhhcccCCeEEEEecceEEEEecCCCce----------------------------
Confidence 44566666776666554332 2366677666665553 3557787765542
Q ss_pred CCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCC
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS 691 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspd 691 (918)
..+..+ +.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-|++|.
T Consensus 210 ----------------~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-- 269 (484)
T KOG0305|consen 210 ----------------TELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-- 269 (484)
T ss_pred ----------------EEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--
Confidence 111111 267899999999999999999999999999999999999998 99999999998
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceE
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQ 768 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~ 768 (918)
+..+.+|+.|+.|.++|++.....+.++.+|...|..+.|++++. ++++|+.|+.|.|||.........+ .+.+..
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 678999999999999999986666666889999999999999976 5679999999999999666655555 456778
Q ss_pred EEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE-EeCC--eEEEEECCCCCCcceE
Q 002471 769 MRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS-VSED--SVRVWTVGSGSEGECV 842 (918)
Q Consensus 769 v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las-~s~d--~I~iwdl~s~~~~~~i 842 (918)
++|+|....+++.+. |+.|++||..+++.+..+. ....|.+|.|++..+-|++ .+.. .|.||++.+. +.+
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~ 424 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLV 424 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---cee
Confidence 899998876666443 8999999999999888765 4678999999998874444 4433 8999999774 788
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
..+.+|...|..++++|||..|++++.|.+++||++-..
T Consensus 425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 899999999999999999999999999999999998774
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=233.45 Aligned_cols=242 Identities=23% Similarity=0.419 Sum_probs=212.2
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
....+.+|.+..+.|+++.|.++++++++++.|+.+++|+++..+...+|.+|.+.|+++.|......+++|+.|.+|++
T Consensus 208 k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 208 KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence 35678889999999999999999999999999999999999999999999999999999999988777999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcC
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 784 (918)
||+.. ..|.+++. ....+.+|+.. ...+++|-.|++|++||+++..++.... +.+.++..+.++..+++++.|
T Consensus 288 WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 288 WDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 99997 77777665 34557777776 3356699999999999999999988776 467889999999999999999
Q ss_pred CeEEEEECCCceEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC--ceEEEEE
Q 002471 785 NVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVF 857 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h----~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~--~i~~i~~ 857 (918)
+++.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+..... .|++++|
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEE
Confidence 99999999999888877642 2348889999999999999999 9999999887 55555554444 5999999
Q ss_pred eCCCCEEEEEEcCCeEEEE
Q 002471 858 HPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vw 876 (918)
+|.|..+++++.++.+.+|
T Consensus 440 ~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCchhhcccCCcceEec
Confidence 9999999999999999999
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-24 Score=239.10 Aligned_cols=274 Identities=18% Similarity=0.309 Sum_probs=228.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEeccCCCCeEE-EEECC-CCCEEEEEeCCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 702 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 702 (918)
.++.-+++++|...|..|++.+.. .++++|.||+++||+-..... ...+.+|.+.|.+ ++|.+ ++-+|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356678899999999999877654 899999999999999754333 3557788888888 88886 555799999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 779 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll 779 (918)
+|.+|.+.. ..++.++++|...|+|+....++. +++|+.|.++++|-+. ++...+.++ +-.+...|++ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999987 789999999999999999876654 5599999999999864 455555554 4456667775 999
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+|+.|.+|++|.. ++++.+|.+|.+.|+.+++-+++. |++|+.| .|++|++ ++ .++.++.+|.+.++++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999987 788899999999999999998655 5566666 9999999 33 7899999999999999988
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~-~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.++..|+++++|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5554445554 899999988886 6678889999998
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-24 Score=217.77 Aligned_cols=283 Identities=20% Similarity=0.282 Sum_probs=213.3
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee--eEec--cCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATSS-FDKTVR 705 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~--~~l~--~h~~~V~~l~fspdg~~Lasgs-~Dg~V~ 705 (918)
+..|++|.+.|+|++|+.||++|||++.|++|+||++++.... +.++ ..-+.-+.++|.||-+-+++.. ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999864321 1111 1223568899999987665554 466799
Q ss_pred EEeCCCC--C-cee--------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEE
Q 002471 706 VWDADNP--G-YSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 771 (918)
Q Consensus 706 Iwdl~~~--~-~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~ 771 (918)
+|.+... + ... ..-+.|.-.|..+-... +..+|++|+.|..|.+|+++ |..+..+.. .....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9977531 1 111 11223555666665554 45577799999999999999 777776654 3456789
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---Cc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002471 772 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 838 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~----~~ 838 (918)
+|+|.++++++..-.|++|++- .| ..++.+++|...|..++|+++.+.+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999753 22 3567789999999999999999999999999 9999998532 22
Q ss_pred cceEEEe----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 839 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 839 ~~~i~~~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
.+.+++. ...+..-..+..+|.|..|++.. ...|++|..++++.. ....|...|.+|+|+++|+++++++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2333332 12233445889999999766654 458999999998877 3457999999999999999999987 66
Q ss_pred cEEEe
Q 002471 913 FVKLW 917 (918)
Q Consensus 913 ~I~IW 917 (918)
.++|+
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 77765
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=228.30 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=220.3
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee----E-------------e-ccCCCCeEEEEECCCC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 692 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~----~-------------l-~~h~~~V~~l~fspdg 692 (918)
+..+..|.-+|+||++++|++++++++.|++|.-|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999988766331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEE
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 769 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v 769 (918)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....++ +++.|+.|++|++.....+.++.++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 778889999999999999987655554 9999999999999988777776654 4445
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec--
Q 002471 770 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 846 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-- 846 (918)
........+-+++.|+++++|++. .+....+.++.+.+.|++|-. ...|++|+++ .|.+|++-+.+. ++...
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkp---lf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKP---LFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCc---eeEeecc
Confidence 555555566666789999999994 344556778899999999986 4567788888 999999976532 22211
Q ss_pred ----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 847 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 847 ----------~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~----~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
.+..+|++++..|....+++|+.+|+|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112378999999999999999999999999998882 23333477899999999999966655
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=9.4e-25 Score=232.79 Aligned_cols=276 Identities=18% Similarity=0.297 Sum_probs=233.0
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEec--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
-.|..-|.++.+|...++++||+ .|.|+|||+.. ...+..+. .....|+++.+.|||+.|++|++-.+|.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36888999999999999999997 57899999873 23334443 24567999999999999999999999999999
Q ss_pred CCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCC
Q 002471 710 DNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 710 ~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg 785 (918)
..+...++. +..-.-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..|+.++++|.+|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 875544432 333335678899999966 555888899999999999999999986 468899999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
+|+.||+++++.+.... ....|.++.++|.+.+|++|-++ .|.|...... ..+.+..|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987665432 45789999999999999999988 7877776543 345566778999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++.+.|+.+..|...-|..+.-......|.++.++.|++||+||+.|+...||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999888777788999999999999999999999888776
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.6e-23 Score=198.95 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=208.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCCCCeEEEEECCC----CCEEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSS 699 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs 699 (918)
...+.-+.|.+.|+|++|+|+|.+||+|+.|++|++.-+.... ....|.-|.+.|.+++|-.+ +.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 3445567899999999999999999999999999998665322 23457789999999999753 55777776
Q ss_pred C-CCeEEEEeCCCCCceeEEeccCCCCeeEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----------Cce
Q 002471 700 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTA 767 (918)
Q Consensus 700 ~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----------~~~ 767 (918)
. |..|++-|... +..+..+.+|.+.|.++. |+ +.+|++|+.|.+|++||++-..|+.++.. .+.
T Consensus 160 agdc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 160 AGDCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CCcceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence 5 77888888887 778899999999998874 33 56888999999999999999999887642 346
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEe
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHEL 845 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~ 845 (918)
.+++.|.+..++++-.|....+||++.++.+..+..|...|+|+.|+|...|+++++.| .|++-|+... .....+...
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 68899999999999999999999999999999999999999999999999999999999 9999998643 122345556
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..|..++..|.|+|..-.|++.+.|+++.+|-+.
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6788899999999999999999999999999764
No 98
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9e-24 Score=214.52 Aligned_cols=275 Identities=20% Similarity=0.304 Sum_probs=222.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeEEe-----ecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 721 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 721 ~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
...+|+...|+|...+.++++-.+..-.+.++...+ ++..- .....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 788999999999877777666666556666655432 22111 1112334588999999999999999999999
Q ss_pred CceEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC------CcceEEEec--cCCCceEEEEEeCCCCE
Q 002471 794 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELS--CNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 794 t~~~~~~l~~h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~------~~~~i~~~~--~~~~~i~~i~~sp~g~~ 863 (918)
+.+++..++-.. ..|..|.|+-.|++|+.-+.| .||.|+++.-. +.+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999988766 789999999999999999999 99999986321 111112111 11334568899999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~d-g~I~vwd~~~~~~~-~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++++.. ..++||....|.++ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9888754 48999999999988 566666 578899999998888877 788999993
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.5e-22 Score=221.52 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999998888876544 7789999999977 5667789999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCC
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~ 805 (918)
++|+|+++.++++++.|+.|++||+++.+.+..+.. ....+.|+|++..++++..++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999887877777899999999999888777753 356789999999998888765 577889998877665432 3
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 002471 806 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 875 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~sp~g~~l~s~-s~dg~I~v 875 (918)
..+.+++|++++.+|++++ .+ .|++||+++++ ++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3567899999999776554 45 99999998773 33322211 1123468899999986664 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 002471 876 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 918 (918)
Q Consensus 876 wd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg-s~Dg~I~IWd 918 (918)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554566689999999999999886 4689999997
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=3.9e-24 Score=235.98 Aligned_cols=246 Identities=24% Similarity=0.337 Sum_probs=213.2
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~V~Iwdl 709 (918)
..-+....|+|++.||+|.+||+|..-|+++||++...+....++.|...|.|+.|+. ..++||+++.|..|.|||+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 3345566799999999999999999999999999999999999999999999999987 3578999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--------ecCceEEEEecCCCEEEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--------~~~~~~v~~sp~~~~ll~ 780 (918)
.....++.++.+|...|++|.|.-.| +.-+++|+.|..|.+--.........| +.....+.+.|..+++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 98777889999999999999998765 334459999988865443322111122 233466889999999999
Q ss_pred EEcCCeEEEEECCCceEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 781 AAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++.|..|+|||+.+++.++.|++ |++....+..+|.|.||++.+.| ++.+||+.++ +|+..+.+|...|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeee
Confidence 99999999999999999999986 66778889999999999999999 9999999888 89999999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
|.+|.+.|++.+.||+|.||.+...
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ecccchhheeecCCceEEEEECchh
Confidence 9999999999999999999998653
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-22 Score=208.54 Aligned_cols=246 Identities=20% Similarity=0.341 Sum_probs=205.1
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe-CCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I 748 (918)
.+..+.+......|++|.|+.+|.+|++++.|.+|+|||..+ +..++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 445566666788999999999999999999999999999998 7888888888888999999877666664332 38899
Q ss_pred EEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 749 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 749 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
|+.++.+.+.++.|.++ +..++.+|.+..+++++.|++|++||++..++...+.....+ .++|+|.|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999886 467889999999999999999999999988887766543333 4689999999999998
Q ss_pred C-eEEEEECCCCCCcc-eEEEec-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC---eEEEEE
Q 002471 826 D-SVRVWTVGSGSEGE-CVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALAV 898 (918)
Q Consensus 826 d-~I~iwdl~s~~~~~-~i~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~---V~~la~ 898 (918)
. .|++||+++..... ....+. ........+.|+|+|++|+.+...+.+++.|.-+|.+. .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 99999999864322 222222 44677899999999999999999999999999999977 55554432 267789
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 002471 899 STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg~I~IWd 918 (918)
+||+++|++|+.||+|++|+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
No 102
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=235.58 Aligned_cols=228 Identities=16% Similarity=0.225 Sum_probs=175.8
Q ss_pred eeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECCCCCE-EEEE
Q 002471 629 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LATS 698 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 698 (918)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467789999999999999996 7899999999999999997532 34567899999999999998876 5789
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---E-E----E
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-M----R 770 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~-v----~ 770 (918)
+.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.++.. . . .
T Consensus 145 S~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999997 44455554 667899999999977 556888899999999999998888776432 1 1 2
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-ceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 002471 771 FQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 842 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg----~I~i~D~~t-~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i 842 (918)
|+++++++++++.++ .|+|||++. .+++..+.. +...+......+++.++++|+.| .|++|++..+. ...+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 347888999988764 799999995 455554432 23333334344568889999888 99999997652 2333
Q ss_pred EEeccCCCceEEEEEeCCC
Q 002471 843 HELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g 861 (918)
..+. +..++.+++|.|..
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cccc-cCCCccceEEcccc
Confidence 3333 45677888998864
No 103
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=8.9e-24 Score=225.23 Aligned_cols=247 Identities=18% Similarity=0.370 Sum_probs=204.1
Q ss_pred eeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC----------ceeeEeccCCCCeEEEEECCC-CCEEEEEeC
Q 002471 633 SVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPS-MPRLATSSF 700 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~----------~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~ 700 (918)
..-.|.+.|+.+.+-|. ..++|+++..+.|.|||..+. .+..++.+|.+.-+.|+|++. .-+|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 33469999999999994 467888889999999997632 222378899998899999995 347999999
Q ss_pred CCeEEEEeCCCCCc------eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecC
Q 002471 701 DKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~ 774 (918)
|++|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||+|++.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------------- 261 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------------- 261 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------------
Confidence 99999999975433 3567889999999999999999999999999999999998631
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
.++.....+|...|.|++|+|-+ .+||+|+.| +|++||+|+.. .+++.+.+|...|
T Consensus 262 --------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev 319 (422)
T KOG0264|consen 262 --------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEV 319 (422)
T ss_pred --------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcce
Confidence 12223346799999999999954 588999988 99999999765 5899999999999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------cE-EEEcccCCCeEEEEEeCCCCE-EEEEecCCcEE
Q 002471 853 HSCVFHPTY-PSLLVIGCYQSLELWNMSEN--------------KT-MTLTAHEGLIAALAVSTETGY-VASASHDKFVK 915 (918)
Q Consensus 853 ~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~--------------~~-~~~~~h~~~V~~la~spdg~~-Lasgs~Dg~I~ 915 (918)
.++.|+|.. ..|++++.|+.+.|||+..- ++ +.-.+|...|..+.|+|+..+ |+|+++|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999976 56778889999999998641 11 255689999999999998875 77899999999
Q ss_pred EeC
Q 002471 916 LWK 918 (918)
Q Consensus 916 IWd 918 (918)
||+
T Consensus 400 IW~ 402 (422)
T KOG0264|consen 400 IWQ 402 (422)
T ss_pred Eee
Confidence 996
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-23 Score=205.76 Aligned_cols=231 Identities=21% Similarity=0.297 Sum_probs=207.3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 675 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 675 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
.+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+ ++.+.++.+|.+.|+|++..-+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999998876 788999999999999999998877655 99999999999999
Q ss_pred CCeeeEEeec--CceEEEEecCCCEEEEEEc-----CCeEEEEECC-------CceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 755 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-----ENVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 755 ~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-----dg~I~i~D~~-------t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
+|+++..++. .+..+.|+.+++.++++.. .+.|.++|++ ..++...+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988875 5677899999998888765 4689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 899 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~s 899 (918)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEe
Q 002471 900 TETGYVASAS 909 (918)
Q Consensus 900 pdg~~Lasgs 909 (918)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9887777665
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.1e-23 Score=231.34 Aligned_cols=251 Identities=20% Similarity=0.347 Sum_probs=214.5
Q ss_pred CCCCcccccccCccceeeeeeecCCCCeEE-EEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCC
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~-l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspd 691 (918)
|...+.|+.... .+.+...+.+|.+.|.+ ++|-+ ++-+|++|+.|++|.+|......++.++++|...|+|++...+
T Consensus 34 d~t~~vw~~~~~-~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~ 112 (745)
T KOG0301|consen 34 DGTVKVWAKKGK-QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED 112 (745)
T ss_pred CCceeeeeccCc-ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc
Confidence 333444443322 55666778899999988 88885 5567999999999999999999999999999999999998888
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE-
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR- 770 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~- 770 (918)
+. |++||.|.+++||... .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.++..+++
T Consensus 113 ~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRg 184 (745)
T KOG0301|consen 113 GT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRG 184 (745)
T ss_pred Cc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchhheee
Confidence 76 9999999999999874 4666799999999999999986 4559999999999986 788899998876654
Q ss_pred -EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 771 -FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 771 -~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
..-++..|++++.||.|++|++ +++++.++.+|...|.++....++..++++++| +++||+.. .|...+...
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lP 258 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLP 258 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecC
Confidence 2234468999999999999999 899999999999999999988889999999999 99999975 677777777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
...|+++.+-++|. |++|++||.|+||....
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 77899999988887 89999999999998764
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=219.93 Aligned_cols=282 Identities=18% Similarity=0.270 Sum_probs=234.8
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~ 712 (918)
...+.|+||.|+|...+|++|+.||+++||.++ ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 346789999999999999999999999999887 4456677777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEE
Q 002471 713 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 713 ~~-~~~~~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.. .+....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 32 123333443 3567788899977 55688899999999999999887765 6678899999999999999999999
Q ss_pred EEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 789 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+||++...+++.+....+ .-+++|.+.++.|||+|++. -|.|||..+. ...+++..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34677888999999999998 8999997643 445677777777888999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEEE-E---cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCY--QSLELWNMSENKTMT-L---TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~d--g~I~vwd~~~~~~~~-~---~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|+.++.. +.+++-.+.+..+.. + ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 9888764 589999998887772 2 23446799999999999999999999999996
No 107
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.1e-23 Score=208.31 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=199.6
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEe
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwd 708 (918)
.+|.+-|.|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..||++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999964 4567777889999999999976 488999999999999997
Q ss_pred CCCC--------CceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEE
Q 002471 709 ADNP--------GYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 709 l~~~--------~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 779 (918)
-... -....++......|++|+|.|.. +..+++++.||+||||+.-.--.+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~------------------ 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ------------------ 151 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc------------------
Confidence 6321 12345666788899999999963 34577999999999998754322211
Q ss_pred EEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEecc
Q 002471 780 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 847 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spd---g~~Las~s~d------~I~iwdl~s~~-~~~~i~~~~~ 847 (918)
|.+... ..+.....+..+..|+.|++. ..+|++|+++ .++||...... +...+.++..
T Consensus 152 ----------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 152 ----------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 111100 000011235667889999974 3489999887 79999887654 6677888889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 002471 848 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 848 ~~~~i~~i~~sp~----g~~l~s~s~dg~I~vwd~~~~~--------------------~~-~~~~h~~~V~~la~spdg 902 (918)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999996 35688999999 9999987411 12 466899999999999999
Q ss_pred CEEEEEecCCcEEEeC
Q 002471 903 GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IWd 918 (918)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=207.32 Aligned_cols=245 Identities=22% Similarity=0.306 Sum_probs=200.9
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl 709 (918)
..|.+.|.++...-.|++|||++.|++|+||.++.. +.+.+|.+|.++|..++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 479999999999999999999999999999998743 67889999999999999976 7999999999999999998
Q ss_pred CCCC-ceeEEeccCCCCeeEEEEcCCCC-eEEEEEeCCCcEEEEEcCCC------eeeEEeecCceEEEEecC---C---
Q 002471 710 DNPG-YSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 775 (918)
Q Consensus 710 ~~~~-~~~~~~~~h~~~V~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~sp~---~--- 775 (918)
.++. .....+..|...|++|+|.|.+- .+|++++.||.|.|.+++.. +.......++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8742 12345668999999999999743 45678889999999998765 222334457788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 002471 776 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 776 --------~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg----~~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
.+|++++.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++++.| +|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998876 3445588999999999999954 389999999 99999987432322
Q ss_pred eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 841 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
....+......+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 333344446779999999999999999999999999654
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=221.27 Aligned_cols=359 Identities=16% Similarity=0.242 Sum_probs=248.0
Q ss_pred CCCcccEEEEcCCCeeeccCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCC---CCCCCCCcccccccC-cc-
Q 002471 553 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDT---DPRDAGGRGMDVSQG-FS- 627 (918)
Q Consensus 553 ~~~k~~~~fs~dg~~~~~~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~---~~~~~~~~~~d~~~~-~s- 627 (918)
...+.+.+...+.+++++...+.|+-.+.|+...+.... ...++...+...+. ...+....+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~-----~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLL-----HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecc-----ccceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 344556667777777776555555444444332221111 11222222221111 112223334444332 01
Q ss_pred ceeeeeeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
......++.-.+.|+++ ++|.. +.|+.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..+|.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 11122233333337776 45543 6789999999999999999999999999999999999999888999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~ 781 (918)
|++++. ++.+..|+..-+.|++++|..||..++++++..|.+.+||++..+...... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 778888885569999999999999999999999999999999887665543 334445555555555555
Q ss_pred EcCCeEEEE--EC-------------------------------------------------------------------
Q 002471 782 AAENVVSIL--DA------------------------------------------------------------------- 792 (918)
Q Consensus 782 ~~dg~I~i~--D~------------------------------------------------------------------- 792 (918)
+.|+.+++| |.
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 555544443 31
Q ss_pred -------------------------------------------CCceE-EEEec-----CCCCCeEEEEEcCCCCEEEEE
Q 002471 793 -------------------------------------------ETQAC-RLSLQ-----GHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 793 -------------------------------------------~t~~~-~~~l~-----~h~~~V~si~~spdg~~Las~ 823 (918)
++... .+.+. .....+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 11000 00000 011356788888889988888
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------------------
Q 002471 824 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------ 884 (918)
Q Consensus 824 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------------------ 884 (918)
+.. .|.+|++.+|-.......-..|..+|+.++....++.+++++.+|.+++||..++..+
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 776 9999999887333333233578899999999999999999999999999998765310
Q ss_pred ------------------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 ------------------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ------------------------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+|.+.|++++|+|||++|++++.|++||+||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2345999999999999999999999999999998
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.6e-22 Score=204.89 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=188.9
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 709 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl 709 (918)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 345579999999999999999999999999999999998 5778888999999999988665 8999999999999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----EEeecCceEEEEecCCCEEEEEEcC
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
+. ..++.++. -.+.|+++..-. .+++.+..+..|.+|+++++... ..++--+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55666555 456788877653 36677888999999999876432 2234467889988898888999999
Q ss_pred CeEEEEECCCc--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 g~I~i~D~~t~--~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
|.+.|..+..+ +.-++|+.|+. .|++|+|+|....|++++.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988776 66667777763 47889999988888887777 9999998654 5566777789999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 002471 853 HSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~ 869 (918)
+++.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998877654
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.5e-24 Score=232.25 Aligned_cols=285 Identities=15% Similarity=0.246 Sum_probs=233.7
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEEE-CCCCCEEEEEeCCCeEEE
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRF-SPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~f-spdg~~Lasgs~Dg~V~I 706 (918)
...+++.|.+.|++++...+++.|++++.|-+|++|+.... -++.++..|.+.|.||++ .++...+|+|+.|+.|.|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 46788999999999999999999999999999999998866 688899999999999999 788889999999999999
Q ss_pred EeCCCCCc---------eeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEec
Q 002471 707 WDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP 773 (918)
Q Consensus 707 wdl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp 773 (918)
||++++.. ....+. ++...|++++.++.+ .+|++|+..+.|++||.++.+.+..+.++ +..+..+.
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99996422 122233 888999999999986 57789999999999999999988888775 46677899
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+|..++++++||+|++||+...+|+.++..|...|.++..+|+-..+++|+.| .|..-|+++......+.+ ...+|
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv 300 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPV 300 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCch
Confidence 99999999999999999999999999999999999999999999999999999 999999988633222222 25567
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-------------------------EcccCCCeEEEEEeCCCCEEEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-------------------------LTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-------------------------~~~h~~~V~~la~spdg~~Las 907 (918)
..+..+....-+.+++.|+.|+-|...-.-.+. .......|...++-.|.++++|
T Consensus 301 ~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 301 LKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred hhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEee
Confidence 777777655556888889999988654321110 0011123344455567889999
Q ss_pred EecCCcEEEeC
Q 002471 908 ASHDKFVKLWK 918 (918)
Q Consensus 908 gs~Dg~I~IWd 918 (918)
-..+|.+.+||
T Consensus 381 kDa~gnv~lwD 391 (735)
T KOG0308|consen 381 KDAKGNVALWD 391 (735)
T ss_pred ecCCCCEEEEE
Confidence 99999999997
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.4e-23 Score=223.52 Aligned_cols=289 Identities=20% Similarity=0.253 Sum_probs=231.3
Q ss_pred cCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEEEeCC
Q 002471 624 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFD 701 (918)
Q Consensus 624 ~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~D 701 (918)
..|.-.+...+++|++.|+||...+.|.+||+|+.||+|+||.+.+++|++++.. .+.|.||+|+|.+. .||++- +
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~ 463 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-G 463 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-c
Confidence 3466778888999999999999999999999999999999999999999999874 45899999999765 344433 2
Q ss_pred CeEEEEeC---------------------------------CC---CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-
Q 002471 702 KTVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG- 744 (918)
Q Consensus 702 g~V~Iwdl---------------------------------~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~- 744 (918)
..+.|-+. .. ...-++....|...|..|.|+..|++|..++..
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 22333322 10 011134445688999999999999877655543
Q ss_pred -CCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 745 -DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 745 -Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
...|.|+++...+....| ++.+.++.|+|...++++++ ...|+|||+...+.+..+......|.+++.+|.|.-|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 356889999876655444 56788899999988777655 5789999999988888887778899999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCCc-EE---EEccc
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM------SENK-TM---TLTAH 889 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~------~~~~-~~---~~~~h 889 (918)
+.++.| .++.||+.-.. +....+..|...++.++||+....|++|+.|+++.||.- ..+. ++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 999999 99999997543 566778889999999999999999999999999988842 2222 22 56788
Q ss_pred CCC----eEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 890 EGL----IAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 890 ~~~----V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
... |..+.|+|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 765 9999999999999999999999999
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=205.35 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=200.1
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEE-cCCCCeEEEEEeCCCcEEEEEc
Q 002471 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 677 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~sgs~Dg~I~iwdl 753 (918)
..|.+.|.++...--|++|||++.|++|+||.+++.+ ..+.++.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889988888889999999999999999999866 578899999999999999 5665679999999999999999
Q ss_pred CCCeeeEE-----eecCceEEEEecCC--CEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCC---C---
Q 002471 754 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 817 (918)
Q Consensus 754 ~~~~~~~~-----~~~~~~~v~~sp~~--~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spd---g--- 817 (918)
.+++-.+. +...+++++|-|.+ -.|++++.||.|.|++.+.. ........|+-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88854332 34567888888765 46777888999999987754 334445679999999999995 4
Q ss_pred --------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 002471 818 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 881 (918)
Q Consensus 818 --------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg~I~vwd~~~~--- 881 (918)
+.|++|+.| .|+||+..++ .......+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 445556689999999999999964 57999999999999977632
Q ss_pred -cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 -~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+...+......++.+.|+..|.+|+.++.|..|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1123455678899999999999999999999999996
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=213.49 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
+-..+..++||...|+++.|+++...+++++.|..|+||.+....+...+..|..+|+.+..+|.|+||++++.||+..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 44567789999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE
Q 002471 707 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 707 wdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 781 (918)
.|+++ +..+..... ..-.++++.|+||| .+|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 444443332 33458999999996 4777999999999999999998888875 46778999998899999
Q ss_pred EcCCeEEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 782 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|++++.+ .|++++-.+ +.+.++..+..|.+..+++.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877776542 3479999999999999999888 788887554 35678888888888999999999
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002471 860 TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~ 878 (918)
...++++++.|..++|+.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999888864
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.5e-22 Score=213.78 Aligned_cols=230 Identities=23% Similarity=0.376 Sum_probs=195.1
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
++|...|.|++.|+||+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 48999999999999999999999999999999999999999999999999999999888999999999999999987 66
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+.++.+|.+.|.+|..... ..++.+|+.|+++++|++..... -.|. +.+.|++|.. ...|++|+.+|.|.+|+
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence 78889999999999998765 45676788999999999954432 2333 2445666654 47899999999999999
Q ss_pred CCCceEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeccCCCceEEEEE
Q 002471 792 AETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 792 ~~t~~~~~~l~~-h-----------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~~~~~~~i~~i~~ 857 (918)
+-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+ .....+..+. -.+.|++++|
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 999998887542 2 2389999999999999999988 9999999876 2345555555 4678999999
Q ss_pred eCCCCEEEEEEc
Q 002471 858 HPTYPSLLVIGC 869 (918)
Q Consensus 858 sp~g~~l~s~s~ 869 (918)
+++|++|++|..
T Consensus 434 ~~sgk~ivagiG 445 (479)
T KOG0299|consen 434 SNSGKRIVAGIG 445 (479)
T ss_pred ccCCCEEEEecc
Confidence 999998777754
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.9e-22 Score=199.08 Aligned_cols=281 Identities=22% Similarity=0.349 Sum_probs=219.9
Q ss_pred eeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCc----------eeeE-----eccCCCCeEEEEECC-CCCEE
Q 002471 633 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSP-SMPRL 695 (918)
Q Consensus 633 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~----------~~~~-----l~~h~~~V~~l~fsp-dg~~L 695 (918)
..+.|.+.|+++...+ .|+|+++|+.||.|.|||++... .+.. -.+|.-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457899999999998 78999999999999999987432 1111 136888999999999 56688
Q ss_pred EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEE
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 770 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 770 (918)
.+++.|.+++|||..+ -.....|+ .++.|++-+++|- ...||++|..|-.|++.|+.+|.+.+++.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8899999999999998 44455555 6678888888885 346888999999999999999999998876 567899
Q ss_pred EecCCCEEEE-EEcCCeEEEEECCCc-eEEEEe--------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 771 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSL--------------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 771 ~sp~~~~ll~-~~~dg~I~i~D~~t~-~~~~~l--------------~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
|+|...++++ ++.||.|++||++.. .|...+ ..|.+.|..++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999988665 566999999999865 333333 2466789999999999999999888 9999999
Q ss_pred CCCCCcceEEEeccCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002471 834 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 834 ~s~~~~~~i~~~~~~~~----~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasg 908 (918)
.+|+.......-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 98854322211111111 111 22 334455555666789999999999888 677899999999999998899999
Q ss_pred ecCCcEEEe
Q 002471 909 SHDKFVKLW 917 (918)
Q Consensus 909 s~Dg~I~IW 917 (918)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.7e-24 Score=237.83 Aligned_cols=236 Identities=27% Similarity=0.476 Sum_probs=211.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
..+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.||.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667999999999988889999999999999999998888888999999999999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.+.++++.+|...+.++.|+|.+.+ +++|+.|+.+++||++...|.+.
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~------------------------------ 149 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHT------------------------------ 149 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceee------------------------------
Confidence 7889999999999999999999764 47899999999999876554443
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
+.+|...|.++.|+|+|++++++++| +++|||+..+ +.+.+|+.|.+.+..+.|+|..-.++.|+.|
T Consensus 150 ---------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 150 ---------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred ---------ecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCC
Confidence 44577889999999999999999998 9999999776 7888999999999999999999999999999
Q ss_pred CeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 871 QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 871 g~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
++|+|||+++.+.+ ........|.+++|++++..+++|..+
T Consensus 218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999998888 555667899999999999988887654
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.8e-23 Score=212.94 Aligned_cols=246 Identities=17% Similarity=0.259 Sum_probs=207.6
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
-++..++++|.+.|..|++.. ..+++++.|++|+.|.++. ..++++.+ ...+..|.-+..+..++||+.+ |.||
T Consensus 99 R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IW 172 (433)
T KOG0268|consen 99 RECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIW 172 (433)
T ss_pred hhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeec
Confidence 357788999999999999987 6888999999999999875 35566553 4457778877778889998865 9999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
|... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+..++.. .-....++|+|..-.|+++..|.
T Consensus 173 D~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 173 DEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 9986 67888888888899999999999999999999999999999999887754 45678899999777888888999
Q ss_pred eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.++.||++.. .++....+|.+.|.++.|+|.|.-|++|+.| +|+||.++.+......++- .-..|.|+.|+.|..+
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKY 329 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccE
Confidence 9999999975 6777888999999999999999999999999 9999999876433222221 1345899999999999
Q ss_pred EEEEEcCCeEEEEECCCCc
Q 002471 864 LLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~ 882 (918)
+++|+.|+.|++|...-.+
T Consensus 330 i~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEecCCCcceeeeecchhh
Confidence 9999999999999876543
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=215.76 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=190.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE------------eccCCCCeEEEEECCCC-CEEEEEeCCCeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSM-PRLATSSFDKTV 704 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~------------l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V 704 (918)
...|+++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+. ..++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 44799999999999999888888999999765444433 34799999999999965 478999999999
Q ss_pred EEEeCCCCCceeEEec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe------ec--CceEEEE
Q 002471 705 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG--GTAQMRF 771 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~------~~--~~~~v~~ 771 (918)
||||+++......+++ +..-.++.++|++++.. |++|+.||.|.+|+.........+ .. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998665555554 34457899999999875 779999999999998654322211 12 6789999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeC-------CeEEEEECCCCCCcce
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 841 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h--~~~V~si~~spdg~~Las~s~-------d~I~iwdl~s~~~~~~ 841 (918)
+.++++|++-+.|+++++||++.. +++.+..+- ..+-+.++|+|+.++|++|.. +++.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999976 555555543 345678999999999999863 16999998766 66
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
+..+......|..|.|||.-+-|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999887
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.9e-20 Score=204.95 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=194.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 706 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~I 706 (918)
+.+..+..|. .+.+++|+++++++ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.|+++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 47789999999876 5667889999999999888777765544 5788999999987665 55899999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEE-
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 782 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~- 782 (918)
||+.+ ...+..+. +...+.+++|+|++..++ +++.+ ..+.+||.++++....+. .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 45555554 234578899999987665 55544 467788999887765442 3456688999998887665
Q ss_pred cCCeEEEEECCCceEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 783 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
.++.|++||+++++.+..+..+. . ....++|+|++++++++ +.+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 58999999999998776654221 1 23468899999975543 334 8999999876 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002471 854 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 900 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp 900 (918)
+++|+|++.+|+++. .++.|++||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874334456668888764
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=227.48 Aligned_cols=273 Identities=20% Similarity=0.371 Sum_probs=214.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCC----CceeeEecc---CCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~----~~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.+.+|...++-.-|+.++.. .++||.+.. .++...++. -...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45667777888888888754 678887652 222222221 122456778875 567899999999999999986
Q ss_pred --CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCC-EEEEEEcCC
Q 002471 712 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAEN 785 (918)
Q Consensus 712 --~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~ll~~~~dg 785 (918)
..+.+..|..|+..|.+++|++...++|++|+.||+|++||++..+...++.+ .+..|.|+|... +|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34556688999999999999999999999999999999999999888877765 456788998765 455566678
Q ss_pred eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 786 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 786 ~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+. ...++.++.|-|+..+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999976 6777888999999999999999999999999 999999986533 2333332 2678999999999877
Q ss_pred EEEEE---cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEE
Q 002471 864 LLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 915 (918)
Q Consensus 864 l~s~s---~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~sp-dg~~Lasgs~Dg~I~ 915 (918)
.++.+ .|-.|+|||++..-+- ++..|...|+.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55544 3559999999876544 7889999999999965 455788999999864
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.8e-22 Score=220.40 Aligned_cols=273 Identities=23% Similarity=0.318 Sum_probs=208.4
Q ss_pred EEEcc---CCCEEEEEeCCCcEEEEECCCCce------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 644 CHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 644 l~fsp---dg~~Latgs~Dg~V~iwd~~~~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
+.|++ ...+||.+.+||.|.++|...... ++.+..|...|.++.|.|....|++++.|.++++||+.. ..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-ce
Confidence 56665 346899999999999999874332 245567999999999999777899999999999999997 55
Q ss_pred eeEE--eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee--------------------EEe-------e--
Q 002471 715 SLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--------------------RVF-------K-- 763 (918)
Q Consensus 715 ~~~~--~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~--------------------~~~-------~-- 763 (918)
++.. +.+|.+.|.++||.+.+..+||+|+.||.|.|||++..... ... +
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 5554 88999999999999999999999999999999999754300 000 0
Q ss_pred -cCce---EEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC-
Q 002471 764 -GGTA---QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED- 826 (918)
Q Consensus 764 -~~~~---~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~si~~spdg~~Las~s~d- 826 (918)
..+. .+.+.-|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 0111 2556677788888777 999999999986554432 122 2357788888888876666666
Q ss_pred eEEEEECCCCCCcceEEEeccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCC
Q 002471 827 SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 827 ~I~iwdl~s~~~~~~i~~~~~~~~~--i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg 902 (918)
.|++|++.+... ..+..+.++... ...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987532 333333333222 223357899999999999999999999887654 788999999999998743
Q ss_pred -CEEEEEecCCcEEEeC
Q 002471 903 -GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 -~~Lasgs~Dg~I~IWd 918 (918)
.-++++++|-.++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3477889999999996
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=4.1e-21 Score=205.81 Aligned_cols=338 Identities=18% Similarity=0.286 Sum_probs=247.4
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCCcCceeee--eccCCCCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEcc
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF--LSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 648 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~--~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fsp 648 (918)
-+.+.+|+.+.+.+.+..+.+..-.. +.|-+. ...++-...|..+...-+.++ ..+..+....|.+.|.|++.-.
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ek--k~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREK--KFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccc--eEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEec
Confidence 45668899998877666554433322 444443 444444455555554444444 4555555569999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECC--CCce---------ee-----------------------------EeccCCCCeEEEEE
Q 002471 649 DGKLLATGGHDKKAVLWHTD--TLKS---------KT-----------------------------NLEEHSSLITDVRF 688 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~--~~~~---------~~-----------------------------~l~~h~~~V~~l~f 688 (918)
+|++|- |+.|.+|..||-. +.+. ++ +..+|.+..+.++.
T Consensus 298 ~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 997666 9999999999832 1000 00 11258888999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCc
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGT 766 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~ 766 (918)
+|+...++|++.|+.|++|+ + .+++.+ +-...++.|+.|+|.| .++.|...|...+.|+++...+.... ...
T Consensus 377 hps~~q~~T~gqdk~v~lW~-~--~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN-D--HKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred CCChhheeeccCcceEEEcc-C--CceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCce
Confidence 99999999999999999999 2 233322 2356789999999997 67799999999999999976665443 467
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEE
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~ 843 (918)
.+++|+|++..+++++.|+.|+||-+....... .-+.+..+|+.+.|++|+++|.+-+.| .|..|..........++
T Consensus 451 s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 451 SVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 889999999999999999999999876543222 223355899999999999999999999 99999543322211111
Q ss_pred E-----------e----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE----EEEcccCCCeEEEEEeCCCCE
Q 002471 844 E-----------L----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT----MTLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 844 ~-----------~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~----~~~~~h~~~V~~la~spdg~~ 904 (918)
. | ..+...|..++-+.+.+.++++...|+|++|...-... ..+.+|.+.|++++|.-+..+
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 1 1 12333455566667778888888899999998765433 277899999999999988888
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
|++.+.|.+|..|+
T Consensus 611 li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 611 LISTGKDTSIMQWR 624 (626)
T ss_pred EEecCCCceEEEEE
Confidence 88888999999996
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=6.1e-21 Score=204.51 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=232.6
Q ss_pred cccccccCccceeeeeeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEE
Q 002471 618 RGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA 696 (918)
Q Consensus 618 ~~~d~~~~~s~~~~~~l~~H~-~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~La 696 (918)
.-|++..+.-++....++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee
Confidence 346666665666666666554 5799999999985 78999999999999998888888889999999999999996555
Q ss_pred EEeCCCeEEEEeCCCCC----------ce-----------------------------eEEeccCCCCeeEEEEcCCCCe
Q 002471 697 TSSFDKTVRVWDADNPG----------YS-----------------------------LRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~~----------~~-----------------------------~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
|+.|..|..||-.-.. .. .....+|.+..+.++.+|+.+
T Consensus 304 -GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~- 381 (626)
T KOG2106|consen 304 -GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN- 381 (626)
T ss_pred -cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-
Confidence 9999999999842100 00 112236888999999999866
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC
Q 002471 738 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg 817 (918)
++++|+.|+.+++|+-..-...+.+..+..++.|+|.+ .++++...|...++|.++...+..... ..++.+++|+|+|
T Consensus 382 q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred heeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence 45599999999999943334455667788999999998 999999999999999999766665555 8899999999999
Q ss_pred CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------------
Q 002471 818 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------ 884 (918)
Q Consensus 818 ~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------------ 884 (918)
.+||.|+.| .|+||.+..... +....-+++..+|+.+.|++|+.+|.+-+.|-.|.+|.....+.+
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~ 538 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT 538 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence 999999999 999999875432 233333455689999999999999999999999999954433211
Q ss_pred -------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 -------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 -------~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
....+...|..++-+.+.+++|+|.+.|+|+||+
T Consensus 539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 0112455677777778888999999999999985
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.8e-22 Score=203.22 Aligned_cols=256 Identities=20% Similarity=0.331 Sum_probs=215.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEE
Q 002471 652 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 731 (918)
Q Consensus 652 ~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~f 731 (918)
.|++.-.+++++ ...++.+.+|.+.|+.++.......+.+++.|.+.+||.+++ +.|+..+.||.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 455555666643 356778889999999999988878999999999999999998 8899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCC--------e--------------------------eeEEeecC---ceE
Q 002471 732 HPNKDDLICSCDGDGEIRYWSI------NNG--------S--------------------------CTRVFKGG---TAQ 768 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl------~~~--------~--------------------------~~~~~~~~---~~~ 768 (918)
++.+. |+++++.|++-.||.. ... + .+..+.++ +.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99754 6779999999999972 110 0 11112222 234
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 847 (918)
..|...+..+++++.|.+-.+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++ +....+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4577778899999999999999999999999999999999999999999999999999 99999998 45678889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|...|+++.|.-+.+ +++|+.|.+|+|||+++-+.. .....+.+++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999987765 899999999999999886543 4556778899999999888998888888899997
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.6e-22 Score=215.96 Aligned_cols=259 Identities=17% Similarity=0.285 Sum_probs=215.1
Q ss_pred CCCCCcccccccCccceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEeccCCCCeEEEEE
Q 002471 613 RDAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRF 688 (918)
Q Consensus 613 ~~~~~~~~d~~~~~s~~~~~~l~~--H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~f 688 (918)
....+++||+...-.-.++..|.. ....|++|.+.+||+.|++|++-.+|.|||+... +....+....-.+.+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 344567788776544455555543 4578999999999999999999999999999743 444445544566788999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE--EeecCc
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGT 766 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--~~~~~~ 766 (918)
+||.+.+++++.||.|+|||+.+ ...++.|.+|.+.+.||.++++|.+|. +|+-|++||.||+++++.+. .|...+
T Consensus 518 spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred CCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999998 788999999999999999999988776 99999999999999987654 456678
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
.++.++|.+.++++|-..+.|.|...... ..+.+.-|+..|.++.|.+.|+++++.+.| .+..|..--+ ..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeec
Confidence 88899999999999999999999887654 344556699999999999999999999999 8999988766 334433
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
+. ...|.+|.++.|.++|++|+.|+.-.||.+
T Consensus 672 kE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 KE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 32 677999999999999999999998888865
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-20 Score=206.56 Aligned_cols=353 Identities=13% Similarity=0.174 Sum_probs=245.1
Q ss_pred ccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCC-CCCCCcccccccCccceeee
Q 002471 557 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDP-RDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 557 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~-~~~~~~~~d~~~~~s~~~~~ 632 (918)
-.+.|+.+..-++. ++.++||++...=+ ....-.|..|..++..+..++..+ ..........++-++++.+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 45667766655444 67789999987433 222334567788887755533222 12222233333444678888
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.+....+.|++++.+|.++.++.|++||.+++++...++... .|...++.|.+|+|++++..|++|+.||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 899999999999999999999999999988888877665543 344567899999999999999999999999999998
Q ss_pred CCCceeE------Eec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEE
Q 002471 711 NPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 711 ~~~~~~~------~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~ 780 (918)
.+..... .+. +...-|+++.|..++ .|++|+.-|+|.+||...+..+..+ ..++.+++..++++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 7443321 111 134458889888654 5779999999999999999877665 467889999999999999
Q ss_pred EEcCCeEEEEECCCceE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--------------------
Q 002471 781 AAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-------------------- 835 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-------------------- 835 (918)
++.|+.|..|...+.+. ......|...|.+++..++ .|++|+.| .+.+-..+.
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeec
Confidence 99999998887776533 2223457888888888765 66666666 444433221
Q ss_pred ----------------------C------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC--------
Q 002471 836 ----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-------- 879 (918)
Q Consensus 836 ----------------------~------~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~-------- 879 (918)
. .....++........|.+.+.+|+|.+|+.+... .++||.+.
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence 1 0011112222234568889999999988887721 12222111
Q ss_pred ----------------------------------------CCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcE
Q 002471 880 ----------------------------------------ENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFV 914 (918)
Q Consensus 880 ----------------------------------------~~~~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I 914 (918)
+.... .-.+....|+.++.+++|.|||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 11000 001234578899999999999999999999
Q ss_pred EEeC
Q 002471 915 KLWK 918 (918)
Q Consensus 915 ~IWd 918 (918)
.+|+
T Consensus 500 ~v~n 503 (691)
T KOG2048|consen 500 FVYN 503 (691)
T ss_pred EEEE
Confidence 9996
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=3.4e-21 Score=213.69 Aligned_cols=283 Identities=20% Similarity=0.293 Sum_probs=221.9
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceee-----EeccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKT-----NLEEHSSLITDVRFSPSMPRLATSSFDKTV 704 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~-----~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V 704 (918)
..+.||.+-|+++.|+|++..|++++.|+++.||.-++. -=+. .+.+........-|++++..|++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987643 2122 222345568999999999999999999999
Q ss_pred EEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEe------ecCceEEEEecCC
Q 002471 705 RVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------KGGTAQMRFQPHL 775 (918)
Q Consensus 705 ~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~------~~~~~~v~~sp~~ 775 (918)
++|...... .....+.||.+.|.+|+|.|.|++|+ +.+.|-+-|+|-.-..+ .-+.+ .-...|+++.+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999843322 22345679999999999999988666 88999999998755111 11111 1234667777766
Q ss_pred CEEEEEEcCCeEEEEECCC-------------------------------------------ceE---------------
Q 002471 776 GRYLAAAAENVVSILDAET-------------------------------------------QAC--------------- 797 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t-------------------------------------------~~~--------------- 797 (918)
-.|+.++.+..+++|+... +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 6777777778888876421 100
Q ss_pred ------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 798 ------------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 798 ------------------~~~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+..+.+|...|.+++.+|+++++|+++.. .|++|+..+- ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 01244778889999999999999998854 5999998765 55668889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.++|+||+++|++.+.|+++.+|........ ....|...|+++.|+|++.+++|+|.|++|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988655433 3678999999999999999999999999999995
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.2e-21 Score=218.59 Aligned_cols=274 Identities=14% Similarity=0.238 Sum_probs=215.7
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.+|+...+.|+|.++|.+|++++.||.|++|+.... +.-.++..+...|.+++.. +.+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-C
Confidence 379999999999999999999999999999997655 4455555588888888865 44999999999999999987 4
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
..-..+...+-++.+++|+.+|. +++.|+.|-.|++.++......+.+ ++.+.++.|+|.+..+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 44444555678899999999876 5568999999999999887655555 5678899999999999999999999999
Q ss_pred ECCCceEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 791 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 791 D~~t~~~~~~l~~h--------~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
|+.++.+.+++.+- ...+..++|+|+|. +++.+.++.|++|+..+......+. .+.+...+.++.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887766542 34567789999965 5555555599999998774322222 23334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 862 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.||++++.+|.|.|||+.+-.. ......|.|++|.|++..|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998222 344568999999998876655444444443
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=207.20 Aligned_cols=216 Identities=20% Similarity=0.389 Sum_probs=182.5
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECC-CCCEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSP-SMPRLAT 697 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fsp-dg~~Las 697 (918)
.+.+..+|++|.+.-+.++|++. .-+|++|+.|++|++||+... .....+.+|...|.+++|++ +..+|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 45566789999998899999984 458999999999999998732 34567889999999999999 5668899
Q ss_pred EeCCCeEEEEeCCC-CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCC
Q 002471 698 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~ 776 (918)
+++|+.+.|||+++ ..++.....+|.+.|+|++|+|.+..+||+|+.|++|++||+|+-+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence 99999999999995 3566778889999999999999999999999999999999998643
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 002471 777 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS-----------EGECVH 843 (918)
Q Consensus 777 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~-----------~~~~i~ 843 (918)
++++++.+|+..|.+|.|+|... +|++++.| .+.|||+..-. ..+.+.
T Consensus 307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 24567788999999999999766 88888888 99999996532 235567
Q ss_pred EeccCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSE 880 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~-s~s~dg~I~vwd~~~ 880 (918)
...+|...|..+.|+|...+++ +++.|+.+.||....
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7888999999999999998754 567788999999764
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=208.69 Aligned_cols=227 Identities=21% Similarity=0.269 Sum_probs=194.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 711 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~----- 711 (918)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+||.|+-||.+|+|||.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999999997742
Q ss_pred ---CCceeEEeccCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCC
Q 002471 712 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 712 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
.-.++..|..|.-+|+++...+.+ +..++|++.|.+|++||+..+..+.++ ...+.++..+|-+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 235678899999999999887652 335669999999999999999988765 45678899999999999999999
Q ss_pred eEEEEECCCc----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002471 786 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 786 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 846 (918)
.|.+.++... ..+..+.+|.. .|+|++++-||.+|++|+.| .|+|||+.+. .|++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876532 34556778888 99999999999999999999 9999999776 6676666
Q ss_pred cCCCceEEEEEeCCCCEEEE
Q 002471 847 CNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s 866 (918)
...++|+.+.+.|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 56788888888665444444
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1e-20 Score=192.82 Aligned_cols=224 Identities=18% Similarity=0.304 Sum_probs=183.6
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
.|..+|.+|+|.+ ...+++|+.||.|+++|+.++. ...+..|...|.||.+++....+++|+.|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 3788999999987 4578999999999999998876 455667999999999999888999999999999999986 444
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-----EeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-----~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
+..+. ....|.++... ++ .|+.|+.|..|.+||+++..... .++-.+.++++.|.+.-+++++-||+|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44444 33489999887 33 44578889999999999875432 345567899999998999999999999887
Q ss_pred ECCCc----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 791 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 791 D~~t~----~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 76655 55666777753 68999999998899999999 9999999776 45555555577899999
Q ss_pred EeCCCCEEEEEEc
Q 002471 857 FHPTYPSLLVIGC 869 (918)
Q Consensus 857 ~sp~g~~l~s~s~ 869 (918)
|+.+|..|+++++
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999875
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.1e-20 Score=205.17 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=225.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
+.--...|+|+||+.+.+.||.+-.||.|.||++.. .-+...+.++ ...|..|+|+ ++.+|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 334467899999999999999999999999999985 4455566655 4679999999 566889999999999999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceEEEEecCCCEEEEEEcCCe
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.||.
T Consensus 100 -lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 100 -LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred -CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 777888888899999999999876 4557888999999998888765432 356788999999999999999999
Q ss_pred EEEEECCCceEEEEec-------C-CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 787 VSILDAETQACRLSLQ-------G-HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~-------~-h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
|++||+.++..++... . ...-|+++.|-.++.++..-+.++|.+||...+ ..+..+..|...|.+++..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALAVA 254 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEEEc
Confidence 9999999987666221 1 233478888886654443334449999999877 6778888899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcE--E---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~~~~--~---~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+++.++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.+
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999888877643 1 45578999999999888 8999999998865
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=8.4e-21 Score=201.92 Aligned_cols=291 Identities=17% Similarity=0.274 Sum_probs=214.6
Q ss_pred ccceeeeeeecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECC-CCCEEEEE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP-SMPRLATS 698 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg 698 (918)
..+.....++-+.++|+|++|+|.. +++|+|..-|.|-+||+. ....+..+..|+..|.+|.|+| +...|++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3556777888999999999999955 588999999999999994 3344667889999999999999 45689999
Q ss_pred eCCCeEEEEeCCCCC-ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEeecCceEEEEec
Q 002471 699 SFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQP 773 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp 773 (918)
|+||+||+-|+++.- ..+..+......+.++.|+.+...++ .++.=|...+||++++.. ++..+..+..++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999999999998622 12223333445667788887766555 666667999999998754 233345788899999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCce----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC----CCCcceEE
Q 002471 774 HLGR-YLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS----GSEGECVH 843 (918)
Q Consensus 774 ~~~~-ll~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s----~~~~~~i~ 843 (918)
-..+ +++++.|++++|||++.-. ++.....|...|.++.|+|++-.|++.+.| .|+|||..- ......|.
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 8866 4556679999999998642 234445699999999999988778888888 999999841 11111111
Q ss_pred EeccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccC-CCeEE-EEEeCCCC-EEEEEecCCcEEEe
Q 002471 844 ELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE-GLIAA-LAVSTETG-YVASASHDKFVKLW 917 (918)
Q Consensus 844 ~~~~~~~~--i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~-~~V~~-la~spdg~-~Lasgs~Dg~I~IW 917 (918)
.-..+... .....|.|+..+|++|-.-..|.|||-..++.+ .+.... ..|.+ ..|+|-+. +++.++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 11111122 345689999999999999999999999999865 433333 24554 47899887 45455567889988
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-21 Score=205.74 Aligned_cols=285 Identities=18% Similarity=0.256 Sum_probs=208.4
Q ss_pred cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccC----CCCCCCCCCcccccccCc-cceeeeeeecCCCCeEEEE
Q 002471 571 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD----DTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCH 645 (918)
Q Consensus 571 ~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~----~~~~~~~~~~~~d~~~~~-s~~~~~~l~~H~~~V~~l~ 645 (918)
+..++|||..+.+...+.-..... ..+.-..|-..+ .....+...+.|+..... +...+..+.+. .-.|++
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~--pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAE--PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVA 86 (673)
T ss_pred CCceEEeecccccCccccccCCCC--CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHh
Confidence 345688998887765554332222 222222332211 112223333333333221 12222222222 445555
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccC-CC
Q 002471 646 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SA 724 (918)
Q Consensus 646 fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~ 724 (918)
......|+++|+..++|+|||+....+.+.+++|...|+++.|+....+||+++..|.|.|..+.+ +.....|... ..
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQ 165 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCC
Confidence 555568999999999999999998888888999999999999999999999999999999999998 4444555543 44
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 804 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h 804 (918)
.|.-+.|++..+.+|.+++++|.|.+||+.....+..+ .+.|
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--------------------------------------~~~H 207 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--------------------------------------SEAH 207 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--------------------------------------hhhc
Confidence 56689999999999999999999999998765433221 2458
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 805 TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 805 ~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
..+...|||+|... +|++.+.| .|.+||++......++.. ..++..++|.++|.+|++|...|.|..||++..+
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 89999999999665 88899999 999999987654444433 6789999999999999999999999999999876
Q ss_pred EE--EEcccCCCeEEEEEeCCC
Q 002471 883 TM--TLTAHEGLIAALAVSTET 902 (918)
Q Consensus 883 ~~--~~~~h~~~V~~la~spdg 902 (918)
.- .+..|...|++|+|-+.-
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEeeecccceeEEEeeecc
Confidence 33 778999999999997764
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6.9e-21 Score=198.04 Aligned_cols=246 Identities=21% Similarity=0.424 Sum_probs=197.1
Q ss_pred eecCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECC----------------CCceeeEeccCCCCeEEEEECCC-CCE
Q 002471 634 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPS-MPR 694 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~----------------~~~~~~~l~~h~~~V~~l~fspd-g~~ 694 (918)
.-.|.+.|+-+.-++-+ .+.|+-+..|.|.|||+. ..+++.++.+|...-+.|+|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34678888888877754 466666788999999974 24667888999999999999993 336
Q ss_pred EEEEeCCCeEEEEeCCCCCcee--EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEe
Q 002471 695 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 772 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~s 772 (918)
|++|..-+.|++|...++...+ ..|.+|+..|-.|+|+|..+.+|++|+.||+|+|||++.+....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------ 294 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------ 294 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc------------
Confidence 8888888889999998754433 45778999999999999999999999999999999999873211
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002471 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 773 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
++ ..+.|...|+.|.|+.+..+|++|++| +++|||++..+....+..++.|..+
T Consensus 295 ------------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 11 125688899999999988899999999 9999999998888999999999999
Q ss_pred eEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCC-CCEEEEEec
Q 002471 852 FHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTE-TGYVASASH 910 (918)
Q Consensus 852 i~~i~~sp~-g~~l~s~s~dg~I~vwd~~~~~~-----------------~~~~~h--~~~V~~la~spd-g~~Lasgs~ 910 (918)
|+++.|+|. ...|++++.|..|.|||+....- ..+..| ...|..+.|++. -.+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 999999995 46688889999999999854321 023334 346888999874 348888888
Q ss_pred CCcEEEe
Q 002471 911 DKFVKLW 917 (918)
Q Consensus 911 Dg~I~IW 917 (918)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 4455
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=213.46 Aligned_cols=239 Identities=17% Similarity=0.267 Sum_probs=201.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 677 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 677 ~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
..|....+.|+|.++|+.|++++.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987753444455447888888887633 5669999999999999876
Q ss_pred e---eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 757 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 757 ~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
. .+..|.....+++|+.+|..+++|+.|-.|++.++.+......+++|+.+|.++.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4 567778889999999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCCCCcceEEEec----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCE
Q 002471 833 VGSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGY 904 (918)
Q Consensus 833 l~s~~~~~~i~~~~----~~-~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~--~~h~~~V~~la~spdg~~ 904 (918)
+.++.....+..+. .. ...+..++|+|++..|++.+.|+.|++|+..+.+.. .+ ..+...+.++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98774322222211 11 344677899999999999999999999999998876 33 334555999999999999
Q ss_pred EEEEecCCcEEEeC
Q 002471 905 VASASHDKFVKLWK 918 (918)
Q Consensus 905 Lasgs~Dg~I~IWd 918 (918)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.4e-20 Score=199.19 Aligned_cols=256 Identities=15% Similarity=0.220 Sum_probs=202.4
Q ss_pred EeCC-CcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 656 GGHD-KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 656 gs~D-g~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
++.| .++.+||+.+|....++++.. ..-.++..- ++.+++++.. ...|.+|.+....... ...--.++|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 459999999999999988652 111111111 3456766654 5579999997633333 333456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC---------CceEEEE
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLS 800 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~---------t~~~~~~ 800 (918)
|+|.+ ++.|+..|.|++|.+.+|..+..+.. .++++.|+.++..|++++.||.|.+|++. +-++++.
T Consensus 91 n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99764 44676899999999999998887765 47889999999999999999999999753 3467888
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002471 801 LQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 801 l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd 877 (918)
+..|.-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999988754 389999999 9999999887 33433332 67899999999999999999999999988
Q ss_pred CCCCc-----------------EEEEcccCC--CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 878 MSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 878 ~~~~~-----------------~~~~~~h~~--~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.... ...+.+|.+ .|+|++++-||..|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 75322 125778888 999999999999999999999999997
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-20 Score=199.38 Aligned_cols=241 Identities=22% Similarity=0.417 Sum_probs=191.3
Q ss_pred EEEEEcc-------CCCEEEEEeCCCcEEEEECCC---CceeeE------------------eccCCCCeEEEEECCC-C
Q 002471 642 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPS-M 692 (918)
Q Consensus 642 ~~l~fsp-------dg~~Latgs~Dg~V~iwd~~~---~~~~~~------------------l~~h~~~V~~l~fspd-g 692 (918)
.|++|.. -|+|+|.|+.|..|.|||++- -.+..+ -.+|+..|.+|+|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 357999999999999999851 111111 2269999999999885 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEEeecCceEE
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 769 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~~~~~~~~v 769 (918)
..||+||.|.+|++||+.+ +.+..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 5789999999999999998 8889999999999999999999999999999999999999994 34456677899999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 770 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 770 ~~sp~~~-~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
.|.+... .++++..||+|+-+|+|.. ++++++..|..+|.+|+++..-. ++++++.+ .|++|++..... +.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999875 4666667899999999986 99999999999999999998555 78888888 999999965432 223222
Q ss_pred ccCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCcEE
Q 002471 846 SCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222344677778887765 455566667999999877544
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.8e-21 Score=212.13 Aligned_cols=253 Identities=21% Similarity=0.341 Sum_probs=197.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--------CCceeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--------~~~~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
+|....+++.|.+.|++++|.+....|++|+.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 466667999999999999999999999999999999999982 346788999999999999999999999999
Q ss_pred eCCCeEEEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---Cc
Q 002471 699 SFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT 766 (918)
Q Consensus 699 s~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~ 766 (918)
+.||+|+.|++.. .......+.||.+.|+.++++....+|+ +|+.||+|++|+...... .+|.. +.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999995531 1234567889999999999999866655 999999999999887655 33321 22
Q ss_pred --eEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 767 --AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 767 --~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|...+.+++.++ .|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 233332222 22222222333344444444333333321 1347788999999999999999 999999988
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 836 ~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
+ ..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 521 ~---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 521 G---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred c---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 7 778888888999999999999999999999999999999877766
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.1e-20 Score=190.18 Aligned_cols=288 Identities=19% Similarity=0.354 Sum_probs=221.4
Q ss_pred cceeeeee-ecCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEECCC-C--ceeeEec--cCCCCeEEEEECCC----
Q 002471 627 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDT-L--KSKTNLE--EHSSLITDVRFSPS---- 691 (918)
Q Consensus 627 s~~~~~~l-~~H~~~V~~l~fsp-----dg~~Latgs~Dg~V~iwd~~~-~--~~~~~l~--~h~~~V~~l~fspd---- 691 (918)
.++....+ +.|+.+|..++|.. +...+|+++. ..|.||.... + ..+..+. .|......++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 44444444 47889999999985 2346777764 4788888653 2 2223322 36777888888764
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------C
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 765 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~ 765 (918)
..+||.|+.-|.|||.|+.+ +.+...+.+|...|+.|.|+|+...|+++++.|-.||+||+.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999997 7888999999999999999999999999999999999999999999999854 5
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceE------E---------------------E-EecCCCCCeEEEEEcCCC
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQAC------R---------------------L-SLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~------~---------------------~-~l~~h~~~V~si~~spdg 817 (918)
+.++.|+.++.++++++.|..|.+|++...+. . + +...|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 78899999999999999999999999884211 1 0 112366777777777 6
Q ss_pred CEEEEEeCC-eEEEEECCCC-----------CCcceEEEeccCCCceE--EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002471 818 ELLASVSED-SVRVWTVGSG-----------SEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCYQSLELWNMSENKT 883 (918)
Q Consensus 818 ~~Las~s~d-~I~iwdl~s~-----------~~~~~i~~~~~~~~~i~--~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~ 883 (918)
+++++-+.+ .|..|....- .....+.+++.....|+ ..+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 888887776 9999987211 11223344444444444 445677789999999999999999988765
Q ss_pred E---E--EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 884 M---T--LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 884 ~---~--~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. + .......|...+|+.|+.+|+..++|++|--||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2 223456799999999999999999999999886
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.7e-22 Score=220.57 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=182.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
..+..|.+|..+|.||.|+.+..+|++|+.+|+|++||++..+.++++.+|...+..|.|+|-+.+++.|+.|+.+++||
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCC
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg 785 (918)
++. ..|...+.+|...|.+++|+|+|. +++++++|.+|+|||+..|+....|+ +.+..+.|+|..-.+..|+.|+
T Consensus 141 ~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 141 IRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 996 678999999999999999999976 55699999999999999999998888 5667788899888888899999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 829 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~ 829 (918)
+|++||+++.+.+.........|.+++|++++..+++|....++
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999999999999888888999999999999999988877544
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.6e-20 Score=192.49 Aligned_cols=284 Identities=19% Similarity=0.251 Sum_probs=214.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC------CceeeEec-cCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~------~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+.+.+.+|.++|++|.|+.++.+||+|+.|..++||+++. .+++.... .|...|.|++|...++.|++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4566889999999999999999999999999999999863 24444443 3568999999999999999999999
Q ss_pred eEEEEeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe------eeEEeecCceEEEEecC
Q 002471 703 TVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~sp~ 774 (918)
+|.+.|+++ +..+.++.. ..+.|+.+..+|. +++|++.+.++.|.+||++... |...+......+.|+|.
T Consensus 128 ~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIET-KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccc-ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999998 555555542 3358999999998 4566688999999999998754 22233345567889998
Q ss_pred CCEEEEE-EcCCeEEEEECCCceE-EEEe---cC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 775 LGRYLAA-AAENVVSILDAETQAC-RLSL---QG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 775 ~~~ll~~-~~dg~I~i~D~~t~~~-~~~l---~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
...|+++ ...+.+.+||.+.... +... .+ ......++.|+|+|..|.+.-.+ .-.+||+.+.. ..+..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEec
Confidence 8766554 5578899999987532 2211 11 12234678999999988877777 67788886532 122222
Q ss_pred cc------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CcEEEEcccCCCeEE
Q 002471 846 SC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE------------------------NKTMTLTAHEGLIAA 895 (918)
Q Consensus 846 ~~------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~------------------------~~~~~~~~h~~~V~~ 895 (918)
.. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 21 123466778876665 88888888999998742 123367899999999
Q ss_pred EEEeCCCCEEEEEecCCcEEEeC
Q 002471 896 LAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 896 la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.|++...+|++.+..+.++||-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999993
No 144
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=185.29 Aligned_cols=224 Identities=16% Similarity=0.279 Sum_probs=176.7
Q ss_pred ceeeeeeecCCCCeEEEEEccCCC--EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
-+....+-.|.+.|+|+.|.++-. .|++|+.||.|.+|++..++++.++++|.+.|+.|+.+|.+++-++.+.|+.++
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 345667888999999999999765 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE-ecCCCEEEEEEcC
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAAE 784 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~ll~~~~d 784 (918)
.||+-++..-...-..+. -+.|.|+|.|+++++.+ ...|-+|.+++.+....+......++. .-+++.+++|..+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred eehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCC
Confidence 999987433222222232 33499999998777554 467999999988777666555333322 2355789999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEE--cCCCCEEEEEeCC-eEEEEECCCCC--CcceEEEeccCCCceEEEE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCW--DPSGELLASVSED-SVRVWTVGSGS--EGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~--spdg~~Las~s~d-~I~iwdl~s~~--~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|.+||..+..+...+.+|+..|..+.+ .|++.+|++++.| .|+|||++... ....+.++.. ...++|+.
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~ 304 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR 304 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence 99999999999999999999999999984 4567899999988 99999997652 2234444433 34444443
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.2e-21 Score=214.06 Aligned_cols=236 Identities=19% Similarity=0.317 Sum_probs=193.0
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 641 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
+..|.|.. +.++|||++..|.|.+||+.. .+.+..|..|...|++++|++ ...+|++||.||+|++||++. ...
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence 45567764 568999999999999999986 566778999999999999998 456899999999999999998 666
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeE---EeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~---~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
..++.+....|.++.|+|...+.|+++.+.|.+.+||++... +.. ...+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777888899999999999988899999999999999999754 333 3456789999999999999999999999999
Q ss_pred CCCceE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-CCCEE
Q 002471 792 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL 864 (918)
Q Consensus 792 ~~t~~~--~~~l~~h~~~V~si~~spdg~-~Las~s~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp-~g~~l 864 (918)
..+.+. +.++. ...+|.+|+|-|+.. .|++++. | .|+|||++.. ......+..|...++.++|.. |...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCceee
Confidence 986543 33333 457899999999877 6666654 3 8999999853 466778889999999999966 44567
Q ss_pred EEEEcCCeEEEEECCC
Q 002471 865 LVIGCYQSLELWNMSE 880 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~ 880 (918)
.+++.|+.|..-.+++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 7888888766544433
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.6e-20 Score=185.38 Aligned_cols=206 Identities=20% Similarity=0.336 Sum_probs=166.8
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC-----------cee---EEeccCCCCeeEEEEcCCCCeEEEE
Q 002471 677 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG-----------YSL---RTFMGHSASVMSLDFHPNKDDLICS 741 (918)
Q Consensus 677 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~-----------~~~---~~~~~h~~~V~sl~fsp~~~~ll~s 741 (918)
+.|.+.|+.+...+ .|+++++|+.||.|.|||+.+.. .++ ..-.+|...|.++.|.|-+..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45788999999988 68999999999999999998532 111 1223688899999999988889999
Q ss_pred EeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCC--CEEEE-EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002471 742 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL--GRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~--~~ll~-~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 816 (918)
++.|.+++|||..+......|+ +.+..-+++|-. ..|++ +..+-.|++.|+.+|.+.+++.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988776654 556666676654 23444 455678999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 817 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 817 g~-~Las~s~d-~I~iwdl~s~~------------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
.+ .|++|+.| .|++||++... ....+..-..|.+.|..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 88 67788888 99999998541 111222234567789999999999999999999999999998775
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=184.54 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=181.0
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC----ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
+..+++|.+.|+|++|+.||++|+|++.|++||||++++-. .+++.-. .-+.-+.+.|.||-..+++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998521 1222111 112456799999999999899888999
Q ss_pred EEEEcCCCe---eeEE--------e----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 749 RYWSINNGS---CTRV--------F----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 749 ~iwdl~~~~---~~~~--------~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
++|.+...+ .... | ...+..+-.-..+.++++++.|..|.+|+++ |..+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 999875432 1100 1 1122233344455677888889999999999 8888888777777788899
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCC-----CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----
Q 002471 814 DPSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----- 882 (918)
Q Consensus 814 spdg~~Las~s~d-~I~iwdl~s~-----~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~----- 882 (918)
+|+|++|++++.- .|+||.+--. .+...+..+++|...|..++|+++...+++.+.||+++|||++-.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999888 8999997432 3345677899999999999999999999999999999999985321
Q ss_pred --EE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 883 --TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 883 --~~-----~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
++ .+..-.+.-..++++|+|..||.+. ...|++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1222334445899999999887643 4456654
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-21 Score=224.49 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=216.2
Q ss_pred eEEEEEccCCC-EEEEEe----------CCCcEEEEECCCC--c----eeeEeccCCCCeEEEEECCCCCE----EEEEe
Q 002471 641 VICCHFSSDGK-LLATGG----------HDKKAVLWHTDTL--K----SKTNLEEHSSLITDVRFSPSMPR----LATSS 699 (918)
Q Consensus 641 V~~l~fspdg~-~Latgs----------~Dg~V~iwd~~~~--~----~~~~l~~h~~~V~~l~fspdg~~----Lasgs 699 (918)
-..++|+|++. +||+|. .+.++-||.++.. + .+..+. .....++|+|.+.+.. ||.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 34578999886 555543 3456667765422 2 222222 3456889999997665 88889
Q ss_pred CCCeEEEEeCCCC-----CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-----ecCceEE
Q 002471 700 FDKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQM 769 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-----~~~~~~v 769 (918)
+||.|.+||...- ...+..+..|++.|..|+|++..++++++|+.||.|.|||+.+-+.-..+ ...+.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998751 23456778899999999999999999999999999999999886544333 3467888
Q ss_pred EEecCCCEEEEEE-cCCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcce
Q 002471 770 RFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGEC 841 (918)
Q Consensus 770 ~~sp~~~~ll~~~-~dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~-~Las~s~d----~I~iwdl~s~~~~~~ 841 (918)
+|+..-.++++.+ .+|.+.|||++..+.+..+..+.. .+..+.|+|+.. .|+++++| .|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 9988877666654 567999999999988888876654 477899999876 45555544 79999998653 55
Q ss_pred EEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEecCCcEEEe
Q 002471 842 VHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 917 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~-~Lasgs~Dg~I~IW 917 (918)
++++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+......+..+.|+|... .|+.++-||.|-||
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 66778999999999999977 88999999999999999999998 7777888999999999776 78888999999987
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=6.2e-20 Score=195.37 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=201.6
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCC---CCCceeEEeccCCCCeeEEEEcCCCCeEE
Q 002471 665 WHTDTLKSKTNLEEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI 739 (918)
Q Consensus 665 wd~~~~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~---~~~~~~~~~~~h~~~V~sl~fsp~~~~ll 739 (918)
+|+.+......++.+...|++++|+|.. ++||+|..-|.|-+||+. ....-+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4445556667777889999999999954 478888889999999994 33345778889999999999999988888
Q ss_pred EEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEE
Q 002471 740 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 813 (918)
Q Consensus 740 ~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~ 813 (918)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..=|.+.+||.+++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999988653333322 234566777888888888878999999998755 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 002471 814 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 886 (918)
Q Consensus 814 spdg~-~Las~s~d-~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~----~~~~~~~ 886 (918)
+|-.. +|++++.| +++|||++.-.... .+.....|...|.++.|+|.+-.|++.+.|..|+|||.. ..+....
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99666 88999999 99999998764433 345555678899999999999889999999999999984 2233333
Q ss_pred cccCC------CeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 887 TAHEG------LIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 887 ~~h~~------~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..|.. ......|.|+..+|++|-.-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33332 234568999999999999888888875
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-20 Score=221.46 Aligned_cols=242 Identities=19% Similarity=0.359 Sum_probs=200.9
Q ss_pred CCCeEEEEEccCCCE----EEEEeCCCcEEEEECCC------CceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEE
Q 002471 638 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 706 (918)
Q Consensus 638 ~~~V~~l~fspdg~~----Latgs~Dg~V~iwd~~~------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~I 706 (918)
..+.++++|.+.|.. ||.|.+||.|.+||... ...+.++..|.+.|..|.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446788999987765 89999999999999764 244566778999999999999755 9999999999999
Q ss_pred EeCCCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEEEEecCCCE-EE
Q 002471 707 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGR-YL 779 (918)
Q Consensus 707 wdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~-ll 779 (918)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+... ++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875444332 2235678999999998889999999999999999999876666543 3457899999854 55
Q ss_pred EEEcCC---eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 780 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 780 ~~~~dg---~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
+++.|. .|.+||+|.. ..+.++++|...|.++.|++.+ ++|++++.| .|.+|+.+++ +.+.++...++++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 7999999865 5677788999999999999966 799999999 9999999987 78888888889999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002471 854 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 854 ~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~ 882 (918)
.+.|+|... .|++.+.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 77888999999999987665
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=196.88 Aligned_cols=269 Identities=17% Similarity=0.268 Sum_probs=212.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++|+|+.|+.|.||.-.-.+. .-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 899999999999888775 55899999999999999999999999999999999999999999999998764332 22
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 798 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~ 798 (918)
..|.+.|.|+.|+|-.. .+++|+- ...-+|........+ .....+.++.|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999855 4557764 457788876544332 22345677889999999999999999999865433322
Q ss_pred EE--ecCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 799 LS--LQGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 799 ~~--l~~h~~~V~si~~spdg-----~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.. -.+..++|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-+.-+....|+.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 22 22467899999999953 367777777 788887743 2232222234456788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.+++|.-+.-.+-++...+..|+.++..|++.+++.|+.||+|--|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999866555557777889999999999999999999999997653
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=199.43 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=187.0
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE--eccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEe
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWD 708 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwd 708 (918)
.....|.+.|.++.|-|....|++++.|.++++||++..+++.. +.+|...|.+++|.+++ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999778999999999999999998888777 88999999999999954 5789999999999999
Q ss_pred CCCCCc--------------------------eeEEeccCCCCeeE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002471 709 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 758 (918)
Q Consensus 709 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~ 758 (918)
++-.+. .++..+.+...|.+ +.+..|.. .|++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccccc
Confidence 974220 01222334444544 44555645 4556666 99999999997654
Q ss_pred eEEe--------------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002471 759 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 820 (918)
Q Consensus 759 ~~~~--------------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~--V~si~~spdg~~L 820 (918)
.... ..+..++.....|.++++.+.|+.|++|++.+. .++..+.++... ...-..+||+.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3221 123456777778899999999999999999875 344444443322 2223568999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~ 881 (918)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998764 3445567788899999998743 34777799999999999654
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=189.86 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=200.8
Q ss_pred eeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceee--EeccCC-CCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 630 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.+..+.-...+|.+++|.|+|. .+++++....+++||+.+.+... .+.++. ..+.....++++.+|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666677999999999998 99999999999999998766433 333443 4577888999999999999999999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~ 781 (918)
|....+ +..+..++ -.+.|.+++|+.++..++ +++.+|.|.+||++...|++.+.. +.+.++.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 999887 66666666 567899999999987766 566689999999999999998863 45678888999999999
Q ss_pred EcCCeEEEEECCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCCce
Q 002471 782 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 782 ~~dg~I~i~D~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+..|.|.|||..+ .+++..+..-...|+++.|++|..+|+.++.. .+|+..+.+.....-.-.....-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999654 46777777777889999999999999988865 79998886652222222222334568
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
+|++|+|.+.++++|..+|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=4.5e-19 Score=196.98 Aligned_cols=291 Identities=19% Similarity=0.266 Sum_probs=222.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCC---CEEEEEeCCCcEEEEECCCCc---------------------eeeE-------
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLK---------------------SKTN------- 675 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~V~iwd~~~~~---------------------~~~~------- 675 (918)
+|..+..++||++.|.+|+|..-+ -+||++|.|..||||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 788999999999999999998744 489999999999999864211 1111
Q ss_pred ---eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce------eEEeccCCCCeeEEEEcCCCCeEEEEEeCCC
Q 002471 676 ---LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746 (918)
Q Consensus 676 ---l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 746 (918)
+.+|.+.|.++.|+|.+..|++++.|+++.||..++.... +....+.....++.-|+|+++.+ ++-+..|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i-i~~g~~G 338 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI-IAHGRTG 338 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE-EEecccC
Confidence 2389999999999999999999999999999988763211 11222344568889999998654 4778899
Q ss_pred cEEEEEcCCCe-e--eEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCC----ceEEEEecCCCCCeEEEEEcCC
Q 002471 747 EIRYWSINNGS-C--TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 747 ~I~iwdl~~~~-~--~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~si~~spd 816 (918)
..++|...... . ...+ ..++..+.|.|.|.++++++.|-+-++|-.-. ...+..-..|...++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833221 1 1122 23567899999999999999999999986541 1223333458888999999986
Q ss_pred CCEEEEEeCC-eEEEEECCCC-------------------------------------------CC--------------
Q 002471 817 GELLASVSED-SVRVWTVGSG-------------------------------------------SE-------------- 838 (918)
Q Consensus 817 g~~Las~s~d-~I~iwdl~s~-------------------------------------------~~-------------- 838 (918)
...|++|.+. -+|+|+.... ..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 5567777777 7899974210 00
Q ss_pred ----------------cceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE-EEcccCCCeEEE
Q 002471 839 ----------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM-TLTAHEGLIAAL 896 (918)
Q Consensus 839 ----------------~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~-~~~~h~~~V~~l 896 (918)
...++.+-+|+..|.+++.+|+++.+++++... .|++|+..+-... .+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 001123456888999999999999999987653 7999999887776 699999999999
Q ss_pred EEeCCCCEEEEEecCCcEEEeC
Q 002471 897 AVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 897 a~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+|||++|++++.|.++.+|+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.8e-17 Score=182.53 Aligned_cols=293 Identities=30% Similarity=0.495 Sum_probs=231.5
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 693 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~- 693 (918)
....|+... .......+..|...|.+++|++++.++++++. |+.+++|++...+.+..+.+|...|.+++|+|++.
T Consensus 135 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 135 TVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred cEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 334444433 25778889999999999999999999999886 99999999999899999999999999999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEEe---ecCceE
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQ 768 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~~---~~~~~~ 768 (918)
.+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+ ...+.+
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 289 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEE
Confidence 555558999999999885 55666 688888876 44899998 4555999999999999987664 4444 345677
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEE
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~ 844 (918)
+.|.|++..+++++.|+.+.+||..+........ .|...|..+.|.+++..++.+ ..+ .+.+|++.... ....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~ 366 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKT 366 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEE
Confidence 7899988888888888889999999887776665 788889999994332555555 566 88889998764 2222
Q ss_pred eccCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s-~s~dg~I~vwd~~~~~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+.+++.++++++.++.+++|+
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222 22278888888 533444 578899999999999888555544 8899999999999999999999999996
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.5e-19 Score=195.74 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=198.4
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEE
Q 002471 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (918)
Q Consensus 671 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 750 (918)
.+-..+++|++.|.||...|.|.+|++|+.||+||||.+.+ +.|++++. ..+.|.||+|+|.+..-|++...+..+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 34556789999999999999999999999999999999998 88888876 56689999999987765545554555666
Q ss_pred EEcCCCe---------------------------------------eeE-EeecCceEEEEecCCCEEEEEEcC---CeE
Q 002471 751 WSINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVV 787 (918)
Q Consensus 751 wdl~~~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~ll~~~~d---g~I 787 (918)
.+..-|. |+. .....+..+.|+..|.+|+++..+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 6543221 010 112245668899999999998775 479
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
.|+++...+....|....+.|.++.|+|...+|++++...|+|||+... ..++.+......|..++.||.|..|+++
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999988776666766778899999999999999999999999999764 5556666667789999999999999999
Q ss_pred EcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 868 GCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
+.|+.++.||+.-.... ++.-|...|++++|++.-.++++|+.||++.||
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999999766433 788999999999999999999999999999987
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=6.8e-19 Score=179.90 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=204.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC-----C-------ceeeEec-cCCCCeEEEEEC-------CCCCEEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----L-------KSKTNLE-EHSSLITDVRFS-------PSMPRLATS 698 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-----~-------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasg 698 (918)
.-...+.|+|||..|++-+.|..+.+|++.. . +....++ .....|.+.+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3456789999999999999999999998741 1 1111122 234568888886 467789999
Q ss_pred eCCCeEEEEeCCCCCceeEEecc--CCC---CeeEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeeEEe----------
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF---------- 762 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl-~~~~~~~~~---------- 762 (918)
+.|.-|++||.-+ ++....+.+ |-+ ...+++|+|||..|+ ++....|++||+ +.|.....+
T Consensus 130 sr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999988 444444432 333 345799999998776 566899999999 555422221
Q ss_pred ecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc
Q 002471 763 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 839 (918)
Q Consensus 763 ~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~ 839 (918)
.+-+.+++|+|... .+++++...++-||.-....++..+.+|.+.|+.++|.++|+.|++|... .|..||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 23457788999876 66777778899999998999999999999999999999999999999865 99999998653
Q ss_pred ceEEEeccCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 840 ECVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 840 ~~i~~~~~~~~---~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
..+..+..|.. .-.-+...|++.+|++|+.||.|++||+++ +..+ .+..+...|+.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 34444444433 223345678999999999999999999998 5544 677899999999999998888887643
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.8e-19 Score=178.83 Aligned_cols=273 Identities=15% Similarity=0.226 Sum_probs=200.7
Q ss_pred cccEEEEcCCCeeec---cCCCeeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeee
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 632 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~ 632 (918)
.-++.|++-|.+++. ++.+-|||..+ +...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T----------------------------------------------~~iar 59 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT----------------------------------------------FRIAR 59 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc----------------------------------------------cchhh
Confidence 457889999998876 34445676543 33445
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~ 711 (918)
.+.+|..+|.|++||+||++|+|++.|..|++||+..+.+++.++ ...+|+.+.|+|.... +++.-.+..-.+-++..
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 677899999999999999999999999999999999999888887 5778999999995443 33333344455555554
Q ss_pred CCceeEEecc---CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEEEcC
Q 002471 712 PGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 712 ~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~~~d 784 (918)
+...+..... -...-.+..|.+.|+++ ++|...|.+.++|..+.+|+..++- .+..+.++..+..++.-+.|
T Consensus 139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred CceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 2221111111 01112223577777654 5999999999999999999988864 45668899999999999999
Q ss_pred CeEEEEECCCc-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCC-C
Q 002471 785 NVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNG-N 850 (918)
Q Consensus 785 g~I~i~D~~t~-------~--~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~-~ 850 (918)
..|+.|+++.- + ..+.+.. .+..-.+++|+.+|.|+++++.. .++||.-..| ..++.+.+.. .
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE 294 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGE 294 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchh
Confidence 99999998732 1 1111111 22345688999999999998877 8999999887 5666666655 5
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
....+.|+|-...+++. ..|.|++|....
T Consensus 295 ~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 295 ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecccccceeeeeec-cCCceEEEEeec
Confidence 57788999998877777 778999998654
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=6.4e-19 Score=183.50 Aligned_cols=212 Identities=19% Similarity=0.362 Sum_probs=160.3
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCcee---eEeccCCCCeEEEEECCC-CCEEEEEeCC
Q 002471 627 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPS-MPRLATSSFD 701 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~~~---~~l~~h~~~V~~l~fspd-g~~Lasgs~D 701 (918)
.++++.++.+|...=+.|+|||- ...|++|..-+.|++|...++.-. ..|.+|+..|.+|.|+|. ...|++||.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 67889999999999999999993 236889988899999998775432 346679999999999995 5588999999
Q ss_pred CeEEEEeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEE
Q 002471 702 KTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 702 g~V~Iwdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~ 780 (918)
|+|+|||++.+ .+.....+.|.+.|+.|.|+..-. +|++|+.||+++|||++..+
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~----------------------- 335 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK----------------------- 335 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc-----------------------
Confidence 99999999974 233444588999999999998866 88899999999999998643
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcc--------e-------EE
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGE--------C-------VH 843 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~--------~-------i~ 843 (918)
.+.++..|+-|..+|++|.|+|... .|++++.| .|.|||+....... . +.
T Consensus 336 -------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 336 -------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred -------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 2355667788999999999999544 66666666 99999996542210 0 11
Q ss_pred EeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 002471 844 ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELW 876 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vw 876 (918)
.+......+..+.||+..+ +|++.+.|| +.||
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1111234567788988765 455555555 4444
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=5.8e-17 Score=183.10 Aligned_cols=282 Identities=30% Similarity=0.537 Sum_probs=228.2
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCC-CCeEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 707 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~V~Iw 707 (918)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998776 677777644 37888887 88887 5555455 9999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEEEE-E
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 782 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~-~ 782 (918)
|+.........+..|...|.+++|+|++.. +++++. |+.+++|++..+..+..+.+ .+.++.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 998645677888899999999999999874 446664 99999999998777777764 56788899888745554 7
Q ss_pred cCCeEEEEECCCceEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888876 44899999888888888 999999987644 23333566889999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-ecCCcEEEeC
Q 002471 861 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 918 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~~-~~--~~h~~~V~~la~spdg~~Lasg-s~Dg~I~IWd 918 (918)
+..+++++.|+.+.+||+...... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888999999988999999888766 33 3788889999994332455555 6888898885
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2.3e-18 Score=188.42 Aligned_cols=136 Identities=23% Similarity=0.409 Sum_probs=110.4
Q ss_pred EcCCeEEEEECCCce-E----EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----cceEEEeccCCC
Q 002471 782 AAENVVSILDAETQA-C----RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGN 850 (918)
Q Consensus 782 ~~dg~I~i~D~~t~~-~----~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~----~~~i~~~~~~~~ 850 (918)
+..|.|.||+++..- . +-.+ -....|+.+.|+| |...|+++++| .|++|.+..+.. ......+..|..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 345677777776531 1 1111 1346799999999 56689999988 999999976532 345567888999
Q ss_pred ceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 KFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~i~~i~~sp~-g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|+.+.|||- ...|++++.|-+|++||+.+.+.. .+.+|.+.|..++|+|+|+.+|+.+.||+|+||+
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999994 467888999999999999999877 8999999999999999999999999999999985
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=180.42 Aligned_cols=281 Identities=18% Similarity=0.208 Sum_probs=202.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
.+...+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45678889999999999998875 8999999999999999999999998 67888999998887 578889999999999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-cEEEEEcCC-----------CeeeEEee-------cCceE
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSINN-----------GSCTRVFK-------GGTAQ 768 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~I~iwdl~~-----------~~~~~~~~-------~~~~~ 768 (918)
++.. ... ...|.-.++++-|++.. +...+... ..-+|+-+. ...+...+ +.+.+
T Consensus 83 ~ia~-s~~---i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAY-SAF---ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccC-cce---EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9985 222 22344555666665431 11211111 111121111 11111111 12233
Q ss_pred EEEecC-CC--EEEEEEcCCeEEEEECCCc----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 769 MRFQPH-LG--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 769 v~~sp~-~~--~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
..+... +. .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+....=++++.+ .+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 332222 22 3445566899999999997 3344455789999999999866555666666 88888886
Q ss_pred CCC-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 835 SGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 835 s~~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
... ....-.++......+..+.+-||++.+++++.|+.|+||..++...+ .+.-|.+.|++++|+|+..++|+++.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 431 11222233333556888899999999999999999999999999988 7888999999999999999999999999
Q ss_pred cEEEeC
Q 002471 913 FVKLWK 918 (918)
Q Consensus 913 ~I~IWd 918 (918)
.|.+||
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999997
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=2.2e-18 Score=181.35 Aligned_cols=295 Identities=20% Similarity=0.290 Sum_probs=206.0
Q ss_pred ccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC--
Q 002471 591 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-- 668 (918)
Q Consensus 591 ~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-- 668 (918)
.++.++.|.++..|.-.-+..... ..+.+....|..|...|++|.|+|+|.+||+|+.+|.|.+|...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 445666777777773322111100 03667788899999999999999999999999999999999755
Q ss_pred ------C--------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC
Q 002471 669 ------T--------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 669 ------~--------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 734 (918)
+ ....+.+.+|...|..++|++++.++++++.|..+++||+.. +.....+.+|...|..++|.|.
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchh
Confidence 2 345567789999999999999999999999999999999998 7888999999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce-EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 735 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 735 ~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
+. +|++-+.|...+.+.+.....+......+. ...+... .....++|--++.+ .-.+.++|
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTlk---------sFFrRlsf 238 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETLK---------SFFRRLSF 238 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC--------CcceeeeeecCchh---------hhhhhccc
Confidence 65 455888888788777765554433321000 0000110 11233333333221 33567789
Q ss_pred cCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-----------------CCCEEEE
Q 002471 814 DPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLV 866 (918)
Q Consensus 814 spdg~~Las~s~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp-----------------~g~~l~s 866 (918)
+|||.+|++...- ..++|+-.. ....+..+.+-......+.|+| -.+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 9999988765421 234554332 2234444444444444444433 1234566
Q ss_pred EEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 867 IGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 867 ~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
....+.|+|||..+.+.+ .-.-|-..|++++|++||.+|+..+.||...+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 667789999999998877 34468999999999999999999999997643
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=3.8e-20 Score=208.23 Aligned_cols=275 Identities=21% Similarity=0.373 Sum_probs=216.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
..+.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|++++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-----ee--cCceEEEEecCCCEEE
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 779 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-----~~--~~~~~v~~sp~~~~ll 779 (918)
|.+.+ +.++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+.. +. .-+..+-|...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88899999999999999999863 778899999999982211111 11 1233455666677788
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
+++.|+.-..|...... .+...+.-+.++.+- .+.++.-.+ .+++|++.++ ..++.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 88888887777654321 122222222333232 355555566 8999999877 566777788899999999
Q ss_pred eCCCCEE-EEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 858 HPTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 858 sp~g~~l-~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
||-...+ ..++.||.+.|||+-.+..+ ...+ .+.+...+|+++|..++...+-|.+.|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 9977654 56788999999999998877 2334 5567778999999988877777777764
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.5e-18 Score=181.73 Aligned_cols=234 Identities=16% Similarity=0.341 Sum_probs=180.6
Q ss_pred eEEEEECC-------CCCEEEEEeCCCeEEEEeCCCCC--ceeEE------------------eccCCCCeeEEEEcCCC
Q 002471 683 ITDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLRT------------------FMGHSASVMSLDFHPNK 735 (918)
Q Consensus 683 V~~l~fsp-------dg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~------------------~~~h~~~V~sl~fsp~~ 735 (918)
-.|+.|.. .|+++|.|+.|..|.|||++--. .+... -.+|+..|.+|.|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 36799999999999999986311 11111 22699999999999998
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEE
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV 811 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si 811 (918)
.++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 9999999999999999999999988875 4678899999875 56778889999999999532222222245779999
Q ss_pred EEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 812 CWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 812 ~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
+|.+... .++++.+| +|+-+|+|... +++..+..|...|.+++++...+ .+++++.|+.|++|++..........
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 9999776 55566666 99999999754 88999999999999999988654 57788899999999987655443333
Q ss_pred cC---CCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 002471 889 HE---GLIAALAVSTETG-YVASASHDKFVKLWK 918 (918)
Q Consensus 889 h~---~~V~~la~spdg~-~Lasgs~Dg~I~IWd 918 (918)
|. +...|+++.|+-. +++.|+..+.++|||
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEee
Confidence 33 3466777777654 577788888899997
No 166
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=191.88 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=228.0
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCe
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 703 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~ 703 (918)
.+.....|..|.+.|..|.|...|..|++|+.|..|.+||+..+..+..+. +|...|.-..|-| +...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 456677899999999999999999999999999999999999888777765 7999999999988 4567999999999
Q ss_pred EEEEeCCCCCce--eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---------cCceEEEEe
Q 002471 704 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQ 772 (918)
Q Consensus 704 V~Iwdl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---------~~~~~v~~s 772 (918)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.+.....+. .....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999988764544 345667999999999999999999999999999999998875433321 133557777
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCceEE------EEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002471 773 PHLG-RYLAAAAENVVSILDAETQACR------LSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 838 (918)
Q Consensus 773 p~~~-~ll~~~~dg~I~i~D~~t~~~~------~~l~------~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~ 838 (918)
|... .+++++.|-.+++||.+..... ..+. .....|++++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8775 6777888999999998753221 2221 2344699999997665 66666666999995433211
Q ss_pred --c-------ceEE-EeccCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002471 839 --G-------ECVH-ELSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 904 (918)
Q Consensus 839 --~-------~~i~-~~~~~~~~--i~~i~-~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~ 904 (918)
. ..++ .+++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+....|+||.=+|--.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 1122 25666543 55554 6788899999999999999999999988 55666669999999999999
Q ss_pred EEEEecCCcEEEe
Q 002471 905 VASASHDKFVKLW 917 (918)
Q Consensus 905 Lasgs~Dg~I~IW 917 (918)
||+++-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.7e-18 Score=182.67 Aligned_cols=258 Identities=14% Similarity=0.210 Sum_probs=194.4
Q ss_pred EeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCC--ce-eEEeccCCCCeeEE
Q 002471 656 GGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPG--YS-LRTFMGHSASVMSL 729 (918)
Q Consensus 656 gs~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~-Lasgs~Dg~V~Iwdl~~~~--~~-~~~~~~h~~~V~sl 729 (918)
++...+++|||+...+....+-.| .-.|..++|.....+ +++.+.|+.|++|.-.... .+ ++...+. .-.|+
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv 85 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCV 85 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHH
Confidence 334458999998866555554433 234999999886642 2334568999999765421 11 2222222 33333
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC-C
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-T 805 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-~ 805 (918)
+..... .++++|+..++|+|||++...+.+.++++ +.++.+...+.++++++..|.|.|..+.++....+|... .
T Consensus 86 ~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 86 ACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred hhhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence 333332 46679999999999999977777777664 567888888899999999999999999998877777644 4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002471 806 KPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 806 ~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~vwd~~~~~ 882 (918)
..|+-+.|++..+ +|.+++++ .|.+||+.... ........|..+...|+|+|... .|++.+.|+.|.+||+...+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 4577899999887 56667777 99999997542 34555677889999999999764 56778999999999999888
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 883 TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.......+.+...++|.++|.+|+.|+..|.|..||
T Consensus 243 s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 243 STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 776667778899999999999999999999999987
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.1e-17 Score=168.64 Aligned_cols=248 Identities=22% Similarity=0.323 Sum_probs=177.2
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCC-------CcEEEEECCC---------CceeeEec-cCCCCeEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT---------LKSKTNLE-EHSSLITDVRF 688 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~D-------g~V~iwd~~~---------~~~~~~l~-~h~~~V~~l~f 688 (918)
+.-..+.|..|.+.|+.|+-+| |.++|+|+..+ ..+.||.+.. .+++..+. .+-+.|.||.|
T Consensus 52 s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 52 SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE
Confidence 3334556788999999999999 55666666542 3578998753 33444554 56678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCceeEEec-----cCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.|++..|++-. |..|.+|++....+.+..+. .+....++-+|+|. ..+.+ ....|+++..||+++.++...+
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcch
Confidence 99999998876 88899999987544332222 23445556666662 22233 2233566666666654433222
Q ss_pred ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcc
Q 002471 763 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGE 840 (918)
Q Consensus 763 ~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~ 840 (918)
. ..|...|+.+.|+|+.. +|++|++| .|+|||.+.. ..
T Consensus 210 ~--------------------------------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~ 249 (370)
T KOG1007|consen 210 E--------------------------------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KF 249 (370)
T ss_pred h--------------------------------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Cc
Confidence 1 34778899999999877 77888888 9999999865 36
Q ss_pred eEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC------------------------------CcEEEEccc
Q 002471 841 CVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------------------------NKTMTLTAH 889 (918)
Q Consensus 841 ~i~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~------------------------------~~~~~~~~h 889 (918)
.+.++..|...|+++.|+|.. ..|++++.|..|.+|.... |.+.++..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 788999999999999999965 5678889999999996532 112256679
Q ss_pred CCCeEEEEEeCCCC-EEEEEecCCcEEE
Q 002471 890 EGLIAALAVSTETG-YVASASHDKFVKL 916 (918)
Q Consensus 890 ~~~V~~la~spdg~-~Lasgs~Dg~I~I 916 (918)
++.|++++|+.-.. +||+-+.||+|.|
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999987655 5778899999876
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.6e-17 Score=165.88 Aligned_cols=218 Identities=23% Similarity=0.381 Sum_probs=162.7
Q ss_pred cceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECC---------CCceeeEeccCCCCeEEEEECCC--CC
Q 002471 627 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSPS--MP 693 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~---------~~~~~~~l~~h~~~V~~l~fspd--g~ 693 (918)
+|......+.|.+.|..|.|.+ -|..+|+++.|++|.||.-. ......++......|++|.|.|. |-
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence 7888889999999999999976 68999999999999999751 22345667778889999999994 77
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeE------------EeccCCCCeeEEEEcCCC--CeEEEEEeCC-----CcEEEEEcC
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLR------------TFMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSIN 754 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~------------~~~~h~~~V~sl~fsp~~--~~ll~sgs~D-----g~I~iwdl~ 754 (918)
.||+++.||+||||+.-+...... ....+.....|+.|++.. ..+|+.|+.+ +.++||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 899999999999999876432211 111355667777777542 2345455433 244444332
Q ss_pred CCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEE
Q 002471 755 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRV 830 (918)
Q Consensus 755 ~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd----g~~Las~s~d~I~i 830 (918)
.. .+....+.++.+|..+|+.|+|.|+ ..+|++++.|.|+|
T Consensus 208 e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I 252 (361)
T KOG2445|consen 208 EN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRI 252 (361)
T ss_pred CC-----------------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEE
Confidence 21 1112334556789999999999994 34788888889999
Q ss_pred EECCCC-----------------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 831 WTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 831 wdl~s~-----------------~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
|.++.. -..+.+..+..|.+.|..+.|.-.|..|.+.|.||+|++|...
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 998731 1234567788999999999999999999999999999999754
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=175.52 Aligned_cols=267 Identities=16% Similarity=0.291 Sum_probs=188.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCCce-eEEeccCC-CCe
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 726 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~-~~V 726 (918)
..+|++...|.|+|||..++..+..|+++...+..++|.. ....+.+|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999987 4568999999999999999975443 33445555 345
Q ss_pred eEEEEcCCCCeEEEEEeC----CCcEEEEEcCCCee-eEEe----ecCceEEEEecCCC-EEEEEEcCCeEEEEECCCce
Q 002471 727 MSLDFHPNKDDLICSCDG----DGEIRYWSINNGSC-TRVF----KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 796 (918)
Q Consensus 727 ~sl~fsp~~~~ll~sgs~----Dg~I~iwdl~~~~~-~~~~----~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~ 796 (918)
.|++..-. ..++++|.. |-.|.+||++.... ++.+ ...+++++|+|... .+++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 55555433 457766543 67899999998765 4443 45789999999874 56677789999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEec---------cCCCceEEEEEeCCCC
Q 002471 797 ---CRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---------CNGNKFHSCVFHPTYP 862 (918)
Q Consensus 797 ---~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~---------~~~~~i~~i~~sp~g~ 862 (918)
.+...-.|...|.++.|..++. .|.+-+.. +..+|+++.+.....+..-. .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2223334778899999998872 45555555 99999998774221111000 0011222223333445
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 863 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 863 ~l~s~s~-dg~I~vwd~~---~~~~~----~~~-~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+++++. .++..++-+. ++... .+. +|...|+++.|.-.+.++.||++||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 5555555433 33222 344 4788899999999999999999999999996
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=6.3e-17 Score=186.71 Aligned_cols=280 Identities=15% Similarity=0.219 Sum_probs=208.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
....-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+-. |..+|++|+.||.||||+-..
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345677889998889999987889999999999988888754 45789998876 556899999999999997543
Q ss_pred CC----ceeEEecc-------CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce----EEEE-ecCC
Q 002471 712 PG----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRF-QPHL 775 (918)
Q Consensus 712 ~~----~~~~~~~~-------h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~----~v~~-sp~~ 775 (918)
.. +.+..+.+ ..+.=.-++|.-..++|+++| +-..|+|||.....++..+..+.. .+.. ...+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 22 22222221 111113367877777777555 478999999999888877754332 2222 2346
Q ss_pred CEEEEEEcCCeEEEEECCCce---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 776 GRYLAAAAENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~~--V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+.+++|..||.|++||.+... .+...+.|... |..+.+-+.|- .|++|+.+ .|++||++.......+......
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 788899999999999998753 46666778877 99999998776 48888888 9999999985222222222211
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 849 --GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 849 --~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~-------h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++..+++..|+..+.+++|+. +.|+||++.......++. ..+.+.|++|+|..-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999999999888 999999998776553333 345789999999999999999999999983
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=2.5e-16 Score=175.88 Aligned_cols=263 Identities=12% Similarity=0.195 Sum_probs=181.9
Q ss_pred EEEEeCCCcEEEEECCC-Cc--eeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCce--eEEeccCCCCe
Q 002471 653 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 726 (918)
Q Consensus 653 Latgs~Dg~V~iwd~~~-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~--~~~~~~h~~~V 726 (918)
+++...|+.|++||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 34446789999999963 33 444454 3456788999999999877754 888999999742322 2222 233456
Q ss_pred eEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEeec--CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEE
Q 002471 727 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 799 (918)
Q Consensus 727 ~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~ 799 (918)
..|+|+|+++.++++...++.|.+|++.+. +.+..+.+ +...+.++|++++++++.. ++.|.+||+++...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999888877777999999999743 22233322 3466789999998877665 6899999998633221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeccC------CCceEEEEEeCCCCE
Q 002471 800 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 863 (918)
Q Consensus 800 -------~l~~h~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~-~~~~~i~~~~~~------~~~i~~i~~sp~g~~ 863 (918)
.+. .......+.|+|+|++|+++.. + +|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 2344678999999999988876 3 9999999742 122333333221 112346889999999
Q ss_pred EEEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEec-CCcEEEeC
Q 002471 864 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 918 (918)
Q Consensus 864 l~s~s~-dg~I~vwd~~~~~-~~~~~~h---~~~V~~la~spdg~~Lasgs~-Dg~I~IWd 918 (918)
++++.. ++.|.+|++.... ...+.++ ....+.++|+|+|++|++++. +++|.||+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999865 6799999986543 2222222 235668999999999998775 89999984
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=2.9e-17 Score=165.70 Aligned_cols=216 Identities=21% Similarity=0.346 Sum_probs=168.8
Q ss_pred cCccceeeeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce-eeEec-----cCCCCeEEEEECC--CCCE
Q 002471 624 QGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPR 694 (918)
Q Consensus 624 ~~~s~~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~-~~~l~-----~h~~~V~~l~fsp--dg~~ 694 (918)
...+++.+..|. .+-+.|.||.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+| +++.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 344677888887 6778999999999999998876 88999999986655 33332 3566788889999 7777
Q ss_pred EEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecC
Q 002471 695 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPH 774 (918)
Q Consensus 695 Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~ 774 (918)
+++.+ |+++..||+++..+....-..|...|.++.|+|+..++|++|++||.|+|||.+.-+
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----------------- 248 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----------------- 248 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----------------
Confidence 77766 889999999986655566668999999999999999999999999999999988543
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC---------------
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS--------------- 837 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~--------------- 837 (918)
.++.++.+|...|.+|.|+|... +|++++.| .|.+|...+-.
T Consensus 249 ---------------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 249 ---------------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred ---------------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence 34556677888899999998655 77788888 88888654321
Q ss_pred ------C-----cceEEEeccCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECC
Q 002471 838 ------E-----GECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMS 879 (918)
Q Consensus 838 ------~-----~~~i~~~~~~~~~i~~i~~sp~g~~l~-s~s~dg~I~vwd~~ 879 (918)
+ ...+..+..|+..|++++|+...++++ +-+.||.|.|=.+.
T Consensus 308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 123446778899999999999888755 55778888776654
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4.6e-17 Score=170.55 Aligned_cols=210 Identities=16% Similarity=0.295 Sum_probs=174.5
Q ss_pred eeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 673 KTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
.-.+.+|.+.|.+++|+| +...||+||+|.+|.||.+...+ .++..+.+|...|--+.|+|.-.++|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999 66789999999999999997533 45788999999999999999988999999999
Q ss_pred CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEE
Q 002471 746 GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLAS 822 (918)
Q Consensus 746 g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las 822 (918)
.+|.+||+.+++.+-.+. .-+.++.|+.+|..+++++.|..|+|||.++++.+.+-.+|.+. -..+.|..+|.++.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999998777665 34677899999999999999999999999999999988778653 445668888986666
Q ss_pred EeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcE
Q 002471 823 VSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 883 (918)
Q Consensus 823 ~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~vwd~~~~~~ 883 (918)
|... .+-+||-...++...+.++.. .+.|.---|.+|...|+.++ .|+.|+.|.+.....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6533 699999988777766666665 45566667888888877665 578999999987763
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=8.4e-16 Score=171.62 Aligned_cols=249 Identities=14% Similarity=0.175 Sum_probs=175.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECC-CCce--eeEeccCCCCeEEEEECCCCCEEEEEeC-C
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF-D 701 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~-~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~-D 701 (918)
.++.+..+.. .+....++++|++++|++++ .++.|.+|+++ +++. +.... .......++|+|++++|++++. +
T Consensus 24 ~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 24 ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence 4455666653 46678899999999987765 47899999987 3332 22222 3345778999999999988875 8
Q ss_pred CeEEEEeCCCCCce---eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-------Ee--ecCceEE
Q 002471 702 KTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-------VF--KGGTAQM 769 (918)
Q Consensus 702 g~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-------~~--~~~~~~v 769 (918)
+.|.+|++++.+.. +..+. +...+.+++|+|+++.++++...++.|++||+++...+. .. ..+...+
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred CeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 89999999753322 22222 334467789999999888888888999999998643221 11 1234678
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC--c--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|++++|+++... .|.+|++...
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 99999999988876 89999999873 3 333333221 1223468899999988888654 8999999654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 002471 837 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 879 (918)
Q Consensus 837 ~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~vwd~~ 879 (918)
. ..+.+..... ......+.++|+|++|+++.. +++|.+|++.
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3 2233333332 234567899999999998886 7899999874
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=1.9e-17 Score=169.94 Aligned_cols=240 Identities=20% Similarity=0.327 Sum_probs=180.7
Q ss_pred cCCCCeEEEEEccCC----CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q 002471 636 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 636 ~H~~~V~~l~fspdg----~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~ 710 (918)
.|....+.|+|+-|. .+||+|+.-|.|+|.|+.++++...+.+|...|+.|.|+|+. .+|+++|.|..||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 466677788887643 489999999999999999999999999999999999999964 688999999999999999
Q ss_pred CCCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---------------ec--------
Q 002471 711 NPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---------------KG-------- 764 (918)
Q Consensus 711 ~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---------------~~-------- 764 (918)
+ ..++..|- +|.+.|.++.|+.++. .|++|+.|..|++|++...+....+ ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 77777664 6999999999999988 4559999999999999843211111 00
Q ss_pred --------CceEEEEecCCCEEEEEEcCCeEEEEECC-Cce-------------EEEEecCCCCCeEEE--EEcCCCCEE
Q 002471 765 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 820 (918)
Q Consensus 765 --------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~-------------~~~~l~~h~~~V~si--~~spdg~~L 820 (918)
.+.|+.| -++++++-+.++.|..|... -.+ .+.++.-....|.-| +|++-.++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0011111 13567777889999999762 111 222333333344444 556677899
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEE-eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 821 ASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 821 as~s~d-~I~iwdl~s~~~~~~i~~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
|.|... .|.+||++..+...+... .......|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 999999998765433222 22335678999999999999999999999999864
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-16 Score=183.22 Aligned_cols=292 Identities=18% Similarity=0.224 Sum_probs=208.7
Q ss_pred cceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCC-------CceeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~-------~~~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
....+..+..|...|..++.+++. .+|++||.||+|+|||+.. .+...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 556888899999999999998755 9999999999999999763 23334444467889999999999999999
Q ss_pred eCCCeEEEEeCCCCCc------eeEEeccC-CCCe-eEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeeEEee-----c
Q 002471 699 SFDKTVRVWDADNPGY------SLRTFMGH-SASV-MSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G 764 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~------~~~~~~~h-~~~V-~sl~fsp~~~-~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~ 764 (918)
+.||.|++.+++.... ..+....+ .+.| ..-+|..... .+++.+...+.|..||++.......++ |
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999975111 11222222 2233 3334443333 366677888999999999876555443 4
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS 837 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~~V~si~~spdg---~~Las~s~-d--~I~iwdl~s~~ 837 (918)
-+++++.+|.+.+++.|...|.+.+||++-+.++.... .+..+|+.++.+|-. ...++++. . .|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 57889999999999999999999999999888877665 255778888877733 35555544 3 89999999873
Q ss_pred CcceEEEe----------c------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----------------
Q 002471 838 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------------- 884 (918)
Q Consensus 838 ~~~~i~~~----------~------~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~----------------- 884 (918)
....+..- . .+......+++...+..+++|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 22222111 0 11112334455566778999999999999997542111
Q ss_pred ----------------------------------------EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 885 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 ----------------------------------------~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
.-..|...|+++++... -.+|++++.||.|+||+
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00116677888877543 45899999999999996
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=8.8e-18 Score=183.54 Aligned_cols=241 Identities=22% Similarity=0.297 Sum_probs=177.8
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
..++..|...|+.+.|.+-...|++++.||+|.+|++.. .-+++.+|.+|.++|.|+++.+++..++ +|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccC
Confidence 346778999999999999999999999999999999932 1256789999999999999999877655 99999
Q ss_pred CcEEEEEcCCC----------eeeEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--CCCCeEE
Q 002471 746 GEIRYWSINNG----------SCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDS 810 (918)
Q Consensus 746 g~I~iwdl~~~----------~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~s 810 (918)
|+|+.|++... .....+.++ +..+.++....+|+.++.||+|++|+...... .++.. ..+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999966521 112233333 34567888888999999999999999876655 22222 1222344
Q ss_pred EEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEecc-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 811 VCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 811 i~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
+.|......+...+.. .--++++... ..+..+.. ....+..+.++|...+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 4444322111111111 2223333322 12222211 1234778899999999999999999999999999
Q ss_pred cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++ ...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 988 8889999999999999999999999999999996
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.3e-16 Score=161.16 Aligned_cols=239 Identities=20% Similarity=0.371 Sum_probs=178.2
Q ss_pred ecCCCCeEEEEEccCC-----CEEEEEeCCCcEEEEECCCCceee----Ee-----ccCCCCeEEEEECC-CCCEEEEEe
Q 002471 635 RASTSKVICCHFSSDG-----KLLATGGHDKKAVLWHTDTLKSKT----NL-----EEHSSLITDVRFSP-SMPRLATSS 699 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg-----~~Latgs~Dg~V~iwd~~~~~~~~----~l-----~~h~~~V~~l~fsp-dg~~Lasgs 699 (918)
..|.-+++.+-|.|+. .+|||++ ..+|||.+...+... .+ ..+..++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688899999999976 3666654 479999987422111 11 24678899999988 677899999
Q ss_pred CCCeEEEEeCCCC--CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-ec-----CceEEEE
Q 002471 700 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 771 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~-----~~~~v~~ 771 (918)
-|-+..|||++++ +.....+..|...|..|+|...+..+|++++.||.||+||++..+.-..+ +. ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 23456778899999999999998999999999999999999987544333 22 2345677
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCC---cceEE
Q 002471 772 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSE---GECVH 843 (918)
Q Consensus 772 sp~~~~ll~~-~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~---~~~i~ 843 (918)
++.+.++++. .. ...|.|.|++.. .++.++.+|...|+.|+|.|... .|+++++| .+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7766555543 33 458999999976 67889999999999999999554 89999999 899999975422 12222
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
.+. .+..|..+.|++...--+..+.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 46789999999755444444445555443
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=161.42 Aligned_cols=231 Identities=19% Similarity=0.315 Sum_probs=181.1
Q ss_pred CCCeEEEEEc-------cCCCEEEEEeCCCcEEEEECCCCceeeEecc--CC---CCeEEEEECCCCCEEEEEeCCCeEE
Q 002471 638 TSKVICCHFS-------SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HS---SLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 638 ~~~V~~l~fs-------pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~---~~V~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
...|+..+|- |+..++|+.+.|.-|.+||.-+++....+++ |- ....+|+|+|||..|++|- ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3457777775 5778999999999999999999998888774 33 3457899999999998765 67899
Q ss_pred EEeCCCCCceeE--Eec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCC
Q 002471 706 VWDADNPGYSLR--TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL 775 (918)
Q Consensus 706 Iwdl~~~~~~~~--~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~ 775 (918)
|||+..++.... ... +..+-|.+++|+|....+++.++....+-||.-.....+..+ .++++.++|.+++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 999965453322 222 236779999999998888889999999999988887776665 4578999999999
Q ss_pred CEEEEEEc-CCeEEEEECCCc-eEEEEecCCCC-CeEE--EEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 776 GRYLAAAA-ENVVSILDAETQ-ACRLSLQGHTK-PIDS--VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 776 ~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~h~~-~V~s--i~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
++|++|+. +..|.+||++.. .++..+..|.. .--. ....|++++|++|+.+ .|++||+.+.. ..+..+..+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Cccccccccc
Confidence 99999987 789999999964 56677776655 2223 3456889999999888 99999998732 3455666677
Q ss_pred CceEEEEEeCCCCEEEEEEcCC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg 871 (918)
..+..++++|--..+++++...
T Consensus 341 d~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccccceecCcccceeeeccCce
Confidence 8899999999988777776543
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=155.49 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=172.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd 752 (918)
.|..-+|+|.+++|++|+.+|.|.|+.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 466678999999999999999999998863 2344566789999999999993 3454666 69999998
Q ss_pred cCCCee----eEE------e------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002471 753 INNGSC----TRV------F------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 816 (918)
Q Consensus 753 l~~~~~----~~~------~------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 816 (918)
.+.... .+. + -..++.+...|..+.++.++.|+.++.||+++++..+++++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 865422 100 0 124567888999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEecc-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 817 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 817 g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
..-+++|++| ++||||.++.+....+...+. .+..|.+++.+ ..++++ +....+.+|+++..++..+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC-GgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC-GGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe-cCCCceeEEeccCCCceEEEe
Confidence 5678889999 999999999854444433221 12345555554 345554 445689999999999998888
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 889 HEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 889 h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
....|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999999766 56677765555544
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.2e-16 Score=167.59 Aligned_cols=200 Identities=19% Similarity=0.315 Sum_probs=160.0
Q ss_pred eeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------ceeeEeccCCCCeEEEEECCC-CCEEEEEeCCC
Q 002471 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSFDK 702 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg 702 (918)
-.+.+|+++|..++|+| +...||+||.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35679999999999999 5579999999999999998632 457788999999999999995 55789999999
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCCCEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 778 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l 778 (918)
+|.||++.+ +..+.++. |.+-|++++|+.+|. ++++.+.|..|||||.++++.+..-.++ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 55555566 999999999999976 5669999999999999999988776432 34566777777 5
Q ss_pred EEEEc----CCeEEEEECCCceE---EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 779 LAAAA----ENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 779 l~~~~----dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
++.+. +..+.+||....+. ..++. ....|.---|++|.++|+.++.+ .||.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55443 67899998776432 22222 44567777789999987777755 8999999764
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.8e-16 Score=151.28 Aligned_cols=268 Identities=16% Similarity=0.230 Sum_probs=191.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC----------CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
..|.+-+|+|.+++|++|..+|.|.++.+.+ ...+..+.+|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3477788999999999999999999998752 12345567999999999998 34677766 59999998
Q ss_pred CCCCCcee------EE-e-----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE---EEEec
Q 002471 709 ADNPGYSL------RT-F-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQP 773 (918)
Q Consensus 709 l~~~~~~~------~~-~-----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp 773 (918)
.+...+.. +. . .-.--.|+++...|..+.+|.+ +.|+.++.||+++|+..++++++... +....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 76422210 00 0 0122458899999988877744 47999999999999999999987643 44445
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 843 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~----------~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~ 843 (918)
..+.+++|+.||+++|||.++++++..+...+ ..|.+++. +..+|++|+.-.+.+|.+++.+. .++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~-t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES-TCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc-eEEE
Confidence 66889999999999999999999988875421 23555554 46788888777999999988632 3333
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
.+ ...+..+.|..+ .+++++..+.|.-|.+..--...+.......++..|+-. -++|-.++..+++.|++
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 33 456777777544 578888888999998765444444444444455555322 34566677777787763
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=8.6e-16 Score=176.65 Aligned_cols=257 Identities=17% Similarity=0.275 Sum_probs=185.7
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCce-----eEEeccCCCCeeEEEEcC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 733 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp 733 (918)
+.+.||+++........-.-...|+|++|+| +..+||.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999986533333334567899999999 5667888889999999999875542 123346899999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeee------EE---------eecCceEEEEecCC-CEEEEEEcCCeEEEEECCCc-
Q 002471 734 NKDD-LICSCDGDGEIRYWSINNGSCT------RV---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 795 (918)
Q Consensus 734 ~~~~-ll~sgs~Dg~I~iwdl~~~~~~------~~---------~~~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~- 795 (918)
+... =|++++.||.|+.|+++.-... .. -...+..+.|.+.. ..|++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2448888999999998754321 00 01245667787765 56888888898877433222
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE-EEE
Q 002471 796 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 866 (918)
Q Consensus 796 -------~~~~~l~~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~-l~s 866 (918)
+....+..|.++|+++.++|-+. +|.++++.+|+||.... ....+..+..+...+++++|+|.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12334556889999999999777 45555533999999762 22556666666777999999998765 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 867 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 867 ~s~dg~I~vwd~~~~~~~---~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+..||.|.|||+...... ....+....+.+.|+++|++|+.|...|.|++|+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 566999999999765433 4444566777888899999999999999999985
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=178.43 Aligned_cols=237 Identities=20% Similarity=0.294 Sum_probs=166.5
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCeE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTV 704 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~V 704 (918)
+.....|.||++.|+|++|+.||.+|++|+.|-.|.|||.-..+.+..+. +|...|.|++|-| +++.|++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44567789999999999999999999999999999999988777777765 8999999999999 56789999999999
Q ss_pred EEEeCCC---------CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Eee-----------
Q 002471 705 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFK----------- 763 (918)
Q Consensus 705 ~Iwdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~----------- 763 (918)
++||+.. .....+.+..|...|..|+..|++.+.|.++++||+|+-+|++...... ...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 2344567778999999999999998999999999999999998743211 110
Q ss_pred -cCceEEEEecCCCE-EEEEEcCCeEEEEECCCceEEEEecC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEECCC
Q 002471 764 -GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQG-----HTKPIDSVC-WDPSGELLASVSEDSVRVWTVGS 835 (918)
Q Consensus 764 -~~~~~v~~sp~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~-~spdg~~Las~s~d~I~iwdl~s 835 (918)
....++.++|...+ |++|+.|-..++||.+.......-.+ ......|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~--------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ--------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc---------
Confidence 13355667776644 44455566777777543211100000 000111111 111110 0000
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 836 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 836 ~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
+ .+......++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 g-------n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 G-------NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred c-------ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 00000122456789999999999888889999999887754
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=4.8e-16 Score=171.25 Aligned_cols=237 Identities=15% Similarity=0.235 Sum_probs=175.5
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
..++++|.+.|+|++|+.||+++|+|+.|+.|.||.-. ....++ .|.+.|.|+.|+|-...|++++... .-+|..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 45688999999999999999999999999999999754 222232 5999999999999999999998643 778987
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----cCceEEEEecCCC-----EEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYL 779 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~-----~ll 779 (918)
+. + .+...+ ....|.+.+|..||.+ ++.|-.||+|.|-+....+.++.-. ..+-.++|+|..+ .+.
T Consensus 122 ~q-K-~V~K~k-ss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQ-K-SVSKHK-SSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hh-h-hHHhhh-hheeEEEeeecCCCcE-EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75 2 222211 3456888999998764 5589999999998766554444332 2456788888653 455
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+.....++.+|.+.. +.+..-+.-.-.-.|+.+.++|++++.|+.| .+++|.-+ | ..+.++.....+|+++..+
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 555566666666543 2222222223345688999999999998888 88888643 2 4555555567899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCC
Q 002471 859 PTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~vwd~~~ 880 (918)
|++.++++|+.||+|..|++-.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCceEEEEEccCeeehhhhHH
Confidence 9999999999999999998743
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=8.9e-16 Score=155.25 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=188.4
Q ss_pred eeeeeeecCCCCeEEEEEcc---CCCEEEEEeC----CCcEEEEECC--CCceeeEe-ccCCCCeEEEEECCCCC-----
Q 002471 629 KEANSVRASTSKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 693 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fsp---dg~~Latgs~----Dg~V~iwd~~--~~~~~~~l-~~h~~~V~~l~fspdg~----- 693 (918)
+++..+..+ -.++++.|+. ...+||.|+. .++|.|..++ +++.+..- ..|..+++.+-|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 445555544 3688899984 3358888873 4667776554 44443332 36889999999999763
Q ss_pred EEEEEeCCCeEEEEeCCCCCcee--------EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC
Q 002471 694 RLATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 765 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~--------~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~ 765 (918)
+|||++ -.+|+|.+......+ ..-..+..+++++.|+.-..++|.+++-|-++.|||++++..
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------- 185 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------- 185 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------
Confidence 455554 459999997422211 112246788999999998888999999999999999987621
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEE
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~ 843 (918)
+.....+-.|...|..|+|...+. +|++++.| .||+||++..+....++
T Consensus 186 -----------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 186 -----------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred -----------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 112234556999999999998665 89999988 99999999987777777
Q ss_pred EeccCCCceEEEEEeCCC-CEEEEEEcCC-eEEEEECCCCcEE--EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQ-SLELWNMSENKTM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g-~~l~s~s~dg-~I~vwd~~~~~~~--~~~~h~~~V~~la~spd-g~~Lasgs~Dg~I~IWd 918 (918)
+-.....+...++|++.. +++++...|. .|.|.|++..... ++.+|.+.|+.++|.|. ...|+||++|..+.|||
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 766667788899998855 5666666664 8999999876543 88999999999999995 45899999999999997
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=161.20 Aligned_cols=253 Identities=16% Similarity=0.205 Sum_probs=185.1
Q ss_pred cceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCceeeE--eccCC-CCeEEEEECCCCCEEEEEeC-
Q 002471 627 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHS-SLITDVRFSPSMPRLATSSF- 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~~~~~~~~--l~~h~-~~V~~l~fspdg~~Lasgs~- 700 (918)
+.+.+..+++|...++.++|.. .+..+.+|+.||+|++||++....... +..+. .+..|++....+..+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 4566777888888899999987 467899999999999999986655444 44555 56778888778888888854
Q ss_pred ---CCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----eeEEee--cCceEEE
Q 002471 701 ---DKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMR 770 (918)
Q Consensus 701 ---Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~----~~~~~~--~~~~~v~ 770 (918)
|-.|.+||++.....++ ....|.+.|++|+|+|...++|++|+.||.|.|||++... ++.++. ..+..+.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 67899999998666454 4457999999999999999999999999999999998653 223333 2356677
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCC------------CCeEEEEEcC-CCCEEEEEeCC--eEEEEEC-
Q 002471 771 FQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVSED--SVRVWTV- 833 (918)
Q Consensus 771 ~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------------~~V~si~~sp-dg~~Las~s~d--~I~iwdl- 833 (918)
|..++ +++.+.+...+..+|+++.+.+...+.... ..+... .+| +..+++.++.+ +..++-+
T Consensus 219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEee
Confidence 87765 578888999999999999887655443211 111111 223 34455555543 4444433
Q ss_pred --CCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 834 --GSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 834 --~s~~~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
.++.....+..+.+ |...|+++.|.-.+..+++||+||.+.+|....
T Consensus 298 ~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 44444455555555 556688889998999999999999999998643
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=5.9e-16 Score=167.37 Aligned_cols=260 Identities=17% Similarity=0.273 Sum_probs=189.6
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEE-CC-------CCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~f-sp-------dg~~Lasgs~Dg~V~Iw 707 (918)
.|...|.||.|+.....+.+++ |..+.+|.-.+......+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5777788999998887777665 555555543322222222222222221111 11 23478888999999988
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--eeeEEeecCceEEEEecCCCEEEEEEcCC
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~--~~~~~~~~~~~~v~~sp~~~~ll~~~~dg 785 (918)
+-. ++.-+.+..|.+.|.+-.|+|+|..++ ++++||.|++|.-... ..+..+...+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 754 556677889999999999999998877 9999999999985421 12333456789999999988777654 45
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 786 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 786 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.+.|--+.-...+...+.|++-|.++.|++..+++++|++| ..+|||--. ..+..-..|+.+|++++|.|+ +.+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 66676776666777788999999999999999999999999 999999643 556666778999999999999 444
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 865 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
++++ .+++++ .....+.|..++|++||..++.|+..|.|.+
T Consensus 242 ~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 4444 344442 2234578999999999999999998887753
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.4e-15 Score=169.76 Aligned_cols=279 Identities=17% Similarity=0.295 Sum_probs=207.7
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC----CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~----~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.|.-.++|.++||.++++|+|..||.|.||.-- .......++-|...|.+++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 467779999999999999999999999999632 2234566788999999999999999999999999999999998
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--------------cCceEEEEecCCCE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 777 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~sp~~~~ 777 (918)
++ ...+..-.++|..+.++||++.+. .+..|+.|.+....+.....++. +-...++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 54 445556778999999999987555 66679999998875544333222 12345788898888
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecC-----------CCCCeEEEEEcCCCCEEEEEe---------C-C-eEEEEECCC
Q 002471 778 YLAAAAENVVSILDAETQACRLSLQG-----------HTKPIDSVCWDPSGELLASVS---------E-D-SVRVWTVGS 835 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~~~~l~~-----------h~~~V~si~~spdg~~Las~s---------~-d-~I~iwdl~s 835 (918)
++..+..+.|.+||+-+.+.++.+.. +...|+.++.+-.|.++++.- + . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988776655431 123467777888899988864 1 1 689998765
Q ss_pred CCCcceE--EEeccCCCceEEEEE-eCCCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 002471 836 GSEGECV--HELSCNGNKFHSCVF-HPTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 900 (918)
Q Consensus 836 ~~~~~~i--~~~~~~~~~i~~i~~-sp~g~-~l~s~s~dg~I~vwd~~~~~----------~~-~~~~h~~~V~~la~sp 900 (918)
....-.+ .....|+..+...++ ++... .+++++.||.++||-+.+.+ +. .-.-|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5332222 223455555544444 44443 78999999999999883322 11 1113788999999999
Q ss_pred CCCEEEEEecCCcEEEeC
Q 002471 901 ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 901 dg~~Lasgs~Dg~I~IWd 918 (918)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99654 567888999997
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.9e-14 Score=149.15 Aligned_cols=231 Identities=16% Similarity=0.288 Sum_probs=172.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~ 715 (918)
...|..+.|..|...|..|+.|| .++|..+..............|..+-|+. .+||..+.+ +.+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc-Cce
Confidence 45677888999999999999887 67788776554333333444566666664 466666554 4589999886 333
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----ceEEEEecCC--CEEEEEEc--CCeE
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 787 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~--~~ll~~~~--dg~I 787 (918)
+..+. ....|.++.++.+ +++ ++-. ..|+|||+++.+.++++... ...+++++.. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 5678999999854 455 4443 44999999999988877532 2234455444 45555333 6899
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccC--CCceEEEEEeCCCCE
Q 002471 788 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 863 (918)
Q Consensus 788 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~--~~~i~~i~~sp~g~~ 863 (918)
.+||+.+-+.+..+..|++.+-+++|+++|.+||++++. -||||.+.++ ..+.+|+.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 6999999877 555555533 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 002471 864 LLVIGCYQSLELWNMSE 880 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~ 880 (918)
|.+.+..++|+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 192
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-14 Score=151.58 Aligned_cols=276 Identities=16% Similarity=0.258 Sum_probs=190.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++. ....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34578899999877889999999999999766 55555553 3467999999995 55788888666 999988643221
Q ss_pred -------------eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEE
Q 002471 716 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 716 -------------~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll 779 (918)
+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... .+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1222344 689999999998877755556889999999999876654 24667899999999999
Q ss_pred EEEcCCeEEEE-ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCC------------cceEEEec
Q 002471 780 AAAAENVVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE------------GECVHELS 846 (918)
Q Consensus 780 ~~~~dg~I~i~-D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~------------~~~i~~~~ 846 (918)
++..|+..++| ..++..+..-..+ .+.|...+|+|+|++|+..+.+.-++|.+....+ ...+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999999 4445444443333 3489999999999977666666444554422111 01111111
Q ss_pred ---------cCCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 002471 847 ---------CNGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 902 (918)
Q Consensus 847 ---------~~~~~i~~i~~sp~g~~l~s~s~dg--------~I~vwd~~~~~~~~~~--~--h~~~V~~la~sp---dg 902 (918)
...+++.+++|.|.|.+|++.-..+ .|.+||.+....+.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1146788999999999999986543 4777887766555332 2 111244555554 45
Q ss_pred CEEEEEecCCcEEEe
Q 002471 903 GYVASASHDKFVKLW 917 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IW 917 (918)
.+|..+=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766544
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=2.4e-15 Score=172.96 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=186.2
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce--eeE----eccCCCCeEEEEECCCCC--EEEEEeCCCeEEEE
Q 002471 637 STSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSMP--RLATSSFDKTVRVW 707 (918)
Q Consensus 637 H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~--~~~----l~~h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iw 707 (918)
-...|.|++|+| +..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+.. .|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356799999999 668889999999999999986554 222 236899999999987544 49999999999999
Q ss_pred eCCCCCceeE-----Eec------cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-----------EEeecC
Q 002471 708 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----------RVFKGG 765 (918)
Q Consensus 708 dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-----------~~~~~~ 765 (918)
+++.-..+.. ... .....+++++|.+...+.++.|+++|.|..-+....+.. ....+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8875322111 111 223468999999988888889999999987433222111 112345
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceE
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 842 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i 842 (918)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|+|... .|+++..+ .|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 6778899999888888889999999988 7788888888888899999999776 66667666 999999976533 334
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
.....+....+.+.|++.|+.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444566777888989999999999999999999643
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.8e-15 Score=163.48 Aligned_cols=229 Identities=21% Similarity=0.364 Sum_probs=162.6
Q ss_pred CCCEEEE--EeCCCcEEEEECCC-CceeeE-ec--cCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCC------ce
Q 002471 649 DGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YS 715 (918)
Q Consensus 649 dg~~Lat--gs~Dg~V~iwd~~~-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~------~~ 715 (918)
+.+++|+ ++..|.|-||++.. |+.-.. +. .....|+++.|.| |...||++++||.|+||.+..++ .+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 4455554 45678999999873 332221 11 2456799999999 78899999999999999997643 34
Q ss_pred eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 716 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 716 ~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
-..++.|...|++|.|+|--..+|++++.|-+|++||+.+.+..
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~------------------------------------ 713 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY------------------------------------ 713 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh------------------------------------
Confidence 56788999999999999987788889999999998888765432
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC--
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ-- 871 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg-- 871 (918)
..+.+|.+.|..++|+|||+.+++.+.| +|+||+-++++. .+.+-++ .+..-..|.|.-+|+++++.+.|.
T Consensus 714 ---~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 714 ---SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred ---heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 3456799999999999999999999999 999999987643 2333222 123445678888999999998875
Q ss_pred --eEEEEECCCCcE--E-EE-cccCCCeEEEEEeCCCC-EEEEEecCCcEEEeC
Q 002471 872 --SLELWNMSENKT--M-TL-TAHEGLIAALAVSTETG-YVASASHDKFVKLWK 918 (918)
Q Consensus 872 --~I~vwd~~~~~~--~-~~-~~h~~~V~~la~spdg~-~Lasgs~Dg~I~IWd 918 (918)
.|.+||..+-.. + +. ....-.+.--.+++|.. +|++|-.|..|.+|.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888764331 1 11 01111111112344444 466677788887763
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.4e-15 Score=153.71 Aligned_cols=281 Identities=15% Similarity=0.199 Sum_probs=210.0
Q ss_pred ccEEEEcCCCeeeccCCC---eeEeCCCcchhhhcccccccCCCcCceeeeeccCCCCCCCCCCcccccccCccceeeee
Q 002471 557 PLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 633 (918)
Q Consensus 557 ~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~ 633 (918)
..+.||.+|..+++++.. .||.++..-.++ +.|++..
T Consensus 60 NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------------~~KPI~~ 99 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------------TPKPIGV 99 (609)
T ss_pred ceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------------CCCCcee
Confidence 357788888888776544 677765432211 2233333
Q ss_pred ee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 634 VR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 634 l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.. .|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||++
T Consensus 100 ~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 33 4568999999999999999999999999999999887777753 34589999999999999999999999999998
Q ss_pred CCCcee--EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eE------Eeec---CceEEEEecCCCEE
Q 002471 711 NPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TR------VFKG---GTAQMRFQPHLGRY 778 (918)
Q Consensus 711 ~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~------~~~~---~~~~v~~sp~~~~l 778 (918)
.....+ ..+........++.|+|....||++.+..+.+-+||++.... +. .+.. .-..+.|++.|+.|
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 643232 223345567788999999999999999999999999986532 11 1111 12457899999999
Q ss_pred EEEEcCCeEEEEECCCceEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-------------
Q 002471 779 LAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------------- 837 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~~~~~~l~~h~-------~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~------------- 837 (918)
++.-....-.+||+-+..+...-..|. ..|.+++|..|.. +++|+++ .|++|.+....
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchh
Confidence 988887778888988755433222232 3467788876544 8899999 99999985321
Q ss_pred -------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 838 -------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 838 -------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
....+..+++|...+..+.|++....|++.+-.+.|+||.-
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 01234667889999999999999999999999999999954
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=149.44 Aligned_cols=225 Identities=16% Similarity=0.264 Sum_probs=173.5
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998763 5678899999999999999999999999999999999998
Q ss_pred CCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------eeEEeecCceEEEEecCCCEEEE
Q 002471 710 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 780 (918)
Q Consensus 710 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-------~~~~~~~~~~~v~~sp~~~~ll~ 780 (918)
..++ ++...+..+...++++.|+|.++ .|++|+.-..|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 34556667899999999999965 56689988999998877543 22344567789999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002471 781 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 781 ~~~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
|+.|+..++|.. ++ |..+.++....+.|..+.|+|+|..|+-.+.| .|.+-|...... .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999998888843 21 12333343456789999999999999999999 898888765532 1
Q ss_pred EEEeccCCCceEEEEEeCC
Q 002471 842 VHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~ 860 (918)
+.......-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222222344555555443
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7e-15 Score=169.84 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=162.5
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCc-eeEEeccCCCCeeEEEEcCC
Q 002471 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 659 Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~ 734 (918)
+..|+|||.+... ...+..|...|.+++|+|||+.|++++.+ ..|++||+.++.. .+..+.+| ..+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986544 56677788899999999999999988754 3699999986332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeeEEee--cCceEEEEecCCCEEEEEE-cCCeEEEEECC--CceEEEEecCCCCC
Q 002471 735 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AENVVSILDAE--TQACRLSLQGHTKP 807 (918)
Q Consensus 735 ~~~ll~sgs~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~-~dg~I~i~D~~--t~~~~~~l~~h~~~ 807 (918)
|..++++.+.+|.+.|| |+.++....... .......|+|++..+++++ .++.+.||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 2346789999999877766 46777777654 3322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 002471 808 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 884 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~---~~~~~~ 884 (918)
.++.|+|||++|+..+.+.+.+||+.++... .+ ... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~l--t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-VL--SST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-Ee--cCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999998888787777999876421 11 111 12356789999999999999987776654 344444
Q ss_pred EEcccCCCeEEEEEeCC
Q 002471 885 TLTAHEGLIAALAVSTE 901 (918)
Q Consensus 885 ~~~~h~~~V~~la~spd 901 (918)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788889999999984
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=4.4e-14 Score=147.83 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=171.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 757 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~ 757 (918)
...|..+.|+.+...|..|+.|| .++|..+.-+++. ........|..+-|+.. |++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999999 7888887633322 22223345666777743 55544444 459999998887
Q ss_pred eeEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC---CCCeEEEEEcCCCCEEEEEe-CC--eEE
Q 002471 758 CTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---TKPIDSVCWDPSGELLASVS-ED--SVR 829 (918)
Q Consensus 758 ~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h---~~~V~si~~spdg~~Las~s-~d--~I~ 829 (918)
.+..+. ..+.++++ +..+++++-.+. |+|||+++-+.++++... ...+..+.+++.+.+|+.-+ .+ .|.
T Consensus 80 ~ICe~~fpt~IL~Vrm--Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRM--NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEE--ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 665554 44445554 445666666555 999999999999888653 44466666666666887643 33 799
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 905 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~~--h~~~V~~la~spdg~~L 905 (918)
|||+.+. ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.+|..+ .++. ....|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999765 77788889999999999999999999999999 5799999999887 4442 24578999999999999
Q ss_pred EEEecCCcEEEeC
Q 002471 906 ASASHDKFVKLWK 918 (918)
Q Consensus 906 asgs~Dg~I~IWd 918 (918)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999986
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=5.4e-16 Score=165.67 Aligned_cols=262 Identities=18% Similarity=0.285 Sum_probs=208.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
-.-+.+.|+.+|++|+.|+..|.|..+|+.+++....+.. ...|.++.|-.+..+||++- ...++|||-. +..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEee
Confidence 3467789999999999999999999999999998888864 45699999998888888775 5679999876 566777
Q ss_pred eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 719 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
++.| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|...|+|.+|.....
T Consensus 206 lk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7655 55888999998 5788899999999999999999887775 45566778899888999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 874 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~ 874 (918)
+++..+.+|.++|.+|++.++|.|+++.+.| .|+|||++.... +..+.. ......+++|..| +++++....|.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---cceeec-CCCcccccccccc--ceeeecCCeee
Confidence 9999999999999999999999999999999 999999998743 333322 3455667777665 66677777899
Q ss_pred EE-ECCCC---cEEEEcc--cCCCeEEEEEeCCCCEEEEEecCC
Q 002471 875 LW-NMSEN---KTMTLTA--HEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 875 vw-d~~~~---~~~~~~~--h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
|| |...+ ....+.. ..+.|..+.|.|-...|..|-..|
T Consensus 358 iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 358 IWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 99 33321 1112222 345899999999777766655444
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=3.3e-13 Score=151.39 Aligned_cols=264 Identities=13% Similarity=0.127 Sum_probs=175.4
Q ss_pred EE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEE
Q 002471 652 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 730 (918)
Q Consensus 652 ~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 730 (918)
++ ++-..++.|.|.|..+.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+..+... ....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEE
Confidence 44 4555789999999999999999987655445678999999999999999999999998 6677777643 4467899
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC----------ceEEEEecCCCEEEEEEcC-CeEEEEECCCceEE-
Q 002471 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR- 798 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~----------~~~v~~sp~~~~ll~~~~d-g~I~i~D~~t~~~~- 798 (918)
+++||+++++++..++.|.++|.++.+.++.+... +..+..++....+++.-.| +.|.+.|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999988877532 2345667777777776665 88999997765433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC--------------------------------------
Q 002471 799 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE-------------------------------------- 838 (918)
Q Consensus 799 ~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~-------------------------------------- 838 (918)
..............|+|++++++++... .|-++|..++..
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2233345667889999999987776433 777777665411
Q ss_pred --------------cceEEEeccCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEEcc--cCCCeEEEEE
Q 002471 839 --------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMTLTA--HEGLIAALAV 898 (918)
Q Consensus 839 --------------~~~i~~~~~~~~~i~~i~~sp~g~~l~s~---s-~dg~I~vwd~~~~~~~~~~~--h~~~V~~la~ 898 (918)
.+.+..+...+.. .-+..||+++++++. + ..+.|.|+|..+.+.+.... ....+..+.|
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 1111222222222 345669999999998 3 34699999999998763332 2235999999
Q ss_pred eCCCCEEEEEecCC--cEEEeC
Q 002471 899 STETGYVASASHDK--FVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg--~I~IWd 918 (918)
+++|+++..+..|+ .|.|||
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEE
Confidence 99999766655543 598886
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2e-14 Score=166.00 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=158.7
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEe-CCCeE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTV 704 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V 704 (918)
...+..|...|.+.+|||||++|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 35567788899999999999999988754 3699999987753 3333333 44789999999888775 58876
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~ 783 (918)
.||.++..+..+..+..+...+.++.|+|++..+++++..+|.+.||++.... ....+........|+|++..+++++.
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMING 352 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcC
Confidence 66644322334566667777888999999999888777778888888875422 22222221145679999999888777
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 784 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
++ +.+||+.+++.......+ ...++.|+|||++|++++.+ .+.+|++.+. ....+..+..+.+.+..++|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 54 566999988765433222 34567899999999988877 6777765321 22566667777777888899875
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=158.99 Aligned_cols=278 Identities=22% Similarity=0.255 Sum_probs=199.1
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
+....-..-.||+|+++|+... +..|.||.+.++.++..+.+|...++.+.+.+.. .++++++.||+|++||...
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~- 91 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD- 91 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-
Confidence 3333334456899999888876 5699999999999999999999999999998854 3678999999999999987
Q ss_pred CceeEEeccCCCCeeEEEEcCC---CCeEEEEEeCCC------------cEEEEEcCCCeee--EEeecC--ceEEEEec
Q 002471 713 GYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDG------------EIRYWSINNGSCT--RVFKGG--TAQMRFQP 773 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg------------~I~iwdl~~~~~~--~~~~~~--~~~v~~sp 773 (918)
+..++++..+ ..|..+.+.|. ..-.+..+..|. .++-+.+.+.... ...+.. ..++.+++
T Consensus 92 ~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 92 GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 6777777643 33444444221 111111222121 1111221111000 000111 23444444
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEecc
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRLS----LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSC 847 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~~----l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-~~~~~~i~~~~~ 847 (918)
. +.+.....+..+.+|+..++..... -..|...+++.+++|++++++++..| .|.+|.--. .........+.-
T Consensus 171 ~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 171 S-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred C-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 4 5566666677888888887541111 12366678999999999999999988 999996433 333445566777
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|...|.+++|+++|.+|++||..+.+.+|.+.+++...+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 8899999999999999999999999999999999977788889999999999999999999999998864
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=156.41 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=164.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEeCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~----~~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.++...++-.|++|+..- ...++||+...+. .+....-....-+|-+| .+++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455666666777777654 3478888876321 11111111223344455 3356678888888999999876
Q ss_pred CCCceeEEec----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce--EEEEecCCCEEEEEEcC
Q 002471 711 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 711 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--~v~~sp~~~~ll~~~~d 784 (918)
. ....+.+. -....|+||.|.|.++.+|+.+-.+|.+++||.+. ..... +....+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22111111 13478999999999999998999999999999721 11111 11122233332222110
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
...+..++..+..-...|..++|+|||++||+.+.| .+||||+.+. +.+..++..-+...||+|+|||+|
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 011113333333345689999999999999999999 9999999765 455555666778999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 864 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
|++|++|.-|.||.+.+++++ .-.+|..+|..|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
No 204
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2.2e-13 Score=140.04 Aligned_cols=269 Identities=14% Similarity=0.217 Sum_probs=195.3
Q ss_pred CCeEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCcee
Q 002471 639 SKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 639 ~~V~~l~fspdg~~La-tgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~ 716 (918)
+.|.-|.|..|.-+++ ....|+.|.+|++...+-...+......+..++|+|||+.| .+...|-.|.||.+.+.. .
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e
Confidence 4567777877775544 45678899999999888888898889999999999999655 555669999999998732 2
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEe-----------------------------------CCCcEEEEEcCCCeeeEE
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCD-----------------------------------GDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs-----------------------------------~Dg~I~iwdl~~~~~~~~ 761 (918)
..+.-.+..+..++|+++|....+..- +++.+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 223333445677888888765432211 123355555433222222
Q ss_pred ee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE---------------------------------------
Q 002471 762 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--------------------------------------- 800 (918)
Q Consensus 762 ~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--------------------------------------- 800 (918)
+. .++..+.|+|.+..+.+|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 32 4677899999999999999999888865332211110
Q ss_pred ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCC
Q 002471 801 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 801 ---------------------l~------~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
++ .....+.-++|++|..++++-.+. .+-+||++..+ ++..-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 00 011235568999999999998877 68999997653 222233467
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
+|....|+|....|+++.....+++|......++......-.|..+.|.-+|..|+.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999989999999998888877777789999999999999999998864
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.1e-14 Score=164.78 Aligned_cols=266 Identities=15% Similarity=0.206 Sum_probs=187.7
Q ss_pred CCcccccccCccceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECC-----CCceeeEecc-------CCC
Q 002471 616 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD-----TLKSKTNLEE-------HSS 681 (918)
Q Consensus 616 ~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~-------h~~ 681 (918)
.+++|++.++-.+.-...-..-...|+.+.+-. |..+|++|+.||.|+||+-- +.+.+..+.+ ..+
T Consensus 1087 ~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~ 1166 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG 1166 (1387)
T ss_pred eEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC
Confidence 456677776644444433334567899999876 55799999999999999732 2233333321 122
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---e
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---C 758 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~ 758 (918)
.-.-++|.....+|+++++-..|||||++.+..+...-.+....|+++.-.-.+.++|++|..||.|++||.+... .
T Consensus 1167 ~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1167 TGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred CCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 2245677776667777777899999999985544445556667788887776667788899999999999998653 2
Q ss_pred eEEee---c--CceEEEEecCC-CEEEEEEcCCeEEEEECCCceE--EEEecCCC---CCeEEEEEcCCCCEEEEEeCCe
Q 002471 759 TRVFK---G--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC--RLSLQGHT---KPIDSVCWDPSGELLASVSEDS 827 (918)
Q Consensus 759 ~~~~~---~--~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~--~~~l~~h~---~~V~si~~spdg~~Las~s~d~ 827 (918)
+..++ . ++..+.+.+.| +.+++++.+|.|++||++.... ...+..|. +.++++..++...++|+|+...
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcce
Confidence 33332 2 25667777755 5699999999999999998422 22222232 3599999999999999999989
Q ss_pred EEEEECCCCCCcceEEE----eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 828 VRVWTVGSGSEGECVHE----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~----~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+||++... ....++. +....+.+.|++|||..-.+++|..|..|.||......
T Consensus 1327 ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999998643 2122211 11224567999999999999999999999999876543
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-14 Score=154.95 Aligned_cols=191 Identities=23% Similarity=0.287 Sum_probs=152.2
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec-
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 720 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~- 720 (918)
.+++|+.+|..|++|+.||++|||++.....+.....|...|.++.|+|||+.|++-+.| ..+||++++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999999888888889999999999999999999999999 899999998 44444333
Q ss_pred -cCCCCeeEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---e---EEe--ecCceEEEEecCCCEEEEEEcCCeE
Q 002471 721 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---T---RVF--KGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 721 -~h~~~V~sl~fsp~~---~~-ll~sgs~Dg~I~iwdl~~~~~---~---~~~--~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
.....+..+.|+-++ .. +++....-+.|+.||+...+. . ... ...+.+++++.+|++++.++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667787664 22 233334456677777654322 1 111 2367899999999999999999999
Q ss_pred EEEECCCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002471 788 SILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 834 (918)
Q Consensus 788 ~i~D~~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 834 (918)
.|++..+-+++..+ +.|...|+.+.|+||.+++++.+.+ ++.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998777655 4699999999999999999998888 77777664
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.2e-13 Score=154.74 Aligned_cols=233 Identities=14% Similarity=0.144 Sum_probs=167.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +. .+.+......+..++|+|||.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCC
Confidence 4788998875543 444556778999999999999987653 45799999986 33 222333334456789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766666 499999998876554433 35678899999988887764 3 5666677776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
+.+|+|||++|+..+.+ .|.+||+.++.. . .+.. ........|+|||++|+.++.++ .++++++..+.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999987632 2 2221 12234678999999999999876 47888997777
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002471 883 TMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spd 901 (918)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7778888999999999873
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=150.41 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=203.5
Q ss_pred cCCCCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 636 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
+|...-+.|..+|||.|| |||.+--.|++||+........-......|.-.-++.|-..++.-..|.+|-+..-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 467778899999999876 5677788999999987665554444455666666777766777777788887765432 1
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+ .-.....+++++.-.-.|+ .++....|+-++++.|..+..|. +.+.++.+++..+.+++|+.+|.|..||
T Consensus 127 hy~~--RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRT--RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeee--ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 1111 1223445577765555566 44556789999999999888775 4567788899989999999999999999
Q ss_pred CCCceEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002471 792 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 859 (918)
Q Consensus 792 ~~t~~~~~~l~~------h~~-----~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 859 (918)
.++...+.++.. |.. .|+++.|+.+|-.+++|... .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766655432 322 49999999999999999888 999999998643 2222233456788888877
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~-l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+.- .++......++|||-.+|+.+........|+.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6332 333334458999999999999777777779999999999999999988877654
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.3e-13 Score=141.88 Aligned_cols=234 Identities=17% Similarity=0.306 Sum_probs=179.7
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl 753 (918)
+..-..+|+|.+|++|...+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 44456789999999999999999999999999987643 56789999999999999999987766 9999999999999
Q ss_pred CC-Ce-----eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceE----EEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 754 NN-GS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 754 ~~-~~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
.. ++ .+..+.....++.|+|..+.|++++....|.||-.+...- .+.-+.++..|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 33 3344567789999999999999999999988887664321 22223467889999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 002471 824 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 885 (918)
Q Consensus 824 s~d-~I~iwdl-----~s~~----------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~--~~~ 885 (918)
+.| .+|||.. +... ....+.++....+.++.+.|+|.|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888864 1110 112334444567889999999999999999999999999988775 333
Q ss_pred EcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 886 LTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 886 ~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+....-+..++.|-.+.. ++.+++|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 333336667777754433 3344444
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=154.47 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=164.6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 730 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~ 730 (918)
..|+.++.||.+.|.+ +.++..+.+..|.+.|.|-.|+|||.-|+++++||.|+||.-. +....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4678888899999887 5678888899999999999999999999999999999999875 444455556778999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC
Q 002471 731 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 807 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 807 (918)
|.|+.+.++++.+ +.+.|=-+.....+-.. .+-+.++.|++..+.+++++.|-..+|||.- |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999998886655 44555444433333222 3446788999999999999999999999975 5566666779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 808 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
|++++|.|+ +.++.++.+++|+=..+ .+.|..++|++||..+++|+..|.+.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 88888888877743332 5678899999999999999998866553
No 211
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=1.8e-13 Score=144.79 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=157.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.|...+.+++|.+.|+.++|++|+.++++++.|..+++||+..|..+..+.+|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc---
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--- 783 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~--- 783 (918)
+++.... .+.... + ..+....+.+. .....++|--++.+ .-...++|+|+|..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~-~-~~m~~~~~~~~---------e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 192 FSAKLKQ-VIKRHG-L-DIMPAKAFNER---------EGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred eeeeeee-eeeeee-e-eEeeecccCCC---------CcceeeeeecCchh------hhhhhcccCCCCcEEEcccceee
Confidence 7775411 111100 0 00001111111 01112222222111 11233455566555554332
Q ss_pred -C-----CeEEEEECCC-ceEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCC
Q 002471 784 -E-----NVVSILDAET-QACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGSE 838 (918)
Q Consensus 784 -d-----g~I~i~D~~t-~~~~~~l~~h~~~V~si~~sp------------------dg~~Las~s~d~I~iwdl~s~~~ 838 (918)
+ +..++|+-.. .+++..+.+...++..+.|+| .+-.+++++.+.|+|||..+...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1 1234444332 233334444444444444433 34567888888999999987654
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
..++. ..|-..|+.++|+++|.+|++.+.||...+..++..++-
T Consensus 334 ~~~v~--nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 LAVVD--NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eEEEe--eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 44443 346788999999999999999999997777666655443
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=5.7e-12 Score=129.85 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=162.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCC------CeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------g~V~Iwdl~~~ 712 (918)
....++|+-|...+++|..+ -.+||+++..+.......+.+.+.-+..--..++|+. |+.+ ..|.|||-. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 34559999999999988755 5999999875544333333332222222222345543 3332 469999944 3
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEeec---CceEEEEecCCC-EEEEE--EcCC
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLG-RYLAA--AAEN 785 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~sp~~~-~ll~~--~~dg 785 (918)
..++..+. ...+|.+|++.++ ++++. .++.|+||... +-+.++.+.. +..-+++.|..+ .+++. -.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 66676665 6788999999865 34433 37899999987 4455555542 222333444433 33332 2358
Q ss_pred eEEEEECCCceE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEecc--CCCceEEEEEeC
Q 002471 786 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP 859 (918)
Q Consensus 786 ~I~i~D~~t~~~--~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~~sp 859 (918)
.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|||||..++ ..+.+++. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987765 47788999999999999999999999988 6999999988 44555443 245699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 002471 860 TYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~ 880 (918)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
No 213
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-12 Score=142.85 Aligned_cols=268 Identities=17% Similarity=0.272 Sum_probs=187.8
Q ss_pred CeEEEEEccCCCEEEEEe-----CC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q 002471 640 KVICCHFSSDGKLLATGG-----HD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs-----~D-----g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.++++.|||.|.+|.|=- .+ ..+.+|+++++.....+......-+++.|+.|..+.+ =-..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 799999999999998621 22 3577999998666665554333337899998875433 223567999999
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCC-CeEEEE-----EeCCCcEEEEEcCCCe------eeEEeecCceEEEEecCCCE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNK-DDLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 777 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~s-----gs~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~sp~~~~ 777 (918)
.+....... -|...|..+.++|.. ...||+ .+.-+.|+||.+.... +...|+.....+.|...+.-
T Consensus 154 ~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 873333333 357789999999873 334432 3445779999887332 22334556677888888765
Q ss_pred EEEEE-c-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE-EeCC--eEEEEECCCCCCcceE
Q 002471 778 YLAAA-A-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS-VSED--SVRVWTVGSGSEGECV 842 (918)
Q Consensus 778 ll~~~-~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las-~s~d--~I~iwdl~s~~~~~~i 842 (918)
|++.. . +.+++++++....++..+. ..++|.+++|+++++-|++ .+.- ++.|||++. ..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v 306 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPV 306 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEe
Confidence 54432 2 2378888888555555544 5789999999999984444 3333 899999964 333
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCc
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 913 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~------Dg~ 913 (918)
.. ...++-.++-|+|.|++|+.+|.+ |.|.|||+.+.+++...... .-+-+.|+|||.+|+|++. |+.
T Consensus 307 ~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 307 FD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred Ee--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 33 346778899999999999999987 59999999997777332222 2345789999999999874 778
Q ss_pred EEEeC
Q 002471 914 VKLWK 918 (918)
Q Consensus 914 I~IWd 918 (918)
|+||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 89985
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.1e-14 Score=151.68 Aligned_cols=194 Identities=23% Similarity=0.270 Sum_probs=141.4
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
.+++|+.+|..|++++.||++|||++.+ ...+..+..|...|.+|.|+||+..+ ++.+.| ..+||+++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~l-asig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFL-ASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEE-EEecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 55566777899999999999998754 577777 99999999985544332
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC---CE-EEEE-eCC-eEEEEECCCCC
Q 002471 764 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---EL-LASV-SED-SVRVWTVGSGS 837 (918)
Q Consensus 764 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg---~~-Las~-s~d-~I~iwdl~s~~ 837 (918)
.. .....+..+.|+.|+ .+ |++. ... .|+.||+....
T Consensus 225 ~~-------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PF-------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Cc-------------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 10 011223334444443 22 2221 122 45555553322
Q ss_pred Cc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 838 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 838 ~~--~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
.. ............|++++.+++|++++.|+.||.|-||+..+.+++ .-..|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11 122222233557999999999999999999999999999998887 44579999999999999999999988887
Q ss_pred EEEe
Q 002471 914 VKLW 917 (918)
Q Consensus 914 I~IW 917 (918)
+.|.
T Consensus 348 ~~v~ 351 (398)
T KOG0771|consen 348 AAVT 351 (398)
T ss_pred eeEE
Confidence 7764
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-12 Score=150.89 Aligned_cols=232 Identities=17% Similarity=0.239 Sum_probs=166.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|++||.+. .....+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 4788888754 445667778889999999999999988764 46899999986 33 344555667788899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.++. |++||+.++........ ......|+|++..++.++. + ..|+++|+.+++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878777665 77889988766543322 2456889999998887764 3 368888987765543 333345567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 879 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d------g~I~vwd~~ 879 (918)
...|+|||++|+..+.+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988876543 68888875442 122222 2346678999999998876653 268888988
Q ss_pred CCcEEEEcccCCCeEEEEEeCC
Q 002471 880 ENKTMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 880 ~~~~~~~~~h~~~V~~la~spd 901 (918)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665444 3555777777763
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=3.7e-13 Score=138.35 Aligned_cols=271 Identities=18% Similarity=0.210 Sum_probs=189.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEecc
Q 002471 643 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~ 721 (918)
-++|||+|+++|+++.- .+.|=|.++.+....+.- -+.|.-|.|..|..+++++ ..|+.|.+|++..+.. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 46899999999999855 788888887765554432 4567888999888877666 5588999999987443 344455
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--eecCceEEEEecCCCEEEEEEc----------------
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA---------------- 783 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ll~~~~---------------- 783 (918)
....+.+++|+|+|++++.+...|-.|.+|.+.+.++... -+.....++|++++.+.+..+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6678999999999999999999999999999998765433 2334455666666654443332
Q ss_pred --------------------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------
Q 002471 784 --------------------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------ 836 (918)
Q Consensus 784 --------------------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------ 836 (918)
++.+.+||.--...+..++ -.-.+..++|+|.+.+|++|+.| .+||.+--+-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 1123344432221111111 12458889999999999999999 7776442110
Q ss_pred -----------------------------------------CC----------cceEEEec------cCCCceEEEEEeC
Q 002471 837 -----------------------------------------SE----------GECVHELS------CNGNKFHSCVFHP 859 (918)
Q Consensus 837 -----------------------------------------~~----------~~~i~~~~------~~~~~i~~i~~sp 859 (918)
.. ...+..++ .....+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 00011111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 860 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 860 ~g~~l~s~s~d--g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|..++++-... +.+.+||+...++..+.....+|....|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99888776654 48999999999888777788899999999999888888777778888
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3e-13 Score=142.53 Aligned_cols=261 Identities=13% Similarity=0.189 Sum_probs=196.5
Q ss_pred cCCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCceeeEe------ccCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 002471 636 ASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw 707 (918)
.-...|..++|--|+ ..|...+.|..+..+++....+...+ ......|..++.. +..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 345678888887765 35555557777887777765544443 3455667666654 3378888889999999
Q ss_pred eCCCCC---ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEEeec------------CceEEE
Q 002471 708 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 770 (918)
Q Consensus 708 dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 770 (918)
.++.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988432 223333333 5577788888888999999999 8999999998865544322 124567
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002471 771 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 846 (918)
Q Consensus 771 ~sp~--~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 846 (918)
|.+. ...|++++.-+.|++||.+.+ +++..|..-+.+|+++...|++++|+++... .+..||++.+... ...+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccC
Confidence 7777 678999999999999999976 6777787788999999999999999999888 9999999987322 23366
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002471 847 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spd 901 (918)
+..+.|+++..+|..++++++|-|+.|+|+|+.+.+++.-.--...+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7788999999999999999999999999999999777644444555666666543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.4e-13 Score=152.42 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=165.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|++||.+. .....+..+...|.+.+|+|||+.|+.++.+ ..|++||+.+ +.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4688999864 4455566677889999999999999988753 4699999986 332 33334455566789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-CC--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+| .|++||+.+++....... ......|+|++..+++++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998875543322 2356889999998888765 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~ 882 (918)
.++|+|||++|+..+.+ .|.+||+.++.. ..+.. ......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988776432 699999977632 12221 2234567899999998887764 378889997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002471 883 TMTLTAHEGLIAALAVST 900 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~sp 900 (918)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888876
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=4.8e-11 Score=133.89 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=187.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC----CCcEEEEECCCC--c--eeeEeccCCCCeEEEEECCCCCEEEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 698 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----Dg~V~iwd~~~~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 698 (918)
++..+..+. -......+++++++++|+++.. ++.|..|++... . .+..........+.|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 455555533 3445677999999999999887 468999987753 3 333444345567789999999999999
Q ss_pred eC-CCeEEEEeCCCCCceeEE---ec----------cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002471 699 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 760 (918)
Q Consensus 699 s~-Dg~V~Iwdl~~~~~~~~~---~~----------~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 760 (918)
.. +|.|.++++...+..... +. .......++.|+|+++.++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543322 11 1234578899999999888777667899999998765 322
Q ss_pred Eee----cCceEEEEecCCCEEEEEEc-CCeEEEEECC--Cce--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002471 761 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 761 ~~~----~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~si~~spdg~~Las~s~ 825 (918)
.+. .+...+.|+|+++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24567999999998888776 6789999887 442 22222211 125778999999998888776
Q ss_pred C--eEEEEECC-CCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 002471 826 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 897 (918)
Q Consensus 826 d--~I~iwdl~-s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d-g~I~vwd~--~~~~~~~~~--~h~~~V~~la 897 (918)
+ .|.+|++. .......+..+...+...+.+.++|+|++|+++..+ +.|.+|++ .+|.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 333456666666666678999999999999998854 58888866 566655332 2344566665
Q ss_pred E
Q 002471 898 V 898 (918)
Q Consensus 898 ~ 898 (918)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6.2e-12 Score=145.07 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=146.4
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeee--EEeecCceEEEEecCCCEE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 778 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs--~Dg~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~~l 778 (918)
.|.+||.+. ...+.+..+...+.+.+|+|||..++++.. .+..|++||+.+++.. ..+.+....+.|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 233445556778999999999988876543 2457999999888543 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002471 779 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 779 l~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
+.... ++ .|++||+.+++.... ..+...+...+|+|||+.|+..+.+ .|+++|+.++.. ..+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~----~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP----QRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe----EEeecCCCC
Confidence 87643 44 599999998876543 3344567889999999988776653 455557665422 222233444
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 852 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
.....|+|+|++|+..+.++ .|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 56788999999998876543 689999998886655432 23457889999999999988765
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=1.7e-14 Score=163.18 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=185.7
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
+..+....+||.+.|+.++.+....++|+++.|..|++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 446778899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EeCCC-CC-ceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCC-CEEEEEE
Q 002471 707 WDADN-PG-YSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLAAA 782 (918)
Q Consensus 707 wdl~~-~~-~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~ll~~~ 782 (918)
||.+- .. ..-+-+. ....-+.++-|...+..++ |++.|++-..|.+....+.... ..-+..+.+. ...+++-
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccc---eEEEeccccccccceeee
Confidence 99971 10 0001111 1234566677776666555 9999999999987643322111 0001111122 3445555
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.+-.+.+|++.++...+.+.+|...+..+.++|-.. +..+++.| .+.|||+-.+...+ .+......+....|+++
T Consensus 373 ~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik---~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK---HYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce---eeecccceeeccccCCC
Confidence 677899999999999999999999999999999665 55567777 99999998774332 22233677888899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcE
Q 002471 861 YPSLLVIGCYQSLELWNMSENKT 883 (918)
Q Consensus 861 g~~l~s~s~dg~I~vwd~~~~~~ 883 (918)
|..++....-|.++|+....++.
T Consensus 450 gts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CceEecCCCCCceEEeccCCCcc
Confidence 99999988889999998766553
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=141.05 Aligned_cols=167 Identities=15% Similarity=0.238 Sum_probs=129.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEec----cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCC---------
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 713 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~--------- 713 (918)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|.++ .++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456667888888999988865432222121 2347899999999554 55666679999999774210
Q ss_pred ------------------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeecCceEEEEe
Q 002471 714 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ 772 (918)
Q Consensus 714 ------------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s 772 (918)
.++..+.--.+.|..++|+|||.+ |++.+.||.+||||..+.+++. .+.++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 011112223457899999998765 5689999999999999887654 456789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 773 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 773 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
||++++++|+.|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-12 Score=135.54 Aligned_cols=241 Identities=18% Similarity=0.351 Sum_probs=168.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccC------------CCCeEEEEECCCCC--EEEE
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 697 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h------------~~~V~~l~fspdg~--~Las 697 (918)
..+-|.+|.|..+|.+||||+.+|.|.+|.-+... ....+..| ...|..|.|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45679999999999999999999999999754222 22333333 34688999998654 5777
Q ss_pred EeCCCeEEEEeCCCCCce----------------------------------eEEe-ccCCCCeeEEEEcCCCCeEEEEE
Q 002471 698 SSFDKTVRVWDADNPGYS----------------------------------LRTF-MGHSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~~~~~----------------------------------~~~~-~~h~~~V~sl~fsp~~~~ll~sg 742 (918)
.+.|++|++|.+...+.. .+.+ ..|..-|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 788999999988642211 1111 25788899999999987766 44
Q ss_pred eCCCcEEEEEcCCCee-eEE--ee--------cCceEEEEecCC-CEEEEEEcCCeEEEEECCCceEE------EE----
Q 002471 743 DGDGEIRYWSINNGSC-TRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR------LS---- 800 (918)
Q Consensus 743 s~Dg~I~iwdl~~~~~-~~~--~~--------~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~------~~---- 800 (918)
+|-.|.+|+++--.. ... ++ .-+++..|+|.. +.++..++.|+|++.|++..... +.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 588999999874321 111 11 124556788875 56677788999999999843211 11
Q ss_pred ------ecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC------------C---ceEEEEEeC
Q 002471 801 ------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------N---KFHSCVFHP 859 (918)
Q Consensus 801 ------l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~------------~---~i~~i~~sp 859 (918)
|..-...|..+.|+++|+|+++-+.-+|+|||+.... +.+..+..|. . .-..|+|+-
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1112245788999999999998888899999996543 2333332221 1 124678999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 002471 860 TYPSLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~~~~ 881 (918)
++.++++|+..+.+++|++..|
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=1.1e-11 Score=139.04 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=163.6
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeEeccC-------CCCeEEEEECCCCCEEEEEeC-
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF- 700 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~~~~~~~~l~~h-------~~~V~~l~fspdg~~Lasgs~- 700 (918)
.+.+++... ...++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....+++.-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 444454433 468899999999999876 5899999999999999887643 346888888998886666555
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc------eEEEEecC
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT------AQMRFQPH 774 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~------~~v~~sp~ 774 (918)
.+.|.+-|......................|.|++++++++...++.|-++|.++++.+..+..+. ..--.+|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 588888888765444444444566778899999999888888888999999999998776654211 11112233
Q ss_pred CC----------EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCc
Q 002471 775 LG----------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEG 839 (918)
Q Consensus 775 ~~----------~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~---s~d--~I~iwdl~s~~~~ 839 (918)
.+ ..+.....+.+.+||....+.+.++...... ..+..+|+++++++. +.+ .|.|+|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---
Confidence 22 2223334456667888889999999876666 778889999999988 444 8999999876
Q ss_pred ceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEE
Q 002471 840 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMT 885 (918)
Q Consensus 840 ~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~ 885 (918)
+.+..+.. ....+..+.|+++|++++++..++ .|.|||..+.+++.
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 44555432 233588999999999988877654 69999999999883
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=8.3e-11 Score=131.94 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=179.5
Q ss_pred EEEEeCC----CcEEEEEC--CCCceeeEe-ccCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCC-Cc--eeEE
Q 002471 653 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 718 (918)
Q Consensus 653 Latgs~D----g~V~iwd~--~~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~V~Iwdl~~~-~~--~~~~ 718 (918)
+++|+++ +.|++|++ ++++....- .........|++++++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5666666 68999988 344432211 124455678899999999999877 579999999864 22 2223
Q ss_pred eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e-------------ecCceEEEEecCCCEEEEE
Q 002471 719 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 719 ~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~sp~~~~ll~~ 781 (918)
..........|+++|+++.++++...+|.|.++++.. +..... + ..+..++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998888877899999999987 433322 1 1234578999999998887
Q ss_pred Ec-CCeEEEEECCCce--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeccC----
Q 002471 782 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 848 (918)
Q Consensus 782 ~~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~~---- 848 (918)
.. .+.|.+|++.... . ...+. .....-+.++|+|+++++++..+. +|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 65 5689999987654 2 22222 244567899999999988887765 8999998722 122333333221
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEEEeC
Q 002471 849 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 918 (918)
Q Consensus 849 --~~~i~~i~~sp~g~~l~s~s~d-g~I~vwd~~--~~~~~---~~~~h~~~V~~la~spdg~~Lasgs-~Dg~I~IWd 918 (918)
......++++|||++|+++... +.|.+|++. ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988754 589999983 34443 2333345689999999999999887 467888874
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.1e-12 Score=145.26 Aligned_cols=233 Identities=18% Similarity=0.158 Sum_probs=157.3
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.+||.+ +.....+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+.+..|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 457777764 45555666778889999999999999887753 3599999987 333 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--cCCCeeeEEee--cCceEEEEecCCCEEEEEEc-CCe--EEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg~I~iwd--l~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.+|...||. +..+....... .......|+|++..++.++. ++. |+++++.++...... .......
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 8887888888766665 44444322221 23456789999998887665 344 444555555433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
...|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 67899999988876643 599999987632 12222 22345679999999999888665 57777885544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002471 883 TMTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spd 901 (918)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888888873
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.6e-12 Score=137.12 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=177.6
Q ss_pred CCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCCCCce-----eEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEE
Q 002471 679 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 751 (918)
Q Consensus 679 h~~~V~~l~fspdg~--~Lasgs~Dg~V~Iwdl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iw 751 (918)
....|..++|.-++. .|+.++.|..+.++++...+.. +.........|..+.... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345677777776544 3444446767777777653221 123445667777777652 3 45589999999999
Q ss_pred EcCCCe-----eeEEee-cCceEEEEecCCCEEEE-EEcC--CeEEEEECCCceEEEEecCC---------CCCeEEEEE
Q 002471 752 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW 813 (918)
Q Consensus 752 dl~~~~-----~~~~~~-~~~~~v~~sp~~~~ll~-~~~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~si~~ 813 (918)
.++.+. .+..-. .+...+.-.+....+++ |+.+ +.+.|||++..+.++.-+.- .-+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 23445566666666666 6667 78999999998777664432 235788899
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 002471 814 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 888 (918)
Q Consensus 814 spd--g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~ 888 (918)
.+. ...|++++.- .|++||.+.+. +++..+......++++...|++++|+++...+.|..||++.+++. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 6788888877 99999998654 677777777999999999999999999999999999999999988 4789
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 889 HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 889 h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..+.|++|..+|.+.+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=2.6e-12 Score=151.52 Aligned_cols=249 Identities=19% Similarity=0.271 Sum_probs=172.7
Q ss_pred EECCCCceeeEeccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCe
Q 002471 665 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 665 wd~~~~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
|+. .|..+..+..|+..|..++.+++. .++++||.||+|+||++..-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 577888999999999999998865 899999999999999987421 122344445678889999988776
Q ss_pred EEEEEeCCCcEEEEEcCCCe-------eeEEee----cCceEE-EEecC-CC-EEEEEEcCCeEEEEECCCceEEEEecC
Q 002471 738 LICSCDGDGEIRYWSINNGS-------CTRVFK----GGTAQM-RFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 803 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~-------~~~~~~----~~~~~v-~~sp~-~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~ 803 (918)
+. .++.||.|++.+++... +.+..+ +.+..+ ++... .. .++++..-+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 66899999999998632 111111 111111 12222 23 566677788999999998766665543
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec-cCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 002471 804 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIG--CYQSLE 874 (918)
Q Consensus 804 --h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-~~~~~i~~i~~sp~g~---~l~s~s--~dg~I~ 874 (918)
..+.|++++.+|.+.++++|+.. .+.+||++-+ ..+..+. .+..++..+..+|-.+ ..++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 34679999999999999999988 9999999865 3333222 2346677777666443 444444 456999
Q ss_pred EEECCCCcEE-EEcc-------------------cCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 875 LWNMSENKTM-TLTA-------------------HEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 875 vwd~~~~~~~-~~~~-------------------h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+|++.++.+. .+.. +.-....+++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988644 2211 111233344555567899999999999998
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=8.9e-12 Score=128.47 Aligned_cols=229 Identities=13% Similarity=0.204 Sum_probs=164.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee-EEeccCCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 754 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~ 754 (918)
....++|+.|...+++|.++| .|||+++.-++.. +.+....-.+..+-|- .+.+.+.|+.+ +.|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998888 9999997522211 1122112233334443 24455556544 579999977
Q ss_pred CCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--e
Q 002471 755 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--S 827 (918)
Q Consensus 755 ~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~ 827 (918)
..+++.++ ..++..+++.++ .++...++.|+||... +.+.++.+.. ....+.+++-..+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777665 457777777765 4556678899999887 4455555543 23445444444444577766655 8
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 002471 828 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 903 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~--~h~~~V~~la~spdg~ 903 (918)
|.|-|+...... .-..+..|...|.|++.+-+|..+++++..| -|+|||..+|+.+ ++. .....|.+++|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999765332 3466788999999999999999999999999 5899999999988 443 3456799999999999
Q ss_pred EEEEEecCCcEEEe
Q 002471 904 YVASASHDKFVKLW 917 (918)
Q Consensus 904 ~Lasgs~Dg~I~IW 917 (918)
+||.+|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999998
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=4.1e-12 Score=146.68 Aligned_cols=221 Identities=19% Similarity=0.249 Sum_probs=151.2
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCeEEEE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVW 707 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~V~Iw 707 (918)
..+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999887753 359999999886543 3334456778999999998874 5678887777
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeeEE-eec-CceEEEEecCCCEEEEEEc
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRV-FKG-GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl--~~~~~~~~-~~~-~~~~v~~sp~~~~ll~~~~ 783 (918)
.++..+...+.+..+...+....|+|||..+++++..+|...||.+ .+++.... +.+ ......|+|++..++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543334455666666667788999999988877666676666655 44443332 222 2345789999999888776
Q ss_pred CC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 784 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 784 dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
++ .|++||+.+++...... ......+.|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886554322 2344678999999987777654 35565663 2 22333333445566667
Q ss_pred EeC
Q 002471 857 FHP 859 (918)
Q Consensus 857 ~sp 859 (918)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 765
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.1e-13 Score=144.76 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=189.3
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I 748 (918)
......|..|.+.|..|.|+..|..|++|+.|..|.+||.......+....+|...|.-..|.|. +..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 44566788999999999999999999999999999999999866667777889999988889886 34456799999999
Q ss_pred EEEEcCCCe------eeEEeecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEe---cCCCC---CeEEEEEcC
Q 002471 749 RYWSINNGS------CTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 815 (918)
Q Consensus 749 ~iwdl~~~~------~~~~~~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~---~V~si~~sp 815 (918)
++=.+.... ++....+++..++..|+.. .|++++.|+.+.-+|++.......+ +.+.. ....|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998775432 3334566778888888774 5777888999999999987433222 22333 567889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCc---ceEEEe------ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--C-
Q 002471 816 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHEL------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--N- 881 (918)
Q Consensus 816 dg~-~Las~s~d-~I~iwdl~s~~~~---~~i~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~--~- 881 (918)
... .+++++.| .++|||.+..... ..+..+ ......|++++|+.++.-|++...|..|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 666 88888888 9999998764321 111111 12345699999999999999999999999995432 2
Q ss_pred ---------cEE--EEcccCC--CeEEEEE-eCCCCEEEEEecCCcEEEeC
Q 002471 882 ---------KTM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ---------~~~--~~~~h~~--~V~~la~-spdg~~Lasgs~Dg~I~IWd 918 (918)
..+ .+++|.. .|.++-| -|...|+++|++-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 111 3667764 5777755 68889999999999999997
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=2e-12 Score=134.11 Aligned_cols=250 Identities=17% Similarity=0.272 Sum_probs=189.1
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC-CCCceeeEec-cCCCCeEEEEECCCCCEEEEEeCCCe
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 703 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~-~~~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~ 703 (918)
+.+.....++||.+.|++...-|...-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 355677889999999999999998889999999999999963 3444433333 34578999999999999999999999
Q ss_pred EEEEeCCCC---CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEE
Q 002471 704 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRY 778 (918)
Q Consensus 704 V~Iwdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~l 778 (918)
|.-+.+... ...++.+..|...|..+.|+.... .+++++.|..+.---.+.+..+..+. .....+.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999977542 334567778999999999987755 45588888777554455554433222 22222222221 44
Q ss_pred EEEEcCCeEEEEE--CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002471 779 LAAAAENVVSILD--AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 855 (918)
Q Consensus 779 l~~~~dg~I~i~D--~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 855 (918)
+++...|.|.+.. ...-..+.++.+|...+++++|.+...+|.+|..| .|.+||+.-.. ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 5555566665544 44557788999999999999999999999999999 99999996542 4556777888888888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..-+.-+.+++++.|+.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888899999999999999864
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.8e-12 Score=139.59 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=172.1
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 678 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
.+....+.|..+|||.|| ++|.+--.|+|||+.+ ..++.-.+....|..+....++-.-+|.-..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999986 5666788999999986 2333333333444444433332222233445777766543322
Q ss_pred eeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002471 757 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 835 (918)
Q Consensus 757 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 835 (918)
.....+......++++.....+++++....|+-++++.|..+..+......+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 2222233344556666666778888889999999999999999988888999999999999999999988 999999988
Q ss_pred CCCcceEEE---eccCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 002471 836 GSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 903 (918)
Q Consensus 836 ~~~~~~i~~---~~~~~~-----~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~--~V~~la~spd--g~ 903 (918)
......+.. +..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+.+..|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 644333322 222323 38999999999999999999999999999999998777764 7888888665 34
Q ss_pred EEEEEecCCcEEEeC
Q 002471 904 YVASASHDKFVKLWK 918 (918)
Q Consensus 904 ~Lasgs~Dg~I~IWd 918 (918)
.|+|. +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 56554 456789997
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3.4e-13 Score=146.61 Aligned_cols=179 Identities=19% Similarity=0.291 Sum_probs=131.1
Q ss_pred ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEE
Q 002471 671 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 749 (918)
Q Consensus 671 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~ 749 (918)
.....+.+|.+.|+|+.|+.+|.+|++|++|-.|.|||.-..+.....-++|...|.++.|.|. ++.+|++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998644444556799999999999996 566888999999999
Q ss_pred EEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-e
Q 002471 750 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-S 827 (918)
Q Consensus 750 iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~ 827 (918)
+||+...+.-.. |. .-.+..+.+..|...|..|+..|++ ..|.++++| +
T Consensus 121 lfdl~~~~~~~~----------------------d~-------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 121 LFDLDSSKEGGM----------------------DH-------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred EEeccccccccc----------------------cc-------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999986432110 00 0011223345577888888888888 588888888 9
Q ss_pred EEEEECCCCCCcc----eE---EEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC
Q 002471 828 VRVWTVGSGSEGE----CV---HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNM 878 (918)
Q Consensus 828 I~iwdl~s~~~~~----~i---~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~ 878 (918)
|+-||++...... +. ..+...--...+|.++|.. .+|++|+.|-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999997632111 11 1111112345688888865 46788888889999994
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.5e-11 Score=142.42 Aligned_cols=221 Identities=18% Similarity=0.242 Sum_probs=153.0
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCC--e
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--T 703 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~ 703 (918)
....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+|||+.|+. .+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345566778889999999999999988744 36999999877653 33334455668899999997764 45555 5
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-ec-CceEEEEecCCCEEE
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYL 779 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~sp~~~~ll 779 (918)
|++||+.+ +. +..+..+......++|+|++..++++...+|. |+++|+.+++..+.. .+ ......|+|++..++
T Consensus 274 Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 99999986 33 44555566666789999999888877666665 677777776654432 22 234579999999988
Q ss_pred EEEcCC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCce
Q 002471 780 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 780 ~~~~dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
....++ .|.+||+.+++.. .+. +......+.|+|||++|+..+.+ .|.++++... ....+..+.+.+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~ 425 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEV 425 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCC
Confidence 876543 6999999888755 333 23345577999999977766653 5778887432 233333334555
Q ss_pred EEEEEeC
Q 002471 853 HSCVFHP 859 (918)
Q Consensus 853 ~~i~~sp 859 (918)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 5666665
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=4.5e-11 Score=130.05 Aligned_cols=288 Identities=16% Similarity=0.213 Sum_probs=201.0
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEECCCCceeeEeccCCCC--
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTLKSKTNLEEHSSL-- 682 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg---------------~V~iwd~~~~~~~~~l~~h~~~-- 682 (918)
+..+.+..+..+..++ ...|..+.|||.++||.+=+..+ .+.|||+.++..+..+..-..+
T Consensus 55 V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~ 132 (561)
T COG5354 55 VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL 132 (561)
T ss_pred eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCccc
Confidence 3333443444333332 34699999999999999966443 4999999999999999877666
Q ss_pred eE-EEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccC-CCCeeEEEEcCCCCe-EEE-----EEeCCCcEEEEEcC
Q 002471 683 IT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDD-LIC-----SCDGDGEIRYWSIN 754 (918)
Q Consensus 683 V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h-~~~V~sl~fsp~~~~-ll~-----sgs~Dg~I~iwdl~ 754 (918)
.+ -+.|+-+.+++|-. ....+.|+++ ++......+..- ...|....|+|.+++ .|| ..+.++.+++|.+.
T Consensus 133 ~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 133 GWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred ccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 55 78899888877655 3445999997 323222222111 356888889987433 222 24568899999998
Q ss_pred CCeeeEE---eecCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEE
Q 002471 755 NGSCTRV---FKGGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 820 (918)
Q Consensus 755 ~~~~~~~---~~~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~L 820 (918)
.++.+.. ++.....+.|.+.+..+++-.. +..++|+++....+.... +-.++|...+|.|.++.|
T Consensus 211 ~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F 289 (561)
T COG5354 211 KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRF 289 (561)
T ss_pred CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCce
Confidence 7765543 3456677889999888776432 357889998865554443 567899999999998866
Q ss_pred EEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeE
Q 002471 821 ASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIA 894 (918)
Q Consensus 821 as~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~ 894 (918)
++++ .. .+.++|++.. ....+ ....-..+.|+|.++++++++.|+ .|.+||......+.-.-......
T Consensus 290 ~vi~g~~pa~~s~~~lr~N----l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s 363 (561)
T COG5354 290 AVISGYMPASVSVFDLRGN----LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS 363 (561)
T ss_pred eEEecccccceeecccccc----eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce
Confidence 6555 44 8999999753 22222 244556778999999999998874 89999998776653222333445
Q ss_pred EEEEeCCCCEEEEEe------cCCcEEEeC
Q 002471 895 ALAVSTETGYVASAS------HDKFVKLWK 918 (918)
Q Consensus 895 ~la~spdg~~Lasgs------~Dg~I~IWd 918 (918)
-+.|+||+.++.+.. .|..|+|||
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEE
Confidence 678999999888764 377899996
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=3.7e-11 Score=138.77 Aligned_cols=230 Identities=20% Similarity=0.216 Sum_probs=157.2
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 736 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 736 (918)
..|.++|.+.. ....+..+...+.+.+|+|||++|+.++.+ ..|++||+.++ .. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~-~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QR-EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CE-EEeecCCCCccceEECCCCC
Confidence 46788887543 345555677789999999999999988754 47999999873 22 33334556677899999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002471 737 DLICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 809 (918)
Q Consensus 737 ~ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 809 (918)
.++++.+.++ .|++||+.++....... .......|++++..++.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776655 58999998776443332 223457899999988877653 2 6888898877643 3333456677
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002471 810 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 882 (918)
Q Consensus 810 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~ 882 (918)
.+.|+|+|++|+.++.+ .|.+||+.++.. . .+.. ........|+|++++|+..+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~---~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R---VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E---EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 88999999988877654 688899876421 1 2221 12234568999999998887765 56666765544
Q ss_pred EEEEcccCCCeEEEEE
Q 002471 883 TMTLTAHEGLIAALAV 898 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~ 898 (918)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555555544
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3.4e-11 Score=139.63 Aligned_cols=202 Identities=16% Similarity=0.215 Sum_probs=145.3
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeE--EeecCceEEEEecCCCE
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGR 777 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~ 777 (918)
..|.+||.+ +...+.+..|...|.+.+|+|||+.++++... +..|++||+.+++... .+.+......|+|++..
T Consensus 182 ~~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 368888875 44556677788899999999999887765533 4689999999886543 33455667889999998
Q ss_pred EEEEE-cCC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCC
Q 002471 778 YLAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 778 ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+++.. .++ .|++||++++... .+..+.......+|+|||+.|+..+.. .|++||+..+.. ..+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe----EEeecCCC
Confidence 87554 344 5888899887654 355566667789999999988776643 688889865422 22222344
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.+....|+|+|++|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 566788999999998877543 6889998766544333 23457789999999998776543
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=2.6e-12 Score=128.90 Aligned_cols=203 Identities=19% Similarity=0.256 Sum_probs=149.9
Q ss_pred eeeeeee-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--------------Ee-----------------
Q 002471 629 KEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NL----------------- 676 (918)
Q Consensus 629 ~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--------------~l----------------- 676 (918)
..+..++ .|...|+.+.--|. ..|.+-+.|+++.+|++.-...+. .+
T Consensus 46 r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc
Confidence 3444555 56677777777776 467777788888888765411110 00
Q ss_pred ----------------------ccCCCCeEEEEECC-CCC--EEEEEeCCCeEEEEeCCCCCc---------eeEEeccC
Q 002471 677 ----------------------EEHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY---------SLRTFMGH 722 (918)
Q Consensus 677 ----------------------~~h~~~V~~l~fsp-dg~--~Lasgs~Dg~V~Iwdl~~~~~---------~~~~~~~h 722 (918)
....+.|.|..|.. +++ +|++|-++|.|.+||+.++.+ .+.....|
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 01234466666543 333 356667799999999998422 23344579
Q ss_pred CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--e-----eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 723 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 723 ~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~--~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
..+|.++.|.+.-+.=+ +|+.+..+..|++... . .+..-..++..+++.||++.+++++.|++|+||..++.
T Consensus 205 ~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 99999999987544334 7888888999988653 1 22223356788999999999999999999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 796 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 796 ~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
.++..++-|...|.+++|+|+..++++++.| +|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999 9999986
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=3.6e-13 Score=144.34 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=182.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 760 (918)
-.-..+.|+.+|++|+.|+..|.|..+|..+ +.....+. -...|.++.|..+.. +| +......++|||-. |..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcEEe
Confidence 3456789999999999999999999999998 44444333 456788999987644 45 34457899999965 55555
Q ss_pred Eee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002471 761 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 761 ~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 837 (918)
.++ ..+..+.|.|..-.|++++..|.+...|+.+|+.+..+..-.+.+..++-+|-...+-+|..+ +|.+|...+.
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 554 356778899987777788888999999999999999998888899999999988888888877 9999998765
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
+.+..+-+|.++|.++++.++|.|+++.+.|..|+|||++....+ ++.. ......++||..| +++++....|.|
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 566777889999999999999999999999999999999987755 3333 5567788887766 334455567999
Q ss_pred eC
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 95
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.5e-11 Score=128.30 Aligned_cols=227 Identities=18% Similarity=0.254 Sum_probs=142.8
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|....
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 34456 78999999999999999985 57899999999887777656677899999999999999999999999997665
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+.+... ..+.|...+|+|+|..+|++++..-.| |.+.....-..+.+ .++....+.+-|
T Consensus 270 ~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~---------------~~~~k~~lliaD 331 (445)
T KOG2139|consen 270 SWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLR---------------PQSIKRVLLIAD 331 (445)
T ss_pred cceecceec-cCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccC---------------cccceeeeeecc
Confidence 333333333 345899999999999999888755444 43321111111110 111111222333
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC---
Q 002471 792 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP--- 859 (918)
Q Consensus 792 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp--- 859 (918)
+..-....--+--.+++.+++|+|.|++|++.-.+ .|.+||.+..........-...+..-..+.|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 32211110001124678899999999999987654 256677664422222211111112233445544
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002471 860 TYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 860 ~g~~l~s~s~dg~I~vwd~ 878 (918)
++.+|.++-..|.|.-|++
T Consensus 412 ~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCcEEEEEeccCceEeeee
Confidence 4556666666677766654
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-11 Score=130.23 Aligned_cols=267 Identities=14% Similarity=0.193 Sum_probs=182.0
Q ss_pred CeEEEEEccCCCEEEEEeC-----------CCcEEEEECCCCceeeEeccC--CCCe-EEEEECCCCCEEEEEeCCCeEE
Q 002471 640 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLI-TDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~-----------Dg~V~iwd~~~~~~~~~l~~h--~~~V-~~l~fspdg~~Lasgs~Dg~V~ 705 (918)
.|.-+.|||..+||+|-+. ...++|||+.+|...+.|... ...+ .-+.||.|++++|.-..| .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 4889999999999999653 257999999999998888762 2222 346899999999988765 499
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe-C----CCcEEEEEcCCCeeeEEee---cCceEEEEecCCCE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-G----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 777 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ 777 (918)
||+..+ -.++..-.-.-..|....|+|.+. +||--. . -..+.+..+.++..+++.. -....+.|...|.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998765 222221122335688889999854 443211 1 2456777777776665533 23345667777776
Q ss_pred EEEEEc-------C---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCcceE
Q 002471 778 YLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 842 (918)
Q Consensus 778 ll~~~~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~-s~~~~~~i 842 (918)
|++-.. . ..+.|+.++..........-...|...+|.|.|+.+++.+.. ++.+|.++ +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 665332 1 145666666654433333456788999999999966665443 79999998 44445555
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
..+. ....+.+.|+|.|.++++++- .|.+.++|..-..+. ....| ...+.+.|+|.|+|+++++.-+
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 5554 356778899999999888754 579999999853332 33333 3467889999999999998644
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=9.5e-11 Score=135.90 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=159.6
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
.|.++|.+... ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+...+|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 47777876544 45565677789999999999999887653 3689999986 332 333334445667999999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002471 738 LICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 810 (918)
Q Consensus 738 ll~sgs~Dg--~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 810 (918)
++++.+.+| .|++||+.+++...... .......|+|++..++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776666 68888999876544332 23455789999998887765 2 368888988876543222 2233446
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 883 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~ 883 (918)
..|+|||++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++..+..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988776643 588999987632 222 11 11223458999999998877653 688888876665
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002471 884 MTLTAHEGLIAALAVSTE 901 (918)
Q Consensus 884 ~~~~~h~~~V~~la~spd 901 (918)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 556566677777888763
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=6.2e-12 Score=147.18 Aligned_cols=265 Identities=16% Similarity=0.202 Sum_probs=185.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-C------CCCEEEEEeCCCeEEEEeC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-P------SMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs-p------dg~~Lasgs~Dg~V~Iwdl 709 (918)
|-+++.+..+-. +||++|. --.|.+||+..+..+..+... .++.++ . .+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~----~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS----KILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh----cccccccccccceeccceEEEEEeecceeecch
Confidence 344556666554 4666654 457999999887665544321 011111 1 2335555554443433332
Q ss_pred CCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE-------EEEecCCCEEEEEE
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAA 782 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~sp~~~~ll~~~ 782 (918)
.. .... ...+.|....+..+.. .++....+..+.+||...+...........+ +-++++.-++++++
T Consensus 79 ~~--~~~~---~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 79 SN--QIIE---RFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hh--hhhh---hccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 21 1111 2233344444444434 4456677899999999988776665543322 22344445677777
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 783 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
.-+.|.+|+.........+.+|++.|.++.|+.||++++++++| ++|+|++.+.+... ...-+|...+..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-
Confidence 78999999988544444688999999999999999999999999 99999999875444 345578899999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 862 PSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 862 ~~l~s~s~dg~I~vwd~~~~~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++++.|.+.++|+.....+..+..|. ..|+.++..++.-.++|++.||.|++|+
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 4799999999999999999999999996
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=7.1e-10 Score=121.89 Aligned_cols=256 Identities=10% Similarity=0.083 Sum_probs=169.9
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCCceeEEeccCC------
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 723 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~h~------ 723 (918)
++|.|.|.++++.+..+..-..+-. + ++||++.|++++. +..|.|||+.+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 8999999999999998885444332 4 9999998887765 78899999998 55665555322
Q ss_pred -CCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC-ceE-EE
Q 002471 724 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 799 (918)
Q Consensus 724 -~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~~-~~ 799 (918)
.....++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.+.||....+.+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999888765534 89999999999999988875443333333333333445555544433322 221 11
Q ss_pred E---ecCCCCCe-EEEEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEecc-------CCCceEEEEEeCCCCEEE
Q 002471 800 S---LQGHTKPI-DSVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 865 (918)
Q Consensus 800 ~---l~~h~~~V-~si~~sp-dg~~Las~s~d~I~iwdl~s~~~--~~~i~~~~~-------~~~~i~~i~~sp~g~~l~ 865 (918)
. +.....++ ..-.|.+ +|+++++..+++|.+.|+..... ...+..+.. ....+.-++++++++.++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 11100111 0113455 88888888888999999754321 112222111 122334489999999999
Q ss_pred EEEc----------CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 002471 866 VIGC----------YQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 918 (918)
Q Consensus 866 s~s~----------dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~-~Lasgs-~Dg~I~IWd 918 (918)
+... .+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8532 2489999999999996666677999999999999 777666 577788875
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.1e-10 Score=135.35 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=155.2
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 737 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 737 (918)
.|.++|.+... ...+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+...........|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 56777865543 34555667789999999999999877643 3 5888898863 32 222223334457899999998
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002471 738 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 810 (918)
Q Consensus 738 ll~sgs~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 810 (918)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 88889887765443322 3456889999998887765 3 36777888877654322 12233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 883 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~ 883 (918)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999987776543 466678776532 11 2211 1222457999999988876553 478888866555
Q ss_pred EEEcccCCCeEEEEEeC
Q 002471 884 MTLTAHEGLIAALAVST 900 (918)
Q Consensus 884 ~~~~~h~~~V~~la~sp 900 (918)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.4e-09 Score=115.04 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=186.0
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCC--Cceee--EeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 707 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iw 707 (918)
.+.+.++-|+|+++.++|+++-.+ |.|..|.++. |+... ........-+.|++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466789999999999999988654 7788887774 44322 22223334488999999999999987 6899999
Q ss_pred eCCCCCceeE--EeccCCCC----------eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----e--cCceEE
Q 002471 708 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 769 (918)
Q Consensus 708 dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~--~~~~~v 769 (918)
-+...+.... ....|.+. +.+..|.|+++.++++.-.-..|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9976554322 22335555 8889999998877755555578999999987654322 2 356789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCc-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 836 (918)
.|+|+++..++.++ +++|.+|..... ..+..+.. ...+.-.|.+++||++|+++..+ .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998888776 889999988763 22222211 23456788999999999998876 8888888654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEE--cccCCCeEEEEE
Q 002471 837 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNM--SENKTMTL--TAHEGLIAALAV 898 (918)
Q Consensus 837 ~-~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~--~~~~~~~~--~~h~~~V~~la~ 898 (918)
. ....+.....++..-+.+.|++++++|+++..+. .|.+|.+ .+|++..+ ........||.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 2444555555566678899999999999999875 7777755 45555422 233444556655
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=4.5e-11 Score=122.22 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 002471 804 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 877 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd 877 (918)
..++|.+++|+|+|+.|+++. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.|||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345699999999999766553 34 89999996 24555543 5677889999999999999854 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCcEEEeC
Q 002471 878 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 918 (918)
Q Consensus 878 ~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~------Dg~I~IWd 918 (918)
+++.+.+....|.. ++.++|+|+|++|+++.. |..++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 78888985
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=9.2e-10 Score=126.74 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=154.5
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEE---EEEeCCC--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL---ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 734 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~L---asgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~ 734 (918)
+.|.+.|.+.+. ...+......+.+-+|+|||+.+ ++...+| .|.+.++.++ . .+.+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-A-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-C-ceEeecCCCCccceEECCC
Confidence 356777766544 34455556667888999999753 2443444 4777788753 2 2333334555667899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeeEEeec---CceEEEEecCCCEEEEEEc-CCe--EEEEECCC-ceEEEE
Q 002471 735 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 800 (918)
Q Consensus 735 ~~~ll~sgs~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t-~~~~~~ 800 (918)
|+.++++...+| .+.+|++..+ +....... ......|+|++..++..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765444 3444777653 32333322 2356799999998887764 554 55555542 233344
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 002471 801 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 873 (918)
Q Consensus 801 l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I 873 (918)
+..+...+....|+|||+.|+..+.+ .|.+||+.+++. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 44455667889999999988766542 699999987642 2222223456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002471 874 ELWNMSENKTMTLTAHEGLIAALAVSTET 902 (918)
Q Consensus 874 ~vwd~~~~~~~~~~~h~~~V~~la~spdg 902 (918)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677788888753
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=1.2e-10 Score=119.16 Aligned_cols=148 Identities=13% Similarity=0.278 Sum_probs=110.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEeCCCCCceeEEecc-CCCCeeEEEEcCCCCeEEEE-EeCCCcEEEE
Q 002471 684 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 751 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~----------Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-gs~Dg~I~iw 751 (918)
..+.|+++|++|++-.. -+...||.++..+..+..+.- ..++|.+++|+|++..+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 234666666544444444433 34579999999999887544 4567899999
Q ss_pred EcCCCeeeEEee-cCceEEEEecCCCEEEEEEcC---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002471 752 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 825 (918)
Q Consensus 752 dl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~d---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~-- 825 (918)
|++ ++.+..+. .....+.|+|+|..+++++.+ |.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 456789999999999998753 679999999988887765 3 34789999999999988763
Q ss_pred ----C-eEEEEECC
Q 002471 826 ----D-SVRVWTVG 834 (918)
Q Consensus 826 ----d-~I~iwdl~ 834 (918)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
No 251
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.31 E-value=1.1e-12 Score=131.68 Aligned_cols=65 Identities=32% Similarity=0.761 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCcccCCCCCchhHHHHHHHHHHHHhhccc
Q 002471 5 NWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEK 70 (918)
Q Consensus 5 ~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~~~~~~fL~eWw~~fwdif~a~~~~~ 70 (918)
.-.|||.|..||||||++.++.++|+.|+.|-....+ ..+..+.+||.+|||||||+|.|.-.++
T Consensus 13 d~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRR 77 (354)
T KOG4594|consen 13 DSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERR 77 (354)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCcccc
Confidence 3468999999999999999999999999999887765 6678899999999999999998865544
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=9.2e-10 Score=121.51 Aligned_cols=246 Identities=13% Similarity=0.224 Sum_probs=167.4
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC--EEEE-----EeCCCeEEEEeCCCCC-
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPG- 713 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~V~Iwdl~~~~- 713 (918)
+++.|+.|..+.|- -..+.|.+|++...+.+ .-+-|...|+.+.++|.+. .||+ .+.-+.||||.+...+
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 78999998864443 23568999998874322 2234678899999999733 3333 2445679999886311
Q ss_pred -ce--eEEeccCCCCeeEEEEcCCCCeEEEEEeC-----------CCcEEEEEcCCCeeeEEe--ecCceEEEEecCCCE
Q 002471 714 -YS--LRTFMGHSASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 777 (918)
Q Consensus 714 -~~--~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ 777 (918)
.. .++|. ...=..+.|++.|..||+..+. +.+++++++...++...+ .+.+.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11 12221 2223347888887776654432 246888888855665555 468899999999988
Q ss_pred EEEEEc--CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002471 778 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 778 ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
|+++.. -..+.|||++. .+++.+ .+++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 776654 67999999874 444444 35677889999999988888766 6999999874 55555543 34
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 900 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~------dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp 900 (918)
.+-+.|+|||.+|++++. |+.|+||++....+.... .....+.+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeeee
Confidence 566899999999999986 578999998765544111 111566666654
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=4.3e-10 Score=130.40 Aligned_cols=219 Identities=19% Similarity=0.257 Sum_probs=143.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEE-EeCCCe--EE
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR 705 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~D-g--~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--V~ 705 (918)
..+..+...+.+..|+|||++|+..+.+ + .|++||+.+++... +..........+|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3445567788999999999999877643 2 58889998776432 2222334457899999998865 455665 77
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeeEEe-ecC-ceEEEEecCCCEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAA 781 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~--I~iwdl~~~~~~~~~-~~~-~~~v~~sp~~~~ll~~ 781 (918)
+||+.+ + .+..+..+...+...+|+|+++.+++++..++. |+++|+.+++..+.. .+. .....|+|+++.++..
T Consensus 290 ~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 778875 3 344555566667789999999988877765554 666778777654432 222 2346899999998887
Q ss_pred EcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 782 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 782 ~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
..+ + .|.++|+.+++... +... .......|+|||+.|+..+.+ .+++++.. + .....+....+.+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS 441 (448)
T ss_pred EecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence 653 3 56678888876543 2221 122345899999977665543 36777763 2 233334444455666
Q ss_pred EEEeC
Q 002471 855 CVFHP 859 (918)
Q Consensus 855 i~~sp 859 (918)
.+|+|
T Consensus 442 p~Wsp 446 (448)
T PRK04792 442 PAWSP 446 (448)
T ss_pred CccCC
Confidence 67766
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=7.3e-10 Score=127.97 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=144.3
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeeEE--eecCceEEEEecCCCE
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGR 777 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ 777 (918)
..|.++|... ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....+.|+|++..
T Consensus 170 ~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 3577888753 33455666777899999999999877665433 5799999998754433 3345567899999988
Q ss_pred EEEEEc-CC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCC
Q 002471 778 YLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 778 ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+++... ++ .|++||+.++.... +..+........|+|||+.|+.++.. .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 33 68999998875433 34444555678999999987766543 58888887653 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002471 851 KFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg 912 (918)
.+..+.|+|++++|+.++.++ .|.+||+.++....+... ......+|+|++++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 667889999999999988876 899999988766544432 2345678999999888877654
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.9e-10 Score=129.29 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=147.7
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCC--eE
Q 002471 631 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDK--TV 704 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg--~V 704 (918)
...+..+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+.. +.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34556677889999999999999877644 368999998876543 33334456678999999988754 4455 58
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEee-c-CceEEEEecCCCEEEE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 780 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~ll~ 780 (918)
++||+.+ +. ...+..+...+....|+|+++.++++...+| .|+++|+.+++...... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778887776544322 2 2334689999999888
Q ss_pred EEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceE
Q 002471 781 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 853 (918)
Q Consensus 781 ~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 853 (918)
...+ + .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 3 58889998876543222 2223356899999977766543 4677777432 2223333344555
Q ss_pred EEEEeC
Q 002471 854 SCVFHP 859 (918)
Q Consensus 854 ~i~~sp 859 (918)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 566665
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.9e-11 Score=132.76 Aligned_cols=278 Identities=18% Similarity=0.215 Sum_probs=190.3
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 630 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
....+.||...|+.++--.+.+.+++++.|++|++|.++ +..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678999999999988888899999999999999976 234667888999999999999998888765 78
Q ss_pred eEEEEeCCCCCceeE-Eec-cCCCCeeEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeeEEee--------cCceEEE
Q 002471 703 TVRVWDADNPGYSLR-TFM-GHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMR 770 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~-~~~-~h~~~V~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--------~~~~~v~ 770 (918)
-|.+||.-- +..+. ... ...+.+..|...++ ...+++.|+...+|+++|.+..+.+..++ +-+.+++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999865 33332 111 12233333433343 33355556889999999999887655543 2356788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEeccC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSCN 848 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~i-wdl~s~~~~~~i~~~~~~ 848 (918)
+.+.|++++++-..|.|.+.|.++|+.+...+.-+.....++ .|....|+....| ++.| |...++ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 999999999999999999999999998887665444443333 2455566666666 7777 876544 111111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-N------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-~------~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
..+.. -.-.-|..+++......+.||.-.. . ..++-....+..++++.-|-+.-+..|+..|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 1122456677777777888884321 1 11222345577888888887777778888898876
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=6e-10 Score=123.93 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=145.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEecc---CCCCeEEEEE------CC--------------CCCEEEEEeCCCeE
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRF------SP--------------SMPRLATSSFDKTV 704 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~---h~~~V~~l~f------sp--------------dg~~Lasgs~Dg~V 704 (918)
+-..++|....||.++|||+.+++....|.. -++..++..| +| +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4557999999999999999998887766642 2344455554 12 33467888889999
Q ss_pred EEEeCCCCCceeEEec--cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec---CceEEEEecCCCEEE
Q 002471 705 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 779 (918)
.+|++.. +.....+. +|.+.|.++.++.+-. .|.+++.|+.|.+|+...+..++.+++ ....+++++|++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 44444444 6999999999887644 567999999999999999998888875 456789999988877
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 835 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-----g~~Las~s~d--~I~iwdl~s 835 (918)
+++ +.|++||+++++.+..|.+|.++|+++.|..+ |.+|.++... .|.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 665 68999999999999999999999999999876 7766665433 678887765
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=4.6e-10 Score=125.66 Aligned_cols=274 Identities=18% Similarity=0.271 Sum_probs=196.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------------eeeEeccCCCCeEEEEECCCCCEEEEEeCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---------------SKTNLEEHSSLITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~---------------~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 701 (918)
......|++|+....+||+|+.||.++|..+.+.. .-.++.+|+..|.-+.|+.+...|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568999999999999999999999999876321 123577999999999999999999999999
Q ss_pred CeEEEEeCCCCCceeEEec-cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-Eeec-CceEEEEecCCCEE
Q 002471 702 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKG-GTAQMRFQPHLGRY 778 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~~~~-~~~~v~~sp~~~~l 778 (918)
|.|.||-+..+..+-..+. ...+.|.+++|..+|..+ +....||.|.+=.++..+.-. .+++ ....+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 9999999887443322222 245678999999998765 477889999887776544322 2333 23467899999999
Q ss_pred EEEEcCCeEEEEECCCc-------eEEEE----ecCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCC
Q 002471 779 LAAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t~-------~~~~~----l~~h~~~V~si~~s--------pdg~~Las~s~d-~I~iwdl~s~~~ 838 (918)
+.+-..|.+.+||.... .+... +......|-.++|. ||...|+++..+ .+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99989999999997642 12111 11223346667764 466778887776 777765544433
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---------~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
...+.+ +-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|--.|-.++.+
T Consensus 252 Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 322222 46788899999999999998752 5777766555455777888899999998777777665
Q ss_pred cCCcEEE
Q 002471 910 HDKFVKL 916 (918)
Q Consensus 910 ~Dg~I~I 916 (918)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=3.1e-10 Score=115.99 Aligned_cols=240 Identities=18% Similarity=0.209 Sum_probs=167.7
Q ss_pred CCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEECCCCceeeEeccCC------CCeEEEEECCCCCEEEEEeCCCeEEE
Q 002471 637 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 706 (918)
Q Consensus 637 H~~~V~~l~fsp---dg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~V~I 706 (918)
.+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-+ ....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345566677754 444 56777788999999876555444444321 13567889999999999999999985
Q ss_pred EeCCCC-CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceEEEEecCCCEEEEEEcC
Q 002471 707 WDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 707 wdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~d 784 (918)
-+.... -+.+..++.|...++...|+....+++++|++|+.+..||++..+ ++..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------------------- 204 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------------------- 204 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-----------------------
Confidence 554431 122347889999999999999888999999999999999998322 1110
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
..+.|...|.+|.-+| .+.+|++|+.| .|++||.|+-. +.+..-.. .+.|+.+.++|.-.
T Consensus 205 ---------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 205 ---------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ---------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchhh
Confidence 0133778888888877 46699999999 99999998543 33333222 47899999998643
Q ss_pred -EEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEE-Ee
Q 002471 863 -SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 917 (918)
Q Consensus 863 -~l~s~s~dg~I~vwd~~~~~~~------~~~~h~~~V~~la~spdg~~Lasgs-~Dg~I~-IW 917 (918)
.+++++..+..+|-++..+... ....|.+-++.-.|.....+|+||+ .|+.|+ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 3444455555666666544322 4557888888888865556788876 577755 77
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.8e-08 Score=110.86 Aligned_cols=248 Identities=11% Similarity=0.101 Sum_probs=155.2
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeeEeccCC-------CCeEEEEEC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS-------SLITDVRFS 689 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~----------Dg~V~iwd~~~~~~~~~l~~h~-------~~V~~l~fs 689 (918)
+.+.+..+.....+-. + +||||+.|+++.. +..|.|||+.+++.+..+.... .....++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4555666664443333 4 9999998888765 7899999999999998887432 234478999
Q ss_pred CCCCEEEEEe-C-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Cee-e---EEe
Q 002471 690 PSMPRLATSS-F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 762 (918)
Q Consensus 690 pdg~~Lasgs-~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~-~---~~~ 762 (918)
|||++|++.. . +..|.|+|+.+ ++.+..+.-.. ...-+..++. .+++ -+.||......+.. ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp~-~~~vy~t~e~-~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVPD-CYHIFPTAND-TFFM--HCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCCC-CcEEEEecCC-ccEE--EeecCceEEEEecCCCceEEeeeeee
Confidence 9999999876 3 78999999998 55555554321 1111222211 2111 12244444433322 110 1 111
Q ss_pred ecCc----eEEEEecCCCEEEEEEcCCeEEEEECCCc-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe--
Q 002471 763 KGGT----AQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS-- 824 (918)
Q Consensus 763 ~~~~----~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~si~~spdg~~Las~s-- 824 (918)
.... ..-.|.+.++..+..+.+|.|++.|+... +....+.. ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1100 00134553344444555599999995443 33322221 223344599999999777642
Q ss_pred --------C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEE
Q 002471 825 --------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMT 885 (918)
Q Consensus 825 --------~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s-~dg~I~vwd~~~~~~~~ 885 (918)
. +.|.++|..+. +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+.
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 1 37999999877 55555544 56899999999999 887776 46789999999998874
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.4e-09 Score=125.21 Aligned_cols=212 Identities=12% Similarity=0.115 Sum_probs=138.4
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCeee--EEeecCceEEEEecCCC
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 776 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~sgs~Dg--~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~ 776 (918)
.|.+.|.+. ...+.+......+.+-+|+|||.. ++++...+| .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 334555555666778899999876 333554444 5888888877543 34556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCc---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 002471 777 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 777 ~ll~~~~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~Las~s~-d---~I~iwdl~s~~~~~~i~~ 844 (918)
.++.... +| .+.+|++..+ +...............+|+|||+.|+..+. + .|.++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333334567899999997776663 2 35555554221 12233
Q ss_pred eccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec-C--CcEEEeC
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLWK 918 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~-D--g~I~IWd 918 (918)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|.+||
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 33344566788999999999887654 3799999999988766655567788999999998875443 2 3455543
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=8.9e-09 Score=117.28 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=161.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCe-
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD-VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV- 726 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~-l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V- 726 (918)
++..+++++.++.|+.||.++++.+........ +.+ ..+ .+..++.++.+|.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCcee
Confidence 466888888999999999999998877654322 221 111 345777788899999999987 44444443222111
Q ss_pred ----eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----e------EEE--EecCCCEEEEEEcCCeEEEE
Q 002471 727 ----MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 727 ----~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~sp~~~~ll~~~~dg~I~i~ 790 (918)
.+..+. ++ .++.+..+|.|..+|+++++.+....... . .+. ....++.+++++.++.++.|
T Consensus 180 ~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111122 23 45578888999999999998765543110 0 000 11135788888899999999
Q ss_pred ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEE
Q 002471 791 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 791 D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s 868 (918)
|.++++.+...... ....... ++..|++++.+ .|..+|..+++ .+...... ...+..... .+..|++++
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEe
Confidence 99999888766521 1222222 35566666666 99999998773 33322111 111222222 456899999
Q ss_pred cCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 869 CYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 869 ~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|.|++||..+++.+ .+..+...+..--...++ .|+.++.||.|+.|+
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEeC
Confidence 9999999999999988 555455443332222333 578889999998874
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=2.3e-09 Score=117.01 Aligned_cols=274 Identities=15% Similarity=0.182 Sum_probs=190.8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC---------
Q 002471 632 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--------- 702 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--------- 702 (918)
..+..-..++..++|||.|++|++.... .|.+|+-..+..+..+. ...|..+.|+|+++||.+-+...
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccC
Confidence 3344466789999999999999987654 58999988766555554 34599999999999999976544
Q ss_pred ------eEEEEeCCCCCceeEEeccCCCC--ee-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----eEEee-cCceE
Q 002471 703 ------TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQ 768 (918)
Q Consensus 703 ------~V~Iwdl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~----~~~~~-~~~~~ 768 (918)
.+.|||+.+ +..+..+.....+ .+ -+.|+-++.+.+-. -...|+|+++ +... .+.++ .++..
T Consensus 103 p~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 103 PFTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred CccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceee
Confidence 499999998 7778888776665 55 67788775543322 2457999997 3321 22233 46677
Q ss_pred EEEecCCC--EEEEE-----EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEE
Q 002471 769 MRFQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVR 829 (918)
Q Consensus 769 v~~sp~~~--~ll~~-----~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s------------~d~I~ 829 (918)
..|+|.++ .|++- ...+.++||.+..+..+.+..-....-..+.|.+.|++|++-- +..++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 77888743 23332 2367899999887766654433333445788999998665321 12578
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s--~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
|+++... .+.......++|+.++|.|.++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.
T Consensus 259 l~~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 259 LLRITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred EEeeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence 8888632 2222224478999999999998888776 4458999999888 555556666677888999998888
Q ss_pred EecC---CcEEEeC
Q 002471 908 ASHD---KFVKLWK 918 (918)
Q Consensus 908 gs~D---g~I~IWd 918 (918)
++-| |.|.|||
T Consensus 333 agF~nl~gni~i~~ 346 (561)
T COG5354 333 AGFDNLQGNIEIFD 346 (561)
T ss_pred ecCCccccceEEec
Confidence 7765 5677775
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=6.5e-10 Score=113.66 Aligned_cols=197 Identities=22% Similarity=0.253 Sum_probs=145.6
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--EeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~--~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
...++.|++.+..++++..+|.+.+-+........ +++.|.-.++...|+. +.+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45688899999999999999999966655544444 8899999999999987 45688999999999999999655555
Q ss_pred EE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE--eecCceEEEEecCC-CEEEEEEcCCeEEEEE
Q 002471 717 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHL-GRYLAAAAENVVSILD 791 (918)
Q Consensus 717 ~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~sp~~-~~ll~~~~dg~I~i~D 791 (918)
.. .+-|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++-.+.++|.. ..+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 44 6679999999999998888999999999999999994 454443 34677778887765 3455666666667776
Q ss_pred CCCc--e---EEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEE-EEECCCC
Q 002471 792 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVR-VWTVGSG 836 (918)
Q Consensus 792 ~~t~--~---~~~~l~~h~~~V~si~~spdg~~Las~s-~d-~I~-iwdl~s~ 836 (918)
...+ + .....+.|.+-+..-.|.....+|++|+ .| .|+ +|-..++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6554 2 3344556777677777755545788765 33 434 6654443
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.8e-08 Score=104.29 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=177.2
Q ss_pred CCcEEEEECCCCce-e--eEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCceeEEec---cCCCCeeEE
Q 002471 659 DKKAVLWHTDTLKS-K--TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFM---GHSASVMSL 729 (918)
Q Consensus 659 Dg~V~iwd~~~~~~-~--~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~~~~~~~---~h~~~V~sl 729 (918)
+.-|++|++++..- + ..+-.+...++-|+|+++.++|+++.. +|.|..|.++.....+..+. ....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799999873221 1 122346778999999999999998855 57888888875322222221 122333779
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeeEE---e--e----------cCceEEEEecCCCEEEEEEc-CCeEEEEEC
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F--K----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 792 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~-~~~~~~---~--~----------~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~ 792 (918)
++++++..++++-..-|.|.++-+.. |..... + . .+.....+.|++.++++..- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432221 1 1 12456779999988888775 578999999
Q ss_pred CCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEecc------CCCceEEEEEeCC
Q 002471 793 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 860 (918)
Q Consensus 793 ~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~------~~~~i~~i~~sp~ 860 (918)
..++....-. .....-+.|.|+|++++..+.++= +|.+|..... .+.+.+..+.. ...+...|..+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433211 234567899999999988777754 9999998774 23333333221 2445678889999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEecC-CcEEEe
Q 002471 861 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 917 (918)
Q Consensus 861 g~~l~s~s~d-g~I~vwd~~~--~~~~---~~~~h~~~V~~la~spdg~~Lasgs~D-g~I~IW 917 (918)
|++|+++... +.|.+|.+.. +++. ....+...-+.+.|++.+++|++++.| ..|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999988654 3788887654 4433 223344558899999999999998865 356665
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=7.8e-10 Score=115.05 Aligned_cols=238 Identities=18% Similarity=0.269 Sum_probs=154.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc----eeEEeccCC------------CCeeEEEEcCCCCe-EEEE
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 741 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~----~~~~~~~h~------------~~V~sl~fsp~~~~-ll~s 741 (918)
..+.|.+|.|...|.+||||..+|.|.+|.-+.... ....+..|. ..|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999999999999997654332 222333333 46888999887542 3446
Q ss_pred EeCCCcEEEEEcCCCee-----------------------------------eEEee----cCceEEEEecCCCEEEEEE
Q 002471 742 CDGDGEIRYWSINNGSC-----------------------------------TRVFK----GGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~-----------------------------------~~~~~----~~~~~v~~sp~~~~ll~~~ 782 (918)
...|.+|++|.+..... .+.+. -++.++.++.+...++ .+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 77899999999864321 11111 1344556666655444 45
Q ss_pred cCCeEEEEECCCceEEEE---ecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC-------------c
Q 002471 783 AENVVSILDAETQACRLS---LQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE-------------G 839 (918)
Q Consensus 783 ~dg~I~i~D~~t~~~~~~---l~~h-----~~~V~si~~spdg~--~Las~s~d~I~iwdl~s~~~-------------~ 839 (918)
.|=.|.+|.++-....+. ++.+ ...|++..|+|... ++++.+.++|++.|++.... .
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998875432222 2222 24588999999543 44445555999999984311 0
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCcEE-EEcccC------------CCe---EEEEEeCCC
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET 902 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~-~~~~~-~~~~h~------------~~V---~~la~spdg 902 (918)
.....+..-...|..+.|+.+|+|+++-. .-+|+|||+. ..+.+ ++..|. +.| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11111222234578899999999887643 3589999983 33333 444443 222 457899999
Q ss_pred CEEEEEecCCcEEEeC
Q 002471 903 GYVASASHDKFVKLWK 918 (918)
Q Consensus 903 ~~Lasgs~Dg~I~IWd 918 (918)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=4.3e-10 Score=132.00 Aligned_cols=198 Identities=17% Similarity=0.268 Sum_probs=153.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC----eEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
.+.|....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666778889999999999999998877666555432221 2223346667789999999999999998534
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
..+ .+.+|.+.|.++.|+-+|. +++++++|.+||+|++++.+...
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC---------------------------------
Confidence 444 6889999999999999876 55699999999999999876443
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC-CceEEEEEeCCCCEEEEEEcCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~-~~i~~i~~sp~g~~l~s~s~dg 871 (918)
....+|...|..++|.|+ .++++++| +.++|+... ..+..+..|. ..+..++.+++...+++++.|+
T Consensus 212 -----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 -----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred -----cccccccceeEEEEeccc--eeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 112468899999999988 99999999 999996643 3344555554 4589999999999999999999
Q ss_pred eEEEEECCCC
Q 002471 872 SLELWNMSEN 881 (918)
Q Consensus 872 ~I~vwd~~~~ 881 (918)
.+++||+...
T Consensus 281 ~lk~~~l~~r 290 (967)
T KOG0974|consen 281 TLKLWDLNGR 290 (967)
T ss_pred chhhhhhhcc
Confidence 9999998653
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.2e-10 Score=130.94 Aligned_cols=278 Identities=15% Similarity=0.297 Sum_probs=193.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeeEec-cCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCC-
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLE-EHSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNP- 712 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~-~~~~~~l~-~h~~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~- 712 (918)
.+.+.++..+|.|+-+|.++.-| +.+.|++. +...+-+. ...-.|-++.|++.. .+-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45688899999999999998776 45566663 33333332 123347788888743 34444444555678988642
Q ss_pred -CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-eEE---eecCceEEEEecCCCEEEEEEcCCeE
Q 002471 713 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 787 (918)
Q Consensus 713 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~sp~~~~ll~~~~dg~I 787 (918)
...-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+-....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2344567789999999999999999999999999999999998643 222 23466789999999999999999999
Q ss_pred EEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002471 788 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 788 ~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l 864 (918)
.+||.+.+ .++..+++|...|..+.|..-- ..+.+++.| +|++||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999986 6788899999999999987633 256667777 999999975422 111122234566666666655433
Q ss_pred EEEE--cCCeEEE---------EECCCCc-EE-EEcccCCCeEEEEEeCCC--------C--EEEEEecCCcEEEeC
Q 002471 865 LVIG--CYQSLEL---------WNMSENK-TM-TLTAHEGLIAALAVSTET--------G--YVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s--~dg~I~v---------wd~~~~~-~~-~~~~h~~~V~~la~spdg--------~--~Lasgs~Dg~I~IWd 918 (918)
++-- .+..|.+ |++.++. .+ ++.+|++.|...-|-..+ + .|+|-+.|..+|+|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 3221 1223333 4443332 23 889999998877664321 1 599999999999994
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=2.1e-08 Score=114.16 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
.+..|++++.+|.|..+|..+++.+..+.........+.. ++..+++++.++.|..+|..+ ++.+..... ...+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~-~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKL-SSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeecc-Cceeec
Confidence 3668888989999999999999988777654432223332 467888899999999999987 444443332 222222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE------ecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
.-.. .++.+ +.++.+|.|+.||.++++.+..+......+.+ .-.++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v-~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLV-ANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEE-ECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111 13444 46777999999999999988776543211100 0123577788888999999999998776543
Q ss_pred CCCC----C------e-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002471 803 GHTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 803 ~h~~----~------V-~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.... . + .+..+ .+..+++++.+ .++.||..+++ .+..... ....... ..+..+++++.+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred cccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCce--EeCCEEEEECCC
Confidence 2100 0 1 11112 24456666656 99999998873 3333321 1111122 346678888999
Q ss_pred CeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~~-~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+.|+.+|..+++.+. ..... ..+.+..+ .+.+|++++.||.|++||
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999998773 21211 12222222 356888899999998875
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=9.2e-10 Score=122.48 Aligned_cols=204 Identities=16% Similarity=0.223 Sum_probs=145.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEEeecCceE
Q 002471 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQ 768 (918)
Q Consensus 690 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~~~~~~~~ 768 (918)
+...++|....||.+||||... +.....|. |. +..+..++...|.+.-+. +.+.. .-...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~------------p~-----~~~s~t~~~~~w~L~~~~s~~k~~-~~~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA------------PI-----ASLSGTCTYTKWGLSADYSPMKWL-SLEKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeec------------cc-----hhccCcceeEEEEEEeccchHHHH-hHHHH
Confidence 3456889999999999999986 33222222 11 111112333333321111 10000 00000
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
...+.+...++.|...|.|.+|++..++....+. +|.+.|.++.++.+-..|.+++.| .+..|+.... ..+..+
T Consensus 64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~ 140 (541)
T KOG4547|consen 64 KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIRIW 140 (541)
T ss_pred hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeeeee
Confidence 1122333456777788999999999999888876 599999999999988899999999 9999999765 677788
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEE-EecCCcEEEe
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVKLW 917 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spd-----g~~Las-gs~Dg~I~IW 917 (918)
.+....+.+++++||+..+++++ +.|++||+++++++ .+.+|.++|+++.|..+ |.++.+ +..+..|.+|
T Consensus 141 ~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 141 KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 88888899999999999888877 68999999999988 89999999999999877 666554 4455667777
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.16 E-value=3e-08 Score=123.13 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=184.4
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEE----ECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iw----d~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
...+.|.++.|-++...|+.+..+|.|.++ +..+. .+.....-...|.|++||||+..|+..+.+++|.+.+.+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 456789999999999999999999999999 44332 2333334567899999999999999999999888764320
Q ss_pred ------------CC--cee--------E-------------------------EeccCCCCeeEEEEcCCCCeEEEEEe-
Q 002471 712 ------------PG--YSL--------R-------------------------TFMGHSASVMSLDFHPNKDDLICSCD- 743 (918)
Q Consensus 712 ------------~~--~~~--------~-------------------------~~~~h~~~V~sl~fsp~~~~ll~sgs- 743 (918)
.+ +.+ . .+. +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 00 000 0 011 2334567999999887665543
Q ss_pred -CC---CcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEc---CCeEEEEECCCc---eEEEEecCCCCCeEE
Q 002471 744 -GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQ---ACRLSLQGHTKPIDS 810 (918)
Q Consensus 744 -~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~---~~~~~l~~h~~~V~s 810 (918)
.+ ..||||+-+ |....+.+ +-...++|.|.|+.+++.-. ...|.+|+-+.. +....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 22 579999976 55444332 23457899999988877765 235666654322 222222234567999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC---
Q 002471 811 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPS-LLVIGCYQSLELWNM----SEN--- 881 (918)
Q Consensus 811 i~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~-l~s~s~dg~I~vwd~----~~~--- 881 (918)
+.|++|+.+|+....|.|.+|...+.. .....++... ...+..+.|+|...+ |.+.+.++.+..+++ ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 999999999999988899999986642 2222333322 233445889986544 555555565544332 211
Q ss_pred ------cEEEE-----------------------cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 882 ------KTMTL-----------------------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 882 ------~~~~~-----------------------~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
....+ ......|.+++|++++..+++-..||.|.+|+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 11011 11457899999999998899999999999884
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=3.4e-08 Score=106.75 Aligned_cols=283 Identities=14% Similarity=0.137 Sum_probs=186.7
Q ss_pred CCcccccccCc-cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCC
Q 002471 616 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMP 693 (918)
Q Consensus 616 ~~~~~d~~~~~-s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~ 693 (918)
.++.|-...+- +|+.+..+.+|-..-.-+ .++..+....||.=.||.++ .++-++...... .-.+-..+.||+
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGk 279 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGK 279 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCc
Confidence 34555554443 778888887775433222 23344445567666666554 333222221111 122333456888
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEec-----cC-----CCCeeEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFM-----GH-----SASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~-----~h-----~~~V~sl~-fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.|+... .|.|.+||.++.......+. .. ..++.-+. |++-...+++..+ -|...|.+...+-.+..-
T Consensus 280 rIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 280 RIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred EEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcC
Confidence 877653 57799999987432211111 00 01111122 4444445665555 678888887766555443
Q ss_pred -ecCceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc
Q 002471 763 -KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG 839 (918)
Q Consensus 763 -~~~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~ 839 (918)
++++.-..+..+...++.+..|| .|-|||.++++.... ...-+.|.++..+++|++++++.+. .|-++|+.++.
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-- 434 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-- 434 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--
Confidence 34566666777777888898888 899999998875543 4456789999999999999988888 99999998873
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg----~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
....-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 435 -v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 -VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2233334467799999999999999987776 79999999999987777666677889999999877544
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-09 Score=112.05 Aligned_cols=238 Identities=17% Similarity=0.319 Sum_probs=162.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CCeEEEEECCCCC--EEEE
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLAT 697 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Las 697 (918)
..+.|++|.|...|.||++|...|.|.+|.-+..+ ....|.+|. ..|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765322 223344443 3578888887543 5677
Q ss_pred EeCCCeEEEEeCCCC------------------Cc-----------------------eeEEe-ccCCCCeeEEEEcCCC
Q 002471 698 SSFDKTVRVWDADNP------------------GY-----------------------SLRTF-MGHSASVMSLDFHPNK 735 (918)
Q Consensus 698 gs~Dg~V~Iwdl~~~------------------~~-----------------------~~~~~-~~h~~~V~sl~fsp~~ 735 (918)
.+.|++|++|.+... +. +.+.+ ..|..-|.+|.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999988642 00 01122 3577788999999887
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeE---Eee--------cCceEEEEecCC-CEEEEEEcCCeEEEEECCCceE------
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTR---VFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQAC------ 797 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~--------~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~------ 797 (918)
..+| + ..|-.|.+|+++...-.. .++ .-+++..|+|.. ..+...++.|.|++.|++....
T Consensus 185 et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 6655 4 458899999987542111 111 123556788765 4566777899999999984311
Q ss_pred EE----------EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC------------Cce---
Q 002471 798 RL----------SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NKF--- 852 (918)
Q Consensus 798 ~~----------~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~------------~~i--- 852 (918)
+. -+.+-...|..+.|+++|+++++-+.-+|+|||++..+ .++.++..|. ..|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 11 11223356788999999999998888899999998754 4455543321 112
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
..|.|+-+.+.+++|+..+..-||-.
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEEecCCcccccccccccceeeecc
Confidence 35678888888888887776666653
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=5.1e-08 Score=123.33 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=154.7
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEeCCCCCceeEEecc--C------------CCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 684 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 684 ~~l~fspd-g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788774 55666667788999999864 33333322 1 12357799998877666565566889
Q ss_pred EEEEcCCCeeeEEee-------------------cCceEEEEecCCCEEEEE-EcCCeEEEEECCCceEEEEecCC----
Q 002471 749 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGH---- 804 (918)
Q Consensus 749 ~iwdl~~~~~~~~~~-------------------~~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~~~~~l~~h---- 804 (918)
+++|+.++....... .....++++++++.++++ ..++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999988765332211 122458899966655544 557899999998875432 1110
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceE----------EEecc--------CCCceE
Q 002471 805 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH 853 (918)
Q Consensus 805 -----------~~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i----------~~~~~--------~~~~i~ 853 (918)
-.....|+|+|++..|+++. .+ .|++||+.++...... ..+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345799999998555444 44 9999999865321100 00000 011245
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc--------------CCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h--------------~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 789999999878888888999999998887654432 12577899999999888888999999996
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=7.3e-08 Score=121.91 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=159.9
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEECCCCceeeEecc-C-------------CCCeEEEEECCCCCEEEEEeC-CCeEE
Q 002471 642 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE-H-------------SSLITDVRFSPSMPRLATSSF-DKTVR 705 (918)
Q Consensus 642 ~~l~fspd-g~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~V~ 705 (918)
..++++++ +.++++-..++.|++||... ..+..+.+ . -.....|+|.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55666667788999999764 44433332 1 123578999998887766654 57899
Q ss_pred EEeCCCCCceeEEeccC-----------------CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-----
Q 002471 706 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 763 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----- 763 (918)
++|+.+ + .+.++.+- -..-++|+|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 34443221 11235799999777788788889999999998775432110
Q ss_pred ------------cCceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecC-------------C--------CCCeE
Q 002471 764 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 809 (918)
Q Consensus 764 ------------~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 809 (918)
.....++++++++.++++.. ++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12245889999886665554 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 810 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 810 si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~----------~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
.++|+++|.++++-..+ +|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999987777777 999999976522111100 0111234678899999998888788899999999
Q ss_pred CCCcE
Q 002471 879 SENKT 883 (918)
Q Consensus 879 ~~~~~ 883 (918)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98765
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.9e-08 Score=108.27 Aligned_cols=269 Identities=14% Similarity=0.192 Sum_probs=182.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 709 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~V~Iwdl 709 (918)
-+-+.|||.|.||+|-..- -|.+|--++...+..|. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4668999999999998655 58899877776666665 43 4889999999999999753 257999999
Q ss_pred CCCCceeEEeccC--CCCe-eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--ee-cCceEEEEecCCCEEEEEEc
Q 002471 710 DNPGYSLRTFMGH--SASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK-GGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 710 ~~~~~~~~~~~~h--~~~V-~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~~-~~~~~v~~sp~~~~ll~~~~ 783 (918)
.+ +...+.|... ...+ .-+.|+.|++++. +-....|.||+..+-.++.. ++ .++....|+|.+..|+.-..
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~A--rm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--RMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeE--EeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 6666666542 2223 2468998876443 33347899999876443321 22 35677889998777666443
Q ss_pred -----CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEecc
Q 002471 784 -----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 847 (918)
Q Consensus 784 -----dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-----------~I~iwdl~s~~~~~~i~~~~~ 847 (918)
-.++.+..+.++..+++..-+.-.=..+.|-.+|.+|+.--+. .+.|+.++..........+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 2377888888887777655554444557788888888754321 3566666644322222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEE--cccCCCeEEEEEeCCCCEEEEEe---cCCcEEEeC
Q 002471 848 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASAS---HDKFVKLWK 918 (918)
Q Consensus 848 ~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~-~~~~~~--~~h~~~V~~la~spdg~~Lasgs---~Dg~I~IWd 918 (918)
...|...+|.|.|..+++.+.. .+|.+|.+.+ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 -ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 -KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred -chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 5578889999999998887764 3899998873 322211 11235678899999999988765 456677665
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=8.3e-10 Score=134.68 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=164.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cce
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 767 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~ 767 (918)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-+|....+| ||+.||.|++|....+..+..+.. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666667665422 23334556788888899877776 999999999999998887776653 355
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEE
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 843 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~ 843 (918)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|-. ..+++.+. + .+.+||........+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999987 677777888999999999885 66666542 3 79999987665556666
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 844 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 844 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+|...++++++.|....|++|+.+|.|++||++..+++ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 889999999999999999999999999999999988766 3322 34 556899999999999996
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=3.8e-08 Score=111.98 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=156.7
Q ss_pred cccccCccceeeeeeecCCCCeEEEEEccCC------------CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE
Q 002471 620 MDVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 687 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg------------~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 687 (918)
+.+.+..+++.+.+++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.+.|.+++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 3444556888999999999999999998722 2678888899999999999999999999999999999
Q ss_pred ECC---CC-CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------
Q 002471 688 FSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG------- 756 (918)
Q Consensus 688 fsp---dg-~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~------- 756 (918)
|-+ +. ..|++-....+|.+|+.++ +..+..+........|+.+.|.+..-++.-+..|.|.+-+.-..
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 977 33 3566667788999999998 44454444445567779999876666656666777777665321
Q ss_pred eeeEEeec--------------------C--------ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCe
Q 002471 757 SCTRVFKG--------------------G--------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 808 (918)
Q Consensus 757 ~~~~~~~~--------------------~--------~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V 808 (918)
+....-.. . ...++|+|.-..++.......+.|+|++-..++..+.-..+.+
T Consensus 196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a 275 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA 275 (1062)
T ss_pred eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence 11111000 0 0124578888888888899999999999888888777666766
Q ss_pred EEEEEcCCCC--EEEEEeCC-eEEEEECC
Q 002471 809 DSVCWDPSGE--LLASVSED-SVRVWTVG 834 (918)
Q Consensus 809 ~si~~spdg~--~Las~s~d-~I~iwdl~ 834 (918)
.-+.|-|+++ .|++...+ .+.||-.+
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 7777777665 67777666 77777543
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=1.5e-07 Score=101.88 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=114.9
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg-~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
-+|...|.-..+..+++-++.|..|| .|-|||.++++ ++.+...-+.|.++..+++|++++++.....|.+.|+++ +
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-g 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-G 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-C
Confidence 36788899999999999999999999 89999998876 455556678899999999999999999999999999998 4
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D----g~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~ 783 (918)
.....-+...+-|+.+.|+|++..+. -+--+ ..|+++|+..++....-.. ...+-+|.|++++|..-+.
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 44444445667899999999977554 33334 4699999999887665432 3445678888887766553
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=132.40 Aligned_cols=224 Identities=14% Similarity=0.241 Sum_probs=164.7
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++. ....|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3456678899999999999999999999999999988888877762 33889999999999999999999999999997
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.++......|.....+++|.. .++++++ .++.+.+||..-...
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~------------------------------ 2327 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM------------------------------ 2327 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc------------------------------
Confidence 467788889999999999985 3555553 357788887532110
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
..++. ..|...++++++.|...+|++|+.+ .|++||++.. ..++.+.. ++ ...+|+++
T Consensus 2328 ------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2328 ------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TREYFVTG 2386 (2439)
T ss_pred ------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhheeecc
Confidence 01122 4588899999999999999999988 9999999754 33333322 44 56678999
Q ss_pred EcCCeEEEEECCCCcEE-EEc---ccCCCe----EEEEEeCCCCEEEEEecCCc
Q 002471 868 GCYQSLELWNMSENKTM-TLT---AHEGLI----AALAVSTETGYVASASHDKF 913 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~---~h~~~V----~~la~spdg~~Lasgs~Dg~ 913 (918)
+..|.|+||++.....+ .+. +|.+.. .-+.+.. +..|.+|+.||+
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred CcccceEEEEccccchhhcCchhhcccchhhhcCceeeecc-CceEEEecCCCC
Confidence 99999999999877655 211 222211 1122223 346778888874
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.1e-07 Score=108.97 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=130.0
Q ss_pred CeEEEEEccCCCE-EEEEeCC---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe-CC--CeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FD--KTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~-Latgs~D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D--g~V~Iwdl~~~ 712 (918)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.|+... .+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7888999999984 6654443 468999998876554443 555677789999998776543 33 4677778875
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcC------
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 784 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d------ 784 (918)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 4444444443456789999998887776555 58888888887655443332345899999998887753
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002471 785 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 834 (918)
Q Consensus 785 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~ 834 (918)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 368888998886533 3322 233468899999976655533 36666664
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=8.1e-07 Score=110.56 Aligned_cols=257 Identities=14% Similarity=0.190 Sum_probs=167.0
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeC---C---CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCe
Q 002471 633 SVRASTSKVICCHFSSDGKLLATGGH---D---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKT 703 (918)
Q Consensus 633 ~l~~H~~~V~~l~fspdg~~Latgs~---D---g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~ 703 (918)
.+. +.+.-..|+|-.||.|+|+.+. + ..||||+-+ |....+-+.-.+--.+++|.|.|++||+.-. ...
T Consensus 205 ~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 205 KLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 344 6677889999999999999875 2 579999965 6655555555555678899999999999865 445
Q ss_pred EEEEeCCCCCceeEEe----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE--e--e--cCceEEEEec
Q 002471 704 VRVWDADNPGYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--K--GGTAQMRFQP 773 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~--~--~--~~~~~v~~sp 773 (918)
|.+|.-+ +.....| ......|..|.|+.++.-|. ..-.| .|.+|-..+.....+ + . .....+.|++
T Consensus 283 VvFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLA-v~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 283 VVFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILA-VWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEE-EEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 7777654 2222222 23456799999999977444 44444 499999888753222 2 1 1234488988
Q ss_pred CCCE-EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc----CCCC-EEEEEeCCeEEEEECCCCCCc--ceEEEe
Q 002471 774 HLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD----PSGE-LLASVSEDSVRVWTVGSGSEG--ECVHEL 845 (918)
Q Consensus 774 ~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s----pdg~-~Las~s~d~I~iwdl~s~~~~--~~i~~~ 845 (918)
.... +.+.+.++.+.+++.. ..++.+ |+.. .+++...+++++-.++....+ -+...+
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~---------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFA---------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEE---------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 7654 5555555777666542 111222 2233 444444458888888765433 333444
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---------EEc----------ccCCCeEEEEEeCCCCEEE
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---------TLT----------AHEGLIAALAVSTETGYVA 906 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~---------~~~----------~h~~~V~~la~spdg~~La 906 (918)
.. ...|..++|++++..+++...||.|.+|........ .+. .....+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 44 567999999999998999999999999885432111 111 1234578888888777666
Q ss_pred EEecC
Q 002471 907 SASHD 911 (918)
Q Consensus 907 sgs~D 911 (918)
....+
T Consensus 503 ~~~~~ 507 (928)
T PF04762_consen 503 LSDSD 507 (928)
T ss_pred EEecC
Confidence 65554
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=3.3e-07 Score=105.06 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=144.1
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCE-EEEEeCC---CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCC
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|.++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345554544333 33333333 7888999999985 6654443 4688889976 332 3333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeeEEeecC--ceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCe
Q 002471 736 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 808 (918)
Q Consensus 736 ~~ll~sgs~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 808 (918)
..++++.+.+ ..|+++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888898887654433322 3456899999988887753 2 688889988876443321 111
Q ss_pred EEEEEcCCCCEEEEEeC--------C--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 002471 809 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 875 (918)
Q Consensus 809 ~si~~spdg~~Las~s~--------d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~v 875 (918)
...|+|||++|+..+. + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999997776553 2 577888876632 222222 2233578999999888876543 5778
Q ss_pred EECCCCcEEEEcccCCCeEE
Q 002471 876 WNMSENKTMTLTAHEGLIAA 895 (918)
Q Consensus 876 wd~~~~~~~~~~~h~~~V~~ 895 (918)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766665554444443
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=1.6e-09 Score=122.04 Aligned_cols=217 Identities=20% Similarity=0.291 Sum_probs=155.3
Q ss_pred ccccccCccceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEE
Q 002471 619 GMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLA 696 (918)
Q Consensus 619 ~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~La 696 (918)
+|.+.+...-.....+.+|+..|+.+.|.+.. ..|++++.|-.|..||+.+. ..+..+..-......|+|+-....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 45555554555667789999999999999844 68999999999999999854 45555555556678899998666666
Q ss_pred EEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEEEEe
Q 002471 697 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQ 772 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s 772 (918)
+.+..+.|+|||++.++.++..+++|...|+.++|...-...+.+++.||+|++||.......... +..+-.-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 667778899999999899999999999999999998765556779999999999998765322221 1122233344
Q ss_pred cCCCEEEEE-----------EcCCeEEEEECCC-ceEEEEecCCCCCeEEEEEcC--------CCC--EEEEEeCC-eEE
Q 002471 773 PHLGRYLAA-----------AAENVVSILDAET-QACRLSLQGHTKPIDSVCWDP--------SGE--LLASVSED-SVR 829 (918)
Q Consensus 773 p~~~~ll~~-----------~~dg~I~i~D~~t-~~~~~~l~~h~~~V~si~~sp--------dg~--~Las~s~d-~I~ 829 (918)
|-+.-++.- -.++....|+..+ ...+++|.+|.+.|....|-. |.+ -|++=+.| +++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 433322221 1122333344433 368899999999887666543 222 68899999 999
Q ss_pred EEECCC
Q 002471 830 VWTVGS 835 (918)
Q Consensus 830 iwdl~s 835 (918)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998854
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=5.4e-10 Score=127.65 Aligned_cols=262 Identities=16% Similarity=0.193 Sum_probs=180.4
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC--eE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~V 704 (918)
.|+..++++.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+-|.=+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999877765533 47
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-------CceEEEEecCCCE
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-------GTAQMRFQPHLGR 777 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-------~~~~v~~sp~~~~ 777 (918)
.+|++.+......+|.+ ..++.|+.....-+ .|.......+||+.++..+.++-. ...+..|+|++..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555555553 44577875533223 344456789999999876655322 2356778888776
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 778 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
++- || .+||++..+.++.|......+ .-.|+|.|.-++.-++ |||+++......+-.+ .-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP~L-----dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKLLHSVPSL-----DQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHHHhcCccc-----cceEEEe
Confidence 652 33 589999988887776544332 3469999997777654 8999887432222222 1234567
Q ss_pred eCCCCEEEEEEc-----C------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 858 HPTYPSLLVIGC-----Y------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 858 sp~g~~l~s~s~-----d------------g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
...|..++..-. + ...+-||...-..+........|..+|-++...+++..
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 766665544320 0 02333444444444333445556666666666665543
No 286
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=2.4e-08 Score=104.34 Aligned_cols=244 Identities=12% Similarity=0.205 Sum_probs=167.6
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcE
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEI 748 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I 748 (918)
...+..+++|.+.|++...-|...-+++.+.|.+||||--++.+..... ......+++++.+.++... |+.+-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~-L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR-LYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE-EEEEEecceE
Confidence 3456678899999999999998889999999999999966553433322 2235678899999988654 4478888999
Q ss_pred EEEEcCCC----eeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEE
Q 002471 749 RYWSINNG----SCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 821 (918)
Q Consensus 749 ~iwdl~~~----~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~La 821 (918)
.-+.+... ...+.+. ..+..+.|+.....++..+.|..+.---.+.+..+..+.- ...-+++.|+-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 88876432 2222222 2345566666667777777777665444444332211100 001111111111 222
Q ss_pred EEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEE
Q 002471 822 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAV 898 (918)
Q Consensus 822 s~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~ 898 (918)
.|... .|.+-.+.. .....+..+.+|...+.++.|.+....|++|..|..|.+||+..++-+ .+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33322 333332221 234678889999999999999999999999999999999999766654 78899999999999
Q ss_pred eCCCCEEEEEecCCcEEEeC
Q 002471 899 STETGYVASASHDKFVKLWK 918 (918)
Q Consensus 899 spdg~~Lasgs~Dg~I~IWd 918 (918)
.+--+.+++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88888999999999999996
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=2.5e-07 Score=93.77 Aligned_cols=247 Identities=9% Similarity=0.002 Sum_probs=161.3
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 659 DKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 659 Dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
...|.+|++-+.. .+..+. ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.=.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 4457777765432 122221 3344544 345899999999999999987555555555555544322211
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCc-e-EEE-EecCCCC
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHTK 806 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~-~~~-~l~~h~~ 806 (918)
-+...-+..++.|.++++.+++.+....... .....+.+++++.++++++....|..|.+... + .+. ......+
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 1222223467889999999887664433332 23677889999999999999999999987653 2 222 2333455
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--eEEEeccCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCCC
Q 002471 807 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CVHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSEN 881 (918)
Q Consensus 807 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~--~i~~~~~~~~~i~~i~~sp~g~--~l~s~s~dg~I~vwd~~~~ 881 (918)
.-.+..|+.....+|++..| ++.|||++...... ....-..|.+.+..|.|++.|. .|+..-.-+.+.|.|++++
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 56788999999999999999 99999998764322 2223345788999999998764 3455555578999999988
Q ss_pred cEEE--------EcccCC-CeEEEEEeCCCCEEEEEecC
Q 002471 882 KTMT--------LTAHEG-LIAALAVSTETGYVASASHD 911 (918)
Q Consensus 882 ~~~~--------~~~h~~-~V~~la~spdg~~Lasgs~D 911 (918)
+-.. ...|.. .|..-.|+.++.-+.+.+++
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 7541 122332 37777888777666555543
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.2e-07 Score=108.04 Aligned_cols=261 Identities=15% Similarity=0.222 Sum_probs=170.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCC------------CEEEEEeCCCeEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRV 706 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg------------~~Lasgs~Dg~V~I 706 (918)
..-.++.|++.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|.. -+||++...|.|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336788899888 7777764 478999999999999999999999999998721 15677777899999
Q ss_pred EeCCCCCceeEEeccCCCCeeEEEEcCC---CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc---eEEEEecCC-CEEE
Q 002471 707 WDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL-GRYL 779 (918)
Q Consensus 707 wdl~~~~~~~~~~~~h~~~V~sl~fsp~---~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~-~~ll 779 (918)
||+.. ...+..+..|.++|..++|.+. .++++++-....+|.+|+..+|+....+.... .++.+.|-+ ..+.
T Consensus 94 ~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99997 6667778889999999999763 44667677778999999999998887765432 345666654 3444
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---CceEEE
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKFHSC 855 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i~~i 855 (918)
+.+..|.|.+.+.-..+ ....+ |+.+-..++. .+.--..++... ......+... .....+
T Consensus 173 ~l~s~g~vl~~~~l~~s------ep~~p---------gk~~qI~sd~Sdl~~lere~at~-ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLS------EPDVP---------GKEFQITSDHSDLAHLERETATG-NSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred EEccCceEEEEeccCCC------CCCCC---------ceeEEEecCccchhhhhhhhhcc-ccccCCCcchhHHHHHHhh
Confidence 44555555444322110 01111 1111111110 000000000000 0000000000 012345
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC--EEEEEecCCcEEEeC
Q 002471 856 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG--YVASASHDKFVKLWK 918 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~--~Lasgs~Dg~I~IWd 918 (918)
+|+|..+.++....-+.+.|+|++-..++ .+.-..+.+.-+.|-|+++ .|++.-.||.+.||.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 78999988888889999999999988777 4444556677777777654 688888999999983
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4e-08 Score=105.82 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=160.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeEecc--CCCCeEEEEECCC-CC-EEEEE-eC
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPS-MP-RLATS-SF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspd-g~-~Lasg-s~ 700 (918)
-.+-+..++.|...|.+++.+-||.+++|.+. |+.++++|+++...+.-++. -.+.+.+ ..++. .. .|+++ -.
T Consensus 42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFK 120 (558)
T ss_pred ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeeccc
Confidence 34566778899999999999999999999887 99999999987665544332 2222222 22332 11 33333 34
Q ss_pred CCeEEEEeCCCCCcee-EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEE
Q 002471 701 DKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 779 (918)
++.|.|+|-....... ..-.-|..+|.++.+.+.++..+ +....|.|..|..+. .|.-....+.|
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qfPr~~l~~-------- 186 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQFPRTNLNF-------- 186 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccCccccccc--------
Confidence 8899999987655333 34445999999999999987655 888889999998763 11111111222
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--------------
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE-------------- 844 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~-------------- 844 (918)
.+....-+..+........+++|+|++..+.+-+.| .|+++++++++....+.+
T Consensus 187 -----------~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 187 -----------ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred -----------cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 222222233333345667899999999999999999 999999988743222111
Q ss_pred ---------------eccC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC
Q 002471 845 ---------------LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 891 (918)
Q Consensus 845 ---------------~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~ 891 (918)
+..+ ...-+.++|...+++|+.++--| |+|+++.++++.++.+...
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE 317 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence 1111 12345678999999998887654 8899999988876655443
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.7e-09 Score=116.36 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=134.3
Q ss_pred eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC
Q 002471 673 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 746 (918)
Q Consensus 673 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg 746 (918)
+..+.+|...|..++--.+.+-+++++.|++|++|.++..+ .+-.++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 45677999999999888888899999999999999998643 25567889999999999998754 44354 89
Q ss_pred cEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-eC
Q 002471 747 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SE 825 (918)
Q Consensus 747 ~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-s~ 825 (918)
.|.+||.--++.+.... +.|. .+....|.|+. +-+..+++.+ +.
T Consensus 805 giHlWDPFigr~Laq~~-------dapk---------------------------~~a~~~ikcl~-nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME-------DAPK---------------------------EGAGGNIKCLE-NVDRHILIAGCSA 849 (1034)
T ss_pred cceeecccccchhHhhh-------cCcc---------------------------cCCCceeEecc-cCcchheeeeccc
Confidence 99999976655443221 1111 01112222221 1133344444 45
Q ss_pred C-eEEEEECCCCCCcceEEEe--ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 002471 826 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE 901 (918)
Q Consensus 826 d-~I~iwdl~s~~~~~~i~~~--~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spd 901 (918)
. +|+++|.+..+-...++.. .+....+.+++..+.|++++++-.+|+|.+.|.++|+++ .+...+.....++- |.
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-ps 928 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PS 928 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-ch
Confidence 5 8999999887432222222 223455889999999999999999999999999999977 34333333332322 33
Q ss_pred CCEEEEEecCCcEEE
Q 002471 902 TGYVASASHDKFVKL 916 (918)
Q Consensus 902 g~~Lasgs~Dg~I~I 916 (918)
...|+....|.++.|
T Consensus 929 dq~L~~saldHslaV 943 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAV 943 (1034)
T ss_pred hHHHHhhcccceeEe
Confidence 344444444555444
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=1.1e-06 Score=92.89 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=138.0
Q ss_pred CCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCC
Q 002471 658 HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 658 ~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
.+|+|..||..+++.+.....- .....+. ...++.+|++++.++.|..||..+ ++.+..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-cc
Confidence 3689999999999998887641 1222222 223566888888999999999988 555555443 2222211122 23
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeeEEe-ecC------ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-
Q 002471 736 DDLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP- 807 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~- 807 (918)
+.++ .+..++.|+.+|.++++.+..+ ... .........++.++++..++.|..+|.++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 4444 5557889999999999988874 321 122333444788888988999999999999998888664422
Q ss_pred ---------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 808 ---------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 808 ---------V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
+.+-.+..++ .++.++.+ . +.+ |+.+++ .+.... ...+.. ....++..|++++.++.|.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 1222233345 55555544 4 555 998874 332222 122222 245677888888899999999
Q ss_pred ECCCCcEE
Q 002471 877 NMSENKTM 884 (918)
Q Consensus 877 d~~~~~~~ 884 (918)
|+++++.+
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999875
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-08 Score=103.80 Aligned_cols=233 Identities=16% Similarity=0.261 Sum_probs=145.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce----eEEeccCC------------CCeeEEEEcCCC-CeEEEE
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 741 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 741 (918)
....|++|.|...|.||++|...|.|.+|.-+....| +..|.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999987653322 22344443 457888887653 333446
Q ss_pred EeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc---------CCeEEEEECCCceEEEE-ecCCCCCeEEE
Q 002471 742 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLS-LQGHTKPIDSV 811 (918)
Q Consensus 742 gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~-l~~h~~~V~si 811 (918)
.+.|.+|++|.+.......+.......-.-+|.++-+.+... |..|..+ +.+. -..|..-|.+|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNSi 178 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINSI 178 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeeee
Confidence 677999999999865332221111111111222211111000 1111111 1111 14578889999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-
Q 002471 812 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM- 884 (918)
Q Consensus 812 ~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~-----~~i~~i~~sp~g-~~l~s~s~dg~I~vwd~~~~~~~- 884 (918)
.|..|...++++.+=.|.+|++......-.+..++.|. ..|++..|+|.. ..+...+..|.|++-|++...+.
T Consensus 179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 99999888876655599999987654333333444432 347788899964 55667778899999999832211
Q ss_pred --------EE--------cccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 885 --------TL--------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 885 --------~~--------~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+ ..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 123357889999999999987653 4799997
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.3e-06 Score=100.19 Aligned_cols=252 Identities=11% Similarity=0.028 Sum_probs=155.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCe---
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 726 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V--- 726 (918)
+..++.++.+|.|+.+|.++++.+............... .+..|++++.++.|..+|..+ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 457778888999999999999988877654321111112 244677788899999999998 44444433211100
Q ss_pred --eEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCc----e------EEEEec--CCCEEEEEEcCCeEEEEEC
Q 002471 727 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 727 --~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~~sp--~~~~ll~~~~dg~I~i~D~ 792 (918)
.+-... ++. ++.++.+|.|..+|..+++.+..+.... . .+...| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467779999999999998766543210 0 011111 3577888888999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEEcC
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g~~l~s~s~d 870 (918)
.+++.+...... ....+.. ++..|+.++.+ .|..+|..+++. +...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE---LWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE---EEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 34555555555 999999987732 2221111 111222222 25678899999
Q ss_pred CeEEEEECCCCcEE-EEcccCCCeE-EEEEeCCCCEEEEEecCCcEEEeC
Q 002471 871 QSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 871 g~I~vwd~~~~~~~-~~~~h~~~V~-~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.|+++|..+++.+ ........+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999987 3332323233 2222 244788889999998764
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.9e-07 Score=99.64 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=150.3
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 662 V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ..++..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66777667777777888999999999999777 788999999999999998 6677777777 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeeE-Eeec-----CceEE------EEecCCCEEEEEEcCCeEEEEEC----CCceEEEEecCC
Q 002471 741 SCDGDGEIRYWSINNGSCTR-VFKG-----GTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 804 (918)
Q Consensus 741 sgs~Dg~I~iwdl~~~~~~~-~~~~-----~~~~v------~~sp~~~~ll~~~~dg~I~i~D~----~t~~~~~~l~~h 804 (918)
+|...|.|.|||++..+-.. .+.+ .+..+ ...+.++.+++...+- ..|+. +...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998754221 1111 11111 2333444444444332 23322 2222222222 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC----eEEEE----ECCCCCCcceEEEe-ccC-CCce------EEEEEeCCCCEEEEE
Q 002471 805 TKPIDSVCWDPSGE-LLASVSED----SVRVW----TVGSGSEGECVHEL-SCN-GNKF------HSCVFHPTYPSLLVI 867 (918)
Q Consensus 805 ~~~V~si~~spdg~-~Las~s~d----~I~iw----dl~s~~~~~~i~~~-~~~-~~~i------~~i~~sp~g~~l~s~ 867 (918)
.+.+.++.+++..+ +|++.-.+ .++.. |.+++ ..+... ..+ +.+- ..+.-.++..+|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 44555566665444 44444332 11111 11111 111100 011 1111 112223455555544
Q ss_pred E-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC-C-CCEEEEEecCCcEEEeC
Q 002471 868 G-CYQSLELWNMSENKTMTLTAHEGLIAALAVST-E-TGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s-~dg~I~vwd~~~~~~~~~~~h~~~V~~la~sp-d-g~~Lasgs~Dg~I~IWd 918 (918)
+ ..+.+.+||..+.+++....-..+|.+++... + +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 4 34699999999999985556668888887654 2 34666554 55788875
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.81 E-value=1.1e-05 Score=85.97 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=138.0
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 643 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 643 ~l~fsp-dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++. +++ .|+.+..++ +.++|+.+ +.....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678988 66677776678999999998776543 22222 6677777 564 555555554 56669887 33222222
Q ss_pred c-----CCCCeeEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEE-cC
Q 002471 721 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA-AE 784 (918)
Q Consensus 721 ~-----h~~~V~sl~fsp~~~~ll~sgs~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~-~d 784 (918)
. .....+++++.++|. +.++.... |.|..++.. ++...... .....++|+++++.++++. ..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 345688999999987 44454433 567888877 55444333 3456799999999877654 47
Q ss_pred CeEEEEECCC--c-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002471 785 NVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 856 (918)
Q Consensus 785 g~I~i~D~~t--~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 856 (918)
+.|..|++.. . +....+.........++++.+|++.++.... .|.++|.+ + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8899998853 2 1122222222347889999999977776655 99999986 4 45555555556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002471 857 FH-PTYPSLLVIG 868 (918)
Q Consensus 857 ~s-p~g~~l~s~s 868 (918)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767666654
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=7.1e-08 Score=108.54 Aligned_cols=229 Identities=16% Similarity=0.201 Sum_probs=161.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC--------------ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 745 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~--------------~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D 745 (918)
.....|+.|+.+..+|++|+.||.++|..+.+.. ..-.++.||...|.-+.|+..... +.+.+.+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCC
Confidence 4458899999999999999999999999886521 112467899999999999987654 4488899
Q ss_pred CcEEEEEcCCCeeeEEe-----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEE-EEecCCCCCeEEEEEcCCCCE
Q 002471 746 GEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR-LSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 746 g~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~-~~l~~h~~~V~si~~spdg~~ 819 (918)
|.|.+|-+-.+.....+ +.-+.+++|..+|.++..+..||.|.+=.++..+.- +.+++ .-...+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHH
Confidence 99999998877543322 234567889999999999999998877665543221 11221 22457889999986
Q ss_pred EEEEeCC-eEEEEECCCCCC----cceE----EEeccCCCceEEEEE--------eCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 820 LASVSED-SVRVWTVGSGSE----GECV----HELSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 820 Las~s~d-~I~iwdl~s~~~----~~~i----~~~~~~~~~i~~i~~--------sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
++.+-.+ .+.+||....-. ..|. ..+......|..+.| -|+.+.|+++-..|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 6666555 899999754311 1121 112222334555555 3588899999999988887655444
Q ss_pred EEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 883 TMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.-.+....-.|..+.|+++|.+|+.++.|
T Consensus 251 ~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 251 EPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCeEEecccEeecceecCCCcEEEEccCc
Confidence 33344444778899999999999998865
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=1e-05 Score=86.34 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=138.3
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe
Q 002471 684 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 762 (918)
Q Consensus 684 ~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~ 762 (918)
.++.|.+ ++.++++-...+.|..|+..+. ....+.... ...+++...++.++ .+.. +.+.++|+.+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVEVIDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCC--eEEEEecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 3678888 6666666667899999999873 223232222 67777773335555 4443 55566699988655443
Q ss_pred ec--------CceEEEEecCCCEEEEEEcC--------CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 763 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 763 ~~--------~~~~v~~sp~~~~ll~~~~d--------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
.. ....+++.++++.+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 23568899998866655442 568888888 55443333 34557899999999977655444
Q ss_pred --eEEEEECCCCCC-c---ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002471 827 --SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 899 (918)
Q Consensus 827 --~I~iwdl~s~~~-~---~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~s 899 (918)
.|..|++..... . ..+..+....+....+++..+|..+++....+.|.++|.. ++.+ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888888864322 1 2223333333457889999999988877788999999998 6655 444444689999994
Q ss_pred -CCCCEEEEE
Q 002471 900 -TETGYVASA 908 (918)
Q Consensus 900 -pdg~~Lasg 908 (918)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 665655543
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.77 E-value=7.5e-07 Score=90.41 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=128.8
Q ss_pred CCeEEEEeCCCCCc-eeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEe-ecCceEEE----
Q 002471 701 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 770 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~~~~~~v~---- 770 (918)
...|-+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|...+|...+....... ..+...+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34578888876432 2333322 444442 2336778889999999999866533222 22222111
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002471 771 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 849 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 849 (918)
+......+..++.|.++++++++-+.....+....-.+.++.+++|++++++.++. .|.+|.+....+...-.......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 11222456777888888888877554333332222338899999999999999888 89999997654322222333334
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 903 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~------~~~~h~~~V~~la~spdg~ 903 (918)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 44567789999999999999999999999876543 3446899999999998654
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=5.5e-08 Score=103.97 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=88.4
Q ss_pred EEEEccCCCEEEE---EeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 643 CCHFSSDGKLLAT---GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 643 ~l~fspdg~~Lat---gs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
++.|..+...... ++....+.+|....+. ...+-+|-..+++|+|+||+++|+++..|..|||-........-..+
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 3344444444444 4445556666655543 34455899999999999999999999999999999887633333455
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
.||+..|..++..++ ++|++++.|++|++||+++++++.++.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 689999999999875 356699999999999999999887764
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=4.5e-06 Score=86.43 Aligned_cols=224 Identities=16% Similarity=0.116 Sum_probs=121.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEecc---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
++.+.||++||+-- |..|.|=..++. ..+.+... ..-.=+.++|+||+..||.+...|+|+|||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 56778998888764 666666554321 12222222 223357899999999999999999999999984 33333
Q ss_pred eccCC-------CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 719 FMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 719 ~~~h~-------~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
+.... ..|..+.|.+. +. . ......+++...+|.++-|-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~-------------------~~------------s---~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEY-------------------KK------------S---AQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred cCcccccCCccccceeeeEeecc-------------------cc------------c---cccceeEEEEeccceeeeEE
Confidence 33211 11222222111 10 0 01112345555555554443
Q ss_pred CC-----CceEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 792 AE-----TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 792 ~~-----t~~~~~~--l~~-h~~~V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
+. .....++ +.. +...|.++.|+|..++|++|+.. . -..+.. ....+++-..-.+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDS 191 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCC
Confidence 31 1122222 322 46789999999998977777654 2 001100 01111111111111
Q ss_pred CE--EEEEEcCC------eEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 862 PS--LLVIGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 862 ~~--l~s~s~dg------~I~vwd~~~~~~~~-~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++ .++...|+ +..+|.+-+.+... .......|..|..+|||..||+...+|.|.||+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11 11111121 23445544444332 234567899999999999999999999999996
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=1.7e-06 Score=99.13 Aligned_cols=255 Identities=9% Similarity=0.043 Sum_probs=151.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC-Ce-E-----EEEECC--CCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LI-T-----DVRFSP--SMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~-~V-~-----~l~fsp--dg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
+..+++++.+|.|.-+|.++++.+........ .+ . .+.-.| ++..|+.++.+|.|..+|.++ ++.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~t-G~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAED-GEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCC-CCCccccc
Confidence 55778888889999999999988877653221 00 0 000011 356788888899999999988 44444333
Q ss_pred cCCCCeeE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEE----Ee--cCCCEEEEEEcCCeEEEEECC
Q 002471 721 GHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQ--PHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 721 ~h~~~V~s-l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~s--p~~~~ll~~~~dg~I~i~D~~ 793 (918)
.. ..+.+ .... ++. ++.+..+|.|..+|.++++.+..+......+. .+ ..++.++++..++.+..+|..
T Consensus 148 ~~-~~~~ssP~v~--~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VA-GEALSRPVVS--DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CC-CceecCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 22 22221 1222 233 44677799999999999998887754321110 01 124567888889999999999
Q ss_pred CceEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 794 TQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 794 t~~~~~~l~~h~~-------~V~si~~sp--dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+++.+........ ....+..+| .+..+++++.+ .+..+|..+++. +..... .....+. ..+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~--~~~~~~~--~~~~~ 296 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREY--GSVNDFA--VDGGR 296 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecC--CCccCcE--EECCE
Confidence 9987766432110 011111122 23445555555 999999988742 222211 1111122 24667
Q ss_pred EEEEEcCCeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 864 LLVIGCYQSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~~-~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|++++.++.|..+|..+++.+. ..... ....+..+ .+.+|+.++.||.|++.|
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 8889999999999999998762 21111 11222222 244677778888877653
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=9e-06 Score=86.73 Aligned_cols=245 Identities=15% Similarity=0.129 Sum_probs=159.9
Q ss_pred eEEEEEcc-CCCEEEEEeCCCc-EEEEECCCCceeeEeccCCCCe--EEEEECCCCCEEEEEeC-----CCeEEEEeCCC
Q 002471 641 VICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDADN 711 (918)
Q Consensus 641 V~~l~fsp-dg~~Latgs~Dg~-V~iwd~~~~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~ 711 (918)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.- =.-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 44677888 5567777777665 6789999988887765432221 13489999999999743 58899999996
Q ss_pred CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 712 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 712 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
.-..+..+..|.-.-..|.+.||++.|++. +|-|.- ..++++. ++=....+-.+.+.|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~T-hpd~GR~------------------kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIET-HPDSGRA------------------KLNLDTMQPSLVYLD 144 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCcc-CcccCce------------------ecChhhcCCceEEEe
Confidence 567778888887777889999999777744 333321 0111111 111223345677788
Q ss_pred CCCceEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEE----EeccCCCceEEE
Q 002471 792 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC 855 (918)
Q Consensus 792 ~~t~~~~~~--l--~~h~~~V~si~~spdg~~Las~s~d--------~I~iwdl~s~~~~~~i~----~~~~~~~~i~~i 855 (918)
.++++.+.. + ..|.-.|+.+++..+|..++..-.. -|.+++.... ...+. ....-.+.+-+|
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEE
Confidence 888887766 3 3377789999999999877655321 2455544321 11111 112235678999
Q ss_pred EEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 856 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 856 ~~sp~g~~l~s~s~d-g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+++.++.++++.+-- +.+.+||..+++++....- ..+..++..+++ +++|.+..
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 999999988776654 5999999999998844322 235556655555 66665543
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.6e-06 Score=92.72 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=149.8
Q ss_pred cceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCC-EEEEEeCCCeE
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 704 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~V 704 (918)
+|+....+.+|...|.+++|||... +|..++.+.+|+|.|+++...+..+..+ ..|++++|.-|.. +|+.|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5666667889999999999999776 7888999999999999999999999888 7899999998765 56677779999
Q ss_pred EEEeCCCCCceeEEecc--CCCCeeEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeeEEeecCc--eEEE
Q 002471 705 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGT--AQMR 770 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~~~~~--~~v~ 770 (918)
.|||++.+...+..+.+ ...+|..|+.-+ .+. +++... -.+..|++... .++..+.... ..+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeee--hhhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976655444433 234455444332 233 332332 23556665432 2222232222 2333
Q ss_pred EecCCCEEEEEEcCC--------eEEEEECCCceEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002471 771 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 832 (918)
Q Consensus 771 ~sp~~~~ll~~~~dg--------~I~i~D~~t~~~~~~l~-~h-~~~------V~si~~spdg~~Las~s~d--~I~iwd 832 (918)
+.+..+.+++....+ .+.-.|.++|..+...+ .+ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444446666655431 11122444444333221 12 111 0112223455677766666 899999
Q ss_pred CCCCCCcceEEEeccCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 002471 833 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 833 l~s~~~~~~i~~~~~~~~~i~~i~~-sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..++ ..+..+... .+|..++. +-++..++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9887 455555443 56666654 3345555555566778887654
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=2.2e-07 Score=107.90 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=166.8
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 635 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 635 ~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~-~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
...-+.|.+++|......+..|+..|.+.-+-+...+....+..|.- .|..+..... -+++.+ +..++ +-.+ .+
T Consensus 51 ~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls-~~alr-~~~r-~g 125 (1118)
T KOG1275|consen 51 GASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLS-KTALR-ATTR-QG 125 (1118)
T ss_pred ccccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeee-HHHhh-hhhc-cC
Confidence 34455788888888777888888777766555444444444443321 1221111111 111111 11111 0000 01
Q ss_pred ceeEEeccCC--CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE-ecCCCEEEEEEcCCeEEEE
Q 002471 714 YSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 714 ~~~~~~~~h~--~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~ll~~~~dg~I~i~ 790 (918)
.++..+.... .-...+... ...++.|+.-..+..+|+++.+..+...-....+.+ ..++..+++|...|+|.+-
T Consensus 126 l~~~~~~~~s~~~M~~~~~~~---~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 126 LPVFDFTCPSMTKMASSLHMG---PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred ceeecccCCCHHHHHHHhccC---CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEee
Confidence 1211111110 111112222 223447777888999999999888776644422333 3444677778889999999
Q ss_pred ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 791 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 791 D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
|.++.+.++++..|.+.|..+.. .|++|++|+.. -|+|||+|.-+....+... .++ .-+.|+|.
T Consensus 203 D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 203 DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGP-QFLRFHPS 276 (1118)
T ss_pred cCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCc-hhhhhccc
Confidence 99999999999999999986655 48999988743 4899999876444333321 111 34567776
Q ss_pred C-CEEEEEEcCCeEEEEE---CCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 861 Y-PSLLVIGCYQSLELWN---MSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 861 g-~~l~s~s~dg~I~vwd---~~~~~~~--~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. ..+++++..|.+.+-| +.+...- .+......+..+++++++..++.|..+|.|.+|.
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4 4688888999999988 4333222 3334445599999999999999999999999994
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=5.7e-06 Score=87.49 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=129.5
Q ss_pred CCCeEEEEeCCCCCceeEEeccC--CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC--ceEEEEecCC
Q 002471 700 FDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 775 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~ 775 (918)
.+|+|..||..+ ++.+....-- .....+.. .++++.++ +++.++.|+.||+.+++.+..+... .... ....+
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~-~~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGPGIGGPVATA-VPDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDG 76 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSSSCSSEEETE-EEETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEET
T ss_pred CCCEEEEEECCC-CCEEEEEECCCCCCCccceE-EEeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeecc
Confidence 368899999987 5555444321 12222112 22345555 6678999999999999988777642 1111 24456
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEe-cCCCC---CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 850 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l-~~h~~---~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 850 (918)
+.++++..++.|+.+|.++++.+..+ ..... .........++..++++..+ .|..+|++++ +.+........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCC
Confidence 77888888899999999999999884 33211 11222233337777777755 9999999988 44444433221
Q ss_pred c----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 851 K----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 851 ~----------i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. +..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1 1122222344 78888888854444999999763 2223333332 346777888888999999886
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2.3e-08 Score=114.74 Aligned_cols=201 Identities=15% Similarity=0.279 Sum_probs=147.8
Q ss_pred CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-c
Q 002471 669 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 747 (918)
Q Consensus 669 ~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-~ 747 (918)
..+..++|+.|....+|++|+-+.+.|++|+..|.|++|++.+ +.......+|...|+-|.-+.+|..++.+++... .
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 4566777888999999999999999999999999999999998 6677888899999999999999988776665554 6
Q ss_pred EEEEEcCC-CeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002471 748 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 748 I~iwdl~~-~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~---h~~~V~si~~spdg~~Las 822 (918)
.-+|++.. +...+.|. ...++.|+.....-+.|+......|||+.++.++.++. + ....-+++.|+|+..+++-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 78999865 23344443 34567777766666667777889999999987665532 1 2223367889998887753
Q ss_pred EeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 823 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 823 ~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
- -.+||++... .++.|.... ....-.|||.|..+++-+ .|||+++.+.+
T Consensus 1248 d----GvLWDvR~~~---aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 D----GVLWDVRIPE---AIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred C----ceeeeeccHH---HHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 2 2589998763 333333212 112236999999888866 48999887655
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=99.55 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=117.6
Q ss_pred EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----CceeEEeccCCCCeeEE
Q 002471 654 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHSASVMSL 729 (918)
Q Consensus 654 atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~----~~~~~~~~~h~~~V~sl 729 (918)
++.+.+-.|-+-|++++-. ..|. .++.|.++.|.-.+.+++.|+..|.|.++|++.. +.+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4555677888889887643 2333 5678999999998999999999999999999874 44555554 89999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCee---eEEeecCceEE-----EEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 730 DFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQM-----RFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 730 ~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~---~~~~~~~~~~v-----~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
.........|.+.+.+|+|++||++.-++ +..+.+++... .+.+..+.+++++.|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 87763344555888999999999998877 88888887654 45667789999999999999999999988877
Q ss_pred cC
Q 002471 802 QG 803 (918)
Q Consensus 802 ~~ 803 (918)
..
T Consensus 385 pf 386 (425)
T KOG2695|consen 385 PF 386 (425)
T ss_pred CC
Confidence 64
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=6.7e-07 Score=90.45 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=108.7
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeEeccCCCCeEEEEECCCCCEEEEEeC-----CC
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 702 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg 702 (918)
....++..|.++-.+-+.+--++.++++..||.+.+++.+... ....+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3444455666666666666677899999999999999987521 12222221112223333334444444421 23
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee----EEeecCceEEEEecCC-CE
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 777 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~sp~~-~~ 777 (918)
..++|+++..+..+.... ....|.+++-+|.-.+++++|+.||.|-+||.+..... +..+..+..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 466777765332222222 23349999999998999999999999999999987432 2234567778899876 57
Q ss_pred EEEEEcCCeEEEEECCC
Q 002471 778 YLAAAAENVVSILDAET 794 (918)
Q Consensus 778 ll~~~~dg~I~i~D~~t 794 (918)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 88999999999999765
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.58 E-value=1.2e-05 Score=92.05 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=125.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002471 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 757 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~ 757 (918)
...-....+.++|+|+.+++ +.||...||.... .. ... .+....++|...+ . +|+-...+.|.|+.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r-~k~----~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WR-NKA----FGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TE-EEE----EEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Cc-ccc----cCceeEEEEecCc-c-EEEEECCCeEEEEEcCccc
Confidence 34455789999999999988 4577788887432 11 111 2345568898843 3 4466668899997433333
Q ss_pred eeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 002471 758 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG- 836 (918)
Q Consensus 758 ~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~- 836 (918)
..+.+......-.+.. +.++....++.|.+||+.+++.+..+... .|..|.|+++|++++..+.+.+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334444332222222 55666666669999999999999998743 389999999999999999998777775432
Q ss_pred -----C--CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 837 -----S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 837 -----~--~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
+ ....+..+......|.+.+|..+ .|+..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 0 01123333322567888899876 45544444 7776 55666666666677888888888778888888
Q ss_pred cCCcEEEe
Q 002471 910 HDKFVKLW 917 (918)
Q Consensus 910 ~Dg~I~IW 917 (918)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 88888765
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=8.5e-07 Score=89.71 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=133.5
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCce------------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~------------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
|+.+.|+.+ ..|+++..++.+..+...++.+ .+.+..|.+.-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 444555433 3566666665555544333322 223333333333333334567899999999999999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+......+.+..-...-.+.++...++ +| .. +.+-.|+.- +..+
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i-~s---~~~g~~n~~------------------------------d~~~ 162 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SI-LS---GGCGNWNAQ------------------------------DNFY 162 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EE-ec---CCcceEeec------------------------------ccee
Confidence 8752111111111111112222333322 22 12 222233322 2233
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC-CCEEE
Q 002471 789 ILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT-YPSLL 865 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~-g~~l~ 865 (918)
+|+++-.+....-......|.+++-+|.-. ++++|++| .+-+||.+.. ...+..+..|+.+++.+.|||. +..|+
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchhee
Confidence 444433222111111223489999999666 56666667 8999999876 3556677889999999999995 57899
Q ss_pred EEEcCCeEEEEECCCCcEEE---Eccc-----CCCeEE--------------E-EEeCCCCEEEEEecCCcEEEeC
Q 002471 866 VIGCYQSLELWNMSENKTMT---LTAH-----EGLIAA--------------L-AVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 866 s~s~dg~I~vwd~~~~~~~~---~~~h-----~~~V~~--------------l-a~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++||.+..||..+.-+-. ...| .++|.+ + .|.--|..|++|++-+-|++++
T Consensus 241 t~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 241 TCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999987532110 0000 111111 1 2344567899999989998875
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=1.3e-05 Score=96.45 Aligned_cols=241 Identities=13% Similarity=0.155 Sum_probs=152.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---Cc
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---GY 714 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~---~~ 714 (918)
.+.|.++.|.-++.-|+.+..+|.|.+-|.++.. ......-...|.+++|+||...|+..+.+++|.+-+-.=. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4689999999999999999999999999877654 3333345678999999999999999998888776543210 01
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---EeecCceEEEEecCCCEEEEEEc----C-Ce
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAA----E-NV 786 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~sp~~~~ll~~~~----d-g~ 786 (918)
.+..-....+....+-|-.....+ -|+ .|.....+........ ....+...+.|.-||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 110001111223334443322111 111 2222222221111110 12345567899999888877432 3 78
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
|+|||.+ +..-.+-.....--.+++|-|.|.++++...+ .|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999988 43332222233445689999999999886432 699998765444444444445455699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCcE
Q 002471 863 SLLVI---GCYQSLELWNMSENKT 883 (918)
Q Consensus 863 ~l~s~---s~dg~I~vwd~~~~~~ 883 (918)
.|++. .....|++|-+.+...
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEE
Confidence 98884 3444699999877653
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.55 E-value=4.2e-05 Score=86.26 Aligned_cols=256 Identities=15% Similarity=0.163 Sum_probs=152.3
Q ss_pred ccCCCEEEEEe---------CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 647 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 647 spdg~~Latgs---------~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.||... ++.|.++++.++ ...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888877743 346789999998765544444 67789999999999999887 578999998763 2221
Q ss_pred -Eecc-------C---------CCCeeEEEEcCCCCeEEEEEeCCCcEEEEE----------------------------
Q 002471 718 -TFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYWS---------------------------- 752 (918)
Q Consensus 718 -~~~~-------h---------~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwd---------------------------- 752 (918)
+..+ - -+.-..+.|+||+..|++.--++..|+.+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2222 0 122356889999998876655555444443
Q ss_pred -------cCCCeeeEEe-e-------cCceEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEecC-CCCCe---
Q 002471 753 -------INNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 808 (918)
Q Consensus 753 -------l~~~~~~~~~-~-------~~~~~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 808 (918)
+.+++....- . .-...+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3333221100 0 012346788887745554432 2567778877654433322 22232
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeccCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 002471 809 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 877 (918)
Q Consensus 809 ~si~~s-pdg~-~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~-i~~sp~g~~l~s~s~d-----g~I~vwd 877 (918)
..+.|. +++. +|.....+ .|.+++...+. ...+......|.. +.+++++..|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355665 6666 44444444 68888886652 4455555566754 6788888777655543 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002471 878 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 878 ~~-~~~~~~~~~h~~~V~~la~spdg~~Lasgs 909 (918)
+. .+....+....+....+.|+|++++++-.+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 667666665555447999999999877544
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1.7e-06 Score=92.81 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=106.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----eeeEeccCCCCeEEEEECCCCCEEEEE---eCCCeEEEEeCCCC
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATS---SFDKTVRVWDADNP 712 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~----~~~~l~~h~~~V~~l~fspdg~~Lasg---s~Dg~V~Iwdl~~~ 712 (918)
.+..+.+++++++||++..++...++++.... ++..+. -...-+.+.|..+...+..+ ++...+.+|.+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 35556678888899988888887777765322 222222 22233445555555554444 4445556666553
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-C---ceEEEEecCCCEEEEEEcCCeEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+.+.+.||-..++.|+|+||+. +|++++.|..|||-....--.+..|-. + +..+++.++ ..|++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 45666779999999999999976 555999999999988776555555432 2 334444443 4478999999999
Q ss_pred EEECCCceEEEEec
Q 002471 789 ILDAETQACRLSLQ 802 (918)
Q Consensus 789 i~D~~t~~~~~~l~ 802 (918)
+||+++++++.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886653
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=6.9e-05 Score=76.20 Aligned_cols=255 Identities=14% Similarity=0.104 Sum_probs=133.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
-|++++.|++.|.+++.+++++.....+.....--......+++..|.+|+.|++.+..|.++ ..++...+.......+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 467899999999999999999987777764333222334566888999999999999999998 5566655544443334
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCee--eEEee--cCc--eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVFK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~~--~~~--~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
-+..+-...++ .+...|.|.--..+.... +..+. +++ ..++. +..+..++-||.+.-+| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 444456666555555421 11111 111 00111 23344455566666666 4455554333
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC----CCCEEEEE
Q 002471 803 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 867 (918)
Q Consensus 803 ~h~~~V~s-i~~s-pdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp----~g~~l~s~ 867 (918)
..++|.. -+-+ |....|+.+.++ .-.+|...++.. .+..- .+-....++. ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t---~~vy~---~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTT---LHVYL---SPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcE---EEEEe---CcccceeccCCCCcchhhhhhh
Confidence 2222211 1111 222333333333 344666655411 11110 0000112221 13456777
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCe---EEEE-----E-eC---CCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTMTLTAHEGLI---AALA-----V-ST---ETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~~~~~h~~~V---~~la-----~-sp---dg~~Lasgs~Dg~I~IWd 918 (918)
+.||++.|.-.+.. +.....|.+.+ ..+. | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88898888743322 12223333322 2221 1 22 34 577888999999986
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.7e-07 Score=95.73 Aligned_cols=233 Identities=12% Similarity=0.142 Sum_probs=161.5
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-CCcEEEEEcC
Q 002471 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 754 (918)
Q Consensus 678 ~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-Dg~I~iwdl~ 754 (918)
-|.+.|+.+.-. -.+++++++.||.++.|.-.. +-..+..+..|...|.+++.+-++ .+++|.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 367777766544 456999999999999997653 223456677888999999988875 57778666 9999999998
Q ss_pred CCeeeEEeec--CceEEEEecCCC----EEEEEE-cCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 755 NGSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 755 ~~~~~~~~~~--~~~~v~~sp~~~----~ll~~~-~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
+-..+.-++. -...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+.+.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8765543332 112223322222 233332 37899999987653 33444559999999999999999988887
Q ss_pred C-eEEEEECCC-CC-----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-----
Q 002471 826 D-SVRVWTVGS-GS-----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT----- 887 (918)
Q Consensus 826 d-~I~iwdl~s-~~-----------~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~----- 887 (918)
. .|..|.... .. ....+..+........++.|+|++..+.+.+.|..|+++++++++++...
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 7 899998863 10 01112233334566789999999999999999999999999998754110
Q ss_pred ----------------------------ccCC-CeEEEEEeCCCCEEEEEecCC
Q 002471 888 ----------------------------AHEG-LIAALAVSTETGYVASASHDK 912 (918)
Q Consensus 888 ----------------------------~h~~-~V~~la~spdg~~Lasgs~Dg 912 (918)
.|.. .-+.++|+..+++|+.|+-=|
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 1222 234678888899888776433
No 316
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.52 E-value=6.9e-05 Score=82.40 Aligned_cols=268 Identities=14% Similarity=0.108 Sum_probs=136.5
Q ss_pred EEEccCCCEEEEEeC-CC--cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEec
Q 002471 644 CHFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 644 l~fspdg~~Latgs~-Dg--~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
=+|..||+.|+.++. || .+++.|+++++....-.+.........++++++.|+....+..|+-.|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 357889976665554 54 566778888775554443323333566778888887776677899999998 44445555
Q ss_pred cCCCCeeEEEEcCC-CCeEEEEEe----------------------CCCcEEEEEcCCCeeeEEeecC--ceEEEEecCC
Q 002471 721 GHSASVMSLDFHPN-KDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 775 (918)
Q Consensus 721 ~h~~~V~sl~fsp~-~~~ll~sgs----------------------~Dg~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~ 775 (918)
.....+-...|..+ +..+++.+- -.+.|...|+.+++....+... ...+.|+|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55666655666422 222332211 1345677788888766666544 3678899998
Q ss_pred CEEEEEEcCC-----eEEEEECCC-ceEEEEecCCC--CCeEEEEEcCCCCEEEEEe-----CC-eEEEEECCCCCCcce
Q 002471 776 GRYLAAAAEN-----VVSILDAET-QACRLSLQGHT--KPIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 776 ~~ll~~~~dg-----~I~i~D~~t-~~~~~~l~~h~--~~V~si~~spdg~~Las~s-----~d-~I~iwdl~s~~~~~~ 841 (918)
..+++-|-+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.--+ .+ .|.-+|+.+++. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 8888877644 124554332 23333333332 2344456899999555432 23 577788887643 22
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCC-----------CeE
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LIA 894 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg----------------~I~vwd~~~~~~~~~~~h~~-----------~V~ 894 (918)
+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=-
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2222 1344555678888665544432 56778888877664444432 123
Q ss_pred EEEEeCCCCEEEEEe-cCCcEEEe
Q 002471 895 ALAVSTETGYVASAS-HDKFVKLW 917 (918)
Q Consensus 895 ~la~spdg~~Lasgs-~Dg~I~IW 917 (918)
...|+||+++|+..| ..|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 578999999866554 57776665
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.50 E-value=2.2e-05 Score=81.43 Aligned_cols=180 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-------CCCCeEEEEECCC------CCEEEEEeCCCeEEE
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPS------MPRLATSSFDKTVRV 706 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~V~I 706 (918)
.=+-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|.+- ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45678999999999999999999999987533 333322 2356777777652 225777778888888
Q ss_pred EeCCC----CCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCc----------EEEEEcCCCeeeEEeecCceEE
Q 002471 707 WDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGE----------IRYWSINNGSCTRVFKGGTAQM 769 (918)
Q Consensus 707 wdl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~----------I~iwdl~~~~~~~~~~~~~~~v 769 (918)
|-+.. +......|. .+...|.++.|+|...-|++.|..... +..|.+-++.....
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk-------- 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK-------- 195 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE--------
Confidence 77632 122223322 357789999999997766655554432 33333322221110
Q ss_pred EEecCCCEEEEEEcCC------eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 770 RFQPHLGRYLAAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 770 ~~sp~~~~ll~~~~dg------~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
.+....|+ +..+|.+-+.+...........|..+..+|||.+||+...+ .|.+|++-+-
T Consensus 196 --------~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 196 --------QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --------EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 01111111 11233332222222222356789999999999999999988 9999999654
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3.3e-06 Score=97.58 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=127.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.+.+.|++++ +++|+.|+.+|.|++++.... . .+...|+.. .-+|.++++|+.||+|.|..+.++. ...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~-~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD-EIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-cce
Confidence 5678888887 569999999999999997633 2 333344433 5589999999999999999998743 333
Q ss_pred EeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCC---Ce--eeEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002471 718 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 788 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~---~~--~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 788 (918)
.+. ...++.+|+++|+ ....+++|+.-| +.++.-+- .. ....-.|.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 333 5578999999998 223455888888 77765321 11 223334566667765 5678888888899
Q ss_pred EEECCCceEEEEecCCCCCe------EEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 789 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 789 i~D~~t~~~~~~l~~h~~~V------~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
+||+.+...+..+......+ ..+.|.+ ...|+.|-.|+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEe
Confidence 99999988877765433332 3567765 456777888889998887
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=6.1e-05 Score=88.60 Aligned_cols=256 Identities=12% Similarity=0.112 Sum_probs=148.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCC------CeE--EEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------LIT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 721 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~ 721 (918)
+..+++++.++.|+-+|..+++.+..+..... .+. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 44677777889999999999988877654332 010 11111 226888888999999999998 454444432
Q ss_pred CCCC-----ee-EEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeeEEeecCc--------------------
Q 002471 722 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 766 (918)
Q Consensus 722 h~~~-----V~-sl~fsp~~~~ll~sgs---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 766 (918)
.... |. +..+. +..++ .++ .+|.|..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 11 12222 23333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCceEEEEecCCCCCe------EEEEEc----
Q 002471 767 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPI------DSVCWD---- 814 (918)
Q Consensus 767 ----~~v~~sp~~~~ll~~~~dg------------------~I~i~D~~t~~~~~~l~~h~~~V------~si~~s---- 814 (918)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+ ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0133444567788887654 79999999999998875321111 001111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 002471 815 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 872 (918)
Q Consensus 815 pdg~---~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~------------------s~dg~ 872 (918)
-++. ++++++.+ .+..+|.++++. +...... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~---~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKL---ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcE---eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1343 56666666 899999998843 3222111 11122333 233332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 873 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 873 I~vwd~~~~~~~~~~~h~---------~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
|.-+|+.+++.+-..... .....-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 889999999887222111 1111111112456788888899888764
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=3.1e-05 Score=89.79 Aligned_cols=255 Identities=14% Similarity=0.094 Sum_probs=149.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCceeeEecc-CCCCeEEEE-------------------ECCCCCEEEEEe-CCCeEE
Q 002471 648 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVR-------------------FSPSMPRLATSS-FDKTVR 705 (918)
Q Consensus 648 pdg~~Latgs~-Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~-------------------fspdg~~Lasgs-~Dg~V~ 705 (918)
-||+||+.-.. ...|...+++..++...+.. ....+..++ +.+||+.+...+ ..+.|.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 55677777776666555442 112233333 344555443222 245666
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 782 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~ 782 (918)
+.|.++ .+....+.- ......+.++++++.+++++. ...++...+..+...+..|.-.. ...+..++++.++
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 777765 333333321 223456788899888876652 22345444444333333332111 1123445665554
Q ss_pred cCCeEEEEECCC-----ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEec
Q 002471 783 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 846 (918)
Q Consensus 783 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~---------~~~i~~~~ 846 (918)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34444444 45667899999999988877764 999999987532 11233333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EEcccCCCe-----EEEEEeCCCCEEEEEe
Q 002471 847 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLI-----AALAVSTETGYVASAS 909 (918)
Q Consensus 847 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~----------~~~~-~~~~h~~~V-----~~la~spdg~~Lasgs 909 (918)
. +..-...+|.++|..+.+.--|..|..||+.. ..++ .+..|-.+. ..=.-.+||+||++.+
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33344568899998888888899999999876 2233 233333222 1222367888888764
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=1.7e-07 Score=105.25 Aligned_cols=241 Identities=13% Similarity=0.152 Sum_probs=152.0
Q ss_pred CCCCeEEEEEccCC--CEEEEEeCCCcEEEEECCCCc--eeeEeccCCCCeEEEEECC-CCCEEEEEe----CCCeEEEE
Q 002471 637 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVW 707 (918)
Q Consensus 637 H~~~V~~l~fspdg--~~Latgs~Dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~Dg~V~Iw 707 (918)
.+..+.|+++.-+. -++++|..+|.|.+-.+.... ......+|...+++++|++ |.+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567888876644 478899999999998876322 2345567888999999998 556777773 26679999
Q ss_pred eCCCCC----ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeeEEeec-CceEEEEecCCCEEEEE
Q 002471 708 DADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 781 (918)
Q Consensus 708 dl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~-~~~~~~~~-~~~~v~~sp~~~~ll~~ 781 (918)
|+.+.- .......+......++||..+ ..++.+|.....|.++|++-. .....+.. .+..+.+.|....+++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 998631 111111224455668999866 456668988899999999832 22222222 34556778866777778
Q ss_pred EcCCeEEEEE-CCCceE-EEEecCCC----CCeEEEEEcCCCC-EEEEEeCC--eEEEEECCCCCC------cceEEE--
Q 002471 782 AAENVVSILD-AETQAC-RLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGSGSE------GECVHE-- 844 (918)
Q Consensus 782 ~~dg~I~i~D-~~t~~~-~~~l~~h~----~~V~si~~spdg~-~Las~s~d--~I~iwdl~s~~~------~~~i~~-- 844 (918)
..||.|.+|| .+.-+. +..+...+ ..+..++|+|... ++++...| +|++||+..... ...+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 8899999999 333322 22222112 2489999999666 77777777 899999864211 111111
Q ss_pred ---eccCC--CceEEEEEeCCC--CEEEEEEcCCeEEEEEC
Q 002471 845 ---LSCNG--NKFHSCVFHPTY--PSLLVIGCYQSLELWNM 878 (918)
Q Consensus 845 ---~~~~~--~~i~~i~~sp~g--~~l~s~s~dg~I~vwd~ 878 (918)
+...+ ..|.+..||+.. ...+++...-.+.-|++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 11222 457777777755 23444444444444444
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=5.8e-06 Score=96.41 Aligned_cols=179 Identities=20% Similarity=0.277 Sum_probs=138.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 728 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s 728 (918)
++..++.|+.-..+..+|+.+.+..+........|+-++. ++++|.+|...|+|.+-|.++ -+.+.++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 4557888888889999999998887777766656766665 678999999999999999998 7889999999999999
Q ss_pred EEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEee--cCceEEEEecCC-CEEEEEEcCCeEEEEECC---
Q 002471 729 LDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHL-GRYLAAAAENVVSILDAE--- 793 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~--- 793 (918)
+... | ++|++|+. |..|+|||++..+.+..+. .+..-+.|.|.- ..+++++..|.+.+.|..
T Consensus 223 fDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8886 3 35668765 5678999999887665543 233457778775 467777888999999943
Q ss_pred Cc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 794 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 794 t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
+. .-+..+......+..+++++++..++.+..+ .|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 32 2233333344569999999999999999888 9999973
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=1e-06 Score=64.55 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.6
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd 666 (918)
+++.++++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67889999999999999999999999999999999997
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.4e-05 Score=86.80 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=89.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
|...|.--+++..+++|+.|+.-|.|++|+-..+..... ..+-.+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344566667777889999999999999999776554333 2334555667778888888999999999999988753221
Q ss_pred ----eEE-eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002471 716 ----LRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (918)
Q Consensus 716 ----~~~-~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 755 (918)
+.. -..|...|++++|++++..++ +|+..|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 111 123788999999999988766 999999999988877
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=7.4e-05 Score=87.26 Aligned_cols=204 Identities=14% Similarity=0.259 Sum_probs=139.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002471 687 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 756 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg-----~I~iwdl~~~----- 756 (918)
+|++.+..+|.|+.+|.|.+.+-. -..++.+..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456788899999999988777653 3455777777777444555666656666766664 4999998753
Q ss_pred -eee---EEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECCC----ceEEEEecCCCCCeEEEEEcCCCCE-E
Q 002471 757 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 820 (918)
Q Consensus 757 -~~~---~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~si~~spdg~~-L 820 (918)
.|+ +.+. ....+++++.+...+++|-.+|.|.++..+- +....-......+|+.+.+..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 244 2222 1346688888889999999999999985321 1111112234678999999999985 6
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-ccCCCeEE
Q 002471 821 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAA 895 (918)
Q Consensus 821 as~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-~h~~~V~~ 895 (918)
+++....|.+|.+. ++. .....+..++..+.|..+++....|++++ +..|++||....... .+. +|...+..
T Consensus 188 Fv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 188 FVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 66666689999997 333 44566778888899999887666455444 457999998765433 555 55544433
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00011 Score=85.81 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=139.1
Q ss_pred cccccCccceeeeeeecCCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECCCCCEEEE
Q 002471 620 MDVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT 697 (918)
Q Consensus 620 ~d~~~~~s~~~~~~l~~H~~-~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~fspdg~~Las 697 (918)
|+...-|.++++...+.-.+ .|.| |++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+.......+|++
T Consensus 6 WrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~s 82 (933)
T KOG2114|consen 6 WRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFS 82 (933)
T ss_pred cceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEE
Confidence 33333334444433222233 4444 6778889999999999998873 44555778877777 444443334467888
Q ss_pred EeCCC-----eEEEEeCCCC-----Ccee---EEec----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC----C
Q 002471 698 SSFDK-----TVRVWDADNP-----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----G 756 (918)
Q Consensus 698 gs~Dg-----~V~Iwdl~~~-----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~ 756 (918)
.+.|+ .|+|||++.- ..++ +.+. ....++.+|+.+.+ -..+|.|-.+|.|.++.-+- +
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence 77765 4999999742 1233 2222 13467888888887 44666888999999985321 1
Q ss_pred e-e--eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 002471 757 S-C--TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 832 (918)
Q Consensus 757 ~-~--~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwd 832 (918)
. . ...-+.+++.+.+..++..++.+.....|.+|.+....+ ...+..|...+.|..|++...-|++++...|.+||
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 1 1 111245678888988888766667777888888874443 34466788889999998866557777777899999
Q ss_pred CC
Q 002471 833 VG 834 (918)
Q Consensus 833 l~ 834 (918)
..
T Consensus 242 sd 243 (933)
T KOG2114|consen 242 SD 243 (933)
T ss_pred CC
Confidence 86
No 327
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.34 E-value=0.00061 Score=78.69 Aligned_cols=240 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred CeEEEEEccCCCEEEEE-eCCC----cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCC-----------e
Q 002471 640 KVICCHFSSDGKLLATG-GHDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------T 703 (918)
Q Consensus 640 ~V~~l~fspdg~~Latg-s~Dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~ 703 (918)
.+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999998865 3333 59999999997765432111 123399999988877665433 3
Q ss_pred EEEEeCCCCCce-eEEeccCCCC--eeEEEEcCCCCeEEEEEeCCC---cEEEEEcCCC-----eeeEEeec--CceEEE
Q 002471 704 VRVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGDG---EIRYWSINNG-----SCTRVFKG--GTAQMR 770 (918)
Q Consensus 704 V~Iwdl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~-----~~~~~~~~--~~~~v~ 770 (918)
|++|++.++... ...+...... ...+..++++..+++...... .|++.|+..+ ........ ......
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888874333 3344443333 567889999998887665543 4888888874 22222221 222222
Q ss_pred EecCCCEEEEEEc----CCeEEEEECCCce---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCC
Q 002471 771 FQPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGS 837 (918)
Q Consensus 771 ~sp~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~si~~spdg~-~Las~s~d---~I~iwdl~s~~ 837 (918)
.. .++.++..+. .+.|...++.... ....+..+... +..+... +. +++....+ .|++|++..+
T Consensus 284 ~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~- 359 (414)
T PF02897_consen 284 DH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDG- 359 (414)
T ss_dssp EE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-T-
T ss_pred Ec-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCC-
Confidence 22 2555554443 3578888888765 23344445553 4455443 44 44444444 7999999722
Q ss_pred CcceEEEecc-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 002471 838 EGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 886 (918)
Q Consensus 838 ~~~~i~~~~~-~~~~i~~i~~sp~g~~l~s~s~d----g~I~vwd~~~~~~~~~ 886 (918)
.....+.. ..+.|..+...++...+...-.. .+|+.||+.+++...+
T Consensus 360 --~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 --KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp --EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred --cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23445555555666554443332 4899999999887643
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.7e-05 Score=91.85 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=124.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
...++|++++ ++.|+.|+.+|.|++++... .. ++...|... ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 67999999999999999874 32 444445544 33444 6679999999999998877654
Q ss_pred --EEeecCceEEEEecC-----CCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 002471 760 --RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 830 (918)
Q Consensus 760 --~~~~~~~~~v~~sp~-----~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~i 830 (918)
..|+..+..++++|+ .+.+++|+.-| +.++.-+-. +.-..+..-.++|.+|+|. |+++|-++++.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 456778899999998 36788888888 777654321 1111345567899999998 88999998889999
Q ss_pred EECCCCCCcceEEEeccCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 831 WTVGSGSEGECVHELSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 831 wdl~s~~~~~~i~~~~~~~~------~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
||+.+... +..+..... .-..+.|.++.+ ++.|+..+|+|..++.
T Consensus 184 yd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIKK 234 (846)
T ss_pred Eeccccce---eeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEec
Confidence 99987632 222221111 123456665543 4445566788887773
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.4e-05 Score=92.14 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=85.1
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 642 ICCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 642 ~~l~fspdg~~Latgs----~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
+-+.|+|...+||+++ ..|.|.||- ++|++-+... ..-.+++++|+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 3457899998998887 357888884 5565444332 122367799999988899998899999999886 44555
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
....|..+|..+.|+++|..++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 5667999999999999988665 99999999999875
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.28 E-value=0.00021 Score=76.38 Aligned_cols=191 Identities=13% Similarity=0.160 Sum_probs=135.8
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeeEEeecCc-----eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDAE 793 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~sp~~~~ll~~~~-----dg~I~i~D~~ 793 (918)
....++.+|.....++.+-.-|+ ..+||..+++....+.... ....|++++.+|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44568889977777777777665 6789999998887765432 24679999999998755 4799999999
Q ss_pred -CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ccCC
Q 002471 794 -TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCNG 849 (918)
Q Consensus 794 -t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------------------~I~iwdl~s~~~~~~i~~--~--~~~~ 849 (918)
+.+.+.++..|.-.-..+.+.|||+.|+++..+ .+.+.|..++ ..+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888888888778889999999877766432 2445555655 33333 3 3466
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCcE-EE-----EcccCCCeEEEEEeCCCCEEEEE-ecCCcEE
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENKT-MT-----LTAHEGLIAALAVSTETGYVASA-SHDKFVK 915 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg-------~I~vwd~~~~~~-~~-----~~~h~~~V~~la~spdg~~Lasg-s~Dg~I~ 915 (918)
..|..+++..+|..++..-..+ -|.+++....-. +. ...-.+.|-+|+++.++.+|++. -..+++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998666654443 355555444211 11 12345789999999999877554 4678899
Q ss_pred EeC
Q 002471 916 LWK 918 (918)
Q Consensus 916 IWd 918 (918)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=2e-06 Score=62.99 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.26 E-value=0.0012 Score=71.46 Aligned_cols=255 Identities=11% Similarity=0.116 Sum_probs=154.9
Q ss_pred CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEeCCCCCceeEEeccC---C---
Q 002471 660 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH---S--- 723 (918)
Q Consensus 660 g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~V~Iwdl~~~~~~~~~~~~h---~--- 723 (918)
+.|+|+|.++++.+-.+..-- .-.+..+|+++.+++++ ..-.|.+||..+- .....+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhee
Confidence 479999999998887776422 33466799999988763 2345999999873 222222211 1
Q ss_pred -CCeeEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEE
Q 002471 724 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 800 (918)
Q Consensus 724 -~~V~sl~fsp~~~~ll~s-gs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~ 800 (918)
.....+.++.+++++++. .+---.|.|.|+..++.+..+....+...+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122346777787766532 2234568899999999988887766555554444678899999999888877 4444322
Q ss_pred ----ecCCCCC-eEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccC----------CCceEEEEEeCCCCEE
Q 002471 801 ----LQGHTKP-IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 864 (918)
Q Consensus 801 ----l~~h~~~-V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~----------~~~i~~i~~sp~g~~l 864 (918)
|.....+ +..-.+...+. ++.....+.|+-.|+.... ......+..- .+..--+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1112222 22334444444 4444444488887876542 2222222110 1123346788877666
Q ss_pred EEEEcC--------C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEeC
Q 002471 865 LVIGCY--------Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~d--------g--~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~-~Lasgs-~Dg~I~IWd 918 (918)
++.-.. + .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665322 1 68888999999985555456688999998776 665544 578999986
No 333
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.24 E-value=1.1e-06 Score=58.27 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002471 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (918)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (918)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0017 Score=73.90 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.2
Q ss_pred EEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 662 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 662 V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-..+.+++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5556555555444444333 5667788888865554433 22455554441 2111111111133456888899888887
Q ss_pred EEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 741 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 741 sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
+...++.|.+.|..+.++...... ....+.+.++++.++++.. ++.+.++|..+.+...+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888887776653 4567899999988888776 689999999999888875544444 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 002471 816 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 888 (918)
Q Consensus 816 dg~~Las~s~d--~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~vwd~~~~~~~~~~-~ 888 (918)
+|..++.+..+ .|.++|........ ...........-..+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977766633 89999976542211 000011223345678899999987777655 48999999998887442 1
Q ss_pred cCC-CeEEEEEeCCCCEEEEEecC-CcEEE
Q 002471 889 HEG-LIAALAVSTETGYVASASHD-KFVKL 916 (918)
Q Consensus 889 h~~-~V~~la~spdg~~Lasgs~D-g~I~I 916 (918)
-.. ....+.++|+|+++...... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 111 56778899999988777433 44443
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00012 Score=83.59 Aligned_cols=190 Identities=13% Similarity=0.242 Sum_probs=123.7
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeeEE--eecCceEEEEecCCCEEEEEEc-CC-
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 785 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D---g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ll~~~~-dg- 785 (918)
+.....+..-...+..-+|++++..+.+..-.. ..|+++|+++++.... +.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555566777788999988876554333 3499999998865444 4566677889999988887765 44
Q ss_pred -eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002471 786 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 860 (918)
Q Consensus 786 -~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~ 860 (918)
.|+++|+..+.... +....+.-+.-.|+|||++|+..++. .|.++|.+.... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67888988877443 44333444467899999988877655 577777765532 222222232336789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 861 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 861 g~~l~s~s~d-g--~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 477788877664433333333444455555555443
No 336
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=2.1e-06 Score=90.02 Aligned_cols=126 Identities=20% Similarity=0.282 Sum_probs=99.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-----ceeeEeccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~-----~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~V~Iwdl~ 710 (918)
..+.|.++.|.-.+.+++.|+..|.|.++|+... .+...+ -|...|+++..-. ++.+|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567999999998999999999999999999743 333334 4888999998877 78899999999999999998
Q ss_pred CCCce---eEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeec
Q 002471 711 NPGYS---LRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKG 764 (918)
Q Consensus 711 ~~~~~---~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 764 (918)
- .++ +..+.||...-.-+-++-+ .+.+|++++.|...|||.++.+..+.+++.
T Consensus 330 ~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 A-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred h-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 5 444 8888888765444444322 234666899999999999999998887654
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=0.0014 Score=74.76 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=70.3
Q ss_pred EEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEE
Q 002471 828 VRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 906 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~La 906 (918)
.++|++...+ ..++... -.....+.+++++|+...|+.|+.||.|.+||...+... .....-.++.++|+|+|.+|+
T Consensus 238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEE
Confidence 5677775432 2333222 234678999999999999999999999999999877544 334556789999999999999
Q ss_pred EEecCCcEEEeC
Q 002471 907 SASHDKFVKLWK 918 (918)
Q Consensus 907 sgs~Dg~I~IWd 918 (918)
+|+.-|.|.+||
T Consensus 316 V~s~qGelQ~FD 327 (545)
T PF11768_consen 316 VGSEQGELQCFD 327 (545)
T ss_pred EEcCCceEEEEE
Confidence 999999999997
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.19 E-value=0.00023 Score=86.25 Aligned_cols=226 Identities=13% Similarity=0.170 Sum_probs=133.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
.+.|.++.|.-+..-|+.+..+|.|.+-|..+. .+.....-...|.+++|+||...+. ..+.+.+|.+-+- +...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEec-cccch
Confidence 468999999999999999999999999988763 2333334567899999999977544 5555566655332 12211
Q ss_pred EEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc----------eEEEEecCCCCCeEEEEEcCCCCEEEEEe-----
Q 002471 760 RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVS----- 824 (918)
Q Consensus 760 ~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~si~~spdg~~Las~s----- 824 (918)
....... .-. ..+.++.++....=.-|....+ +.......-.+.=++|+|--||.++++..
T Consensus 144 ~E~~L~~---d~~-~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA---DDE-RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc---ccc-cccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1111000 000 0112223332221111111111 10000001112235689999999998833
Q ss_pred C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEEE
Q 002471 825 E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 896 (918)
Q Consensus 825 ~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~vwd~~~~~~~----~~~~h~~~V~~l 896 (918)
. ..|+|||.+ + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+.-+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 279999976 2 111111122344568899999999988754 457999986654432 233334459999
Q ss_pred EEeCCCCEEEE---EecCCcEEEe
Q 002471 897 AVSTETGYVAS---ASHDKFVKLW 917 (918)
Q Consensus 897 a~spdg~~Las---gs~Dg~I~IW 917 (918)
+|+.++.+||. ......|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4444459998
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.19 E-value=0.00063 Score=80.12 Aligned_cols=225 Identities=13% Similarity=0.156 Sum_probs=129.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC--eEEEEECC--CCCEEEEEe---------CCCeEEEEeCCCCCceeE
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSP--SMPRLATSS---------FDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~V~Iwdl~~~~~~~~ 717 (918)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .+|.|..+|..++ +.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG-~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG-KLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC-ceee
Confidence 57888888999999999999998887644321 01111112 124555554 3678999999884 4443
Q ss_pred Eecc-CCC-------------------Cee-EEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCCee
Q 002471 718 TFMG-HSA-------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNGSC 758 (918)
Q Consensus 718 ~~~~-h~~-------------------~V~-sl~fsp~~~~ll~sgs~Dg------------------~I~iwdl~~~~~ 758 (918)
.+.. ... .|+ ...+.+.++ +++.++.++ .|..+|+++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 3322 110 011 233333334 344565454 799999999999
Q ss_pred eEEeecCce---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE
Q 002471 759 TRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 759 ~~~~~~~~~---------~v~~s----p~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las 822 (918)
+..+..... ...+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +.+++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~ 344 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLG 344 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEc
Confidence 887753211 01111 1222 4667778999999999999998875421 11223333 222221
Q ss_pred E-----------------eCC-eEEEEECCCCCCcceEEEeccCC--------CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 823 V-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 823 ~-----------------s~d-~I~iwdl~s~~~~~~i~~~~~~~--------~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
. ..+ .|.-+|+.+++ .+....... .........-.+..|++++.|+.|+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 1 112 67777777763 232222110 111111112255678999999999999
Q ss_pred ECCCCcEE
Q 002471 877 NMSENKTM 884 (918)
Q Consensus 877 d~~~~~~~ 884 (918)
|..+++++
T Consensus 422 d~~tG~~l 429 (488)
T cd00216 422 DATTGKEL 429 (488)
T ss_pred ECCCCcee
Confidence 99999988
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00053 Score=79.79 Aligned_cols=181 Identities=8% Similarity=-0.041 Sum_probs=114.0
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCC
Q 002471 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~ 805 (918)
.++|..+..+.-..+.+.++|.++.+....+. +....+.++++++++++++. ..++...+..+...+..+.-
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-- 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-- 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--
Confidence 44554444444445677788888777666544 23345788899999888863 23455555444332222221
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc
Q 002471 806 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 882 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s~d~I~iwdl~s~~--~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~vwd~~~~~ 882 (918)
..+. .+.++|++... ..++|.++|.++.. ....+..+. -....+.|.++|||+++++++. +.+|.|+|+.+.+
T Consensus 279 ~~ie--a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 279 ARIE--EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHHH--HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 1111 34467886665 34489999998710 112333333 3677889999999999888876 6799999998865
Q ss_pred E------------EEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 883 T------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 883 ~------------~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
. +.-..-.-.-...+|+.+|....|---|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 3 11111123344568899988777888899999996
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.002 Score=65.92 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeE-
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 728 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~s- 728 (918)
..+++.|+..+.+.-.|..+++.+.+-.- ...|.+-+.- -|+.++.|+..|.+++.++.++.. +..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence 35777888888888888888877655331 2223332222 467899999999999999998433 3333321 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---EEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 729 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 729 l~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
....+++ .+|+.++.|++.+..|.++..++.+.+.+.. .-++.+-.+.++++...|.|.-...+..
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2233444 4778999999999999999999988764332 2345565566777777666655554443
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0042 Score=67.41 Aligned_cols=237 Identities=14% Similarity=0.162 Sum_probs=143.1
Q ss_pred EEEEEccCCCEEEEEe----------CCCcEEEEECCCCceeeEeccCCC-------CeEEEEECCCCCEEEEEeC--CC
Q 002471 642 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 702 (918)
Q Consensus 642 ~~l~fspdg~~Latgs----------~Dg~V~iwd~~~~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg 702 (918)
-.+..+||++.+++++ ..-.|.+||..+......+.-..+ ....+.++.|++++++... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466789999888754 344799999999888776653322 1234577888888877644 45
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeeEEe----ecCc----eEEEEec
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~-~~~~~~~~----~~~~----~~v~~sp 773 (918)
.|.|.|+.. ++.+..+.. .+ |..+ .|.++.-|.+-|.||.+....+. .|+..... .... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~~-PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEIDT-PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEEG-TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-CceeeeecC-CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688899987 555555442 22 2222 23333335577779999998887 44443221 1111 1233455
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEE
Q 002471 774 HLGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRV 830 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~si~~spdg~~Las~s--------~d---~I~i 830 (918)
.++.++..+.+|.|+-.|+....... .+... .+...-+++++....|++.- .+ .|-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66788889999999999987664322 22110 12233467777555444321 12 4777
Q ss_pred EECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 002471 831 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 887 (918)
Q Consensus 831 wdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~-~l~s~s-~dg~I~vwd~~~~~~~~~~ 887 (918)
||+.+. +.+..+.. ...+.++.++.+.+ +|++.+ .++.|.+||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 55655554 34577888888765 565554 4689999999999988433
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0011 Score=75.52 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=151.0
Q ss_pred CCeEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCCc
Q 002471 639 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 714 (918)
Q Consensus 639 ~~V~~l~fspdg~~L-atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~V~Iwdl~~~~~ 714 (918)
..-.+++++++++.+ ++...++.|.+.|..+.+....+..-. .-..++|+++++.++++.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 344578888888744 444456899999988777666655333 6778999999988877765 68888888887 44
Q ss_pred eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE-E----e--ecCceEEEEecCCCEEEEEEcC---
Q 002471 715 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V----F--KGGTAQMRFQPHLGRYLAAAAE--- 784 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~-~----~--~~~~~~v~~sp~~~~ll~~~~d--- 784 (918)
.+.....-..+ ..+++.|++..++++-..++.|.++|.......+ . . ......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444333334 8899999999888777789999999987776663 1 1 1234568899999977776654
Q ss_pred CeEEEEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 861 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g 861 (918)
+.+...|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 5999999999877765222222 56678999999977776443 88888887653333333333223335555555443
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0019 Score=68.16 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=115.4
Q ss_pred eeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeEeccC-CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 631 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 631 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
...+.+-.+.|..|+|+|+.+ ++|+....+.|..++. +++.++++.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456666677799999999755 5666667788888886 47777776643 36688999988887777666699999999
Q ss_pred CCCCCce--e---EEec-----cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeeEE-----------eec
Q 002471 709 ADNPGYS--L---RTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 764 (918)
Q Consensus 709 l~~~~~~--~---~~~~-----~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~---~~~~~~-----------~~~ 764 (918)
+...... . ..+. .+...+-.|+|.+.++.++++. +..-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542221 1 1111 2445689999999988888554 455566666553 111111 112
Q ss_pred CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002471 765 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 831 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~s~d~I~iw 831 (918)
....+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ..-..|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888777666 56788888 6666655443222 24678999999987666544455544
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00048 Score=78.80 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=123.7
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEeC
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG 744 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs~ 744 (918)
+.....+..-...+..-+|++++..++..+. . ..|.++|++++... +..+.++ -....|+|||..++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECC
Confidence 4555555555667788899999987665532 2 45999999874432 2333344 3447899999999988888
Q ss_pred CCc--EEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCC
Q 002471 745 DGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 745 Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg 817 (918)
||. |+++|+..+...+.. .+....-.|+|+|..++.++.. | .|.++|.+......... ....-..-.|+|||
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCC
Confidence 876 566677766643311 2233456799999998888763 3 57778888775533222 22222277899999
Q ss_pred CEEEEEeC--C--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 818 ELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 818 ~~Las~s~--d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
++|+..+. + .|.++|+.++.. +..+. .......-.|.++++.++..+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 98887773 3 477777776643 22221 122333446777777766655443
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.001 Score=76.31 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=116.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEE-eCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iw-dl~~~ 712 (918)
+-...-....+.++|+|++++++ .||...||.....+.... +.....+|...+ .+|+-...++|.|+ ++++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence 33445568899999999999995 588888888544444332 234567888854 56666668889996 4432
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC-ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 791 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~ll~~~~dg~I~i~D 791 (918)
...+.+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+. ..++|++
T Consensus 100 -~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEEEE
Confidence 22222221 123444433 44 443444 458999999999999999876 489999999777777764 4666655
Q ss_pred CCCc--------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002471 792 AETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 857 (918)
Q Consensus 792 ~~t~--------------~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 857 (918)
.... ..+.++ ...|.+.+|..+ .|+-.+...|+.+ ..| ....+..+ ..++.-+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkYl--~~G-e~~~i~~l---d~~~yllgy 240 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKYL--VNG-ETGIIAHL---DKPLYLLGY 240 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEEE--ETT-EEEEEEE----SS--EEEEE
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEEE--EcC-CcceEEEc---CCceEEEEE
Confidence 4322 333332 467999999966 4444444466663 222 11233332 445666667
Q ss_pred eCCCCEEEEEEcCCeEEEEECC
Q 002471 858 HPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 858 sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
.+....+++...|+.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 7766777777777777777654
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0013 Score=74.61 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=134.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CC---
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---PG--- 713 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~---~~--- 713 (918)
.|+++.|.++..-|++|...|.|.||.+...+... ......-....|.+ + ...++.-.|-|+.. +.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 00001111111111 0 00011122333321 11
Q ss_pred --ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--c---------CceEEEEec-----CC
Q 002471 714 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQP-----HL 775 (918)
Q Consensus 714 --~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~---------~~~~v~~sp-----~~ 775 (918)
.+...+....++|++++.+.-| +++.|..+|.+.|.|+|....+..-. . .+.++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2334455567999999998554 78899999999999999887765521 1 233455441 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002471 776 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 823 (918)
Q Consensus 776 ---~~ll~~~~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~si~-~spd---------------------g~~Las~ 823 (918)
-.+++|...|.+.+|.+. . +. .......+.+.|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888889999999764 1 21 1222224566666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCcceEEEeccCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc----cCCCe
Q 002471 824 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 893 (918)
Q Consensus 824 s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~-----sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~----h~~~V 893 (918)
++..+||+...+. +..+...........+.+ ...+..|++...+|.|++|.+..-+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223333444 235677888899999999999998877 2222 22345
Q ss_pred EEEEEeCCCCEEEEEec
Q 002471 894 AALAVSTETGYVASASH 910 (918)
Q Consensus 894 ~~la~spdg~~Lasgs~ 910 (918)
...+|+++|.+++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56777888887766554
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.00 E-value=0.0016 Score=68.77 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=110.1
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
.+.+-...+..|.|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999974 77777764 345678887655444433347889998873
Q ss_pred Cc------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eccCCCceE
Q 002471 794 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 853 (918)
Q Consensus 794 t~------~~~~~l~-----~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s--~~~~~~i~~------~~~~~~~i~ 853 (918)
.. .....+. .+...+..++|++.++.|+++-+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111111 244568999999987766666655 556666543 111111111 112234578
Q ss_pred EEEEeCCCCEEEEE-EcCCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 854 SCVFHPTYPSLLVI-GCYQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 854 ~i~~sp~g~~l~s~-s~dg~I~vwd~~~~~~~---~~~~--h-----~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+.++|....|++- ..+..|.++| ..|+.+ .+.. | -...-.|+|+++|++. ..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 89999976655555 4556899999 556555 2222 1 1246789999998654 44566666655
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0015 Score=73.61 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=131.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cC----------------CCCeEEEEECCCCCEEEEEeC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH----------------SSLITDVRFSPSMPRLATSSF 700 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h----------------~~~V~~l~fspdg~~Lasgs~ 700 (918)
...+....|||+|+.||... ++.|+++++.++.....-. +. -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67899999999999999885 6899999987664332221 20 122356789999999987643
Q ss_pred C-Ce-----------------------------------EEEEeCCCCCc-eeEEe---ccCCCCeeEEEEcCCCCeEEE
Q 002471 701 D-KT-----------------------------------VRVWDADNPGY-SLRTF---MGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 701 D-g~-----------------------------------V~Iwdl~~~~~-~~~~~---~~h~~~V~sl~fsp~~~~ll~ 740 (918)
| .. +.|+|+.++.. .+... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 2 21 33344443221 11111 123456778889888774443
Q ss_pred -EEeCC---CcEEEEEcCCCeeeEEeec-------CceEEEEe-cCCCEEEEEE-cCC--eEEEEECCCceEEEEecCCC
Q 002471 741 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 805 (918)
Q Consensus 741 -sgs~D---g~I~iwdl~~~~~~~~~~~-------~~~~v~~s-p~~~~ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~ 805 (918)
....+ ..|.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3467778877665443321 12345554 6666655544 455 6777788777644 454445
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc
Q 002471 806 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 806 ~~V~s-i~~spdg~~La-s~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~ 869 (918)
-.|.. +.|+++++.|+ ++..+ .|...++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56644 67888877444 44432 4555666512 334445544444468999999998887654
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.98 E-value=0.0056 Score=72.54 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=112.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeE---E-------EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
+.+|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..|+.++.|+.|...|.++ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4577777788899999999999888765321 1111 1 122 234677888899999999998 444433
Q ss_pred ecc--CC--CCeeE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeeEEeecCc----------------------
Q 002471 719 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 766 (918)
Q Consensus 719 ~~~--h~--~~V~s-l~fsp~~~~ll~sgs-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 766 (918)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|+.+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 321 11 11111 1111 234443222 26899999999998876643210
Q ss_pred -------------eEEEEecCCCEEEEEEcC------------C----eEEEEECCCceEEEEecCCCCCe---------
Q 002471 767 -------------AQMRFQPHLGRYLAAAAE------------N----VVSILDAETQACRLSLQGHTKPI--------- 808 (918)
Q Consensus 767 -------------~~v~~sp~~~~ll~~~~d------------g----~I~i~D~~t~~~~~~l~~h~~~V--------- 808 (918)
..+.+.+..+.++.+... + .|.-.|+++++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 123566666777766521 1 67888999999988876522211
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002471 809 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 809 ~si~~spdg~---~Las~s~d-~I~iwdl~s~~~ 838 (918)
.-+.+..+|+ .++.+..+ .+++.|.++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1222334666 66677777 899999988853
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.97 E-value=0.0049 Score=66.78 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=124.0
Q ss_pred cCCCEEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE--------
Q 002471 648 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 718 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~-------- 718 (918)
..++.|+.|+.+| |+++++. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999888 9999983 333333332 22399999999877777665 599999998752211100
Q ss_pred -----eccCCCCeeEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeeEEee--cCceEEEEecCCCEEEEEEcC
Q 002471 719 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 719 -----~~~h~~~V~sl~--fsp~~~~ll~sgs~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 784 (918)
.......|..++ -...+...++ +.....|.+|.+... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1223344443 334568888887653 3344443 455667777 44555554 5
Q ss_pred CeEEEEECCCceEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h------------~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
+...++|+.++.....+... ..++..+.. +++.+|++. ++.-.+.|. .|.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~fv~~-~G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGVFVNK-NGEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEEEEcC-CCCcCc-ccEEEc-CCch
Confidence 56888899877554433211 123333333 345666543 333333344 332222 111211 2344
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
..+++ ..++|++.+. +.|.||++.+++++
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 45555 3456776665 56999999999887
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00011 Score=84.93 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.2
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5569999999999999999999999988877777778899999999999999999999999999999876
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.92 E-value=0.0033 Score=68.09 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=123.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE---------
Q 002471 690 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 760 (918)
Q Consensus 690 pdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~--------- 760 (918)
..++.|+.|+.+| |.++++.......+... ...|..|...++-+.+++-+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577999999999 99999943333333332 23399999999876666443 5999999987654333
Q ss_pred ------EeecCceEEEEe----cCCCEEEEEEcCCeEEEEECCCc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 761 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 761 ------~~~~~~~~v~~s----p~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
.+.....+..|. ..+...+++.....|.+|..... +...++. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222232 44566777777778888876653 3444444 45778899998 677888888
Q ss_pred CeEEEEECCCCCCcceEEEeccCC---------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEE
Q 002471 826 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 895 (918)
Q Consensus 826 d~I~iwdl~s~~~~~~i~~~~~~~---------~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~ 895 (918)
+...+.|+.++.... +....... .....+.--+++.+|++. +..-.+.|....... ....-...+..
T Consensus 157 ~~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCceE-EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 889999998764322 22111111 112222233345555442 333334444332221 11122334556
Q ss_pred EEEeCCCCEEEEEecCCcEEEeC
Q 002471 896 LAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 896 la~spdg~~Lasgs~Dg~I~IWd 918 (918)
+++.. .||+..+.+ .|.||+
T Consensus 234 ~~~~~--pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 234 VAYSS--PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEC--CEEEEECCC-EEEEEE
Confidence 66533 377776654 488874
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.014 Score=67.04 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=99.8
Q ss_pred cEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC-----ceeEEeccCCCCeeEEEEcCCC
Q 002471 661 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 735 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-----~~~~~~~~h~~~V~sl~fsp~~ 735 (918)
.|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+.... ..+....-....|..+.+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 45666666655589999999875 466677789999999996311 0111111112222222333233
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eeEEe---ecCce----------EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 736 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 736 ~~ll~sgs~Dg~I~iwdl~~~~-~~~~~---~~~~~----------~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
+++. ..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 234455444322221 11111 11000 012333444444445555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCC
Q 002471 802 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 861 (918)
Q Consensus 802 ~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~sp~g 861 (918)
. ..+++..+++||+|++||....+ .+.|++..-. +++.++... ......+.|.-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 24679999999999999988887 7777765332 334444333 3445566666543
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.0062 Score=66.58 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=129.1
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee-
Q 002471 686 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 763 (918)
Q Consensus 686 l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~- 763 (918)
..|.++...|+-+ -..+.|.-|+..++.. ..+. +...+.++.....+..|+ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3566666644444 4478888888875332 3333 333445555554445444 54 3556777776665533321
Q ss_pred -------cCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 764 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 764 -------~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
...+.+.+.+++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+....
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345777888666555433 134555565 45555555555566688999999997777666
Q ss_pred C--eEEEEECCC--CCCc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 002471 826 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 897 (918)
Q Consensus 826 d--~I~iwdl~s--~~~~--~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~vwd~~~~~~~-~~~~h~~~V~~la 897 (918)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 777777652 2111 12223333445666778888888776555554 99999999 6666 5555557888888
Q ss_pred Ee-CCCCEEEEEe
Q 002471 898 VS-TETGYVASAS 909 (918)
Q Consensus 898 ~s-pdg~~Lasgs 909 (918)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 84 4555544433
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.81 E-value=0.0023 Score=71.10 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCceeEEecc-CCCCeeEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eee-
Q 002471 703 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 759 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~---fsp~---~~~ll~sgs~----------Dg~I~iwdl~~~-----~~~- 759 (918)
.|+|.|..+ ...+..+.- ....|++++ |..+ ...+|+.|.. .|.|.++++... ++.
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 334433321 223344443 3322 1455555533 289999999984 222
Q ss_pred ---EEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002471 760 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 833 (918)
Q Consensus 760 ---~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 833 (918)
..+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1234455555544 566 555566899999988777 333222 123356666655 6688888765 6666644
Q ss_pred CCCCC-cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 002471 834 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 898 (918)
Q Consensus 834 ~s~~~-~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~-------~--~~~--~~~~h~~~V~~l---a~ 898 (918)
+.... ...+. -......++++.|-.++..++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 33211 12222 222355688888886667999999999999997753 2 222 223345667777 44
Q ss_pred eC--CCC------EEEEEecCCcEEE
Q 002471 899 ST--ETG------YVASASHDKFVKL 916 (918)
Q Consensus 899 sp--dg~------~Lasgs~Dg~I~I 916 (918)
.| .+. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 44 122 4778889998863
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.81 E-value=0.00012 Score=82.98 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=64.3
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
.....|.|++++|+.+.|+.|+.||.|.+||...+.. .+....-..+.++|+|+|..|++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 5678999999999999999999999999999876532 3334456689999999999999999999999999975
No 358
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.054 Score=56.83 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=150.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 715 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~ 715 (918)
.+.+.++.|+.+ +...+..+.-++|+|+.+......+.. -.+.-.++.. .|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 445677788754 788888888999999986544333221 1233444444 4889988887666889999886655
Q ss_pred eE--EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eeEEeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002471 716 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 790 (918)
Q Consensus 716 ~~--~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 790 (918)
.. .+......-..++.+ |+ ..+.+..|+-+.+.|+.... .+..+..+......++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 43 333334444567776 33 34466679999999997653 333343333334445555666666677778888
Q ss_pred ECCCceEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002471 791 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 867 (918)
Q Consensus 791 D~~t~~~~~~l~~-h~~~V~si-~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~ 867 (918)
|..+.+....+.. ....+.++ .|.-.+++......+ .+-+-|+.+.........+...+..-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8877664333322 11222222 222336666555555 6667777654332222222222222222222 12223333
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 868 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 868 s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
..+ ...+.|....+.. ...+....+.+++.+-+.+++.+...++.+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 222 3333444333322 2222223344555555666888888999999985
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.78 E-value=0.00047 Score=78.09 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=116.6
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCCeEEEEECC-----CC-
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 692 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l--~~------h~~~V~~l~fsp-----dg- 692 (918)
.|.+...++...++|++|+.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998655 9999999999999999876665542 22 345688998863 33
Q ss_pred --CEEEEEeCCCeEEEEeCCC-C-CceeEEe----ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec
Q 002471 693 --PRLATSSFDKTVRVWDADN-P-GYSLRTF----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 764 (918)
Q Consensus 693 --~~Lasgs~Dg~V~Iwdl~~-~-~~~~~~~----~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~ 764 (918)
-+|++|...|.+.+|.+.- . +.....+ ..+.+.|.. |..+|..+++.......
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3688888899999997751 1 1110000 012222222 23334443332111100
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 838 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----pdg~~Las~s~d-~I~iwdl~s~~~ 838 (918)
....+.--.....+++.+.+..++++...+.+..+........+..+++- ..+..|++...+ .|++|.+-.-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999998887776655332333445553 245567777777 9999999665
Q ss_pred cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 002471 839 GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQ--SLELWN 877 (918)
Q Consensus 839 ~~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd 877 (918)
+.+..+... ...+..+.++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 344433332 12345567788888776665543 344443
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=1.2e-05 Score=90.86 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=132.3
Q ss_pred CCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCCCce-eEEeccCCCCeeEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 002471 681 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 753 (918)
Q Consensus 681 ~~V~~l~fspdg--~~Lasgs~Dg~V~Iwdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~sgs----~Dg~I~iwdl 753 (918)
..+.|+++.-+. .++++|..+|.|.+-.++.+... .....++...+++++|.+-+..+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346677765543 46788889999999988764433 4455678899999999987666775653 3677999999
Q ss_pred CCCee--e--EEe----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002471 754 NNGSC--T--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASV 823 (918)
Q Consensus 754 ~~~~~--~--~~~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~sp-dg~~Las~ 823 (918)
.++-. . ..| ..+...++|..+.+.+++|.....+.++|++-. .....+ .+..+..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 87621 1 112 224557888877778888888899999999833 222111 334577788888 78899988
Q ss_pred eCCeEEEEE-CCCCCCcceEEEeccCC----CceEEEEEeCCCCE-EEEEEcC-CeEEEEECCC
Q 002471 824 SEDSVRVWT-VGSGSEGECVHELSCNG----NKFHSCVFHPTYPS-LLVIGCY-QSLELWNMSE 880 (918)
Q Consensus 824 s~d~I~iwd-l~s~~~~~~i~~~~~~~----~~i~~i~~sp~g~~-l~s~s~d-g~I~vwd~~~ 880 (918)
.++.|.+|| .+..+ ..+..+.... ..+..++|.|...- +++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 33322 1121121222 24888999996543 4444444 5899999853
No 361
>PRK10115 protease 2; Provisional
Probab=97.70 E-value=0.071 Score=65.35 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=123.7
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVW 707 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~D-----g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iw 707 (918)
-.+..+.|||||++|+.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+.+..+ ..|++|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346778899999988876432 3688899988764332222222 459999999877665442 368888
Q ss_pred eCCCCC-ceeEEeccCCCCee-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeeEEeec-CceEEEEecCCCEEEE
Q 002471 708 DADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLA 780 (918)
Q Consensus 708 dl~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~--Dg~I~iwdl~--~~~~~~~~~~-~~~~v~~sp~~~~ll~ 780 (918)
++.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence 888742 22333433333333 33334466766654433 4678999853 3332222221 1111222233345554
Q ss_pred EEcC----CeEEEEECCC-ceEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEec-cCC
Q 002471 781 AAAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNG 849 (918)
Q Consensus 781 ~~~d----g~I~i~D~~t-~~~~~~l~~h-~-~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~-~~~ 849 (918)
.+.. ..|...++.. ++. ..+..+ . ..|..+.+.. +.++++...+ .|++++...+ .+..+. ...
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~ 358 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDP 358 (686)
T ss_pred EEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCC
Confidence 4432 2444445542 222 223333 2 3678888873 3455555545 4666665432 222222 112
Q ss_pred CceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 002471 850 NKFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 884 (918)
Q Consensus 850 ~~i~~i~~s--p~g~-~l~s~s~d---g~I~vwd~~~~~~~ 884 (918)
..+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 223333344 3444 33333332 48899998877643
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.67 E-value=0.019 Score=66.27 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=120.5
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCC----------C
Q 002471 683 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 746 (918)
Q Consensus 683 V~~l~fspdg~~Lasg-s~Dg----~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~D----------g 746 (918)
+..++++||+++||.+ +..| .|+|+|++++ ..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999998866 3333 5999999984 4333 32321 122399999988888776444 2
Q ss_pred cEEEEEcCCCeee--EEeec--C---ceEEEEecCCCEEEEEEc---C-CeEEEEECCCc-----eEEEEecCCCCCeEE
Q 002471 747 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 810 (918)
Q Consensus 747 ~I~iwdl~~~~~~--~~~~~--~---~~~v~~sp~~~~ll~~~~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~s 810 (918)
.|++|++.+.... ..|.. . ...+..+.++.++++... + ..|++.|+..+ ...............
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888776422 33332 2 345778889888777554 2 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CCc
Q 002471 811 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 882 (918)
Q Consensus 811 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~-~~~ 882 (918)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444443 566677776643222334444444333333444555666555443 79999999 555
Q ss_pred EEEEcc-cCCCeEEEEEeCCCC
Q 002471 883 TMTLTA-HEGLIAALAVSTETG 903 (918)
Q Consensus 883 ~~~~~~-h~~~V~~la~spdg~ 903 (918)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 334455555555544
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.65 E-value=0.0089 Score=72.40 Aligned_cols=213 Identities=9% Similarity=0.111 Sum_probs=128.9
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCC-eeEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eeE--
Q 002471 692 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR-- 760 (918)
Q Consensus 692 g~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~sgs~Dg~I~iwdl~~~~--~~~-- 760 (918)
.++|+.. .....|+-.|++. ++.+..+..|... |..++-.. .....+ .|-.+..|+.||.|-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3344443 3467899999998 7888888877654 55554321 122233 57779999999998643 332
Q ss_pred --Eeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--
Q 002471 761 --VFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-- 834 (918)
Q Consensus 761 --~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~-- 834 (918)
.+.. ...|+ .....+++++|+.+|.|++||.........+.+-..+|.+|+.+.||++|++.+...+.|++..
T Consensus 571 ~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 571 SKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred ccccccCCCceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeee
Confidence 1111 22333 3445589999999999999995444444455677899999999999999999998877777752
Q ss_pred CCC---------------C--cceEEEec----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C
Q 002471 835 SGS---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N 881 (918)
Q Consensus 835 s~~---------------~--~~~i~~~~----------~~~~~i~~i~~sp---~g~~l~s~s~dg~I~vwd~~~---~ 881 (918)
.++ . .+.+..-. .....++...|+- .....++++....+.+|+++. +
T Consensus 650 ~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g 729 (794)
T PF08553_consen 650 DGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRG 729 (794)
T ss_pred cCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCC
Confidence 110 0 11111111 1112233445542 124466667778999999853 2
Q ss_pred --cEEEEcccCCCeEEEE--EeCCCCEEEE
Q 002471 882 --KTMTLTAHEGLIAALA--VSTETGYVAS 907 (918)
Q Consensus 882 --~~~~~~~h~~~V~~la--~spdg~~Las 907 (918)
.+..+......|.+-. |..+.++|++
T Consensus 730 ~~~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 730 KKDPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CCCceEEEEcCCceEEccceeCCCCcEEEE
Confidence 2335555555665544 3445444444
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.015 Score=66.67 Aligned_cols=187 Identities=8% Similarity=0.100 Sum_probs=98.3
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec-----CceEE-E---Eec
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM-R---FQP 773 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~-----~~~~v-~---~sp 773 (918)
.|+||+.. +..+..+.-..+.|.++.|..+ ..|+ .-..||.+++||+.... ...+.. .+... . +..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47788776 3444444333378999999876 4455 55579999999987433 111111 11111 1 112
Q ss_pred CCCEEEEEEcCCeEEEEECCCce-EEEEe---cCCC-----C-CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002471 774 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHT-----K-PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t~~-~~~~l---~~h~-----~-~V~-si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 841 (918)
..+ +++...++.|++..-.... ....+ .... . .+. ...++.+....+....+ .+.+.+-....
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---- 211 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---- 211 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence 233 3444455555555333221 11111 1100 0 010 12344444444444444 55544432210
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-ccCCCeEEEEEeCCC
Q 002471 842 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTET 902 (918)
Q Consensus 842 i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-~h~~~V~~la~spdg 902 (918)
.+. ..+++..+++||++++|+.-..+|.+.|....-.+.+ .+. .-......+.|.-+.
T Consensus 212 --~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 212 --QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred --ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 011 2468999999999999999999999998876655544 222 223455566665544
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00023 Score=80.89 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=81.9
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
.+.-.-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++..|...|+ +++|.|||+.||+|-.||+|++.|++++
T Consensus 16 ~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 16 VMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred hhccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 33445578889999999999999999999999988 788899988888888 9999999999999999999999999985
Q ss_pred CceeEEeccCCCCeeEEEEcC
Q 002471 713 GYSLRTFMGHSASVMSLDFHP 733 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp 733 (918)
.............|.++.|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 544443334556677777763
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.56 E-value=0.068 Score=63.40 Aligned_cols=146 Identities=11% Similarity=0.057 Sum_probs=85.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeEeccCCCC-eEEEEECC---CCCEEEEEe------CCCeEEEEeCCCCCceeEEec
Q 002471 651 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSP---SMPRLATSS------FDKTVRVWDADNPGYSLRTFM 720 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~fsp---dg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~ 720 (918)
..|+.++.|+.|.-+|.++++.+......... -..+.-+| ++ .|+++. .+|.|+.+|.+++ +.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTG-KLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCC-ceeEecc
Confidence 46777888999999999999988776531110 00111112 34 455543 2688999999884 3332221
Q ss_pred c-C------------------------------CCCee-EEEEcCCCCeEEEEEeC----CC-----------cEEEEEc
Q 002471 721 G-H------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWSI 753 (918)
Q Consensus 721 ~-h------------------------------~~~V~-sl~fsp~~~~ll~sgs~----Dg-----------~I~iwdl 753 (918)
. . ...|+ .+.+.+..+.+++..+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1 0 11122 24566654444332222 12 6888899
Q ss_pred CCCeeeEEeecC----------c--eEEEEecCCC---EEEEEEcCCeEEEEECCCceEE
Q 002471 754 NNGSCTRVFKGG----------T--AQMRFQPHLG---RYLAAAAENVVSILDAETQACR 798 (918)
Q Consensus 754 ~~~~~~~~~~~~----------~--~~v~~sp~~~---~ll~~~~dg~I~i~D~~t~~~~ 798 (918)
++++.+..|... . .-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988776531 1 1122324554 4556777999999999999886
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.54 E-value=0.015 Score=64.33 Aligned_cols=240 Identities=13% Similarity=0.118 Sum_probs=116.7
Q ss_pred ECCCCceeeEeccCCCCeEEE-----EECCCCCEEEEEeC-CCe--EEEEeCCCCCceeEEeccCC-CCeeEEEEcCCCC
Q 002471 666 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 736 (918)
Q Consensus 666 d~~~~~~~~~l~~h~~~V~~l-----~fspdg~~Lasgs~-Dg~--V~Iwdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 736 (918)
|..+|..+..+..+......+ +|..||+.|+.++. ||. +.+.|+.+ ..+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 556777777776444333322 56778887766655 554 55556665 4455555443 3233567788877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeeEEeec--Cce-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002471 737 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 789 (918)
Q Consensus 737 ~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-p~~~~ll~~~~-----------------------dg~I~i 789 (918)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 766543 456889999999876555432 222 23443 22333344332 235667
Q ss_pred EECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCCC-cceEEEeccCCCceEEEEEeCCCC
Q 002471 790 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 790 ~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d---~--I~iwdl~s~~~-~~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
.|+.+++....+. ....+..+-|+|... +|+-|-++ . -|||-+++... ..+++.-. ....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887655554 457788999999665 55556554 3 37887765322 22222211 122333445899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 863 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 863 ~l~s~s~-----dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
.|+.-+. +..|.-+|..+++...+..-. ....+-.++||+++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 8776443 336777888887655332222 34455667898887654444
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.53 E-value=0.026 Score=62.69 Aligned_cols=211 Identities=12% Similarity=0.145 Sum_probs=123.1
Q ss_pred cEEEEECCCCceeeEecc-CCCCeEEE---EECCC----CCEEEEEeC----------CCeEEEEeCCCC---CceeE--
Q 002471 661 KAVLWHTDTLKSKTNLEE-HSSLITDV---RFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR-- 717 (918)
Q Consensus 661 ~V~iwd~~~~~~~~~l~~-h~~~V~~l---~fspd----g~~Lasgs~----------Dg~V~Iwdl~~~---~~~~~-- 717 (918)
.|+|.|..+.+.+.++.- ....|+++ .|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 588888888777766552 22334443 44432 457777743 289999999873 11222
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eeEE--eecCceEEEEecCCCEEEEEEcCCeEEEE--EC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~sp~~~~ll~~~~dg~I~i~--D~ 792 (918)
.-....++|++|+-. +++++++. .+.|++|++...+ .... +......+.....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223467889999877 34555433 5899999998887 4433 33444556666667899999888877776 44
Q ss_pred CCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeccCCCceEEE---EEeC
Q 002471 793 ETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 859 (918)
Q Consensus 793 ~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-----~---~~~~i~~~~~~~~~i~~i---~~sp 859 (918)
...+....- ......++++.|-.+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 333222221 2245568899998666777777777 8888877531 1 1122233332 4456666 3344
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 002471 860 --TYP------SLLVIGCYQSLELW 876 (918)
Q Consensus 860 --~g~------~l~s~s~dg~I~vw 876 (918)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 122 38888888887733
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.48 E-value=0.011 Score=70.45 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=114.1
Q ss_pred CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 659 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 659 Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|..-.||-...++.......+ ...+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence 55555443222222222223344688999999999887765 2444444433322333222333 237888999
Q ss_pred CCCCeEEEEEe-----------CCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEE---EECCCceEE
Q 002471 733 PNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQACR 798 (918)
Q Consensus 733 p~~~~ll~sgs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i---~D~~t~~~~ 798 (918)
|+|+.+.+... ..+.|.+.+++.++....+.+.+..+.|++++.+++... ++.|++ .....+...
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee
Confidence 99775554322 224455556665554445567789999999999988876 477777 444445411
Q ss_pred E----Eec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002471 799 L----SLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 871 (918)
Q Consensus 799 ~----~l~-~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 871 (918)
. .+. +-...+.++.|..++.+++..... .+...++.... .....-......+..++-.+ ..|++...++
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g 560 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASP--STVYVTDARA 560 (591)
T ss_pred ecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCC--ceEEEEcCCc
Confidence 1 122 233346889999999866443322 34444443221 11101111134455566554 2466666665
Q ss_pred eEEE
Q 002471 872 SLEL 875 (918)
Q Consensus 872 ~I~v 875 (918)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4443
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.45 E-value=0.17 Score=57.57 Aligned_cols=260 Identities=14% Similarity=0.138 Sum_probs=145.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeCCCCC--------
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 713 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l~fsp----dg~~Lasgs~Dg~V~Iwdl~~~~-------- 713 (918)
...|++|+.+|.++||+...... +..-..-..+|..|..-. .....++.-.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 36899999999999999753321 111112456777776532 22233333556778888873211
Q ss_pred ceeEEeccCC--CCeeEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeeEEeec--CceEEEEecCCCEEEEEEcCC
Q 002471 714 YSLRTFMGHS--ASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 785 (918)
Q Consensus 714 ~~~~~~~~h~--~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg 785 (918)
..+.....|. .....+++-|- +..+|+.-+.||.+.+|+-+.....+.+.. -...+.|.+....|++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 1223333333 23334444332 357888999999999999876655555543 235688999999999999998
Q ss_pred eEEEEECCC--------------------ce---EEEEecCCCCCe---EEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 002471 786 VVSILDAET--------------------QA---CRLSLQGHTKPI---DSVCWDPSGELLASVSEDSVRVWTVGSGSEG 839 (918)
Q Consensus 786 ~I~i~D~~t--------------------~~---~~~~l~~h~~~V---~si~~spdg~~Las~s~d~I~iwdl~s~~~~ 839 (918)
.|..|.... ++ .-+++. -...+ ..+.++.....+++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 888885321 00 111111 11222 33333334446666666666666653 2 33
Q ss_pred ceEEEeccCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEE---EEeCCCCEEEEEe
Q 002471 840 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL---AVSTETGYVASAS 909 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp----~g---~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~l---a~spdg~~Lasgs 909 (918)
+..+.+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-... ........+| .|..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~Ws--A~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWS--AQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEe--cCCCCCCEEEEecccCCCCceEEEEc
Confidence 33344432 2222222221 22 24889999999999863332211 1112222233 2333345788888
Q ss_pred cCCcEEE
Q 002471 910 HDKFVKL 916 (918)
Q Consensus 910 ~Dg~I~I 916 (918)
.||.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888865
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0029 Score=70.71 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=91.2
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEecc----C
Q 002471 781 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELSC----N 848 (918)
Q Consensus 781 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~--------~Las~s~d~I~iwdl~s~~~~~~i~~~~~----~ 848 (918)
+.....|+-.|++.|+.+.+..-+.. |.-+.+.|+.+ .|+..+...|.-||.+-.... .+..... .
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYST 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeecccccc
Confidence 33456889999999999999887766 77778888654 344444458999999854331 2221111 2
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
...+.|++...+| +|++|+.+|.|++||-...... .+.+-..+|..|..+.+|++|+..+..
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3456666666555 6999999999999998333222 678889999999999999998776643
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.032 Score=58.24 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=126.3
Q ss_pred EEEEccCC-CEEEEEeCCCc-EEEEECCCCceeeEe--------ccCCCCeEEEEECCCCCEEEEEeC-----CCeEEEE
Q 002471 643 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNL--------EEHSSLITDVRFSPSMPRLATSSF-----DKTVRVW 707 (918)
Q Consensus 643 ~l~fspdg-~~Latgs~Dg~-V~iwd~~~~~~~~~l--------~~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iw 707 (918)
.|+|+|.- .-++.+-.-|+ ..+||........++ .+|. .|++||.+|+..-. -|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 46677743 45555555555 467887766554443 3444 69999999988744 3789999
Q ss_pred eCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeeEEeec------
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG------ 764 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~-----------------Dg~I~iwdl~~~~~~~~~~~------ 764 (918)
|.+..-..+..+..|.-.-..+.|.+||..++++.+. .-.+.+.|..++.++.+..-
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 9997666677888888788889999999877655330 11233344444444433221
Q ss_pred -CceEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC--eEE
Q 002471 765 -GTAQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED--SVR 829 (918)
Q Consensus 765 -~~~~v~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~Las~s~d--~I~ 829 (918)
.+..+...+++..++.+-..| --.+=-...++.+.-+. .....|-+|+.+.+..+++..+-. ...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 233344444443333332221 01111111222222221 112357778888766666655544 889
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002471 830 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 877 (918)
Q Consensus 830 iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd 877 (918)
+||..++. .+.. ..-..++-.-+...-|++.+.+|.|.++.
T Consensus 306 i~da~tG~---vv~~----a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGA---VVSE----AALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCc---EEec----ccccccccceeccCceEEecCCceEEecc
Confidence 99999883 2221 11112222334455578888888888874
No 373
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0081 Score=69.53 Aligned_cols=152 Identities=9% Similarity=0.091 Sum_probs=102.1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 679 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 679 h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
|...|.--++...+++|+.|+.-|.|++|+-..+........+..+.+..++.+++ ++++|+|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 34455555667788999999999999999988644444444444555566666666 66888899999999998876421
Q ss_pred ---------eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002471 759 ---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 759 ---------~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 825 (918)
-...+..+++++|++++..+++|...|.|.+..+.+. .....+......|.-+.+.. +.+|++...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~ 189 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT 189 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh
Confidence 1112446789999999999999999999999887772 11222333456676666652 444444433
Q ss_pred CeEEEEEC
Q 002471 826 DSVRVWTV 833 (918)
Q Consensus 826 d~I~iwdl 833 (918)
. ..++++
T Consensus 190 r-~~Lc~t 196 (726)
T KOG3621|consen 190 R-CILCQT 196 (726)
T ss_pred h-hheeec
Confidence 3 334444
No 374
>PRK10115 protease 2; Provisional
Probab=97.29 E-value=0.17 Score=62.15 Aligned_cols=198 Identities=11% Similarity=-0.009 Sum_probs=103.0
Q ss_pred CCeEEEEECCCCCEEEEEeC-C----CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC-----CcEEE
Q 002471 681 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 750 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~-D----g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D-----g~I~i 750 (918)
-.+..+.|+||+++|+.+.. + -.|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34777899999999887743 2 358888998743222222221 14599999988888776543 36888
Q ss_pred EEcCCC--eeeEEeec--C-ce-EEEEecCCCEEEEEEc---CCeEEEEECC--CceEEEEecCCCCCeEEEEEcCCCCE
Q 002471 751 WSINNG--SCTRVFKG--G-TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 819 (918)
Q Consensus 751 wdl~~~--~~~~~~~~--~-~~-~v~~sp~~~~ll~~~~---dg~I~i~D~~--t~~~~~~l~~h~~~V~si~~spdg~~ 819 (918)
+++.++ +....+.. . .. .+..+.++..++..+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 898887 33334432 1 12 1223336666665444 4578888843 3332222221222222222 333333
Q ss_pred EEEEeCC--e--EEEEECCCCCCcceEEEeccC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEE
Q 002471 820 LASVSED--S--VRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL 886 (918)
Q Consensus 820 Las~s~d--~--I~iwdl~s~~~~~~i~~~~~~--~~~i~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~~ 886 (918)
++....+ . |...++...... ..+..+ ...+..+.+. .+..+++...++ .|++++..+++...+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 3 444444421111 222222 2357777776 233344444455 456667655444443
No 375
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.29 E-value=0.052 Score=55.10 Aligned_cols=205 Identities=10% Similarity=0.082 Sum_probs=109.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc-CCCC-eEEEEEeCCCcEEEEEcC--CCeeeEEee-----
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKD-DLICSCDGDGEIRYWSIN--NGSCTRVFK----- 763 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs-p~~~-~ll~sgs~Dg~I~iwdl~--~~~~~~~~~----- 763 (918)
.++.+--..|.|.-||+.........+.+.. +.++.+- .++. .+.+.|+..-.|.-||.. ..+..+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444566677788886333233333322 2222221 1222 344455555556667733 223333321
Q ss_pred ---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC--------CCeEEEEEcCCCCEEEE-EeCC-eEEE
Q 002471 764 ---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLAS-VSED-SVRV 830 (918)
Q Consensus 764 ---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~--------~~V~si~~spdg~~Las-~s~d-~I~i 830 (918)
.....-..+|++.+ +.+.....-.++....+.....+.+|. .--+.++|+.+.+.+.. -+.+ +|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 12233456787776 444331111122222333333333332 22356889988885554 4555 8877
Q ss_pred EE--CCCCCC--cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 002471 831 WT--VGSGSE--GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 900 (918)
Q Consensus 831 wd--l~s~~~--~~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~sp 900 (918)
|| ..++.. .+.+..++.. .-.--.++...+|..++++-..++|..+|..+|+++ ++.-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555532 2333333321 111223445667887888888889999999999988 6666788999999953
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.24 E-value=0.063 Score=61.44 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=83.7
Q ss_pred cCCCCeEEEEEccC----CCEEEEEeCCCcEEEEECC-----CCceeeEecc-C--CC--CeEEEEECCCCCEEEEEeCC
Q 002471 636 ASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTD-----TLKSKTNLEE-H--SS--LITDVRFSPSMPRLATSSFD 701 (918)
Q Consensus 636 ~H~~~V~~l~fspd----g~~Latgs~Dg~V~iwd~~-----~~~~~~~l~~-h--~~--~V~~l~fspdg~~Lasgs~D 701 (918)
|....|..+.|.|- ...|++.-..+.|.||-+. ..+.+..-.. . .- --..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456899999984 3345555678899999865 2222222111 1 11 12356899999888877766
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
..-.++++......++.-....+.|.|.||..||.+++++.+..=.-++||-...
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6556778776566665555677889999999999999988887778899996543
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.046 Score=59.88 Aligned_cols=185 Identities=16% Similarity=0.056 Sum_probs=115.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-----CCCCeEEEEECCCCCEEEEEeC-----C----Ce
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF-----D----KT 703 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~-----D----g~ 703 (918)
.+.+.++..-.++..|+++. ..+++++.+++..+..+.. -....+++...|+|.+.++... . ..
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 33445555555555666653 4567777766655333321 1245678888999987776544 1 11
Q ss_pred EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC--C----eeeEEe----ecCceEEEEec
Q 002471 704 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRVF----KGGTAQMRFQP 773 (918)
Q Consensus 704 V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~----~~~~~~----~~~~~~v~~sp 773 (918)
-+||-++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +....+ .+..-.++...
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 2455555335666666666666778999999988887777778999998763 1 111111 12334466677
Q ss_pred CCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 002471 774 HLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSE 825 (918)
Q Consensus 774 ~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~ 825 (918)
++...+++...| .|.+|+.. ++.+..+.-....+++++|-- +.+.|++.+.
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 766665554544 99999998 888888887767788888853 4454444433
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.23 E-value=0.14 Score=58.23 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=58.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EECC-CC----ceeeEecc---CC--CCeEEEEECC-----------CCCEEEEE
Q 002471 643 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFSP-----------SMPRLATS 698 (918)
Q Consensus 643 ~l~fspdg~~Latgs~Dg~V~i---wd~~-~~----~~~~~l~~---h~--~~V~~l~fsp-----------dg~~Lasg 698 (918)
+++.+|++++||.+..+..|.+ |+.. .+ .......+ +. ..|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999988877665 6432 11 11222111 11 4677776643 45689999
Q ss_pred eCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 699 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 699 s~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999885 44444444577888877764
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.21 E-value=0.32 Score=58.91 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=152.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeEe--ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCc
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 714 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~--~~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~ 714 (918)
..|.-..|--|..+|.++..||.+.-|-++ ++..-..- .-...++.--.|+..++.-+.++.|.-..+|..+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 456666676778899999999998766544 44332222 22345666667777666555555677677776553 22
Q ss_pred eeEEeccCCCCeeEEE-EcCC-CCeEEEEEeCCCcEEEEEcCCCee--eEEe--ecCceEEEEecCCCEEEEEEc-----
Q 002471 715 SLRTFMGHSASVMSLD-FHPN-KDDLICSCDGDGEIRYWSINNGSC--TRVF--KGGTAQMRFQPHLGRYLAAAA----- 783 (918)
Q Consensus 715 ~~~~~~~h~~~V~sl~-fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~--~~~~--~~~~~~v~~sp~~~~ll~~~~----- 783 (918)
+...+. . ..+..+| |+.+ ....++++. .+.+++.-+..-.. +++. ......+++.+..-.+.+.+.
T Consensus 663 v~spls-~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS-L-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc-h-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 222111 1 1111121 2211 222343443 56677776654322 2222 233445555553333333221
Q ss_pred ------C---CeEEEEECCCceEEEEecCCC----CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 002471 784 ------E---NVVSILDAETQACRLSLQGHT----KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 838 (918)
Q Consensus 784 ------d---g~I~i~D~~t~~~~~~l~~h~----~~V~si~~spd-g~~Las~s~-----------d~I~iwdl~s~~~ 838 (918)
+ ..++++|-.+.+.+...+-.. ..|.++.|..| +.++++|.. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 146777877776655433211 23555568877 557777651 2577787776555
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002471 839 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 839 ~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~I 916 (918)
.+.+.+....+....-+.| +|++++ +-...|++|++.+++.+ .-..|...+..+...-.+..|+.|..=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5566655543333322333 454443 44568999999999666 45578888999999888999998876666544
No 380
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.19 E-value=0.0053 Score=74.27 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=91.6
Q ss_pred CCeEEEEECCCceEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCcceEE-Ee--ccCCCceE
Q 002471 784 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVH-EL--SCNGNKFH 853 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~sp------dg~~Las~s~d~I~iwdl~s~~~~~~i~-~~--~~~~~~i~ 853 (918)
.+.|+-.|++.|+.+..+..+... |..++-.. ....|+..+.+.+..||.|-.. .+++. .. -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999887654 55554321 2234555555599999998653 22221 11 12345677
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
|++.+.+| +||+|+.+|.|++||-...+.. .+.+-..+|.+|+.+.||+||++.|.. .|.|+
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi 644 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLI 644 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEE
Confidence 77777666 6999999999999995433322 566778999999999999998877644 44443
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.12 Score=57.76 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CceeeEecc---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEeCC
Q 002471 649 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 710 (918)
Q Consensus 649 dg~~Latgs-~Dg~V~iwd~~~----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~V~Iwdl~ 710 (918)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|++++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456787777 678999999873 344444442 11 12223334468888888632 2457777777
Q ss_pred CCCceeEEeccC---CCCeeEEEEcCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeeEEeecC--
Q 002471 711 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 765 (918)
Q Consensus 711 ~~~~~~~~~~~h---~~~V~sl~fsp~~~~ll~sgs--------------------~Dg~I~iwdl~~~~~~~~~~~~-- 765 (918)
+ .......... ...-+.+-|.|..+.+| |.. ...++.+||+.+.+.+.++..+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3344444322 23456677888755444 542 2467999999999999988754
Q ss_pred ---ceEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCce----EEEEecCC-----------------CCCeEEEEEcCCC
Q 002471 766 ---TAQMRFQ--PHLGRYLAAAA-ENVVSIL-DAETQA----CRLSLQGH-----------------TKPIDSVCWDPSG 817 (918)
Q Consensus 766 ---~~~v~~s--p~~~~ll~~~~-dg~I~i~-D~~t~~----~~~~l~~h-----------------~~~V~si~~spdg 817 (918)
...++|. |+..+-++++. ...|..| ..+.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2345554 44455444443 5555554 334432 22232211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCcceEEEeccCC----------------CceEEEEEeCCCCEEEEEEc
Q 002471 818 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 818 ~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~----------------~~i~~i~~sp~g~~l~s~s~ 869 (918)
++|...+-. .|+.||+......+.+..+...+ +....+..|-||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 988887765 89999999877766665543221 12356778899999888763
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.16 E-value=0.2 Score=52.94 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCC--eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 681 SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg--~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...-.+.|..++.++-+.+.-| .|+.+|+.++.............--.|+.. ++.++.-.-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3455677867787777777655 799999998433223322233333445555 345666677899999999999988
Q ss_pred eEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC--C---CCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002471 759 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--T---KPIDSVCWDPSGELLASVSED-SVRVWT 832 (918)
Q Consensus 759 ~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h--~---~~V~si~~spdg~~Las~s~d-~I~iwd 832 (918)
+..+.-....--...++..++.+.....|+++|..+.+....+... . ..++-+.|. +|.+.|=.-.. .|...|
T Consensus 123 ~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 8887643333223367788999888999999999988776665432 1 245667776 56665555544 888889
Q ss_pred CCCCCCcceEEEec---------------cCCCceEEEEEeCCCCEEEEEEcC
Q 002471 833 VGSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 870 (918)
Q Consensus 833 l~s~~~~~~i~~~~---------------~~~~~i~~i~~sp~g~~l~s~s~d 870 (918)
..+|. ++..+. ....-.+.|+++|....|++.|..
T Consensus 202 p~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 202 PETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 88873 333221 013457899999988888777753
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.14 E-value=0.23 Score=55.46 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=41.0
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 850 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 850 ~~i~~i~~sp-------~g~~l~s~s~dg~I~vwd~~~~~~~----~~~-~h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
..+..+.|.. .+.+|++.-..+.|...++..+..+ .+. .....+..|++.|||.+.++-+.+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455566653 3344555555568888888755333 222 3445899999999999888888888874
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.13 E-value=0.0011 Score=46.51 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.4
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002471 629 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 666 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd 666 (918)
+....+..|...|.+++|.+++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.13 E-value=0.062 Score=64.29 Aligned_cols=186 Identities=11% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEEe-----CCC--cEEEEEcCCCeeeEEee-cCceEEEEecCCCEEEEEEcC---------
Q 002471 722 HSASVMSLDFHPNKDDLICSCD-----GDG--EIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE--------- 784 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs-----~Dg--~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~d--------- 784 (918)
....+.+.+++|++..++++.. .|. .|.+++.... ...... .....-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3346788999999998877662 233 5555565322 222222 235667899998877766533
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE---EECCCCCCcce--EEEecc-CCCceEEE
Q 002471 785 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGSEGEC--VHELSC-NGNKFHSC 855 (918)
Q Consensus 785 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~i---wdl~s~~~~~~--i~~~~~-~~~~i~~i 855 (918)
+.+.+.+++.++... .....|..+.|+|||..|+....+.|+| -....+. ..+ ...+.. ....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333444333222 2345799999999999888777666666 3333332 111 112222 23335788
Q ss_pred EEeCCCCEEEEEEcCC--eEEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 856 VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 856 ~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~~~~~--h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
.|..++.. +++..++ .|+..++.......+.. ....|.+|+-+++ .|+....+|.+.
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999984 4555544 34444555433222222 2566777777763 455556666443
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.036 Score=66.36 Aligned_cols=216 Identities=8% Similarity=0.040 Sum_probs=107.3
Q ss_pred cEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCCceeEEeccCCCC--eeEEE
Q 002471 661 KAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSAS--VMSLD 730 (918)
Q Consensus 661 ~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~--V~sl~ 730 (918)
.+..||..+.+- +..+...... .+++. -++.++++|+.+ ..|..||..+... ..+..-..+ -.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence 567788765432 2222211111 12222 256677777754 3477888876321 111111111 11222
Q ss_pred EcCCCCeEEEEEeCCC-----cEEEEEcCCCeeeE--EeecCceEE-EEecCCCEEEEEEcC------------------
Q 002471 731 FHPNKDDLICSCDGDG-----EIRYWSINNGSCTR--VFKGGTAQM-RFQPHLGRYLAAAAE------------------ 784 (918)
Q Consensus 731 fsp~~~~ll~sgs~Dg-----~I~iwdl~~~~~~~--~~~~~~~~v-~~sp~~~~ll~~~~d------------------ 784 (918)
.. ++.+.+.|+.++ .|.+||..+.+... .+....... ....++..+++|+.+
T Consensus 349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 22 355767777654 48889988765332 222111111 122344555555543
Q ss_pred -----CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeccCCCce
Q 002471 785 -----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKF 852 (918)
Q Consensus 785 -----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iwdl~s~~~~~~i~~~~~~~~~i 852 (918)
..|..||.++.+-...-.-...........-++++.+.|+.+ .|..||..+......+..+.......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 247788887764332111111111111122346766666532 36788887622344444443322222
Q ss_pred EEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 002471 853 HSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 884 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg--~I~vwd~~~~~~~ 884 (918)
..+++ +++..++||.++ .+..||..+.+..
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 22233 677788888887 7888998888765
No 387
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.05 E-value=0.021 Score=51.80 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=67.6
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 641 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 641 V~~l~fsp---dg-~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
|+++++.. || +.|++|+.|..||||+-+ +.+..+.. .+.|++++-... ..++.+..+|+|-+|+-.. . +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e-e
Confidence 56666654 43 689999999999999844 56666664 445777776655 6799999999999997643 2 2
Q ss_pred EEeccCCCCeeEEEEcC---CCCeEEEEEeCCCcEE
Q 002471 717 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 749 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~ 749 (918)
...+ -...++++.+.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366666543 3444555888788774
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.041 Score=65.74 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=119.3
Q ss_pred cCCCEEEEEeCC------CcEEEEECCCCcee--eEeccCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCC
Q 002471 648 SDGKLLATGGHD------KKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPG 713 (918)
Q Consensus 648 pdg~~Latgs~D------g~V~iwd~~~~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~V~Iwdl~~~~ 713 (918)
..+.+++.||.+ .+|..||..+..-. ..+. ....-.++++. ++.+.++|+.| .++..||.....
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 345567777766 36778887765322 2222 22223344444 45778888888 357788887633
Q ss_pred ceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeeEE--eecCceEEEE-ecCCCEEEEEEcC-
Q 002471 714 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRV--FKGGTAQMRF-QPHLGRYLAAAAE- 784 (918)
Q Consensus 714 ~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~-----I~iwdl~~~~~~~~--~~~~~~~v~~-sp~~~~ll~~~~d- 784 (918)
. ..+..-...-..+....-++.+.+.|+.||. |..||.++.+.... .......... .-++..+++|+.+
T Consensus 361 W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 W--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred e--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 1 1111111111112222224667788888864 77788777653322 2222222333 3344445555543
Q ss_pred -----CeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCc
Q 002471 785 -----NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 785 -----g~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
..|..||..+.+.... +..-..... ++.. ++.+.+.|+.+ +|..||..+.. ...+..+......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCcccccc
Confidence 3678899887754332 221122222 3332 46666666644 47888887642 2222222222222
Q ss_pred eEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 002471 852 FHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 884 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~ 884 (918)
+.. ..-++...++|+.|+ +|..||..+++..
T Consensus 516 ~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 516 VGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ccE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 222 223566677777775 7888888777655
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.02 E-value=0.0018 Score=45.35 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.5
Q ss_pred CceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 002471 670 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 670 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd 708 (918)
++.+..+..|...|.++.|.+++..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.19 Score=53.19 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=119.6
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEecc-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
+.+-+..|.++.|+|+.+.|++......-.||=...|..+.++.- .-..-..|.|..++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566699999999999999988888888887778888888752 1233456778878877777777999999888764
Q ss_pred CceeE---------EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-ee------------EEeecCceEEE
Q 002471 713 GYSLR---------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 770 (918)
Q Consensus 713 ~~~~~---------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 770 (918)
...+. ...........++|.|.+..++ .+-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 33221 1111255677899999988777 45556667777665432 11 11223455677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEE
Q 002471 771 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASV 823 (918)
Q Consensus 771 ~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~ 823 (918)
|.+..+.+++-+. ++.|.-.|.... .+..+.-+. .....|+.+++|.+.+++
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 8777777666655 455555565433 233222111 123467777777644443
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.96 E-value=0.46 Score=50.26 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=116.1
Q ss_pred cceeeeeeecC-CCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCC
Q 002471 627 SFKEANSVRAS-TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 627 s~~~~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg--~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg 702 (918)
+++.+.++... ..-.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. ---..|+.. +++.....=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 34444554422 23345678878888888887766 79999999998776554221 122223333 233333334588
Q ss_pred eEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec--------CceEEEEecC
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPH 774 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~ 774 (918)
...+||.++ -+.+..+. ..+.=+.|+. ++..++ .++....|+++|..+.+..+.+.. ..+.+.|.
T Consensus 111 ~~f~yd~~t-l~~~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 111 TGFVYDPNT-LKKIGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp EEEEEETTT-TEEEEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred eEEEEcccc-ceEEEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 999999987 55666664 3456677874 456666 555577899999988776665532 22334554
Q ss_pred CCEEEEEEc-CCeEEEEECCCceEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002471 775 LGRYLAAAA-ENVVSILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 775 ~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~------------h---~~~V~si~~spdg~~Las~s~d 826 (918)
++.+++-.. ...|...|..+|+++..+.. . ..-.+.|+|+|....|...+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 456666554 67899999999998876521 1 3458899999988766655554
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.049 Score=49.37 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=65.8
Q ss_pred eEEEEEcC---CCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002471 808 IDSVCWDP---SGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 882 (918)
Q Consensus 808 V~si~~sp---dg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~ 882 (918)
|+++++.. ||. .|++|++| .||+|+-. ..+.++.. ...|..++-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee
Confidence 55666544 444 88999999 99999854 45566554 455666665555 569999999999999863332
Q ss_pred EEEEcccCCCeEEEEEeC-CC---CEEEEEecCCcEEE
Q 002471 883 TMTLTAHEGLIAALAVST-ET---GYVASASHDKFVKL 916 (918)
Q Consensus 883 ~~~~~~h~~~V~~la~sp-dg---~~Lasgs~Dg~I~I 916 (918)
..++ ....+.++++.. ++ .-|++|-.+|.|-+
T Consensus 75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2333 233366665543 32 25888888998854
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.021 Score=64.18 Aligned_cols=141 Identities=9% Similarity=0.071 Sum_probs=95.9
Q ss_pred CCCEE-EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCe-------EEEEEeCCCcEEEEEcCCCee--eE
Q 002471 691 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TR 760 (918)
Q Consensus 691 dg~~L-asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~sgs~Dg~I~iwdl~~~~~--~~ 760 (918)
+.++| .++..-..|+-.|++. ++.+..+.-+.. |.-+.+.|+.+. -| .|-.|..|+-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 33443 4445556688888887 778888876666 777777776432 22 466789999999884322 11
Q ss_pred E-----eecCce-EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 761 V-----FKGGTA-QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 761 ~-----~~~~~~-~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
. |..... .+......+++++|+.+|.|++||.-.......+.+...+|..|..+.+|++|++.+...+.+.++.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1 111111 1222334589999999999999998444445556778899999999999999998888866666653
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.81 E-value=0.056 Score=64.61 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=114.5
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCee
Q 002471 691 SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 758 (918)
Q Consensus 691 dg~~Lasgs~D------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~ 758 (918)
.+.+++.|+.+ ..|..||..+.......-........++++.. +.++++|+.| ..+..||.++.+-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 34566667665 35788888764222111111333344555553 4677788888 3577888887764
Q ss_pred eEE--eecCceEEEE-ecCCCEEEEEEcCC-----eEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC--
Q 002471 759 TRV--FKGGTAQMRF-QPHLGRYLAAAAEN-----VVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-- 826 (918)
Q Consensus 759 ~~~--~~~~~~~v~~-sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d-- 826 (918)
... +......+.. .-++..+++|+.|| .|..||.++.+.... +......+-.+. -+|.+.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 332 1222222222 33445566666665 688888887643322 211111122222 247777776633
Q ss_pred -----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEE
Q 002471 827 -----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAAL 896 (918)
Q Consensus 827 -----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~vwd~~~~~~~~~~~h~~~V~~l 896 (918)
+|..||..+.. ...+..+........ +..-++...++||.|+ +|..||..+.+...+..-......+
T Consensus 440 ~~~l~sve~YDP~t~~-W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNT-WTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCc-eeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 47888887652 222222222122222 2223566677777665 5889999988877543322222222
Q ss_pred EE-eCCCCEEEEEecCCc
Q 002471 897 AV-STETGYVASASHDKF 913 (918)
Q Consensus 897 a~-spdg~~Lasgs~Dg~ 913 (918)
.+ .-+++..+.|+.||.
T Consensus 517 g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cEEEECCEEEEEecccCc
Confidence 21 235667777888764
No 395
>PRK13684 Ycf48-like protein; Provisional
Probab=96.79 E-value=1.2 Score=49.82 Aligned_cols=268 Identities=10% Similarity=0.062 Sum_probs=131.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEe----ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 713 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~ 713 (918)
...+++|+|..+..-+|+|. +|.|..= .+.++.-... ......+.+|.|..+ ..+++ +..+. ||..++.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence 55799999986666676664 4543321 1222221111 112334778888643 34444 44453 33334334
Q ss_pred ceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEEEEecCCCEEEEEEcCCe
Q 002471 714 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 714 ~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
.....+. ........+..... ..++ .++..|.|..=+ +.++.-..+ .+....+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 3333221 11111222222222 2233 233344443322 122211111 2334566777764 5556666666
Q ss_pred EEEE-ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEE
Q 002471 787 VSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 787 I~i~-D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~sp~g~~l 864 (918)
+..- |.....-..........++++.+.+++++++++..+.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5543 2221111112223456789999999999887776665433233344332222111 11224577888988776 5
Q ss_pred EEEEcCCeEEEEECCCCcEEEE-c---ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 865 LVIGCYQSLELWNMSENKTMTL-T---AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 865 ~s~s~dg~I~vwd~~~~~~~~~-~---~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
++++.+|.|. .....++.... . .-....+.+.|..+++.++ ++..|.|..|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 5566677655 34455554422 1 2234578888877776655 45678877664
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.76 E-value=0.27 Score=60.56 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeEeccCCCC--------eEEEEECC----------------CCCEEEEEeCCCeEE
Q 002471 650 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 705 (918)
Q Consensus 650 g~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~V~ 705 (918)
+..|++++.++.|+-.|..+++.+-++...... ...+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888888776543211 12233321 345888899999999
Q ss_pred EEeCCCCCceeEEeccCCCCee-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeeE
Q 002471 706 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 760 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~sgs~----------Dg~I~iwdl~~~~~~~ 760 (918)
-.|.++ ++.+..+. ..+.|. .+.-.| .++.+| .++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998 44444332 111110 011111 123344 4432 6889999999999988
Q ss_pred Eeec
Q 002471 761 VFKG 764 (918)
Q Consensus 761 ~~~~ 764 (918)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7753
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.0016 Score=65.85 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=81.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeee-EEe---ecCceE-
Q 002471 694 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVF---KGGTAQ- 768 (918)
Q Consensus 694 ~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~-~~~---~~~~~~- 768 (918)
.|...+.||.|+-++++.-....+...-|..-..-+.+ +. -++.|+.+|.|++|+..-.... ..+ ...+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445668888888876533222322222222111222 23 3457888999999998732111 111 111111
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 836 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-~~V~si~~spdg~~Las~--s~d-~I~iwdl~s~ 836 (918)
+....++...++++.++.|+.|.+.-.+.+-....|. .++........+++|++. +.+ .++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 1222233467778889999999998888777766676 556666666666666666 666 7788887644
No 398
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=1 Score=49.21 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=117.9
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeEec--cC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-~~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
...+.+|.|..+..-+|+|. .+.| +... -++.-.... .. .-...+|.|..+ ..++ ++..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC-
Confidence 44799999996666666654 4543 3332 222211111 11 224667777643 3444 44455 3333333
Q ss_pred CCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE-e---ecCceEEEEecCCCEEEEEEcC
Q 002471 712 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-F---KGGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 712 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~-~---~~~~~~v~~sp~~~~ll~~~~d 784 (918)
++..-..+. .-......|....++ ..+++ +..|.|+.= .+.++.-.. . .+.+..+...+++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333321 122334444444433 33323 334544332 122221111 1 2344555667776655555555
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCCc-ceEEEeccCCCceEEEEEeCCCC
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSEG-ECVHELSCNGNKFHSCVFHPTYP 862 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~-s~~~~-~~i~~~~~~~~~i~~i~~sp~g~ 862 (918)
..+.-||.-...-...-+.....|.++.|.+++.+.+++..+.|++=+.. ..+.. +.+..+......+..++|.+++.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55567776543222222335678999999999887766644477777621 11100 11111222344588999998877
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 863 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 863 ~l~s~s~dg~I~vwd~~~~~~~~~~----~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
..++ +..|.| +.....|+.-... .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus 246 ~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 5554 444533 3455666655322 2345688888876655454 4578887665
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.70 E-value=2.5 Score=51.61 Aligned_cols=240 Identities=13% Similarity=0.020 Sum_probs=124.1
Q ss_pred CCCeEEEEEcc-C---CCEEEEEe---CCCcEEEEECCCC-c--eeeEeccCCCCeEEEE--ECCC-CCEEEEEeCCCeE
Q 002471 638 TSKVICCHFSS-D---GKLLATGG---HDKKAVLWHTDTL-K--SKTNLEEHSSLITDVR--FSPS-MPRLATSSFDKTV 704 (918)
Q Consensus 638 ~~~V~~l~fsp-d---g~~Latgs---~Dg~V~iwd~~~~-~--~~~~l~~h~~~V~~l~--fspd-g~~Lasgs~Dg~V 704 (918)
-++|.+++.-. + ..-|+||+ .||+++|..-.-+ . ....+.+ -..++.++ +.++ ..+|+.+- -+.-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccce
Confidence 45787777654 2 24566554 6899999864321 1 1223334 45677777 4442 22555443 3345
Q ss_pred EEEeCCCCCceeEEeccCCCCeeEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc
Q 002471 705 RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~ 783 (918)
++..+... .......+.......+..+-- ++.++=. ....||+++-..........+..+....+.+...+++++.
T Consensus 431 rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQv--Ts~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQV--TSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccc-eEEeccccccccCceEEEEccCCceEEEE--ecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecC
Confidence 56666542 222222233333333433322 2222211 1345777765422222222344455555555567777777
Q ss_pred CCeEEEEECCCceEEEEe-cCCCCCeEEEEEcCCC------CEEEEEeCC--eEEEEECCCCCCcceEEEecc--CCCce
Q 002471 784 ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG------ELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKF 852 (918)
Q Consensus 784 dg~I~i~D~~t~~~~~~l-~~h~~~V~si~~spdg------~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i 852 (918)
++.+...++......... ...+..|.|+.++|-| ++++.|..+ .+.+.-..+. ...+...+.. -...|
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSI 586 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchhe
Confidence 788877777766522211 2245678999998742 267777766 3333333222 1111111221 12234
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcE
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELW--NMSENKT 883 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~vw--d~~~~~~ 883 (918)
.-..|--|..+|+++..||.+..| |..++..
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 555666678899999999977655 5555543
No 400
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=1.1 Score=47.30 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=137.0
Q ss_pred CCCcccccccCccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeeEeccCCCCeEEEEECCC
Q 002471 615 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPS 691 (918)
Q Consensus 615 ~~~~~~d~~~~~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~fspd 691 (918)
.+.+..|+...-+-.++..+... +--+++.. .|+++.++..|.-+.++|+.+. .....+.........++.+
T Consensus 106 sGL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS-- 180 (370)
T COG5276 106 SGLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS-- 180 (370)
T ss_pred CceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--
Confidence 45566777766555555555432 33444444 4789999887777888888743 3344444455555666665
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCceeEEecc-CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----Cc
Q 002471 692 MPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GT 766 (918)
Q Consensus 692 g~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~ 766 (918)
|++-+.++.|+-+.|-|+.++..++..-.- ....+.++..+++.. ++ ...+--+.+-|..+.+....+.. ..
T Consensus 181 Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~--vvy~egvlivd~s~~ssp~~~gsyet~~p 257 (370)
T COG5276 181 GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL--VVYDEGVLIVDVSGPSSPTVFGSYETSNP 257 (370)
T ss_pred cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE--EEcccceEEEecCCCCCceEeeccccCCc
Confidence 668888888999999999886655433222 233677787776532 33 23355677778777664444321 11
Q ss_pred eEE-EEecCCCEEEEEEcCCeEEEEECCCceEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceE
Q 002471 767 AQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 842 (918)
Q Consensus 767 ~~v-~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~---~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i 842 (918)
.++ .+.-.+++..++..+..+.+.|+.+....+ .+......-..+... +.++.....+...+.|....+. .
T Consensus 258 ~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~---m 332 (370)
T COG5276 258 VSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSM---M 332 (370)
T ss_pred ccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCCceEEEeCCChhh---c
Confidence 111 234445566666666666666665532111 111111111222222 4444444444555555543211 1
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002471 843 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 878 (918)
Q Consensus 843 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~ 878 (918)
....+....+.++..+-+.+.+.....++.+.||+.
T Consensus 333 ~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 333 DKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 111111222344444445557777777888888875
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.48 Score=50.24 Aligned_cols=185 Identities=14% Similarity=0.205 Sum_probs=107.0
Q ss_pred ccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec----CceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002471 720 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 795 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 795 (918)
.+-...|.++.|+|+.+.|+++.. ...-.||=...|..++++.. ....+.+.-.+.+.++--.++.++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566999999999888885554 45555565566888887653 3455777766555555555777877765543
Q ss_pred eEE-------EEec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEE
Q 002471 796 ACR-------LSLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVF 857 (918)
Q Consensus 796 ~~~-------~~l~--~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~ 857 (918)
..+ ..+. .+ ......++|+|....|+.+-+. -+.||.+........++....+ -..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1121 12 5678899999988866666665 4555544432211111111111 123566778
Q ss_pred eCCC-CEEEEEEcCCeEEEEECCCCcEE--EEcccC----C---CeEEEEEeCCCCEE
Q 002471 858 HPTY-PSLLVIGCYQSLELWNMSENKTM--TLTAHE----G---LIAALAVSTETGYV 905 (918)
Q Consensus 858 sp~g-~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~----~---~V~~la~spdg~~L 905 (918)
++.. ..++.+.+++.|.-.|......- .+.+.. . ....|+...+|.+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 7644 45555566677777777665322 222211 1 23467777777543
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.64 E-value=0.51 Score=50.48 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=99.7
Q ss_pred CeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-e-cCceEEEEecCCCEEEEEEcCCeEEEE-ECCCceEE-EE
Q 002471 725 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K-GGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 800 (918)
Q Consensus 725 ~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-~-~~~~~v~~sp~~~~ll~~~~dg~I~i~-D~~t~~~~-~~ 800 (918)
.+.+.++++++..+.+....++.-.+|-...+...... . .......|++++...++...+...+++ +..++... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 68889999999877766633444444433333322222 2 345667799995555555555555555 33333221 11
Q ss_pred ec--CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 801 LQ--GHTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 801 l~--~h~~~V~si~~spdg~~Las~s----~d~I~iwdl~s~~~~------~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
+. .....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 21 1122899999999999777665 336666655432222 11222223356788999999998777766
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002471 869 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 908 (918)
Q Consensus 869 ~dg~-I~v-wd~~~~~~~~~~~h~~~V~~la~spdg~~Lasg 908 (918)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444444333332333333333443333344333
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.56 E-value=0.21 Score=56.72 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=32.8
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC
Q 002471 766 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 807 (918)
Q Consensus 766 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 807 (918)
...+..+|++...+++..-|+|.++|+.++..++.+++..+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 345778899776666666689999999999888888876553
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.55 E-value=0.26 Score=50.20 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEE
Q 002471 680 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 750 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~D---------g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~i 750 (918)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.|+|..+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3456666788999984332222 4455555432 122222222334568899887777778888889988
Q ss_pred EE--cCCCe-----eeEEeec-------CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002471 751 WS--INNGS-----CTRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 815 (918)
Q Consensus 751 wd--l~~~~-----~~~~~~~-------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 815 (918)
|| ..++. .+..++. ....+++..++..++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 44543 2222221 112355566777788888889999999999999999998899999999974
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.52 E-value=1.4 Score=50.03 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=58.9
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEECC--CCc--eeeEeccCCCCeEEEEECCCCCEEEEEeCCC
Q 002471 639 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs-----------~Dg-~V~iwd~~--~~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 702 (918)
.....|+|.++|+++++-. ..+ .|.+++-. +++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 5678899999998877753 223 67777643 233 234444444567889999888 44455554
Q ss_pred eEEEEeCCCCC----c---eeEEecc----CCCCeeEEEEcCCCCeEEEEE
Q 002471 703 TVRVWDADNPG----Y---SLRTFMG----HSASVMSLDFHPNKDDLICSC 742 (918)
Q Consensus 703 ~V~Iwdl~~~~----~---~~~~~~~----h~~~V~sl~fsp~~~~ll~sg 742 (918)
.+++.|.+..+ . .+..+.. +......++|.|+|..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44454654321 1 1112222 134467899999876444333
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.039 Score=66.86 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=72.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCee
Q 002471 649 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 727 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~ 727 (918)
.+..++.|+..|.|-..|+... .....-..-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3457888888888988887642 22222234567899999999999999999999999999997 677777777776666
Q ss_pred EEEE---cCCCCeEEEEEeCCCcEEEEEc
Q 002471 728 SLDF---HPNKDDLICSCDGDGEIRYWSI 753 (918)
Q Consensus 728 sl~f---sp~~~~ll~sgs~Dg~I~iwdl 753 (918)
++-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5544 33333 4557766665 5554
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.2 Score=52.45 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=109.1
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEc-CC-eEEEEECCCceEEEEecCCCC--C
Q 002471 732 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-EN-VVSILDAETQACRLSLQGHTK--P 807 (918)
Q Consensus 732 sp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~-dg-~I~i~D~~t~~~~~~l~~h~~--~ 807 (918)
.+|+.+.+++.+++|.|..- ..+......+.++|....-++... -| ...+||........++...+. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 45566666666666554321 112223344667776655444433 34 467788887765554433222 1
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------C-----
Q 002471 808 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 870 (918)
Q Consensus 808 V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~------d----- 870 (918)
.-.-+|++||.+|+..-.| .|-|||.+. ....+.++..++-..+.+.|.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEeccc--ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999887654 489999983 45677888888888999999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEec
Q 002471 871 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 871 -------g~I~vwd~~~~~~~---~~~--~h~~~V~~la~spdg~~Lasgs~ 910 (918)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.+-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14556666666655 333 35567899999999987776543
No 408
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.19 Score=60.15 Aligned_cols=176 Identities=6% Similarity=0.007 Sum_probs=87.4
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeeEE--eecCc-eEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEE-
Q 002471 735 KDDLICSCDGD------GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 799 (918)
Q Consensus 735 ~~~ll~sgs~D------g~I~iwdl~~~~~~~~--~~~~~-~~v~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~- 799 (918)
++.+++.|+.+ ..+..||..+...... +.... .......++..++.|+.++ .+.+||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 35677777753 3477889887653221 11111 1122333445556666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeccCCCceEE
Q 002471 800 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 854 (918)
Q Consensus 800 -~l~~h~~~V~si~~spdg~~Las~s~d------------------------~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 854 (918)
.+.........+. -+|++.+.|+.+ .|..||..+.. ...+..+... ....
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~--r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTG--TIRP 457 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCcc--cccC
Confidence 1111111122222 257766666542 46677776541 1222222111 1111
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEc---ccCCCeEEEEEeCCCCEEEEEecCC--cEEEe
Q 002471 855 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK--FVKLW 917 (918)
Q Consensus 855 i~~sp~g~~l~s~s~d------g~I~vwd~~~-~~~~~~~---~h~~~V~~la~spdg~~Lasgs~Dg--~I~IW 917 (918)
.+..-++...++||.+ ..|..||..+ .+...+. ........++ -++++.++||.|| .|..|
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 1223355666666654 2478899987 5544222 2222222222 3778888999888 44444
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.19 Score=55.79 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce----eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 002471 637 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 712 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~ 712 (918)
..++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ ..+|..+..| |.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456899999999999999999999999999743222 2223344566999999865 5677666555 888888876
Q ss_pred CceeEEeccCCCCeeEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCe
Q 002471 713 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGS 757 (918)
Q Consensus 713 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs-~Dg~I~iwdl~~~~ 757 (918)
...++..+.|...|.-..|+++..-++.+.+ ..+++.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7778888889999999999998665554444 44555555555544
No 410
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.012 Score=67.34 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCee-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...|+ +++|.|||+ +++.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 3458889999999999999999999999887 455667766777777 999999965 777999999999999999877
Q ss_pred eEE
Q 002471 759 TRV 761 (918)
Q Consensus 759 ~~~ 761 (918)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 665
No 411
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.44 E-value=2.3 Score=48.18 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEeccC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCC-CC
Q 002471 649 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-AS 725 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~-~~ 725 (918)
+| .++++..||.|.-+|.++++.+.....- ...+.+-.+..+|+ |+.++.+|.+..+|.++ +..+..+.... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDAST-GTLVWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCC-CcEEEEEecCCCeE
Confidence 44 4455577888888888888766443322 12233333333564 88888899888888876 55555554443 11
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce-E--EE--EecCCCEEEEEEc--CCeEEEEECCCceEE
Q 002471 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQACR 798 (918)
Q Consensus 726 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~-~--v~--~sp~~~~ll~~~~--dg~I~i~D~~t~~~~ 798 (918)
+..-.+..+ ..++.++.+|.+...|..+++.+..+..... . +. .....+.++.+.. ++.+.-+|.+++..+
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 122222222 2343454789999999998888766543321 1 11 1123355555555 567888888888877
Q ss_pred EEe
Q 002471 799 LSL 801 (918)
Q Consensus 799 ~~l 801 (918)
...
T Consensus 223 w~~ 225 (370)
T COG1520 223 WSQ 225 (370)
T ss_pred eee
Confidence 764
No 412
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.44 E-value=1.4 Score=49.45 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=111.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC----CCCCE--EEEEeC-C---CeEEEEeCCCCCceeE
Q 002471 648 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 717 (918)
Q Consensus 648 pdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~V~Iwdl~~~~~~~~ 717 (918)
|...+|+...+++-+.+||+. ++.+..+.. +.++.|..- -+++. |+.++. + .+|+||.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344577888888999999986 455555542 233333321 13432 445443 2 4699998874333344
Q ss_pred Eecc-------CCCCeeEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeeEEeec--CceEEEEecCCCEE
Q 002471 718 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 778 (918)
Q Consensus 718 ~~~~-------h~~~V~sl~fs--p-~~~~ll~sgs~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~sp~~~~l 778 (918)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3322 12347778874 3 356677788889999888875 22 35666654 45667788888999
Q ss_pred EEEEcCCeEEEEECCC-----ceEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002471 779 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 836 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~s--pdg~-~Las~s~d--~I~iwdl~s~ 836 (918)
+++-.+--|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998762 233333322 34567777774 3454 77777765 8999998754
No 413
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.35 E-value=2.7 Score=47.90 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEecc--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 804 HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~--~i~~~~~--~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
....+..+.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.|.+.. .
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-D 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-C
Confidence 3456889999999998877765543 33333332111 2222222 224588888987766 56666777666553 4
Q ss_pred CCcEEEE----cccCCCeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 880 ENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 880 ~~~~~~~----~~h~~~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.++.... ..-...++.+.|..+++.+++ +.+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 5554422 233457889999877766655 468887665
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.27 E-value=2.8 Score=47.30 Aligned_cols=218 Identities=10% Similarity=0.026 Sum_probs=102.3
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCC---ceeEEecc---CC----CCeeEEEEcCCCCeEEEEE--eC----CCcEEEEEc
Q 002471 691 SMPRLATSS-FDKTVRVWDADNPG---YSLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 753 (918)
Q Consensus 691 dg~~Lasgs-~Dg~V~Iwdl~~~~---~~~~~~~~---h~----~~V~sl~fsp~~~~ll~sg--s~----Dg~I~iwdl 753 (918)
+.++|+..+ ..+.|+|+|+.+.. +..+++.. +. ..-..+...|+|+.+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777777 57889999998532 22333332 11 1222344456665444 43 22 356888888
Q ss_pred CCCeeeEEeecC------ceEEEEecCCCEEEEEEc--------------------CCeEEEEECCCceEEEEecCCCC-
Q 002471 754 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 806 (918)
Q Consensus 754 ~~~~~~~~~~~~------~~~v~~sp~~~~ll~~~~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 806 (918)
++.+.+...+.. ...+-|.|..+.++++.. ..++.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777666542 234667887777777643 34899999999999988864332
Q ss_pred -CeEEEEEcCC--CCEEEEEe-CC-eEEEEECCCCCCcc--eEEEeccC-----------------CCceEEEEEeCCCC
Q 002471 807 -PIDSVCWDPS--GELLASVS-ED-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 862 (918)
Q Consensus 807 -~V~si~~spd--g~~Las~s-~d-~I~iwdl~s~~~~~--~i~~~~~~-----------------~~~i~~i~~sp~g~ 862 (918)
....|.|..+ ..+-++++ -. +|..|--....... .+..+... ..-|+.|..+.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3456676553 44433333 33 55444332222111 11111110 23478999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcEEE-----Ecc---------------cCCCeEEEEEeCCCCEEEEEe
Q 002471 863 SLLVIGC-YQSLELWNMSENKTMT-----LTA---------------HEGLIAALAVSTETGYVASAS 909 (918)
Q Consensus 863 ~l~s~s~-dg~I~vwd~~~~~~~~-----~~~---------------h~~~V~~la~spdg~~Lasgs 909 (918)
+|++++. .|.|+.||+.....-. ..+ -.+...-|..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 6799999998743221 111 112336678888998877654
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.22 E-value=2.5 Score=46.21 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEecc--C---CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
...+.+|.|..+..-+++|. .+. |+...++++.-..... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999995555566654 453 4444444433222211 1 12366777764 3344444 344 3344444
Q ss_pred CCeeeEEe------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002471 755 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 827 (918)
Q Consensus 755 ~~~~~~~~------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~ 827 (918)
.++.-..+ .+....+....+ +..++++..|.|+.-.-.-..-..........+..+..++||++++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44322221 222222333333 234444444444332221112222234455778899999999999999888 6
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCcEEE---Ec--ccCCCeEEEEEeCC
Q 002471 828 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 901 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~-~~~~~~~---~~--~h~~~V~~la~spd 901 (918)
+.-||-... .-...-......|..+.|.+++...+ ....+.|++=+. ...+... .. ...-.+.+++|.++
T Consensus 168 ~~s~~~G~~---~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT---TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S---S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc---cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 667875421 11112222467899999999977555 458888888872 2222221 11 12234889999998
Q ss_pred CCEEEEEecC
Q 002471 902 TGYVASASHD 911 (918)
Q Consensus 902 g~~Lasgs~D 911 (918)
+...|+|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8877766544
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.21 E-value=2 Score=45.09 Aligned_cols=236 Identities=13% Similarity=0.042 Sum_probs=143.8
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEe
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~ 719 (918)
.-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++.. +..|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e--vt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE--VTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc--eEEe
Confidence 45678889999999999888889888988998777766666677788888988877665443 35555554422 2222
Q ss_pred c----cCCCCeeEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCe
Q 002471 720 M----GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 720 ~----~h~~~V~sl~fsp~~~~ll~sgs~---------Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~ 786 (918)
. .-........|.+.|...| ++.. .+.|++|+...+ .....++..|++...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccc
Confidence 2 2334567788888876443 6542 133444443322 24567888999988888888888
Q ss_pred EEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002471 787 VSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 787 I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
|...|..++..... -.......+.+--+|-|+.-++.... .+..||-.... -....+.+....-.++.+...++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcE
Confidence 88888877632111 11112344556666777766664444 67777654321 122333333444445555555554
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcc
Q 002471 864 LLVIGCYQSLELWNMSENKTMTLTA 888 (918)
Q Consensus 864 l~s~s~dg~I~vwd~~~~~~~~~~~ 888 (918)
.++-...+.|.-||-++.....+..
T Consensus 290 W~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred EeeccccCceeecCcccceEEEecC
Confidence 4444445566666666655444443
No 417
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.14 E-value=1.8 Score=54.01 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=102.9
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEeCCCeEEEEeC------CCCC--------ceeEEecc---CCCCeeEEEEcC
Q 002471 678 EHSSLITDVRFS---P----SMPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 733 (918)
Q Consensus 678 ~h~~~V~~l~fs---p----dg~~Lasgs~Dg~V~Iwdl------~~~~--------~~~~~~~~---h~~~V~sl~fsp 733 (918)
....+|..|+|. . ..++|++= ....+.|+.. .... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888888 2 12344443 4555667661 1100 12223321 234677899999
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002471 734 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 813 (918)
Q Consensus 734 ~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 813 (918)
....-||..+..|...|||+......+ .. ...+.....|.| ++|.+. ......|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 877788899999999999992221110 00 011111122333 333321 145668899
Q ss_pred cCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002471 814 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 814 spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
..+...|++++...+.++|+++......+. .......|..+.-++.....+..-....|..+|+..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 998889999998899999998765433222 222356688888777733222222336677777766
No 418
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.14 E-value=3.5 Score=47.13 Aligned_cols=223 Identities=11% Similarity=0.139 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCce---eEEeccCCCCeeEEEEcC---C-CCeEEEEEeCCCcEEEEEcCCCe------
Q 002471 691 SMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHP---N-KDDLICSCDGDGEIRYWSINNGS------ 757 (918)
Q Consensus 691 dg~~Lasgs~Dg~V~Iwdl~~~~~~---~~~~~~h~~~V~sl~fsp---~-~~~ll~sgs~Dg~I~iwdl~~~~------ 757 (918)
+...|++||..|.+|||+....+.. +..-..-..+|..|.+-. . ....| +.=.-..+.||.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccC
Confidence 3458999999999999998653311 222233557787776532 2 22233 33446777788773211
Q ss_pred ------eeEE--eecCceEEEEecCC-----CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002471 758 ------CTRV--FKGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 758 ------~~~~--~~~~~~~v~~sp~~-----~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 824 (918)
.+.. +......+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.+ .---..++|.+.-+.|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 1111 11122233333322 4556667799999999887765555543 11223457778788888888
Q ss_pred CC-eEEEEECCC--------------------CCCcceEEEeccCCCceEEEE---EeCCCCEEEEEEcCCeEEEEECCC
Q 002471 825 ED-SVRVWTVGS--------------------GSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSE 880 (918)
Q Consensus 825 ~d-~I~iwdl~s--------------------~~~~~~i~~~~~~~~~i~~i~---~sp~g~~l~s~s~dg~I~vwd~~~ 880 (918)
.+ .|..|.... ++.......+.. +..+..+. ++.....|++-+ .+.+.+.+..
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~- 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN- 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-
Confidence 87 888886521 111112222222 22333333 333333444444 3556666654
Q ss_pred CcEEEEcccCCCeEEEE-Ee----CCC---CEEEEEecCCcEEEeC
Q 002471 881 NKTMTLTAHEGLIAALA-VS----TET---GYVASASHDKFVKLWK 918 (918)
Q Consensus 881 ~~~~~~~~h~~~V~~la-~s----pdg---~~Lasgs~Dg~I~IWd 918 (918)
|.+...+..+....|++ |. .++ ..++.+++++.+.||+
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 44443333333333332 21 122 2488889999999884
No 419
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.12 E-value=0.0083 Score=42.05 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002471 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (918)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (918)
+..|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999997654
No 420
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.10 E-value=1.1 Score=47.01 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=125.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEE
Q 002471 682 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
.-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+ ....-|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEe
Confidence 345677788998888888888888888887 4444444555556667888898876662 2222666677766554321
Q ss_pred -ee-----cCceEEEEecCCCEEEEEEc---------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002471 762 -FK-----GGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 826 (918)
Q Consensus 762 -~~-----~~~~~v~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 826 (918)
+. .......|.+++...+++.. .+.|++|+.-. ...-..||..|||.+.++.-.+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEeccc
Confidence 11 23456778888877777653 23455555432 2345678999999976665555
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 002471 827 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 903 (918)
Q Consensus 827 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~--~~~~h~~~V~~la~spdg~ 903 (918)
.|...|..++.. +.+..-.........+-.+|-+..-++....+.+..||-...... .+.+....-.++.++..++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 677777665521 222222221333455566677777777666778888776655433 3334333444444444444
Q ss_pred E
Q 002471 904 Y 904 (918)
Q Consensus 904 ~ 904 (918)
.
T Consensus 289 V 289 (353)
T COG4257 289 V 289 (353)
T ss_pred E
Confidence 3
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.014 Score=59.23 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred EEEeCCCcEEEEECCCCceeeE-eccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEc
Q 002471 654 ATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 732 (918)
Q Consensus 654 atgs~Dg~V~iwd~~~~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fs 732 (918)
..-+.||.|+-+++...+.... -..|...- ....-+..|++|+.+|.|.+|...-.+.....+..-...|.++.-.
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 3345677887777654322111 11122221 1122356799999999999998875444443333344445444333
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002471 733 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 794 (918)
Q Consensus 733 p~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 794 (918)
-+...+.++++.||.||.|++.-.+.+.....+.. .++..+++.+.++.|.+|++..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeecccc
Confidence 33344888999999999999988776654432221 2334555555566666665443
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.05 E-value=0.0029 Score=74.47 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=78.8
Q ss_pred eeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECC--CCceeeEe-----ccCCCCeEEEEECC---CCCEEEEEeC
Q 002471 632 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNL-----EEHSSLITDVRFSP---SMPRLATSSF 700 (918)
Q Consensus 632 ~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~V~iwd~~--~~~~~~~l-----~~h~~~V~~l~fsp---dg~~Lasgs~ 700 (918)
..+++-.+.|-.+.|-. +...++ -.-|.+.|||++ .|+....+ ......+.-|.|+| +..++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 44567788888888854 222222 334678999986 44433322 23344556666665 5667777778
Q ss_pred CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 756 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~ 756 (918)
+++|++..+++ .....+.+|...++.++|...|-.+|..-+-||+|..|-+..|
T Consensus 204 ~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 204 GGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 89999888775 2335666799999999888776555656566666666655544
No 423
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.18 Score=50.49 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=63.7
Q ss_pred CCCEEEEEeC--CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceE
Q 002471 691 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 768 (918)
Q Consensus 691 dg~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~ 768 (918)
+|.++.+.+. ...|++||+++ +..+....-....+..=-...-++.+..-.-.||.-.++|.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 45699999997 44443322112222211111224445555667899999999999888777544444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002471 769 MRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 769 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
-....++..++.+....+++.-|.++...
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 44455666677777777777777766543
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.82 E-value=0.49 Score=54.47 Aligned_cols=145 Identities=11% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCCeEEEEECCCCCEE-EEEe--CCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCC----CCeEEEEEeCCCcEEEEE
Q 002471 680 SSLITDVRFSPSMPRL-ATSS--FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 680 ~~~V~~l~fspdg~~L-asgs--~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~sgs~Dg~I~iwd 752 (918)
-.+|..++|. ||+.+ +|.- .+|.+++=|- ..+. .-..|..++|.|- ...++ +.-....|.||-
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----~viG----qFEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----KVIG----QFEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQ 88 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc----cEee----ccceeeeeeecCcccCCCCceE-EEeccceEEEEE
Confidence 3468899998 55544 4432 2444443221 2233 3345888999885 33566 455678999998
Q ss_pred cCC-----CeeeEEeec--------CceEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCC
Q 002471 753 INN-----GSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG 817 (918)
Q Consensus 753 l~~-----~~~~~~~~~--------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg 817 (918)
+.- .+.+..-.. -...+.|+|....+.+-.....-.+++++.. .....+ ...+.|.|.||..||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence 752 222221111 1234679999888777776665566666543 333334 356789999999999
Q ss_pred CEEEEEeCC--eEEEEECCC
Q 002471 818 ELLASVSED--SVRVWTVGS 835 (918)
Q Consensus 818 ~~Las~s~d--~I~iwdl~s 835 (918)
..|+++-.. .-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 976665555 788998643
No 425
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.75 E-value=0.97 Score=55.76 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeEEeecCce---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 002471 738 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 790 (918)
Q Consensus 738 ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~sp--~~~~ll~~~~----------dg~I~i~ 790 (918)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998876642110 001111 2356676643 5789999
Q ss_pred ECCCceEEEEecC
Q 002471 791 DAETQACRLSLQG 803 (918)
Q Consensus 791 D~~t~~~~~~l~~ 803 (918)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988753
No 426
>PHA03098 kelch-like protein; Provisional
Probab=95.74 E-value=0.36 Score=57.75 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=73.8
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--eecCc-eEEEEecCCCEEEEEEcC------CeEEEEECCCceEEEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRV--FKGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLS 800 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~~~~~-~~v~~sp~~~~ll~~~~d------g~I~i~D~~t~~~~~~ 800 (918)
++.+++.|+.+ ..+.+||..+.+.... +.... .......++..++.|+.+ +.+..||..+.+-...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 35566677765 3477888877653321 11111 111222344455555531 4688899887643321
Q ss_pred --ecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc
Q 002471 801 --LQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 869 (918)
Q Consensus 801 --l~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~ 869 (918)
+..... -.+++. .++.+++.|+.+ .+.+||..+.. ...+..+.........+.+ ++..+++||.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 346666666532 37888887642 1222111111111122222 5666666665
Q ss_pred C-----CeEEEEECCCCcEEEEccc
Q 002471 870 Y-----QSLELWNMSENKTMTLTAH 889 (918)
Q Consensus 870 d-----g~I~vwd~~~~~~~~~~~h 889 (918)
+ +.|.+||..+++...+...
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCC
Confidence 4 4788999888876544443
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.72 E-value=0.8 Score=56.00 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVL 664 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~i 664 (918)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346899999999999999987654443
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.70 E-value=1.9 Score=52.79 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
.-.|..|.++++|++|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999998866 5555553
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.64 E-value=0.99 Score=46.08 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeeEeccCCCCeEEEEECCCCCEEEEEeCC---C---eEEEE
Q 002471 651 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW 707 (918)
Q Consensus 651 ~~Latgs~Dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~V~Iw 707 (918)
+.|+.+...++|.+|++. ......+|..- +.|..+.++..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 455554667789999988 44556666644 789999999999999997432 2 56766
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.59 E-value=4.1 Score=43.72 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=112.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEecc-----CCCCeEEEEECCCCC------------EE
Q 002471 640 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 695 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 695 (918)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888788999999986 1123334432 234678888875322 36
Q ss_pred EEEeCCCeEEEEeCCCCCc----eeEEec-cCCCCe-eEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeee--EEeecC
Q 002471 696 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASV-MSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 765 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~----~~~~~~-~h~~~V-~sl~fsp~--~~~ll~sgs~Dg~I~iwdl~~~~~~--~~~~~~ 765 (918)
+.+++||+|.-|.-.-... .+..+. .....| ..+++... +..|.++--..++|.+||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998532111 112222 112333 34555433 4556655556799999986543321 111111
Q ss_pred c-----eEEEEecCCCEE--------------EEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcC------CCC
Q 002471 766 T-----AQMRFQPHLGRY--------------LAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 818 (918)
Q Consensus 766 ~-----~~v~~sp~~~~l--------------l~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~sp------dg~ 818 (918)
. ....+..-++.+ +.+..-|.|.+||..- ..+.++. +.-..-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 001111112222 2333346899998764 4444442 2233445666655 466
Q ss_pred EEEEEeCC-eEEEEECCCCC
Q 002471 819 LLASVSED-SVRVWTVGSGS 837 (918)
Q Consensus 819 ~Las~s~d-~I~iwdl~s~~ 837 (918)
+|+.--.| +|.+||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 77765556 99999998773
No 431
>PLN02153 epithiospecifier protein
Probab=95.56 E-value=1.2 Score=49.75 Aligned_cols=174 Identities=8% Similarity=-0.006 Sum_probs=80.2
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEE--e-----ecCc-eEEEEecCCCEEEEEEcC-----------CeEEEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRV--F-----KGGT-AQMRFQPHLGRYLAAAAE-----------NVVSIL 790 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~--~-----~~~~-~~v~~sp~~~~ll~~~~d-----------g~I~i~ 790 (918)
++.+++.|+.+ ..|.+||+.+.+-... + .... .......++..++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 35566677653 3578899887654322 1 1111 111222334445555542 257788
Q ss_pred ECCCceEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEecc-C-CC
Q 002471 791 DAETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GN 850 (918)
Q Consensus 791 D~~t~~~~~~l~~----h~~~V~si~~spdg~~Las~s~--------------d~I~iwdl~s~~~~~~i~~~~~-~-~~ 850 (918)
|.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ..
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 8887643321100 0111112222 24565554431 257888887642 222211100 0 11
Q ss_pred ceEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEccc------CCC--eEEEEEeCCCCEEEEE
Q 002471 851 KFHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASA 908 (918)
Q Consensus 851 ~i~~i~~sp~g~~l~s~s~d--------------g~I~vwd~~~~~~~~~~~h------~~~--V~~la~spdg~~Lasg 908 (918)
...++ ..-++..++.|+.. +.|+.||..+.+-..+... ... ..++.+.-++++++.|
T Consensus 243 ~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 11222 22346666676641 2678888887765433211 111 1233334445677777
Q ss_pred ecC
Q 002471 909 SHD 911 (918)
Q Consensus 909 s~D 911 (918)
+.+
T Consensus 322 G~~ 324 (341)
T PLN02153 322 GKL 324 (341)
T ss_pred CcC
Confidence 764
No 432
>PHA03098 kelch-like protein; Provisional
Probab=95.33 E-value=0.58 Score=55.99 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=86.9
Q ss_pred cCCCEEEEEeCCC------cEEEEECCCCceee--EeccCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCCc
Q 002471 648 SDGKLLATGGHDK------KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 714 (918)
Q Consensus 648 pdg~~Latgs~Dg------~V~iwd~~~~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~V~Iwdl~~~~~ 714 (918)
.++.+++.||.++ .+..||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556677776542 57778876544322 11111222222222 56777888765 3477888876322
Q ss_pred eeEEecc--CCCCeeEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeeEEee--cCc-eEEEEecCCCEEEEEEc
Q 002471 715 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAA 783 (918)
Q Consensus 715 ~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~D------g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~ll~~~~ 783 (918)
. .... +...-.+++.. ++.+++.|+.+ ..|.+||+.+.+....-. ... .......++..++.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 1 1111 11111122222 34566666632 458889988765433211 111 11122234444555543
Q ss_pred C--------CeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002471 784 E--------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 836 (918)
Q Consensus 784 d--------g~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~ 836 (918)
+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 2388899887654322 1111111112222 56666666643 5777777653
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.46 Score=58.33 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=88.0
Q ss_pred CeEEEEEccCCCEEEEEe--CCCcEEEEECCCCceee-----Eec------cCCCCeEEEEECCCCC-EEEEEeCCCeEE
Q 002471 640 KVICCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKT-----NLE------EHSSLITDVRFSPSMP-RLATSSFDKTVR 705 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs--~Dg~V~iwd~~~~~~~~-----~l~------~h~~~V~~l~fspdg~-~Lasgs~Dg~V~ 705 (918)
.|..+.+.+|++..++.. .+-.|++||+++..... -|. ....-+.|+.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455566667776655543 33478889987532211 122 2234567888998533 456677799999
Q ss_pred EEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe-------ecCceEEEEecCCCEE
Q 002471 706 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRY 778 (918)
Q Consensus 706 Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~sp~~~~l 778 (918)
|..+.-....+..+ .....++|++|+|.|..++ .|...|++.-|...-. ..+.+ ...+.+++|.....++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceee-EecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 99876433333332 3556789999999988776 8888999998876533 22222 1356778887766555
Q ss_pred EEE
Q 002471 779 LAA 781 (918)
Q Consensus 779 l~~ 781 (918)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 434
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.11 Score=63.13 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=56.9
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE---ECCCCCEEEEEeCCCeEEEEeC
Q 002471 636 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 636 ~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~---fspdg~~Lasgs~Dg~V~Iwdl 709 (918)
.-.++|+|++|+.||++++.|-.+|.|.+||+..++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4568999999999999999999999999999999999998887766655544 4445556777766665 5544
No 435
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.28 E-value=6.9 Score=44.34 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=97.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCCceeEEeccC--CCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCce---
Q 002471 693 PRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--- 767 (918)
Q Consensus 693 ~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~--- 767 (918)
..++++..||.|.-.|.++. ..+.....- ...+.+-.+..+|. |+.++.+|.++.+|.++++.+..+.....
T Consensus 69 g~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 35555677888888888773 322211111 12222222333544 44788899999999999988887776551
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCC---CeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcce
Q 002471 768 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGEC 841 (918)
Q Consensus 768 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~---~V~si~~spdg~~Las~s~--d-~I~iwdl~s~~~~~~ 841 (918)
.-........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|.+++...-.
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 111122234455555789999999999988777543221 11111111222 3333433 3 566666655532111
Q ss_pred EEE-eccCCCce------EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 842 VHE-LSCNGNKF------HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 842 i~~-~~~~~~~i------~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
.+. .......+ ..-...-+ ..++.++.++.+..+|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 100 00000000 00001111 22466677778888898888877
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.18 E-value=0.0054 Score=68.11 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=102.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 760 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~ 760 (918)
..-....|-+++..++.++.+-.|..||-.. ..+.. ...++....++|..+++.+++.+-..+.+.+||+.+...-.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhc--ceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3344567788887899999999999998763 22222 23456677799999888888888889999999998653221
Q ss_pred EeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002471 761 VFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 761 ~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~ 823 (918)
.-.++ ..-+.|++....++.+...+.+.|+...+.+.+.....|...+++++|.+.+..+...
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 11111 1225688888888888889999999998887776666689999999999876544433
No 437
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.11 E-value=3.2 Score=44.32 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=86.7
Q ss_pred CeEEEEEccCCCEEEEEe-CC--CcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEe-CCCCCce
Q 002471 640 KVICCHFSSDGKLLATGG-HD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 715 (918)
Q Consensus 640 ~V~~l~fspdg~~Latgs-~D--g~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwd-l~~~~~~ 715 (918)
.+.+.++++||..+|... .+ ..|+++... .....+. ....++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999877665 23 345555433 3222221 223788889999987777766677677774 2222222
Q ss_pred eEEeccC--CCCeeEEEEcCCCCeEEEEE--eCCCcEEEEEcCC---C--e----eeEEe---ecCceEEEEecCCCEEE
Q 002471 716 LRTFMGH--SASVMSLDFHPNKDDLICSC--DGDGEIRYWSINN---G--S----CTRVF---KGGTAQMRFQPHLGRYL 779 (918)
Q Consensus 716 ~~~~~~h--~~~V~sl~fsp~~~~ll~sg--s~Dg~I~iwdl~~---~--~----~~~~~---~~~~~~v~~sp~~~~ll 779 (918)
...+... ...|.++.++|||.++++.. ..++.|.+--+.. + . .+... ...+..+.|..+...++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222211 12899999999999987665 3356777665532 2 0 11111 13456788999887666
Q ss_pred EEEcCC
Q 002471 780 AAAAEN 785 (918)
Q Consensus 780 ~~~~dg 785 (918)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665533
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=95.11 E-value=5.3 Score=44.57 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=82.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 758 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~ 758 (918)
...+.++.+.+++.+++++. .|.+.. ..+..+.... ....-...++++.+.+++. ++++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45789999999887666554 454432 2222222222 2233456789999999865 4434 4467665433444432
Q ss_pred eEEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002471 759 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 828 (918)
Q Consensus 759 ~~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~~spdg~~Las~s~d~I 828 (918)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-...+..+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 123456677754 4666667776553 23333322222 222345788888888888888888877
Q ss_pred EEEE
Q 002471 829 RVWT 832 (918)
Q Consensus 829 ~iwd 832 (918)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
No 439
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.05 E-value=6.8 Score=43.05 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=108.8
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CceeeEeccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCCc-----------
Q 002471 649 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 714 (918)
Q Consensus 649 dg~~Latgs~Dg~V~iwd~~~--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~V~Iwdl~~~~~----------- 714 (918)
++++|+.|+++|...+. +.. .+..+.+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999988855544 553 2333333 466899999998777766655 344599999842110
Q ss_pred ---eeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeeEEe---e---cCceEEEE-ecC--CCEE
Q 002471 715 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---GGTAQMRF-QPH--LGRY 778 (918)
Q Consensus 715 ---~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~----~~~~~~---~---~~~~~v~~-sp~--~~~l 778 (918)
......++...+.-++.......+++++.....|.++.+... ...+.+ . .......+ +.. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344434334443222223334444566666544322 112211 0 11111222 222 3456
Q ss_pred EEEEcCCeEEEEECCC--ce-----EEEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCC-CCCcceEEEeccCC
Q 002471 779 LAAAAENVVSILDAET--QA-----CRLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGS-GSEGECVHELSCNG 849 (918)
Q Consensus 779 l~~~~dg~I~i~D~~t--~~-----~~~~l~~h~-~~V~si~~spdg~~Las~s~d~I~iwdl~s-~~~~~~i~~~~~~~ 849 (918)
++|+..+...++++.. .. .-....... .++ ++...+++.+|+ +-++...+.|... .......-.+ .
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w---~ 243 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW---E 243 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCCccccceEEEc---C
Confidence 6666543344444422 10 000011111 333 333334454544 4444444555542 1111111112 3
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc
Q 002471 850 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 887 (918)
Q Consensus 850 ~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~ 887 (918)
....++++. ..+|++-+ ++.|.|+++.+++.+...
T Consensus 244 ~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 244 FMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred CcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 345566666 35666665 556999999999877433
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.96 E-value=0.89 Score=51.54 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=61.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Cc-ceEEEeccC----CCceEEEEEeCCCCEEEEEEcC----
Q 002471 805 TKPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EG-ECVHELSCN----GNKFHSCVFHPTYPSLLVIGCY---- 870 (918)
Q Consensus 805 ~~~V~si~~spdg~~Las~s~d~I~iw-dl~s~~----~~-~~i~~~~~~----~~~i~~i~~sp~g~~l~s~s~d---- 870 (918)
....+.++|.++| +++ ++...|..| |..... .. ..+..+... ......++|.|||.+.++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456788998888 444 444555544 443211 11 222333322 3446788999999866655521
Q ss_pred ---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002471 871 ---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 871 ---------------g~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~D 911 (918)
+.|.-+|..+++...+.........++|+++|.++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34666666665544443334456789999999887764433
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=2.4 Score=50.36 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=92.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.+.+.+|..+|....=+. +.--.|+||++ +|..+.++.-....+..+.|+.+. .|++...||+|+||++.. ..+.
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g--e~ie 117 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG--EFIE 117 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch--hhhc
Confidence 444555555553211111 33346888876 455555554444478899999654 677778899999999974 2222
Q ss_pred E----eccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeec------CceEEEEecCC-C-EEEEEEc-C
Q 002471 718 T----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQMRFQPHL-G-RYLAAAA-E 784 (918)
Q Consensus 718 ~----~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~------~~~~v~~sp~~-~-~ll~~~~-d 784 (918)
. +......|..+.|..+| ++ .-..+|.|.+.+-......+.++. ...+-...+.+ . .++..-. .
T Consensus 118 ~~svg~e~~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred ccccccccccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechh
Confidence 2 12223345555555443 22 233355555544332222333322 11111111111 1 1111100 0
Q ss_pred CeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 785 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 785 g~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
-...++-.++. .....+......+..+..+|++++|+-..+. .|.+-++...
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 00011111111 1111122223567788899999988887776 7777766543
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.91 E-value=0.63 Score=52.43 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=109.8
Q ss_pred cEEEEcCCCeeeccCCCeeEeCC---CcchhhhcccccccCCCcCceeeeeccCCC-------CCCCCCCcccccccCcc
Q 002471 558 LMMFGTDGAGTLTSPSNQLWDDK---DLELRADMDRLVEDGSLDDNVESFLSHDDT-------DPRDAGGRGMDVSQGFS 627 (918)
Q Consensus 558 ~~~fs~dg~~~~~~~~~~lwd~~---~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~-------~~~~~~~~~~d~~~~~s 627 (918)
.+-|-.+..|+.-++.+.++-.. ..++.+.+..+..+|+..-......-++.. +........+|+..+
T Consensus 423 ~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG-- 500 (776)
T COG5167 423 VVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG-- 500 (776)
T ss_pred EEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc--
Confidence 34444666677777777775432 356666776666665443333222222221 111122234555544
Q ss_pred ceeeeeeecCCCCeEEEEEccCCC-------EEEEEeCCCcEEEEECC-CCceeeEeccCCCCeEEEEECC----CCCEE
Q 002471 628 FKEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP----SMPRL 695 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fspdg~-------~Latgs~Dg~V~iwd~~-~~~~~~~l~~h~~~V~~l~fsp----dg~~L 695 (918)
+.+..+..|.+. -|.|.|+.+ --++|-.+..|.-.|.. .+..+.. ......++.-.|+. ...+|
T Consensus 501 -kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fss~~tTesGyI 576 (776)
T COG5167 501 -KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFSSGMTTESGYI 576 (776)
T ss_pred -eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhccccccccccccccCceE
Confidence 455556666654 567777543 12344456566555644 3322222 12233334344443 34599
Q ss_pred EEEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002471 696 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 755 (918)
Q Consensus 696 asgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~ 755 (918)
|+||..|.||+||.-. ......+.+....|..|....+|+++||+| ...|.+.|++-
T Consensus 577 a~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 577 AAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred EEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 9999999999999764 333445667778899999999999999888 57788888753
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.21 Score=61.14 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=92.6
Q ss_pred CeEEEEECCCCCEEEEE--eCCCeEEEEeCCCCCce----eE------EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEE
Q 002471 682 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 749 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasg--s~Dg~V~Iwdl~~~~~~----~~------~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~ 749 (918)
.|..+...+|+...++. +.+-.|.+||+++-... .+ +.......+.++.|.|.=...++.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676655444 34557899999752111 11 11122345667889887555566788899999
Q ss_pred EEEcCCCee-eE--EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC---C-CCCeEEEEEcCCCCEEEE
Q 002471 750 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---H-TKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 750 iwdl~~~~~-~~--~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h-~~~V~si~~spdg~~Las 822 (918)
+..+..... +. .+....++++|+|.|..++++-..|++.-|...-. .+..+.+ . ...|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764322 12 23346789999999999999999999988865432 2222221 1 367999999988887776
Q ss_pred Ee
Q 002471 823 VS 824 (918)
Q Consensus 823 ~s 824 (918)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 444
>PLN02193 nitrile-specifier protein
Probab=94.82 E-value=11 Score=44.28 Aligned_cols=172 Identities=8% Similarity=-0.007 Sum_probs=81.3
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeeEEee-c--C---ceEE-EEecCCCEEEEEEcC-----CeEEEEECCCce
Q 002471 736 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--G---TAQM-RFQPHLGRYLAAAAE-----NVVSILDAETQA 796 (918)
Q Consensus 736 ~~ll~sgs~D-------g~I~iwdl~~~~~~~~~~-~--~---~~~v-~~sp~~~~ll~~~~d-----g~I~i~D~~t~~ 796 (918)
+.+++.|+.+ ..+.+||+++.+-...-. + . .... .....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347788887765432110 0 0 0111 122233444555543 468889988765
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEE
Q 002471 797 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSL 864 (918)
Q Consensus 797 ~~~~l~~----h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~l 864 (918)
-...-.. ....-.+++. -++++++.|+.+ .+.+||+.+.. ...+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 4332111 1111122222 245666666542 46778876541 11111000 00011112222 256667
Q ss_pred EEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEecC
Q 002471 865 LVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 865 ~s~s~d----g~I~vwd~~~~~~~~~~~h-----~~~V~~la~spdg~~Lasgs~D 911 (918)
++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 777655 4689999998876644322 1112222 23356677777753
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.80 E-value=3 Score=46.53 Aligned_cols=76 Identities=9% Similarity=0.051 Sum_probs=42.9
Q ss_pred EEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEE-eccCCCceEEEEEeCCCCEEEEEE
Q 002471 798 RLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 798 ~~~l~~h~~~V~si~~sp-------dg~~Las~s~d-~I~iwdl~s~~~~~~i~~-~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
+..+..| ..+..+.|-. .|.+|++.-.. .|...++........... +......+..+++.|||.++++..
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3344433 4566666653 34466655555 777777754422222222 233444789999999998777777
Q ss_pred cCCeEE
Q 002471 869 CYQSLE 874 (918)
Q Consensus 869 ~dg~I~ 874 (918)
.+|.|+
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 777764
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.74 E-value=0.017 Score=68.41 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=77.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~V~Iw 707 (918)
..|..|-|-++.-++..+-.+++|++..+++... ..|++|...+++++ .+|||+.|++++.||.|+.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 3445555555667888888899999887765432 55666877777665 58899999999999999998
Q ss_pred eCCCCC----ceeEEeccCC-CCeeEEEEcCC-------C--CeEEEEEeCCCcEEEEEcCCCeee
Q 002471 708 DADNPG----YSLRTFMGHS-ASVMSLDFHPN-------K--DDLICSCDGDGEIRYWSINNGSCT 759 (918)
Q Consensus 708 dl~~~~----~~~~~~~~h~-~~V~sl~fsp~-------~--~~ll~sgs~Dg~I~iwdl~~~~~~ 759 (918)
-+.-.+ .|+..++.|+ .+-.|.-|+.. + ..+|-+...+..+++|.....+|.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 765322 3344555565 23222223321 1 123333444677999988877776
No 447
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.72 E-value=12 Score=44.33 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=118.9
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCc---eeeEeccC-CCCeEEEEECCCC-CEEEEEeC--CCeEEEEeCCCCCceeEEe
Q 002471 647 SSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEH-SSLITDVRFSPSM-PRLATSSF--DKTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 647 spdg~~Latgs~Dg~V~iwd~~~~~---~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~--Dg~V~Iwdl~~~~~~~~~~ 719 (918)
..++..++.+..+|.++...+.... .+..+ +. ....+++.+..++ .+|+.||. |+.+.-|.... -..+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEec
Confidence 4567789999999999988776433 12222 22 4556677776554 47777877 44444454322 2223333
Q ss_pred ccCCCCeeEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCe---eeEEeec-CceEEEEecCC---CEEEE
Q 002471 720 MGHSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGS---CTRVFKG-GTAQMRFQPHL---GRYLA 780 (918)
Q Consensus 720 ~~h~~~V~sl~fsp~---~~-------~ll~sgs--~Dg~I~iwdl~~~~---~~~~~~~-~~~~v~~sp~~---~~ll~ 780 (918)
. .-++|.++++... +. .++++++ .+|.++++.-.-+- ....... ++..+-..+.. ..+++
T Consensus 297 ~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 297 P-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred c-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3 4578888888532 12 4554443 46788887432111 1111111 12222222221 33444
Q ss_pred EEcCCeEEEEECC---CceEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc-CCCc
Q 002471 781 AAAENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNK 851 (918)
Q Consensus 781 ~~~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~-~~~~ 851 (918)
.+....-+++.+. ..+.+..+. +. ...+.+..+. +..++=.....|++.+.... .....+.. ....
T Consensus 376 ~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 376 LSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 4444444444442 333332221 11 2223333333 56777777778899987654 33333322 2334
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 900 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~-~~~-----~h~~~V~~la~sp 900 (918)
|.++++ ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444444 3467888888899999988877765 211 2567888888766
No 448
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.67 E-value=6.4 Score=40.90 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=104.8
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC--CCCC--EEEEEeC--CCeEEEEeCCCCCc
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS--PSMP--RLATSSF--DKTVRVWDADNPGY 714 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs--pdg~--~Lasgs~--Dg~V~Iwdl~~~~~ 714 (918)
|+--.-+|+...+++....+-++|||+. ++.+..+....-.-.++.+- -.|. .|+.+|. ...|.+|.++....
T Consensus 58 IwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~ 136 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQ 136 (364)
T ss_pred eEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCcc
Confidence 4444456777888888889999999986 44455544322222222221 1333 2455543 45788898876444
Q ss_pred eeEEeccC-------CCCeeEEEEc--CC-CCeEEEEEeCCCcEEEEEcCC-------CeeeEEeecCc--eEEEEecCC
Q 002471 715 SLRTFMGH-------SASVMSLDFH--PN-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKGGT--AQMRFQPHL 775 (918)
Q Consensus 715 ~~~~~~~h-------~~~V~sl~fs--p~-~~~ll~sgs~Dg~I~iwdl~~-------~~~~~~~~~~~--~~v~~sp~~ 775 (918)
.+..+... ...++.++.. +. +..+++....+|.|+-|.+.. .+.++.|+... ..+......
T Consensus 137 ~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEt 216 (364)
T COG4247 137 YLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDET 216 (364)
T ss_pred ceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeecccc
Confidence 44444432 2345566664 33 566777788899998887653 24555555432 223333334
Q ss_pred CEEEEEEcCCeEEEEECC-------CceEEEEecCC---CCCe--EEEEEcCCCC-EEEEEeCC--eEEEEECC
Q 002471 776 GRYLAAAAENVVSILDAE-------TQACRLSLQGH---TKPI--DSVCWDPSGE-LLASVSED--SVRVWTVG 834 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~-------t~~~~~~l~~h---~~~V--~si~~spdg~-~Las~s~d--~I~iwdl~ 834 (918)
+.++.+-.| +.||..+ +++.+.++.+. ...| ..|-+-|+|+ ||+..+.+ +..+|..+
T Consensus 217 G~LYIaeEd--vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~Re 288 (364)
T COG4247 217 GFLYIAEED--VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTRE 288 (364)
T ss_pred ceEEEeecc--ceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEee
Confidence 555555444 4455432 23344333321 1222 2456778887 66666655 55566543
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.58 E-value=2.9 Score=46.42 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=49.2
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeee---EEe---ecCce-EEEEecCCCEEEEEEc-----CCeEEEEECCCceEE
Q 002471 736 DDLICSCDGD-----GEIRYWSINNGSCT---RVF---KGGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 798 (918)
Q Consensus 736 ~~ll~sgs~D-----g~I~iwdl~~~~~~---~~~---~~~~~-~v~~sp~~~~ll~~~~-----dg~I~i~D~~t~~~~ 798 (918)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ......++..++.++. ...+.+||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566667654 35677777765531 111 11111 1122233445555553 246888998876433
Q ss_pred E--EecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002471 799 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 836 (918)
Q Consensus 799 ~--~l~~h~~~V~si~~spdg~~Las~s~d-----~I~iwdl~s~ 836 (918)
. .+... ......+..-++++++.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 12111 112222223356777777654 3567888764
No 450
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.53 E-value=0.11 Score=39.71 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 671 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~ 671 (918)
...|.+++|+|...+||.|..||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.47 E-value=6.9 Score=42.64 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=100.6
Q ss_pred eEEEEeCCCCCceeEEecc------CCCCeeEEEEcCCC-----CeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEE
Q 002471 703 TVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 771 (918)
Q Consensus 703 ~V~Iwdl~~~~~~~~~~~~------h~~~V~sl~fsp~~-----~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 771 (918)
.|.+||+.+ ...++.+.- ....+..+.+.... ....++=...+.|.|+|+.+++..+...... ..
T Consensus 35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~---~~ 110 (287)
T PF03022_consen 35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF---SP 110 (287)
T ss_dssp EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC---TT
T ss_pred EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc---ce
Confidence 577778877 445554432 24557777776532 2334454555789999999998877765411 11
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC-----
Q 002471 772 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE----- 838 (918)
Q Consensus 772 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp---dg~~Las~s~d~I~iwdl~s~-----~~----- 838 (918)
.|+...+.. +|... ... ..+..++.+| ++++|+-......++|.+.+. ..
T Consensus 111 ~p~~~~~~i---~g~~~-----------~~~---dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~ 173 (287)
T PF03022_consen 111 DPDAGPFTI---GGESF-----------QWP---DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA 173 (287)
T ss_dssp S-SSEEEEE---TTEEE-----------EET---TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-
T ss_pred eccccceec---cCceE-----------ecC---CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc
Confidence 111111111 11111 111 2277778766 777887776654455554321 11
Q ss_pred -cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----cE-EEEc-cc-CCCeEEEEEeC--CCCEEEEE
Q 002471 839 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN----KT-MTLT-AH-EGLIAALAVST--ETGYVASA 908 (918)
Q Consensus 839 -~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~----~~-~~~~-~h-~~~V~~la~sp--dg~~Lasg 908 (918)
...+..+-........++++++|..+++--..+.|..|+..+. .. +... .. -..+..+.+.+ +|.+.+.+
T Consensus 174 ~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 174 LASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1122232222345667889999988888888899999999872 22 2222 22 35778899988 77665554
No 452
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.15 E-value=0.91 Score=54.09 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=84.9
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEec-cCCCCeEEEEECC--CCCEEEEEeCCCe
Q 002471 627 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 703 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~ 703 (918)
.|....+++.....+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.. ++..+++.|....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 556667777777777777777766665565556689999998776444333 4578899999964 8889999999999
Q ss_pred EEEEeCC-----CCC---ceeEE--eccCC-CCeeEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002471 704 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 754 (918)
Q Consensus 704 V~Iwdl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~ 754 (918)
|.+|.-. +.+ ..++. +..|+ .+|.+.+|.++|. +++++ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 9998542 111 12222 22333 6799999999875 33233 4678888743
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=4.5 Score=48.18 Aligned_cols=175 Identities=12% Similarity=0.220 Sum_probs=88.6
Q ss_pred CeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeE------EeecCceEEEEecCC
Q 002471 702 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------VFKGGTAQMRFQPHL 775 (918)
Q Consensus 702 g~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~------~~~~~~~~v~~sp~~ 775 (918)
-.|+||++. +..+..+.-....+..+.|+.+. .|| +...||++++|++-...... .....+..+.+.. +
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 458888876 45554444444478889999774 455 67789999999986432221 1111222333333 2
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecC-CCCCeEEEEEc--CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeccC
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~~V~si~~s--pdg~---~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
+ +++-..+|.|.+..-.....++++.. ......+.||. +++. .++-...- ...++-..... .....+...
T Consensus 139 G-Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~ 215 (829)
T KOG2280|consen 139 G-VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP 215 (829)
T ss_pred c-eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence 3 34444445544443322222222222 11111112222 2211 11111100 11122221111 112222222
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002471 849 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 884 (918)
Q Consensus 849 ~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~ 884 (918)
...+..|..+|+.++|+.-..+|.|.+-+++..+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888999999999999999999999888766554
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.82 E-value=11 Score=41.98 Aligned_cols=141 Identities=12% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCeeEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeeE-----Eee-----------cCceEEEEecCCCE
Q 002471 724 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTR-----VFK-----------GGTAQMRFQPHLGR 777 (918)
Q Consensus 724 ~~V~sl~fsp~~~~ll~sgs~Dg~------I~iwdl~~~----~~~~-----~~~-----------~~~~~v~~sp~~~~ 777 (918)
+.+..|.+.+++..++ +.+++|. ++.+++... ..+. .+. .....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4466777776555544 4555666 555555431 0000 010 13345777555555
Q ss_pred EEEEEcC------CeEEEEECCCceEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002471 778 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 827 (918)
Q Consensus 778 ll~~~~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~si~~spdg~~Las~s~d--------~- 827 (918)
+++.-.+ ..|+.++.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5554456 688888876 54443331 133468899999999966555322 1
Q ss_pred ------EEEEECCCCC----CcceEEEecc-----CCCceEEEEEeCCCCEEEE
Q 002471 828 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 828 ------I~iwdl~s~~----~~~~i~~~~~-----~~~~i~~i~~sp~g~~l~s 866 (918)
++|+.+.... .....+.+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5555554322 1222333332 4677899999999986654
No 455
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.80 E-value=1.4 Score=52.64 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECC---
Q 002471 806 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS--- 879 (918)
Q Consensus 806 ~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~--sp~g~~l~s~s~dg~I~vwd~~--- 879 (918)
....-+.-+.-++..++-+.. .+.|||.+.+. .+....+ .....|.++.| .|++..+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344455555555555554444 99999998763 2222222 34677888887 5689999999999999998531
Q ss_pred --CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 880 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 880 --~~-------~~~~~~~h~-~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.. +.+.+..|+ .+|.+.+|.++|.+++.++ +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997665543 3466654
No 456
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.75 E-value=3 Score=48.08 Aligned_cols=267 Identities=15% Similarity=0.056 Sum_probs=124.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCcee
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 716 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~ 716 (918)
..+|.++.|.-.| .|.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+++| |.+.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4568888888887 556666665 5667777777665544433 556666555444 577777777 7777766411111
Q ss_pred EEeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee--cCceE-EE-EecCCCEEEEEEcCCeEEEEEC
Q 002471 717 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQ-MR-FQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 717 ~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~--~~~~~-v~-~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
.-..-....|..+.-...|... .|+..|..+.---+.+-.....+ ..... .. +....+.+.++..++.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lW--iGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELW--IGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCCCEE--EeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 1111123344444444444322 45555544332222221111111 11111 11 2223456666776666666543
Q ss_pred CCceEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002471 793 ETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 868 (918)
Q Consensus 793 ~t~~~~~~l~~h~~-~V~si~~sp---dg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s 868 (918)
. ......+...++ .+-.++..| +.......+.+.+.+-+-.++.....++.+. ...|+.+++..++ .+..++
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEEe
Confidence 2 111111111111 011111111 0000000011111122222222112222222 3445666666644 467777
Q ss_pred cCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 869 CYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 869 ~dg~I~vwd~~~-~~~~~~~--~h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
..+-+..|+..+ +...... -..+.|..|.=.|+++ |..|+.+|.++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 776677777766 3333221 2356788888888888 66777788765
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.75 E-value=1.5 Score=49.66 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=93.4
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-ee--
Q 002471 691 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CT-- 759 (918)
Q Consensus 691 dg~~La-sgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~sgs~Dg~I~iwdl~~~~-~~-- 759 (918)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|..+ .-| .|-.+..|.-.|.+-.. .+
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455677778876 7777777777665 366666522 123 45557777777766432 12
Q ss_pred EEeecCceEEEEe----cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002471 760 RVFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 834 (918)
Q Consensus 760 ~~~~~~~~~v~~s----p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 834 (918)
..++.-.+.-.|+ ...+++++++..|.|++||.-.......+.+....|..|..+.+|++|++.|...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2222222222232 34589999999999999997666555566777788999999999999999998888888875
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=4.8 Score=45.15 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=87.3
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCC--CceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC---ceeE
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLR 717 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~---~~~~ 717 (918)
+-|. |.+.++.+...|.+.=|-+.. ....-.+ ....++|.+|.|++|.+.||+--.|++|.+++..... ....
T Consensus 28 vFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 3343 333333334455565565542 1222222 2356699999999999999999999999999984321 1122
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC----CeeeEEeecCceEEEEecCCCEEEEEEc--CCeEEEEE
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----GSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSILD 791 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~----~~~~~~~~~~~~~v~~sp~~~~ll~~~~--dg~I~i~D 791 (918)
..+..+..|..++|....+ +. ... +..|-+|-+.. -+.+++.+..+....|.++...++.++. .+++.-+-
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 3333455688899986633 32 222 34456665433 2345566677788888888777665554 34444444
Q ss_pred CCCc
Q 002471 792 AETQ 795 (918)
Q Consensus 792 ~~t~ 795 (918)
++++
T Consensus 184 ~~~~ 187 (657)
T KOG2377|consen 184 FRAG 187 (657)
T ss_pred Eeec
Confidence 4443
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=93.60 E-value=1.4 Score=51.85 Aligned_cols=177 Identities=7% Similarity=-0.033 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce--eeEeccCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCCCCceeEEe
Q 002471 649 DGKLLATGGHDK-----KAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 719 (918)
Q Consensus 649 dg~~Latgs~Dg-----~V~iwd~~~~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~V~Iwdl~~~~~~~~~~ 719 (918)
++.++++||.++ ++..||..+.+- +..+.........+. -++...+.|+.+ ..+..||..+... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 345667776543 566788765432 222222111222222 367777777764 4578888765221 111
Q ss_pred ccCCCCee--EEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeeEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002471 720 MGHSASVM--SLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 720 ~~h~~~V~--sl~fsp~~~~ll~sgs~Dg---~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
..-..+.. +++.. ++.+.+.|+.++ .+..||.++.+-...- ...........-++.+++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 11111111 12222 355666777553 4778888776543321 11111111112234444443 45778888
Q ss_pred CCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002471 793 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 835 (918)
Q Consensus 793 ~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s 835 (918)
++.+-.. .+....... +++. -++++.++|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 7664332 221111222 2222 256777766642 455666554
No 460
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.60 E-value=7.4 Score=43.59 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=23.1
Q ss_pred eEEEEECCCCcEEEEcccCCC-eEEEEEeCCCCEEEEEecCC
Q 002471 872 SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK 912 (918)
Q Consensus 872 ~I~vwd~~~~~~~~~~~h~~~-V~~la~spdg~~Lasgs~Dg 912 (918)
.+.+||..+.+...+...... -.+.+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 577888887664433222222 12233445777888887653
No 461
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.36 E-value=0.24 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 462
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.30 E-value=22 Score=42.78 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=78.3
Q ss_pred eecCceEEEEecCCCEEEEEEcCCeEEEEECCCce--EEEEecC-CCCCeEEEEEcC-----C-CCEEEEEeC---C--e
Q 002471 762 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQG-HTKPIDSVCWDP-----S-GELLASVSE---D--S 827 (918)
Q Consensus 762 ~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~-h~~~V~si~~sp-----d-g~~Las~s~---d--~ 827 (918)
++..+..+.+..++..+++....|.|.+||...+. .+..+.. +...|.--+|-+ + ..++++.+. + .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 45667778899999999999999999999993322 1112221 221111112222 2 234444333 2 7
Q ss_pred EEEEECCCCCCcceEEEec---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEEE
Q 002471 828 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA 897 (918)
Q Consensus 828 I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~---~~~---~h~-~~V~~la 897 (918)
.+++.+... ...+.++. .+......+.|.-....|+.- .++.|.+|++...+.. .+. ... ..+.++.
T Consensus 208 ykL~~l~~~--~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNE--SSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccC--CcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 888988221 12222222 222223333333333334444 7789999999887655 222 111 2344444
Q ss_pred EeCCCCEEEEEecCCcEEEeC
Q 002471 898 VSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IWd 918 (918)
--...+.|++ .+..|++.|
T Consensus 285 ~~s~nRvLLs--~~nkIyLld 303 (670)
T PF10395_consen 285 PPSPNRVLLS--VNNKIYLLD 303 (670)
T ss_pred cCCCCeEEEE--cCCEEEEEe
Confidence 3223344444 355677654
No 463
>PLN02193 nitrile-specifier protein
Probab=93.13 E-value=8.8 Score=45.09 Aligned_cols=148 Identities=6% Similarity=-0.059 Sum_probs=72.6
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeeEEeec-----Cce-EEEEecCCCEEEEEEcC-----CeEEEEECCCceEE
Q 002471 735 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 798 (918)
Q Consensus 735 ~~~ll~sgs~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~ 798 (918)
++.+++.|+.+ ..+.+||+.+.+....... ... ......++..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 35566677655 4588899887654432111 111 11122334445555543 35778888776433
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEEEE
Q 002471 799 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 866 (918)
Q Consensus 799 ~~l~-----~h~~~V~si~~spdg~~Las~s~-----d~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp~g~~l~s 866 (918)
..-. ..... ..++. -++++++.++. +.|.+||+.+.. ...+.... .......++ ..-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFAS-AAVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEE-EEECCEEEEE
Confidence 2110 01111 12222 24666666553 258899987642 22222110 001112222 2335566667
Q ss_pred EEcC--------------CeEEEEECCCCcEEEE
Q 002471 867 IGCY--------------QSLELWNMSENKTMTL 886 (918)
Q Consensus 867 ~s~d--------------g~I~vwd~~~~~~~~~ 886 (918)
|+.+ ..+.+||..+.+...+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 7643 2588999988776543
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.77 E-value=12 Score=42.46 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=9.4
Q ss_pred cEEEEEcCCCeee
Q 002471 747 EIRYWSINNGSCT 759 (918)
Q Consensus 747 ~I~iwdl~~~~~~ 759 (918)
.|.+||..+.+-.
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888998876543
No 465
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.71 E-value=8.1 Score=43.91 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=20.1
Q ss_pred EEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecC
Q 002471 873 LELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHD 911 (918)
Q Consensus 873 I~vwd~~~~~~~~~~~h~~-~V~~la~spdg~~Lasgs~D 911 (918)
+.+||..+++...+..-.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678888776542221111 11222344467777777753
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.65 E-value=4 Score=41.77 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=76.1
Q ss_pred CEEEEEEcCCeEEEEECCC--ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEE---ECCC-CCCcce-
Q 002471 776 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVW---TVGS-GSEGEC- 841 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t--~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iw---dl~s-~~~~~~- 841 (918)
+.++++...+.|.+|++.. ...+.+|.. -+.|..+.++..|+||++--.+ .+|+| +... .....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5566667788899999883 345555553 4788899999999999987543 34554 3221 111111
Q ss_pred --------------------EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------EEE----ccc-
Q 002471 842 --------------------VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------MTL----TAH- 889 (918)
Q Consensus 842 --------------------i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~-------~~~----~~h- 889 (918)
+-++.. .....+++..|-...|++|+. +.+.||.+..... +.+ ..|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 111111 334566666665555666554 5677776644332 111 112
Q ss_pred CC-CeEEEEEeCCCCEEEEEecCCcEEEe
Q 002471 890 EG-LIAALAVSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 890 ~~-~V~~la~spdg~~Lasgs~Dg~I~IW 917 (918)
.+ .+..++|. +.|||..+ |-.++|+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vl 211 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVL 211 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEE
Confidence 22 24455554 34787766 4456665
No 467
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.65 E-value=27 Score=41.43 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=106.8
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCc-eeEEeccC-CCCeeEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeeEEee-
Q 002471 689 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 763 (918)
Q Consensus 689 spdg~~Lasgs~Dg~V~Iwdl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~sgs~--Dg~I~iwdl~~~~~~~~~~- 763 (918)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222233 5566788888776345556665 5556666644445555554
Q ss_pred -cCceEEEEecC----CC------EEEEEEc---CCeEEEEECCCceE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002471 764 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 824 (918)
Q Consensus 764 -~~~~~v~~sp~----~~------~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~si~~sp-dg~~Las~s 824 (918)
+++..+++... .. .+++++. +|.++++.-.-+-. ....... -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 35555555422 12 6666654 67888874321111 1111111 22344444322 255888777
Q ss_pred CCeEEEEECCCCCCcceEEE-----eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-E-cccCCCeEEEE
Q 002471 825 EDSVRVWTVGSGSEGECVHE-----LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-L-TAHEGLIAALA 897 (918)
Q Consensus 825 ~d~I~iwdl~s~~~~~~i~~-----~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~-~-~~h~~~V~~la 897 (918)
.+.-+|+.+..++....+.. +......+.+..+. +..++=.. ...|++.+...++... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 77555666642111122211 11112222222222 33333333 3468888887777663 2 23344455555
Q ss_pred EeCCCCEEEEEecCCcEEEe
Q 002471 898 VSTETGYVASASHDKFVKLW 917 (918)
Q Consensus 898 ~spdg~~Lasgs~Dg~I~IW 917 (918)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3355555556666554
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.51 E-value=6.2 Score=45.61 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECC-------CCceeeEe-ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 710 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~-------~~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~ 710 (918)
....+..|...|..+++ .|..++||+.. ++.....+ .++...+.+ .+++....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~--~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~--------v~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIV--VDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPG--------VGLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEE--ETTEEEEEE--SS--GG--EEEEE-----------S--------EEEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEE--ECCEEEEEeccCCCCCcCcccccceecCCCCCCCce--------EEEEEcCCCCEEecccc
Confidence 34555556555544444 37899999984 23333333 333333333 24555668899999754
Q ss_pred C
Q 002471 711 N 711 (918)
Q Consensus 711 ~ 711 (918)
.
T Consensus 97 ~ 97 (422)
T PF08801_consen 97 S 97 (422)
T ss_dssp T
T ss_pred h
Confidence 3
No 469
>PLN02153 epithiospecifier protein
Probab=92.40 E-value=7.6 Score=43.43 Aligned_cols=40 Identities=3% Similarity=0.006 Sum_probs=21.7
Q ss_pred CeEEEEECCCCcEEEEccc----CCCeEEEEEeCCCCEEEEEec
Q 002471 871 QSLELWNMSENKTMTLTAH----EGLIAALAVSTETGYVASASH 910 (918)
Q Consensus 871 g~I~vwd~~~~~~~~~~~h----~~~V~~la~spdg~~Lasgs~ 910 (918)
+.|.+||..+.+-..+... .......+...++++++.|+.
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 4688999988876644321 111111122335667777774
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.33 E-value=4.4 Score=38.19 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=74.2
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCC-------ceeEEeccCCCCeeEEEEcC----CCCeEEEEEeCCCcEEEEE
Q 002471 684 TDVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWS 752 (918)
Q Consensus 684 ~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~-------~~~~~~~~h~~~V~sl~fsp----~~~~ll~sgs~Dg~I~iwd 752 (918)
..-+|......|++++.-|.|.|++..... ..++.+ .....|++|+--+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666788999999999999876422 123333 3566788886544 2344665555 67899999
Q ss_pred cCCCeee--EEeecCceEEEEec---CCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 753 INNGSCT--RVFKGGTAQMRFQP---HLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 753 l~~~~~~--~~~~~~~~~v~~sp---~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
+....-+ +.+..++.++.+-. ....++..+.+..|.-||.+-.+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9876543 34556666665432 2345666677777777777666655544
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=4.9 Score=40.65 Aligned_cols=169 Identities=13% Similarity=0.133 Sum_probs=90.7
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCCceeEEeccCCCC
Q 002471 649 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS 725 (918)
Q Consensus 649 dg~~Latgs~--Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~V~Iwdl~~~~~~~~~~~~h~~~ 725 (918)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..- =.||.-.++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 4566666654 3479999999888776654321111111111113333332 3378888888886 34444433 3344
Q ss_pred eeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee----c----CceEEEEecCCCEEEEE-EcCCeEEEEECCCce
Q 002471 726 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G----GTAQMRFQPHLGRYLAA-AAENVVSILDAETQA 796 (918)
Q Consensus 726 V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~----~----~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~ 796 (918)
=+.++. ++.+++ .++...+++.-|.++.....+.. + ....+.|. .+.+++- -.+..|...|..+|+
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 555654 455566 55556677777776654333321 1 11122222 2333333 235566677777777
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEe
Q 002471 797 CRLSLQ------------GHTKPIDSVCWDPSGELLASVS 824 (918)
Q Consensus 797 ~~~~l~------------~h~~~V~si~~spdg~~Las~s 824 (918)
.+..+. .+....+.|++.|++..|+..+
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665542 2445678899999885444433
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=3.3 Score=52.76 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=107.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 717 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~ 717 (918)
.....++|++.-.++|.+..+|.|++|-..-.+.+.....-. -.+..+.|-.....+.....+..+.+|.....+.+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 356678899999999999999999999754333222221111 01222222222223333344555666655432111
Q ss_pred EeccCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEe----ecCceEE-EEecCCCEEEEEEcCCeEEEEEC
Q 002471 718 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDA 792 (918)
Q Consensus 718 ~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~----~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~ 792 (918)
-+...+++....+- -.++.+ ..+.+++||+.-....... ....... .+.+..-.+..--.+-.-.++-+
T Consensus 114 ---~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ---ecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 12223333332221 112244 7888888887543211111 1111000 11110000000000000011111
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002471 793 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 872 (918)
Q Consensus 793 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 872 (918)
.... ..+..+..++.+..+......+..+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 1001 1222345556666666566666666666666776543311 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002471 873 LELWNMSENKT 883 (918)
Q Consensus 873 I~vwd~~~~~~ 883 (918)
+.+||+..++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.14 E-value=26 Score=40.06 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=59.3
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCce-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002471 765 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 837 (918)
Q Consensus 765 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~ 837 (918)
....+.+.+++..+++ +..|.+..- ...++ ....+.. ....+..+.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~-g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLL-TRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEE-eCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 3456677766655554 455655443 22222 1222211 1235889999998888888777644443 33343
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 876 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vw 876 (918)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3333322222245677888877655 5666677766554
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=13 Score=42.48 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------CCce---eEEec--------cCCCCeeEEEEcCCC--CeEE
Q 002471 681 SLITDVRFSPSMPRLATSSFDKTVRVWDADN--------PGYS---LRTFM--------GHSASVMSLDFHPNK--DDLI 739 (918)
Q Consensus 681 ~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--------~~~~---~~~~~--------~h~~~V~sl~fsp~~--~~ll 739 (918)
-.|..|..++.|..++.++.+|.+.++=.+. .++. .+++. ...-.+.-++|+|+. +..+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3477888999999999999999655442110 1211 11111 112235567888875 4344
Q ss_pred EEEeCCCcEEEEEcCCCeeeEE
Q 002471 740 CSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 740 ~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
..-..|.+||+||+...+.+..
T Consensus 184 ~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred EEEecCcEEEEEecCCcchhhc
Confidence 4566689999999877655533
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.01 E-value=0.022 Score=63.42 Aligned_cols=141 Identities=20% Similarity=0.293 Sum_probs=94.9
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEE
Q 002471 767 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHE 844 (918)
Q Consensus 767 ~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~ 844 (918)
....|.+.+..+++++.+..|..||-...... ... .......++|+.++..++...+. .+.+||+.+.........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34567777777888888888888886543222 111 33455678899888855554443 899999976422111111
Q ss_pred eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEecCCc
Q 002471 845 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 913 (918)
Q Consensus 845 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~-h~~~V~~la~spdg~~Lasgs~Dg~ 913 (918)
+ ...-.-+.|++.+..++.+...+.+.||+..+.+.+...+ |...+++++|.+.+ +++.++.|..
T Consensus 116 --g-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 116 --G-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred --C-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 1 1111125799999999999999999999999888775555 99999999999887 4555555543
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.98 E-value=4.3 Score=48.46 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=92.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeEecc-CCC------CeEEEEECCCCCEEEEEeC-C---CeE
Q 002471 638 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE-HSS------LITDVRFSPSMPRLATSSF-D---KTV 704 (918)
Q Consensus 638 ~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~--~~~~~l~~-h~~------~V~~l~fspdg~~Lasgs~-D---g~V 704 (918)
.+.|..|.|..+++.+++.-.+|.|.+||...+ +.+..+.. +.. -|.....-....++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999322 22112221 222 2222221122345544444 2 246
Q ss_pred EEEeCCCCCceeEEec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecC-------ceEEEEecC
Q 002471 705 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 774 (918)
Q Consensus 705 ~Iwdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~sp~ 774 (918)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+++.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788732222232222 122222333333333434322 6889999999887766665422 233455554
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEec
Q 002471 775 LGRYLAAAAENVVSILDAETQACRLSLQ 802 (918)
Q Consensus 775 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 802 (918)
...-+.-+.++.|+++|+.-...+.++.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444555677899999987655555444
No 477
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.97 E-value=33 Score=40.93 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=104.1
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEEEEeCCCc----EEEEE
Q 002471 682 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 752 (918)
Q Consensus 682 ~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg~----I~iwd 752 (918)
.+-.++.+||.+++|-+-+ .=+++|-|+.++......+. +...+++|..|+..++++...++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556778899988876633 34689999988554444333 345678999999999888776652 33333
Q ss_pred cCC--CeeeEEeecC--c--eEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEE
Q 002471 753 INN--GSCTRVFKGG--T--AQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLA 821 (918)
Q Consensus 753 l~~--~~~~~~~~~~--~--~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~La 821 (918)
+.+ ..-...+... . ..+.-+....+++.... ...+++++......... .....+--..+ ...+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~--eh~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSV--EHGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEee--eecCcEEE
Confidence 333 1111222221 1 22223344455555543 34677777765432211 11111111111 12244333
Q ss_pred EEeCC---eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 002471 822 SVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 884 (918)
Q Consensus 822 s~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~vwd~~~~~~~ 884 (918)
.-+.+ ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 33322 455555433111122334444555555555666667777776654 7888888876654
No 478
>PHA02790 Kelch-like protein; Provisional
Probab=91.93 E-value=5.9 Score=46.68 Aligned_cols=167 Identities=8% Similarity=-0.103 Sum_probs=79.0
Q ss_pred CeEEEEEeCCC-----cEEEEEcCCCeeeEEe--ecCc-eEEEEecCCCEEEEEEcC--CeEEEEECCCceEEE--EecC
Q 002471 736 DDLICSCDGDG-----EIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE--NVVSILDAETQACRL--SLQG 803 (918)
Q Consensus 736 ~~ll~sgs~Dg-----~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~ll~~~~d--g~I~i~D~~t~~~~~--~l~~ 803 (918)
+.+++.|+.++ .+..||..+.+....- .... .......++..+++|+.+ ..+..||..+.+-.. .+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666676542 5777888876543322 1111 111123344455555543 468888877654322 1211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002471 804 HTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 879 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~ 879 (918)
..... +++ .-+|++.+.|+.+ .+..||.++. ....+..+...... .+ +..-++...++| |.+.+||..
T Consensus 352 ~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~-~~-~~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 352 PRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK-SC-ALVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc-ce-EEEECCEEEEEC---CceEEecCC
Confidence 11111 222 2357777776643 4778887654 11111111111111 12 222345444444 357889998
Q ss_pred CCcEEEEcccC--CCeEEEEEeCCCCEEEEEecC
Q 002471 880 ENKTMTLTAHE--GLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 880 ~~~~~~~~~h~--~~V~~la~spdg~~Lasgs~D 911 (918)
+++...+..-. ..-.+++ .-++++.+.||.+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred CCcEeEcCCCCCCccccEEE-EECCEEEEECCcC
Confidence 87765433211 1111222 2466777777754
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.89 E-value=2.8 Score=44.25 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=75.6
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCC-cceEEE--eccCCCceEEEEEeC
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVHE--LSCNGNKFHSCVFHP 859 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~-~~~i~~--~~~~~~~i~~i~~sp 859 (918)
-.+||+.+++..-........+.+-.+.+||++|.+|+.. .+++|+...... ...... .-.......++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888876543322233344445678999999998863 688988654111 111110 012234455666778
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEE--cc------cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002471 860 TYPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 915 (918)
Q Consensus 860 ~g~~l~s~s~dg-~I~vwd~~~--~~~~~~--~~------h~~~V~~la~spdg~~Lasgs~Dg~I~ 915 (918)
||+.|++|+.+. ...+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566776532 222211 11 111222455679999999988776554
No 480
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.86 E-value=3.7 Score=49.59 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=48.0
Q ss_pred CCCeEEEEEc--CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC------CEEEEEEcCCeEEE
Q 002471 805 TKPIDSVCWD--PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY------PSLLVIGCYQSLEL 875 (918)
Q Consensus 805 ~~~V~si~~s--pdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g------~~l~s~s~dg~I~v 875 (918)
...+++++++ ...++||+++.. .|.||-+...........-..+...|.+|.|-++. .+|++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3478889988 677788888877 77776554321111111111256678888886644 26778888898888
Q ss_pred EEC
Q 002471 876 WNM 878 (918)
Q Consensus 876 wd~ 878 (918)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 777
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.72 E-value=9.2 Score=42.37 Aligned_cols=106 Identities=9% Similarity=0.054 Sum_probs=51.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eeEec---cCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCC
Q 002471 649 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 712 (918)
Q Consensus 649 dg~~Latgs~D-----g~V~iwd~~~~~~---~~~l~---~h~~~V~~l~fspdg~~Lasgs~-----Dg~V~Iwdl~~~ 712 (918)
++.+++.|+.+ ..|..||+.+.+- ...+. .......++.+ ++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3566777765442 12221 11111112222 5666677764 245888888763
Q ss_pred CceeE-EeccCCCCeeEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCee
Q 002471 713 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSC 758 (918)
Q Consensus 713 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~sgs~Dg----~I~iwdl~~~~~ 758 (918)
..... .+... ......+..- ++.+++.|+.++ .+.+||+++.+.
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence 32211 11111 1111111112 345666777654 356888887654
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.54 E-value=34 Score=40.24 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=61.2
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCCceeEEeccCCCC---eeEEEEcCCCCeEEEEEe-------C-----CCcEEE
Q 002471 686 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPNKDDLICSCD-------G-----DGEIRY 750 (918)
Q Consensus 686 l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~~~~h~~~---V~sl~fsp~~~~ll~sgs-------~-----Dg~I~i 750 (918)
+.+.++|.+++... ..++.+|+. ++.+..+...... =.++.+.|+|+.|+++.. . +..|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778888877665 778888886 3444433321111 234677788776664441 0 123555
Q ss_pred EEcCCCeeeEEee------------------------------cCceEEEEecCCCEEEEEEcC-CeEEEEECCCceEEE
Q 002471 751 WSINNGSCTRVFK------------------------------GGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRL 799 (918)
Q Consensus 751 wdl~~~~~~~~~~------------------------------~~~~~v~~sp~~~~ll~~~~d-g~I~i~D~~t~~~~~ 799 (918)
+| .+|+.+..+. .|..++.+.+.++.+++++.. ..|..+|.++++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 55 5555443321 145678888977888888875 489999999998888
Q ss_pred EecCC
Q 002471 800 SLQGH 804 (918)
Q Consensus 800 ~l~~h 804 (918)
.+..+
T Consensus 308 ilg~~ 312 (477)
T PF05935_consen 308 ILGPP 312 (477)
T ss_dssp EES-S
T ss_pred EeCCC
Confidence 77654
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=2.1 Score=53.96 Aligned_cols=160 Identities=17% Similarity=0.278 Sum_probs=87.1
Q ss_pred CCCcEEEEECCCCceeeEeccCCCCeEEEEE--------CCCCCEEEEEeCCCeEEEEeCCCCCc--eeEEec------c
Q 002471 658 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPGY--SLRTFM------G 721 (918)
Q Consensus 658 ~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~V~Iwdl~~~~~--~~~~~~------~ 721 (918)
.|+.+.+|+.+++.....+.+-+..|..|.. .|.=++|++.+.--.|.|+-+.-... ....+. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5889999999998888888888888887764 33334555555555577775532111 111111 2
Q ss_pred CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002471 722 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 801 (918)
Q Consensus 722 h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 801 (918)
....|.||....+|+ +| -++.|| .+|.+--...-.-|......++.+ .+.-..+. .. +..+
T Consensus 177 dg~~V~~I~~t~nGR-IF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt--------~s~ls~lv------Ps-~~~~ 237 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLT--------KSVLSSLV------PS-LLSV 237 (1311)
T ss_pred CCceEEEEEeccCCc-EE-EeecCC--CEEEEEEeccCchhhcccccccCc--------hhHHHHhh------hh-hhcC
Confidence 245688888666654 55 345566 444432110000000000000000 00000000 00 1112
Q ss_pred -cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002471 802 -QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 836 (918)
Q Consensus 802 -~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 836 (918)
..+.++|..+..+....++.+-++. +|.+||+...
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2467789999998888888888877 8999999763
No 484
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=91.34 E-value=0.44 Score=55.33 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=54.3
Q ss_pred ccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC-cEEEEECCCCcee-----eEeccC-----CCCeEEEEECCCCCE
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSK-----TNLEEH-----SSLITDVRFSPSMPR 694 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg-~V~iwd~~~~~~~-----~~l~~h-----~~~V~~l~fspdg~~ 694 (918)
.++..+..++.|..+|..++|.+.|.+|++++..| .|.++.+....+. ..+..| ...|-.++|+....+
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 36777888999999999999999999999998765 4666654321111 111111 234556788888888
Q ss_pred EEEEeCCCe
Q 002471 695 LATSSFDKT 703 (918)
Q Consensus 695 Lasgs~Dg~ 703 (918)
++.++.+|+
T Consensus 383 r~~gsc~Ge 391 (788)
T KOG2109|consen 383 RTAGSCEGE 391 (788)
T ss_pred EeecccCCC
Confidence 888887764
No 485
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.16 E-value=31 Score=42.11 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=41.5
Q ss_pred eccCCCCeEEEEECCCCCEEEEEeCCCe--EEEEeCCCCCceeEEeccCCCCeeEEEEcCCCCeEEE
Q 002471 676 LEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 740 (918)
Q Consensus 676 l~~h~~~V~~l~fspdg~~Lasgs~Dg~--V~Iwdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 740 (918)
...+...+..+.|+|++..++..+.++. ..+|-+...+ .+..+...|..+.|++++..+++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 4456778899999999999988874332 4555444322 33345566777888888877664
No 486
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.97 E-value=17 Score=45.99 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=13.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC
Q 002471 804 HTKPIDSVCWDPSGELLASVSE 825 (918)
Q Consensus 804 h~~~V~si~~spdg~~Las~s~ 825 (918)
|-..+.++|.+|||.++++-..
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCC
Confidence 4455667777777775554433
No 487
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.91 E-value=9.9 Score=47.05 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCCceeEEecc--CCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeeEEee
Q 002471 701 DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 763 (918)
Q Consensus 701 Dg~V~Iwdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~~~~~~~~~ 763 (918)
+|.++.|++...+..+..+.. -.+.| .+.+|..++++ ++....+++||+...+.++..+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e 971 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCE 971 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEE--EecccEEEEeeCChHHHHhhhh
Confidence 455777776554554433332 22333 34455556555 3345788888888776665543
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.79 E-value=31 Score=38.48 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=29.8
Q ss_pred CCCEEEEEeCC-CcEEEEECCC----CceeeEecc-CCCCeEEEEECCCCCEEEEEeCC-----------CeEEEEeCCC
Q 002471 649 DGKLLATGGHD-KKAVLWHTDT----LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-----------KTVRVWDADN 711 (918)
Q Consensus 649 dg~~Latgs~D-g~V~iwd~~~----~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-----------g~V~Iwdl~~ 711 (918)
++++.++|+.. ..+.++|++. ...+..+.. .......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 45555555543 4567777632 222222221 111122222 256677777753 2477788775
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.75 E-value=3.9 Score=48.18 Aligned_cols=176 Identities=15% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCceeEE
Q 002471 639 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 718 (918)
Q Consensus 639 ~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~~~~~~~~ 718 (918)
..+++|.-+|.|..++.+..||.|++|++...+..+... ...+-..+.|...| |+++..|..+.-|.-+ +..-..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d--gvvqqq 89 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED--GVVQQQ 89 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc--Ccchhh
Confidence 357788888999999999999999999986544322221 12233345555433 6677778888888654 222222
Q ss_pred ec---cCCCCeeEEEEcCCCCeEEEEEeCCCcEEEEEcCC--CeeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002471 719 FM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 793 (918)
Q Consensus 719 ~~---~h~~~V~sl~fsp~~~~ll~sgs~Dg~I~iwdl~~--~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 793 (918)
|. .......++...|...+++ |.--|.|.-+|.-- +-....|. ++-..-..|.+-|+.
T Consensus 90 fdyndqsekefss~~cdptaqnvv--gtlcggv~q~dcclrr~i~knkfe---------------~tyv~pshvilkdls 152 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV--GTLCGGVEQFDCCLRRGILKNKFE---------------LTYVAPSHVILKDLS 152 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh--hhhccceeeehHHHHhHHHhccce---------------eEEeccceeeeeccc
Confidence 21 1122344455555544433 44445565555311 11111111 111112344555555
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002471 794 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 836 (918)
Q Consensus 794 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~ 836 (918)
++.....+....-.|..+.+--..+|++.-...+|.|=|+++.
T Consensus 153 n~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~ 195 (1636)
T KOG3616|consen 153 NDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESN 195 (1636)
T ss_pred CCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccc
Confidence 5544433332233455555555566777666668888888764
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.72 E-value=38 Score=39.30 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.7
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce--eeEec-----cCCCCeEEEEECCCC
Q 002471 634 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 692 (918)
Q Consensus 634 l~~H~~~V~~l~fspdg~~Latgs~Dg~V~iwd~~~~~~--~~~l~-----~h~~~V~~l~fspdg 692 (918)
+-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344566789999999998777765579999998654432 22121 125678999999874
No 491
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=90.54 E-value=2.2 Score=52.35 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=52.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCC--CceeeEe---ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q 002471 641 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNL---EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 711 (918)
Q Consensus 641 V~~l~fspdg~~Latgs~Dg~V~iwd~~~--~~~~~~l---~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~ 711 (918)
-.|+........+++|..-|.+.+|+... +..+... .++...+..+.|.|+.+.++.+-.-|...+|....
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 45566667788999999999999998762 3222222 23444788889999999999998888899997754
No 492
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.45 E-value=33 Score=38.13 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=83.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe------EEEEeCCCCC---cee-----EEeccCCC--------CeeEEEEcCCCCe
Q 002471 680 SSLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDD 737 (918)
Q Consensus 680 ~~~V~~l~fspdg~~Lasgs~Dg~------V~Iwdl~~~~---~~~-----~~~~~h~~--------~V~sl~fsp~~~~ 737 (918)
-+.+..|.+.+++..+++.+++|. +..+++.... ..+ ..+....+ ..-+|++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 355778888876667777777777 5555554310 011 11111111 34478885554 4
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeeEEe------------------ecCceEEEEecCCCEEEEEEc-----CC---
Q 002471 738 LICSCDGD------GEIRYWSINNGSCTRVF------------------KGGTAQMRFQPHLGRYLAAAA-----EN--- 785 (918)
Q Consensus 738 ll~sgs~D------g~I~iwdl~~~~~~~~~------------------~~~~~~v~~sp~~~~ll~~~~-----dg--- 785 (918)
++++.-.+ ..|+.++.. ++....+ ..+...+++++++..++++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 55466556 678888876 5544333 123466899999997777654 22
Q ss_pred --------eEEEEECCC-c----eEEEEecC-----CCCCeEEEEEcCCCCEEEEE
Q 002471 786 --------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLASV 823 (918)
Q Consensus 786 --------~I~i~D~~t-~----~~~~~l~~-----h~~~V~si~~spdg~~Las~ 823 (918)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244456654 2 22333332 35678899999999977753
No 493
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.44 E-value=55 Score=41.85 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=41.1
Q ss_pred ceeeeeeecCCCCeEEEEEcc--CCC-EE----EEEeCCCcEEEEECCCCceeeEeccCCCCeEEEEEC---CC-CCEEE
Q 002471 628 FKEANSVRASTSKVICCHFSS--DGK-LL----ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS---PS-MPRLA 696 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~l~fsp--dg~-~L----atgs~Dg~V~iwd~~~~~~~~~l~~h~~~V~~l~fs---pd-g~~La 696 (918)
........||...|.|..+.- ++. +| ++.+-||.+.|=|..- ++.+.......+-+.+. +. .-+||
T Consensus 337 vitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~A 413 (1899)
T KOG4659|consen 337 VITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIA 413 (1899)
T ss_pred eEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEE
Confidence 334444568888888877653 222 22 2455789998877542 22222111111112222 11 12455
Q ss_pred EEeCCCeEEEEeCCC
Q 002471 697 TSSFDKTVRVWDADN 711 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~ 711 (918)
..-.||++.|=|..+
T Consensus 414 vsPvdgtlyvSdp~s 428 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLS 428 (1899)
T ss_pred ecCcCceEEecCCCc
Confidence 555677776666554
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=2.9 Score=47.55 Aligned_cols=9 Identities=22% Similarity=0.911 Sum_probs=6.2
Q ss_pred eEEEEeCCC
Q 002471 703 TVRVWDADN 711 (918)
Q Consensus 703 ~V~Iwdl~~ 711 (918)
.+..||-+.
T Consensus 62 ~lf~Wd~~d 70 (741)
T KOG4460|consen 62 ELFLWDGED 70 (741)
T ss_pred EEEEEecCc
Confidence 677777664
No 495
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.19 E-value=3 Score=50.33 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.9
Q ss_pred eEEEEEcc--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeeEeccCCCCeEEEEEC--CCCCEEE
Q 002471 641 VICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLA 696 (918)
Q Consensus 641 V~~l~fsp--dg~~Latgs~Dg~V~iwd~~~-------~-------------~~~~~l~~h~~~V~~l~fs--pdg~~La 696 (918)
|+-|.... +..+|+.|..||.|.+|.+++ . ++...+. ....++.|+++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 446899999999999997631 0 0112222 34478999998 7788889
Q ss_pred EEeCCCeEEEEeCCCC--CceeEEeccCCCCeeEEEEcCCC--C---eEEEEEeCCCcEEEEEc
Q 002471 697 TSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK--D---DLICSCDGDGEIRYWSI 753 (918)
Q Consensus 697 sgs~Dg~V~Iwdl~~~--~~~~~~~~~h~~~V~sl~fsp~~--~---~ll~sgs~Dg~I~iwdl 753 (918)
+++....|.||-.... ......-..|...|-+|+|.++. . ..|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888865431 11111122366789999998764 2 26778889999999888
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.18 E-value=33 Score=37.69 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=90.0
Q ss_pred CCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCce---------------eeEeccCCCCeEEEEECCCC-CEEEEEe
Q 002471 637 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 699 (918)
Q Consensus 637 H~~~V~~l~fspdg~~Latgs-~Dg~V~iwd~~~~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 699 (918)
+...|+++...+.-+.|++-+ ....|+++++..... ....-.|......+.+.... ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 455899999998777766654 333499999853221 01111343333333333222 2344555
Q ss_pred CCCeEEEEeCCCCCceeEEec-------cCCCCeeEEEEcCCC-CeEEEEEeCCCcEEEEEcCC--CeeeE-----Eeec
Q 002471 700 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR-----VFKG 764 (918)
Q Consensus 700 ~Dg~V~Iwdl~~~~~~~~~~~-------~h~~~V~sl~fsp~~-~~ll~sgs~Dg~I~iwdl~~--~~~~~-----~~~~ 764 (918)
...+|.++...........++ .-..++..+..+++. ...++.|+..+...++++.. ..... ....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 566777765543211111111 112233333333321 22444555433444455432 11000 0011
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCC-ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002471 765 ---GTAQMRFQPHLGRYLAAAAENVVSILDAET-QA-CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 836 (918)
Q Consensus 765 ---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~ 836 (918)
...++...++ +.++.+-.+. ..+.|... .. ....+. -.....++++. ..+|++...+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 1122222222 3444444333 33444432 11 111121 23445667776 46777777779999999887
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.75 E-value=9.1 Score=36.14 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=69.1
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCc--------eeeEeccCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEe
Q 002471 642 ICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWD 708 (918)
Q Consensus 642 ~~l~fspdg~~Latgs~Dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~V~Iwd 708 (918)
..-.|......|++++.-|+|.|++..... .+..+ .-...|++|+--+ +...|+.|+ ...|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344566666788899999999999865322 22233 3455677775433 234566666 55699999
Q ss_pred CCCCCceeEEeccCCCCeeEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeeEE
Q 002471 709 ADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRV 761 (918)
Q Consensus 709 l~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~sgs~Dg~I~iwdl~~~~~~~~ 761 (918)
++.... ..++.-.+.|.+|.+-. ....+++.| .+..|.-||.+..+...+
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 987332 22334456677777632 123355444 467777777765554433
No 498
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=89.33 E-value=69 Score=40.24 Aligned_cols=259 Identities=9% Similarity=0.053 Sum_probs=126.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCce---------eeEeccCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---
Q 002471 644 CHFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--- 711 (918)
Q Consensus 644 l~fspdg~~Latgs~Dg~V~iwd~~~~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~V~Iwdl~~--- 711 (918)
-.+-++...+++-+.+|.|+-.++.+... ...++. .+.+..+........|+..+.+|.+.......
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34456667888899999998886653321 111222 33455555555566677777778766655432
Q ss_pred C-----Ccee---EEeccCCCCeeEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCeee-------EEeecC--ceEEEEec
Q 002471 712 P-----GYSL---RTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCT-------RVFKGG--TAQMRFQP 773 (918)
Q Consensus 712 ~-----~~~~---~~~~~h~~~V~sl~fsp-~~~~ll~sgs~Dg~I~iwdl~~~~~~-------~~~~~~--~~~v~~sp 773 (918)
. +..+ ..+.....-|.++.+.. +....++..+.+|.|+..++...... ..++.. ...+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 1 1111 11222222344444322 12234557888999999887543211 111111 22222333
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------C
Q 002471 774 HLGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------S 837 (918)
Q Consensus 774 ~~~~ll~~~~dg~I~i~D~~t---------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------~ 837 (918)
....+++.+..|.+..+.+.. |.....+.. ...|.++....+...++..+.. .++...+... .
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 445677777777666665432 122222222 2334444443444444544444 5665554311 1
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002471 838 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 907 (918)
Q Consensus 838 ~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~~h~~~V~~la~spdg~~Las 907 (918)
.......+......+..+....+...++..+.+|.+..++...-.. ...-...|..+....+ ..+++
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~--~gR~a~GVk~i~L~~~-D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE--QGRNTQGVRLIRLDED-DKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc--cccCCCCeeeeeeCCC-CEEEE
Confidence 1122223333234444444444445677778888777777653221 1112334566665433 34443
No 499
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.17 E-value=2.2 Score=44.45 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc---------------ccCCCeEEEEEeCCCCEEEEEecCCcEEEeC
Q 002471 854 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---------------AHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 854 ~i~~sp~g~~l~s~s~dg~I~vwd~~~~~~~~~~---------------~h~~~V~~la~spdg~~Lasgs~Dg~I~IWd 918 (918)
.+.+...+.+|++.+.+|.+++||+.+++.+.-. .....|..+.++.+|.-|++-+. |..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
No 500
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.09 E-value=2.5 Score=44.06 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred eeeEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe------c--------CCCCCeEEEEEcCCCCEEEE
Q 002471 757 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------Q--------GHTKPIDSVCWDPSGELLAS 822 (918)
Q Consensus 757 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~--------~h~~~V~si~~spdg~~Las 822 (918)
..+..+.-+...+.+...+.++++.+.+|.+++||+.+++.+..- - .....|..+.++.+|.-|++
T Consensus 4 rl~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 4 RLLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred cccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Q ss_pred EeCCeEEEEECC
Q 002471 823 VSEDSVRVWTVG 834 (918)
Q Consensus 823 ~s~d~I~iwdl~ 834 (918)
-+.+..+.|+..
T Consensus 84 lsng~~y~y~~~ 95 (219)
T PF07569_consen 84 LSNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEeccc
Done!