BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002472
(918 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 178 AVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV 237
A+ L L + + ++ + L +LYL+ N L+ LP E+ + NL+VL + +N L +P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 238 ELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGN 276
EL C L N + +F + L+ L + GN
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 176 VTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCV 235
+T + L G L+ LP ++ L L L L +N+L++LP ELG+ LK +NM+ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 236 PVELRECVGLVELSLEHNRLVRPLL 260
P E L L +E N L + L
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLEKQFL 333
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 186 LSALPVD-LTRLPVLEKLYLDNNKLSTLPPEL-GAMKNLKVLIVDNNMLVCVPVEL-REC 242
LS+LP RL L LYL++NKL TLP + +KNL+ L V +N L +P+ + +
Sbjct: 49 LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108
Query: 243 VGLVELSLEHNRLVR-PLLDFRAMAELKILRL 273
V L EL L+ N+L P F ++ +L L L
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 168 GFCDHWKTVTAVSLCGLGLSALPVDLTRLPV-LEKLYLDNNKLSTLPPE-LGAMKNLKVL 225
G C +V L+A+P + +P +KL L +NKLS+LP + + L++L
Sbjct: 10 GVCSCNNNKNSVDCSSKKLTAIP---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66
Query: 226 IVDNNMLVCVPVEL-RECVGLVELSLEHNRL-VRPLLDFRAMAELKILRL 273
+++N L +P + +E L L + N+L P+ F + L LRL
Sbjct: 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 302 VTGTDEQTQKVI 313
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 258 VTGTDEQTQKVI 269
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 252 VTGTDEQTQKVI 263
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 302 VTGTDEQTQKVI 313
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 288 VTGTDEQTQKVI 299
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 302 VTGTDEQTQKVI 313
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 252 VTGTDEQTQKVI 263
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 251 VTGTDEQTQKVI 262
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD SV L+
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 406 MKCDIMQPIIAVL-----KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+L S A ++++ + L + + +L +L L
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV A+ L R +V + L++L E + A RA+
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 519 ILGENESLRRAI 530
+ G +E + I
Sbjct: 253 VTGTDEQTQVVI 264
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 252 VTGTDEQTQKVI 263
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 247 VTGTDEQTQKVI 258
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 251 VTGTDEQTQKVI 262
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 286 VTGTDEQTQKVI 297
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 247 VTGTDEQTQKVI 258
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AGD S L+
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 278 VTGTDEQTQKVI 289
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 165 MGSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLSTLPPEL-GAMKNL 222
+ +G D + + L L++LP+ + L L+KLYL N+L +LP + + L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 223 KVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVR-PLLDFRAMAELKILRLFGN 276
K L ++ N L +P + L LSL N+L P F + +L+ + LFGN
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 165 MGSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLSTLPPEL-GAMKNL 222
+ +G D + + L L++LP+ + L L+KLYL N+L +LP + + L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 223 KVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVR-PLLDFRAMAELKILRLFGN 276
K L ++ N L +P + L LSL N+L P F + +L+ + LFGN
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 177 TAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVP 236
T V GL LP + R + +LYLD N+ + +P EL K+L ++ + NN + +
Sbjct: 13 TVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 237 VE-LRECVGLVELSLEHNRL-VRPLLDFRAMAELKILRLFGN 276
+ L+ L L +NRL P F + L++L L GN
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 174 KTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNML 232
+ VT + L G + +P +L+ L + L NN++STL + M L LI+ N L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 233 VCVP 236
C+P
Sbjct: 91 RCIP 94
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 65 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 124
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 125 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 185 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 244
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 245 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 123
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 124 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 184 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 243
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 244 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 65 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 124
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 125 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 184
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 185 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 244
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 245 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 123
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 124 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 183
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 184 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 243
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 244 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 66 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 125
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 126 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 186 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 245
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 246 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 300
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 66 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 125
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 126 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 185
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 186 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 245
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 246 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 300
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 8/192 (4%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LL 405
A AL I + D A+ IS+++S + H+ EQA AL ++AG S L+
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 406 MKCDIMQPIIAV-----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460
+K + P++A+ L + A ++++ + L + + +L +L L
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALA-- 518
H +PEV + A+ L R +V + + L++L E + A RA+
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 519 ILGENESLRRAI 530
+ G +E ++ I
Sbjct: 321 VTGTDEQTQKVI 332
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 347 ASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLL 405
A AL I + V D +AV I ++ + + V EQA AL ++AGD +
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 406 MKCDIMQPIIAVLKSFAPEEVKS-----------------------VLQVVGQLAFASDT 442
++C+ M+PI+ + S P +++ L + +L ++ DT
Sbjct: 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 271
Query: 443 -------------------VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483
Q ++ + K L L +H++ VQ AL AVGN+ +
Sbjct: 272 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331
Query: 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLRRAIRGRQVP 536
+ +V + + L L P+ + K A ++ + G E ++ I +P
Sbjct: 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 386
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 30/120 (25%)
Query: 165 MGSGFCDHW---KTVTAVSLCGLGLSALPV---DLTRLPVLE----KLYLDNNKLSTLPP 214
+ S C W +T++ + GL L V L LP L KL+ NN+L++LP
Sbjct: 159 LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP- 217
Query: 215 ELGAMKNLKVLIVDNNMLVCVPV---ELRECV--------------GLVELSLEHNRLVR 257
LK LIV N L +PV EL+E + GL+ LS+ N+L R
Sbjct: 218 --ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR 275
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 368 NAVRQLISMISSDNRHVVEQACSALSSLA-GDVSVAMLLMKCDIMQPIIAVLKSFAPEEV 426
N V +L+ +++S + ++A L+ +A G S ++ ++ ++ +L S E
Sbjct: 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 427 KSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRR 486
K + + +A D + ++ ++ L L + EVQ+ A A+ N+A +
Sbjct: 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 487 ILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL--GENESLR 527
+ ++L++L + V K AARALA + G +E+++
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 46/165 (27%)
Query: 358 ENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LLMKCDIMQPIIA 416
+ R+V+ AV I ++SS+ V EQA AL ++AGD ++ ++ C+I+ P++
Sbjct: 96 QTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 153
Query: 417 VL----------------------KSFAPE--EVKSVLQVVGQLAFASDTVA-------- 444
+ KS PE +V L V+ L F SDT
Sbjct: 154 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 213
Query: 445 -----------QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478
Q ++ V + L L H + +V AL AVGN+
Sbjct: 214 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 258
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 46/165 (27%)
Query: 358 ENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAM-LLMKCDIMQPIIA 416
+ R+V+ AV I ++SS+ V EQA AL ++AGD ++ ++ C+I+ P++
Sbjct: 99 QTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 156
Query: 417 VL----------------------KSFAPE--EVKSVLQVVGQLAFASDTVA-------- 444
+ KS PE +V L V+ L F SDT
Sbjct: 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 216
Query: 445 -----------QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478
Q ++ V + L L H + +V AL AVGN+
Sbjct: 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV 237
L+ LP L +L+LDNNKLS +P L +K L+V+ + N + V V
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 189 LPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVC-VPVELRECVGLV 246
+P L+ L + L NN+L+ +P +G ++NL +L + NN +P EL +C L+
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 247 ELSLEHN 253
L L N
Sbjct: 539 WLDLNTN 545
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 188 ALPVDLTRLPVLEKLYLDNNKL-STLPPELGAMKNLKVLIVDNNMLVC-VPVELRECVGL 245
+P L L L L L N L +P EL +K L+ LI+D N L +P L C L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 246 VELSLEHNRLVRPLLDFRAMAE-LKILRLFGN 276
+SL +NRL + + E L IL+L N
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 189 LPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVC-VPVELRECVGLV 246
+P L+ L + L NN+L+ +P +G ++NL +L + NN +P EL +C L+
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 247 ELSLEHN 253
L L N
Sbjct: 542 WLDLNTN 548
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 188 ALPVDLTRLPVLEKLYLDNNKL-STLPPELGAMKNLKVLIVDNNMLVC-VPVELRECVGL 245
+P L L L L L N L +P EL +K L+ LI+D N L +P L C L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 246 VELSLEHNRLVRPLLDFRAMAE-LKILRLFGN 276
+SL +NRL + + E L IL+L N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 128 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 185
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 186 NHIS----DLRALAGLKNLDVLELF 206
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN 230
LP + KL+L+ NKL+ + P L +KNL L +D N
Sbjct: 65 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 98
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 188 NHIS----DLRALAGLKNLDVLELF 208
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN 230
LP + KL+L+ NKL+ + P L +KNL L +D N
Sbjct: 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 128 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLSK 185
Query: 253 NRLVRPLLDFRAMAELKILRLF 274
N + L R + L +L LF
Sbjct: 186 NH-ISDLRALRGLKNLDVLELF 206
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN 230
LP + KL+L+ NKL+ + P L +KNL L +D N
Sbjct: 65 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 98
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 127 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 184
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 185 NHIS----DLRALAGLKNLDVLELF 205
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
LP + KL+L+ NKL+ + P L +KNL L +D N +
Sbjct: 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 125 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 182
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 183 NHIS----DLRALAGLKNLDVLELF 203
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
LP + KL+L+ NKL+ + P L +KNL L +D N +
Sbjct: 62 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 97
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 205
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 206 NHIS----DLRALAGLKNLDVLELF 226
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
LP + KL+L+ NKL+ + P L +KNL L +D N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 120
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 205
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 206 NHIS----DLRALAGLKNLDVLELF 226
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
LP + KL+L+ NKL+ + P L +KNL L +D N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 120
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 148 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 205
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 206 NHIS----DLRALAGLKNLDVLELF 226
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
LP + KL+L+ NKL+ + P L +KNL L +D N +
Sbjct: 85 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 120
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+A LK +L LF
Sbjct: 188 NHIS----DLRALAGLKNLDVLELF 208
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN 230
LP + KL+L+ NKL+ + P L +KNL L +D N
Sbjct: 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 144 GIGVLTRLMRSD---LSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTR-LPVL 199
G+ +L +L SD L + P G G + + L GL L L R L L
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLG------RLHTLHLDRCGLQELGPGLFRGLAAL 130
Query: 200 EKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRL-- 255
+ LYL +N L LP + + NL L + N + VP R L L L NR+
Sbjct: 131 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 190
Query: 256 VRPLLDFRAMAELKILRLFGN 276
V P FR + L L LF N
Sbjct: 191 VHP-HAFRDLGRLMTLYLFAN 210
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 144 GIGVLTRLMRSD---LSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTR-LPVL 199
G+ +L +L SD L + P G G + + L GL L L R L L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLG------RLHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 200 EKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRL-- 255
+ LYL +N L LP + + NL L + N + VP R L L L NR+
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 256 VRPLLDFRAMAELKILRLFGN 276
V P FR + L L LF N
Sbjct: 192 VHP-HAFRDLGRLMTLYLFAN 211
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 559 LKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618
L+E + R+ + FD++ GTSTGG+L ++ T ++ + ++V PF
Sbjct: 42 LQEXDNNADARLADYFDVIGGTSTGGLLTAXIS----TPNENNRPFAAAKEIV---PF-- 92
Query: 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADED-----GDLLIES 673
+ E QI+ S Q + G K+ ++L+E + +++I S
Sbjct: 93 ------YFEHGPQIFNPSGQ-----ILGPKYDGKYLXQVLQEKLGETRVHQALTEVVISS 141
Query: 674 -SVK-NIPKVFTVSTLVN 689
+K N P +FT S L N
Sbjct: 142 FDIKTNKPVIFTKSNLAN 159
>pdb|3INL|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
pdb|3INL|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Agonist Alda-1
Length = 500
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 186 LSALPVDL-TRLPVLEKLYLDNNKLSTLPPEL-GAMKNLKVLIVDNNMLVCVPVEL-REC 242
L +LP + L L +LYL NKL +LP + + +L L + N L +P + +
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 243 VGLVELSLEHNRLVRPLLD--FRAMAELKILRLFGN 276
L EL+L N+L + L D F + +LK LRL+ N
Sbjct: 100 TQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQN 134
>pdb|1ZUM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|I Chain I, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|J Chain J, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|K Chain K, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|1ZUM|L Chain L, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Apo Form
pdb|2ONM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|I Chain I, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|J Chain J, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|K Chain K, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
pdb|2ONM|L Chain L, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant,
Aldh22, Complexed With Nad+
Length = 500
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|1CW3|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mn2+
pdb|2VLE|A Chain A, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|B Chain B, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|C Chain C, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|D Chain D, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|E Chain E, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|F Chain F, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|G Chain G, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
pdb|2VLE|H Chain H, The Structure Of Daidzin, A Naturally Occurring Anti
Alcohol-Addiction Agent, In Complex With Human
Mitochondrial Aldehyde Dehydrogenase
Length = 494
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 353 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 403
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 404 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 433
>pdb|3N81|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N81|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|3N82|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N82|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nadh Complex
pdb|3N83|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|B Chain B, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|C Chain C, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|D Chain D, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|E Chain E, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|F Chain F, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|G Chain G, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
pdb|3N83|H Chain H, T244a Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Nad Complex
Length = 500
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|3N80|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
pdb|3N80|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form
Length = 500
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|1O05|A Chain A, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|B Chain B, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|C Chain C, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|D Chain D, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|E Chain E, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|F Chain F, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|G Chain G, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1O05|H Chain H, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase
pdb|1NZX|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZX|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ In The Presence Of Low Mg2+
pdb|1NZZ|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1NZZ|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Low Mg2+
pdb|1O00|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O00|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nad+ And Mg2+ Showing Dual Nad(H) Conformations
pdb|1O01|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O01|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Crotonaldehyde, Nad(H) And Mg2+
pdb|1O02|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|1O02|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Nadh In The Presence Of Mg2+
pdb|3INJ|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|B Chain B, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|C Chain C, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|D Chain D, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|E Chain E, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|F Chain F, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|G Chain G, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3INJ|H Chain H, Human Mitochondrial Aldehyde Dehydrogenase Complexed With
Agonist Alda-1
pdb|3SZ9|A Chain A, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|B Chain B, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|C Chain C, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|D Chain D, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|E Chain E, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|F Chain F, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|G Chain G, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|3SZ9|H Chain H, Crystal Structure Of Human Aldh2 Modified With The
Beta-Elimination Product Of Aldi-3;
1-(4-Ethylbenzene)prop-2-En-1-One
pdb|4FQF|A Chain A, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|B Chain B, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|C Chain C, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
pdb|4FQF|D Chain D, Crystal Structure Of A Thionitrate Intermediate Of Human
Aldehyde Dehydrogenase-2
Length = 500
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|1NZW|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|B Chain B, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|C Chain C, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|D Chain D, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|E Chain E, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|F Chain F, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|G Chain G, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1NZW|H Chain H, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nadh And Mg2+
pdb|1O04|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|B Chain B, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|C Chain C, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|D Chain D, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|E Chain E, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|F Chain F, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|G Chain G, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
pdb|1O04|H Chain H, Cys302ser Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase Complexed With Nad+ And Mg2+
Length = 500
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|2ONN|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|B Chain B, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|C Chain C, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|D Chain D, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|E Chain E, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|F Chain F, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|G Chain G, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONN|H Chain H, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Apo Form
pdb|2ONO|A Chain A, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|B Chain B, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|C Chain C, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|D Chain D, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|E Chain E, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|F Chain F, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|G Chain G, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONO|H Chain H, Arg475gln Mutant Of Mitochondrial Aldehyde Dehydrogenase,
Apo Form, Pseudo-Merohedrally Twinned
pdb|2ONP|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|B Chain B, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|C Chain C, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|D Chain D, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|E Chain E, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|F Chain F, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|G Chain G, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
pdb|2ONP|H Chain H, Arg475gln Mutant Of Human Mitochondrial Aldehyde
Dehydrogenase, Complexed With Nad+
Length = 500
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 150 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 207
Query: 253 NRLVRPLLDFRAMAELK---ILRLFG 275
N + D RA+A LK +L LF
Sbjct: 208 NHIS----DLRALAGLKNLDVLELFS 229
>pdb|4FR8|A Chain A, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|B Chain B, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|C Chain C, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|D Chain D, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|E Chain E, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|F Chain F, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|G Chain G, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
pdb|4FR8|H Chain H, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In
Complex With Nitroglycerin
Length = 500
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA 422
GK E A I++D + ++ ++ GDV M + K +I P++ +LK
Sbjct: 359 TGKQEGAKLLCGGGIAADRGYFIQ------PTVFGDVQDGMTIAKEEIFGPVMQILK--- 409
Query: 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455
K++ +VVG+ ++ +A + TKD+ K+
Sbjct: 410 ---FKTIEEVVGRANNSTYGLAAAVFTKDLDKA 439
>pdb|2B78|A Chain A, A Putative Sam-Dependent Methyltransferase From
Streptococcus Mutans
pdb|3LDF|A Chain A, Crystal Structure Of Smu.776, A Putative Methyltransferase
Complexed With Sah
Length = 385
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 533 RQVPKQGLRILSMDG-----GGMKGLATVQILKEIEKGTGKRIHELFDL 576
++ +QGL ILS +G + Q K+IEKG GK+ H DL
Sbjct: 311 HKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 359
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEH 252
L LP LE LYL NNK++ + L + L L +++N + + V L L L L
Sbjct: 125 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLACLTKLQNLYLSK 182
Query: 253 NRLVRPLLDFRAMAELK---ILRLF 274
N + D RA+ LK +L LF
Sbjct: 183 NHIS----DLRALCGLKNLDVLELF 203
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN 230
LP + KL+L+ NKL+ + P L +KNL L +D N
Sbjct: 62 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 95
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 168 GFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLSTLPPEL-GAMKNLKVL 225
G D +T +SL + +LP + +L L LYL NKL +LP + + LK L
Sbjct: 46 GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Query: 226 IVDNNMLVCVP 236
+D N L VP
Sbjct: 106 ALDTNQLKSVP 116
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 185 GLSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVE-LRE 241
GL L L R L L+ LYL +N L LP + NL L + N + VP R
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 242 CVGLVELSLEHNRLVRPLLD-FRAMAELKILRLFGN 276
L L L N + R FR + L L LF N
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 185 GLSALPVD---LTRLP----VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV 237
L L VD LT LP +LE + DNN+L+ L PEL +L+VL V NN L +P
Sbjct: 121 SLKHLDVDNNQLTXLPELPALLEYINADNNQLTXL-PELPT--SLEVLSVRNNQLTFLP- 176
Query: 238 ELRECVGLVELS 249
EL E + +++S
Sbjct: 177 ELPESLEALDVS 188
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 176 VTAVSLCGLGLSALPVDLTRLPV-LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVC 234
+T + + L +LP LP LE L +N+LSTL PEL A +LK L VDNN L
Sbjct: 82 ITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PELPA--SLKHLDVDNNQLTX 134
Query: 235 VP 236
+P
Sbjct: 135 LP 136
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 192 DLTRLPVLEKLYL------DNNKLSTLPPELGAMKNLKVLIVDNNML 232
DLT L LE+L L +N+L LPP L A++ L+VL +N L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 192 DLTRLPVLEKLYL------DNNKLSTLPPELGAMKNLKVLIVDNNML 232
DLT L LE+L L +N+L LPP L A++ L+VL +N L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 20/94 (21%)
Query: 162 GNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLP-------- 213
NN D ++ ++ L LP +L LP L +Y DNN L LP
Sbjct: 161 DNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLES 219
Query: 214 -----------PELGAMKNLKVLIVDNNMLVCVP 236
PEL + L + DNN+L +P
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 185 GLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVP 236
LS LP P+LE L + NN+L LP EL LK++ VDNN L +P
Sbjct: 125 ALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP 169
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 369 AVRQLISMISSDNRHVVEQACSALSSLA-GDVSVAMLLMKCDIMQPIIAVLKSFAPEEVK 427
A+ L +I S++ V+ AC ALS L+ G +++ + ++ +L +P +
Sbjct: 207 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 266
Query: 428 SVLQVVGQLAFASDTVAQKMLTKDVLKS-LKLLCAHKNPEVQRFALLAVGNLAFCLENRR 486
L+ VG + D Q ++ L L LL + +++ A + N+ +++
Sbjct: 267 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 326
Query: 487 ILVTSESLRDLLMRLTVGPEPRVNKAAARALA 518
V + + L+ L E + K AA A++
Sbjct: 327 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 358
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 164 NMGSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLSTLPPEL-GAMKN 221
++ G D +T + L L +LP + +L L +L LDNN+L +LP + +
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 222 LKVLIVDNNMLVCVP 236
LK L +++N L VP
Sbjct: 183 LKQLSLNDNQLKSVP 197
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 195 RLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNR 254
++ LE+LY+ NN+L L + LKVL + +N L+ V + L L L+HN
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335
Query: 255 LV 256
+V
Sbjct: 336 IV 337
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 186 LSALPVDLTR-LPVLEKLYLDNNKLSTLPPE-LGAMKNLKVLIVDNNMLVCVPVEL 239
L++LP+ R L L++LYL N+L TLPP L L+ L + NN L +P L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCV 235
L P L +L+L+NNKL +P L K ++V+ + NN + +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 193 LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCV 235
L P L +L+L+NNKL +P L K ++V+ + NN + +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 369 AVRQLISMISSDNRHVVEQACSALSSLA-GDVSVAMLLMKCDIMQPIIAVLKSFAPEEVK 427
A+ L +I S++ V+ AC ALS L+ G +++ + ++ +L +P +
Sbjct: 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304
Query: 428 SVLQVVGQLAFASDTVAQKMLTKDVLKS-LKLLCAHKNPEVQRFALLAVGNLAFCLENRR 486
L+ VG + D Q ++ L L LL + +++ A + N+ +++
Sbjct: 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQI 364
Query: 487 ILVTSESLRDLLMRLTVGPEPRVNKAAARALA 518
V + + L+ L E + K AA A++
Sbjct: 365 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 621 EAATW-REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLI 671
EA W R+ L ++S + +R V+ G+ + D+F +L +++ E G +L+
Sbjct: 84 EAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILV 135
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNEL 136
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRP 258
LE+LY+ NN+L L + LKVL + +N L+ V + L L L+HN +V
Sbjct: 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT- 332
Query: 259 LLDFRAMAELKILRLFGN 276
L LK L L N
Sbjct: 333 -LKLSTHHTLKNLTLSHN 349
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 621 EAATW-REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLI 671
EA W R+ L ++S + +R V+ G+ + D+F +L +++ E G +L+
Sbjct: 84 EAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAILV 135
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232
+ +T ++L L+ L VD T LPVL L L +N+L +LP + L VL V N L
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 113
Query: 233 VCVPV-ELRECVGLVELSLEHNRL 255
+P+ LR L EL L+ N L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNEL 137
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 607 LGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADED 666
+G V A P A RE + ++Y S +++G + D L+K CAD D
Sbjct: 193 IGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIK--CADID 250
Query: 667 GDLLIESSVK 676
G L+ +S+K
Sbjct: 251 GFLVGGASLK 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,670,937
Number of Sequences: 62578
Number of extensions: 949224
Number of successful extensions: 2577
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2437
Number of HSP's gapped (non-prelim): 164
length of query: 918
length of database: 14,973,337
effective HSP length: 108
effective length of query: 810
effective length of database: 8,214,913
effective search space: 6654079530
effective search space used: 6654079530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)