Query 002471
Match_columns 918
No_of_seqs 1298 out of 3993
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:25:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002471.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1192-1195//hhsearch_pdb/002471hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 349.7 41.9 284 630-918 100-408 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 348.1 42.8 296 614-918 169-608 (611)
3 3iz6_a 40S ribosomal protein R 1.0 1 1 335.6 34.3 290 626-918 54-372 (380)
4 1nr0_A Actin interacting prote 1.0 1 1 334.3 43.2 350 556-918 62-564 (611)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 332.8 46.3 288 626-918 43-340 (340)
6 3ow8_A WD repeat-containing pr 1.0 1 1 328.0 42.9 285 629-918 23-318 (321)
7 2ymu_A WD-40 repeat protein; u 1.0 1 1 325.7 47.8 342 556-918 224-577 (577)
8 2pbi_B Guanine nucleotide-bind 1.0 1 1 325.4 45.7 289 626-918 52-354 (354)
9 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 320.9 41.2 239 678-918 838-1155(1249)
10 3dm0_A Maltose-binding peripla 1.0 1 1 319.2 43.5 285 627-918 371-690 (694)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=349.68 Aligned_cols=284 Identities=26% Similarity=0.497 Sum_probs=265.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 54463069998589999169999999968993999988998234674137987699999899998999848980999957
Q 002471 630 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 709 (918)
Q Consensus 630 ~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl 709 (918)
....+.+|.+.|+|++|+|++.+|++|+.|++|+|||+.+++...++.+|...|++++|++++.+|++|+.|++|+|||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 30766166776899999699998999938985999989999377888166786878998599999999918981999958
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECCCCEEEEEECCCE
Q ss_conf 99995458851578873699973899909999817992999975799045785268---118999129997999974991
Q 002471 710 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 786 (918)
Q Consensus 710 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~~~~ll~~~~dg~ 786 (918)
.+ ..++..+.+|...|.+++|+|++. ++++++.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 99-826699828999778999967999-9999968996999989999489999278862899999899999999918990
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEEE
Q ss_conf 999978996089995079989379999299--------------------9999999599-3999988989986237983
Q 002471 787 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 845 (918)
Q Consensus 787 I~i~D~~t~~~~~~l~~h~~~I~si~~spd--------------------g~~Las~s~d-~I~iwdl~s~~~~~~i~~~ 845 (918)
|++||+++..+...+.+|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEE
T ss_conf 99998989743667337874589999858655431012125555566788889999938984999988999---669999
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 048995399999279998999984991999989999189-9816679768999947999999996698399939
Q 002471 846 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 846 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
..|...|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 77888589999949989999995979299998999906899847778689999828999999992799489973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=348.12 Aligned_cols=296 Identities=22% Similarity=0.338 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCEEEE
Q ss_conf 8888543245685303544630699985899991699999999689939999889982346741-------379876999
Q 002471 614 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDV 686 (918)
Q Consensus 614 ~~~~~~~d~~~~~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-------~h~~~V~~i 686 (918)
|..++.|+.. +.+....+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+..+. +|...|.++
T Consensus 169 D~~v~lwd~~---~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v 245 (611)
T 1nr0_A 169 DNTVAIFEGP---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 245 (611)
T ss_dssp TSCEEEEETT---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred CCEEEEEECC---CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEE
T ss_conf 9809999799---9757665200257169999979999899998999199988999828665136643235667878999
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCE-------------------------------------------EEEECCCC
Q ss_conf 99899998999848980999957999954-------------------------------------------58851578
Q 002471 687 RFSPSMPRLATSSFDKTVRVWDADNPGYS-------------------------------------------LRTFMGHS 723 (918)
Q Consensus 687 ~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~-------------------------------------------~~~~~~h~ 723 (918)
+|+|++++|++++.|++|++||+.+ +.+ ...+.+|.
T Consensus 246 ~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~ 324 (611)
T 1nr0_A 246 TWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN 324 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS
T ss_pred EECCCCCEEEEEECCCEEEEEECCC-CCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCC
T ss_conf 9979999999990898099996888-701344047887664068999738879999589968999688997446983788
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-----------------------------------------
Q ss_conf 873699973899909999817992999975799045785-----------------------------------------
Q 002471 724 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----------------------------------------- 762 (918)
Q Consensus 724 ~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----------------------------------------- 762 (918)
..|++++|+|++. ++++++.|+.|++||+.++.+...+
T Consensus 325 ~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 325 KAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCEEEEEEECCCC-EEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCC
T ss_conf 8889999918999-899995898499997887925632166776507899987899699998489668954688543565
Q ss_pred --------------------------------------------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE-
Q ss_conf --------------------------------------------26811899912999799997499199997899608-
Q 002471 763 --------------------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC- 797 (918)
Q Consensus 763 --------------------------------------------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~- 797 (918)
...+.++.|+|++..+++++.|+.|++||+.....
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 21200148997079980799699999676399984894346406889549999289989999689973999994599222
Q ss_pred -EEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--ECCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf -99950799893799992999999999599-399998898998623798--30489953999992799989999849919
Q 002471 798 -RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSL 873 (918)
Q Consensus 798 -~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 873 (918)
... .+|...|++++|+|++++|++++.| +|++|++.+.. .++.. +..|...|.+++|+|++++|++++.|+.|
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC--CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf 4101-5778860799998999989999489989998857787--223210264046642589989989979999799729
Q ss_pred EEEECCCCC--E-EEECCC-CCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 999899991--8-998166-79768999947999999996698399939
Q 002471 874 ELWNMSENK--T-MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 874 ~iwd~~~~~--~-~~~~~h-~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
++|++..+. . ..+.+| ...|.+++|+|++. |++++.|+.|++|+
T Consensus 561 ~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 561 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEE
T ss_conf 9997887555632644467656711899858997-99952887789984
No 3
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=335.59 Aligned_cols=290 Identities=17% Similarity=0.366 Sum_probs=256.4
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53035446306999858999916999999996899399998899823467413798769999989999899984898099
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 705 (918)
..+.+..++++|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred CEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 21398200004534778999968999899991898099987888860148855998789999989999899954798589
Q ss_pred EEECCCCC------CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--------CCCEEEEE
Q ss_conf 99579999------54588515788736999738999099998179929999757990457852--------68118999
Q 002471 706 VWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRF 771 (918)
Q Consensus 706 Iwdl~~~~------~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--------~~~~~i~~ 771 (918)
+|++.... .....+.+|...|.++.|.|++...+++++.|++|++||++++.++..+. ..+.++.|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 99897775556773312640689754689999648997899977998199998677957899605667887567699992
Q ss_pred EC-CCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf 12-99979999749919999789-960899950799893799992999999999599-3999988989986237983048
Q 002471 772 QP-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 848 (918)
Q Consensus 772 sp-~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 848 (918)
.+ ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++.| +|++||++++ .++..+..+
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~ 290 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCC---CEEEEECCC
T ss_conf 06999989999789869999788897346998874887579999169996999838996999988899---688986156
Q ss_pred C-------CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE----CCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 9-------95399999279998999984991999989999189-98----166797689999479999999966983999
Q 002471 849 G-------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKL 916 (918)
Q Consensus 849 ~-------~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~----~~h~~~V~~la~spdg~~Lasgs~Dg~I~i 916 (918)
. ..+.+++|+|++.+|++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.||.|+|
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 55566556863899988999989999799979999887781578970236777784579998999998999608998899
Q ss_pred EC
Q ss_conf 39
Q 002471 917 WK 918 (918)
Q Consensus 917 Wd 918 (918)
|+
T Consensus 371 W~ 372 (380)
T 3iz6_a 371 WA 372 (380)
T ss_dssp EE
T ss_pred EE
T ss_conf 95
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=334.31 Aligned_cols=350 Identities=16% Similarity=0.225 Sum_probs=270.7
Q ss_pred CCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEE-ECCCCCCCC--------CCCCCCCCCC
Q ss_conf 661899738980211---6997267388820543000011268876754551-015899987--------8888543245
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR--------DAGGRGMDVS 623 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~~~~--------~~~~~~~d~~ 623 (918)
...+.|+|||.++++ ++.++|||+.+++..... ....+...|... +++++.... ...++.|+.
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~----~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT----TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE----EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE----EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC-
T ss_conf 599999999968999948997899489898415667----622557844899989999979999899773669999638-
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 6853035446306999858999916999-999996899399998899823467413798769999989999899984898
Q 002471 624 QGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 624 ~~~s~~~~~~l~~H~~~V~~i~fspdg~-~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 702 (918)
.+....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++++.++.+|...|++++|+|++++|++++.|+
T Consensus 137 ----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 137 ----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp ----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf ----9976325478898369998899982999992898099997999757665200257169999979999899998999
Q ss_pred EEEEEECCCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------------
Q ss_conf 099995799995458851-------5788736999738999099998179929999757990457852------------
Q 002471 703 TVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 763 (918)
Q Consensus 703 ~I~Iwdl~~~~~~~~~~~-------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------------ 763 (918)
+|++||+.+ +.++..+. +|...|.+++|+|++. +|++++.|++|++||+++++++..+.
T Consensus 213 ~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 213 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CEEEEECCC-CCEEEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 199988999-8286651366432356678789999979999-99999089809999688870134404788766406899
Q ss_pred ----------------------------------CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE-C------
Q ss_conf ----------------------------------68118999129997999974991999978996089995-0------
Q 002471 764 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-Q------ 802 (918)
Q Consensus 764 ----------------------------------~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l-~------ 802 (918)
..+.++.|+|++..+++++.|+.|++||+.++.+...+ .
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEE
T ss_conf 97388799995899689996889974469837888889999918999899995898499997887925632166776507
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q ss_conf ---------------------------------------------------------------------------79989
Q 002471 803 ---------------------------------------------------------------------------GHTKP 807 (918)
Q Consensus 803 ---------------------------------------------------------------------------~h~~~ 807 (918)
.|...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCC
T ss_conf 89998789969999848966895468854356521200148997079980799699999676399984894346406889
Q ss_pred EEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-CCEEE
Q ss_conf 3799992999999999599-399998898998623798304899539999927999899998499199998999-91899
Q 002471 808 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT 885 (918)
Q Consensus 808 I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~ 885 (918)
+.+++|+|++++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++.+|++++.|+.|++|++.+ +++..
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCC-EEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEE
T ss_conf 5499992899899996899739999945992-224101-57788607999989999899994899899988577872232
Q ss_pred ---ECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf ---816679768999947999999996698399939
Q 002471 886 ---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 886 ---~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
+..|...|++++|+|++++|++++.|+.|+||+
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 102640466425899899899799997997299997
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=332.80 Aligned_cols=288 Identities=21% Similarity=0.424 Sum_probs=262.0
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53035446306999858999916999999996899399998899823467413798769999989999899984898099
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 705 (918)
..++...++++|.+.|++++|++++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 01211001048778368999889999999981889689998999874337603886188999999999999980898199
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 99579999---545885157887369997389990999981799299997579904578526---811899912999799
Q 002471 706 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 706 Iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 779 (918)
+|++.+.. .....+.+|...|.++.|.+++. +++++.|+.|++||+++++++..+.+ .+.++.|+|++..++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCCCCEEEEEECCCCCCEEEEEECCCCC--EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 9979668886136778448776389999879996--99998999299998999918899769998668999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC--CCCCEEEEE
Q ss_conf 99749919999789960899950799893799992999999999599-399998898998623798304--899539999
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCV 856 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~ 856 (918)
+++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+.. +...+.+++
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC---CEEEEECCCCCCCCEEEEE
T ss_conf 9938993999778998167897487687799999499998999748981999988999---1899972688524169999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9279998999984991999989999189-9816679768999947999999996698399939
Q 002471 857 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 857 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|+|++.+|++++.|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 989999999977999099988413838658505778488999829999899972886189559
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=327.96 Aligned_cols=285 Identities=18% Similarity=0.367 Sum_probs=261.1
Q ss_pred EEEEEEECCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 354463069998589999169----9999999689939999889982--3467413798769999989999899984898
Q 002471 629 KEANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 702 (918)
Q Consensus 629 ~~~~~l~~H~~~V~~i~fspd----g~~Latgs~Dg~I~iwd~~~~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 702 (918)
.....+.+|.+.|++++|+++ +.+|++|+.|++|+||++...+ ....+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred HEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 04552156889679999824888888889998499989998898997436660056778889999889999899993798
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 09999579999545885157887369997389990999981799299997579904578526---811899912999799
Q 002471 703 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 779 (918)
Q Consensus 703 ~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 779 (918)
+|++||+.+ +..+..+..+...+.+++|+|++. ++++++.|+.|++|+++.++....+.. .+.++.|+|++..++
T Consensus 103 ~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 103 HIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp EEEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CEEEEECCC-CCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEE
T ss_conf 099997899-979899937985679999999999-899983899199998679946677438994299999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 99749919999789960899950799893799992999999999599-39999889899862379830489953999992
Q 002471 780 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 858 (918)
Q Consensus 780 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 858 (918)
+++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ .++..+..|...|.+++|+
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEEC
T ss_pred EECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC---CEEEEECCCCCCEEEEEEC
T ss_conf 9928983999999999099998025896018999489998999909980999878996---3258986888826899997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 79998999984991999989999189-9816679768999947999999996698399939
Q 002471 859 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 859 p~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|++++.+|++++.||.|+|||
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9999899981898099994999888889837877389999989999999975898089995
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=325.67 Aligned_cols=342 Identities=26% Similarity=0.456 Sum_probs=282.6
Q ss_pred CCCEEEECCCCEEEC---CCCCEEEECCCCCHHHHCCCCCCCCCCCCCEEEE-ECCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 661899738980211---6997267388820543000011268876754551-015899----98788885432456853
Q 002471 556 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS 627 (918)
Q Consensus 556 k~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~----~~~~~~~~~~d~~~~~s 627 (918)
...+.|++|+..+++ ++.+++||.....+ ..+ ......+... +.+++. ...+...+.|+. .
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~-~~~------~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~----~ 292 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTL------TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----N 292 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----T
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEE-EEE------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----C
T ss_conf 89999979999999991899899995999799-998------068898799999689999999959997999948----9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 03544630699985899991699999999689939999889982346741379876999998999989998489809999
Q 002471 628 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 707 (918)
Q Consensus 628 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iw 707 (918)
.+....+.+|...|++++|+|++.+|++++.|+.|++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 958999706889769999999999999996999599996999-7257874788977999998999999999699989999
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECC
Q ss_conf 57999954588515788736999738999099998179929999757990457852---681189991299979999749
Q 002471 708 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE 784 (918)
Q Consensus 708 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~~~d 784 (918)
+.. +..+..+.+|...|.+++|+|++.. +++++.|+.|++||.. ++.+..+. ..+.++.|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC--CCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 089--9789985278897489999899999-9999499989999699-97898962889975799998999999999399
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 919999789960899950799893799992999999999599-3999988989986237983048995399999279998
Q 002471 785 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 863 (918)
Q Consensus 785 g~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 863 (918)
+.|++||. +++.+..+.+|...|++++|+|++++|++++.| .|++||.. + .++..+..|...|.+++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-C---CEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98999979-998899972789977899996999999999198979999399-9---789998679999899999189999
Q ss_pred EEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 9999849919999899991899816679768999947999999996698399939
Q 002471 864 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 864 l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
|++++.|+.|++||.....+..+.+|.+.|++++|+||+++|++++.|+.|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999896999999699978989718888878999968999999990899999969
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=325.36 Aligned_cols=289 Identities=19% Similarity=0.355 Sum_probs=258.6
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53035446306999858999916999999996899399998899823467413798769999989999899984898099
Q 002471 626 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 705 (918)
Q Consensus 626 ~s~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 705 (918)
+..+...++++|.+.|+|++|++++.+|++|+.|++|+|||..+.+....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 22278799648898088999989999899992898299998999875357742788779999989999799713899889
Q ss_pred EEECCCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECC--C
Q ss_conf 99579999-----5458851578873699973899909999817992999975799045785268---118999129--9
Q 002471 706 VWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPH--L 775 (918)
Q Consensus 706 Iwdl~~~~-----~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~--~ 775 (918)
+|++.... .....+.+|...|.+++|++++.. +++++.|++|++||+++++++..+.++ +.++.+.+. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred EEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 9997425665533331163066784789999689999-999918995899767778199999278998699998757999
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC--CCCCE
Q ss_conf 979999749919999789960899950799893799992999999999599-399998898998623798304--89953
Q 002471 776 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKF 852 (918)
Q Consensus 776 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~--~~~~i 852 (918)
..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.. ..+..+.. +...+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGA 287 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCCCE
T ss_conf 99999947995999988899277983588788179999589998999969981999988899---678887478740345
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 99999279998999984991999989999189-9816679768999947999999996698399939
Q 002471 853 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 853 ~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
.++.|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 5999947999999997899299998988955779987899578999989999999982888889619
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=320.92 Aligned_cols=239 Identities=20% Similarity=0.368 Sum_probs=137.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC-
Q ss_conf 3798769999989999899984898099995799995458851578873699973899909999817992999975799-
Q 002471 678 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG- 756 (918)
Q Consensus 678 ~h~~~V~~i~fspdg~~Lasgs~Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~- 756 (918)
+|...|.+++|+|++.++++++.|+.|++|++.+ +..+..+.+|...|.+++|+|++.. +++++.|+.|++|++...
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEHHHHH
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCEEEECCCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCC
T ss_conf 8777607999827888899994798699998678-9565322787665689999899998-9999589728988746652
Q ss_pred ---------------------------------------EEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf ---------------------------------------04578526811899912999799997499199997899608
Q 002471 757 ---------------------------------------SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 797 (918)
Q Consensus 757 ---------------------------------------~~~~~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 797 (918)
.........+.+++|++++..+++++.+|.|.+||..++..
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCE
T ss_conf 01021133103689759986899813776248984476508972567278999958997799986999889997578723
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC-------------------------------------CC
Q ss_conf 99950799893799992999999999599-39999889899-------------------------------------86
Q 002471 798 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-------------------------------------EG 839 (918)
Q Consensus 798 ~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~-------------------------------------~~ 839 (918)
...+.+|...|.+++|+|++++|++++.| .|++||+.++. ..
T Consensus 996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCC
T ss_conf 44303677716899998999989998699879999879996689852787389999908995899978896899888988
Q ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEC
Q ss_conf 237983048995399999279998999984991999989999189-9816679768999947999999996698399939
Q 002471 840 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 918 (918)
Q Consensus 840 ~~i~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~la~spdg~~Lasgs~Dg~I~iWd 918 (918)
.++..+..|...+.+++|+|++.++++++.|+.|++||+.++... .+.+|.+.|++++|+|++.+|++++.||.|++||
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 65588746688489999989999899984999489987898500125506877679999979999899982899799998
No 10
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=319.16 Aligned_cols=285 Identities=23% Similarity=0.411 Sum_probs=243.9
Q ss_pred CCEEEEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 303544630699985899991699-99999968993999988998-----234674137987699999899998999848
Q 002471 627 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 700 (918)
Q Consensus 627 s~~~~~~l~~H~~~V~~i~fspdg-~~Latgs~Dg~I~iwd~~~~-----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~ 700 (918)
.++....+++|.+.|+||+|++++ ++|++|+.|++|++|++.+. .....+.+|...|++++|++++++|++|+.
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 46412110467740699986699888899980899489997568875555333242588884799999799999999808
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE------ECCCEEEEEECC
Q ss_conf 98099995799995458851578873699973899909999817992999975799045785------268118999129
Q 002471 701 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPH 774 (918)
Q Consensus 701 Dg~I~Iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~------~~~~~~i~~sp~ 774 (918)
|++|+|||+.+ +.++..+.+|...|.+++|+|++.. +++++.|++|++||+......... ...+.++.|+++
T Consensus 451 Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCCEEEEECCC-CCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 99289997999-9513688679998899999089998-999948897999978998540430377888786799999179
Q ss_pred C--CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf 9--979999749919999789960899950799893799992999999999599-3999988989986237983048995
Q 002471 775 L--GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 851 (918)
Q Consensus 775 ~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~I~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 851 (918)
+ ..+++++.|+.|++||+++.++...+.+|...|++++|+|++.+|++++.| .|++||++++ .++..+.. ...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~ 604 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSV 604 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECC-CCC
T ss_conf 88655999968985999989999278998678888889999189898999958994999988999---56788338-994
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-------------------CCCEEEEEEECCCCEEEEEECC
Q ss_conf 399999279998999984991999989999189-98166-------------------7976899994799999999669
Q 002471 852 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHD 911 (918)
Q Consensus 852 i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~la~spdg~~Lasgs~D 911 (918)
+.+++|+|++.++++ +.++.|++||+.++..+ .+..+ ...+++++|+|++++|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEE-ECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCC
T ss_conf 789998599868999-7699789998999987332002456532002456645677404775148986899989997589
Q ss_pred CCEEEEC
Q ss_conf 8399939
Q 002471 912 KFVKLWK 918 (918)
Q Consensus 912 g~I~iWd 918 (918)
|.|+||+
T Consensus 684 g~i~iW~ 690 (694)
T 3dm0_A 684 GVIRVWG 690 (694)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
T ss_conf 8499985
Done!