Query 002472
Match_columns 918
No_of_seqs 1091 out of 6185
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 00:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4231 Intracellular membrane 100.0 1.5E-77 3.3E-82 623.9 24.5 690 67-862 1-692 (763)
2 cd07211 Pat_PNPLA8 Patatin-lik 100.0 9E-50 2E-54 433.1 25.4 277 534-863 2-283 (308)
3 cd07216 Pat17_PNPLA8_PNPLA9_li 100.0 3.9E-47 8.5E-52 411.8 21.2 272 540-863 1-287 (309)
4 cd07212 Pat_PNPLA9 Patatin-lik 100.0 4.2E-45 9.1E-50 392.0 19.9 273 542-877 1-309 (312)
5 cd07215 Pat17_PNPLA8_PNPLA9_li 100.0 6.7E-45 1.5E-49 397.0 20.9 262 541-863 1-292 (329)
6 cd07214 Pat17_isozyme_like Pat 100.0 1.7E-44 3.8E-49 394.0 23.2 287 538-899 2-332 (349)
7 cd07213 Pat17_PNPLA8_PNPLA9_li 100.0 1.1E-40 2.4E-45 357.3 22.6 245 539-861 1-263 (288)
8 cd07199 Pat17_PNPLA8_PNPLA9_li 100.0 3.7E-39 7.9E-44 341.4 18.6 221 542-863 1-234 (258)
9 cd07217 Pat17_PNPLA8_PNPLA9_li 100.0 9.2E-39 2E-43 345.6 20.9 236 540-829 1-258 (344)
10 COG3621 Patatin [General funct 100.0 1.3E-30 2.9E-35 261.2 13.8 198 538-789 7-215 (394)
11 cd07207 Pat_ExoU_VipD_like Exo 100.0 1.3E-27 2.8E-32 242.7 16.0 179 543-784 2-186 (194)
12 cd07205 Pat_PNPLA6_PNPLA7_NTE1 99.9 2.1E-27 4.5E-32 236.5 16.2 163 542-787 2-164 (175)
13 cd07210 Pat_hypo_W_succinogene 99.9 1.2E-26 2.7E-31 237.3 17.4 178 542-809 2-179 (221)
14 cd07225 Pat_PNPLA6_PNPLA7 Pata 99.9 3.8E-26 8.3E-31 244.1 18.4 186 540-810 15-202 (306)
15 cd07228 Pat_NTE_like_bacteria 99.9 6.7E-26 1.5E-30 225.0 16.1 162 542-787 2-164 (175)
16 cd07209 Pat_hypo_Ecoli_Z1214_l 99.9 4.5E-25 9.7E-30 226.0 16.0 170 543-811 1-172 (215)
17 cd07230 Pat_TGL4-5_like Triacy 99.9 2.1E-24 4.5E-29 239.6 18.9 217 507-787 34-274 (421)
18 cd07227 Pat_Fungal_NTE1 Fungal 99.9 4.3E-24 9.4E-29 222.6 16.6 185 540-809 10-194 (269)
19 cd07232 Pat_PLPL Patain-like p 99.9 1.4E-23 3.1E-28 231.9 17.9 215 507-788 30-264 (407)
20 PRK10279 hypothetical protein; 99.9 7.1E-23 1.5E-27 217.4 15.8 165 540-787 5-169 (300)
21 cd07208 Pat_hypo_Ecoli_yjju_li 99.9 9.7E-23 2.1E-27 217.2 16.3 169 543-788 1-171 (266)
22 cd07198 Patatin Patatin-like p 99.9 1.1E-22 2.4E-27 201.4 12.8 158 543-784 1-163 (172)
23 KOG0444 Cytoskeletal regulator 99.9 1.1E-23 2.5E-28 227.3 -1.7 259 119-385 97-376 (1255)
24 COG1752 RssA Predicted esteras 99.9 3.6E-21 7.9E-26 208.6 16.7 180 538-788 9-188 (306)
25 cd07206 Pat_TGL3-4-5_SDP1 Tria 99.8 4E-21 8.8E-26 199.9 13.0 170 507-788 30-219 (298)
26 cd07221 Pat_PNPLA3 Patatin-lik 99.8 7.5E-21 1.6E-25 197.3 14.4 165 543-783 3-169 (252)
27 cd07229 Pat_TGL3_like Triacylg 99.8 2.9E-20 6.3E-25 200.9 19.2 217 507-783 39-295 (391)
28 cd07222 Pat_PNPLA4 Patatin-lik 99.8 7.4E-21 1.6E-25 198.2 13.9 167 543-784 2-170 (246)
29 KOG4194 Membrane glycoprotein 99.8 4.3E-22 9.3E-27 214.5 4.3 307 125-465 78-403 (873)
30 COG5064 SRP1 Karyopherin (impo 99.8 2.2E-21 4.7E-26 195.6 8.2 176 345-520 134-354 (526)
31 KOG4194 Membrane glycoprotein 99.8 6.3E-22 1.4E-26 213.2 4.2 252 116-382 140-403 (873)
32 cd07218 Pat_iPLA2 Calcium-inde 99.8 1.6E-20 3.5E-25 194.2 14.5 161 543-782 3-166 (245)
33 PF01734 Patatin: Patatin-like 99.8 9.7E-22 2.1E-26 201.0 5.3 200 543-786 1-204 (204)
34 PLN00113 leucine-rich repeat r 99.8 9.6E-21 2.1E-25 240.1 15.3 252 124-382 139-415 (968)
35 PLN00113 leucine-rich repeat r 99.8 8.2E-21 1.8E-25 240.7 14.6 257 119-382 158-439 (968)
36 cd07231 Pat_SDP1-like Sugar-De 99.8 3.1E-20 6.7E-25 192.7 15.6 174 507-784 29-227 (323)
37 KOG0444 Cytoskeletal regulator 99.8 3.2E-22 7E-27 216.2 -0.2 175 125-301 7-186 (1255)
38 cd07219 Pat_PNPLA1 Patatin-lik 99.8 3.7E-20 8E-25 197.0 14.3 169 539-784 11-182 (382)
39 cd07204 Pat_PNPLA_like Patatin 99.8 3.9E-20 8.4E-25 192.4 13.5 165 543-784 2-169 (243)
40 cd07220 Pat_PNPLA2 Patatin-lik 99.8 1.5E-19 3.2E-24 186.8 13.1 166 542-784 6-174 (249)
41 cd07224 Pat_like Patatin-like 99.8 5.3E-19 1.1E-23 182.9 14.2 158 543-783 2-164 (233)
42 KOG0472 Leucine-rich repeat pr 99.8 4E-22 8.6E-27 206.1 -9.8 246 119-382 62-308 (565)
43 KOG0166 Karyopherin (importin) 99.8 1.2E-19 2.6E-24 198.9 7.7 177 345-521 129-350 (514)
44 KOG0472 Leucine-rich repeat pr 99.8 2.5E-21 5.5E-26 200.3 -8.0 245 119-382 39-286 (565)
45 COG4667 Predicted esterase of 99.7 6.8E-18 1.5E-22 166.7 11.6 173 537-788 8-183 (292)
46 PRK15387 E3 ubiquitin-protein 99.7 5.2E-17 1.1E-21 191.5 16.4 216 126-382 223-456 (788)
47 cd07223 Pat_PNPLA5-mammals Pat 99.7 5.4E-17 1.2E-21 171.5 14.5 169 538-783 7-178 (405)
48 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.3E-24 166.3 -4.9 161 119-282 27-189 (264)
49 KOG0617 Ras suppressor protein 99.7 2.2E-19 4.9E-24 165.2 -5.5 164 145-310 29-196 (264)
50 cd01819 Patatin_and_cPLA2 Pata 99.7 1.2E-16 2.6E-21 154.6 10.7 142 543-803 1-154 (155)
51 COG5064 SRP1 Karyopherin (impo 99.7 3.2E-18 6.9E-23 172.9 -0.4 178 346-523 221-399 (526)
52 KOG2214 Predicted esterase of 99.7 2.7E-16 5.9E-21 168.5 14.1 211 508-784 139-371 (543)
53 KOG2968 Predicted esterase of 99.7 2.1E-16 4.5E-21 177.5 13.3 185 539-810 838-1024(1158)
54 KOG0166 Karyopherin (importin) 99.7 2.5E-17 5.3E-22 180.9 4.8 178 345-522 214-393 (514)
55 TIGR03607 patatin-related prot 99.7 1.6E-15 3.6E-20 176.2 19.6 220 542-793 5-298 (739)
56 PRK15370 E3 ubiquitin-protein 99.7 3.1E-16 6.7E-21 186.3 12.0 224 125-383 199-427 (754)
57 PRK15387 E3 ubiquitin-protein 99.6 2.1E-15 4.5E-20 178.0 14.4 177 126-332 202-378 (788)
58 PRK15370 E3 ubiquitin-protein 99.6 1.9E-15 4.2E-20 179.6 10.2 221 125-382 178-399 (754)
59 KOG0618 Serine/threonine phosp 99.6 5.6E-17 1.2E-21 184.8 -4.5 249 124-382 218-487 (1081)
60 KOG0618 Serine/threonine phosp 99.6 2.8E-16 6.1E-21 179.2 -1.5 252 119-382 193-463 (1081)
61 PLN03210 Resistant to P. syrin 99.5 5.8E-14 1.3E-18 178.7 17.6 102 125-230 611-714 (1153)
62 KOG0532 Leucine-rich repeat (L 99.5 1.6E-15 3.5E-20 164.4 -1.2 176 124-304 74-250 (722)
63 KOG4237 Extracellular matrix p 99.5 7.6E-15 1.6E-19 152.7 -0.9 249 126-389 68-364 (498)
64 KOG4237 Extracellular matrix p 99.4 3.2E-15 7E-20 155.4 -4.0 214 115-333 81-339 (498)
65 PLN03210 Resistant to P. syrin 99.4 1.7E-12 3.7E-17 165.4 19.1 254 114-382 547-813 (1153)
66 cd00116 LRR_RI Leucine-rich re 99.4 7.4E-14 1.6E-18 154.0 2.2 211 120-331 46-293 (319)
67 KOG0513 Ca2+-independent phosp 99.4 1.9E-12 4.1E-17 144.9 12.6 304 534-898 29-402 (503)
68 cd00116 LRR_RI Leucine-rich re 99.4 8.7E-14 1.9E-18 153.4 1.5 209 119-327 75-318 (319)
69 KOG0513 Ca2+-independent phosp 99.4 7.2E-13 1.6E-17 148.2 8.3 212 534-806 288-503 (503)
70 KOG1259 Nischarin, modulator o 99.3 1.5E-13 3.3E-18 137.7 -0.0 207 120-332 177-415 (490)
71 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.3E-18 150.4 -2.8 175 119-298 92-270 (722)
72 COG4886 Leucine-rich repeat (L 99.3 3.2E-12 7E-17 145.2 5.6 176 148-331 115-292 (394)
73 KOG3207 Beta-tubulin folding c 99.2 7.2E-13 1.6E-17 140.1 -0.8 185 123-308 119-321 (505)
74 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.4E-17 137.6 0.4 187 119-305 140-343 (505)
75 COG4886 Leucine-rich repeat (L 99.2 7.9E-12 1.7E-16 142.1 5.9 182 119-303 110-292 (394)
76 PF14580 LRR_9: Leucine-rich r 99.2 5.8E-12 1.3E-16 122.8 3.5 103 198-302 20-127 (175)
77 KOG1259 Nischarin, modulator o 99.2 2.3E-12 5E-17 129.4 0.3 137 169-307 279-418 (490)
78 PF14580 LRR_9: Leucine-rich r 99.2 9.5E-12 2.1E-16 121.3 3.8 123 172-296 17-148 (175)
79 PLN03200 cellulose synthase-in 99.0 6.8E-10 1.5E-14 140.8 10.5 155 368-522 404-559 (2102)
80 KOG1909 Ran GTPase-activating 98.9 1.2E-10 2.6E-15 120.4 -1.0 231 92-328 30-310 (382)
81 PLN03200 cellulose synthase-in 98.9 6.8E-09 1.5E-13 132.0 10.4 160 371-530 365-526 (2102)
82 KOG0531 Protein phosphatase 1, 98.8 3E-10 6.5E-15 129.4 -1.6 197 122-330 69-269 (414)
83 KOG0531 Protein phosphatase 1, 98.8 2.2E-10 4.8E-15 130.4 -3.2 177 146-330 69-246 (414)
84 KOG1909 Ran GTPase-activating 98.8 6.1E-10 1.3E-14 115.3 -1.0 184 118-302 85-312 (382)
85 KOG1859 Leucine-rich repeat pr 98.8 2E-10 4.3E-15 128.3 -6.0 106 198-305 165-271 (1096)
86 PLN03150 hypothetical protein; 98.7 2.2E-08 4.7E-13 119.4 7.9 105 150-255 419-527 (623)
87 PLN03150 hypothetical protein; 98.6 5.3E-08 1.1E-12 116.1 8.9 105 175-279 419-528 (623)
88 cd00020 ARM Armadillo/beta-cat 98.6 1.3E-07 2.8E-12 87.4 9.7 118 404-521 2-119 (120)
89 KOG2982 Uncharacterized conser 98.6 1.3E-08 2.8E-13 103.0 1.4 177 119-302 65-263 (418)
90 KOG4224 Armadillo repeat prote 98.6 5.5E-08 1.2E-12 100.5 5.2 152 378-531 95-246 (550)
91 KOG3773 Adiponutrin and relate 98.5 8.6E-08 1.9E-12 98.7 5.6 167 541-785 7-176 (354)
92 KOG1859 Leucine-rich repeat pr 98.5 9.5E-10 2.1E-14 123.0 -9.9 127 173-302 163-293 (1096)
93 KOG4224 Armadillo repeat prote 98.5 6.1E-07 1.3E-11 92.9 10.8 174 348-524 148-323 (550)
94 KOG4658 Apoptotic ATPase [Sign 98.5 7.6E-08 1.7E-12 117.1 4.9 155 120-276 518-678 (889)
95 KOG4658 Apoptotic ATPase [Sign 98.5 6.3E-08 1.4E-12 117.8 3.8 178 123-302 543-731 (889)
96 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.4E-12 75.3 3.8 55 199-253 3-59 (61)
97 PF13855 LRR_8: Leucine rich r 98.4 1.3E-07 2.9E-12 75.7 3.0 59 126-185 2-60 (61)
98 KOG4579 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 91.5 -3.9 107 176-282 29-139 (177)
99 KOG1644 U2-associated snRNP A' 98.2 2.3E-06 5E-11 82.6 6.1 81 198-279 43-126 (233)
100 KOG4579 Leucine-rich repeat (L 98.2 6.5E-08 1.4E-12 87.1 -4.4 110 127-238 29-141 (177)
101 KOG2120 SCF ubiquitin ligase, 98.1 7.9E-08 1.7E-12 97.4 -6.2 170 127-297 187-372 (419)
102 KOG1644 U2-associated snRNP A' 98.1 6.6E-06 1.4E-10 79.5 6.1 102 173-275 41-149 (233)
103 COG5238 RNA1 Ran GTPase-activa 98.0 1.3E-06 2.8E-11 87.7 0.7 182 120-302 25-256 (388)
104 cd00020 ARM Armadillo/beta-cat 98.0 1.5E-05 3.2E-10 73.6 7.6 111 369-479 8-119 (120)
105 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.5E-11 86.7 2.1 162 147-308 69-244 (418)
106 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 60.7 3.4 33 200-232 4-36 (44)
107 PRK15386 type III secretion pr 97.9 1.8E-05 3.9E-10 86.7 7.6 134 121-277 48-188 (426)
108 PF12799 LRR_4: Leucine Rich r 97.9 8.3E-06 1.8E-10 59.9 3.4 40 174-213 1-40 (44)
109 KOG3665 ZYG-1-like serine/thre 97.9 1.5E-05 3.3E-10 94.9 7.5 81 421-502 318-398 (699)
110 KOG2120 SCF ubiquitin ligase, 97.9 7.5E-07 1.6E-11 90.5 -4.3 157 119-277 204-374 (419)
111 PF04826 Arm_2: Armadillo-like 97.8 9.5E-05 2.1E-09 77.1 10.6 156 370-531 14-172 (254)
112 PRK15386 type III secretion pr 97.8 4.8E-05 1E-09 83.5 8.6 134 145-299 48-188 (426)
113 COG5238 RNA1 Ran GTPase-activa 97.8 5E-06 1.1E-10 83.6 0.0 248 69-331 15-318 (388)
114 KOG3665 ZYG-1-like serine/thre 97.8 8.4E-06 1.8E-10 97.0 1.5 128 174-302 122-264 (699)
115 PF05804 KAP: Kinesin-associat 97.7 0.0001 2.3E-09 87.0 9.6 171 368-556 290-461 (708)
116 PF05804 KAP: Kinesin-associat 97.6 0.00024 5.2E-09 84.0 10.8 142 383-528 264-405 (708)
117 PF00514 Arm: Armadillo/beta-c 97.6 0.00015 3.2E-09 52.6 5.4 40 440-479 1-40 (41)
118 KOG2739 Leucine-rich acidic nu 97.5 4.4E-05 9.6E-10 77.2 1.6 87 170-257 39-130 (260)
119 KOG1048 Neural adherens juncti 97.5 0.00053 1.2E-08 79.3 10.2 118 412-529 236-356 (717)
120 PF10508 Proteasom_PSMB: Prote 97.4 0.001 2.2E-08 77.4 12.5 216 371-612 80-296 (503)
121 KOG2739 Leucine-rich acidic nu 97.3 0.00014 3E-09 73.8 2.6 39 264-302 89-130 (260)
122 KOG2123 Uncharacterized conser 97.2 2.1E-05 4.5E-10 79.5 -3.7 82 173-256 18-101 (388)
123 cd00147 cPLA2_like Cytosolic p 97.2 0.0011 2.3E-08 74.2 8.7 62 537-601 40-103 (438)
124 KOG4199 Uncharacterized conser 97.0 0.0024 5.2E-08 66.4 8.0 143 381-524 255-405 (461)
125 KOG4199 Uncharacterized conser 96.9 0.004 8.7E-08 64.8 9.4 164 366-530 281-452 (461)
126 KOG2123 Uncharacterized conser 96.9 4.5E-05 9.7E-10 77.2 -5.2 80 196-277 18-99 (388)
127 PF04826 Arm_2: Armadillo-like 96.5 0.0051 1.1E-07 64.3 6.5 154 362-521 48-204 (254)
128 PF13306 LRR_5: Leucine rich r 96.2 0.012 2.7E-07 54.8 7.1 84 119-206 6-90 (129)
129 PF00514 Arm: Armadillo/beta-c 96.1 0.0017 3.6E-08 47.0 0.5 38 484-521 3-40 (41)
130 KOG4308 LRR-containing protein 96.0 7E-05 1.5E-09 85.5 -11.1 176 127-302 89-304 (478)
131 smart00185 ARM Armadillo/beta- 96.0 0.014 3.1E-07 41.9 4.8 38 443-480 4-41 (41)
132 PF13306 LRR_5: Leucine rich r 96.0 0.017 3.6E-07 53.9 6.5 104 143-252 6-112 (129)
133 KOG2160 Armadillo/beta-catenin 95.7 0.054 1.2E-06 57.9 9.5 139 383-521 98-239 (342)
134 PF10508 Proteasom_PSMB: Prote 95.6 0.017 3.6E-07 67.5 6.0 142 366-508 117-258 (503)
135 KOG4308 LRR-containing protein 95.4 0.00026 5.7E-09 80.9 -9.6 182 150-331 88-305 (478)
136 KOG4500 Rho/Rac GTPase guanine 95.4 0.029 6.3E-07 60.5 6.1 159 367-525 86-256 (604)
137 KOG2122 Beta-catenin-binding p 95.2 0.015 3.2E-07 71.2 3.8 162 363-524 432-603 (2195)
138 KOG0473 Leucine-rich repeat pr 95.1 0.00073 1.6E-08 66.9 -6.3 82 196-277 41-122 (326)
139 PF13513 HEAT_EZ: HEAT-like re 95.0 0.0097 2.1E-07 46.2 1.1 55 465-520 1-55 (55)
140 KOG2160 Armadillo/beta-catenin 95.0 0.061 1.3E-06 57.5 7.3 154 367-520 123-280 (342)
141 KOG3678 SARM protein (with ste 95.0 0.038 8.2E-07 60.0 5.7 160 370-531 182-345 (832)
142 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.8E-07 35.8 1.2 19 222-240 2-20 (22)
143 PF13513 HEAT_EZ: HEAT-like re 94.8 0.08 1.7E-06 41.0 5.8 54 424-478 2-55 (55)
144 KOG0473 Leucine-rich repeat pr 94.7 0.00095 2.1E-08 66.1 -6.5 87 170-256 38-124 (326)
145 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 35.4 0.9 18 176-193 2-19 (22)
146 PRK09687 putative lyase; Provi 94.5 0.18 3.8E-06 54.0 9.4 63 452-523 160-222 (280)
147 PF13646 HEAT_2: HEAT repeats; 94.3 0.082 1.8E-06 45.4 5.3 85 412-518 2-88 (88)
148 KOG1048 Neural adherens juncti 93.9 0.076 1.7E-06 62.1 5.4 155 376-532 527-694 (717)
149 cd07202 cPLA2_Grp-IVC Group IV 93.8 0.11 2.3E-06 57.3 6.1 63 537-602 37-103 (430)
150 PRK09687 putative lyase; Provi 93.7 0.17 3.7E-06 54.1 7.4 128 373-521 28-156 (280)
151 cd07201 cPLA2_Grp-IVB-IVD-IVE- 93.3 0.13 2.9E-06 58.3 5.7 74 538-614 52-127 (541)
152 KOG4646 Uncharacterized conser 93.2 0.16 3.5E-06 46.2 5.1 117 380-497 29-145 (173)
153 smart00185 ARM Armadillo/beta- 92.8 0.052 1.1E-06 38.9 1.2 37 485-521 4-40 (41)
154 KOG0168 Putative ubiquitin fus 92.4 0.22 4.7E-06 58.4 6.1 148 370-523 213-365 (1051)
155 PF13504 LRR_7: Leucine rich r 92.2 0.089 1.9E-06 29.8 1.4 14 175-188 2-15 (17)
156 PF13504 LRR_7: Leucine rich r 92.1 0.086 1.9E-06 29.9 1.3 15 198-212 2-16 (17)
157 KOG1293 Proteins containing ar 90.7 0.41 9E-06 54.8 5.9 143 381-523 390-534 (678)
158 PF13646 HEAT_2: HEAT repeats; 90.3 0.4 8.6E-06 41.0 4.4 61 453-524 1-62 (88)
159 PF11698 V-ATPase_H_C: V-ATPas 90.2 0.19 4.1E-06 45.4 2.2 70 451-520 43-113 (119)
160 KOG1947 Leucine rich repeat pr 90.0 0.098 2.1E-06 61.0 0.3 187 121-307 184-420 (482)
161 KOG2122 Beta-catenin-binding p 88.8 0.29 6.2E-06 60.6 2.9 126 357-482 470-603 (2195)
162 cd07200 cPLA2_Grp-IVA Group IV 88.6 0.42 9E-06 54.5 3.9 62 538-602 43-109 (505)
163 smart00369 LRR_TYP Leucine-ric 87.3 0.44 9.6E-06 30.3 1.9 16 198-213 3-18 (26)
164 smart00370 LRR Leucine-rich re 87.3 0.44 9.6E-06 30.3 1.9 16 198-213 3-18 (26)
165 PRK13800 putative oxidoreducta 86.7 2.1 4.6E-05 54.0 9.0 114 377-522 723-836 (897)
166 smart00370 LRR Leucine-rich re 86.5 0.53 1.1E-05 29.9 1.9 19 220-238 2-20 (26)
167 smart00369 LRR_TYP Leucine-ric 86.5 0.53 1.1E-05 29.9 1.9 19 220-238 2-20 (26)
168 PRK13800 putative oxidoreducta 86.4 1 2.2E-05 56.9 5.9 122 371-521 745-866 (897)
169 KOG1947 Leucine rich repeat pr 85.6 0.18 3.9E-06 58.7 -1.1 128 146-273 185-328 (482)
170 PF03224 V-ATPase_H_N: V-ATPas 85.6 0.95 2E-05 49.5 4.5 147 376-524 113-271 (312)
171 smart00022 PLAc Cytoplasmic ph 85.5 0.82 1.8E-05 53.0 4.1 59 538-596 75-138 (549)
172 KOG0168 Putative ubiquitin fus 85.1 3.6 7.8E-05 48.9 8.9 100 422-521 181-283 (1051)
173 KOG1222 Kinesin associated pro 85.1 2.1 4.4E-05 47.4 6.6 121 384-506 279-399 (791)
174 KOG1293 Proteins containing ar 84.9 2 4.3E-05 49.6 6.6 108 422-529 390-497 (678)
175 KOG2023 Nuclear transport rece 84.9 1.3 2.8E-05 51.0 5.1 110 410-524 129-246 (885)
176 KOG1325 Lysophospholipase [Lip 84.3 0.65 1.4E-05 53.1 2.5 61 538-598 47-112 (571)
177 PF02985 HEAT: HEAT repeat; I 84.0 1.9 4.2E-05 28.7 3.8 29 452-480 1-29 (31)
178 KOG4500 Rho/Rac GTPase guanine 83.2 5 0.00011 44.0 8.4 115 404-520 309-429 (604)
179 PF12755 Vac14_Fab1_bd: Vacuol 83.2 3.3 7.1E-05 36.4 5.9 88 428-517 5-92 (97)
180 PF01735 PLA2_B: Lysophospholi 83.2 1.5 3.3E-05 50.7 5.0 50 542-591 2-57 (491)
181 TIGR02270 conserved hypothetic 81.8 7.1 0.00015 44.1 9.5 121 371-524 89-209 (410)
182 PF12348 CLASP_N: CLASP N term 79.6 3.9 8.5E-05 42.3 6.2 139 380-524 65-208 (228)
183 KOG4341 F-box protein containi 78.2 1 2.2E-05 49.2 1.3 174 122-295 265-459 (483)
184 cd07203 cPLA2_Fungal_PLB Funga 77.4 1.4 3.1E-05 50.7 2.3 77 538-614 62-148 (552)
185 PF02985 HEAT: HEAT repeat; I 77.3 1.5 3.3E-05 29.2 1.5 28 495-522 2-29 (31)
186 PF11698 V-ATPase_H_C: V-ATPas 77.3 4.1 8.8E-05 37.0 4.6 70 411-480 45-115 (119)
187 KOG2023 Nuclear transport rece 77.2 3.8 8.2E-05 47.4 5.4 156 367-524 127-287 (885)
188 KOG4341 F-box protein containi 76.5 1.3 2.9E-05 48.4 1.6 154 120-273 289-459 (483)
189 smart00364 LRR_BAC Leucine-ric 75.0 1.9 4.1E-05 27.4 1.3 16 198-213 3-18 (26)
190 KOG4646 Uncharacterized conser 75.0 7.4 0.00016 35.8 5.6 81 380-460 70-150 (173)
191 KOG2171 Karyopherin (importin) 74.3 10 0.00023 46.8 8.4 141 380-521 401-548 (1075)
192 smart00364 LRR_BAC Leucine-ric 73.2 1.9 4.1E-05 27.4 1.0 17 221-237 3-19 (26)
193 KOG3864 Uncharacterized conser 71.9 0.43 9.3E-06 47.1 -3.1 32 197-228 151-184 (221)
194 smart00365 LRR_SD22 Leucine-ri 71.9 3.1 6.7E-05 26.6 1.8 19 288-306 2-20 (26)
195 smart00365 LRR_SD22 Leucine-ri 69.5 3.8 8.2E-05 26.2 1.8 18 266-283 2-19 (26)
196 PF03224 V-ATPase_H_N: V-ATPas 69.4 6.7 0.00015 42.8 5.1 151 379-531 68-236 (312)
197 KOG2171 Karyopherin (importin) 68.5 14 0.0003 45.8 7.6 105 416-521 355-460 (1075)
198 PF09759 Atx10homo_assoc: Spin 68.3 14 0.0003 32.7 5.7 64 427-490 4-69 (102)
199 PF01602 Adaptin_N: Adaptin N 67.8 22 0.00048 41.9 9.5 133 373-520 47-179 (526)
200 PF14664 RICTOR_N: Rapamycin-i 67.5 21 0.00047 39.8 8.5 153 373-530 30-184 (371)
201 KOG1222 Kinesin associated pro 67.4 24 0.00053 39.4 8.5 137 387-524 524-665 (791)
202 PF09759 Atx10homo_assoc: Spin 66.9 7.6 0.00017 34.2 3.8 63 468-530 3-68 (102)
203 KOG3678 SARM protein (with ste 63.9 26 0.00057 38.9 7.9 117 403-523 174-294 (832)
204 TIGR02270 conserved hypothetic 63.3 8 0.00017 43.7 4.2 116 411-549 88-203 (410)
205 cd00256 VATPase_H VATPase_H, r 61.5 6 0.00013 44.7 2.7 70 451-520 353-423 (429)
206 KOG2973 Uncharacterized conser 61.0 19 0.0004 38.2 5.9 111 414-529 8-118 (353)
207 PF12717 Cnd1: non-SMC mitotic 60.7 49 0.0011 32.6 8.9 92 423-523 2-93 (178)
208 KOG4413 26S proteasome regulat 60.4 9.5 0.00021 40.3 3.7 98 424-524 58-159 (524)
209 PF08569 Mo25: Mo25-like; Int 59.8 48 0.001 36.4 9.3 144 381-524 136-285 (335)
210 KOG1241 Karyopherin (importin) 59.6 26 0.00056 41.6 7.3 118 405-523 356-478 (859)
211 COG5096 Vesicle coat complex, 56.2 37 0.0008 41.1 8.1 99 415-523 98-196 (757)
212 PRK00175 metX homoserine O-ace 54.8 24 0.00052 39.7 6.3 54 537-593 89-167 (379)
213 PF13516 LRR_6: Leucine Rich r 54.5 11 0.00023 23.3 1.9 23 370-393 1-23 (24)
214 cd00256 VATPase_H VATPase_H, r 54.1 39 0.00084 38.3 7.5 143 379-523 112-259 (429)
215 PF05536 Neurochondrin: Neuroc 53.2 29 0.00064 40.9 6.8 138 382-521 71-212 (543)
216 KOG4231 Intracellular membrane 52.7 2 4.3E-05 47.8 -2.7 80 220-303 104-183 (763)
217 PF14668 RICTOR_V: Rapamycin-i 51.7 18 0.00039 29.8 3.3 63 467-530 3-66 (73)
218 KOG4535 HEAT and armadillo rep 50.9 13 0.00029 41.4 3.1 127 383-524 448-605 (728)
219 KOG3763 mRNA export factor TAP 50.5 8 0.00017 44.2 1.4 16 242-257 217-232 (585)
220 KOG2734 Uncharacterized conser 50.3 32 0.0007 38.2 5.8 126 400-525 115-258 (536)
221 PF00698 Acyl_transf_1: Acyl t 50.0 35 0.00075 37.3 6.4 49 554-608 70-118 (318)
222 COG5369 Uncharacterized conser 49.9 16 0.00035 41.4 3.6 135 390-524 411-547 (743)
223 PF01602 Adaptin_N: Adaptin N 49.7 6.1 0.00013 46.7 0.4 143 370-523 154-297 (526)
224 KOG3763 mRNA export factor TAP 49.2 7.2 0.00016 44.5 0.8 63 195-258 216-285 (585)
225 smart00827 PKS_AT Acyl transfe 48.6 43 0.00092 36.1 6.8 48 555-608 69-116 (298)
226 PTZ00429 beta-adaptin; Provisi 48.6 39 0.00084 41.4 6.9 99 415-523 111-209 (746)
227 KOG0213 Splicing factor 3b, su 47.0 10 0.00023 44.4 1.6 139 379-521 810-953 (1172)
228 KOG0946 ER-Golgi vesicle-tethe 46.9 29 0.00063 41.4 5.1 144 385-531 40-205 (970)
229 KOG3864 Uncharacterized conser 46.3 4.3 9.4E-05 40.3 -1.3 80 127-206 103-185 (221)
230 TIGR01392 homoserO_Ac_trn homo 46.3 47 0.001 36.8 6.8 54 537-593 70-147 (351)
231 TIGR00128 fabD malonyl CoA-acy 42.9 58 0.0012 34.9 6.7 36 572-608 82-117 (290)
232 KOG2759 Vacuolar H+-ATPase V1 42.6 17 0.00038 40.0 2.4 70 451-520 366-436 (442)
233 PF11841 DUF3361: Domain of un 42.5 1.5E+02 0.0033 28.5 8.4 116 404-520 6-129 (160)
234 PF12755 Vac14_Fab1_bd: Vacuol 42.1 15 0.00033 32.2 1.6 55 468-523 3-57 (97)
235 COG5369 Uncharacterized conser 41.7 20 0.00044 40.7 2.8 99 427-525 407-505 (743)
236 COG5181 HSH155 U2 snRNP splice 41.6 13 0.00028 42.8 1.3 141 379-521 615-758 (975)
237 smart00368 LRR_RI Leucine rich 41.6 20 0.00043 23.2 1.7 13 198-210 3-15 (28)
238 PF11701 UNC45-central: Myosin 41.4 64 0.0014 31.1 6.0 97 419-517 53-154 (157)
239 PF12348 CLASP_N: CLASP N term 41.3 37 0.00079 34.9 4.6 105 419-524 17-125 (228)
240 PRK13604 luxD acyl transferase 41.3 48 0.001 35.8 5.5 50 537-591 62-126 (307)
241 PTZ00429 beta-adaptin; Provisi 40.2 71 0.0015 39.2 7.4 143 371-522 108-285 (746)
242 PF00756 Esterase: Putative es 40.0 29 0.00063 36.2 3.7 19 575-593 117-135 (251)
243 TIGR03131 malonate_mdcH malona 38.4 76 0.0017 34.1 6.8 48 553-606 61-108 (295)
244 PRK08775 homoserine O-acetyltr 38.3 75 0.0016 35.1 6.8 53 538-593 98-158 (343)
245 KOG1061 Vesicle coat complex A 38.2 1.3E+02 0.0029 36.0 8.8 97 379-484 97-193 (734)
246 PF05728 UPF0227: Uncharacteri 37.7 43 0.00092 33.4 4.2 17 575-591 61-77 (187)
247 smart00367 LRR_CC Leucine-rich 37.6 27 0.00059 22.0 1.8 25 370-394 1-25 (26)
248 PF10165 Ric8: Guanine nucleot 37.1 44 0.00095 38.4 4.8 82 420-501 43-130 (446)
249 COG5096 Vesicle coat complex, 34.2 1.2E+02 0.0027 36.8 7.9 94 379-481 103-196 (757)
250 PF14668 RICTOR_V: Rapamycin-i 34.1 1.1E+02 0.0024 25.2 5.3 53 385-437 4-57 (73)
251 TIGR00864 PCC polycystin catio 34.0 28 0.0006 47.9 2.7 42 272-313 1-44 (2740)
252 PF05536 Neurochondrin: Neuroc 33.9 1.7E+02 0.0038 34.6 9.1 116 413-531 9-137 (543)
253 PLN02965 Probable pheophorbida 33.9 82 0.0018 32.9 6.0 53 538-593 29-92 (255)
254 PF12717 Cnd1: non-SMC mitotic 32.9 1.4E+02 0.0029 29.5 7.0 93 381-481 1-93 (178)
255 COG5231 VMA13 Vacuolar H+-ATPa 32.2 24 0.00051 37.5 1.4 70 451-520 356-426 (432)
256 PF12719 Cnd3: Nuclear condens 31.9 2E+02 0.0044 30.9 8.8 102 417-523 35-144 (298)
257 KOG1454 Predicted hydrolase/ac 31.5 48 0.001 36.3 3.8 51 539-593 86-148 (326)
258 cd00707 Pancreat_lipase_like P 31.1 1.1E+02 0.0023 32.7 6.3 53 538-592 65-131 (275)
259 PF05004 IFRD: Interferon-rela 30.7 93 0.002 33.8 5.7 60 464-524 199-259 (309)
260 PF00446 GnRH: Gonadotropin-re 30.5 27 0.00058 16.8 0.7 8 3-10 2-9 (10)
261 PF08045 CDC14: Cell division 30.4 1.4E+02 0.003 31.3 6.6 82 425-506 107-189 (257)
262 PF10165 Ric8: Guanine nucleot 29.8 81 0.0018 36.3 5.4 69 462-530 43-117 (446)
263 KOG0213 Splicing factor 3b, su 29.1 72 0.0016 38.0 4.6 153 368-521 883-1064(1172)
264 COG0331 FabD (acyl-carrier-pro 28.9 1.3E+02 0.0028 32.7 6.4 52 553-608 68-119 (310)
265 PRK11071 esterase YqiA; Provis 28.4 1.6E+02 0.0034 29.4 6.6 50 539-593 32-81 (190)
266 PF03575 Peptidase_S51: Peptid 28.1 42 0.00091 32.2 2.3 42 541-587 37-82 (154)
267 PLN02752 [acyl-carrier protein 28.0 1.4E+02 0.003 33.1 6.7 54 555-609 105-159 (343)
268 COG1413 FOG: HEAT repeat [Ener 27.9 2.7E+02 0.0059 30.4 9.1 74 447-529 176-249 (335)
269 PF01764 Lipase_3: Lipase (cla 27.7 46 0.00099 31.0 2.5 17 576-592 67-83 (140)
270 KOG1241 Karyopherin (importin) 27.7 1E+02 0.0022 37.0 5.5 110 409-522 319-435 (859)
271 KOG2999 Regulator of Rac1, req 27.6 1.8E+02 0.0038 33.6 7.1 141 374-515 89-235 (713)
272 PRK05282 (alpha)-aspartyl dipe 26.5 42 0.0009 34.8 2.1 46 540-590 80-129 (233)
273 KOG2973 Uncharacterized conser 25.5 94 0.002 33.2 4.3 73 454-531 6-80 (353)
274 KOG2611 Neurochondrin/leucine- 25.1 3.8E+02 0.0082 30.6 8.9 127 414-557 16-161 (698)
275 KOG1517 Guanine nucleotide bin 24.9 3E+02 0.0065 34.6 8.8 171 351-521 537-731 (1387)
276 KOG3036 Protein involved in ce 24.4 6.6E+02 0.014 26.2 9.8 145 388-532 99-257 (293)
277 PF11841 DUF3361: Domain of un 24.4 2.6E+02 0.0056 27.0 6.7 73 406-478 55-129 (160)
278 PF06361 RTBV_P12: Rice tungro 24.0 34 0.00075 28.1 0.7 41 549-589 46-89 (110)
279 KOG4242 Predicted myosin-I-bin 23.3 85 0.0019 35.5 3.7 104 148-255 164-280 (553)
280 COG1413 FOG: HEAT repeat [Ener 23.2 2.9E+02 0.0063 30.2 8.2 97 411-529 45-142 (335)
281 PF04063 DUF383: Domain of unk 23.1 5.4E+02 0.012 25.8 9.1 81 430-512 79-165 (192)
282 KOG1242 Protein containing ada 22.3 1.3E+02 0.0029 35.1 5.2 106 418-528 225-333 (569)
283 KOG1967 DNA repair/transcripti 22.1 1.7E+02 0.0036 36.0 6.0 104 412-516 912-1018(1030)
284 PF14664 RICTOR_N: Rapamycin-i 20.8 5.2E+02 0.011 28.9 9.4 78 409-489 108-185 (371)
285 PF07859 Abhydrolase_3: alpha/ 20.2 73 0.0016 32.0 2.5 17 576-592 74-90 (211)
286 KOG2025 Chromosome condensatio 20.0 1.9E+02 0.0041 34.5 5.7 131 410-546 86-229 (892)
No 1
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-77 Score=623.86 Aligned_cols=690 Identities=63% Similarity=0.956 Sum_probs=515.3
Q ss_pred cccCCcchhHHHHHhhhhhhcCCCCCCceeeecCCCccCCcccCCcceeeehhhcCCCCCccEEEeecCCCCCcCccccc
Q 002472 67 WTSGEEEDQVALKLQSQLMVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIG 146 (918)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 146 (918)
|+.++.+++++..+.++++.++|.+.+.+++.++.. +.+ +..++.+++..-.+-..++...+..-.-++.--+..+
T Consensus 1 ~t~~~s~d~~~~~l~~~~~v~~~~~~~~~~~~~~~~---~~~-~l~~v~l~~~~~~~~~~~r~~~~~~~~~s~~~y~~~~ 76 (763)
T KOG4231|consen 1 WTAGDSEDQVALRLESQLMVALPAPHDTVVVELKDD---DEG-GLENVGLEMRVEKRREPLRAVTLMKAVGSGQQYDGVG 76 (763)
T ss_pred CCcccchhHHHHHhhhhhhhccCCCCceEEEEeccc---ccc-ccchhhhhhhhhhcccchhhhHHHhhhcCCcccCCcc
Confidence 778899999999999999999999999999999743 222 5666666655444444444333322111121111222
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceee
Q 002472 147 VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLI 226 (918)
Q Consensus 147 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 226 (918)
.+.+|-.+-++-- .|... .-++|.. ....-+.+.++++.+...|..+..|+.|+.+.
T Consensus 77 ~~~~l~~~~~a~~------ap~~~---------~~~~~~~--------~~~~~t~~s~s~~~~~~~~~~vt~l~~~~~~~ 133 (763)
T KOG4231|consen 77 VLTRLMMMPAAIP------APAID---------VASSCGV--------HWKTVTSLSLSGCGLLVMPVEVTELPLLEKLC 133 (763)
T ss_pred hheeeeeeeccCC------Ccchh---------hhhceee--------eeeeeeecccccceeccChHHHHhhhhhhHHH
Confidence 2333332222210 01000 0000100 11223445555565555566666666666666
Q ss_pred cccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCc-CcCCCCCCcEEEccCCCCCCCcC
Q 002472 227 VDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVADEN 305 (918)
Q Consensus 227 Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~-~l~~l~~L~~L~L~~N~i~~~~~ 305 (918)
+..|+++..|..+.++.++..+.+. ..+..+....-+-++.+..|.....+ .+..
T Consensus 134 ~~~~k~s~~~~li~k~~~~~i~r~~-----s~~d~l~~~~pf~e~s~~~~~~~~p~g~~~~------------------- 189 (763)
T KOG4231|consen 134 LEHNKLSVLPPLIGKLKNLKILRVD-----SVPDELRQCVPFVELSLEHNKLVRPLGDFRS------------------- 189 (763)
T ss_pred HHHhhhccchhhhhhhhhHHHhccC-----CccccccccCCchhhhhhccCccCCCccccc-------------------
Confidence 6666666666655555544444332 12222333333333333333332111 1100
Q ss_pred cchhhhhhcccCCccccccccccchhhhhhhhccCCCCchhhHHHHhhhccCCCceeecccccccCcccEEECcCCcchh
Q 002472 306 LRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVV 385 (918)
Q Consensus 306 l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~~l~~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~ 385 (918)
+.. .-.+-.++.-+...++...+.++.-+++..+.....+.+......|...+.....++..++...-|+ ..+.
T Consensus 190 ~~~-----~~~~ts~fg~S~~~lSn~~~~~Fk~~~~~~~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvV 263 (763)
T KOG4231|consen 190 LGQ-----RAENTSYFGASRHKLSNFSPLIFKSSSCHHPLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVV 263 (763)
T ss_pred ccC-----cccccccccchhhhhhccchHhhccccccchhHHHHHHHHhhCcccceeecccchhhhhhccccccc-chhh
Confidence 000 0122234444555566666777777778777777777777788888776655555566666655554 5677
Q ss_pred HHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCCh
Q 002472 386 EQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNP 465 (918)
Q Consensus 386 e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~ 465 (918)
++++.++...+.+...-..++.+.++.+--..++...+. +..-++.+..+.+.++...|++........|..+..+.++
T Consensus 264 ek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~ 342 (763)
T KOG4231|consen 264 EKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNP 342 (763)
T ss_pred cccccccccHHHHHHHHHHHHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccCh
Confidence 777777766664443335555555555433333332233 4456788888888888888888888888889999999999
Q ss_pred hHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHhhcCCCCCCcceEEEe
Q 002472 466 EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPKQGLRILSM 545 (918)
Q Consensus 466 ~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~riL~L 545 (918)
.++.+|..++++++++.++++....+..+...+++++...++++.+.+..|++.+++++-+++.+++++.+++|+|||++
T Consensus 343 ~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~eil~~~~~~~~vkg~G~rILSi 422 (763)
T KOG4231|consen 343 ELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGENEILRRSIKGRQVKGQGLRILSI 422 (763)
T ss_pred HHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhhHHHHhhccccccCCCceEEEEe
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhH
Q 002472 546 DGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATW 625 (918)
Q Consensus 546 dGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~~~~ 625 (918)
||||+||++.+.+|+.||+..|+++++.||+|||+|||||+|++|+...|+.+||.++|.++++.+|.+..+..++..+|
T Consensus 423 DGGGtrG~~~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k~m~l~eCeEiY~~lgk~vFsq~v~~g~~~~sw 502 (763)
T KOG4231|consen 423 DGGGTRGLATLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVKLMTLEECEEIYKNLGKLVFSQSVPKGNEAASW 502 (763)
T ss_pred cCCCccchhHHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhcCccHHHHHHHHHHHhHHHhhccccccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccC-CCcceEeccCCCC
Q 002472 626 REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVM-PAQPFIFRNYQYP 704 (918)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~-~~~~~~f~ny~~~ 704 (918)
. .+.|++..+|++|++.+++ .++.......+..||+++++|.++.. +.+|++||||.+|
T Consensus 503 ~-------------------Hs~y~~n~we~iLKem~ge-d~~mi~tsr~~~~PkvavVStiVn~~pT~qpfIFRNY~hp 562 (763)
T KOG4231|consen 503 I-------------------HSKYSANEWERILKEMCGE-DGDMIITSRVKNVPKVAVVSTIVNVMPTAQPFIFRNYQHP 562 (763)
T ss_pred h-------------------hhhcchHHHHHHHHHHhhh-hhhHHHhhccCCCCceeehhhhhhcCCCccceeeeccCCC
Confidence 5 4789999999999999984 35556666678899999999988854 4899999999999
Q ss_pred CCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCCcHHH
Q 002472 705 AGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNPTIF 784 (918)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~NnP~~~ 784 (918)
.+. .++|.|+|+..+|+|+|||+|||.||..|..++..++|||+.+|||+..
T Consensus 563 ~G~----------------------------~Shy~Ggc~h~~WqAIrASsAAP~Yf~e~~lgn~l~QDGgi~aNNPta~ 614 (763)
T KOG4231|consen 563 VGT----------------------------QSHYMGGCKHQVWQAIRASSAAPYYFDEFSLGNYLWQDGGIVANNPTAF 614 (763)
T ss_pred CCc----------------------------chhhcccchHHHHHHHHhcccCCcchhhhccccceeccCcEeecCccHH
Confidence 765 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEECCCCCCCccCCCCcccccccceeeeeccchhHHHHHHHHHCCCCCCCCeEEeCCCCch
Q 002472 785 AIREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTLLPMLPEIQYYRFNPGSIS 862 (918)
Q Consensus 785 al~ea~~~~~~~~~~~vvSlGTG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~YfR~np~~~~ 862 (918)
|++||+.+||+.+++|+||||||+.+...++..|.+...++.|+++..+.+.+++.+.++.+|+++..||||||.+++
T Consensus 615 A~hEaklLWPD~~i~C~VSiGsGr~~t~Vr~~tv~yts~~~kL~~~i~SatdtEevh~~l~~mLPe~~YfRFNPvm~~ 692 (763)
T KOG4231|consen 615 AIHEAKLLWPDTKIDCLVSIGSGRVPTRVRKGTVRYTSTGQKLIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDR 692 (763)
T ss_pred HhhhhhccCCCCCccEEEEecCCcccccccCCceEEecHHHHHHHHHhcccchHHHHHhhhccCCchheEecchhhhc
Confidence 999999999999999999999999999988889999999998888766666677777777788889999999999753
No 2
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=100.00 E-value=9e-50 Score=433.11 Aligned_cols=277 Identities=47% Similarity=0.800 Sum_probs=225.1
Q ss_pred CCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccC
Q 002472 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFA 613 (918)
Q Consensus 534 ~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~ 613 (918)
+..++++|||||||||+||+++++||++||++++.+++++||+|+|||+|||||++++..+++++||.++|.+++.++|.
T Consensus 2 ~~~~~~~riLsLdGGGirG~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~~~iF~ 81 (308)
T cd07211 2 PVKGRGIRILSIDGGGTRGVVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLGKDVFS 81 (308)
T ss_pred CCCCCCcEEEEECCChHHHHHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999998889999999999999999997
Q ss_pred CCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccc--cCCCCEEEEEEeeeccC
Q 002472 614 EPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESS--VKNIPKVFTVSTLVNVM 691 (918)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~--~~~~~~~~v~~t~~~~~ 691 (918)
...+.. ...+.++.+++|+.+.+++++++++++. .+.+. ....++++++++.++..
T Consensus 82 ~~~~~~------------------~~~~~~~~~~~y~~~~l~~~l~~~~g~~----~l~~~~~~~~~p~~~v~st~~~~~ 139 (308)
T cd07211 82 QNTYIS------------------GTSRLVLSHAYYDTETWEKILKEMMGSD----ELIDTSADPNCPKVACVSTQVNRT 139 (308)
T ss_pred CCcccc------------------chhhhhccCCccChHHHHHHHHHHhCCc----cccccccCCCCCEEEEEEEeccCC
Confidence 643211 0011234578999999999999999643 22222 23457888888888888
Q ss_pred CCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCcee
Q 002472 692 PAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRW 771 (918)
Q Consensus 692 ~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~ 771 (918)
+.+|++|+||+.+.... ..+.+.++.++|||+|||||+|+||+|+++++..|
T Consensus 140 ~~~p~~f~ny~~~~~~~----------------------------~~~~~~~~~~l~dA~rASsAaP~~F~p~~i~~~~~ 191 (308)
T cd07211 140 PLKPYVFRNYNHPPGTR----------------------------SHYLGSCKHKLWEAIRASSAAPGYFEEFKLGNNLH 191 (308)
T ss_pred CCceEEEeCCCCCCCcc----------------------------cccCCcccccHHHHHHHhccchhcCCcEEECCCeE
Confidence 99999999998764321 11223447899999999999999999999999999
Q ss_pred eecccccCCcHHHHHHHHHHhCCCCCCCEEEEECCCCCCCccCCCCccccccccee---eeeccchhHHHHHHHHHCCCC
Q 002472 772 QDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVL---IESACSVDRAEEALSTLLPML 848 (918)
Q Consensus 772 vDGGl~~NnP~~~al~ea~~~~~~~~~~~vvSlGTG~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~ 848 (918)
+|||+.+|||+.+|+.||+.+||+.+++||||||||..+.......++...|...+ +..+++++.+|..+++++
T Consensus 192 vDGGv~aNnP~~~a~~ea~~~~~~~~i~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 268 (308)
T cd07211 192 QDGGLLANNPTALALHEAKLLWPDTPIQCLVSVGTGRYPSSVRLETGGYTSLKTKLLNLIDSATDTERVHTALDDLL--- 268 (308)
T ss_pred EECCcccCCcHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHHccChHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999998765432222222354443 445667888888888765
Q ss_pred CCCCeEEeCCCCchh
Q 002472 849 PEIQYYRFNPGSISV 863 (918)
Q Consensus 849 ~~~~YfR~np~~~~~ 863 (918)
.+.+||||||+++..
T Consensus 269 ~~~~Y~R~~~~~~~~ 283 (308)
T cd07211 269 PPDVYFRFNPVMSEC 283 (308)
T ss_pred CCCceEEecccccCC
Confidence 368999999998753
No 3
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=3.9e-47 Score=411.81 Aligned_cols=272 Identities=29% Similarity=0.414 Sum_probs=214.4
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCC--------CCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccc
Q 002472 540 LRILSMDGGGMKGLATVQILKEIEKGTGK--------RIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLV 611 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~~~vL~~Le~~~~~--------~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~i 611 (918)
+|||||||||+||+++++||++||++++. +++++||+|+|||||||||++|+..+++++||.++|.++++++
T Consensus 1 ~rILslDGGGiRGl~~~~iL~~le~~l~~~~~~~~~~~~~~~fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~~i 80 (309)
T cd07216 1 LNLLSLDGGGVRGLSSLLILKEIMERIDPKEGLDEPPKPCDYFDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAKKI 80 (309)
T ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHhhhccccCCCCChhHhcCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhHHh
Confidence 58999999999999999999999998763 7899999999999999999999987899999999999999999
Q ss_pred cCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCC--chhccccCCCCEEEEEEeeec
Q 002472 612 FAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGD--LLIESSVKNIPKVFTVSTLVN 689 (918)
Q Consensus 612 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~--~~~~~~~~~~~~~~v~~t~~~ 689 (918)
|.++.... .......++.|+.+.+++++++++++..-. ..+.+.....++++|+++..+
T Consensus 81 F~~~~~~~-------------------~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~ 141 (309)
T cd07216 81 FSRKRLRL-------------------IIGDLRTGARFDSKKLAEAIKVILKELGNDEDDLLDEGEEDGCKVFVCATDKD 141 (309)
T ss_pred CCCCCccc-------------------cccccccCCCCChHHHHHHHHHHHHhcCCCchhhhccccccCCCEEEEEEeeC
Confidence 97754321 011224467899999999999998643211 111111134567777776433
Q ss_pred cCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccC--C
Q 002472 690 VMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--D 767 (918)
Q Consensus 690 ~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~--~ 767 (918)
.+++|++|++|+.+.... .+.++++|+|+|||||+|+||+|+.+ +
T Consensus 142 -~~~~~~~f~~y~~~~~~~--------------------------------~~~~~~l~~a~rASsAaP~~f~p~~~~~~ 188 (309)
T cd07216 142 -VTGKAVRLRSYPSKDEPS--------------------------------LYKNATIWEAARATSAAPTFFDPVKIGPG 188 (309)
T ss_pred -CCCceEEEecCCCCCCCC--------------------------------cccCccHHHHHHHHhhhHhhCCCEEecCC
Confidence 499999999998543210 12378899999999999999999999 8
Q ss_pred CceeeecccccCCcHHHHHHHHHHhC--CCCCCCEEEEECCCCCCCccCCCCcccccccceeeeeccchhHHHHHHHHHC
Q 002472 768 VFRWQDGAIVANNPTIFAIREAQLLW--PDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTLL 845 (918)
Q Consensus 768 ~~~~vDGGl~~NnP~~~al~ea~~~~--~~~~~~~vvSlGTG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 845 (918)
+..|+|||+.+|||+..|+.||..+| ++..+++|||||||..+.......++...|...++++.++++..+..+...+
T Consensus 189 ~~~~vDGGv~~NnP~~~a~~ea~~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 268 (309)
T cd07216 189 GRTFVDGGLGANNPIREVWSEAVSLWEGLARLVGCLVSIGTGTPSIKSLGRSAEGAGLLKGLKDLVTDTEAEAKRFSAEH 268 (309)
T ss_pred CceEecCCcccCCcHHHHHHHHHHHhCCCCCCccEEEEECCCCCCCcccccchhHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 99999999999999999999999999 6677889999999998876554444455666778888888887766665432
Q ss_pred -CCCCCCCeEEeCCCCchh
Q 002472 846 -PMLPEIQYYRFNPGSISV 863 (918)
Q Consensus 846 -~~~~~~~YfR~np~~~~~ 863 (918)
....+.+||||||.+...
T Consensus 269 ~~~~~~~~Y~R~n~~~~~~ 287 (309)
T cd07216 269 SELDEEGRYFRFNVPHGLE 287 (309)
T ss_pred hccCCCCeEEEECCCCCCC
Confidence 233478999999998643
No 4
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=100.00 E-value=4.2e-45 Score=391.97 Aligned_cols=273 Identities=29% Similarity=0.503 Sum_probs=203.8
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~ 621 (918)
||||||||+||+++++||++||+++|.+++++||+|+|||||||||++++. +++++||.++|.++++++|.+.
T Consensus 1 ILsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~-g~s~~e~~~~y~~~~~~iF~~~------ 73 (312)
T cd07212 1 LLCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLH-GKSLREARRLYLRMKDRVFDGS------ 73 (312)
T ss_pred CEEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHc-CCCHHHHHHHHHHhhhhhCCCC------
Confidence 699999999999999999999999999999999999999999999999998 5999999999999999999652
Q ss_pred hhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccC
Q 002472 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (918)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny 701 (918)
..|+.+++++++++++++. ..+.+ ...|+++|+++..+..+.++++|+||
T Consensus 74 -------------------------~~y~~~~le~~L~~~~g~~---~~l~d--~~~p~~~v~~~~~~~~~~~~~~f~ny 123 (312)
T cd07212 74 -------------------------RPYNSEPLEEFLKREFGED---TKMTD--VKYPRLMVTGVLADRQPVQLHLFRNY 123 (312)
T ss_pred -------------------------CCCCChHHHHHHHHHHCcC---ccccc--cCCCeEEEEeEeccCCCcCceeeecC
Confidence 3578899999999999642 13333 23567777776666667888999999
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCCc
Q 002472 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (918)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~NnP 781 (918)
+.+........ . .. ...+...++.++|+|+|||+|||+||+|+ +.|+|||+.+|||
T Consensus 124 ~~~~~~~~~~~---------------~----~~-~~~~~~~~~~~l~~a~rASsAaP~~F~p~----~~~vDGGv~~NnP 179 (312)
T cd07212 124 DPPEDVEEPEK---------------N----AN-FLPPTDPAEQLLWRAARSSGAAPTYFRPM----GRFLDGGLIANNP 179 (312)
T ss_pred CCCCCchhccc---------------c----cc-ccccCCcccccHHHHHHhhcccccccccc----cceecCceeccCh
Confidence 86543211000 0 00 00122345789999999999999999999 4699999999999
Q ss_pred HHHHHHHHHHhC----------CCCCCCEEEEECCCCCCCccC--------CC--Cccc-ccc----cceeeeeccchhH
Q 002472 782 TIFAIREAQLLW----------PDTRIDCLVSIGCGSVPTKTR--------RG--GWRY-LDT----GQVLIESACSVDR 836 (918)
Q Consensus 782 ~~~al~ea~~~~----------~~~~~~~vvSlGTG~~~~~~~--------~~--~~~~-~~~----~~~l~~~~~~~~~ 836 (918)
+.+|+.|++.++ +..+++||||||||..+.... .+ +|.. +.+ ...+++.+++++.
T Consensus 180 ~~~a~~Ea~~~~~~~~~~~~~~~~~~i~~vvSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~t~t~~ 259 (312)
T cd07212 180 TLDAMTEIHEYNKTLKSKGRKNKVKKIGCVVSLGTGIIPQTPVNTVDVFRPSNPWELAKTVFGAKNLGKMVVDQCTASDG 259 (312)
T ss_pred HHHHHHHHHHhcccccccccCCCCCcccEEEEeCCCCCCCcccCCcccccCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998742 455788999999999876421 11 2221 111 2345556666665
Q ss_pred HHHHH-HHHCCCCCCCCeEEeCCCCc----------hhhhhhcccccceeec
Q 002472 837 AEEAL-STLLPMLPEIQYYRFNPGSI----------SVMFSLLFFSFCCYRG 877 (918)
Q Consensus 837 ~~~~~-~~~~~~~~~~~YfR~np~~~----------~~~~~~~~~~~~~~~~ 877 (918)
.+... +.+.... +.+||||||++. +.|..|+|++. .|+.
T Consensus 260 ~~~~~~~~~~~~~-~~~Y~Rfn~~l~~~~~lde~~~~~l~~l~~~~~-~yi~ 309 (312)
T cd07212 260 APVDRARAWCESI-GIPYFRFSPPLSKDIMLDETDDEDLVNMLWDTE-VYIY 309 (312)
T ss_pred hHHHHHHHHHHhc-CCceEEeCCccCCCcCCCcCCHHHHHHHHHHHH-HHHH
Confidence 44322 2232222 679999999964 66778888887 5554
No 5
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=6.7e-45 Score=397.02 Aligned_cols=262 Identities=26% Similarity=0.382 Sum_probs=207.4
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhc-------CCCCccccceeeecChHHHHHHHHHc------CCCCHHHHHHHHHHh
Q 002472 541 RILSMDGGGMKGLATVQILKEIEKGT-------GKRIHELFDLVCGTSTGGMLAIALAV------KLMTLDQCEEIYKNL 607 (918)
Q Consensus 541 riL~LdGGG~rG~~~~~vL~~Le~~~-------~~~~~~~fD~i~GTS~Gaiia~~l~~------~~~s~~~~~~~y~~~ 607 (918)
|||||||||+||+++++||++||+++ +.+++++||+|+|||||||||++++. .+++++||.++|.+.
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~ 80 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLER 80 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHh
Confidence 79999999999999999999999976 35789999999999999999999864 368999999999999
Q ss_pred hccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEee
Q 002472 608 GKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTL 687 (918)
Q Consensus 608 ~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~ 687 (918)
+.+||..+.... +. ....+.+++|+.+.|+++++++|+ +..+.+...+ + ++++
T Consensus 81 ~~~IF~~~~~~~---------~~---------~~~~~~~~~y~~~~L~~~L~~~fg----~~~l~d~~~~---~--~i~a 133 (329)
T cd07215 81 GNYIFKKKIWNK---------IK---------SRGGFLNEKYSHKPLEEVLLEYFG----DTKLSELLKP---C--LITS 133 (329)
T ss_pred hHhhcccchhhh---------hh---------hhccccccccCcHHHHHHHHHHhC----CCchhhhcCC---c--eEEe
Confidence 999997642110 00 011245789999999999999995 4445554432 2 3445
Q ss_pred eccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCC
Q 002472 688 VNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD 767 (918)
Q Consensus 688 ~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~ 767 (918)
++..+++|++|+++...... ..++++|||+|||||||+||||+.++
T Consensus 134 ~d~~~~~~~~f~~~~~~~~~----------------------------------~~~~~l~da~~ASsAaP~~F~p~~i~ 179 (329)
T cd07215 134 YDIERRSPHFFKSHTAIKNE----------------------------------QRDFYVRDVARATSAAPTYFEPARIH 179 (329)
T ss_pred eecCCCCceEecCcccCCCc----------------------------------ccCccHHHHhHHHhhcccccCceEee
Confidence 78999999999987543211 12678999999999999999999875
Q ss_pred C-----ceeeecccccCCcHHHHHHHHHHhCC------CCCCCEEEEECCCCCCCccC---CCCcccccccceeee--ec
Q 002472 768 V-----FRWQDGAIVANNPTIFAIREAQLLWP------DTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE--SA 831 (918)
Q Consensus 768 ~-----~~~vDGGl~~NnP~~~al~ea~~~~~------~~~~~~vvSlGTG~~~~~~~---~~~~~~~~~~~~l~~--~~ 831 (918)
+ ..|+|||+.+|||+.+|+.||..+|. +.+..+|||||||..+.... ..+|+...|..++++ +.
T Consensus 180 ~~~g~~~~~vDGGv~aNnP~~~a~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~~~W~~~l~~~~~~ 259 (329)
T cd07215 180 SLTGEKYTLIDGGVFANNPTLCAYAEARKLKFEQPGKPTAKDMIILSLGTGKNKKSYTYEKVKDWGLLGWAKPLIDIMMD 259 (329)
T ss_pred cCCCcEEEEecCceecCCHHHHHHHHHHHhhccCcCCCCcCceEEEEecCCCCCCCCCHHHhcccCcccchHHHHHHHHh
Confidence 3 35899999999999999999999862 22345899999999876532 468999999988888 44
Q ss_pred cchhHHHHHHHHHCC-CCCCCCeEEeCCCCchh
Q 002472 832 CSVDRAEEALSTLLP-MLPEIQYYRFNPGSISV 863 (918)
Q Consensus 832 ~~~~~~~~~~~~~~~-~~~~~~YfR~np~~~~~ 863 (918)
...+.++..++++++ ...+.+||||||.++..
T Consensus 260 ~~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~l~~~ 292 (329)
T cd07215 260 GASQTVDYQLKQIFDAEGDQQQYLRIQPELEDA 292 (329)
T ss_pred hhHHHHHHHHHHHHhhcCCCCceEEEeCCCCCC
Confidence 557788888888775 33468999999998764
No 6
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=100.00 E-value=1.7e-44 Score=393.96 Aligned_cols=287 Identities=25% Similarity=0.390 Sum_probs=219.9
Q ss_pred CcceEEEecCCCchHHHHHHHHHHHHHhc------CCCCccccceeeecChHHHHHHHHHcC------CCCHHHHHHHHH
Q 002472 538 QGLRILSMDGGGMKGLATVQILKEIEKGT------GKRIHELFDLVCGTSTGGMLAIALAVK------LMTLDQCEEIYK 605 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~~~~vL~~Le~~~------~~~~~~~fD~i~GTS~Gaiia~~l~~~------~~s~~~~~~~y~ 605 (918)
+++|||||||||+||+++++||++||+++ +.++.++||+|+|||||||+|++|+.+ .++++|+.++|.
T Consensus 2 ~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~ 81 (349)
T cd07214 2 KFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYL 81 (349)
T ss_pred CceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHH
Confidence 57999999999999999999999999986 567899999999999999999999975 378999999999
Q ss_pred HhhccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEE
Q 002472 606 NLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVS 685 (918)
Q Consensus 606 ~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 685 (918)
+.+.+||.++.... ..|+..+.. +.+++|+.+.|+++++++++ +..+.+... + +++
T Consensus 82 ~~~~~iF~~~~~~~---~~~~~~~~~------------~~~~~y~~~~L~~~L~~~~g----d~~l~d~~~---~--v~I 137 (349)
T cd07214 82 ENGPKIFPQSTGQF---EDDRKKLRS------------LLGPKYDGVYLHDLLNELLG----DTRLSDTLT---N--VVI 137 (349)
T ss_pred HhhHHhcCCCcccc---hhHHHHHHH------------hccCccCcHHHHHHHHHHhc----cccHhhhCC---c--eEE
Confidence 99999997643211 112221111 23689999999999999994 445554433 2 344
Q ss_pred eeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCcc
Q 002472 686 TLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFS 765 (918)
Q Consensus 686 t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~ 765 (918)
+++|..+++|++|++|..+... ..+.++|||+|||||||+||||+.
T Consensus 138 ~a~dl~~~~p~~F~~~~~~~~~----------------------------------~~~~~l~da~rASSAaPtyFpp~~ 183 (349)
T cd07214 138 PTFDIKLLQPVIFSSSKAKNDK----------------------------------LTNARLADVCISTSAAPTYFPAHY 183 (349)
T ss_pred EeEECCCCCeEEEeCccccCCc----------------------------------ccCcCHHHHHHHhcccccccCCeE
Confidence 5579999999999998754221 126789999999999999999997
Q ss_pred CCC---------ceeeecccccCCcHHHHHHHHHHhC-------CC-----CCCCEEEEECCCCCCCccC---CCCcccc
Q 002472 766 DDV---------FRWQDGAIVANNPTIFAIREAQLLW-------PD-----TRIDCLVSIGCGSVPTKTR---RGGWRYL 821 (918)
Q Consensus 766 ~~~---------~~~vDGGl~~NnP~~~al~ea~~~~-------~~-----~~~~~vvSlGTG~~~~~~~---~~~~~~~ 821 (918)
+++ ..|+|||+.+|||+..|+.||...+ ++ .+..+|||||||..+.... ...|+..
T Consensus 184 i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~~ 263 (349)
T cd07214 184 FTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLVLSLGTGSAEESYKYNAAAKWGLI 263 (349)
T ss_pred eecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeEEEEEecCCCcccccChhhhccCCee
Confidence 642 4799999999999999999998653 21 1334899999998866532 3679888
Q ss_pred ccc-----ceeee--eccchhHHHHHHHHHCCCC-CCCCeEEeCCCCchhhhhhcccccceeeccccccccccccccccc
Q 002472 822 DTG-----QVLIE--SACSVDRAEEALSTLLPML-PEIQYYRFNPGSISVMFSLLFFSFCCYRGTSCHPQINSIPLDLNI 893 (918)
Q Consensus 822 ~~~-----~~l~~--~~~~~~~~~~~~~~~~~~~-~~~~YfR~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (918)
+|. .++++ +....+.++..++++++.. .+.+|+||||..+..- + ---++.++.||
T Consensus 264 ~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~---------------~--~~~d~~~~~ni 326 (349)
T cd07214 264 TWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGT---------------A--SSVDDATEENL 326 (349)
T ss_pred ecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCc---------------c--cCcccCCHHHH
Confidence 887 56877 4556789999999887533 3679999999865421 1 11355567788
Q ss_pred ccccch
Q 002472 894 DFLLPL 899 (918)
Q Consensus 894 ~~~~~~ 899 (918)
+.|...
T Consensus 327 ~~L~~~ 332 (349)
T cd07214 327 EKLVEI 332 (349)
T ss_pred HHHHHH
Confidence 777654
No 7
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.1e-40 Score=357.28 Aligned_cols=245 Identities=28% Similarity=0.429 Sum_probs=190.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCC
Q 002472 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (918)
Q Consensus 539 ~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~ 618 (918)
++|||||||||+||+++++||++||++ +.++.++||+|+|||||||+|++++.+ ++++++.++|.+....+|......
T Consensus 1 ~~riLsLdGGG~RGi~~~~vL~~Le~~-~~~~~~~fD~i~GTSaGaiia~~la~g-~~~~e~~~~~~~~~~~iF~~~~~~ 78 (288)
T cd07213 1 KYRILSLDGGGVKGIVQLVLLKRLAEE-FPSFLDQIDLFAGTSAGSLIALGLALG-YSPRQVLKLYEEVGLKVFSKSSAG 78 (288)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHHHHh-CcccccceeEEEEeCHHHHHHHHHHcC-cCHHHHHHHHHHhCccccCCCccc
Confidence 579999999999999999999999997 456789999999999999999999876 799999999999999999763321
Q ss_pred CchhhhHHHHHHHHhhhcccceeEEeecCCCCHH-HHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCc---
Q 002472 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSAD-QFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ--- 694 (918)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~--- 694 (918)
. .+.+..|... .+++++++++ ++..+.+.. .+++|++ ++..+++
T Consensus 79 ~-----------------------~~~~~~~~~~~~l~~~l~~~~----~~~~l~d~~---~~~~i~a--~~~~~~~~~~ 126 (288)
T cd07213 79 G-----------------------GAGNNQYFAAGFLKAFAEVFF----GDLTLGDLK---RKVLVPS--FQLDSGKDDP 126 (288)
T ss_pred c-----------------------ccccccCCchHHHHHHHHHHh----CcCCHhhcC---CCEEEEE--EeccCCCCCc
Confidence 1 0112334433 7888999998 444555543 2344444 4665554
Q ss_pred -----ceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCc
Q 002472 695 -----PFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVF 769 (918)
Q Consensus 695 -----~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~ 769 (918)
+++|+|+.... ..+.++|||++||||+|+||||+ +
T Consensus 127 ~~~~~~~~f~n~~~~~------------------------------------~~~~~l~d~~~ASsAaP~~F~p~----~ 166 (288)
T cd07213 127 NRRWKPKLFHNFPGEP------------------------------------DLDELLVDVCLRSSAAPTYFPSY----Q 166 (288)
T ss_pred cccccceEeecCCCCC------------------------------------CccccHHHHHHHhccccccchhh----h
Confidence 78998876321 11678999999999999999999 6
Q ss_pred eeeecccccCCcHHHHHHHHHH---hCCCCCCCEEEEECCCCCCCccC----CCCcccccccceeee--eccchhHHHHH
Q 002472 770 RWQDGAIVANNPTIFAIREAQL---LWPDTRIDCLVSIGCGSVPTKTR----RGGWRYLDTGQVLIE--SACSVDRAEEA 840 (918)
Q Consensus 770 ~~vDGGl~~NnP~~~al~ea~~---~~~~~~~~~vvSlGTG~~~~~~~----~~~~~~~~~~~~l~~--~~~~~~~~~~~ 840 (918)
.|+|||+.+|||+..|+.||.. .+++.+..+|||||||..+.... ...|+..+|..++++ +....+.++..
T Consensus 167 ~~iDGGv~~NnP~~~a~~~a~~~~~~~~~~~~i~vlSiGtG~~~~~~~~~~~~~~~G~~~w~~~l~~~~~~~~~~~~~~~ 246 (288)
T cd07213 167 GYVDGGVFANNPSLCAIAQAIGEEGLNIDLKDIVVLSLGTGRPPSYLDGANGYGDWGLLQWLPDLLDLFMDAGVDAADFQ 246 (288)
T ss_pred ceecceeecCChHHHHHHHHHhccccCCCcccEEEEEecCCCCCCCccchhhccccceecccchhHHHHHHHHHHHHHHH
Confidence 7999999999999999999985 34444445899999998866542 467999999988877 34455667777
Q ss_pred HHHHCCCCCCCCeEEeCCCCc
Q 002472 841 LSTLLPMLPEIQYYRFNPGSI 861 (918)
Q Consensus 841 ~~~~~~~~~~~~YfR~np~~~ 861 (918)
+++++ +++||||||.++
T Consensus 247 ~~~~~----~~~y~Ri~~~l~ 263 (288)
T cd07213 247 CRQLL----GERYFRLDPVLP 263 (288)
T ss_pred HHHHc----cCcEEEeCCCCC
Confidence 77654 579999999874
No 8
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=3.7e-39 Score=341.43 Aligned_cols=221 Identities=34% Similarity=0.602 Sum_probs=182.3
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCC--CccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKR--IHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~--~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~ 619 (918)
||||||||+||++++++|++||++++.+ +.++||+|+|||||||+|++++.++++++++.++|.+++.++|.
T Consensus 1 iLsldGGG~rG~~~~~~L~~le~~~~~~~~~~~~fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~~~if~------ 74 (258)
T cd07199 1 ILSLDGGGIRGIIPAEILAELEKRLGKPSRIADLFDLIAGTSTGGIIALGLALGRYSAEELVELYEELGRKIFP------ 74 (258)
T ss_pred CEEECCchHhHHHHHHHHHHHHHHhCCCCchhhccceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHhHhhcc------
Confidence 6999999999999999999999999887 99999999999999999999998879999999999988776661
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
++ ++++++..+++|++|+
T Consensus 75 ------------------------------------------------------------~~--~i~a~~~~~~~~~~f~ 92 (258)
T cd07199 75 ------------------------------------------------------------RV--LVTAYDLSTGKPVVFS 92 (258)
T ss_pred ------------------------------------------------------------Ce--EEEEEEcCCCCeEEEE
Confidence 22 3344688899999999
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccC----CCceeeecc
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD----DVFRWQDGA 775 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~----~~~~~vDGG 775 (918)
+|..+... ...+.++|+|+|||||+|+||+|+.+ ++..|+|||
T Consensus 93 ~~~~~~~~---------------------------------~~~~~~l~d~~~ASsAaP~~f~p~~i~~~~~~~~~vDGG 139 (258)
T cd07199 93 NYDAEEPD---------------------------------DDDDFKLWDVARATSAAPTYFPPAVIESGGDEGAFVDGG 139 (258)
T ss_pred CCCCcccC---------------------------------CcCCccHHHHHHHHhcchhccCcEEeccCCCeeEEecCc
Confidence 99865310 12267899999999999999999998 889999999
Q ss_pred cccCCcHHHHHHHHHHhC-CCCCCCEEEEECCCCCCCccC---CCCcccccccceeee--eccchhHHHHHHHHHCC-CC
Q 002472 776 IVANNPTIFAIREAQLLW-PDTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE--SACSVDRAEEALSTLLP-ML 848 (918)
Q Consensus 776 l~~NnP~~~al~ea~~~~-~~~~~~~vvSlGTG~~~~~~~---~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~-~~ 848 (918)
+.+|||+..|+.||+..| ++.+..+|||||||..+.... ...|+...|...++. +....+..+.+++.+.+ ..
T Consensus 140 v~~NnP~~~a~~ea~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (258)
T cd07199 140 VAANNPALLALAEALRLLAPDKDDILVLSLGTGTSPSSSSSKKASRWGGLGWGRPLLDILMDAQSDGVDQWLDLLFGSLD 219 (258)
T ss_pred cccCChHHHHHHHHHHhcCCCCCceEEEEecCCCCCCCcCHHHhhccCccccHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 999999999999999965 556677999999999877654 345666667655544 45556666777776642 12
Q ss_pred CCCCeEEeCCCCchh
Q 002472 849 PEIQYYRFNPGSISV 863 (918)
Q Consensus 849 ~~~~YfR~np~~~~~ 863 (918)
.+.+||||||.++..
T Consensus 220 ~~~~y~R~~~~~~~~ 234 (258)
T cd07199 220 SKDNYLRINPPLPGP 234 (258)
T ss_pred CCCeEEEEcCCCCCC
Confidence 378999999998865
No 9
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=9.2e-39 Score=345.62 Aligned_cols=236 Identities=25% Similarity=0.378 Sum_probs=175.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcC-------CCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhcccc
Q 002472 540 LRILSMDGGGMKGLATVQILKEIEKGTG-------KRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVF 612 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~~~vL~~Le~~~~-------~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF 612 (918)
.|||||||||+||+++++||++||+.++ .+++++||+|+|||||||||++++.+ ++++|+.++|.+.+.++|
T Consensus 1 ~rILsLDGGGiRGi~~~gvL~~LE~~l~~~~~~p~~~l~d~FDlIaGTStGgIIAa~la~g-~s~~ei~~~y~~~~~~iF 79 (344)
T cd07217 1 KKILALDGGGIRGLLSVEILGRIEKDLRTHLDDPEFRLGDYFDFVGGTSTGSIIAACIALG-MSVTDLLSFYTLNGVNMF 79 (344)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCccccccccccEEEEecHHHHHHHHHHcC-CCHHHHHHHHHhhhhhhc
Confidence 4799999999999999999999999764 25799999999999999999999865 999999999999999999
Q ss_pred CCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCC
Q 002472 613 AEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP 692 (918)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~ 692 (918)
..+.. ...+ + .....+.|+.+.++++++++|+ +..+.+... .+.++++ ++|..+
T Consensus 80 ~~~~~--------~~~l---~--------~~~~~~~y~~~~L~~~L~~~fg----~~~l~d~~~-~~~l~i~--a~dl~t 133 (344)
T cd07217 80 DKAWL--------AQRL---F--------LNKLYNQYDPTNLGKKLNTVFP----ETTLGDDTL-RTLLMIV--TRNATT 133 (344)
T ss_pred Cchhh--------hhhc---c--------ccccccccCcHHHHHHHHHHcC----ceeeccccc-CceEEEE--EEecCC
Confidence 76321 1000 0 0001246999999999999994 344443211 1334444 468899
Q ss_pred CcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCC-----
Q 002472 693 AQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD----- 767 (918)
Q Consensus 693 ~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~----- 767 (918)
++|++|+|+........ .......+.++|||+|||||||+||+|+.+.
T Consensus 134 g~p~~f~~~~~~~~~~~---------------------------~~~~~~~~~~L~da~rASsAaPt~FpP~~i~~~~~~ 186 (344)
T cd07217 134 GSPWPVCNNPEAKYNDS---------------------------DRSDCNLDLPLWQLVRASTAAPTFFPPEVVSIAPGT 186 (344)
T ss_pred CCeeEeecCchhhcccc---------------------------cccCcccCCcHHHHHHHHccCccccCceEEEecCCc
Confidence 99999998642110000 0000012678999999999999999997652
Q ss_pred Cceeeecccc-cCCcHHHHHHHHHHh-----CCC-CCCCEEEEECCCCCCCccC---CCCcccccccceeee
Q 002472 768 VFRWQDGAIV-ANNPTIFAIREAQLL-----WPD-TRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE 829 (918)
Q Consensus 768 ~~~~vDGGl~-~NnP~~~al~ea~~~-----~~~-~~~~~vvSlGTG~~~~~~~---~~~~~~~~~~~~l~~ 829 (918)
+..|||||+. +|||+..|+.||... |+. ....+|||||||..+.... ...|+...|..++++
T Consensus 187 ~~~lVDGGv~aaNNP~l~A~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~~g~~~w~~~l~~ 258 (344)
T cd07217 187 AFVFVDGGVTTYNNPAFQAFLMATAKPYKLNWEVGADNLLLVSVGTGFAPEARPDLKAADMWALDHAKYIPS 258 (344)
T ss_pred eEEEECCccccccCHHHHHHHHHHHhhhcccCCCCCCcEEEEEECCCCCCCCCccccccccChhhhHHHHHH
Confidence 3579999998 699999999998643 653 2344899999999876643 467899999877766
No 10
>COG3621 Patatin [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=261.19 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=148.7
Q ss_pred CcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCC
Q 002472 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~ 617 (918)
.++|||+|||||+||.+++.+++.||+..|++.+++||+|+|||+|||+|++|+.+ .+..|..+.|.+-..++|.....
T Consensus 7 sk~rIlsldGGGvrG~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~-ks~~e~~qlF~~q~~q~f~ee~~ 85 (394)
T COG3621 7 SKYRILSLDGGGVRGAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALG-KSPRELKQLFSAQQAQIFPEEMK 85 (394)
T ss_pred cceeEEEecCCccccHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcC-CCCchHHHHHHHhhhhhccHhhc
Confidence 36999999999999999999999999999999999999999999999999999987 59999999999988888865321
Q ss_pred C-CchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCc-c
Q 002472 618 K-DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ-P 695 (918)
Q Consensus 618 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~-~ 695 (918)
. .....++++.+. .-+..++|+.++|-++++.+. ++.++.+... + |+++.++...++ |
T Consensus 86 ~~~fpv~tFrq~l~-----------~a~~~pkys~~pLiK~lk~~~----~D~tlkDL~~---~--Vvv~~~~l~~~knp 145 (394)
T COG3621 86 HRIFPVGTFRQLLS-----------YALFSPKYSPQPLIKLLKFVC----KDYTLKDLIG---R--VVVPGYDLNNQKNP 145 (394)
T ss_pred cCCCcchhHhhhhh-----------hhhcCCcCCchhHHHHHHHhc----cccchhhhcc---c--eEEEeeecccccCC
Confidence 1 111112333222 224689999999999999777 4455555432 2 333446777776 5
Q ss_pred eEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCC------c
Q 002472 696 FIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDV------F 769 (918)
Q Consensus 696 ~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~------~ 769 (918)
..|.+-.++... .+.+..+||++.||+|||+||||+...+ .
T Consensus 146 ~~t~~~~~~~~~---------------------------------ry~~~~LsDii~~stAAPtyFp~h~~~~i~~~k~~ 192 (394)
T COG3621 146 LFTFSTHHARPS---------------------------------RYNNYKLSDIILASTAAPTYFPPHHFENITNTKYH 192 (394)
T ss_pred ceeecccCcccc---------------------------------ccccchHHHHHHhcccCCcccCcccccccccccce
Confidence 555543322111 1237789999999999999999986532 3
Q ss_pred eeeecccccCCcHHH---HHHHH
Q 002472 770 RWQDGAIVANNPTIF---AIREA 789 (918)
Q Consensus 770 ~~vDGGl~~NnP~~~---al~ea 789 (918)
.|+|||+.+|||+.. |+.++
T Consensus 193 ~~iDGGv~ANnPsla~~~al~~~ 215 (394)
T COG3621 193 PIIDGGVVANNPSLATWQALGLN 215 (394)
T ss_pred eeecceeeecChhHHHHHHhhhh
Confidence 599999999999976 55554
No 11
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=99.95 E-value=1.3e-27 Score=242.73 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=134.9
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||+||++++|||++|+| ....||+|+|||+||++|++++.+ ++.+++.+.|..+..+.|......
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e-----~~~~~d~i~GtSaGai~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEE-----AGILKKRVAGTSAGAITAALLALG-YSAADIKDILKETDFAKLLDSPVG---- 71 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHH-----cCCCcceEEEECHHHHHHHHHHcC-CCHHHHHHHHHhCCHHHHhccchh----
Confidence 8999999999999999999998 345579999999999999999976 899999999998876666432110
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCc----hhcccc-CCCCEEEEEEeeeccCCCcceE
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDL----LIESSV-KNIPKVFTVSTLVNVMPAQPFI 697 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~----~~~~~~-~~~~~~~v~~t~~~~~~~~~~~ 697 (918)
....+..++ ..++.|+.+.+++.+++.++....+. .+.+.. ...+++.|++ +|..++++++
T Consensus 72 --~~~~~~~~~----------~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~I~a--td~~tg~~~~ 137 (194)
T cd07207 72 --LLFLLPSLF----------KEGGLYKGDALEEWLRELLKEKTGNSFATSLLRDLDDDLGKDLKVVA--TDLTTGALVV 137 (194)
T ss_pred --hhHHHHHHH----------hhcCCccHHHHHHHHHHHHHhccCCcccchhhhhhccccCCcEEEEE--EECCCCCEEE
Confidence 001111111 23678999999999999985432110 011222 2334555554 5888999999
Q ss_pred eccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCC-Cceeeeccc
Q 002472 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD-VFRWQDGAI 776 (918)
Q Consensus 698 f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~-~~~~vDGGl 776 (918)
|+..+.+ +..+|+|+|||||+|++|+|++++ ++.|+|||+
T Consensus 138 f~~~~~~---------------------------------------~~~l~~av~AS~AiP~~f~pv~i~~g~~~vDGG~ 178 (194)
T cd07207 138 FSAETTP---------------------------------------DMPVAKAVRASMSIPFVFKPVRLAKGDVYVDGGV 178 (194)
T ss_pred ecCCCCC---------------------------------------cccHHHHHHHHcCCCcccccEEeCCCeEEEeCcc
Confidence 9754322 457999999999999999999999 999999999
Q ss_pred ccCCcHHH
Q 002472 777 VANNPTIF 784 (918)
Q Consensus 777 ~~NnP~~~ 784 (918)
.+|+|+..
T Consensus 179 ~~n~Pv~~ 186 (194)
T cd07207 179 LDNYPVWL 186 (194)
T ss_pred ccCCCchh
Confidence 99999973
No 12
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=99.95 E-value=2.1e-27 Score=236.49 Aligned_cols=163 Identities=26% Similarity=0.319 Sum_probs=130.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~ 621 (918)
.|+|+|||+||++++|||++|+++ ...||+|+|||+||++|++++.+ ++.+++.+.|.+.....+....
T Consensus 2 ~Lvl~GGG~rG~~~~Gvl~~L~~~-----~~~~d~i~GtSaGal~a~~~a~g-~~~~~~~~~~~~~~~~~~~~~~----- 70 (175)
T cd07205 2 GLALSGGGARGLAHIGVLKALEEA-----GIPIDIVSGTSAGAIVGALYAAG-YSPEEIEERAKLRSTDLKALSD----- 70 (175)
T ss_pred eEEEeChhHHHHHHHHHHHHHHHc-----CCCeeEEEEECHHHHHHHHHHcC-CCHHHHHHHHHhhccchhhhhc-----
Confidence 599999999999999999999983 44699999999999999999866 8999999998765444332110
Q ss_pred hhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccC
Q 002472 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (918)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny 701 (918)
| .....+.|+.+.+++.+++.++ ...+++.. .++.+++ ++..++++++|++
T Consensus 71 ---~----------------~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~---~~l~i~a--~~l~~g~~~~f~~- 121 (175)
T cd07205 71 ---L----------------TIPTAGLLRGDKFLELLDEYFG----DRDIEDLW---IPFFIVA--TDLTSGKLVVFRS- 121 (175)
T ss_pred ---c----------------ccccccccChHHHHHHHHHHcC----CCcHHHCC---CCEEEEE--EECCCCCEEEEcC-
Confidence 0 0123567899999999999984 34455443 2344444 5888999999863
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCCc
Q 002472 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (918)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~NnP 781 (918)
..+|+|++||||+|+||+|++++++.|+|||+.+|+|
T Consensus 122 -------------------------------------------~~l~~av~AS~a~P~~f~pv~~~g~~~~DGG~~~n~P 158 (175)
T cd07205 122 -------------------------------------------GSLVRAVRASMSIPGIFPPVKIDGQLLVDGGVLNNLP 158 (175)
T ss_pred -------------------------------------------CCHHHHHHHHcccccccCCEEECCEEEEeccCcCCcc
Confidence 2389999999999999999999999999999999999
Q ss_pred HHHHHH
Q 002472 782 TIFAIR 787 (918)
Q Consensus 782 ~~~al~ 787 (918)
+..|++
T Consensus 159 ~~~a~~ 164 (175)
T cd07205 159 VDVLRE 164 (175)
T ss_pred HHHHHH
Confidence 998875
No 13
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.94 E-value=1.2e-26 Score=237.32 Aligned_cols=178 Identities=18% Similarity=0.144 Sum_probs=137.7
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~ 621 (918)
.|+|+|||+||++++|||++|+|. ...+|.|+|||+||++|++++.+ ++.+++.+.|.+.....|-.
T Consensus 2 ~LvL~GGG~rG~~~~GvL~aL~e~-----gi~~~~i~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~~~------- 68 (221)
T cd07210 2 ALVLSSGFFGFYAHLGFLAALLEM-----GLEPSAISGTSAGALVGGLFASG-ISPDEMAELLLSLERKDFWM------- 68 (221)
T ss_pred eEEEcChHHHHHHHHHHHHHHHHc-----CCCceEEEEeCHHHHHHHHHHcC-CCHHHHHHHHHhcCHHHHhh-------
Confidence 599999999999999999999993 34589999999999999999976 89999999887664332210
Q ss_pred hhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccC
Q 002472 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (918)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny 701 (918)
........+.|+.+.+++.+++.++. ..+++.. .++.+++ +|..++++++|++.
T Consensus 69 -----------------~~~~~~~~g~~~~~~l~~~l~~~l~~----~~~~~~~---~~l~i~a--tdl~tg~~~~f~~~ 122 (221)
T cd07210 69 -----------------FWDPPLRGGLLSGDRFAALLREHLPP----DRFEELR---IPLAVSV--VDLTSRETLLLSEG 122 (221)
T ss_pred -----------------hccccCCccccChHHHHHHHHHHcCC----CCHHHCC---CCeEEEE--EECCCCCEEEECCC
Confidence 00112346788999999999999843 3444432 2344444 57889999999742
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCCc
Q 002472 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (918)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~NnP 781 (918)
.+++|++||||+|++|+|+.++++.|+|||+.+|+|
T Consensus 123 --------------------------------------------~l~~av~AS~aiP~~f~Pv~i~g~~~vDGGv~~n~P 158 (221)
T cd07210 123 --------------------------------------------DLAEAVAASCAVPPLFQPVEIGGRPFVDGGVADRLP 158 (221)
T ss_pred --------------------------------------------CHHHHHHHHcccccccCCEEECCEEEEecccccccc
Confidence 389999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCC
Q 002472 782 TIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (918)
Q Consensus 782 ~~~al~ea~~~~~~~~~~~vvSlGTG~~ 809 (918)
+..|+ ++.+.+ ++|+++++..
T Consensus 159 i~~~~------~~~~~i-i~v~~~~~~~ 179 (221)
T cd07210 159 FDALR------PEIERI-LYHHVAPRRP 179 (221)
T ss_pred HHHHh------cCCCEE-EEEECCCCCC
Confidence 99877 222222 5677777654
No 14
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=99.94 E-value=3.8e-26 Score=244.09 Aligned_cols=186 Identities=21% Similarity=0.322 Sum_probs=141.2
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 002472 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~ 619 (918)
...|+|+|||+||++|+|||++||| .+..||+|+|||+||++|++++.+ ++.+++.+...++... +
T Consensus 15 ~~gLvL~GGG~RG~ahiGvL~aLee-----~gi~~d~v~GtSaGAi~ga~ya~g-~~~~~~~~~~~~~~~~-~------- 80 (306)
T cd07225 15 SIALVLGGGGARGCAHIGVIKALEE-----AGIPVDMVGGTSIGAFIGALYAEE-RNISRMKQRAREWAKD-M------- 80 (306)
T ss_pred CEEEEECChHHHHHHHHHHHHHHHH-----cCCCCCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHH-h-------
Confidence 4679999999999999999999999 456799999999999999999976 7988888877654321 0
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
..|... ++. + .+...+.|+.+.+++.++++++ +..+++...+ +.+++ +|..++++++|+
T Consensus 81 ---~~~~~~---~~~-----~-~~~~~~~~~~~~~~~~l~~~~~----~~~~edl~~p---~~~va--tdl~tg~~~~~~ 139 (306)
T cd07225 81 ---TSIWKK---LLD-----L-TYPITSMFSGAAFNRSIHSIFG----DKQIEDLWLP---YFTIT--TDITASAMRVHT 139 (306)
T ss_pred ---HHHHHH---Hhc-----c-cccccccCChHHHHHHHHHHhC----CCCHHHcCCC---eEEEe--eecCCCCEEEec
Confidence 011111 111 0 0123567999999999999994 4556654433 23333 589999999986
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCc--cCCCceeeecccc
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDF--SDDVFRWQDGAIV 777 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~--~~~~~~~vDGGl~ 777 (918)
. ..+++|+|||||+|++|+|+ .+++..|+|||+.
T Consensus 140 ~--------------------------------------------g~l~~avrAS~siP~~f~Pv~~~~~g~~~vDGGv~ 175 (306)
T cd07225 140 D--------------------------------------------GSLWRYVRASMSLSGYLPPLCDPKDGHLLMDGGYI 175 (306)
T ss_pred C--------------------------------------------CCHHHHHHHHhcCCeeccceEeCCCCeEEEecccc
Confidence 3 24999999999999999998 4799999999999
Q ss_pred cCCcHHHHHHHHHHhCCCCCCCEEEEECCCCCC
Q 002472 778 ANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVP 810 (918)
Q Consensus 778 ~NnP~~~al~ea~~~~~~~~~~~vvSlGTG~~~ 810 (918)
+|+|+..|+. .+..++ ++|++||+...
T Consensus 176 ~n~Pv~~a~~-----~g~~~i-i~V~v~~~~~~ 202 (306)
T cd07225 176 NNLPADVARS-----MGAKTV-IAIDVGSQDET 202 (306)
T ss_pred CcchHHHHHH-----CCcCEE-EEEECCCCccc
Confidence 9999999864 223333 67888998654
No 15
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=99.94 E-value=6.7e-26 Score=224.95 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=123.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh-ccccCCCCCCCc
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEPFPKDN 620 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~-~~iF~~~~~~~~ 620 (918)
.|+|+|||+||++++|||++|+|. ...||+|+|||+||++|++++.+ ++.+++.... ++. .+++.
T Consensus 2 ~LvL~GGG~rG~~~~Gvl~~L~e~-----g~~~d~i~GtSaGAi~aa~~a~g-~~~~~~~~~~-~~~~~~~~~------- 67 (175)
T cd07228 2 GLALGSGGARGWAHIGVLRALEEE-----GIEIDIIAGSSIGALVGALYAAG-HLDALEEWVR-SLSQRDVLR------- 67 (175)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHC-----CCCeeEEEEeCHHHHHHHHHHcC-CCHHHHHHHH-hhhHHHHHh-------
Confidence 599999999999999999999983 34699999999999999999976 6777664432 111 11110
Q ss_pred hhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEecc
Q 002472 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (918)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~n 700 (918)
.+.. .....+.++.+.+++.+++.++ +..+++.. .++.+++ +|..++++++|++
T Consensus 68 -----------~~~~------~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~---~~l~i~a--t~~~tg~~~~f~~ 121 (175)
T cd07228 68 -----------LLDL------SASRSGLLKGEKVLEYLREIMG----GVTIEELP---IPFAAVA--TDLQTGKEVWFRE 121 (175)
T ss_pred -----------hccc------CCCcccccCHHHHHHHHHHHcC----CCCHHHCC---CCEEEEE--EECCCCCEEEECC
Confidence 0000 0123567889999999999984 33455443 2344544 4888999999973
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCC
Q 002472 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (918)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~Nn 780 (918)
. .+++|++||||+|++|+|++++++.|+|||+.+|.
T Consensus 122 ~--------------------------------------------~l~~av~AS~a~P~~f~p~~~~g~~~vDGG~~~~~ 157 (175)
T cd07228 122 G--------------------------------------------SLIDAIRASISIPGIFAPVEHNGRLLVDGGVVNPI 157 (175)
T ss_pred C--------------------------------------------CHHHHHHHHcccCccccCEEECCEEEEeccCcCCC
Confidence 2 38999999999999999999999999999999999
Q ss_pred cHHHHHH
Q 002472 781 PTIFAIR 787 (918)
Q Consensus 781 P~~~al~ 787 (918)
|+..|++
T Consensus 158 P~~~a~~ 164 (175)
T cd07228 158 PVSVARA 164 (175)
T ss_pred cHHHHHH
Confidence 9988765
No 16
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.93 E-value=4.5e-25 Score=226.05 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=126.6
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCC--HHHHHHHHHHhhccccCCCCCCCc
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMT--LDQCEEIYKNLGKLVFAEPFPKDN 620 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s--~~~~~~~y~~~~~~iF~~~~~~~~ 620 (918)
|+|+|||+||+|++|||++|+| ....||+|+|||+||++|++++.+ .+ .+++.++|.++...-|
T Consensus 1 LvL~GGG~rG~~~~Gvl~aL~e-----~g~~~d~i~GtS~GAl~aa~~a~~-~~~~~~~l~~~~~~~~~~~~-------- 66 (215)
T cd07209 1 LVLSGGGALGAYQAGVLKALAE-----AGIEPDIISGTSIGAINGALIAGG-DPEAVERLEKLWRELSREDV-------- 66 (215)
T ss_pred CEecccHHHHHHHHHHHHHHHH-----cCCCCCEEEEECHHHHHHHHHHcC-CcHHHHHHHHHHHhCChhhH--------
Confidence 6899999999999999999999 345799999999999999999976 56 7888888876543111
Q ss_pred hhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEecc
Q 002472 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (918)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~n 700 (918)
.++.++++.+. ...+.+.....+++.+++ ++..++++++|++
T Consensus 67 --------------------------------~l~~~~~~~~~----~~~~~~~~~~~~~l~i~a--t~~~tg~~~~f~~ 108 (215)
T cd07209 67 --------------------------------FLRGLLDRALD----FDTLRLLAILFAGLVIVA--VNVLTGEPVYFDD 108 (215)
T ss_pred --------------------------------HHHHHHHHhCC----HHHHhhccccCceEEEEE--EEcCCCCEEEEeC
Confidence 03344444431 112222111113444444 5889999999996
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCC
Q 002472 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (918)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~Nn 780 (918)
.. ...+++|++||||+|++|+|+++++..|+|||+.+|+
T Consensus 109 ~~-----------------------------------------~~~~~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~n~ 147 (215)
T cd07209 109 IP-----------------------------------------DGILPEHLLASAALPPFFPPVEIDGRYYWDGGVVDNT 147 (215)
T ss_pred CC-----------------------------------------cchHHHHHHHhccccccCCCEEECCeEEEcCccccCc
Confidence 54 2358999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCCEEEEECCCCCCC
Q 002472 781 PTIFAIREAQLLWPDTRIDCLVSIGCGSVPT 811 (918)
Q Consensus 781 P~~~al~ea~~~~~~~~~~~vvSlGTG~~~~ 811 (918)
|+..|+.. +.+++ +||+++++....
T Consensus 148 Pv~~a~~~-----g~~~i-ivv~~~~~~~~~ 172 (215)
T cd07209 148 PLSPAIDL-----GADEI-IVVSLSDKGRDD 172 (215)
T ss_pred CHHHHHhc-----CCCEE-EEEECCCccccc
Confidence 99998872 22333 577777776543
No 17
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=99.92 E-value=2.1e-24 Score=239.64 Aligned_cols=217 Identities=20% Similarity=0.325 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHhccch--HHH--HHhh--cCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeec
Q 002472 507 PRVNKAAARALAILGENE--SLR--RAIR--GRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGT 580 (918)
Q Consensus 507 ~~i~~~a~~al~~l~~~~--~~~--~~~~--~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GT 580 (918)
+++..|.+.+|..+.+.+ .+. .+.. .+.....|..+|+|+|||+||++|+|||++|+| -...+|+|+||
T Consensus 34 e~Yi~ev~~~l~~l~~~~~~~~~~~~kl~ff~~~~~~~GrtALvLsGGG~rG~~hiGVLkaL~E-----~gl~p~vIsGT 108 (421)
T cd07230 34 ERYITEALLTLEYLVDDDEDGLEDRYLLGMLLQTRKNFGRTALLLSGGGTFGMFHIGVLKALFE-----ANLLPRIISGS 108 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHH-----cCCCCCEEEEE
Confidence 577888888888886332 111 1111 133346789999999999999999999999988 45568999999
Q ss_pred ChHHHHHHHHHcCCCCHHHHHHHHHHhhc---cccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHH
Q 002472 581 STGGMLAIALAVKLMTLDQCEEIYKNLGK---LVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERL 657 (918)
Q Consensus 581 S~Gaiia~~l~~~~~s~~~~~~~y~~~~~---~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 657 (918)
|+||++|++++. .+.+|+.+++..+.. .+|...... ..+...+.+++ ..++.||.+.+++.
T Consensus 109 SaGAivAal~as--~~~eel~~~l~~~~~~~~~~f~~~~~~----~~~~~~~~~l~----------~~g~~~d~~~l~~~ 172 (421)
T cd07230 109 SAGSIVAAILCT--HTDEEIPELLEEFPYGDFNVFEDPDQE----ENVLQKLSRFL----------KYGSWFDISHLTRV 172 (421)
T ss_pred CHHHHHHHHHHc--CCHHHHHHHHHhcchHHHHHHhccccc----chHHHHHHHHH----------hcCCCcCHHHHHHH
Confidence 999999999987 478999888876432 244332111 12333333333 24578999999999
Q ss_pred HHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccc
Q 002472 658 LKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRS 737 (918)
Q Consensus 658 l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (918)
+++.+ ++.+|++++.+..+.+.++++.......|.++...+.|
T Consensus 173 l~~~l----gd~tF~Eay~rt~r~L~I~vt~~~~~~~p~llny~t~p--------------------------------- 215 (421)
T cd07230 173 MRGFL----GDLTFQEAYNRTRRILNITVSPASIYELPRLLNYITAP--------------------------------- 215 (421)
T ss_pred HHHHh----CCCCHHHHHHhhCCeEEEEEEeccccCCCeeeeeccCC---------------------------------
Confidence 99999 67788888777666554444332333456665543332
Q ss_pred cccCCCchhHHHHHHhhccCCCCCCCccC---------------CCceeeecccccCCcHHHHHH
Q 002472 738 AFIGSCKHQVWQAIRASSAAPYYLDDFSD---------------DVFRWQDGAIVANNPTIFAIR 787 (918)
Q Consensus 738 ~~~~~~~~~l~~a~rASsAaP~~F~p~~~---------------~~~~~vDGGl~~NnP~~~al~ 787 (918)
++.+|+|++||||+|++|+|+++ ++..|+|||+.+|.|+..+.+
T Consensus 216 ------~v~I~~AV~AS~AlP~vf~pv~l~~Kd~~~g~i~p~~~~g~~~vDGgv~~~iPi~~l~e 274 (421)
T cd07230 216 ------NVLIWSAVCASCSVPGVFPSSPLYEKDPKTGEIVPWNPSSVKWIDGSVDNDLPMTRLSE 274 (421)
T ss_pred ------CcHHHHHHHHhcCchhhcCCeEEEeecCCCCceecccCCCCceeCCCccccChHHHHHH
Confidence 67799999999999999999876 267899999999999987544
No 18
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=99.91 E-value=4.3e-24 Score=222.65 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=129.6
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 002472 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~ 619 (918)
...|+|+|||+||++|+|||++||| .+..||+|+|||+||++|++++.+ ++++++.+...++..+.+
T Consensus 10 ~igLVL~GGGaRG~ahiGVL~aLeE-----~gi~~d~v~GtSaGAiiga~ya~g-~~~~~~~~r~~~~~~~~~------- 76 (269)
T cd07227 10 AIGLVLGGGGARGISHIGILQALEE-----AGIPIDAIGGTSIGSFVGGLYARE-ADLVPIFGRAKKFAGRMA------- 76 (269)
T ss_pred CEEEEECCcHHHHHHHHHHHHHHHH-----cCCCccEEEEECHHHHHHHHHHcC-CchHHHHHHHHHHHHHHh-------
Confidence 4679999999999999999999999 556699999999999999999976 788877654433222111
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
..|....+..+ ...+.+....+.+.+.+.++ +..+++... ..++++ +|..++++.+|+
T Consensus 77 ---~~~~~l~d~~~----------p~~~~~~g~~~~~~l~~~~~----~~~iedl~~---pf~~~a--Tdl~tg~~~~~~ 134 (269)
T cd07227 77 ---SMWRFLSDVTY----------PFASYTTGHEFNRGIWKTFG----NTHIEDFWI---PFYANS--TNITHSRMEIHS 134 (269)
T ss_pred ---HHHHHHhhccc----------ccccccchhHHHHHHHHHcC----cCCHHHCCC---CEEEEE--EECCCCCEEEec
Confidence 01111111000 01122334455666777774 345555432 233444 589999999987
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccC
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~N 779 (918)
+ ..+|+|+|||||+|++|+|+.+++..|+|||+.+|
T Consensus 135 ~--------------------------------------------g~l~~avrAS~slPg~~pPv~~~G~~~vDGGv~dn 170 (269)
T cd07227 135 S--------------------------------------------GYAWRYIRASMSLAGLLPPLSDNGSMLLDGGYMDN 170 (269)
T ss_pred C--------------------------------------------CCHHHHHHHHccchhcCCCEEECCEEEEcccCCcc
Confidence 3 23999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCCC
Q 002472 780 NPTIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (918)
Q Consensus 780 nP~~~al~ea~~~~~~~~~~~vvSlGTG~~ 809 (918)
.|+..+.+. ..+++ ++|.+|++..
T Consensus 171 lPv~~~~~~-----G~~~i-i~V~v~~~~~ 194 (269)
T cd07227 171 LPVSPMRSL-----GIRDI-FAVDVGSVDD 194 (269)
T ss_pred HhHHHHHHc-----CCCEE-EEEECCCcCC
Confidence 999776432 22233 5788886643
No 19
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.91 E-value=1.4e-23 Score=231.90 Aligned_cols=215 Identities=18% Similarity=0.233 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHHHhccchHHHHH----hhcCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecCh
Q 002472 507 PRVNKAAARALAILGENESLRRA----IRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTST 582 (918)
Q Consensus 507 ~~i~~~a~~al~~l~~~~~~~~~----~~~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~ 582 (918)
+++..|.+.+|..+.+.+.+..+ .-.+.....|..+|+|+|||+||++|+||+++|+| ....||+|+|||+
T Consensus 30 e~yi~ev~~~l~~l~~~~~~~~~~k~~ff~~~~~~~grtALvLsGGG~rG~~h~GVlkaL~e-----~gllp~iI~GtSA 104 (407)
T cd07232 30 EEYIDEVEACLKYLRESSQLDLEEKRRLFKRLSTNYGRTALCLSGGAAFAYYHFGVVKALLD-----ADLLPNVISGTSG 104 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHHHHh-----CCCCCCEEEEECH
Confidence 46677888888888655422111 11123345678899999999999999999999999 4567999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHH-HHHH
Q 002472 583 GGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERL-LKEM 661 (918)
Q Consensus 583 Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~-l~~~ 661 (918)
||++|++++.+ +.+|+.+.+.......|.... ..|...+.+++ ..+..+|.+.+++. ++..
T Consensus 105 GAivaalla~~--t~~el~~~~~~~~~~~~~~~~------~~~~~~~~~~l----------~~G~~~d~~~l~~~~~~~~ 166 (407)
T cd07232 105 GSLVAALLCTR--TDEELKQLLVPELARKITACE------PPWLVWIPRWL----------KTGARFDSVEWARTCCWFT 166 (407)
T ss_pred HHHHHHHHHcC--CHHHHHHHHhhhhhhhhhhcc------chHHHHHHHHH----------hcCCCCCHHHHHHHHHHHh
Confidence 99999999973 778887776642222221100 11222222222 23567899999888 7778
Q ss_pred hcCCCCCchhccccCCCCEE-EEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCcccccccccc
Q 002472 662 CADEDGDLLIESSVKNIPKV-FTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFI 740 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~-~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (918)
+ ++.++++++...++. .++++. ..++++..|.||-..+
T Consensus 167 ~----gd~TFeEa~~~tgr~l~I~vt~--~d~~~~~~lln~~tsp----------------------------------- 205 (407)
T cd07232 167 R----GSMTFEEAYERTGRILNISVVP--ADPHSPTILLNYLTSP----------------------------------- 205 (407)
T ss_pred c----CCCCHHHHHHhcCCEEEEEEEE--CCCCCceEEeccCCCC-----------------------------------
Confidence 8 667788877665553 344443 3466666666664221
Q ss_pred CCCchhHHHHHHhhccCCCCCCCccC--------------CCceeeecccccCCcHHHHHHH
Q 002472 741 GSCKHQVWQAIRASSAAPYYLDDFSD--------------DVFRWQDGAIVANNPTIFAIRE 788 (918)
Q Consensus 741 ~~~~~~l~~a~rASsAaP~~F~p~~~--------------~~~~~vDGGl~~NnP~~~al~e 788 (918)
++.+|+|++||||+|++|+|+++ ++..|+|||+.+|.|+..+.+.
T Consensus 206 ---~v~I~sAV~AS~svPgvf~pv~l~~k~~~g~~~~~~~~g~~~~DGgv~~diP~~~l~el 264 (407)
T cd07232 206 ---NCTIWSAVLASAAVPGILNPVVLMMKDPDGTLIPPFSFGSKWKDGSLRTDIPLKALNTL 264 (407)
T ss_pred ---ccHHHHHHhcccCccccccCeEEEeecCCCCcccccCCCCceecCCcCcccHHHHHHHH
Confidence 67899999999999999999876 6778999999999999775543
No 20
>PRK10279 hypothetical protein; Provisional
Probab=99.89 E-value=7.1e-23 Score=217.37 Aligned_cols=165 Identities=19% Similarity=0.309 Sum_probs=123.3
Q ss_pred ceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 002472 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~ 619 (918)
...|+|.|||+||++|+|||++|+| .+..||+|+|||+||++|++++.+. .+++.+.+..+. |..
T Consensus 5 ~igLvL~GGGarG~ahiGVL~aL~E-----~gi~~d~i~GtS~GAlvga~yA~g~--~~~l~~~~~~~~---~~~----- 69 (300)
T PRK10279 5 KIGLALGSGAARGWSHIGVINALKK-----VGIEIDIVAGCSIGSLVGAAYACDR--LSALEDWVTSFS---YWD----- 69 (300)
T ss_pred cEEEEEcCcHHHHHHHHHHHHHHHH-----cCCCcCEEEEEcHHHHHHHHHHcCC--hHHHHHHHhccc---hhh-----
Confidence 4579999999999999999999999 5567999999999999999999773 455554433221 000
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
+.. ++. + .+...+.++.+.+++.+++.++ ...+++... .+.+++ +|..++++++|+
T Consensus 70 -----~~~----~~d-----~-~~~~~gl~~~~~~~~~l~~~~~----~~~~e~l~~---~~~ivA--tdl~tg~~v~~~ 125 (300)
T PRK10279 70 -----VLR----LMD-----L-SWQRGGLLRGERVFNQYREIMP----ETEIENCSR---RFGAVA--TNLSTGRELWFT 125 (300)
T ss_pred -----hhh----hhc-----c-CCCcCcccCcHHHHHHHHHHcC----hhhHHhCCC---CEEEEE--EECCCCCEEEec
Confidence 000 000 0 0112467888999999998884 344444322 234444 589999999997
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccC
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~N 779 (918)
. ..+++|+|||||+|++|+|+.+++..|+|||+.+|
T Consensus 126 ~--------------------------------------------g~l~~avrAS~aiP~vf~Pv~~~g~~~vDGGv~~~ 161 (300)
T PRK10279 126 E--------------------------------------------GDLHLAIRASCSMPGLMAPVAHNGYWLVDGAVVNP 161 (300)
T ss_pred C--------------------------------------------CCHHHHHHHhcccccCCCCEEECCEEEEECccCcc
Confidence 3 23889999999999999999999999999999999
Q ss_pred CcHHHHHH
Q 002472 780 NPTIFAIR 787 (918)
Q Consensus 780 nP~~~al~ 787 (918)
.|+..|..
T Consensus 162 ~Pv~~a~~ 169 (300)
T PRK10279 162 VPVSLTRA 169 (300)
T ss_pred ccHHHHHH
Confidence 99987654
No 21
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.89 E-value=9.7e-23 Score=217.17 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=117.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCcc-ccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh-ccccCCCCCCCc
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHE-LFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEPFPKDN 620 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~-~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~-~~iF~~~~~~~~ 620 (918)
|+|+|||+||++++|||++|+|. .. .||+|+|||+||++|++++.+ .+.++ .+.+.+.. ...|.
T Consensus 1 Lvl~GGG~rG~~~~Gvl~al~e~-----~~~~fd~i~GtSaGAi~a~~~~~g-~~~~~-~~~~~~~~~~~~~~------- 66 (266)
T cd07208 1 LVLEGGGMRGAYTAGVLDAFLEA-----GIRPFDLVIGVSAGALNAASYLSG-QRGRA-LRINTKYATDPRYL------- 66 (266)
T ss_pred CeeccchhhHHHHHHHHHHHHHc-----CCCCCCEEEEECHHHHhHHHHHhC-CcchH-HHHHHHhcCCCCcc-------
Confidence 79999999999999999999993 33 499999999999999999876 44443 33443322 11111
Q ss_pred hhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEecc
Q 002472 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (918)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~n 700 (918)
.|. ++ +..++.++.+.+.+.+.... ....++.......++.+++ ++..++++.+|++
T Consensus 67 ---~~~----~~----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~a--t~~~~g~~~~~~~ 123 (266)
T cd07208 67 ---GLR----SL----------LRTGNLFDLDFLYDELPDGL----DPFDFEAFAASPARFYVVA--TDADTGEAVYFDK 123 (266)
T ss_pred ---CHH----HH----------hcCCCeecHHHHHhhccCcc----CCcCHHHHHhCCCcEEEEE--EECCCCCEEEEeC
Confidence 111 11 12345567666665553111 1122222222223444444 5889999999987
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccccCC
Q 002472 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (918)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~Nn 780 (918)
... +..+++|++||||+|++|+|+.++++.|+|||+.+|+
T Consensus 124 ~~~----------------------------------------~~~l~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~~~ 163 (266)
T cd07208 124 PDI----------------------------------------LDDLLDALRASSALPGLFPPVRIDGEPYVDGGLSDSI 163 (266)
T ss_pred cCc----------------------------------------chHHHHHHHHHhcchhhcCCEEECCEEEEcCccCcch
Confidence 542 2469999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 002472 781 PTIFAIRE 788 (918)
Q Consensus 781 P~~~al~e 788 (918)
|+..|+..
T Consensus 164 P~~~a~~~ 171 (266)
T cd07208 164 PVDKAIED 171 (266)
T ss_pred hHHHHHHc
Confidence 99987753
No 22
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=99.88 E-value=1.1e-22 Score=201.40 Aligned_cols=158 Identities=26% Similarity=0.372 Sum_probs=111.8
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhcc---ccCCCCCCC
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKL---VFAEPFPKD 619 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~---iF~~~~~~~ 619 (918)
|+|+|||+||+||+|||++|+| ....||+|+|||+||++|++++.+ ++.+++..++.++... .|....
T Consensus 1 Lvl~GGG~rG~~~~Gvl~aL~e-----~gi~~d~v~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (172)
T cd07198 1 LVLSGGGALGIYHVGVAKALRE-----RGPLIDIIAGTSAGAIVAALLASG-RDLEEALLLLLRLSREVRLRFDGAF--- 71 (172)
T ss_pred CEECCcHHHHHHHHHHHHHHHH-----cCCCCCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccCCc---
Confidence 7899999999999999999999 344599999999999999999976 7888887776433221 111100
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
...+.+....++..+++.. ...+. ....++.+++| +..++++++|.
T Consensus 72 ------------------------~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~i~at--~l~tg~~~~~~ 117 (172)
T cd07198 72 ------------------------PPTGRLLGILRQPLLSALP-----DDAHE---DASGKLFISLT--RLTDGENVLVS 117 (172)
T ss_pred ------------------------CcccchhHHHHHHHHHhcc-----HhHHH---HCCCCEEEEEE--ECCCCCEEEEe
Confidence 0111122222233333222 11111 22334555554 78899999986
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccC--CCceeeecccc
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAIV 777 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~--~~~~~vDGGl~ 777 (918)
. . + +..+++|++||||+|++|+|+++ ++..|+|||+.
T Consensus 118 ~-~-~---------------------------------------~~~l~~av~AS~aiP~~f~p~~~~~~g~~~vDGGv~ 156 (172)
T cd07198 118 D-T-S---------------------------------------KGELWSAVRASSSIPGYFGPVPLSFRGRRYGDGGLS 156 (172)
T ss_pred C-C-C---------------------------------------cchHHHHHHHHcchhhhcCceeecCCCeEEEeCCcc
Confidence 5 1 1 34699999999999999999999 99999999999
Q ss_pred cCCcHHH
Q 002472 778 ANNPTIF 784 (918)
Q Consensus 778 ~NnP~~~ 784 (918)
+|+|+..
T Consensus 157 ~n~Pv~~ 163 (172)
T cd07198 157 NNLPVAE 163 (172)
T ss_pred cCCCCcc
Confidence 9999976
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.1e-23 Score=227.33 Aligned_cols=259 Identities=19% Similarity=0.205 Sum_probs=167.7
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
..+-++..|+.||||+|++.. .|..+..-+++-.|+||+|+ +..++...|-+|..|-.||||+|++..+|+.+..|.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 445567777777777777765 67777777777777777777 4555555666777777777887777777777777777
Q ss_pred CcEEeccCCCCCCCc-ccccCCcCcceeeccccccc--ccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeC
Q 002472 199 LEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG 275 (918)
Q Consensus 199 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~ 275 (918)
|++|+|++|.+.... ..+..+++|++|.+++.+-+ .+|.++..+.+|+.++||.|.+..+|..+.++++|+.|+|++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 777777777665211 23334455555555555443 566667777777777777777776666677777777777777
Q ss_pred CCCCCCc-CcCCCCCCcEEEccCCCCCCCc-CcchhhhhhcccCCcccccccccc--chhhhhhhhccCCCCc-------
Q 002472 276 NPLEFLP-EILPLLKLRHLSLANIRIVADE-NLRSVNVQIEMENNSYFGASRHKL--SAFFSLIFRFSSCHHP------- 344 (918)
Q Consensus 276 N~l~~l~-~l~~l~~L~~L~L~~N~i~~~~-~l~~l~~~~~l~~l~~l~l~~n~l--~~~~~~l~~l~~l~~~------- 344 (918)
|.|+.+. ....+.+|++|+||.|+++.++ .+.+ |++|+.+++.+|++ .|+|..++.|..|...
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhccchHHHhh------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 7777554 3445667777777777776632 2222 44555555555543 4555555444333211
Q ss_pred -hhhHHHHh-----hhccCCCce-eecccccccCcccEEECcCCcchh
Q 002472 345 -LLASALAK-----IMQDQENRV-VVGKDENAVRQLISMISSDNRHVV 385 (918)
Q Consensus 345 -~l~~~L~~-----ll~l~~N~l-~ip~~~~~L~~L~~L~ls~N~~v~ 385 (918)
..+..+.. -+.++.|.+ .+|..+.-++.|+.|++..|+.+.
T Consensus 329 ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 11222111 146777877 888888889999999999887543
No 24
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.86 E-value=3.6e-21 Score=208.60 Aligned_cols=180 Identities=21% Similarity=0.216 Sum_probs=132.5
Q ss_pred CcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCC
Q 002472 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~ 617 (918)
++...|+|.|||+||++|+|||++|+| .+..||+|+|||+||++|+++|.+ ++.++....-.++........
T Consensus 9 ~~~i~LvL~GGgArG~~hiGVl~aL~e-----~gi~~~~iaGtS~GAiva~l~A~g-~~~~~~~~~~~~l~~~~~~~~-- 80 (306)
T COG1752 9 KLRIGLVLGGGGARGAAHIGVLKALEE-----AGIPIDVIAGTSAGAIVAALYAAG-MDEDELELAAQRLTARWDNAR-- 80 (306)
T ss_pred CceEEEEecCcHHHHHHHHHHHHHHHH-----cCCCccEEEecCHHHHHHHHHHcC-CChhHHHHHHHHHHhhhcccc--
Confidence 345789999999999999999999999 667899999999999999999976 788777666555443322100
Q ss_pred CCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceE
Q 002472 618 KDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFI 697 (918)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~ 697 (918)
.+....+..+.. ....+.+..+.+.+.+++++++... .+++..... + .++++|+.+++.++
T Consensus 81 ------~~~~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~--~--~v~atd~~~g~~~~ 141 (306)
T COG1752 81 ------DLLRLLDLTLPG-------GRPLGLLRGEKLRNLLRELLGDLLF--DFEDLPIPL--L--YVVATDLLTGREVV 141 (306)
T ss_pred ------chhhccchhhhc-------cCccceecHHHHHHHHHHHhccccc--CHHHcCCCc--E--EEEeeEcCCCCEEE
Confidence 000000000100 0023678889999999999944311 566544432 3 33446899999999
Q ss_pred eccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeecccc
Q 002472 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIV 777 (918)
Q Consensus 698 f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~ 777 (918)
|+. ..+|+|+|||||+|++|+|+.+++..|+|||+.
T Consensus 142 ~~~--------------------------------------------g~~~~av~AS~siP~vF~Pv~i~~~~~vDGg~~ 177 (306)
T COG1752 142 FSE--------------------------------------------GSLAEAVRASCSIPGVFPPVEIDGRLLVDGGVL 177 (306)
T ss_pred ecC--------------------------------------------CcHHHHHHHhcccCccCCCEEECCEEEEecCcc
Confidence 873 239999999999999999999999999999999
Q ss_pred cCCcHHHHHHH
Q 002472 778 ANNPTIFAIRE 788 (918)
Q Consensus 778 ~NnP~~~al~e 788 (918)
+|.|+..+.+.
T Consensus 178 ~n~Pv~~~~~~ 188 (306)
T COG1752 178 NNVPVSLLREL 188 (306)
T ss_pred CCccHHHHHHc
Confidence 99999875543
No 25
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=99.85 E-value=4e-21 Score=199.95 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHHhc--cchHHHH--Hhh--cCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeec
Q 002472 507 PRVNKAAARALAILG--ENESLRR--AIR--GRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGT 580 (918)
Q Consensus 507 ~~i~~~a~~al~~l~--~~~~~~~--~~~--~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GT 580 (918)
+++.+|.+.+|..+. +.+.+.. +.. .+.....|...|+|+|||+||++++||+++|++ ....+|+|+||
T Consensus 30 e~y~~ev~~~l~~~~~~~~~~~~~~~k~~ff~~~r~~~g~~aLvlsGGg~~g~~h~Gvl~aL~e-----~~l~~~~i~Gt 104 (298)
T cd07206 30 EDYIEEVDLSLEYLALLDTKELSVEEKLDFFRRARHAFGRTALMLSGGASLGLFHLGVVKALWE-----QDLLPRVISGS 104 (298)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHH-----cCCCCCEEEEE
Confidence 467788888888763 2222111 111 122334578899999999999999999999998 44568999999
Q ss_pred ChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHH
Q 002472 581 STGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKE 660 (918)
Q Consensus 581 S~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 660 (918)
|+||++|++++.+ +.+|+ +
T Consensus 105 SaGAi~aa~~~~~--~~~El-----------~------------------------------------------------ 123 (298)
T cd07206 105 SAGAIVAALLGTH--TDEEL-----------I------------------------------------------------ 123 (298)
T ss_pred cHHHHHHHHHHcC--CcHHH-----------H------------------------------------------------
Confidence 9999999999875 33343 1
Q ss_pred HhcCCCCCchhccccCCCCEEE-EEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccc
Q 002472 661 MCADEDGDLLIESSVKNIPKVF-TVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAF 739 (918)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~-v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (918)
++.++.+++...++.+ ++++ +..+++...+-||...
T Consensus 124 ------gdlTf~EA~~~tgr~lnI~vt--~~~~~~~~~lln~~ts----------------------------------- 160 (298)
T cd07206 124 ------GDLTFQEAYERTGRIINITVA--PAEPHQNSRLLNALTS----------------------------------- 160 (298)
T ss_pred ------cCCCHHHHHHhcCCEEEEEEE--ECCCCCceEEecccCC-----------------------------------
Confidence 1222222222333333 3333 3344444344444311
Q ss_pred cCCCchhHHHHHHhhccCCCCCCCccC-------------CCceeeecccccCCcHHHHHHH
Q 002472 740 IGSCKHQVWQAIRASSAAPYYLDDFSD-------------DVFRWQDGAIVANNPTIFAIRE 788 (918)
Q Consensus 740 ~~~~~~~l~~a~rASsAaP~~F~p~~~-------------~~~~~vDGGl~~NnP~~~al~e 788 (918)
.++.+|+|++||||+|++|+|+.+ ++..|+|||+.+|.|+..+.++
T Consensus 161 ---pnv~i~sAv~AS~slP~~f~pv~l~~k~~~g~~~p~~~g~~~~DGgv~~~iPv~~l~~~ 219 (298)
T cd07206 161 ---PNVLIWSAVLASCAVPGVFPPVMLMAKNRDGEIVPYLPGRKWVDGSVSDDLPAKRLARL 219 (298)
T ss_pred ---CchHHHHHHhhccCccccccCeEEEeecCCCccccCCCCCcccCCCcCcchHHHHHHHH
Confidence 167899999999999999999986 6789999999999999876443
No 26
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.85 E-value=7.5e-21 Score=197.29 Aligned_cols=165 Identities=20% Similarity=0.294 Sum_probs=121.6
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||+||+||+||+++|+|. +.++...||.|+|||+||++|++++.+ ++.+++.+.+.++.+..-.+..
T Consensus 3 Lsl~GGG~rG~yh~GVl~aL~e~-~~~l~~~~~~i~GtSAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~~------ 74 (252)
T cd07221 3 LSFAGCGFLGFYHVGVTRCLSER-APHLLRDARMFFGASAGALHCVTFLSG-LPLDQILQILMDLVRSARSRNI------ 74 (252)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHh-CcchhccCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcccccc------
Confidence 89999999999999999999995 444455699999999999999999876 7889999988876543221100
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCC
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~ 702 (918)
+ .+.........+++.+++++... ..+.. ..+..+.+| +..++++++|+++.
T Consensus 75 -----------g--------~~~~~~~~~~~l~~~l~~~lp~~-----~~~~~--~~~l~I~~T--~l~tg~~v~~~~f~ 126 (252)
T cd07221 75 -----------G--------ILHPSFNLSKHLRDGLQRHLPDN-----VHQLI--SGKMCISLT--RVSDGENVLVSDFH 126 (252)
T ss_pred -----------c--------ccCcccCHHHHHHHHHHHHCCcC-----HHHhc--CCCEEEEEE--ECCCCCEEEEecCC
Confidence 0 00111122356777777776431 12111 234455554 78899999998765
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCC--CCCccCCCceeeecccccCC
Q 002472 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (918)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~--F~p~~~~~~~~vDGGl~~Nn 780 (918)
. +..+++|++||||+|+| |.|+.++|+.|+|||+.+|.
T Consensus 127 s----------------------------------------~~~l~~av~AS~siP~~~g~~P~~~~G~~yvDGGv~dnl 166 (252)
T cd07221 127 S----------------------------------------KDEVVDALVCSCFIPFFSGLIPPSFRGVRYVDGGVSDNV 166 (252)
T ss_pred C----------------------------------------chHHHHHHHHHccCccccCCCCeEECCEEEEeCCcccCC
Confidence 2 23589999999999999 56778999999999999999
Q ss_pred cHH
Q 002472 781 PTI 783 (918)
Q Consensus 781 P~~ 783 (918)
|+.
T Consensus 167 Pv~ 169 (252)
T cd07221 167 PFF 169 (252)
T ss_pred Ccc
Confidence 986
No 27
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=99.85 E-value=2.9e-20 Score=200.94 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=154.4
Q ss_pred hhhHHHHHHHHHHhccchH-------H--HHHhh--cCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccc
Q 002472 507 PRVNKAAARALAILGENES-------L--RRAIR--GRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFD 575 (918)
Q Consensus 507 ~~i~~~a~~al~~l~~~~~-------~--~~~~~--~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD 575 (918)
+++..+.+.+|..+.+.+. + +.+.+ .+.....|..+|+|+|||++|++|+||+++|+| .+..+|
T Consensus 39 e~Yi~ev~~~L~~l~~~~~~~~~~~~~~~~~kl~ff~~~r~~fGrtAlvlsGGg~~G~~h~Gv~kaL~e-----~gl~p~ 113 (391)
T cd07229 39 EEYITEVAECLEYVTALQTSPMHSKGFSSQAKLDFFHDTRQSFGRTALVLQGGSIFGLCHLGVVKALWL-----RGLLPR 113 (391)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHHhcCCEEEEecCcHHHHHHHHHHHHHHHH-----cCCCCc
Confidence 4677888888888763221 1 11111 133356789999999999999999999999999 677889
Q ss_pred eeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccc--cCCCCC-C--Cchhh----hHHHHHHHHhhhcccceeEEeec
Q 002472 576 LVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLV--FAEPFP-K--DNEAA----TWREKLDQIYKSSSQSFRVVVHG 646 (918)
Q Consensus 576 ~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~i--F~~~~~-~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 646 (918)
+|+|||+|||+|+++|. .+.+|+.+++....-.. |..... . ..... .+...+.+++ ..+
T Consensus 114 ~i~GtS~Gaivaa~~a~--~~~~e~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l----------~~G 181 (391)
T cd07229 114 IITGTATGALIAALVGV--HTDEELLRFLDGDGIDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLL----------REG 181 (391)
T ss_pred eEEEecHHHHHHHHHHc--CCHHHHHHHHhccchhhhhhhhhccccccccccccccchHHHHHHHHH----------cCC
Confidence 99999999999999997 48899998887532211 211000 0 00001 1222233332 246
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCC
Q 002472 647 SKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSP 726 (918)
Q Consensus 647 ~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (918)
..+|.+.+++++++.+ ++.+|++++...+|+..++++.....+.|.+++..+.|
T Consensus 182 ~l~D~~~l~~~lr~~l----gd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaP---------------------- 235 (391)
T cd07229 182 YFLDVKVLEEFVRANL----GDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAP---------------------- 235 (391)
T ss_pred CcccHHHHHHHHHHHc----CCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCC----------------------
Confidence 7899999999999999 78899999988888777776554557788888876655
Q ss_pred CCCCccccccccccCCCchhHHHHHHhhccCCCCCC-CccC-----CC-------------ce-eeecccccCCcHH
Q 002472 727 TTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD-DFSD-----DV-------------FR-WQDGAIVANNPTI 783 (918)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~-p~~~-----~~-------------~~-~vDGGl~~NnP~~ 783 (918)
|+.||.|++||||.|+.|+ |+.+ +| .. +.||.+....|..
T Consensus 236 -----------------nVlIwsAv~aS~a~p~~~~~~~~L~~Kd~~G~ivp~~~~~~~~~~~~~~dgs~~~DlP~~ 295 (391)
T cd07229 236 -----------------NVLIWSAALASNASSAALYRSVTLLCKDETGSIVPWPPVQVLFFRSWRGANYSERESPLA 295 (391)
T ss_pred -----------------CchHHHHHHHHcCCccccCCCceEEEECCCCCEeeCCCcccccccccccCCCccccChHH
Confidence 8899999999999999887 6531 11 22 4578888999983
No 28
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.85 E-value=7.4e-21 Score=198.15 Aligned_cols=167 Identities=17% Similarity=0.293 Sum_probs=118.3
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|.|||+||+||+||+++|+|+ |.++...||.|+|||+||++|++++......+++.+.+..+.+.+.......
T Consensus 2 L~l~GGG~rG~yhiGVl~~L~e~-g~~l~~~~~~i~GtSaGAl~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (246)
T cd07222 2 LSFAACGFLGIYHLGAAKALLRH-GKKLLKRVKRFAGASAGSLVAAVLLTAPEKIEECKEFTYKFAEEVRKQRFGA---- 76 (246)
T ss_pred eeEcccHHHHHHHHHHHHHHHHc-CchhhccCCEEEEECHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC----
Confidence 89999999999999999999993 4344556999999999999999998543345666555544443332211000
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCC
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~ 702 (918)
+..+....+.+++.+++++.. .+.+.. ..++.+++| +..++++++|+.+.
T Consensus 77 ---------------------~~~~~~~~~~l~~~l~~~lp~-----~~~~~~--~~~l~I~aT--dl~tg~~v~~~~f~ 126 (246)
T cd07222 77 ---------------------MTPGYDFMARLRKGIESILPT-----DAHELA--NDRLHVSIT--NLKTRKNYLVSNFT 126 (246)
T ss_pred ---------------------CCCcchHHHHHHHHHHHHCCH-----HHHhcC--CCcEEEEEE--ECCCCCeEEEeccC
Confidence 011122245677778877742 112211 234455554 78899999998765
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCC--CCCccCCCceeeecccccCC
Q 002472 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (918)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~--F~p~~~~~~~~vDGGl~~Nn 780 (918)
.. ..+.+|++||||+|+| |+|+.++|..|+|||+.+|.
T Consensus 127 s~----------------------------------------~~L~~av~AS~aiP~~~g~~pv~~~G~~~vDGGv~~~~ 166 (246)
T cd07222 127 SR----------------------------------------EDLIKVLLASCYVPVYAGLKPVEYKGQKWIDGGFTNSL 166 (246)
T ss_pred Cc----------------------------------------chHHHHHHHhhcCccccCCCCeEECCEEEEecCccCCC
Confidence 32 2488999999999998 69999999999999999999
Q ss_pred cHHH
Q 002472 781 PTIF 784 (918)
Q Consensus 781 P~~~ 784 (918)
|+..
T Consensus 167 P~~~ 170 (246)
T cd07222 167 PVLP 170 (246)
T ss_pred CCCC
Confidence 9754
No 29
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.3e-22 Score=214.50 Aligned_cols=307 Identities=20% Similarity=0.200 Sum_probs=224.5
Q ss_pred CCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCc-ccCCCCCCcEEe
Q 002472 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLY 203 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~ 203 (918)
+.-+.|++++|.++..-+..|.++++|+.+++.+|. ...+|.......+|+.|+|.+|.|+++.. .+..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~--Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE--LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch--hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345679999999998888888999999999999997 45677777777889999999999996653 478889999999
Q ss_pred ccCCCCCCCc-ccccCCcCcceeecccccccccc-hhccCCCCCcEEEeecCCCCCCcc-cccCCCCCCEEEeeCCCCCC
Q 002472 204 LDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEF 280 (918)
Q Consensus 204 L~~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~L~~N~l~~ 280 (918)
|+.|.|+.+| ..+..-.++++|+|++|.|+.+- ..|.++.+|..|.|++|+++.++. .|.+|++|+.|+|..|+|..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 9999999887 45666688999999999999663 467888899999999999998885 58889999999999999986
Q ss_pred Cc--CcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhh-hhhhccCCCCchhhHHHHhhhccC
Q 002472 281 LP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLASALAKIMQDQ 357 (918)
Q Consensus 281 l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~~~l~~~L~~ll~l~ 357 (918)
+. .|.++++|+.|.|..|.|..+.+=. +-.+.+++.+++..|++...-. .++.|.+|+ .++++
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~----------~L~lS 301 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE----------QLDLS 301 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccchhhhhhcccccccchhh----------hhccc
Confidence 64 5788999999999999998743211 2347889999999999988764 667777663 35777
Q ss_pred CCce-eeccc-ccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHH
Q 002472 358 ENRV-VVGKD-ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVG 434 (918)
Q Consensus 358 ~N~l-~ip~~-~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~ 434 (918)
.|.+ .+..+ ....++|+.|+++.|. |..+....-.. ..+-+++....-+ ......+|.++.
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~---------i~~l~~~sf~~L~~Le~LnLs~Nsi-------~~l~e~af~~ls 365 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNR---------ITRLDEGSFRVLSQLEELNLSHNSI-------DHLAEGAFVGLS 365 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccc---------cccCChhHHHHHHHhhhhcccccch-------HHHHhhHHHHhh
Confidence 7877 44333 3568899999999987 44443222111 2222222222111 233344555555
Q ss_pred HHh---hCChHH------HHHHhhhchHHHHHHHhcCCCh
Q 002472 435 QLA---FASDTV------AQKMLTKDVLKSLKLLCAHKNP 465 (918)
Q Consensus 435 ~l~---~~~~~~------~~~v~~~g~~p~L~~Ll~~~~~ 465 (918)
++- ..+.+. ....|. | ||.|.+|..+.+.
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~-g-l~~LrkL~l~gNq 403 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFN-G-LPSLRKLRLTGNQ 403 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhc-c-chhhhheeecCce
Confidence 543 222221 223332 4 9999999887766
No 30
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=2.2e-21 Score=195.58 Aligned_cols=176 Identities=24% Similarity=0.346 Sum_probs=156.3
Q ss_pred hhhHHHHhhhccCCCceeecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCCh
Q 002472 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (918)
Q Consensus 345 ~l~~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~ 423 (918)
...|+|+++.+...++..+..+.++.|-+..|..+.+..|.++++|+||||+||++.+ +.|+++|++.+++.++.+...
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~ 213 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI 213 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence 3589999999999999988889999999999999999999999999999999999999 999999999999988654332
Q ss_pred -------------------------HHHHHHHHHHHHHhhCCh-------------------HHHHHHhhhchHHHHHHH
Q 002472 424 -------------------------EEVKSVLQVVGQLAFASD-------------------TVAQKMLTKDVLKSLKLL 459 (918)
Q Consensus 424 -------------------------~~~~~~l~~L~~l~~~~~-------------------~~~~~v~~~g~~p~L~~L 459 (918)
..+++++|.|..++..-| +.++.+++.|++++|++|
T Consensus 214 ~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl 293 (526)
T COG5064 214 HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL 293 (526)
T ss_pred hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH
Confidence 333445555555544333 337899999999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 460 CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 460 l~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
|.|....++++|+|.+|||++|++.|+|++++.|+++.+..+|++..+.++||+||+++++
T Consensus 294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-22 Score=213.19 Aligned_cols=252 Identities=18% Similarity=0.193 Sum_probs=142.1
Q ss_pred eehhhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcc-cC
Q 002472 116 VEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LT 194 (918)
Q Consensus 116 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~ 194 (918)
+..+.++.++.|+.||||.|.|+...-.+|..-.++++|+|++|+ ++..-...|..+.+|..|.|++|+|+.+|.. |.
T Consensus 140 v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 140 VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhh
Confidence 334555556666666666666665444455555566666666666 4555555566666666666666666666644 33
Q ss_pred CCCCCcEEeccCCCCCCC-cccccCCcCcceeecccccccccch-hccCCCCCcEEEeecCCCCCCcc-cccCCCCCCEE
Q 002472 195 RLPVLEKLYLDNNKLSTL-PPELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKIL 271 (918)
Q Consensus 195 ~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L 271 (918)
+|++|+.|+|..|+|..+ --.|.+|++|+.|.|..|++..+.+ .|..+.++++|+|+.|+++.+.. ++.+|++|+.|
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 466666666666666533 2345666666666666666665533 45566666666666666665553 35666666777
Q ss_pred EeeCCCCC--CCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhh-hhhhccCCCCchhhH
Q 002472 272 RLFGNPLE--FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLAS 348 (918)
Q Consensus 272 ~L~~N~l~--~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~~~l~~ 348 (918)
+|++|.|. .+..+..+++|++|+|++|+|+.++.=. +..|+.|+.+.++.|.+..+-. .+-.+++|+
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~------ 368 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH------ 368 (873)
T ss_pred ccchhhhheeecchhhhcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhHHHHhhhhh------
Confidence 77777666 3335556666777777777666532211 1124455555556655554432 222222221
Q ss_pred HHHhhhccCCCce-eec----ccccccCcccEEECcCCc
Q 002472 349 ALAKIMQDQENRV-VVG----KDENAVRQLISMISSDNR 382 (918)
Q Consensus 349 ~L~~ll~l~~N~l-~ip----~~~~~L~~L~~L~ls~N~ 382 (918)
-++++.|.+ ... ..+.+|+.|..|.+.+|+
T Consensus 369 ----~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 369 ----KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred ----hhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 135566655 111 122456666666666665
No 32
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=99.84 E-value=1.6e-20 Score=194.25 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=118.5
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||+||+||+||+++|+|+- +...+|.|+|||+||++|++++.+ .+.+++.+.+.++.++...... .
T Consensus 3 LsfsGGG~rG~yh~GVl~aL~e~g---~~~~~d~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~l-g---- 73 (245)
T cd07218 3 LSFAGCGFLGIYHVGVAVCLKKYA---PHLLLNKISGASAGALAACCLLCD-LPLGEMTSDFLRVVREARRHSL-G---- 73 (245)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHhC---cccCCCeEEEEcHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhcc-c----
Confidence 899999999999999999999932 223478999999999999999976 6888888777766553321100 0
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccC
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny 701 (918)
...+.|+ .+.+++.+++.+.+. ..+. ...++.+.+| +..+++.++|+.+
T Consensus 74 ---------------------~~~p~~~l~~~l~~~l~~~lp~d----~~~~---~~~~L~i~~T--~l~~g~~~~~s~f 123 (245)
T cd07218 74 ---------------------PFSPSFNIQTCLLEGLQKFLPDD----AHER---VSGRLHISLT--RVSDGKNVIVSEF 123 (245)
T ss_pred ---------------------CCccccCHHHHHHHHHHHHCCcc----hHHh---CCCCEEEEEE--ECCCCCeEEEecC
Confidence 0012233 456777788877432 1121 1234555554 6788999999876
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCC--CCCccCCCceeeecccccC
Q 002472 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (918)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~--F~p~~~~~~~~vDGGl~~N 779 (918)
.. +..+++|++|||++|+| |.|+.++|+.|+|||+.+|
T Consensus 124 ~s----------------------------------------~~dLi~al~AS~~IP~~~g~~P~~~~G~~~vDGGv~dn 163 (245)
T cd07218 124 ES----------------------------------------REELLQALLCSCFIPVFSGLLPPKFRGVRYMDGGFSDN 163 (245)
T ss_pred CC----------------------------------------cchHHHHHHHhcCCCcccCCCCeEECCEEEEcCcccCC
Confidence 52 23589999999999999 5677888999999999999
Q ss_pred CcH
Q 002472 780 NPT 782 (918)
Q Consensus 780 nP~ 782 (918)
.|+
T Consensus 164 lP~ 166 (245)
T cd07218 164 LPT 166 (245)
T ss_pred CCC
Confidence 998
No 33
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=99.84 E-value=9.7e-22 Score=200.97 Aligned_cols=200 Identities=23% Similarity=0.289 Sum_probs=103.5
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||+||++++|+|++| +.+..+.||+|+|||+||++|++++.+ .+.++..+.+..+....+......
T Consensus 1 LvlsGGG~rg~~~~G~l~~L----~~~~~~~~d~i~GtS~Gal~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 71 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKAL----GQGLGERFDVISGTSAGALNAALLALG-YDPDESLDQFYDLWRNLFFSSNLM---- 71 (204)
T ss_dssp EEE---CCGCCCCHHHHHHH----CCTGCCT-SEEEEECCHHHHHHHHHTC--TCCCCCCHHCCHHHHHHHCCCTH----
T ss_pred CEEcCcHHHHHHHHHHHHHH----hhhhCCCccEEEEcChhhhhHHHHHhC-CCHHHHHHHHHHHHHhhccccccc----
Confidence 79999999999999999999 345888999999999999999999876 343443333332222222221100
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEe----eeccCCCcceEe
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVST----LVNVMPAQPFIF 698 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t----~~~~~~~~~~~f 698 (918)
+. ................+..|+.+.+++.+++.+.+. ..+.......+...... ............
T Consensus 72 --~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (204)
T PF01734_consen 72 --KR---RRPRKAFRRLRGLFGGSGLFDSEPLRDWLRRVLGDL----TLEEFSARLPRAIGAADDFTTRSRSIFQSPSSP 142 (204)
T ss_dssp -----------HHT-------SSS-SS--HHHHHHHHHHHCCH----CHHHHCTCECCC-EE--------------EEEC
T ss_pred --cc---cccccccccccccccCccchhHHHHHHHHHHhcccc----CHHHhhhcccccccccccccccccccccccccc
Confidence 00 000000111223345567889999999999998532 22222221111100000 000000000000
Q ss_pred ccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeeeccccc
Q 002472 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVA 778 (918)
Q Consensus 699 ~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vDGGl~~ 778 (918)
...... .............+..+++|++||+|+|++|+|+++++..|+|||+.+
T Consensus 143 ~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~a~~AS~a~P~~~~p~~~~g~~~~DGG~~~ 196 (204)
T PF01734_consen 143 FRASSN--------------------------NFNESRSRYDFDPDVPLWDAVRASSAIPGIFPPVKIDGEYYIDGGILD 196 (204)
T ss_dssp CCCECC--------------------------EEECCCCCTTCCCTSBHHHHHHHCCHSTTTSTTEEETS-EEEEGGGCS
T ss_pred cccccc--------------------------ccccccccccCCCcchHHHhhChhccccccCCCEEECCEEEEecceee
Confidence 000000 000001112223477899999999999999999999999999999999
Q ss_pred CCcHHHHH
Q 002472 779 NNPTIFAI 786 (918)
Q Consensus 779 NnP~~~al 786 (918)
|+|+..|+
T Consensus 197 n~P~~~a~ 204 (204)
T PF01734_consen 197 NNPIEAAL 204 (204)
T ss_dssp ---GGGC-
T ss_pred ccccccCC
Confidence 99998764
No 34
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=9.6e-21 Score=240.14 Aligned_cols=252 Identities=22% Similarity=0.238 Sum_probs=122.7
Q ss_pred CCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc-ccCcccCCCCCCcEE
Q 002472 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKL 202 (918)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 202 (918)
+++|++|+|++|.+++.+|..++++++|++|+|++|. +.+..|..+.++++|++|+|++|.++ .+|..++++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4445555555555544445555555555555555554 33444444555555555555555544 444445555555555
Q ss_pred eccCCCCC-CCcccccCCcCcceeeccccccc-ccchhccCCCCCcEEEeecCCCCCCc-ccccCCCCCCEEEeeCCCCC
Q 002472 203 YLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPLE 279 (918)
Q Consensus 203 ~L~~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~-~~l~~l~~L~~L~L~~N~l~ 279 (918)
+|++|.++ .+|..++++++|++|++++|+++ .+|..+.++++|++|++++|.+++.. ..+.++++|++|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555554 44555555555555555555554 44555555555555555555554333 23455555555555555554
Q ss_pred -CCc-CcCCCCCCcEEEccCCCCCCC--cCcchhhhhhcccCCccccccccccchhhh-hhhhccCCCCchh--------
Q 002472 280 -FLP-EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLL-------- 346 (918)
Q Consensus 280 -~l~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~~~l-------- 346 (918)
.+| .+..+++|+.|++++|.+.+. ..+. .+++|+.+++..|.+.+..| .+..+.+++.+.+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALT------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHh------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 233 244455555555555555431 1111 24555555666565554332 3333333322110
Q ss_pred -hHHHH-----hhhccCCCce--eecccccccCcccEEECcCCc
Q 002472 347 -ASALA-----KIMQDQENRV--VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 347 -~~~L~-----~ll~l~~N~l--~ip~~~~~L~~L~~L~ls~N~ 382 (918)
+..+. ..+++.+|.+ .+|.+++.+++|+.|++++|.
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 11111 0123444444 455555666777777776664
No 35
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=8.2e-21 Score=240.73 Aligned_cols=257 Identities=21% Similarity=0.251 Sum_probs=210.5
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc-ccCcccCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLP 197 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 197 (918)
..+.++++|+.|+|++|.+.+.+|..+.++++|++|+|++|. +.+..|..+.++++|++|+|++|.++ .+|..+++++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 567889999999999999999999999999999999999998 67778888999999999999999998 7888899999
Q ss_pred CCcEEeccCCCCC-CCcccccCCcCcceeeccccccc-ccchhccCCCCCcEEEeecCCCCCCcc-cccCCCCCCEEEee
Q 002472 198 VLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (918)
Q Consensus 198 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~L~ 274 (918)
+|++|++++|.++ .+|..++++++|++|++++|+++ .+|..+.++++|++|++++|.+++..+ .+.++++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 9999999999998 78889999999999999999998 788899999999999999999987664 48899999999999
Q ss_pred CCCCC-CCc-CcCCCCCCcEEEccCCCCCC--CcCcchhhhhhcccCCccccccccccchhhh-hhhhccCCCCch----
Q 002472 275 GNPLE-FLP-EILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPL---- 345 (918)
Q Consensus 275 ~N~l~-~l~-~l~~l~~L~~L~L~~N~i~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~l~~l~~~~---- 345 (918)
+|.++ .+| .+..+++|+.|++++|.+.+ +..+. .+.+++.++++.|.+.+..+ .+..+.++..+.
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 99987 444 57789999999999999875 22222 36677888888888876543 343333332221
Q ss_pred -----hhHHHHh-----hhccCCCce--eecccccccCcccEEECcCCc
Q 002472 346 -----LASALAK-----IMQDQENRV--VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 346 -----l~~~L~~-----ll~l~~N~l--~ip~~~~~L~~L~~L~ls~N~ 382 (918)
++..+.. .+++++|.+ .+|..+..++.|+.|++++|.
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 1222221 146677776 677778899999999999986
No 36
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=99.84 E-value=3.1e-20 Score=192.74 Aligned_cols=174 Identities=18% Similarity=0.311 Sum_probs=129.3
Q ss_pred hhhHHHHHHHHHHhccch--H--HHHHhhc--CCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeec
Q 002472 507 PRVNKAAARALAILGENE--S--LRRAIRG--RQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGT 580 (918)
Q Consensus 507 ~~i~~~a~~al~~l~~~~--~--~~~~~~~--~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GT 580 (918)
+++.+|.+.+|..+.+.+ . .+++... +.....|...|+|+|||+||++|+||+++|+| .+..+|+|+||
T Consensus 29 e~Yi~ev~~~L~~l~~~~~~~~~~~~kl~ff~~~r~~~G~~aLvlsGGg~~g~~h~GVlkaL~e-----~gl~p~~i~Gs 103 (323)
T cd07231 29 RDYIAEVKAQLRAVVESDEDELSLEEKLAFFQETRHAFGRTALLLSGGAALGTFHVGVVRTLVE-----HQLLPRVIAGS 103 (323)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHHHHH-----cCCCCCEEEEE
Confidence 467888888888885432 1 1112111 23345678999999999999999999999999 56678999999
Q ss_pred ChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHH
Q 002472 581 STGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKE 660 (918)
Q Consensus 581 S~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 660 (918)
|+||++|++++. ++.+|+.+++ ++
T Consensus 104 SaGAivaa~~~~--~t~~El~~~~------------------------------------------------------~~ 127 (323)
T cd07231 104 SVGSIVCAIIAT--RTDEELQSFF------------------------------------------------------RA 127 (323)
T ss_pred CHHHHHHHHHHc--CCHHHHHHHH------------------------------------------------------HH
Confidence 999999999986 3677776655 22
Q ss_pred HhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCcccccccccc
Q 002472 661 MCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFI 740 (918)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (918)
.+ |+.+|+++++..+++..+++........|.+++..+.|
T Consensus 128 ~~----gd~TF~Eay~~tgr~lnI~v~~~~~~~~~~lln~~T~P------------------------------------ 167 (323)
T cd07231 128 LL----GDLTFQEAYDRTGRILGITVCPPRKSEPPRLLNYLTSP------------------------------------ 167 (323)
T ss_pred Hc----CcccHHHHHhccCCEEEEEEecccCCCCceeeccCCCC------------------------------------
Confidence 22 55666776666666665554333344677788766544
Q ss_pred CCCchhHHHHHHhhccCCCCCCCcc------------CC-------CceeeecccccCCcHHH
Q 002472 741 GSCKHQVWQAIRASSAAPYYLDDFS------------DD-------VFRWQDGAIVANNPTIF 784 (918)
Q Consensus 741 ~~~~~~l~~a~rASsAaP~~F~p~~------------~~-------~~~~vDGGl~~NnP~~~ 784 (918)
|+.||.|++||||+|++|+|+. .. +..|+||++..+.|...
T Consensus 168 ---nv~I~sAv~aS~a~P~if~~~~L~~Kd~~G~ivp~~~~~~~~~~~~~~DGs~~~dlP~~r 227 (323)
T cd07231 168 ---HVVIWSAVAASCAFPGLFEAQELMAKDRFGEIVPYHPPGKVSSPRRWRDGSLEQDLPMQQ 227 (323)
T ss_pred ---CcHHHHHHHHHcCChhhccceeEEEECCCCCEeeccCCCccccccccccCcccccCchHH
Confidence 7899999999999999999876 22 35699999999999876
No 37
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=3.2e-22 Score=216.18 Aligned_cols=175 Identities=23% Similarity=0.301 Sum_probs=90.5
Q ss_pred CCccEEEeecCCCCC-cCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEe
Q 002472 125 EPLRAVVLTKGVGSG-HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 203 (918)
+-++-+|+++|.++| .+|.....+++++.|.|.... ...+|..++.+.+|++|.+++|++..+-..+..|+.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~--L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK--LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh--hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 334445555555552 245555555555555555444 23445555555555555555555554444455555555555
Q ss_pred ccCCCCC--CCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCccc-ccCCCCCCEEEeeCCCCCC
Q 002472 204 LDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAELKILRLFGNPLEF 280 (918)
Q Consensus 204 L~~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~L~~N~l~~ 280 (918)
+.+|++. .+|..+..|..|.+||||+|++++.|..+..-+++-.|+||+|+|..+|.. |.+|+.|-.|||++|++..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 5555554 455555555555555555555555555555555555555555555544422 4455555555555555553
Q ss_pred Cc-CcCCCCCCcEEEccCCCCC
Q 002472 281 LP-EILPLLKLRHLSLANIRIV 301 (918)
Q Consensus 281 l~-~l~~l~~L~~L~L~~N~i~ 301 (918)
+| ....+..|++|+|++|++.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhh
Confidence 33 4445555555555555543
No 38
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=99.83 E-value=3.7e-20 Score=197.00 Aligned_cols=169 Identities=16% Similarity=0.225 Sum_probs=119.6
Q ss_pred cceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCC
Q 002472 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (918)
Q Consensus 539 ~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~ 618 (918)
....|+|+|||+||+||+||+++|+|. +.++...||.|+|||+||++|++++.+ ++.+++.+.+....... .+.
T Consensus 11 ~~~gLvFsGGGfrGiYHvGVl~aL~E~-gp~ll~~~d~IaGtSAGALvAAl~asG-~s~de~~r~~~~~~~~~-r~~--- 84 (382)
T cd07219 11 TPHSISFSGSGFLSFYQAGVVDALRDL-APRMLETAHRVAGTSAGSVIAALVVCG-ISMDEYLRVLNVGVAEV-RKS--- 84 (382)
T ss_pred CCceEEEcCcHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH-HHh---
Confidence 345699999999999999999999983 444556799999999999999999876 78999888876443322 100
Q ss_pred CchhhhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceE
Q 002472 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFI 697 (918)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~ 697 (918)
+++. ....+. .+.+++.+++.+.+ ..+. ....++.|++| +..+++.++
T Consensus 85 -------------~lG~---------~~p~~~l~~~lr~~L~~~LP~----da~e---~~~g~L~IsaT--dl~tGknv~ 133 (382)
T cd07219 85 -------------FLGP---------LSPSCKMVQMMRQFLYRVLPE----DSYK---VATGKLHVSLT--RVTDGENVV 133 (382)
T ss_pred -------------hccC---------ccccchHHHHHHHHHHhhCcH----hhHH---hCCCcEEEEEE--ECCCCCEEE
Confidence 0000 001110 13445556555532 1122 12245556555 788999999
Q ss_pred eccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCC--CCccCCCceeeecc
Q 002472 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGA 775 (918)
Q Consensus 698 f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F--~p~~~~~~~~vDGG 775 (918)
|+.+.. +..+.+|++||||+|+|+ .|+.++|+.|+|||
T Consensus 134 fS~F~S----------------------------------------~~dLidAV~AScaIP~y~G~~Pp~irG~~yVDGG 173 (382)
T cd07219 134 VSEFTS----------------------------------------KEELIEALYCSCFVPVYCGLIPPTYRGVRYIDGG 173 (382)
T ss_pred EeccCC----------------------------------------cchHHHHHHHHccCccccCCcCeEECCEEEEcCC
Confidence 997652 235899999999999995 45689999999999
Q ss_pred cccCCcHHH
Q 002472 776 IVANNPTIF 784 (918)
Q Consensus 776 l~~NnP~~~ 784 (918)
+.+|.|+..
T Consensus 174 vsdnlPv~~ 182 (382)
T cd07219 174 FTGMQPCSF 182 (382)
T ss_pred ccCCcCccC
Confidence 999999853
No 39
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=99.83 E-value=3.9e-20 Score=192.35 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=116.6
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|.|||.||+||+||+++|+|. +.++...+|.|+|||+||++|++++.+ ++.+++.+.+.++..+......
T Consensus 2 LslsGGG~~G~yh~GVl~~L~e~-g~~l~~~~~~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~------ 73 (243)
T cd07204 2 LSFSGCGFLGIYHVGVASALREH-APRLLQNARRIAGASAGAIVAAVVLCG-VSMEEACSFILKVVSEARRRSL------ 73 (243)
T ss_pred eeEcchHHHHHHHHHHHHHHHHc-CcccccCCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHhhhhhhhc------
Confidence 89999999999999999999983 222222257999999999999999976 7889987777666543321100
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccC
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny 701 (918)
+. ....|. .+.+++.+.+.+.+. ..+. ...++.|++| +..++++++|+.+
T Consensus 74 ----g~----------------~~~~~~~~~~l~~~l~~~lp~~----~~~~---~~~~l~I~~T--~l~~g~~~~~~~f 124 (243)
T cd07204 74 ----GP----------------LHPSFNLLKILRQGLEKILPDD----AHEL---ASGRLHISLT--RVSDGENVLVSEF 124 (243)
T ss_pred ----Cc----------------ccccchHHHHHHHHHHHHCChh----HHHh---cCCCEEEEEE--ECCCCCEEEEecC
Confidence 00 001111 134556666666321 1121 1234555554 7889999999876
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCC--CCCccCCCceeeecccccC
Q 002472 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (918)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~--F~p~~~~~~~~vDGGl~~N 779 (918)
+.+ ..+.+|++||||+|+| |.|+.++|+.|+|||+.+|
T Consensus 125 ~s~----------------------------------------~~Li~Al~AS~~iP~~~g~~P~~~~G~~~vDGGv~~~ 164 (243)
T cd07204 125 DSK----------------------------------------EELIQALVCSCFIPFYCGLIPPKFRGVRYIDGGLSDN 164 (243)
T ss_pred CCc----------------------------------------hHHHHHHHHhccCCcccCCCCeEECCEEEEeCCcccC
Confidence 532 2478999999999999 5789999999999999999
Q ss_pred CcHHH
Q 002472 780 NPTIF 784 (918)
Q Consensus 780 nP~~~ 784 (918)
.|+..
T Consensus 165 lP~~~ 169 (243)
T cd07204 165 LPILD 169 (243)
T ss_pred CCCCC
Confidence 99863
No 40
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.81 E-value=1.5e-19 Score=186.80 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=115.5
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCch
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~ 621 (918)
-|+|+|||+||+||+||+++|+|+ +.++...||.|+|||+||++|++++.+ .+.+++.+...++++..=.+
T Consensus 6 ~LsfsGGG~rG~yh~GVl~~L~e~-g~~l~~~~~~i~G~SAGAl~aa~~a~g-~~~~~~~~~~~~~a~~~r~~------- 76 (249)
T cd07220 6 NISFAGCGFLGVYHVGVASCLLEH-APFLVANARKIYGASAGALTATALVTG-VCLGECGASVIRVAKEARKR------- 76 (249)
T ss_pred eEEEeChHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhhHh-------
Confidence 399999999999999999999985 334455589999999999999999876 68888777766654322000
Q ss_pred hhhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEecc
Q 002472 622 AATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (918)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~n 700 (918)
+.+. ..+.|. .+.+++.+.+.+.+ ..++. ...++.+.+| +..+++.++|++
T Consensus 77 ---~~g~----------------~~~~~~l~~~l~~~l~~~lp~----~a~~~---~~~~l~is~T--~~~tg~~~~~s~ 128 (249)
T cd07220 77 ---FLGP----------------LHPSFNLVKILRDGLLRTLPE----NAHEL---ASGRLGISLT--RVSDGENVLVSD 128 (249)
T ss_pred ---hccC----------------ccccchHHHHHHHHHHHHCCh----hhHHH---CCCcEEEEEE--ECCCCCEEEEec
Confidence 0000 001110 12355555555532 11111 2245555555 788999999998
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCC--CCccCCCceeeeccccc
Q 002472 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGAIVA 778 (918)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F--~p~~~~~~~~vDGGl~~ 778 (918)
+... ..+.+|++|||++|+|+ .|+.++|+.|+|||+.+
T Consensus 129 f~s~----------------------------------------~dLi~al~AScsiP~~~g~~P~~~~G~~yvDGGvsd 168 (249)
T cd07220 129 FNSK----------------------------------------EELIQALVCSCFIPVYCGLIPPTLRGVRYVDGGISD 168 (249)
T ss_pred CCCc----------------------------------------chHHHHHHHhccCccccCCCCeeECCEEEEcCCccc
Confidence 7632 24899999999999885 35568999999999999
Q ss_pred CCcHHH
Q 002472 779 NNPTIF 784 (918)
Q Consensus 779 NnP~~~ 784 (918)
|.|+..
T Consensus 169 nlPv~~ 174 (249)
T cd07220 169 NLPQYE 174 (249)
T ss_pred CCCCCC
Confidence 999863
No 41
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.79 E-value=5.3e-19 Score=182.86 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=113.2
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||.||+||+|||++|+|. .+...|+.|+|||+||++|++++.+ ++.+++.+.+.++..+.+....
T Consensus 2 lsfsggG~lg~yh~GVl~~L~e~---gi~~~~~~i~G~SAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~~------ 71 (233)
T cd07224 2 FSFSAAGLLFPYHLGVLSLLIEA---GVINETTPLAGASAGSLAAACSASG-LSPEEALEATEELAEDCRSNGT------ 71 (233)
T ss_pred eeecchHHHHHHHHHHHHHHHHc---CCCCCCCEEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCC------
Confidence 79999999999999999999982 2333489999999999999999977 7898999888877665543210
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC-cceEecc
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA-QPFIFRN 700 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~-~~~~f~n 700 (918)
.+. ...+++.+++.+.. ...+. ..+ .++.|.+| +..++ +...++.
T Consensus 72 -------------------------~~~~~~~l~~~l~~~lp~----d~~e~-~~~-~~l~i~~T--~~~~~~~~~~v~~ 118 (233)
T cd07224 72 -------------------------AFRLGGVLRDELDKTLPD----DAHER-CNR-GRIRVAVT--QLFPVPRGLLVSS 118 (233)
T ss_pred -------------------------cccHHHHHHHHHHHHcCc----HHHHH-hcC-CCEEEEEE--ecccCCCceEEEe
Confidence 111 23456667766632 12222 111 45556665 44444 3445544
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCC---CccCCCceeeecccc
Q 002472 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD---DFSDDVFRWQDGAIV 777 (918)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~---p~~~~~~~~vDGGl~ 777 (918)
+.. +..+.+|++|||++|+||+ +++++|+.|+|||+.
T Consensus 119 f~~----------------------------------------~~~l~~al~AS~~iP~~~~p~~~v~~~G~~~vDGG~~ 158 (233)
T cd07224 119 FDS----------------------------------------KSDLIDALLASCNIPGYLAPWPATMFRGKLCVDGGFA 158 (233)
T ss_pred cCC----------------------------------------cchHHHHHHHhccCCcccCCCCCeeECCEEEEeCCcc
Confidence 431 1238899999999999998 468999999999999
Q ss_pred cCCcHH
Q 002472 778 ANNPTI 783 (918)
Q Consensus 778 ~NnP~~ 783 (918)
+|.|+.
T Consensus 159 ~~~P~~ 164 (233)
T cd07224 159 LFIPPT 164 (233)
T ss_pred cCCCCC
Confidence 999986
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=4e-22 Score=206.14 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=204.4
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
+.+.++..|..|++.+|+++. +|.+++.+..++.|+.++|+ ...+|..+..+..|+.|+.++|.+.++|++++.+..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~--ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNK--LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred HhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccch--HhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 566788888899999998776 67788888888899999887 456677777888899999999999988888999999
Q ss_pred CcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCC
Q 002472 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (918)
Q Consensus 199 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l 278 (918)
|+.|+..+|+++++|+.+.++.+|..|++.+|++..+|+..-+++.|++|+...|-++.+|++++.+.+|+.|+|..|.|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 99999999999999988888889999999999999888877778899999999999888888899999999999999999
Q ss_pred CCCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCCCchhhHHHHhhhccCC
Q 002472 279 EFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQE 358 (918)
Q Consensus 279 ~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~~l~~~L~~ll~l~~ 358 (918)
..+|+|..|..|.+|+++.|+|.-.+.-. ..+++.+..+|+..|++...|..+.-+.++ +-+++++
T Consensus 219 ~~lPef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklke~Pde~clLrsL----------~rLDlSN 284 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLKEVPDEICLLRSL----------ERLDLSN 284 (565)
T ss_pred ccCCCCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccccCchHHHHhhhh----------hhhcccC
Confidence 98899889999999999999887642111 124777888899999999888777666554 2347888
Q ss_pred Cce-eecccccccCcccEEECcCCc
Q 002472 359 NRV-VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 359 N~l-~ip~~~~~L~~L~~L~ls~N~ 382 (918)
|.+ ..|..+|++ .|+.|.+.+|+
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCc
Confidence 877 788888888 88888888887
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-19 Score=198.90 Aligned_cols=177 Identities=25% Similarity=0.341 Sum_probs=155.2
Q ss_pred hhhHHHHhhhccCCCceeecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCCh
Q 002472 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (918)
Q Consensus 345 ~l~~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~ 423 (918)
..+|+|+++...+..+......-+.+|-|..|.-+.+..++++++|+||||+++++.+ +.|+.+|++.+|+.++.....
T Consensus 129 eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~ 208 (514)
T KOG0166|consen 129 EAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK 208 (514)
T ss_pred HHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc
Confidence 4689999999888777777788899999999999999999999999999999999999 999999999999998765542
Q ss_pred ------------------------HHHHHHHHHHHHHhhCChH-------------------HHHHHhhhchHHHHHHHh
Q 002472 424 ------------------------EEVKSVLQVVGQLAFASDT-------------------VAQKMLTKDVLKSLKLLC 460 (918)
Q Consensus 424 ------------------------~~~~~~l~~L~~l~~~~~~-------------------~~~~v~~~g~~p~L~~Ll 460 (918)
..+..+||+|..++++.|. .+++|++.|++|+|+.||
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 3334455555555554443 388999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhcccc-CCChhhHHHHHHHHHHhc
Q 002472 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAILG 521 (918)
Q Consensus 461 ~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~i~~~a~~al~~l~ 521 (918)
.+....++++|+|++|||++|++.|+|++++.+++++|..++. +....++|||||++++|.
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 566669999999999984
No 44
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=2.5e-21 Score=200.26 Aligned_cols=245 Identities=21% Similarity=0.201 Sum_probs=219.2
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
+..+.-..+..|.+++|.+... .+.+.++..|.+|++.+|+ ....|..++.+..++.|+.++|+++.+|+.++.+.+
T Consensus 39 e~wW~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~--l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNK--LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS 115 (565)
T ss_pred hhhhhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccch--hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh
Confidence 4555666788999999998764 4567889999999999998 455677788999999999999999999999999999
Q ss_pred CcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCC
Q 002472 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (918)
Q Consensus 199 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l 278 (918)
|..|++++|.+..+|++++.+..|+.|+..+|+++++|..+.++.+|..|++.+|++..+++..-+++.|++||...|-+
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998766699999999999999
Q ss_pred CCCc-CcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhh-hccCCCCchhhHHHHhhhcc
Q 002472 279 EFLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIF-RFSSCHHPLLASALAKIMQD 356 (918)
Q Consensus 279 ~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~-~l~~l~~~~l~~~L~~ll~l 356 (918)
+.+| +++.+.+|..|+|..|+|...+.++. .+.+..++++.|.+.-++.... +++++ .++++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g------cs~L~Elh~g~N~i~~lpae~~~~L~~l----------~vLDL 259 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEFPG------CSLLKELHVGENQIEMLPAEHLKHLNSL----------LVLDL 259 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCCCc------cHHHHHHHhcccHHHhhHHHHhcccccc----------eeeec
Confidence 9766 79999999999999999998877775 6678889999999988886554 66655 35789
Q ss_pred CCCce-eecccccccCcccEEECcCCc
Q 002472 357 QENRV-VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 357 ~~N~l-~ip~~~~~L~~L~~L~ls~N~ 382 (918)
+.|++ .+|.++.-+++|..||+|+|.
T Consensus 260 RdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 260 RDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred cccccccCchHHHHhhhhhhhcccCCc
Confidence 99999 899999999999999999998
No 45
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.75 E-value=6.8e-18 Score=166.69 Aligned_cols=173 Identities=24% Similarity=0.289 Sum_probs=108.2
Q ss_pred CCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh--ccccCC
Q 002472 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG--KLVFAE 614 (918)
Q Consensus 537 ~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~--~~iF~~ 614 (918)
..+.-.|++.|||.||++++|||++++.. -..+||+|.||||||..+..+-..+ .........+.+ ++.|.
T Consensus 8 ~~~kvaLV~EGGG~RgifTAGVLD~fl~a----~~~~f~~~~GvSAGA~n~~aYls~Q--~gra~~~~~~yt~d~ry~~- 80 (292)
T COG4667 8 QPGKVALVLEGGGQRGIFTAGVLDEFLRA----NFNPFDLVVGVSAGALNLVAYLSKQ--RGRARRVIVEYTTDRRYFG- 80 (292)
T ss_pred CCCcEEEEEecCCccceehHHHHHHHHHh----ccCCcCeeeeecHhHHhHHHHhhcC--CchHHHHHHHhhcchhhcc-
Confidence 34566899999999999999999999942 4678999999999999988885442 222333333332 12221
Q ss_pred CCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC-
Q 002472 615 PFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA- 693 (918)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~- 693 (918)
| .+++..+..++...+-+ ......-.+.++.......+.++.+| +..++
T Consensus 81 ----------~--------------~~~vr~gn~~n~d~~~~----~~~~~~~~fD~~tf~~~~~k~~~~~~--~~~~g~ 130 (292)
T COG4667 81 ----------P--------------LSFVRGGNYFNLDWAFE----ETPQKLFPFDFDTFSQDKGKFFYMAT--CRQDGE 130 (292)
T ss_pred ----------h--------------hhhhccCcccchHHHHh----hccCcCCCccHHHHhcccCCeEEEEE--eccCCc
Confidence 1 11122334444332222 22221122333333344445444443 34444
Q ss_pred cceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeee
Q 002472 694 QPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQD 773 (918)
Q Consensus 694 ~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vD 773 (918)
++++|..- ....-+++|||||+|+|-++++++|..|+|
T Consensus 131 ~~~~~~~~------------------------------------------~~~~m~viRASSaiPf~~~~V~i~G~~YlD 168 (292)
T COG4667 131 AVYYFLPD------------------------------------------VFNWLDVIRASSAIPFYSEGVEINGKNYLD 168 (292)
T ss_pred cceeeccc------------------------------------------HHHHHHHHHHhccCCCCCCCeEECCEeccc
Confidence 34444310 234679999999999888899999999999
Q ss_pred cccccCCcHHHHHHH
Q 002472 774 GAIVANNPTIFAIRE 788 (918)
Q Consensus 774 GGl~~NnP~~~al~e 788 (918)
||+.+..|+..|+..
T Consensus 169 GGIsdsIPvq~a~~~ 183 (292)
T COG4667 169 GGISDSIPVKEAIRL 183 (292)
T ss_pred CcccccccchHHHHc
Confidence 999999999776653
No 46
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=5.2e-17 Score=191.47 Aligned_cols=216 Identities=21% Similarity=0.182 Sum_probs=117.6
Q ss_pred CccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEecc
Q 002472 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLD 205 (918)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 205 (918)
+|+.|++++|+++. +|. ..++|++|+|++|+ +.. +|.. .++|+.|+|++|.++.+|.. ..+|+.|+|+
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~-Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQ-LTS-LPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCc-cCc-ccCc---ccccceeeccCCchhhhhhc---hhhcCEEECc
Confidence 56667777776665 342 23566777777666 232 2322 24555666666655555432 1344555555
Q ss_pred CCCCCCCcccccCCcCcceeecccccccccchhcc-----------------CCCCCcEEEeecCCCCCCcccccCCCCC
Q 002472 206 NNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-----------------ECVGLVELSLEHNRLVRPLLDFRAMAEL 268 (918)
Q Consensus 206 ~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~-----------------~l~~L~~L~L~~N~l~~~~~~l~~l~~L 268 (918)
+|+++.+|.. +++|+.|+|++|+++.+|.... -..+|+.|+|++|+|+.++.. ..+|
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L 364 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSEL 364 (788)
T ss_pred CCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Cccc
Confidence 5555555431 2345555555555554443111 012455555555555544421 2344
Q ss_pred CEEEeeCCCCCCCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCCCchhhH
Q 002472 269 KILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLAS 348 (918)
Q Consensus 269 ~~L~L~~N~l~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~~l~~ 348 (918)
+.|++++|+|+.+|.+ ..+|+.|+|++|+|+..+.+ .++++.++++.|.++.++... .
T Consensus 365 ~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--------~s~L~~LdLS~N~LssIP~l~------------~ 422 (788)
T PRK15387 365 YKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--------PSELKELMVSGNRLTSLPMLP------------S 422 (788)
T ss_pred ceehhhccccccCccc--ccccceEEecCCcccCCCCc--------ccCCCEEEccCCcCCCCCcch------------h
Confidence 5555555555554432 23556666666665543321 134555666666666543221 1
Q ss_pred HHHhhhccCCCce-eecccccccCcccEEECcCCc
Q 002472 349 ALAKIMQDQENRV-VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 349 ~L~~ll~l~~N~l-~ip~~~~~L~~L~~L~ls~N~ 382 (918)
.+. .+++++|++ .+|..+..+++|..|++++|+
T Consensus 423 ~L~-~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLL-SLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhh-hhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 222 357788888 788889999999999999997
No 47
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=99.72 E-value=5.4e-17 Score=171.48 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=122.8
Q ss_pred CcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCC
Q 002472 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~ 617 (918)
.+---|+|+|||.+|+||+||+++|.|+ +.++....+-|+|+|+|||+|++++.+ .++++|.+...++.++.=...
T Consensus 7 ~~~~~LsfSGgGflG~yHvGV~~~L~e~-~p~ll~~~~~iaGaSAGAL~aa~~a~g-~~~~~~~~~i~~ia~~~r~~~-- 82 (405)
T cd07223 7 EGGWNLSFSGAGYLGLYHVGVTECLRQR-APRLLQGARRIYGSSSGALNAVSIVCG-KSADFCCSNLLGMVKHLERLS-- 82 (405)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHHh-CchhhccCCeeeeeCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhhhc--
Confidence 3445699999999999999999999996 333444557799999999999999876 789977766655543321100
Q ss_pred CCchhhhHHHHHHHHhhhcccceeEEeecCCCC-HHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcce
Q 002472 618 KDNEAATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPF 696 (918)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~ 696 (918)
....++.|+ .+.+++.|++++.+.. .. .-..+..|.+| +..+++-+
T Consensus 83 ------------------------lG~~~p~f~l~~~lr~~L~~~LP~da----He---~~sgrL~ISlT--~l~~gknv 129 (405)
T cd07223 83 ------------------------LGIFHPAYAPIEHIRQQLQESLPPNI----HI---LASQRLGISMT--RWPDGRNF 129 (405)
T ss_pred ------------------------cCCCCccccHHHHHHHHHHHhCCchh----hH---HhCCceEEEEE--EccCCceE
Confidence 001123332 3557778888875321 11 11235556555 68888988
Q ss_pred EeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCC--CCCccCCCceeeec
Q 002472 697 IFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDG 774 (918)
Q Consensus 697 ~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~--F~p~~~~~~~~vDG 774 (918)
+.++|.. ...+.+|+.|||.+|+| |.|..+.|+.||||
T Consensus 130 lvS~F~S----------------------------------------redLIqALlASc~IP~y~g~~P~~~rG~~yVDG 169 (405)
T cd07223 130 IVTDFAT----------------------------------------RDELIQALICTLYFPFYCGIIPPEFRGERYIDG 169 (405)
T ss_pred EecCCCC----------------------------------------HHHHHHHHHHhccCccccCCCCceECCEEEEcC
Confidence 9887763 34599999999999999 99999999999999
Q ss_pred ccccCCcHH
Q 002472 775 AIVANNPTI 783 (918)
Q Consensus 775 Gl~~NnP~~ 783 (918)
|+.+|.|..
T Consensus 170 GvsnNLP~~ 178 (405)
T cd07223 170 ALSNNLPFS 178 (405)
T ss_pred cccccCCCc
Confidence 999999974
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-19 Score=166.30 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=113.2
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
..+-.+.+++.|.||+|+++. +|..+..+.+|+.|++++|+ ...+|..+..+++|+.|+++-|++..+|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 444556667777777777665 45566777777777777776 345566666777777777777777777777777777
Q ss_pred CcEEeccCCCCC--CCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCC
Q 002472 199 LEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGN 276 (918)
Q Consensus 199 L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N 276 (918)
|+.|||.+|++. .+|..|..++.|+.|+|+.|.+..+|..++++++|+.|.+.+|.+-.++.+++.++.|++|++.+|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 777777777776 667667667777777777777777777777777777777777777666666777777777777777
Q ss_pred CCCCCc
Q 002472 277 PLEFLP 282 (918)
Q Consensus 277 ~l~~l~ 282 (918)
+++.+|
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 777443
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.2e-19 Score=165.20 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=146.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcce
Q 002472 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKV 224 (918)
Q Consensus 145 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 224 (918)
+.++.+++.|.|++|+ ....|..+..+.+|+.|++++|+|+++|..++.++.|+.|+++-|++..+|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4567788899999998 34456667799999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc--ccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCc-CcCCCCCCcEEEccCCCCC
Q 002472 225 LIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIV 301 (918)
Q Consensus 225 L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~-~l~~l~~L~~L~L~~N~i~ 301 (918)
|||.+|++. .+|..|..++.|+.|+|++|.+.-++++++++++|+.|.+..|.+-.+| +++.++.|++|.+.+|.++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 999999998 8899999999999999999999888899999999999999999988777 7889999999999999998
Q ss_pred C-CcCcchhh
Q 002472 302 A-DENLRSVN 310 (918)
Q Consensus 302 ~-~~~l~~l~ 310 (918)
- ++.+..+.
T Consensus 187 vlppel~~l~ 196 (264)
T KOG0617|consen 187 VLPPELANLD 196 (264)
T ss_pred ecChhhhhhh
Confidence 6 55565543
No 50
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=99.68 E-value=1.2e-16 Score=154.64 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=101.1
Q ss_pred EEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCCchh
Q 002472 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (918)
Q Consensus 543 L~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~~~~ 622 (918)
|+|+|||+||++++|||++|+|+. +.+.||+|+|||+||++|++++- ..+
T Consensus 1 l~~~GGg~~~~~~~gvl~~l~~~~---~~~~~~~~~G~SaGa~~~~~~~p-----------------~~~---------- 50 (155)
T cd01819 1 LSFSGGGFRGMYHAGVLSALAERG---LLDCVTYLAGTSGGAWVAATLYP-----------------PSS---------- 50 (155)
T ss_pred CEEcCcHHHHHHHHHHHHHHHHhC---CccCCCEEEEEcHHHHHHHHHhC-----------------hhh----------
Confidence 689999999999999999999832 33689999999999999999970 000
Q ss_pred hhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCC
Q 002472 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (918)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~ 702 (918)
.|+.. ..+.+.+. ...+..+..| +..+++..++....
T Consensus 51 -------------------------~~~~~-~~~~~~~~---------------~~~~~~i~~T--~~~tG~~~~~~~~~ 87 (155)
T cd01819 51 -------------------------SLDNK-PRQSLEEA---------------LSGKLWVSFT--PVTAGENVLVSRFV 87 (155)
T ss_pred -------------------------hhhhh-hhhhhHHh---------------cCCCeEEEEE--EcCCCcEEEEeccc
Confidence 00000 01111110 1122334443 67888888877422
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccC------------CCce
Q 002472 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD------------DVFR 770 (918)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~------------~~~~ 770 (918)
++..+++|++||++.|++|+++.. ++..
T Consensus 88 ----------------------------------------~~~~~~~av~aS~s~P~~f~~v~~~~~~~~~~~~~~~g~~ 127 (155)
T cd01819 88 ----------------------------------------SKEELIRALFASGSWPSYFGLIPPAELYTSKSNLKEKGVR 127 (155)
T ss_pred ----------------------------------------cchHHHHHHhHHhhhhhhcCCcccccccccccccccCCeE
Confidence 133588999999999999998755 8999
Q ss_pred eeecccccCCcHHHHHHHHHHhCCCCCCCEEEE
Q 002472 771 WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVS 803 (918)
Q Consensus 771 ~vDGGl~~NnP~~~al~ea~~~~~~~~~~~vvS 803 (918)
|+|||+.+|+|+... +-+.+..+++||
T Consensus 128 lVDGG~~~~iP~~~~------~~~~r~~~viis 154 (155)
T cd01819 128 LVDGGVSNNLPAPVL------LRPGRGVTLTIS 154 (155)
T ss_pred EeccceecCcCCccc------ccCCCCCeEEeC
Confidence 999999999999876 345666777776
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.68 E-value=3.2e-18 Score=172.92 Aligned_cols=178 Identities=18% Similarity=0.216 Sum_probs=158.6
Q ss_pred hhHHHHhhhccCCCceeecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChH
Q 002472 346 LASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPE 424 (918)
Q Consensus 346 l~~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~ 424 (918)
..|.|.+++...+.+.....--..+|-|.+|.-+..+++.-+|||++.+|..++..+ +.+++.|...+|+.+|.+++..
T Consensus 221 ~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~ 300 (526)
T COG5064 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK 300 (526)
T ss_pred hHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc
Confidence 467788877665433211111146777888877889999999999999999988888 9999999999999999998888
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccC
Q 002472 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG 504 (918)
Q Consensus 425 ~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~ 504 (918)
++.++++.+++++.++|.+.+.++.+|+++.+..||.+.+..++++|+|+++||+.|+..|+|+|++++++|+|++++.+
T Consensus 301 iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ 380 (526)
T COG5064 301 IQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS 380 (526)
T ss_pred ccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhccc
Q 002472 505 PEPRVNKAAARALAILGEN 523 (918)
Q Consensus 505 ~~~~i~~~a~~al~~l~~~ 523 (918)
.+..++||||||+++....
T Consensus 381 ae~k~kKEACWAisNatsg 399 (526)
T COG5064 381 AEYKIKKEACWAISNATSG 399 (526)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 9999999999999988533
No 52
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=168.46 Aligned_cols=211 Identities=16% Similarity=0.284 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHhccch---HHHHHhhcCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHH
Q 002472 508 RVNKAAARALAILGENE---SLRRAIRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGG 584 (918)
Q Consensus 508 ~i~~~a~~al~~l~~~~---~~~~~~~~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Ga 584 (918)
++..|...++..+...+ +.+-.+-.+....-|.++|+|+|||..|++|+||++.|.+ -.-.+.+|+|+|+||
T Consensus 139 ey~~e~~~~L~~l~~~~ls~~~k~~ff~~~r~~~GrTAL~LsGG~tFGlfH~GVlrtL~e-----~dLlP~IIsGsS~Ga 213 (543)
T KOG2214|consen 139 EYLTEVLMVLDSLNTSDLSLDEKLGFFQRTRHNFGRTALILSGGATFGLFHIGVLRTLLE-----QDLLPNIISGSSAGA 213 (543)
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhCceEEEecCCchhhhhHHHHHHHHHH-----ccccchhhcCCchhH
Confidence 44555555565555111 1111111233345689999999999999999999999988 445578899999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhh---ccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHH
Q 002472 585 MLAIALAVKLMTLDQCEEIYKNLG---KLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEM 661 (918)
Q Consensus 585 iia~~l~~~~~s~~~~~~~y~~~~---~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~ 661 (918)
++|+.++.. +-+|+..++...- ..+|..+. .+|...+.+++. .|..+|...+...++++
T Consensus 214 ivAsl~~v~--~~eEl~~Ll~~~~~~~~~if~dd~------~n~~~~ikr~~~----------~G~~~Di~~l~~~~~~~ 275 (543)
T KOG2214|consen 214 IVASLVGVR--SNEELKQLLTNFLHSLFNIFQDDL------GNLLTIIKRYFT----------QGALFDISHLACVMKKR 275 (543)
T ss_pred HHHHHHhhc--chHHHHHHhccchHhhhhhhcCcc------hhHHHHHHHHHh----------cchHHHHHHHHHHHHHH
Confidence 999999875 7899998887643 33455533 267777777664 57889999999999999
Q ss_pred hcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccC
Q 002472 662 CADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIG 741 (918)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (918)
. ++.+|.+++...+|++-+++......+.|.+.+..++|
T Consensus 276 ~----~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaP------------------------------------- 314 (543)
T KOG2214|consen 276 L----GNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAP------------------------------------- 314 (543)
T ss_pred h----cchhHHHHHHhhCceEEEEECccccCCChhHhhccCCC-------------------------------------
Confidence 9 67899999999999998887777778889998887766
Q ss_pred CCchhHHHHHHhhccCCCCCCCcc----------------CCCceeeecccccCCcHHH
Q 002472 742 SCKHQVWQAIRASSAAPYYLDDFS----------------DDVFRWQDGAIVANNPTIF 784 (918)
Q Consensus 742 ~~~~~l~~a~rASsAaP~~F~p~~----------------~~~~~~vDGGl~~NnP~~~ 784 (918)
|+.||.|+-||||.|++|++.. .....|.||.+...+|...
T Consensus 315 --nVLIWSAV~aScs~pgif~~~~Ll~Kd~t~ei~p~~~~~~~~r~~dgsl~~d~P~sr 371 (543)
T KOG2214|consen 315 --NVLIWSAVCASCSVPGIFESTPLLAKDLTNEIEPFIVTFSEPRFMDGSLDNDLPYSR 371 (543)
T ss_pred --ceehhHHHHHhcccccccCccHHHHhhccCcEeeccCCccchhhccCcccccCcHHH
Confidence 7889999999999999998632 1234799999999999854
No 53
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=177.55 Aligned_cols=185 Identities=26% Similarity=0.397 Sum_probs=126.4
Q ss_pred cceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCC
Q 002472 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (918)
Q Consensus 539 ~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~ 618 (918)
....|+|.|||+||++|+|||++||| -+..+|+|+|||+||++++++|-. .+.-.+ |.+ +++.+.+
T Consensus 838 naIgLVLGGGGARG~ahiGvl~ALeE-----~GIPvD~VGGTSIGafiGaLYA~e-~d~~~v---~~r-ak~f~~~---- 903 (1158)
T KOG2968|consen 838 NAIGLVLGGGGARGAAHIGVLQALEE-----AGIPVDMVGGTSIGAFIGALYAEE-RDLVPV---FGR-AKKFAGK---- 903 (1158)
T ss_pred CeEEEEecCcchhhhhHHHHHHHHHH-----cCCCeeeeccccHHHhhhhhhhcc-CcchHH---HHH-HHHHHHH----
Confidence 34569999999999999999999999 677899999999999999999843 233222 221 1112211
Q ss_pred CchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEe
Q 002472 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIF 698 (918)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f 698 (918)
...-|+..++-.|. ..+.|++..+..-+.+.| ++..+++...+. ++++| |++.....+.
T Consensus 904 --mssiw~~llDLTyP----------~tsmftGh~FNrsI~~~F----gd~~IEDlWi~y---fciTT--dIt~S~mriH 962 (1158)
T KOG2968|consen 904 --MSSIWRLLLDLTYP----------ITSMFTGHEFNRSIHSTF----GDVLIEDLWIPY---FCITT--DITSSEMRVH 962 (1158)
T ss_pred --HHHHHHHHHhcccc----------chhccchhhhhhHHHHHh----cccchhhhhhee---eeccc--ccchhhhhhh
Confidence 01123332222221 235677778888999999 556667655432 23333 5554443333
Q ss_pred ccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccC--CCceeeeccc
Q 002472 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAI 776 (918)
Q Consensus 699 ~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~--~~~~~vDGGl 776 (918)
+ +..+|.-+|||++.-+|.||..- +|...+|||.
T Consensus 963 ~--------------------------------------------~G~~WrYvRASMsLaGylPPlcdp~dGhlLlDGGY 998 (1158)
T KOG2968|consen 963 R--------------------------------------------NGSLWRYVRASMSLAGYLPPLCDPKDGHLLLDGGY 998 (1158)
T ss_pred c--------------------------------------------CCchHHHHHhhccccccCCCCCCCCCCCEEecccc
Confidence 3 55699999999999999999876 7889999999
Q ss_pred ccCCcHHHHHHHHHHhCCCCCCCEEEEECCCCCC
Q 002472 777 VANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVP 810 (918)
Q Consensus 777 ~~NnP~~~al~ea~~~~~~~~~~~vvSlGTG~~~ 810 (918)
.+|.|++++... . ..+|+-|-.|+.-
T Consensus 999 vnNlPadvmrsl----G----a~~iiAiDVGS~d 1024 (1158)
T KOG2968|consen 999 VNNLPADVMRSL----G----AKVIIAIDVGSQD 1024 (1158)
T ss_pred cccCcHHHHHhc----C----CcEEEEEeccCcc
Confidence 999999874432 2 2356666666543
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.5e-17 Score=180.91 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=160.2
Q ss_pred hhhHHHHhhhccCCCceeecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCCh
Q 002472 345 LLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP 423 (918)
Q Consensus 345 ~l~~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~ 423 (918)
...|.|.+++........+......+|.|..|..+.+.++..++||+|.+|..++... +.+++.|+++.++.+|.+...
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 3678888887666432222222356888988888999999999999999999888888 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhc-CCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccc
Q 002472 424 EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT 502 (918)
Q Consensus 424 ~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~-~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll 502 (918)
.++.++++++++++.++|.++|.|+.+|++|.|..|+. +....++++|+|+++||+.|+..|+|+|++++++|.|++++
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999999999999999999999999999999999 66777999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHhcc
Q 002472 503 VGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 503 ~~~~~~i~~~a~~al~~l~~ 522 (918)
+..+++++|||+||++++..
T Consensus 374 ~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hccchHHHHHHHHHHHhhcc
Confidence 99999999999999998853
No 55
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=99.67 E-value=1.6e-15 Score=176.22 Aligned_cols=220 Identities=20% Similarity=0.189 Sum_probs=134.4
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhcCC------------------------------CCccccceeeecChHHHHHHHHH
Q 002472 542 ILSMDGGGMKGLATVQILKEIEKGTGK------------------------------RIHELFDLVCGTSTGGMLAIALA 591 (918)
Q Consensus 542 iL~LdGGG~rG~~~~~vL~~Le~~~~~------------------------------~~~~~fD~i~GTS~Gaiia~~l~ 591 (918)
.|+|.|||.|++|+.||+++|.+.... +....||+|+|||+|||+|+++|
T Consensus 5 alVl~GG~slA~y~~GV~~ei~~l~~~~~~~~~~~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA 84 (739)
T TIGR03607 5 ALVMYGGVSLAVYMHGVTKEINRLVRASRAYHGYPDEASAGTEAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVLLA 84 (739)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHHhhhhcccccccccccccchhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHHHH
Confidence 599999999999999999999774331 23688999999999999999999
Q ss_pred c---CCCCHHHHHHHHHHhhc--cccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCC
Q 002472 592 V---KLMTLDQCEEIYKNLGK--LVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADED 666 (918)
Q Consensus 592 ~---~~~s~~~~~~~y~~~~~--~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 666 (918)
. .+++.+++.++|.+... +.+..... .|. + ..-..+.|+++.++++|++.+....
T Consensus 85 ~~~~~g~~~~~L~~~W~~~~d~~~lLd~~~~------~~~-------------~-~~~~~sLl~G~~l~~~L~~~L~~~~ 144 (739)
T TIGR03607 85 YALAYGADLDPLRDLWLELADIDALLRPDAK------AWP-------------R-LRRPGSLLDGEYFLPLLLDALAAMV 144 (739)
T ss_pred cccccCCCHHHHHHHHHhcccHHhhcChhhh------ccc-------------c-ccCCccccccHHHHHHHHHHHHHhC
Confidence 6 25799999999887643 22211000 000 0 0012345778899999998886542
Q ss_pred --CCchhccccCC--CCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCC
Q 002472 667 --GDLLIESSVKN--IPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGS 742 (918)
Q Consensus 667 --~~~~~~~~~~~--~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (918)
++..+.+.... ...++|++| |.......++.++...-... ++...-.+.-.... +-....+...
T Consensus 145 ~~~~~~~~~lp~~~~~~dL~VTaT--Dl~G~~~~l~dd~~~~~~e~-------~hr~~f~F~~~~~~---~~~~~d~~~~ 212 (739)
T TIGR03607 145 RAGPAGPSLLPTGTRPLDLFVTAT--DLRGRSTRLFDDDGTVVEER-------EHRGVFRFTEAGRA---GGRLSDFDAA 212 (739)
T ss_pred CCCCCCccccccCCCCccEEEEEE--cCCCcEEEeecCCCcccccc-------cccceeeeecccCC---CCCCcccccc
Confidence 22233433321 235556555 66333334444332111100 00000000000000 0000112222
Q ss_pred CchhHHHHHHhhccCCCCCCCccC-----------------------------------CCceeeecccccCCcHHHHHH
Q 002472 743 CKHQVWQAIRASSAAPYYLDDFSD-----------------------------------DVFRWQDGAIVANNPTIFAIR 787 (918)
Q Consensus 743 ~~~~l~~a~rASsAaP~~F~p~~~-----------------------------------~~~~~vDGGl~~NnP~~~al~ 787 (918)
+...|..|+||||+.|++|+|+++ .+..|+|||+..|-|...++.
T Consensus 213 ~~~~lA~AaRaSaSfP~aF~Pv~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDGGvldN~Pl~pal~ 292 (739)
T TIGR03607 213 NAPRLAFAARATASFPGAFPPSRLAEIDDVLARRFLPWGGRDAFLHPDFPDYAELGTTPRPRYVVDGGVLDNRPFAPALE 292 (739)
T ss_pred ccHHHHHHHHHhcCCCcccCceehhhhhHHHHhccCCCCccccccccccccccccCCCccceEEeecccccCcchHHHHH
Confidence 347899999999999999999842 125799999999999999999
Q ss_pred HHHHhC
Q 002472 788 EAQLLW 793 (918)
Q Consensus 788 ea~~~~ 793 (918)
+.....
T Consensus 293 ~i~~~~ 298 (739)
T TIGR03607 293 AIRARP 298 (739)
T ss_pred HHHhcC
Confidence 855443
No 56
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.1e-16 Score=186.33 Aligned_cols=224 Identities=22% Similarity=0.240 Sum_probs=173.0
Q ss_pred CCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEec
Q 002472 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 204 (918)
++|+.|+|++|+++. +|..+. ++|+.|++++|+ +. .+|..+ ..+|+.|+|++|.++.+|..+. .+|++|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~-Lt-sLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQ-LT-SIPATL--PDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCc-cc-cCChhh--hccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 579999999999986 565543 589999999998 44 345443 3579999999999999997764 58999999
Q ss_pred cCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCcCc
Q 002472 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (918)
Q Consensus 205 ~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~~l 284 (918)
++|+|+.+|..+. ++|+.|+|++|+|+.+|..+. ++|+.|++++|.++.++..+ .++|+.|++++|.++.+|..
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChh
Confidence 9999999987664 589999999999999887654 57999999999998876544 36899999999999987742
Q ss_pred CCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCCCchhhHHHHhhhccCCCce-ee
Q 002472 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (918)
Q Consensus 285 ~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~~l~~~L~~ll~l~~N~l-~i 363 (918)
. .++|+.|+|++|+|+..+. . + .++|+.++++.|.++.+++.+.. .+ +.+++++|.+ .+
T Consensus 344 l-~~sL~~L~Ls~N~L~~LP~--~----l-p~~L~~LdLs~N~Lt~LP~~l~~-----------sL-~~LdLs~N~L~~L 403 (754)
T PRK15370 344 L-PPELQVLDVSKNQITVLPE--T----L-PPTITTLDVSRNALTNLPENLPA-----------AL-QIMQASRNNLVRL 403 (754)
T ss_pred h-cCcccEEECCCCCCCcCCh--h----h-cCCcCEEECCCCcCCCCCHhHHH-----------HH-HHHhhccCCcccC
Confidence 2 3789999999999886432 1 1 25788899999999887654421 12 2346677776 45
Q ss_pred cccc----cccCcccEEECcCCcc
Q 002472 364 GKDE----NAVRQLISMISSDNRH 383 (918)
Q Consensus 364 p~~~----~~L~~L~~L~ls~N~~ 383 (918)
|..+ +.++++..|++.+|+.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCc
Confidence 5433 4458889999988873
No 57
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.1e-15 Score=178.00 Aligned_cols=177 Identities=23% Similarity=0.208 Sum_probs=138.7
Q ss_pred CccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEecc
Q 002472 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLD 205 (918)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 205 (918)
+-..|+|++|+++. +|..+. ++|+.|++.+|+ +.. +|. .+++|++|+|++|+|+.+|.. .++|++|+|+
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~-Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCc-CCC-CCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 35688999999985 777665 489999999998 343 444 358999999999999999853 4689999999
Q ss_pred CCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCcCcC
Q 002472 206 NNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEIL 285 (918)
Q Consensus 206 ~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~~l~ 285 (918)
+|.++.+|..+ .+|+.|+|++|+++.+|.. +++|+.|+|++|+|++++.. ..+|+.|++++|.++.+|.+.
T Consensus 271 ~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 271 SNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred CCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCccccccccc
Confidence 99999888633 5788999999999999863 47899999999999987642 245778889999998777532
Q ss_pred CCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhh
Q 002472 286 PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (918)
Q Consensus 286 ~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (918)
.+|+.|+|++|+|+.++.+. .++..+++..|.++.++
T Consensus 342 --~~Lq~LdLS~N~Ls~LP~lp--------~~L~~L~Ls~N~L~~LP 378 (788)
T PRK15387 342 --SGLQELSVSDNQLASLPTLP--------SELYKLWAYNNRLTSLP 378 (788)
T ss_pred --cccceEecCCCccCCCCCCC--------cccceehhhccccccCc
Confidence 57889999999988755432 24555667777776644
No 58
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.9e-15 Score=179.58 Aligned_cols=221 Identities=17% Similarity=0.173 Sum_probs=171.3
Q ss_pred CCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEec
Q 002472 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 204 (918)
.+...|++++++++. +|..+. ++|+.|+|++|+ +.. +|..+ ..+|++|++++|+++.+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~-Lts-LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNE-LKS-LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCC-CCc-CChhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 456789999998886 565553 589999999998 444 45443 3589999999999999997654 47999999
Q ss_pred cCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCcCc
Q 002472 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (918)
Q Consensus 205 ~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~~l 284 (918)
++|.++.+|..+. .+|+.|++++|+|+.+|..+. ++|+.|+|++|+|+.++..+. ++|+.|++++|.++.+|..
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc
Confidence 9999999997764 589999999999999998764 589999999999998775543 4799999999999987742
Q ss_pred CCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCCCchhhHHHHhhhccCCCce-ee
Q 002472 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (918)
Q Consensus 285 ~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~~l~~~L~~ll~l~~N~l-~i 363 (918)
. .++|+.|++++|.+++.+. . + .++|+.++++.|++..++..+. .+| ..+++++|.+ .+
T Consensus 323 l-~~sL~~L~Ls~N~Lt~LP~--~----l-~~sL~~L~Ls~N~L~~LP~~lp--~~L----------~~LdLs~N~Lt~L 382 (754)
T PRK15370 323 L-PPGLKTLEAGENALTSLPA--S----L-PPELQVLDVSKNQITVLPETLP--PTI----------TTLDVSRNALTNL 382 (754)
T ss_pred c-cccceeccccCCccccCCh--h----h-cCcccEEECCCCCCCcCChhhc--CCc----------CEEECCCCcCCCC
Confidence 2 3689999999999987532 1 1 2578899999999886654331 122 1246777776 66
Q ss_pred cccccccCcccEEECcCCc
Q 002472 364 GKDENAVRQLISMISSDNR 382 (918)
Q Consensus 364 p~~~~~L~~L~~L~ls~N~ 382 (918)
|..+. ..|+.|++++|.
T Consensus 383 P~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 383 PENLP--AALQIMQASRNN 399 (754)
T ss_pred CHhHH--HHHHHHhhccCC
Confidence 66553 368888998886
No 59
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=5.6e-17 Score=184.76 Aligned_cols=249 Identities=21% Similarity=0.199 Sum_probs=145.1
Q ss_pred CCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEe
Q 002472 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (918)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 203 (918)
-++|+.|+.++|.++...+. ..-.+|+++++++|+ + ..+|+.+..+.+|+.|+..+|+++.+|..+....+|+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~-l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN-L-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhh-h-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHH
Confidence 35667777777776643221 123578889999888 3 3455888888999999999999988888888888899999
Q ss_pred ccCCCCCCCcccccCCcCcceeecccccccccchhccC-CC-CCcEEEeecCCCCCCcc-cccCCCCCCEEEeeCCCCC-
Q 002472 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRE-CV-GLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLE- 279 (918)
Q Consensus 204 L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~-l~-~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~L~~N~l~- 279 (918)
+.+|.+..+|+...+++.|++|+|..|+|..+|..+-. +. .|+.|+.+.|++...+. +=..++.|+.|.+.+|.++
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 99999888888888888899999998888887764322 11 24444444444443331 1122334444444455444
Q ss_pred -CCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCCCc--------hhhHHH
Q 002472 280 -FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHP--------LLASAL 350 (918)
Q Consensus 280 -~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~~~--------~l~~~L 350 (918)
.+|-+.+..+|+.|+|++|++..+++-. ...++.|+.+++++|.++.++..+.++..|+.+ ..+ .+
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~----~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASK----LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHH----HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh
Confidence 3444444444555555555444432211 112344444444444444444333333222111 011 00
Q ss_pred H-----hhhccCCCce---eecccccccCcccEEECcCCc
Q 002472 351 A-----KIMQDQENRV---VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 351 ~-----~ll~l~~N~l---~ip~~~~~L~~L~~L~ls~N~ 382 (918)
. +.++++.|.+ .++.... -|+|++|++++|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 0 2356676665 2222221 2788888888887
No 60
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=2.8e-16 Score=179.16 Aligned_cols=252 Identities=19% Similarity=0.165 Sum_probs=197.3
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
..+..+.+|+.|....|+++... -.-++|+.|+.++|.+ ....+. ..-.+|++++++.|+++.+|+.++.+.+
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l-~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPL-TTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcc-eeeccc--cccccceeeecchhhhhcchHHHHhccc
Confidence 45667888889998888877531 2347899999999983 322221 2456899999999999999988999999
Q ss_pred CcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCccc-ccCCCC-CCEEEeeCC
Q 002472 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAE-LKILRLFGN 276 (918)
Q Consensus 199 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~-l~~l~~-L~~L~L~~N 276 (918)
|+.|+..+|+++.+|..+..+++|+.|++..|.+..+|.....++.|++|+|..|.|..+++. +..+.. |+.|+.+.|
T Consensus 266 le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 266 LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999988864 444443 888999999
Q ss_pred CCCCCcCcC--CCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhh-hhhh--------ccCCCCch
Q 002472 277 PLEFLPEIL--PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFR--------FSSCHHPL 345 (918)
Q Consensus 277 ~l~~l~~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~l~~--------l~~l~~~~ 345 (918)
.+...|... ..+.|+.|++.+|.++.. -+++.....+|+.++++.|.+..++. .+.+ ++.++...
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCccccc----chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 999888544 567899999999999863 11223347899999999999988774 3333 33333333
Q ss_pred hhHHHHhh-----hccCCCce-eecccccccCcccEEECcCCc
Q 002472 346 LASALAKI-----MQDQENRV-VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 346 l~~~L~~l-----l~l~~N~l-~ip~~~~~L~~L~~L~ls~N~ 382 (918)
++..+.++ +...+|++ .+| ++..++.|+.+|+|.|.
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence 33333222 45567888 555 88899999999999886
No 61
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=5.8e-14 Score=178.74 Aligned_cols=102 Identities=25% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCC-CcccCcccCCCCCCcEEe
Q 002472 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG-LSALPVDLTRLPVLEKLY 203 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~ 203 (918)
.+|+.|+|++|++.. ++..+..+++|+.|+|++|. ....+|. +..+++|++|+|++|. +..+|..+.++++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCccccc-cccccccCCCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 345555555554433 33444444555555554443 1222222 3344455555554442 334444444445555555
Q ss_pred ccCC-CCCCCcccccCCcCcceeecccc
Q 002472 204 LDNN-KLSTLPPELGAMKNLKVLIVDNN 230 (918)
Q Consensus 204 L~~n-~l~~lp~~l~~l~~L~~L~Ls~N 230 (918)
+++| .++.+|..+ ++++|+.|++++|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 5443 233444332 3444444444433
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.50 E-value=1.6e-15 Score=164.37 Aligned_cols=176 Identities=24% Similarity=0.270 Sum_probs=153.9
Q ss_pred CCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEe
Q 002472 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (918)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 203 (918)
+..-...||+.|++.. +|..+..+-.|+.+.|+.|. ...+|..+.++..|.+|+|+.|+++.+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~--~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNC--IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhcc--ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 4445678889998876 78888888889999999987 56678888899999999999999999998888776 99999
Q ss_pred ccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCc-
Q 002472 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP- 282 (918)
Q Consensus 204 L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~- 282 (918)
+++|+++.+|+.++.+..|..||.+.|.+..+|..++++.+|+.|++..|++..+++++..| .|..||+++|++..+|
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 99999999999999889999999999999999999999999999999999998888887744 6889999999999888
Q ss_pred CcCCCCCCcEEEccCCCCCCCc
Q 002472 283 EILPLLKLRHLSLANIRIVADE 304 (918)
Q Consensus 283 ~l~~l~~L~~L~L~~N~i~~~~ 304 (918)
.|.+++.|++|-|.+|.+..++
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 6889999999999999998753
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=7.6e-15 Score=152.66 Aligned_cols=249 Identities=18% Similarity=0.183 Sum_probs=144.4
Q ss_pred CccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccC-CCCcccCcc-cCCCCCCcEEe
Q 002472 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG-LGLSALPVD-LTRLPVLEKLY 203 (918)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~ 203 (918)
.-.+|+|..|+|+.+.+.+|+.+++||.|||++|. +..+.|..|.++.+|..|-+.+ |+|+.+|.. |++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 35566667777776666667777777777777776 5666666676776666665544 667766654 56666677777
Q ss_pred ccCCCCCCCc-ccccCCcCcceeecccccccccch-hccCCCCCcEEEeecCCCCCC-------------cccccCCC--
Q 002472 204 LDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRP-------------LLDFRAMA-- 266 (918)
Q Consensus 204 L~~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~-------------~~~l~~l~-- 266 (918)
+.-|++..++ ..|..+++|..|.+..|.+..++. .+..+..++.+.+..|.+... +-.++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 7666666433 456666677777777776666655 556666666666655552110 00011110
Q ss_pred --------------------CCCEE----EeeCCCCCCCc--CcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCcc
Q 002472 267 --------------------ELKIL----RLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSY 320 (918)
Q Consensus 267 --------------------~L~~L----~L~~N~l~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~ 320 (918)
.++.+ ....+.....| .|..+++|++|+|++|+|+....-. +-.+..++.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~e 302 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQE 302 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh----hcchhhhhh
Confidence 01111 11111222223 2567778888888888877632111 123556677
Q ss_pred ccccccccchhhh-hhhhccCCCCchhhHHHHhhhccCCCce--eecccccccCcccEEECcCCcchhHHHH
Q 002472 321 FGASRHKLSAFFS-LIFRFSSCHHPLLASALAKIMQDQENRV--VVGKDENAVRQLISMISSDNRHVVEQAC 389 (918)
Q Consensus 321 l~l~~n~l~~~~~-~l~~l~~l~~~~l~~~L~~ll~l~~N~l--~ip~~~~~L~~L~~L~ls~N~~v~e~a~ 389 (918)
+.+..|++..+.. .+.+++.|+ .+++.+|++ ..|..+..+..|..|.+-.|+.-+..-+
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~----------tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLK----------TLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hhcCcchHHHHHHHhhhccccce----------eeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 7777777766554 344555552 246677776 3444456677777777777775554443
No 64
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=3.2e-15 Score=155.37 Aligned_cols=214 Identities=17% Similarity=0.154 Sum_probs=149.4
Q ss_pred eeehhhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCC-CCCCCCCccccccCCCCccEEEccCCCCcccC-cc
Q 002472 115 GVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLST-SGPGNNMGSGFCDHWKTVTAVSLCGLGLSALP-VD 192 (918)
Q Consensus 115 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~ 192 (918)
.+...+|+.+++|++|||++|+|+.+-|.+|..+.+|..|-+.+ |+ +.......|++|..|+.|.+.-|++.-++ ..
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 45568999999999999999999999999999999998887777 66 77888889999999999999999999555 45
Q ss_pred cCCCCCCcEEeccCCCCCCCcc-cccCCcCcceeeccccccc---cc----------chhccCCCCC-------------
Q 002472 193 LTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLV---CV----------PVELRECVGL------------- 245 (918)
Q Consensus 193 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~---~l----------p~~l~~l~~L------------- 245 (918)
+..+++|..|.+.+|.+..++. .+..+.+++++.+..|.+- .+ |..++.....
T Consensus 160 l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhccc
Confidence 8899999999999999998886 7888999999988887732 11 1122211111
Q ss_pred ---------cEE----EeecCCCCCCc-ccccCCCCCCEEEeeCCCCCCCc--CcCCCCCCcEEEccCCCCCCCcCcchh
Q 002472 246 ---------VEL----SLEHNRLVRPL-LDFRAMAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSV 309 (918)
Q Consensus 246 ---------~~L----~L~~N~l~~~~-~~l~~l~~L~~L~L~~N~l~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l 309 (918)
+.+ ....+.....| ..|..|++|++|+|++|.|+.+. .|..+..+++|.|..|+|.....
T Consensus 240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~---- 315 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS---- 315 (498)
T ss_pred chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH----
Confidence 111 11111111111 12666777777777777777554 46666677777777777654311
Q ss_pred hhhhcccCCccccccccccchhhh
Q 002472 310 NVQIEMENNSYFGASRHKLSAFFS 333 (918)
Q Consensus 310 ~~~~~l~~l~~l~l~~n~l~~~~~ 333 (918)
..+..+++|+.+++.+|+++.+.+
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred HhhhccccceeeeecCCeeEEEec
Confidence 113346666667777777665543
No 65
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=1.7e-12 Score=165.42 Aligned_cols=254 Identities=16% Similarity=0.140 Sum_probs=175.0
Q ss_pred eeeehhhcCCCCCccEEEeecCCC------CCcCcccccCCC-CCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCC
Q 002472 114 VGVEMRVVKRREPLRAVVLTKGVG------SGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGL 186 (918)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~L~~n~l------~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 186 (918)
..+...+|..+++|+.|.+..+.. ...+|..|..++ +|+.|++.+|. ...+|..+ .+.+|+.|+|.+|++
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccc
Confidence 345567899999999999976642 334677777764 69999999987 45567666 678999999999999
Q ss_pred cccCcccCCCCCCcEEeccCCC-CCCCcccccCCcCcceeeccccc-ccccchhccCCCCCcEEEeecC-CCCCCccccc
Q 002472 187 SALPVDLTRLPVLEKLYLDNNK-LSTLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHN-RLVRPLLDFR 263 (918)
Q Consensus 187 ~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N-~l~~~~~~l~ 263 (918)
..++..+..+++|++|+|++|. ++.+| .+..+++|++|+|++|. +..+|..+.++++|+.|++++| .+..++..+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 9999889999999999999875 56777 58889999999999875 6699999999999999999986 455555444
Q ss_pred CCCCCCEEEeeCCCC-CCCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchhhhhhhhccCCC
Q 002472 264 AMAELKILRLFGNPL-EFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCH 342 (918)
Q Consensus 264 ~l~~L~~L~L~~N~l-~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~~l~~l~~l~ 342 (918)
++++|+.|++++|.. ..+|.+ ..+|+.|++++|.+...+... .+++|..+++..+....+...+..+..+.
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNL------RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccc------cccccccccccccchhhccccccccchhh
Confidence 789999999998853 355543 468999999999987644321 24555555554322111110000000000
Q ss_pred CchhhHHHHhhhccCCCce--eecccccccCcccEEECcCCc
Q 002472 343 HPLLASALAKIMQDQENRV--VVGKDENAVRQLISMISSDNR 382 (918)
Q Consensus 343 ~~~l~~~L~~ll~l~~N~l--~ip~~~~~L~~L~~L~ls~N~ 382 (918)
. ..+..|. .+++++|.. .+|.+++.+++|+.|+++++.
T Consensus 774 ~-~~~~sL~-~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 774 T-MLSPSLT-RLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred h-hccccch-heeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 0 0001111 124444432 566666677777777776644
No 66
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=7.4e-14 Score=153.99 Aligned_cols=211 Identities=26% Similarity=0.277 Sum_probs=110.5
Q ss_pred hcCCCCCccEEEeecCCCCC------cCcccccCCCCCCEEeCCCCCCCCCCccccccCCCC---ccEEEccCCCCc---
Q 002472 120 VVKRREPLRAVVLTKGVGSG------HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKT---VTAVSLCGLGLS--- 187 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~---L~~L~L~~n~l~--- 187 (918)
.+...++++.|+++++.+.+ .++..+..+++|+.|++++|. +....+..+..+.+ |++|++++|+++
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHH
Confidence 44455666666666665542 123345556666666666666 33233333333333 666666666665
Q ss_pred --ccCcccCCC-CCCcEEeccCCCCC-----CCcccccCCcCcceeeccccccc-----ccchhccCCCCCcEEEeecCC
Q 002472 188 --ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNR 254 (918)
Q Consensus 188 --~lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~L~~N~ 254 (918)
.+...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|.++ .++..+..+++|++|++++|.
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 222334445 66666666666666 22334455566666666666665 233444455666666666666
Q ss_pred CCCCc-----ccccCCCCCCEEEeeCCCCCC--CcCcC-----CCCCCcEEEccCCCCCCCcCcchhhhhhcccCCcccc
Q 002472 255 LVRPL-----LDFRAMAELKILRLFGNPLEF--LPEIL-----PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFG 322 (918)
Q Consensus 255 l~~~~-----~~l~~l~~L~~L~L~~N~l~~--l~~l~-----~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~ 322 (918)
+++.. ..+..+++|++|++++|.++. +..+. ..+.|+.|++++|.++......-......++++++++
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 64332 124556666666666666652 11111 2356666666666665321110001111234566666
Q ss_pred ccccccchh
Q 002472 323 ASRHKLSAF 331 (918)
Q Consensus 323 l~~n~l~~~ 331 (918)
++.|.++..
T Consensus 285 l~~N~l~~~ 293 (319)
T cd00116 285 LRGNKFGEE 293 (319)
T ss_pred CCCCCCcHH
Confidence 666666543
No 67
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.39 E-value=1.9e-12 Score=144.86 Aligned_cols=304 Identities=20% Similarity=0.250 Sum_probs=198.3
Q ss_pred CCCCCcceEEEecCCCchHHHHHHHHHHHHHhcC--------CCCccccce-eeecChHHHHHHHHH------cCCCCHH
Q 002472 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTG--------KRIHELFDL-VCGTSTGGMLAIALA------VKLMTLD 598 (918)
Q Consensus 534 ~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~--------~~~~~~fD~-i~GTS~Gaiia~~l~------~~~~s~~ 598 (918)
+......++|+|||||+||+.+...+..++.++. .++.++||+ ++|+++|+++++|+- +.++...
T Consensus 29 ~~~~~~~~~lsld~gg~~gi~~~~s~~~~~~~l~~~~g~~~~~~~a~~fDv~~~g~~~~gl~~aml~a~~~~~~P~~~a~ 108 (503)
T KOG0513|consen 29 PSYGGLVTILSLDGGGSRGINQGVSLAYLELRLQNIDGDPSAARLADYFDVSIAGTNTGGLITAMLFAPNDCGRPRFGAT 108 (503)
T ss_pred ccccccceEEEEcCccceehhhhhhhcccHHHHHhccCChHhhHhhhccCceeeccCCchhhhhhhhccccccCcccccc
Confidence 3445678999999999999999999999887543 357899999 999999999999994 3456677
Q ss_pred HH-HHHHHHhhccccCCCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCH------HHHHHHHHHHhcCCCCCchh
Q 002472 599 QC-EEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSA------DQFERLLKEMCADEDGDLLI 671 (918)
Q Consensus 599 ~~-~~~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~le~~l~~~~~~~~~~~~~ 671 (918)
++ ..++.+.+..+|............| ....+....+..|+. .+.....++.. ++..+
T Consensus 109 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~----g~t~L 173 (503)
T KOG0513|consen 109 DILWKFNLEKAPKLLEKFDDPNFIKGDL-----------NLALRILVSGDKYSGAEVLLTKYEIADAREVL----GNTKL 173 (503)
T ss_pred chhhhhhhcCCCcccccccccccccccc-----------ccceeeeecCccccceeecccccccchhhhhc----CCcee
Confidence 77 7778888888776542100000001 112233344555544 22222333333 55555
Q ss_pred ccccCCCCEEEEEEeeeccCCCcceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHH
Q 002472 672 ESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAI 751 (918)
Q Consensus 672 ~~~~~~~~~~~v~~t~~~~~~~~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 751 (918)
..+..+... .+...+.+.....|.+|..|....+. -...-+..+++.+
T Consensus 174 ~~tl~~~~~-~~~i~~ldl~~~~P~lf~~~~~~~~~-------------------------------~v~~~~~~~~~~c 221 (503)
T KOG0513|consen 174 HLTLTKENL-LVVIPCLDLKSLTPNLFSIYDALGTK-------------------------------IVPLLDFKAIDIC 221 (503)
T ss_pred eeeccCCCc-ceEEEeeccCcCCceeeeeecccccc-------------------------------chhhhhhhhhhhh
Confidence 555544322 34445578899999999988754320 0011267899999
Q ss_pred Hhh--ccCCCCCCC-ccC---CC------ceeeecc-cccCCcHHHHHHHHHHh---CCC----------CCCCEEEEEC
Q 002472 752 RAS--SAAPYYLDD-FSD---DV------FRWQDGA-IVANNPTIFAIREAQLL---WPD----------TRIDCLVSIG 805 (918)
Q Consensus 752 rAS--sAaP~~F~p-~~~---~~------~~~vDGG-l~~NnP~~~al~ea~~~---~~~----------~~~~~vvSlG 805 (918)
+++ +|+|.+|+| +.. ++ ..++||| +..|||...|+.+..+. +|. ....+|.|+|
T Consensus 222 ~~t~~sa~~~~f~~~~~~~~~Dg~~~~~~~~~~~~g~~~m~n~t~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lv~~~G 301 (503)
T KOG0513|consen 222 IDTYGSAAPTIFPPILGFPSEDGQGIKTVCVLLDGGDIAMNNPTLHAITHVTANKRPFPPLLGLFRYRLRVDDNLVLSDG 301 (503)
T ss_pred hccccccCccccCcccccccccccccceeeEEecchhhhccCchHhhhhhhhhhcccCCcccccccccccccceEEEecC
Confidence 999 999999999 543 22 3489999 99999999999876422 221 1123689999
Q ss_pred CCCCCCc--------cCCCCcccccccc-------eeee--eccchhHHH----HHHHHHCCCCC-CCCeEEeCCCCchh
Q 002472 806 CGSVPTK--------TRRGGWRYLDTGQ-------VLIE--SACSVDRAE----EALSTLLPMLP-EIQYYRFNPGSISV 863 (918)
Q Consensus 806 TG~~~~~--------~~~~~~~~~~~~~-------~l~~--~~~~~~~~~----~~~~~~~~~~~-~~~YfR~np~~~~~ 863 (918)
+|..... -....|+++.|.. +..+ ...+.+.++ +.....+..+. +..|.|++-.+...
T Consensus 302 ~G~~~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~~s~d~v~~~y~~~k~~~F~~~r~~~~~~~Ie~~~~~~ 381 (503)
T KOG0513|consen 302 GGIPIIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALDGSSDEVDRMYLQMKDVVFDGLRSEYNYVRIECAIDRL 381 (503)
T ss_pred CCChhHHHHHhHHHhcccccccccccccccCcCceeehhhhhcccHHHHHHHHHHHhHHhhhcccCCCCccchhhhhhcc
Confidence 9987111 1146788888876 5555 455677777 55555555544 48999997544432
Q ss_pred hhhhcccccceeecccccccccccccccccccccc
Q 002472 864 MFSLLFFSFCCYRGTSCHPQINSIPLDLNIDFLLP 898 (918)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (918)
-+. .|..+-...+.||..+..
T Consensus 382 -------------~G~-~~~~di~~~~~nl~~~~~ 402 (503)
T KOG0513|consen 382 -------------FGD-APSMDIDGIRLNLTGLLV 402 (503)
T ss_pred -------------cCc-cccccCCcchhhhhhhhc
Confidence 022 566666666777777766
No 68
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=8.7e-14 Score=153.44 Aligned_cols=209 Identities=21% Similarity=0.145 Sum_probs=152.8
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCC---CCEEeCCCCCCCCC---CccccccCC-CCccEEEccCCCCc----
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTR---LMRSDLSTSGPGNN---MGSGFCDHW-KTVTAVSLCGLGLS---- 187 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~~~~~---~~~~~~~~l-~~L~~L~L~~n~l~---- 187 (918)
..+..+++|+.|++++|.+....+..+..+.+ |+.|++++|++... .+...+..+ ++|+.|++++|.++
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 56777999999999999998666655655555 99999999983211 123345566 89999999999988
Q ss_pred -ccCcccCCCCCCcEEeccCCCCC-----CCcccccCCcCcceeeccccccc-----ccchhccCCCCCcEEEeecCCCC
Q 002472 188 -ALPVDLTRLPVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLV 256 (918)
Q Consensus 188 -~lp~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~L~~N~l~ 256 (918)
.++..+..+.+|++|++++|.++ .++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 44555677889999999999998 24445667789999999999987 34556778899999999999987
Q ss_pred CCc-ccc-----cCCCCCCEEEeeCCCCCC-----C-cCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcc-cCCccccc
Q 002472 257 RPL-LDF-----RAMAELKILRLFGNPLEF-----L-PEILPLLKLRHLSLANIRIVADENLRSVNVQIEM-ENNSYFGA 323 (918)
Q Consensus 257 ~~~-~~l-----~~l~~L~~L~L~~N~l~~-----l-~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l-~~l~~l~l 323 (918)
+.. ..+ ...+.|+.|++++|.++. + ..+..+++|+.|++++|.++..+....-...... +.++.+++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 632 121 135799999999999961 1 2345668999999999999864211111111122 45666666
Q ss_pred cccc
Q 002472 324 SRHK 327 (918)
Q Consensus 324 ~~n~ 327 (918)
..|.
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 6654
No 69
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.37 E-value=7.2e-13 Score=148.20 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=159.1
Q ss_pred CCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccC
Q 002472 534 QVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFA 613 (918)
Q Consensus 534 ~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~ 613 (918)
+.+.....++..+|||++ ...++-.++++.+...-.+||++.|||+|+++++.+... .+.+++..+|..+...+|.
T Consensus 288 ~~~~~~~~lv~~~G~G~~---~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~-~s~d~v~~~y~~~k~~~F~ 363 (503)
T KOG0513|consen 288 YRLRVDDNLVLSDGGGIP---IIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALD-GSSDEVDRMYLQMKDVVFD 363 (503)
T ss_pred ccccccceEEEecCCCCh---hHHHHHhHHHhcccccccccccccccCcCceeehhhhhc-ccHHHHHHHHHHHhHHhhh
Confidence 445556778999999999 778888999988888889999999999999999999766 6999999999999998886
Q ss_pred CCCCCCchhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCC
Q 002472 614 EPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA 693 (918)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~ 693 (918)
.- .+.|+...++.+++..+++ .. ....+.++..+.....+..+.
T Consensus 364 ~~------------------------------r~~~~~~~Ie~~~~~~~G~----~~--~~di~~~~~nl~~~~~~~~~~ 407 (503)
T KOG0513|consen 364 GL------------------------------RSEYNYVRIECAIDRLFGD----AP--SMDIDGIRLNLTGLLVDITGE 407 (503)
T ss_pred cc------------------------------cCCCCccchhhhhhcccCc----cc--cccCCcchhhhhhhhccccHH
Confidence 52 2456777888888888854 11 112234455566665667778
Q ss_pred cceEeccCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCCCccCCCceeee
Q 002472 694 QPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQD 773 (918)
Q Consensus 694 ~~~~f~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~p~~~~~~~~vD 773 (918)
+...+|+|..+...+. +..+ ...+.+ .........+|++.|.|+++|.+|++. +..|.|
T Consensus 408 ~l~~~rn~~~~i~~~~---~~~~--------~~snde-------~~~~~~~~l~we~~rrss~a~~~f~~~---~~~~~d 466 (503)
T KOG0513|consen 408 ELLMARNYRHNINGGK---PRSE--------EVSNDE-------ALEEPAMQLVWEAKRRSSRAPPTFPPS---EGKFID 466 (503)
T ss_pred HHHHhhcccccccccc---cccc--------ccccch-------hhhhHHHHHHHHHHHhccCCCCccccc---ccceee
Confidence 8899999998754322 0000 001111 122233678999999999999999886 677999
Q ss_pred cccccCCcHHHHHHHHHHhCC----CCCCCEEEEECC
Q 002472 774 GAIVANNPTIFAIREAQLLWP----DTRIDCLVSIGC 806 (918)
Q Consensus 774 GGl~~NnP~~~al~ea~~~~~----~~~~~~vvSlGT 806 (918)
||..+|||...++.|.+++.. .....|+||+||
T Consensus 467 ~~~~~~n~~ld~~t~~~~~~~~~~~~~~~~~~~s~gt 503 (503)
T KOG0513|consen 467 GGLIANNPALDLMTDIHTYNKDLNKRNTMTIVVSAGT 503 (503)
T ss_pred cCccCCCcchhhhHHHHHHHhhhhhhcccceEEeccC
Confidence 999999999999999987653 345668999998
No 70
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=1.5e-13 Score=137.74 Aligned_cols=207 Identities=19% Similarity=0.168 Sum_probs=138.8
Q ss_pred hcCCCCCccEEEeecCC--------CCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCccc--
Q 002472 120 VVKRREPLRAVVLTKGV--------GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSAL-- 189 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~--------l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-- 189 (918)
.+..+.+|..|.++... +...+|-.+.-+++|..+.++.+. ...+-.....-+.|+++...+..++..
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~ 254 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPS 254 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccc
Confidence 44556678888776531 222344455667888888888876 333333333446777777766544411
Q ss_pred --Cc--------------------ccCCCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcE
Q 002472 190 --PV--------------------DLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVE 247 (918)
Q Consensus 190 --p~--------------------~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 247 (918)
|. .+..+..|++|||++|.|+.+.++..-++.++.|++|+|.|..+.. +..+++|++
T Consensus 255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~ 333 (490)
T KOG1259|consen 255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQL 333 (490)
T ss_pred ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceE
Confidence 11 1123456788888888888777777777888888888888877643 777888888
Q ss_pred EEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCcCcCCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccc
Q 002472 248 LSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHK 327 (918)
Q Consensus 248 L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~ 327 (918)
||||+|.++.+..+-.++.+.+.|.|++|.|..+..+..+-+|..||+++|+|..+....... .|+.|+.+.+.+|.
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG---~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIG---NLPCLETLRLTGNP 410 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccc---cccHHHHHhhcCCC
Confidence 888888877665444566777888888888887777778888888888888887654443321 36666677777776
Q ss_pred cchhh
Q 002472 328 LSAFF 332 (918)
Q Consensus 328 l~~~~ 332 (918)
+.+.+
T Consensus 411 l~~~v 415 (490)
T KOG1259|consen 411 LAGSV 415 (490)
T ss_pred ccccc
Confidence 66654
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=1.1e-13 Score=150.37 Aligned_cols=175 Identities=26% Similarity=0.327 Sum_probs=150.2
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 198 (918)
..++.+..|+.+.|..|.+.. +|..+.++..|.+|||+.|+ ...+|..+..|+ |+.|-+++|+++.+|..++.+..
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~Nq--lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQ--LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred hHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccch--hhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 445566678889999998875 78899999999999999998 445566565665 99999999999999999999999
Q ss_pred CcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCC
Q 002472 199 LEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (918)
Q Consensus 199 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l 278 (918)
|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|..+.. -.|..||+++|+++.+|-.|.+|+.|++|-|.+|.+
T Consensus 168 l~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 168 LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 9999999999999999999999999999999999999999984 468999999999999998999999999999999999
Q ss_pred CCCcC-c---CCCCCCcEEEccCC
Q 002472 279 EFLPE-I---LPLLKLRHLSLANI 298 (918)
Q Consensus 279 ~~l~~-l---~~l~~L~~L~L~~N 298 (918)
.++|. + +...=-++|+..-+
T Consensus 247 qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 247 QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCChHHHHhccceeeeeeecchhc
Confidence 98883 2 22222355665555
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=3.2e-12 Score=145.24 Aligned_cols=176 Identities=31% Similarity=0.346 Sum_probs=83.4
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCC-CccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceee
Q 002472 148 LTRLMRSDLSTSGPGNNMGSGFCDHWK-TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLI 226 (918)
Q Consensus 148 l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 226 (918)
++.++.|++.+|. ...++.....+. +|+.|++++|++..+|..+..+++|+.|++++|+++.+|...+.+++|+.|+
T Consensus 115 ~~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 3445555555554 122222232332 5555555555555554445555555555555555555554444455555555
Q ss_pred cccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCc-CcCCCCCCcEEEccCCCCCCCcC
Q 002472 227 VDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVADEN 305 (918)
Q Consensus 227 Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~-~l~~l~~L~~L~L~~N~i~~~~~ 305 (918)
+++|+++.+|..+..+..|++|.+++|.+...+..+.++.++..|.+.+|++..++ .+..+++++.|++++|.++....
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 55555555554444444455555555543333334444455555555555544322 33444445555555555554333
Q ss_pred cchhhhhhcccCCccccccccccchh
Q 002472 306 LRSVNVQIEMENNSYFGASRHKLSAF 331 (918)
Q Consensus 306 l~~l~~~~~l~~l~~l~l~~n~l~~~ 331 (918)
+.. +.+++.++++.|.+...
T Consensus 273 ~~~------~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 273 LGS------LTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccc------cCccCEEeccCcccccc
Confidence 222 34444455554444443
No 73
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.2e-13 Score=140.09 Aligned_cols=185 Identities=20% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCCCccEEEeecCCCCCcCc-ccccCCCCCCEEeCCCCCCCCCC--ccccccCCCCccEEEccCCCCcccCcc--cCCCC
Q 002472 123 RREPLRAVVLTKGVGSGHLS-DGIGVLTRLMRSDLSTSGPGNNM--GSGFCDHWKTVTAVSLCGLGLSALPVD--LTRLP 197 (918)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~l~~lp~~--l~~l~ 197 (918)
++.+|+.+.|.+..+....- .....|++++.|||++|- +... +-.....|++|+.|+|+.|++.....+ -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34455555555554432110 233455566666666554 2222 222344555666666666655411111 12345
Q ss_pred CCcEEeccCCCCC--CCcccccCCcCcceeeccccc-ccccchhccCCCCCcEEEeecCCCCCCc--ccccCCCCCCEEE
Q 002472 198 VLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNRLVRPL--LDFRAMAELKILR 272 (918)
Q Consensus 198 ~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~--~~l~~l~~L~~L~ 272 (918)
+|+.|.|+.|.++ .+...+..+++|+.|+|..|. +..-......+..|+.|+|++|.+...+ ...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 5566666666555 333333445556666665553 2111112223445556666666554444 2355555666666
Q ss_pred eeCCCCCCC--cC------cCCCCCCcEEEccCCCCCCCcCcch
Q 002472 273 LFGNPLEFL--PE------ILPLLKLRHLSLANIRIVADENLRS 308 (918)
Q Consensus 273 L~~N~l~~l--~~------l~~l~~L~~L~L~~N~i~~~~~l~~ 308 (918)
++.|.+.++ |+ ...+++|+.|+++.|+|.....+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 666555522 21 1345556666666666655444444
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=137.61 Aligned_cols=187 Identities=20% Similarity=0.217 Sum_probs=117.2
Q ss_pred hhcCCCCCccEEEeecCCCCCc--CcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc--ccCcccC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS--ALPVDLT 194 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~ 194 (918)
+....+++++.|||+.|-+... +-.....+++|+.|+|+.|++....-...-..+++|+.|.|+.|.++ .+-..+.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 4556777777777777766643 22334567777777777777433322222335677777777777777 3333455
Q ss_pred CCCCCcEEeccCCC-CCCCcccccCCcCcceeecccccccccc--hhccCCCCCcEEEeecCCCCCCc-cc------ccC
Q 002472 195 RLPVLEKLYLDNNK-LSTLPPELGAMKNLKVLIVDNNMLVCVP--VELRECVGLVELSLEHNRLVRPL-LD------FRA 264 (918)
Q Consensus 195 ~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~~~~-~~------l~~ 264 (918)
.+++|+.|+|..|. +..-.....-++.|+.|||++|++..++ ...+.++.|+.|+++.+.+..+. ++ ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 67777777777774 2221123344567777777777777555 45567777777777777776543 22 245
Q ss_pred CCCCCEEEeeCCCCCCCc---CcCCCCCCcEEEccCCCCCCCcC
Q 002472 265 MAELKILRLFGNPLEFLP---EILPLLKLRHLSLANIRIVADEN 305 (918)
Q Consensus 265 l~~L~~L~L~~N~l~~l~---~l~~l~~L~~L~L~~N~i~~~~~ 305 (918)
.++|+.|++..|++...+ .+..+++|+.|.+..|.++....
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 567777777777776443 44556667777777777765444
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=7.9e-12 Score=142.08 Aligned_cols=182 Identities=25% Similarity=0.281 Sum_probs=159.5
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCC-CCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLP 197 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 197 (918)
..+..++.++.|++.+|.++. ++.....+. +|+.|++++|. ...++..+..+++|+.|++++|+++.+|...+.++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~--i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNK--IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccc--hhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence 445556789999999999887 555666664 99999999998 34455567799999999999999999998777899
Q ss_pred CCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCC
Q 002472 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNP 277 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~ 277 (918)
+|+.|++++|+++.+|..+..+..|++|.+++|.+..++..+.++.++..|.+.+|++...+..++.+++|+.|++++|.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 99999999999999998777778899999999987778888999999999999999988766678899999999999999
Q ss_pred CCCCcCcCCCCCCcEEEccCCCCCCC
Q 002472 278 LEFLPEILPLLKLRHLSLANIRIVAD 303 (918)
Q Consensus 278 l~~l~~l~~l~~L~~L~L~~N~i~~~ 303 (918)
++.++.+..+.+|+.|++++|.+...
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccccCccCEEeccCcccccc
Confidence 99888889999999999999998864
No 76
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=5.8e-12 Score=122.77 Aligned_cols=103 Identities=30% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCcEEeccCCCCCCCccccc-CCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccc-cCCCCCCEEEeeC
Q 002472 198 VLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDF-RAMAELKILRLFG 275 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l-~~l~~L~~L~L~~ 275 (918)
.+++|+|.+|.|+.+. .++ .+.+|+.|+|++|.|+.+. .+..+++|+.|++++|+|+.+.+.+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3344444444444332 222 2334444444444444332 3333444444444444444332222 2344444444444
Q ss_pred CCCCCC---cCcCCCCCCcEEEccCCCCCC
Q 002472 276 NPLEFL---PEILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 276 N~l~~l---~~l~~l~~L~~L~L~~N~i~~ 302 (918)
|+|..+ ..+..+++|+.|+|.+|+++.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 444322 223344555555555555543
No 77
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=2.3e-12 Score=129.37 Aligned_cols=137 Identities=23% Similarity=0.303 Sum_probs=119.6
Q ss_pred cccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEE
Q 002472 169 FCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (918)
Q Consensus 169 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (918)
.+..++.|+.||||+|.|+.+..++.-++.++.|++++|.|..+.. +..+++|+.||||+|.++++...-.++-+.+.|
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3445678999999999999999888889999999999999997764 889999999999999999887666788899999
Q ss_pred EeecCCCCCCcccccCCCCCCEEEeeCCCCCCCc---CcCCCCCCcEEEccCCCCCCCcCcc
Q 002472 249 SLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP---EILPLLKLRHLSLANIRIVADENLR 307 (918)
Q Consensus 249 ~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~ 307 (918)
.|+.|.|..+ .+++++-+|..||+++|+|..+. .+++++.|+.|.|.+|++....+..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 9999998654 46888899999999999998554 6889999999999999998754443
No 78
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=9.5e-12 Score=121.28 Aligned_cols=123 Identities=28% Similarity=0.350 Sum_probs=53.7
Q ss_pred CCCCccEEEccCCCCcccCcccC-CCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhc-cCCCCCcEEE
Q 002472 172 HWKTVTAVSLCGLGLSALPVDLT-RLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVEL-RECVGLVELS 249 (918)
Q Consensus 172 ~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~ 249 (918)
+..++++|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|+|+.+...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 5567899999999999775 465 5889999999999999886 6888999999999999999887655 4689999999
Q ss_pred eecCCCCCCc--ccccCCCCCCEEEeeCCCCCCCcC-----cCCCCCCcEEEcc
Q 002472 250 LEHNRLVRPL--LDFRAMAELKILRLFGNPLEFLPE-----ILPLLKLRHLSLA 296 (918)
Q Consensus 250 L~~N~l~~~~--~~l~~l~~L~~L~L~~N~l~~l~~-----l~~l~~L~~L~L~ 296 (918)
|++|+|..+. ..+..+++|+.|+|.+|.++.-+. +..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999997765 347889999999999999884442 4578888888753
No 79
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.02 E-value=6.8e-10 Score=140.79 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=141.5
Q ss_pred cccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHH
Q 002472 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (918)
Q Consensus 368 ~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 446 (918)
+..+.|..|.-+.+.+++++++|+|.+++.+.... +.+.+.+.++.++.+|.+++...+..++.++.+++.+++...+.
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45667788877888999999999999999776666 99999999999999999988888999999999999889888999
Q ss_pred HhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhcc
Q 002472 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 447 v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~ 522 (918)
++++|++|.|++|+.+.+..++++|+|+++|++.+.++.+.++.++|+++.|++++.+.+++.+++++|+|.++..
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876766677688999999999999999999999999999943
No 80
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-10 Score=120.41 Aligned_cols=231 Identities=18% Similarity=0.166 Sum_probs=130.0
Q ss_pred CCceeeecCCCccCCcccCCcceeeehhhcCCCCCccEEEeecCCCCC----cCc-------ccccCCCCCCEEeCCCCC
Q 002472 92 EDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSG----HLS-------DGIGVLTRLMRSDLSTSG 160 (918)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p-------~~~~~l~~L~~L~L~~n~ 160 (918)
.....++++.... |....+.-.+.+.+.++|+..++++- ++| .+| ..+..+++|++||||.|-
T Consensus 30 ~s~~~l~lsgnt~-----G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 30 DSLTKLDLSGNTF-----GTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred CceEEEeccCCch-----hHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3344566655432 34444555566777777777777753 222 233 233455677777777776
Q ss_pred CCCCCcc---ccccCCCCccEEEccCCCCccc--------------CcccCCCCCCcEEeccCCCCCCCc-----ccccC
Q 002472 161 PGNNMGS---GFCDHWKTVTAVSLCGLGLSAL--------------PVDLTRLPVLEKLYLDNNKLSTLP-----PELGA 218 (918)
Q Consensus 161 ~~~~~~~---~~~~~l~~L~~L~L~~n~l~~l--------------p~~l~~l~~L~~L~L~~n~l~~lp-----~~l~~ 218 (918)
+-...++ ..+..+..|++|.|.+|.+... ...+..-+.|+++...+|++..-+ ..+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 3222222 2345567777777777776611 111334456777777777776322 34556
Q ss_pred CcCcceeeccccccc-----ccchhccCCCCCcEEEeecCCCCCCc-----ccccCCCCCCEEEeeCCCCCCC------c
Q 002472 219 MKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEFL------P 282 (918)
Q Consensus 219 l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~L~~N~l~~~~-----~~l~~l~~L~~L~L~~N~l~~l------~ 282 (918)
.+.|+.+.++.|.|. -+-..+..+++|+.|||.+|-++... ..+..+++|++|++++|.++.= .
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 667777777777665 22345666777777777777765332 2356666777777777776611 1
Q ss_pred Cc-CCCCCCcEEEccCCCCCCCcCcchhhhhhcccCCcccccccccc
Q 002472 283 EI-LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKL 328 (918)
Q Consensus 283 ~l-~~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l 328 (918)
.+ ...++|++|.|.+|.|+....+.-....-..+.+..|+++.|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 23567777777777776432211111111245556666666665
No 81
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.85 E-value=6.8e-09 Score=131.97 Aligned_cols=160 Identities=13% Similarity=0.196 Sum_probs=138.5
Q ss_pred CcccEEECcCCcch-hHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhh
Q 002472 371 RQLISMISSDNRHV-VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (918)
Q Consensus 371 ~~L~~L~ls~N~~v-~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~ 449 (918)
+.|..|.-+.++.. ++....+|..+.+.......+.+.++...++.++...+.+.+.++..+|..++-+++..++.+++
T Consensus 365 ~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~ 444 (2102)
T PLN03200 365 QILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGG 444 (2102)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55666666666553 56667777777766555577788899999999999999999999999999999888888999999
Q ss_pred hchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccch-HHHH
Q 002472 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE-SLRR 528 (918)
Q Consensus 450 ~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~-~~~~ 528 (918)
.|++|.|+++|.+.+..+++.|+++++|++.+++.++++++++|+++.|++++.+.+.+++++|+|++.++..++ .+++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 999999999999999999999999999999999998999999999999999999999999999999999998654 4444
Q ss_pred Hh
Q 002472 529 AI 530 (918)
Q Consensus 529 ~~ 530 (918)
.+
T Consensus 525 iV 526 (2102)
T PLN03200 525 CV 526 (2102)
T ss_pred HH
Confidence 33
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3e-10 Score=129.36 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=130.1
Q ss_pred CCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcE
Q 002472 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEK 201 (918)
Q Consensus 122 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 201 (918)
..+..++.+++..|.+.. +-..+..+++|..|++.+|. +.. +...+..+++|++|+|++|.|+.+. .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~-i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK-IEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccc-hhh-cccchhhhhcchheecccccccccc-chhhccchhh
Confidence 345556666677777665 22346667788888888887 232 2332556788888888888888665 4666777888
Q ss_pred EeccCCCCCCCcccccCCcCcceeecccccccccchh-ccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCC
Q 002472 202 LYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (918)
Q Consensus 202 L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~ 280 (918)
|++++|.|+.+. .+..+++|+.+++++|.+..+... ...+.+|+.+++.+|.+... ..+..+..+..+++..|.++.
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhccccccee
Confidence 888888887665 455577888888888888766543 46777888888888877533 334445555555777777776
Q ss_pred CcCcCCCCC--CcEEEccCCCCCCC-cCcchhhhhhcccCCccccccccccch
Q 002472 281 LPEILPLLK--LRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSA 330 (918)
Q Consensus 281 l~~l~~l~~--L~~L~L~~N~i~~~-~~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (918)
+..+..+.. |+.+++++|.+... ..+.. +.++..+++..|.+..
T Consensus 223 ~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~------~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 223 LEGLNELVMLHLRELYLSGNRISRSPEGLEN------LKNLPVLDLSSNRISN 269 (414)
T ss_pred ccCcccchhHHHHHHhcccCccccccccccc------cccccccchhhccccc
Confidence 655554444 77788888877654 33333 4455666666665554
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=2.2e-10 Score=130.40 Aligned_cols=177 Identities=25% Similarity=0.219 Sum_probs=113.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCccee
Q 002472 146 GVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVL 225 (918)
Q Consensus 146 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 225 (918)
..+..++.+++..|. +.. .-..+..+.+|+.|++.+|+|..+...+..+++|++|+|++|.|+.+. .+..+..|+.|
T Consensus 69 ~~l~~l~~l~l~~n~-i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNL-IAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhh-hhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhh
Confidence 345566666677776 222 233355677777778888877766644667777777777777777664 46666667777
Q ss_pred ecccccccccchhccCCCCCcEEEeecCCCCCCccc-ccCCCCCCEEEeeCCCCCCCcCcCCCCCCcEEEccCCCCCCCc
Q 002472 226 IVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADE 304 (918)
Q Consensus 226 ~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~-l~~l~~L~~L~L~~N~l~~l~~l~~l~~L~~L~L~~N~i~~~~ 304 (918)
++++|.|+.+. .+..+++|+.+++++|+++..... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++...
T Consensus 146 ~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 146 NLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 77777777663 445577777777777777655432 4667777777777777776666555666666677777776654
Q ss_pred CcchhhhhhcccCCccccccccccch
Q 002472 305 NLRSVNVQIEMENNSYFGASRHKLSA 330 (918)
Q Consensus 305 ~l~~l~~~~~l~~l~~l~l~~n~l~~ 330 (918)
.+..+. ...++.+++..|.+..
T Consensus 225 ~l~~~~----~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 225 GLNELV----MLHLRELYLSGNRISR 246 (414)
T ss_pred Ccccch----hHHHHHHhcccCcccc
Confidence 444311 0024555555555554
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.80 E-value=6.1e-10 Score=115.31 Aligned_cols=184 Identities=18% Similarity=0.133 Sum_probs=142.6
Q ss_pred hhhcCCCCCccEEEeecCCCCCcCcc----cccCCCCCCEEeCCCCCCCCCCc-------------cccccCCCCccEEE
Q 002472 118 MRVVKRREPLRAVVLTKGVGSGHLSD----GIGVLTRLMRSDLSTSGPGNNMG-------------SGFCDHWKTVTAVS 180 (918)
Q Consensus 118 ~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~~~~~~~-------------~~~~~~l~~L~~L~ 180 (918)
..++..+++|+.|+||+|-+....+. -+.++..|+.|.|.+|. +...- ......-++|+++.
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 36777889999999999998755443 34678999999999997 32211 11234457899999
Q ss_pred ccCCCCcccC-----cccCCCCCCcEEeccCCCCC-----CCcccccCCcCcceeeccccccc-----ccchhccCCCCC
Q 002472 181 LCGLGLSALP-----VDLTRLPVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGL 245 (918)
Q Consensus 181 L~~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L 245 (918)
..+|++..-+ ..+...+.|+.+.+..|.|. .+...+..+++|+.|||..|.++ .+...++.+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 9999988433 34667789999999999997 23356788999999999999998 456678889999
Q ss_pred cEEEeecCCCCCCc-----ccc-cCCCCCCEEEeeCCCCCC-----Cc-CcCCCCCCcEEEccCCCCCC
Q 002472 246 VELSLEHNRLVRPL-----LDF-RAMAELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 246 ~~L~L~~N~l~~~~-----~~l-~~l~~L~~L~L~~N~l~~-----l~-~l~~l~~L~~L~L~~N~i~~ 302 (918)
+.|++++|.+..-- ..+ ...++|++|.+.+|.|+. +. .....+.|..|+|++|.+..
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e 312 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGE 312 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccc
Confidence 99999999986533 112 457899999999999981 11 34458899999999999953
No 85
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.77 E-value=2e-10 Score=128.27 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcc-cccCCCCCCEEEeeCC
Q 002472 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGN 276 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~-~l~~l~~L~~L~L~~N 276 (918)
.|.+.+.++|.+..+..++.-++.|+.|+|++|++++.. .+..|+.|++|||++|.+..++. ....+. |+.|++++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 344445555555544444555555555555555555442 44455555555555555544331 112222 555555555
Q ss_pred CCCCCcCcCCCCCCcEEEccCCCCCCCcC
Q 002472 277 PLEFLPEILPLLKLRHLSLANIRIVADEN 305 (918)
Q Consensus 277 ~l~~l~~l~~l~~L~~L~L~~N~i~~~~~ 305 (918)
.++.+-.+.++.+|+.||+++|-|.+...
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNll~~hse 271 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNLLSEHSE 271 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhhhhcchh
Confidence 55555455555555555555555554333
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=2.2e-08 Score=119.36 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=94.4
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc-ccCcccCCCCCCcEEeccCCCCC-CCcccccCCcCcceeec
Q 002472 150 RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIV 227 (918)
Q Consensus 150 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 227 (918)
.++.|+|++|. +.+.+|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47889999998 67788888999999999999999998 89988999999999999999999 89999999999999999
Q ss_pred cccccc-ccchhccCC-CCCcEEEeecCCC
Q 002472 228 DNNMLV-CVPVELREC-VGLVELSLEHNRL 255 (918)
Q Consensus 228 s~N~l~-~lp~~l~~l-~~L~~L~L~~N~l 255 (918)
++|+++ .+|..+..+ .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999 889888653 4678889988864
No 87
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=5.3e-08 Score=116.10 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=93.9
Q ss_pred CccEEEccCCCCc-ccCcccCCCCCCcEEeccCCCCC-CCcccccCCcCcceeeccccccc-ccchhccCCCCCcEEEee
Q 002472 175 TVTAVSLCGLGLS-ALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLE 251 (918)
Q Consensus 175 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 251 (918)
.++.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999998 88989999999999999999998 89999999999999999999999 889999999999999999
Q ss_pred cCCCCCCcc-cccCC-CCCCEEEeeCCCCC
Q 002472 252 HNRLVRPLL-DFRAM-AELKILRLFGNPLE 279 (918)
Q Consensus 252 ~N~l~~~~~-~l~~l-~~L~~L~L~~N~l~ 279 (918)
+|++++..| .+..+ .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999997665 35543 56788999988643
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.65 E-value=1.3e-07 Score=87.42 Aligned_cols=118 Identities=20% Similarity=0.230 Sum_probs=107.4
Q ss_pred HHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcc
Q 002472 404 LLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE 483 (918)
Q Consensus 404 ~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~ 483 (918)
.+++.|+++.++.++...+...+..++.+|.+++..++.....+++.|++|.|.+++.+.++.++..|+++++|++.+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678899999999998888888999999999998878888888999999999999999999999999999999999887
Q ss_pred cccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 484 ~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.....+.+.++++.|.+++...+.++++.++|++.++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77777778899999999999999999999999998875
No 89
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.3e-08 Score=102.97 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=111.8
Q ss_pred hhcCCCCCccEEEeecCCCCCc--CcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc--ccCcccC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS--ALPVDLT 194 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~ 194 (918)
..-...+.++.|||.+|.|+.- +...+.++|.|+.|+|+.|.+ ...+...-..+.+|++|.|.+..+. .....+.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L-~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL-SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC-CCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 3344567788888888888752 334556888888888888873 3322222136678888888888776 4445567
Q ss_pred CCCCCcEEeccCCCCCCC--c-ccc----------cCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCc--
Q 002472 195 RLPVLEKLYLDNNKLSTL--P-PEL----------GAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL-- 259 (918)
Q Consensus 195 ~l~~L~~L~L~~n~l~~l--p-~~l----------~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~-- 259 (918)
.++.+++|+++.|.+..+ . ..+ ..++++..+.++-|++.. -++++..+.+..|.+....
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh------hcccchheeeecCcccchhhc
Confidence 778888888888755411 1 111 122233333333333332 2467777777777775544
Q ss_pred ccccCCCCCCEEEeeCCCCC---CCcCcCCCCCCcEEEccCCCCCC
Q 002472 260 LDFRAMAELKILRLFGNPLE---FLPEILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 260 ~~l~~l~~L~~L~L~~N~l~---~l~~l~~l~~L~~L~L~~N~i~~ 302 (918)
..+..++.+..|+|+.|+|. .+.++..++.|..|.+++|++..
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 23666677777888888877 44467777788888888887765
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5.5e-08 Score=100.47 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=134.4
Q ss_pred CcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHH
Q 002472 378 SSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLK 457 (918)
Q Consensus 378 ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~ 457 (918)
-+-.+.++..++.++||++-..+.+..+++.+.+.+++..+..+..+.+..+..|+.+++.. |...-.+...|++-.|.
T Consensus 95 qs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~plt 173 (550)
T KOG4224|consen 95 QSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLT 173 (550)
T ss_pred hCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhH
Confidence 35567888899999999998888888888999999988888887788888899999999866 44455678889999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHhh
Q 002472 458 LLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIR 531 (918)
Q Consensus 458 ~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~~ 531 (918)
+|-++++..+|..|+.++.|+++..+++++.| .+|.+|.|+.++.+.+.+++++++.++++|+-....||..-
T Consensus 174 rLakskdirvqrnatgaLlnmThs~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 174 RLAKSKDIRVQRNATGALLNMTHSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhcccchhhHHHHHHHHHHHhhhhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999988887 89999999999999999999999999999998887776543
No 91
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=8.6e-08 Score=98.67 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=114.2
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhcCCCCccccce-eeecChHHHHHHHHHcCCCCHHHHHHHHHHhhccccCCCCCCC
Q 002472 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDL-VCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (918)
Q Consensus 541 riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~-i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~~~ 619 (918)
..||+.|-|.-|+||.|+-+.+-+....... |. |+|.|+|+++|..+..+ .+++++.+.+.++..++-.+....
T Consensus 7 ~~lSfsg~gFlg~yh~gaa~~l~~~ap~ll~---~~~~~GaSagsl~a~~ll~~-~~l~~a~~~l~~~v~e~~~~s~g~- 81 (354)
T KOG3773|consen 7 MNLSFSGCGFLGIYHVGAANCLPRHAPRLLK---DRSIAGASAGSLVACDLLCG-LSLEEATGELYKMVDEARRKSLGA- 81 (354)
T ss_pred hheeecCCceeEEEecchHHHHHHHHHHHhc---cccccCcccchHHHhhhhcc-ccHHHHHHHHHHHHHHHHHhhcCC-
Confidence 4699999999999999999888775443332 33 89999999999999765 689999988887776554322110
Q ss_pred chhhhHHHHHHHHhhhcccceeEEeecCCCCHHHHHHHHHHHhcCCCCCchhccccCCCCEEEEEEeeeccCCCcceEec
Q 002472 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (918)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~~~~f~ 699 (918)
++-+....+.+.+.+++.+.+. . ......|..+-.| ....++-++..
T Consensus 82 ------------------------~tP~f~~~~~l~~~le~~LPpd----a---~~la~~rl~iSlT--r~~~~~N~lis 128 (354)
T KOG3773|consen 82 ------------------------FTPGFNLSDRLRSGLEDFLPPD----A---HWLASGRLHISLT--RVKDRENVLIS 128 (354)
T ss_pred ------------------------CCCCcCHHHHHHHHHHHhCChH----H---HHHhhcceeEEEE--eeeehhhhhhh
Confidence 1122334566777777776321 1 1111223333333 44555555555
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCCccccccccccCCCchhHHHHHHhhccCCCCCC--CccCCCceeeecccc
Q 002472 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD--DFSDDVFRWQDGAIV 777 (918)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rASsAaP~~F~--p~~~~~~~~vDGGl~ 777 (918)
.|.. +..+.||+.|||=+|.|-. |..+.|..|+|||+.
T Consensus 129 ~F~s----------------------------------------~~~liq~L~~scyiP~ysg~~pp~~rg~~yiDGg~s 168 (354)
T KOG3773|consen 129 EFPS----------------------------------------RDELIQALMCSCYIPMYSGLKPPIFRGVRYIDGGTS 168 (354)
T ss_pred cccc----------------------------------------HHHHHHHHHHhccCccccCCCCcceeeEEEeccccc
Confidence 5442 3459999999999999964 456789999999999
Q ss_pred cCCcHHHH
Q 002472 778 ANNPTIFA 785 (918)
Q Consensus 778 ~NnP~~~a 785 (918)
+|.|....
T Consensus 169 nnlP~~~~ 176 (354)
T KOG3773|consen 169 NNLPEADE 176 (354)
T ss_pred ccccccCc
Confidence 99998653
No 92
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=9.5e-10 Score=123.00 Aligned_cols=127 Identities=28% Similarity=0.299 Sum_probs=97.6
Q ss_pred CCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchh-ccCCCCCcEEEee
Q 002472 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLE 251 (918)
Q Consensus 173 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~ 251 (918)
+..|...+.++|.+..+..++.-++.|+.|+|++|+++... .+..++.|++|||+.|.++.+|.- ...+. |+.|+|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 34677778888888877777777888888888888888765 678888888888888888877652 23333 8888888
Q ss_pred cCCCCCCcccccCCCCCCEEEeeCCCCCCC---cCcCCCCCCcEEEccCCCCCC
Q 002472 252 HNRLVRPLLDFRAMAELKILRLFGNPLEFL---PEILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 252 ~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l---~~l~~l~~L~~L~L~~N~i~~ 302 (918)
+|.++.+ .++.+|++|+.||+++|-|... ..+..+..|+.|.|.+|++.+
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8887654 3677888888888888887733 335567778888888888876
No 93
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.1e-07 Score=92.94 Aligned_cols=174 Identities=18% Similarity=0.183 Sum_probs=147.7
Q ss_pred HHHHhhhccCCCceeecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHH
Q 002472 348 SALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVK 427 (918)
Q Consensus 348 ~~L~~ll~l~~N~l~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~ 427 (918)
..++++.-.++|+..+. ..|++..|..|.-+....++..+..+|-++...-++++.++..|.++-++.+++..+..++.
T Consensus 148 gCitnLaT~d~nk~kiA-~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqy 226 (550)
T KOG4224|consen 148 GCITNLATFDSNKVKIA-RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQY 226 (550)
T ss_pred hhhhhhhccccchhhhh-hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHH
Confidence 34556655666655442 35678888888888888999999999999987777779999999999999999999999998
Q ss_pred HHHHHHHHHhhCChHHHHHHhhhc--hHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCC
Q 002472 428 SVLQVVGQLAFASDTVAQKMLTKD--VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP 505 (918)
Q Consensus 428 ~~l~~L~~l~~~~~~~~~~v~~~g--~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~ 505 (918)
-+.-++.+++ .+......+.++| ++|.|+.|....+..++-.|-.|++|++...+.|++++ ++|.+|.+++|++++
T Consensus 227 ycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv-~ag~lP~lv~Llqs~ 304 (550)
T KOG4224|consen 227 YCTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV-EAGSLPLLVELLQSP 304 (550)
T ss_pred HHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH-hcCCchHHHHHHhCc
Confidence 8888898887 4555666788888 99999999999999999999999999999999999988 899999999999998
Q ss_pred ChhhHHHHHHHHHHhccch
Q 002472 506 EPRVNKAAARALAILGENE 524 (918)
Q Consensus 506 ~~~i~~~a~~al~~l~~~~ 524 (918)
.-....+...|+.++.-++
T Consensus 305 ~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 305 MGPLILASVACIRNISIHP 323 (550)
T ss_pred chhHHHHHHHHHhhccccc
Confidence 8777778888888776554
No 94
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=7.6e-08 Score=117.08 Aligned_cols=155 Identities=22% Similarity=0.236 Sum_probs=113.6
Q ss_pred hcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCC-CCCCccccccCCCCccEEEccCCC-CcccCcccCCCC
Q 002472 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGP-GNNMGSGFCDHWKTVTAVSLCGLG-LSALPVDLTRLP 197 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~ 197 (918)
........+.+.+-+|.+.. ++... .+++|++|-+..|.. +.......|..++.|++|||++|. +..+|..+++|-
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccchhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 34455677888888887654 33332 345799998888852 344555668889999999999875 679999999999
Q ss_pred CCcEEeccCCCCCCCcccccCCcCcceeeccccccc-ccchhccCCCCCcEEEeecCCCCCCc---ccccCCCCCCEEEe
Q 002472 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL---LDFRAMAELKILRL 273 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~---~~l~~l~~L~~L~L 273 (918)
+|++|+|+++.++.+|..+++|+.|.+|++..+.-. .+|.....+++|++|.+......... .++.++.+|+.|..
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999999999999999999999877644 55666666999999998765422211 23555666666655
Q ss_pred eCC
Q 002472 274 FGN 276 (918)
Q Consensus 274 ~~N 276 (918)
...
T Consensus 676 ~~~ 678 (889)
T KOG4658|consen 676 TIS 678 (889)
T ss_pred ecc
Confidence 433
No 95
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=6.3e-08 Score=117.82 Aligned_cols=178 Identities=22% Similarity=0.216 Sum_probs=129.5
Q ss_pred CCCCccEEEeecCC--CCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCc
Q 002472 123 RREPLRAVVLTKGV--GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLE 200 (918)
Q Consensus 123 ~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 200 (918)
..++|++|-+..|. +.......|..++.|+.|||++|. ....+|..++.|-+||+|+|+++.++.+|..+.+|..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 45579999999996 444444557889999999999998 678899999999999999999999999999999999999
Q ss_pred EEeccCCCCC-CCcccccCCcCcceeeccccccc---ccchhccCCCCCcEEEeecCCCCCCcccccCCCCCC----EEE
Q 002472 201 KLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELK----ILR 272 (918)
Q Consensus 201 ~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~----~L~ 272 (918)
+|++..+.-. .+|..+..|++|++|.+...... ..-..+.++.+|+.|....... .....+..+..|. .+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhh
Confidence 9999988755 55555566999999999765433 2233456666666666644332 1122333333333 333
Q ss_pred eeCCCCC-CCcCcCCCCCCcEEEccCCCCCC
Q 002472 273 LFGNPLE-FLPEILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 273 L~~N~l~-~l~~l~~l~~L~~L~L~~N~i~~ 302 (918)
+.++... .+..+..+.+|+.|.+.++.+.+
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCch
Confidence 3333333 44467778888888888888764
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=1.6e-07 Score=75.29 Aligned_cols=55 Identities=36% Similarity=0.518 Sum_probs=21.9
Q ss_pred CcEEeccCCCCCCCc-ccccCCcCcceeecccccccccc-hhccCCCCCcEEEeecC
Q 002472 199 LEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVP-VELRECVGLVELSLEHN 253 (918)
Q Consensus 199 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N 253 (918)
|++|++++|+++.+| ..|.++++|++|++++|+++.++ ..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 334444444444333 23334444444444444444332 23344444444444444
No 97
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.3e-07 Score=75.72 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=32.9
Q ss_pred CccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCC
Q 002472 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG 185 (918)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 185 (918)
+|++|++++|+++...+..|..+++|++|++++|. +....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666665555444555555555555555555 344444555555555555555554
No 98
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=1.3e-08 Score=91.50 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=54.8
Q ss_pred ccEEEccCCCCcccCcc---cCCCCCCcEEeccCCCCCCCccccc-CCcCcceeecccccccccchhccCCCCCcEEEee
Q 002472 176 VTAVSLCGLGLSALPVD---LTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELSLE 251 (918)
Q Consensus 176 L~~L~L~~n~l~~lp~~---l~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 251 (918)
+..|+|+.|.+-.+++. +.....|+..+|++|.+..+|+.|. ..+.+++|+|++|.|+.+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 33445555544433322 3333445555555555555555442 3345555555555555555555555555555555
Q ss_pred cCCCCCCcccccCCCCCCEEEeeCCCCCCCc
Q 002472 252 HNRLVRPLLDFRAMAELKILRLFGNPLEFLP 282 (918)
Q Consensus 252 ~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~ 282 (918)
.|.+...+.-+..|.+|..|+..+|.+..++
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 5555544443444555555555555554433
No 99
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.20 E-value=2.3e-06 Score=82.59 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=38.0
Q ss_pred CCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhcc-CCCCCcEEEeecCCCCCCc--ccccCCCCCCEEEee
Q 002472 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-ECVGLVELSLEHNRLVRPL--LDFRAMAELKILRLF 274 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~--~~l~~l~~L~~L~L~ 274 (918)
+...+||++|.+..++ .|..+++|.+|.|++|+|+.+...+. -+++|..|.|.+|+|..+. ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445555555554443 34445555555555555554433332 2344555555555544332 124444455555554
Q ss_pred CCCCC
Q 002472 275 GNPLE 279 (918)
Q Consensus 275 ~N~l~ 279 (918)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 44444
No 100
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=6.5e-08 Score=87.06 Aligned_cols=110 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred ccEEEeecCCCCCcCcc---cccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcccCCCCCCcEEe
Q 002472 127 LRAVVLTKGVGSGHLSD---GIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (918)
Q Consensus 127 L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 203 (918)
+..++|+++++-. +++ .+....+|...+|++|. +....+....+++.++.|+|++|.|+.+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4556666665542 222 33444556666777776 344444444455566777777777777776666677777777
Q ss_pred ccCCCCCCCcccccCCcCcceeecccccccccchh
Q 002472 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE 238 (918)
Q Consensus 204 L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~ 238 (918)
++.|.+...|..+..|.+|-.|+..+|.+..+|-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77777766666666666666666666666665544
No 101
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.9e-08 Score=97.40 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=75.4
Q ss_pred ccEEEeecCCCCCc-CcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCC-Cccc--CcccCCCCCCcEE
Q 002472 127 LRAVVLTKGVGSGH-LSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG-LSAL--PVDLTRLPVLEKL 202 (918)
Q Consensus 127 L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--p~~l~~l~~L~~L 202 (918)
|+.|||++..|+.. +-..++.+.+|+.|.|.+++ +.+.+...+.+-.+|+.|+|+.+. +++. .--+.+++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 55555555554421 22234455555555555555 344444445555555555555543 3311 1123455555555
Q ss_pred eccCCCCC--CCcccccC-CcCcceeeccccccc----ccchhccCCCCCcEEEeecCCC-CC-CcccccCCCCCCEEEe
Q 002472 203 YLDNNKLS--TLPPELGA-MKNLKVLIVDNNMLV----CVPVELRECVGLVELSLEHNRL-VR-PLLDFRAMAELKILRL 273 (918)
Q Consensus 203 ~L~~n~l~--~lp~~l~~-l~~L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~L~~N~l-~~-~~~~l~~l~~L~~L~L 273 (918)
+|+.|.+. .+...+.. -++|+.|+|+++.-. ++..-...+++|.+|||++|.- +. ....|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 55555554 11111111 134555555544211 2222224455555555555432 11 0022445555555555
Q ss_pred eCCCCCC---CcCcCCCCCCcEEEccC
Q 002472 274 FGNPLEF---LPEILPLLKLRHLSLAN 297 (918)
Q Consensus 274 ~~N~l~~---l~~l~~l~~L~~L~L~~ 297 (918)
+.|..-. +-++...+.|.+|++.+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecc
Confidence 5554321 11344445555555544
No 102
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=6.6e-06 Score=79.51 Aligned_cols=102 Identities=28% Similarity=0.394 Sum_probs=75.8
Q ss_pred CCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCccccc-CCcCcceeecccccccccc--hhccCCCCCcEEE
Q 002472 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVP--VELRECVGLVELS 249 (918)
Q Consensus 173 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~ 249 (918)
+.+...+||++|.+..++ .+..++.|.+|.|++|+|+.+.+.+. .+++|..|.|.+|.|..+- ..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356677888888887665 56778889999999999997776664 4577999999999988553 3567789999999
Q ss_pred eecCCCCCCcc----cccCCCCCCEEEeeC
Q 002472 250 LEHNRLVRPLL----DFRAMAELKILRLFG 275 (918)
Q Consensus 250 L~~N~l~~~~~----~l~~l~~L~~L~L~~ 275 (918)
+-+|..+.... -+..+++|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99998765542 155666666666543
No 103
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=1.3e-06 Score=87.66 Aligned_cols=182 Identities=19% Similarity=0.141 Sum_probs=109.0
Q ss_pred hcCCCCCccEEEeecCCCCCc----CcccccCCCCCCEEeCCCCCCCCC---Cc-------cccccCCCCccEEEccCCC
Q 002472 120 VVKRREPLRAVVLTKGVGSGH----LSDGIGVLTRLMRSDLSTSGPGNN---MG-------SGFCDHWKTVTAVSLCGLG 185 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~~~~~---~~-------~~~~~~l~~L~~L~L~~n~ 185 (918)
.+..+..++.++||+|.|... +...+.+-.+|+..+++.-. +.. .+ ...+-+|++|+..+||+|-
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 344477788888888887754 23445556777877777542 111 11 2234467788888888887
Q ss_pred Cc-ccC----cccCCCCCCcEEeccCCCCCCCc-----cc---------ccCCcCcceeecccccccccch-----hccC
Q 002472 186 LS-ALP----VDLTRLPVLEKLYLDNNKLSTLP-----PE---------LGAMKNLKVLIVDNNMLVCVPV-----ELRE 241 (918)
Q Consensus 186 l~-~lp----~~l~~l~~L~~L~L~~n~l~~lp-----~~---------l~~l~~L~~L~Ls~N~l~~lp~-----~l~~ 241 (918)
+. ..| +.+..-+.|.+|.|++|.+..+. .. ..+-+.|++.....|++...|. .+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 66 333 23556677888888888776322 11 1234667777777777764433 2222
Q ss_pred CCCCcEEEeecCCCCCCc------ccccCCCCCCEEEeeCCCCCCCc------CcCCCCCCcEEEccCCCCCC
Q 002472 242 CVGLVELSLEHNRLVRPL------LDFRAMAELKILRLFGNPLEFLP------EILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 242 l~~L~~L~L~~N~l~~~~------~~l~~l~~L~~L~L~~N~l~~l~------~l~~l~~L~~L~L~~N~i~~ 302 (918)
-.+|+.+.+..|.|.-.. ..+..+.+|+.|||..|-++... .+..++.|+.|.+..|-++.
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 356777777777664221 12456677777777777776221 24455667777777776664
No 104
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.02 E-value=1.5e-05 Score=73.57 Aligned_cols=111 Identities=26% Similarity=0.284 Sum_probs=95.9
Q ss_pred ccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHH
Q 002472 369 AVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (918)
Q Consensus 369 ~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v 447 (918)
.++.|..+.-..+..+.+.++++|++++.+.+.. ...++.++++.++.++...++.++..++.+|.+++.........+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4455555545666889999999999999886666 778888999999999998888989999999999998776667778
Q ss_pred hhhchHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 002472 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (918)
Q Consensus 448 ~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~ 479 (918)
.+.|+++.|.+++...+..++..|+++++|++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999986
No 105
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=2.5e-06 Score=86.70 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=77.2
Q ss_pred CCCCCCEEeCCCCCCCCCC-ccccccCCCCccEEEccCCCCcccCccc-CCCCCCcEEeccCCCCC--CCcccccCCcCc
Q 002472 147 VLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLGLSALPVDL-TRLPVLEKLYLDNNKLS--TLPPELGAMKNL 222 (918)
Q Consensus 147 ~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L 222 (918)
.+++++.|||.+|.+.... +...+.+|+.|+.|+|+.|.+..--..+ ..+.+|++|-|.+..+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3566667777777622211 2334556677777777777665211111 24456666666666655 344445566666
Q ss_pred ceeeccccccccc--ch-hccCC-CCCcEEEeecCCCCCCcc--c-ccCCCCCCEEEeeCCCCCCCc---CcCCCCCCcE
Q 002472 223 KVLIVDNNMLVCV--PV-ELREC-VGLVELSLEHNRLVRPLL--D-FRAMAELKILRLFGNPLEFLP---EILPLLKLRH 292 (918)
Q Consensus 223 ~~L~Ls~N~l~~l--p~-~l~~l-~~L~~L~L~~N~l~~~~~--~-l~~l~~L~~L~L~~N~l~~l~---~l~~l~~L~~ 292 (918)
+.|.+|.|.+..+ .. ..... +.++.|++..|....-.. . -.-.+++..+.+..|.+.... ....++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666666644311 00 01110 122223222221100000 0 012345555666666655332 2334555556
Q ss_pred EEccCCCCCCCcCcch
Q 002472 293 LSLANIRIVADENLRS 308 (918)
Q Consensus 293 L~L~~N~i~~~~~l~~ 308 (918)
|+|+.|+|.....+..
T Consensus 229 LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDA 244 (418)
T ss_pred hhhcccccccHHHHHH
Confidence 6666666665544444
No 106
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.9e-06 Score=60.70 Aligned_cols=33 Identities=45% Similarity=0.742 Sum_probs=11.5
Q ss_pred cEEeccCCCCCCCcccccCCcCcceeecccccc
Q 002472 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNML 232 (918)
Q Consensus 200 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l 232 (918)
++|++++|+|+.+|..+.+|++|++|++++|+|
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 333333333333333333333333333333333
No 107
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=1.8e-05 Score=86.74 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=91.4
Q ss_pred cCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCC-CCcccCcccCCCCCC
Q 002472 121 VKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPVL 199 (918)
Q Consensus 121 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L 199 (918)
+..+.+++.|++++|.++. +|. + -.+|+.|.+++|. ....+|..+ ..+|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~-nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCN-NLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCC-CcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 4446889999999998776 452 1 2469999999876 335556544 368999999998 6777774 47
Q ss_pred cEEeccCCCCC---CCcccccCCcCcceeeccccc-cc--ccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEe
Q 002472 200 EKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRL 273 (918)
Q Consensus 200 ~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~N~-l~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L 273 (918)
+.|++..|... .+|. +|+.|.+.+++ .. .+|..+ -++|++|++++|....+++.+. .+|+.|.+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 77888777654 5554 46677775433 11 223211 1589999999988765554443 58999999
Q ss_pred eCCC
Q 002472 274 FGNP 277 (918)
Q Consensus 274 ~~N~ 277 (918)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8774
No 108
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.3e-06 Score=59.91 Aligned_cols=40 Identities=35% Similarity=0.583 Sum_probs=32.1
Q ss_pred CCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCc
Q 002472 174 KTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLP 213 (918)
Q Consensus 174 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 213 (918)
++|++|++++|+|+.+|..+.+|++|++|++++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888999988888877888999999999999888665
No 109
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=1.5e-05 Score=94.88 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhc
Q 002472 421 FAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMR 500 (918)
Q Consensus 421 ~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ 500 (918)
..+..+..++..+..+....+ ..+.-.-..++.-+.+-+.......+.....++.+++.+...+....-...++..|+.
T Consensus 318 ~r~~~v~~cl~~l~~~~~~~~-~~~~~~~~~~l~~i~~sm~~~~s~~~i~~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn 396 (699)
T KOG3665|consen 318 KRPSEVSRCLNELLDLLKSLD-STREYDISECLKLIINSMNTFSSSNQIQGSACLIHIVKHTKQRLSPLLVSLLLKVLLN 396 (699)
T ss_pred cChHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHhhhhccChHHHHHHHHHHHH
Confidence 334555556666665554321 1111111222333333333333355555677788888888754444433444444444
Q ss_pred cc
Q 002472 501 LT 502 (918)
Q Consensus 501 ll 502 (918)
..
T Consensus 397 ~v 398 (699)
T KOG3665|consen 397 LV 398 (699)
T ss_pred hh
Confidence 43
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=7.5e-07 Score=90.50 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=118.5
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCC-CccccccCCCCccEEEccCCCCc--ccCcccC-
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLGLS--ALPVDLT- 194 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~- 194 (918)
..++.+.+|+.|.|.++++.+.+...+.+-.+|+.|+|+.+.-++. ...-.+..++.|..|+|+.|.++ .+...+.
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 4566788999999999999998888899999999999999862222 23345778999999999999876 1111111
Q ss_pred CCCCCcEEeccCCCCC----CCcccccCCcCcceeeccccc-cc-ccchhccCCCCCcEEEeecCCCCCCcc----cccC
Q 002472 195 RLPVLEKLYLDNNKLS----TLPPELGAMKNLKVLIVDNNM-LV-CVPVELRECVGLVELSLEHNRLVRPLL----DFRA 264 (918)
Q Consensus 195 ~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~Ls~N~-l~-~lp~~l~~l~~L~~L~L~~N~l~~~~~----~l~~ 264 (918)
--++|+.|+|+++.=. .+.--...+++|..||||.|. ++ ..-..|.+++.|++|.++.|. +++| .+..
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s 361 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNS 361 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeecc
Confidence 1367899999987432 332223678999999999775 44 444577889999999999987 4554 3788
Q ss_pred CCCCCEEEeeCCC
Q 002472 265 MAELKILRLFGNP 277 (918)
Q Consensus 265 l~~L~~L~L~~N~ 277 (918)
.+.|.+|++.++-
T Consensus 362 ~psl~yLdv~g~v 374 (419)
T KOG2120|consen 362 KPSLVYLDVFGCV 374 (419)
T ss_pred CcceEEEEecccc
Confidence 9999999998763
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.84 E-value=9.5e-05 Score=77.08 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=123.9
Q ss_pred cCcccEE-ECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHh
Q 002472 370 VRQLISM-ISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (918)
Q Consensus 370 L~~L~~L-~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~ 448 (918)
+.+|..+ ..+.++.+++.+..++++.++.+...+.+.+.|++..+..++..+++.++..++.+|.++....+... .+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~--~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE--QI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH--HH
Confidence 3344333 55778999999999999999888777999999999999999999999999999999999985543332 33
Q ss_pred hhchHHHHHHHhcC--CChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHH
Q 002472 449 TKDVLKSLKLLCAH--KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESL 526 (918)
Q Consensus 449 ~~g~~p~L~~Ll~~--~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~ 526 (918)
+. .++.+.+...+ -+..+|..+++++.|++..++.+..+. +.++.+++++...+...+..+-+++.++.+++..
T Consensus 92 k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 33 45566554443 367899999999999988877765543 4678899999999999999999999999999977
Q ss_pred HHHhh
Q 002472 527 RRAIR 531 (918)
Q Consensus 527 ~~~~~ 531 (918)
.+.+-
T Consensus 168 ~~~Ll 172 (254)
T PF04826_consen 168 TRELL 172 (254)
T ss_pred HHHHH
Confidence 55543
No 112
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=4.8e-05 Score=83.51 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=84.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCC-CCcccCcccCCCCCCcEEeccCC-CCCCCcccccCCcCc
Q 002472 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPVLEKLYLDNN-KLSTLPPELGAMKNL 222 (918)
Q Consensus 145 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L 222 (918)
+..+.+++.|++++|. +. .+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-Cc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 4456888999999886 33 3342 2346889999874 566777654 358899999988 6667774 46
Q ss_pred ceeeccccccc---ccchhccCCCCCcEEEeecCCCCCCccccc-CC-CCCCEEEeeCCCCCCCcCcCCCCCCcEEEccC
Q 002472 223 KVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFR-AM-AELKILRLFGNPLEFLPEILPLLKLRHLSLAN 297 (918)
Q Consensus 223 ~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~-~l-~~L~~L~L~~N~l~~l~~l~~l~~L~~L~L~~ 297 (918)
+.|+++.|.+. .+|. +|+.|.+.+++.... ..+. .+ ++|++|++++|....+|.- -..+|+.|+++.
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i~LP~~-LP~SLk~L~ls~ 186 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNIILPEK-LPESLQSITLHI 186 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccc-cccccccCCcccEEEecCCCcccCccc-ccccCcEEEecc
Confidence 77777766644 4554 456666644321100 0111 12 5789999988886655531 125788888877
Q ss_pred CC
Q 002472 298 IR 299 (918)
Q Consensus 298 N~ 299 (918)
|.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 64
No 113
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=5e-06 Score=83.56 Aligned_cols=248 Identities=17% Similarity=0.117 Sum_probs=162.2
Q ss_pred cCCcchhHHHHHhhhhhhcCCCCCCceeeecCCCccCCcccCCcceeeehhhcCCCCCccEEEeecCCCC---CcCc---
Q 002472 69 SGEEEDQVALKLQSQLMVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGS---GHLS--- 142 (918)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~p--- 142 (918)
..++.+.+...+.. +..++.++++.... |......-...+.+-.+|+..++++--.. ..++
T Consensus 15 T~eDvk~v~eel~~--------~d~~~evdLSGNti-----gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L 81 (388)
T COG5238 15 TKEDVKGVVEELEM--------MDELVEVDLSGNTI-----GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNL 81 (388)
T ss_pred ccchhhHHHHHHHh--------hcceeEEeccCCcc-----cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHH
Confidence 44555555554422 34556778876654 22223333466777888999988864211 1122
Q ss_pred ----ccccCCCCCCEEeCCCCCCCCCCccc----cccCCCCccEEEccCCCCcccC-----cc---------cCCCCCCc
Q 002472 143 ----DGIGVLTRLMRSDLSTSGPGNNMGSG----FCDHWKTVTAVSLCGLGLSALP-----VD---------LTRLPVLE 200 (918)
Q Consensus 143 ----~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~lp-----~~---------l~~l~~L~ 200 (918)
..+..|++|+..+||.|.+ ....|. .+.+-..|.+|.|++|.+..+. .. ..+-+.|+
T Consensus 82 ~~Ll~aLlkcp~l~~v~LSDNAf-g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le 160 (388)
T COG5238 82 VMLLKALLKCPRLQKVDLSDNAF-GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLE 160 (388)
T ss_pred HHHHHHHhcCCcceeeecccccc-CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCce
Confidence 4567889999999999983 333333 4556788999999999887332 11 23457899
Q ss_pred EEeccCCCCCCCcc-----cccCCcCcceeeccccccc-c-----cchhccCCCCCcEEEeecCCCCCCc-----ccccC
Q 002472 201 KLYLDNNKLSTLPP-----ELGAMKNLKVLIVDNNMLV-C-----VPVELRECVGLVELSLEHNRLVRPL-----LDFRA 264 (918)
Q Consensus 201 ~L~L~~n~l~~lp~-----~l~~l~~L~~L~Ls~N~l~-~-----lp~~l~~l~~L~~L~L~~N~l~~~~-----~~l~~ 264 (918)
+.....|++...|. .+....+|+++.+..|.|. . +-..+..+.+|+.|+|.+|-++... ..+..
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 99999999986553 3344578999999999987 1 1224566889999999999987543 23677
Q ss_pred CCCCCEEEeeCCCCCC--Cc----Cc--CCCCCCcEEEccCCCCCCCc----CcchhhhhhcccCCccccccccccchh
Q 002472 265 MAELKILRLFGNPLEF--LP----EI--LPLLKLRHLSLANIRIVADE----NLRSVNVQIEMENNSYFGASRHKLSAF 331 (918)
Q Consensus 265 l~~L~~L~L~~N~l~~--l~----~l--~~l~~L~~L~L~~N~i~~~~----~l~~l~~~~~l~~l~~l~l~~n~l~~~ 331 (918)
++.|+.|.+..|-++. .. .+ ...++|..|.+.+|.+.... .+.... .-.++.|..+.+.+|.+...
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e-~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE-QDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh-hcccHHHHHHHHccCcchhH
Confidence 7889999999998872 11 12 24678899999999876521 111111 11255566666777777664
No 114
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=8.4e-06 Score=97.03 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCccEEEccCCCCc--ccCcccC-CCCCCcEEeccCCCCC--CCcccccCCcCcceeecccccccccchhccCCCCCcEE
Q 002472 174 KTVTAVSLCGLGLS--ALPVDLT-RLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVEL 248 (918)
Q Consensus 174 ~~L~~L~L~~n~l~--~lp~~l~-~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 248 (918)
.+|++|++++...- ..|..++ .||+|+.|.+++-.+. .+-....++++|..||+|+.+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666665422 2222233 4566777776665554 2223335666777777777777666 566667777777
Q ss_pred EeecCCCCCCc--ccccCCCCCCEEEeeCCCCCCCc--------CcCCCCCCcEEEccCCCCCC
Q 002472 249 SLEHNRLVRPL--LDFRAMAELKILRLFGNPLEFLP--------EILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 249 ~L~~N~l~~~~--~~l~~l~~L~~L~L~~N~l~~l~--------~l~~l~~L~~L~L~~N~i~~ 302 (918)
.+.+=.+.... .++.+|++|+.||+|......-+ .-..+++|+.||.|++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66654443322 24566777777777655433111 12246677777777666543
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.72 E-value=0.0001 Score=86.96 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=138.6
Q ss_pred cccCcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHH
Q 002472 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKM 447 (918)
Q Consensus 368 ~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v 447 (918)
+.++.|..+.-++|.++...++..|.+|+....+...+.+.|+++.+.+++.+.+...+..++..|.++.|.. .....+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~m 368 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQM 368 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHH
Confidence 4455566655578888888999999999998888888899999999999999988888888999999999655 457789
Q ss_pred hhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccc-cCCChhhHHHHHHHHHHhccchHH
Q 002472 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT-VGPEPRVNKAAARALAILGENESL 526 (918)
Q Consensus 448 ~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~i~~~a~~al~~l~~~~~~ 526 (918)
+..|++|+|+.|+...+ .+..|+..+-++....+.+..+. ..++++.+++++ ..+++++..+..+.+.+++.++..
T Consensus 369 V~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 369 VSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred HHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 99999999999998654 33457888999999877766655 557889988864 557788888888889999988877
Q ss_pred HHHhhcCCCCCCcceEEEecCCCchHHHHH
Q 002472 527 RRAIRGRQVPKQGLRILSMDGGGMKGLATV 556 (918)
Q Consensus 527 ~~~~~~~~~~~~~~riL~LdGGG~rG~~~~ 556 (918)
.+.|- .|||.+.++..
T Consensus 446 aqlm~--------------~g~gL~~L~~r 461 (708)
T PF05804_consen 446 AQLMC--------------EGNGLQSLMKR 461 (708)
T ss_pred HHHHH--------------hcCcHHHHHHH
Confidence 66543 58887777654
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.63 E-value=0.00024 Score=83.97 Aligned_cols=142 Identities=22% Similarity=0.248 Sum_probs=119.4
Q ss_pred chhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcC
Q 002472 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH 462 (918)
Q Consensus 383 ~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~ 462 (918)
.+..-++..|.|++.+......+.+.|++..|+.+|.+.+.+....+..+|+.+....+ ....+.+.|++++|.+++.+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcC
Confidence 34456677899999888777788899999999999999888888889999999986554 56788899999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHH
Q 002472 463 KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRR 528 (918)
Q Consensus 463 ~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~ 528 (918)
.+...+..|++.+.|+++..+.+.+++ ..|++|.|+.++...+ .+..+...+-++..++..+.
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV-~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMV-SLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS 405 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHH-HCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH
Confidence 999999999999999999999977766 9999999999998654 44556777777777765543
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.60 E-value=0.00015 Score=52.58 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=36.9
Q ss_pred ChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 002472 440 SDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (918)
Q Consensus 440 ~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~ 479 (918)
+++..+.++++|++|.|+.|+.+.+..+++.|+||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3466788999999999999999999999999999999997
No 118
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=4.4e-05 Score=77.25 Aligned_cols=87 Identities=29% Similarity=0.384 Sum_probs=39.6
Q ss_pred ccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCC--CCC-CCcccccCCcCcceeeccccccccc--chhccCCCC
Q 002472 170 CDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNN--KLS-TLPPELGAMKNLKVLIVDNNMLVCV--PVELRECVG 244 (918)
Q Consensus 170 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n--~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~ 244 (918)
...+..|+.|++.+..++.+. .+-.|++|++|.++.| .+. .++.....+++|++|++++|+|..+ -..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 334445555555555554332 2334555555555555 332 3332333345555555555555421 012233444
Q ss_pred CcEEEeecCCCCC
Q 002472 245 LVELSLEHNRLVR 257 (918)
Q Consensus 245 L~~L~L~~N~l~~ 257 (918)
|..|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 4455555544443
No 119
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.45 E-value=0.00053 Score=79.35 Aligned_cols=118 Identities=23% Similarity=0.272 Sum_probs=104.4
Q ss_pred hhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCccc--cccee
Q 002472 412 QPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN--RRILV 489 (918)
Q Consensus 412 ~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~--~~~~~ 489 (918)
+..+.+|.+..+.++.++.-.+..++|++......+-.-|.+|.|+.|+.+.+.+|++.|++|+.|++++..+ ..-.+
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 3445667788889999999999999999988888999999999999999999999999999999999999987 55577
Q ss_pred eccCcccchhccccC-CChhhHHHHHHHHHHhccchHHHHH
Q 002472 490 TSESLRDLLMRLTVG-PEPRVNKAAARALAILGENESLRRA 529 (918)
Q Consensus 490 ~~~~~~~~L~~ll~~-~~~~i~~~a~~al~~l~~~~~~~~~ 529 (918)
.+.+.++.+++++.. .|.++++.+...+-++..++.++..
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ 356 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKML 356 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHH
Confidence 789999999999986 8899999999999999888655543
No 120
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.43 E-value=0.001 Score=77.44 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=161.1
Q ss_pred CcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhh
Q 002472 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (918)
Q Consensus 371 ~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~ 449 (918)
+-|....-+.++.|++.+++.|+++..+.... +.+.+.++...++.++..++.++...+..+|..++. .....+.+|+
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~ 158 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFD 158 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhC
Confidence 34444455688999999999999998877776 888889999999999999999988999999999995 4456677999
Q ss_pred hchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHH
Q 002472 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRA 529 (918)
Q Consensus 450 ~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~ 529 (918)
.+.++.|..++...+..++..++..+.+++..++...+.+.+.|+++.++..+...|.-++..+...+.-+++.+
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~----- 233 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP----- 233 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-----
Confidence 999999999999977778888899999999999999999999999999999999988889999999998888754
Q ss_pred hhcCCCCCCcceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhc
Q 002472 530 IRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGK 609 (918)
Q Consensus 530 ~~~~~~~~~~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~ 609 (918)
-|..-+...|+++.|.+.+...-.+. + ..+.=.-|.+...=.+..++..++...|..+..
T Consensus 234 ------------------~g~~yL~~~gi~~~L~~~l~~~~~dp-~-~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 234 ------------------HGLQYLEQQGIFDKLSNLLQDSEEDP-R-LSSLLLPGRMKFFGNLARVSPQEVLELYPAFLE 293 (503)
T ss_pred ------------------hHHHHHHhCCHHHHHHHHHhccccCC-c-ccchhhhhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 23555666677777766443221111 0 111111111111000112366777788877776
Q ss_pred ccc
Q 002472 610 LVF 612 (918)
Q Consensus 610 ~iF 612 (918)
.+|
T Consensus 294 ~l~ 296 (503)
T PF10508_consen 294 RLF 296 (503)
T ss_pred HHH
Confidence 666
No 121
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00014 Score=73.76 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=19.7
Q ss_pred CCCCCCEEEeeCCCCCC---CcCcCCCCCCcEEEccCCCCCC
Q 002472 264 AMAELKILRLFGNPLEF---LPEILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 264 ~l~~L~~L~L~~N~l~~---l~~l~~l~~L~~L~L~~N~i~~ 302 (918)
.+++|++|++++|+|+. ++.+..+.+|..|++.+|..+.
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 33555555555555542 2233445555566666555544
No 122
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=2.1e-05 Score=79.53 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=48.7
Q ss_pred CCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccch--hccCCCCCcEEEe
Q 002472 173 WKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV--ELRECVGLVELSL 250 (918)
Q Consensus 173 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L 250 (918)
+.+.+.|++.+|.|+.|. ...+++.|+.|.|+-|.|+.+. .+..+++|++|+|..|.|..+.+ -+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666666443 2345666666666666666553 45666666666666666664432 3455666666666
Q ss_pred ecCCCC
Q 002472 251 EHNRLV 256 (918)
Q Consensus 251 ~~N~l~ 256 (918)
..|.-.
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 665543
No 123
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=97.19 E-value=0.0011 Score=74.22 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCcceEEEecCCCchH-HHHHHHHHHHHHhcCCCCccccceeeecChHHH-HHHHHHcCCCCHHHHH
Q 002472 537 KQGLRILSMDGGGMKG-LATVQILKEIEKGTGKRIHELFDLVCGTSTGGM-LAIALAVKLMTLDQCE 601 (918)
Q Consensus 537 ~~~~riL~LdGGG~rG-~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gai-ia~~l~~~~~s~~~~~ 601 (918)
..+...|+++|||.|+ ++++|+|++|.+ ..+.+.+++|+|+|.|+. ++.+++-...+++++.
T Consensus 40 ~~p~i~~~~sGGG~Ra~~~~~G~l~~l~~---~gll~~~~yisg~Sgg~w~~~~~~~~~~~~~~~l~ 103 (438)
T cd00147 40 EVPVIAILGSGGGYRAMTGGAGALKALDE---GGLLDCVTYLSGLSGSTWLMASLYSNPDWSQKDLD 103 (438)
T ss_pred cCceEEEEecCchHHHHHhhhHHHHHHHh---CCchhccceeeeccchHHHHHHHHHcCCCChhhhh
Confidence 3456789999999999 679999999999 347788999999999995 5555555656665654
No 124
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0024 Score=66.41 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=118.7
Q ss_pred CcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCCh----HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHH
Q 002472 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP----EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (918)
Q Consensus 381 N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~----~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L 456 (918)
.+.+..+.+.+|+.|+-..+-+..+.+.|.+..+++++...+. +..+.++..|..++ ++|.....+++.|..+.+
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHH
Confidence 3677888888999999888888999999999999999875433 34466888888888 777778889999999999
Q ss_pred HHHhc--CCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccC--CChhhHHHHHHHHHHhccch
Q 002472 457 KLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG--PEPRVNKAAARALAILGENE 524 (918)
Q Consensus 457 ~~Ll~--~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~i~~~a~~al~~l~~~~ 524 (918)
+.++. ..++.|...++.++.-++.-..++....++.|+.+..++-+.. ....+++.+||.+.++....
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 99864 4677888888888999998888888888899999999987653 45689999999999996543
No 125
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.004 Score=64.80 Aligned_cols=164 Identities=23% Similarity=0.281 Sum_probs=127.0
Q ss_pred cccccCcccEEECc----CCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhh-c-cCChHHHHHHHHHHHHHhhC
Q 002472 366 DENAVRQLISMISS----DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVL-K-SFAPEEVKSVLQVVGQLAFA 439 (918)
Q Consensus 366 ~~~~L~~L~~L~ls----~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll-~-~~~~~~~~~~l~~L~~l~~~ 439 (918)
+.|++..|..+.-. +|.....+.+..|..|+|.++....+++.|..+.++.++ + ..++.++...+.++.-++..
T Consensus 281 e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR 360 (461)
T KOG4199|consen 281 ESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR 360 (461)
T ss_pred HccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc
Confidence 44566665554322 233455677889999999999999999999999998884 3 45566677789999999998
Q ss_pred ChHHHHHHhhhchHHHHHHHh-cCC-ChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHH
Q 002472 440 SDTVAQKMLTKDVLKSLKLLC-AHK-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARAL 517 (918)
Q Consensus 440 ~~~~~~~v~~~g~~p~L~~Ll-~~~-~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al 517 (918)
........|+.|+----++-+ .+. ...+|++|++.+.|++..+.++....++.|+ +.|.......++.....+..||
T Consensus 361 ~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~tce~~akaAL 439 (461)
T KOG4199|consen 361 SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHETCEAAAKAAL 439 (461)
T ss_pred CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCccHHHHHHHHH
Confidence 888888899998755444444 343 3479999999999999999988888877666 5666677788888999999999
Q ss_pred HHhccchHHHHHh
Q 002472 518 AILGENESLRRAI 530 (918)
Q Consensus 518 ~~l~~~~~~~~~~ 530 (918)
.-+|.+.+++..-
T Consensus 440 RDLGc~v~lre~w 452 (461)
T KOG4199|consen 440 RDLGCDVYLREEW 452 (461)
T ss_pred HhcCcchhhHHHh
Confidence 9999888877654
No 126
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=4.5e-05 Score=77.17 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcc--cccCCCCCCEEEe
Q 002472 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL--DFRAMAELKILRL 273 (918)
Q Consensus 196 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~--~l~~l~~L~~L~L 273 (918)
+.+.+.|++.++.|+.+. -..+++.|++|.||-|+|+.+ ..+..|++|++|+|..|.|..+.+ -+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666666543 234566666666666666655 345566666666666666655442 2555556666665
Q ss_pred eCCC
Q 002472 274 FGNP 277 (918)
Q Consensus 274 ~~N~ 277 (918)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5554
No 127
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.49 E-value=0.0051 Score=64.27 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=115.5
Q ss_pred eecccccccCcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhh-cc-CChHHHHHHHHHHHHHhhC
Q 002472 362 VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVL-KS-FAPEEVKSVLQVVGQLAFA 439 (918)
Q Consensus 362 ~ip~~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll-~~-~~~~~~~~~l~~L~~l~~~ 439 (918)
.+..+.|.++-+..+.-..++.+++.|+++|.|++...+....+.. .+...++.+ .. .+...+..++++|.++...
T Consensus 48 ~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~ 125 (254)
T PF04826_consen 48 DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT 125 (254)
T ss_pred HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC
Confidence 4455678888888888889999999999999999987777644332 234444432 22 2446678899999999866
Q ss_pred ChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCC-ChhhHHHHHHHHH
Q 002472 440 SDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP-EPRVNKAAARALA 518 (918)
Q Consensus 440 ~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~i~~~a~~al~ 518 (918)
++.. ..+ ...+|.+..|+.+++...+..+++++.|++...+..+.++ .+++...++.|++.. ..++...+.+-..
T Consensus 126 ~~~~-~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 126 NDYH-HML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred cchh-hhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 5543 233 3479999999999999999999999999999999877777 667888888888875 4555666665555
Q ss_pred Hhc
Q 002472 519 ILG 521 (918)
Q Consensus 519 ~l~ 521 (918)
++.
T Consensus 202 ni~ 204 (254)
T PF04826_consen 202 NIN 204 (254)
T ss_pred HHH
Confidence 554
No 128
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.23 E-value=0.012 Score=54.76 Aligned_cols=84 Identities=8% Similarity=0.145 Sum_probs=33.9
Q ss_pred hhcCCCCCccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcc-cCCCC
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLP 197 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~ 197 (918)
.+|.++.+|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|..++.|+.+.+.+ .+..++.. +..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4555566666666553 344433445555555666665543 2333344455555555555543 33333322 33345
Q ss_pred CCcEEeccC
Q 002472 198 VLEKLYLDN 206 (918)
Q Consensus 198 ~L~~L~L~~ 206 (918)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 555555543
No 129
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.15 E-value=0.0017 Score=47.02 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=34.2
Q ss_pred cccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 484 ~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.+++.+++.|+++.|+.++.+.+++++++++||+.++.
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45566779999999999999999999999999999875
No 130
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.03 E-value=7e-05 Score=85.49 Aligned_cols=176 Identities=21% Similarity=0.178 Sum_probs=93.0
Q ss_pred ccEEEeecCCCCCcC----cccccCCCCCCEEeCCCCCCCCCCcc---ccccCC-CCccEEEccCCCCc-----ccCccc
Q 002472 127 LRAVVLTKGVGSGHL----SDGIGVLTRLMRSDLSTSGPGNNMGS---GFCDHW-KTVTAVSLCGLGLS-----ALPVDL 193 (918)
Q Consensus 127 L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l-~~L~~L~L~~n~l~-----~lp~~l 193 (918)
+..|.|.+|.+.... ...+..+.+|..|++++|.+...... ..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677777777776532 23445567777788887773211111 112222 44566677777666 344445
Q ss_pred CCCCCCcEEeccCCCCC-----CCccccc----CCcCcceeeccccccc-----ccchhccCCCC-CcEEEeecCCCCCC
Q 002472 194 TRLPVLEKLYLDNNKLS-----TLPPELG----AMKNLKVLIVDNNMLV-----CVPVELRECVG-LVELSLEHNRLVRP 258 (918)
Q Consensus 194 ~~l~~L~~L~L~~n~l~-----~lp~~l~----~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~-L~~L~L~~N~l~~~ 258 (918)
.....|+.++++.|.+. .++..+. ...++++|++++|.++ .+...+...+. +..|++.+|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55667777777777664 2222332 3556666666666665 12223333444 55566666665432
Q ss_pred c-----ccccCC-CCCCEEEeeCCCCCCC-----c-CcCCCCCCcEEEccCCCCCC
Q 002472 259 L-----LDFRAM-AELKILRLFGNPLEFL-----P-EILPLLKLRHLSLANIRIVA 302 (918)
Q Consensus 259 ~-----~~l~~l-~~L~~L~L~~N~l~~l-----~-~l~~l~~L~~L~L~~N~i~~ 302 (918)
. +.+..+ ..+++++++.|.|+.- . .+..++.++.|.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 223333 4555566666655511 1 23344455555555555543
No 131
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.99 E-value=0.014 Score=41.89 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=34.6
Q ss_pred HHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 002472 443 VAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (918)
Q Consensus 443 ~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~ 480 (918)
..+.+.+.|++|.|++|+.+.+..++..|+++++|++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45678899999999999999999999999999999863
No 132
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.96 E-value=0.017 Score=53.92 Aligned_cols=104 Identities=13% Similarity=0.267 Sum_probs=42.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCcccCcc-cCCCCCCcEEeccCCCCCCCc-ccccCCc
Q 002472 143 DGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLPVLEKLYLDNNKLSTLP-PELGAMK 220 (918)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp-~~l~~l~ 220 (918)
..|.++++|+.+.+..+ ...+....|..+.+|+.+.+..+ +..++.. +.++++|+.+.+.+ .+..++ ..+..++
T Consensus 6 ~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34555666666666542 23444445656666666666554 5544432 44454566666644 333333 2344455
Q ss_pred Ccceeecccccccccch-hccCCCCCcEEEeec
Q 002472 221 NLKVLIVDNNMLVCVPV-ELRECVGLVELSLEH 252 (918)
Q Consensus 221 ~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~ 252 (918)
+|+.+++..+ +..++. .+.++ +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666665543 443322 33343 555555543
No 133
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.054 Score=57.87 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=110.5
Q ss_pred chhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcC
Q 002472 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH 462 (918)
Q Consensus 383 ~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~ 462 (918)
+-.+.++..|..+..+-.+...++..|+..+++..+.+.+.+....+++.++..+-.+......|++.|+.+.|...+.+
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 34455666666666666666788899999999999999999988999999999998888888899999999999999886
Q ss_pred CCh-hHHHHHHHHHHHhhcCcccccceeeccCcccchhccccC--CChhhHHHHHHHHHHhc
Q 002472 463 KNP-EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG--PEPRVNKAAARALAILG 521 (918)
Q Consensus 463 ~~~-~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~i~~~a~~al~~l~ 521 (918)
.++ .+++.|+-|++++......-+......+...+|..++.+ .+...+..+..-++.+.
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 655 677999999999999988766666567778999999998 45555555555555543
No 134
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.63 E-value=0.017 Score=67.49 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=117.8
Q ss_pred cccccCcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHH
Q 002472 366 DENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQ 445 (918)
Q Consensus 366 ~~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~ 445 (918)
..+-++.+..+....+..+.+.|+.+|.+++......+.+...+....+..++...+...+.+.+.++.+++..++....
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33445556566667788999999999999998777777788888877777777776677777899999999989988889
Q ss_pred HHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChh
Q 002472 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPR 508 (918)
Q Consensus 446 ~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 508 (918)
.+.+.|+++.+...+...|.-++.+|+..+..++. ...-.+.+.+.|+++.|..++...+.+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999 444466666899999999988765443
No 135
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.41 E-value=0.00026 Score=80.86 Aligned_cols=182 Identities=21% Similarity=0.176 Sum_probs=118.1
Q ss_pred CCCEEeCCCCCCCCCC---ccccccCCCCccEEEccCCCCc-----ccCcccCCC-CCCcEEeccCCCCC-----CCccc
Q 002472 150 RLMRSDLSTSGPGNNM---GSGFCDHWKTVTAVSLCGLGLS-----ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPE 215 (918)
Q Consensus 150 ~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~ 215 (918)
.+..|.|.+|.+.... +...+..+..|..|++++|.+. .+-..+... ..|++|++..|.++ .+.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3788889988843332 2334566788999999999888 122223333 56788888888887 34456
Q ss_pred ccCCcCcceeeccccccc-----ccchhcc----CCCCCcEEEeecCCCCCCc-----ccccCCCC-CCEEEeeCCCCCC
Q 002472 216 LGAMKNLKVLIVDNNMLV-----CVPVELR----ECVGLVELSLEHNRLVRPL-----LDFRAMAE-LKILRLFGNPLEF 280 (918)
Q Consensus 216 l~~l~~L~~L~Ls~N~l~-----~lp~~l~----~l~~L~~L~L~~N~l~~~~-----~~l~~l~~-L~~L~L~~N~l~~ 280 (918)
+.....|+.++++.|.+. .++..+. ...++++|++++|.++... ..+...+. +..|++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 666888999999999885 2333443 4778888999888876332 12455555 6678888888772
Q ss_pred C------cCcCCC-CCCcEEEccCCCCCCCcCcchhhhhhcccCCccccccccccchh
Q 002472 281 L------PEILPL-LKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAF 331 (918)
Q Consensus 281 l------~~l~~l-~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~ 331 (918)
. |.+..+ ..++.++++.|.|.....-.--........++.+.+..|.+...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2 234445 67788899998887632211111123345666777777766553
No 136
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.35 E-value=0.029 Score=60.50 Aligned_cols=159 Identities=23% Similarity=0.215 Sum_probs=111.1
Q ss_pred ccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccC------ChHHH-HHHHHHHHHHhh
Q 002472 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF------APEEV-KSVLQVVGQLAF 438 (918)
Q Consensus 367 ~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~------~~~~~-~~~l~~L~~l~~ 438 (918)
.+.+..|+.+--|...++.+|.+++||||+-++... ..+.++|.-.-++..|+.. ..+.. .=++..|.+...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 355667777777888899999999999999887777 8899999977777776422 12333 336788899998
Q ss_pred CChHHHHHHhhhchHHHHHHHhc--CCChhHHHHHHHHHHHhh-cCcccccceeeccCcccchhccccC-CChhhHHHHH
Q 002472 439 ASDTVAQKMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLA-FCLENRRILVTSESLRDLLMRLTVG-PEPRVNKAAA 514 (918)
Q Consensus 439 ~~~~~~~~v~~~g~~p~L~~Ll~--~~~~~v~~~al~a~~nl~-~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~i~~~a~ 514 (918)
.++.-...+++.|+|+.|+.++. ..+.......+...+|+. +..++-...-.+.++...+++++.+ .++++++-.-
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 99888889999999999999864 455554444445566653 3334444444566666677776654 5556666555
Q ss_pred HHHHHhccchH
Q 002472 515 RALAILGENES 525 (918)
Q Consensus 515 ~al~~l~~~~~ 525 (918)
..+...+++..
T Consensus 246 eila~~aend~ 256 (604)
T KOG4500|consen 246 EILAKAAENDL 256 (604)
T ss_pred HHHHHHhcCcc
Confidence 56666666653
No 137
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=95.23 E-value=0.015 Score=71.15 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=126.2
Q ss_pred ecccccccCcccEEECcC-CcchhHHHHHHhccCCCCchhh--hHHHhCCCchhHHHhhccCCh----HHHHH---HHHH
Q 002472 363 VGKDENAVRQLISMISSD-NRHVVEQACSALSSLAGDVSVA--MLLMKCDIMQPIIAVLKSFAP----EEVKS---VLQV 432 (918)
Q Consensus 363 ip~~~~~L~~L~~L~ls~-N~~v~e~a~~~L~~L~~~~~~~--~~v~~~~~~~~ll~ll~~~~~----~~~~~---~l~~ 432 (918)
+..+.+....|..-.+.. +..-....+.+|.||+++.... ......|++.-|+.+|....+ .++.+ .|+.
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 334445444444433322 2233344566888888876666 666667888878888764432 34444 4888
Q ss_pred HHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHH
Q 002472 433 VGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKA 512 (918)
Q Consensus 433 L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~ 512 (918)
+..++..++.-.|.+.+..++..|...|++....++.+||.+++|+..-+..-+|++.+.++.+.|..|+.+.+..+...
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G 591 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG 591 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence 88888888888999999999999999999999999999999999999888888888999999999999999999999999
Q ss_pred HHHHHHHhccch
Q 002472 513 AARALAILGENE 524 (918)
Q Consensus 513 a~~al~~l~~~~ 524 (918)
++.||.++....
T Consensus 592 SaaALrNLln~R 603 (2195)
T KOG2122|consen 592 SAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHHhcCC
Confidence 999999986554
No 138
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.06 E-value=0.00073 Score=66.89 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=34.5
Q ss_pred CCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeC
Q 002472 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG 275 (918)
Q Consensus 196 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~ 275 (918)
....+.||++.|++..+-..+..++.|..|+++.|.+..+|..+..+..++++++..|.++..|.+++.++.++++++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 33344444444444433333444444444444444444444444444444444444444444433344444444444433
Q ss_pred CC
Q 002472 276 NP 277 (918)
Q Consensus 276 N~ 277 (918)
|.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 33
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.04 E-value=0.0097 Score=46.18 Aligned_cols=55 Identities=33% Similarity=0.239 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 465 PEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 465 ~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
+.++..|++++|+++.+.....+.. ...+++.|..++.+.+++++..|+|||..+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678899999999887776665554 567889999999999999999999999764
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.061 Score=57.47 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=124.9
Q ss_pred ccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCCh-HHHHHHHHHHHHHhhCChHHH
Q 002472 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP-EEVKSVLQVVGQLAFASDTVA 444 (918)
Q Consensus 367 ~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~-~~~~~~l~~L~~l~~~~~~~~ 444 (918)
++.+..|-.+.-+.+..+++-|.|.++......+.. ..|++.|+...|+..+.+..+ ++..++|=++..++.......
T Consensus 123 ~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 123 LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 344444444444567889999999999999888877 899999999999999876555 555889999999998888888
Q ss_pred HHHhhhchHHHHHHHhcC--CChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 445 QKMLTKDVLKSLKLLCAH--KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 445 ~~v~~~g~~p~L~~Ll~~--~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
...+..+-..-|...+.. .+...++.|+--++++..........+...++...++.+...-+.++++.+..++-..
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 888888779999999988 6777888888889999998887777777778888888888888888888877665333
No 141
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=95.00 E-value=0.038 Score=59.97 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=115.5
Q ss_pred cCcccEEECcCCc--chhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhc-cCChHHHHHHHHHHHHHhhCChHHHHH
Q 002472 370 VRQLISMISSDNR--HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLK-SFAPEEVKSVLQVVGQLAFASDTVAQK 446 (918)
Q Consensus 370 L~~L~~L~ls~N~--~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~ 446 (918)
+..|..+..+.|- .++-++.+.|..+. ...+++.+...+ ..-++.+-+ ...++..+..+..|.++..++++..+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344444444433 34556666665554 223345566555 333333333 233466677889999999999999999
Q ss_pred HhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccc-cceeeccCcccchhccccCCChhhHHHHHHHHHHhccchH
Q 002472 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENR-RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (918)
Q Consensus 447 v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~ 525 (918)
++++|++..+.--.+..++.+.+.+..|+||++.+.-.. +.-+++..+-+.|.-|..+.++-.+..||.|+..++.+++
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE 339 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKE 339 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhh
Confidence 999999998888888889999999999999998766432 2244588888999999999999999999999999999987
Q ss_pred HHHHhh
Q 002472 526 LRRAIR 531 (918)
Q Consensus 526 ~~~~~~ 531 (918)
+.+.++
T Consensus 340 ~E~~Vr 345 (832)
T KOG3678|consen 340 VEREVR 345 (832)
T ss_pred hhHHHh
Confidence 776654
No 142
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.013 Score=35.81 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=9.9
Q ss_pred cceeecccccccccchhcc
Q 002472 222 LKVLIVDNNMLVCVPVELR 240 (918)
Q Consensus 222 L~~L~Ls~N~l~~lp~~l~ 240 (918)
|++|||++|+++.+|..|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 143
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.84 E-value=0.08 Score=40.98 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHh
Q 002472 424 EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (918)
Q Consensus 424 ~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl 478 (918)
.++..++.+|++++.......+. +...++|.|..++.+.+..|+..|++++|+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35667899999987666655444 6678999999999999999999999999986
No 144
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.74 E-value=0.00095 Score=66.08 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=64.2
Q ss_pred ccCCCCccEEEccCCCCcccCcccCCCCCCcEEeccCCCCCCCcccccCCcCcceeecccccccccchhccCCCCCcEEE
Q 002472 170 CDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELS 249 (918)
Q Consensus 170 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 249 (918)
+......+.||++.|++..+...+..++.|..|+++.|++..+|+.++.+..+..+++..|+.+..|.++..++.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 33455666777777776666666666777777788878777777777777777777877788888888888888888877
Q ss_pred eecCCCC
Q 002472 250 LEHNRLV 256 (918)
Q Consensus 250 L~~N~l~ 256 (918)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7777653
No 145
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.52 E-value=0.016 Score=35.42 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=8.8
Q ss_pred ccEEEccCCCCcccCccc
Q 002472 176 VTAVSLCGLGLSALPVDL 193 (918)
Q Consensus 176 L~~L~L~~n~l~~lp~~l 193 (918)
|++|+|++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555444443
No 146
>PRK09687 putative lyase; Provisional
Probab=94.51 E-value=0.18 Score=53.99 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=34.9
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 452 VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 452 ~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
+++.|..++.+.++.|+..|..++|.+..+ +..+.+.|..++.+.++.++++|.++|..++..
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh
Confidence 456666666666666666666666655111 112335555566666666666666666555443
No 147
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.31 E-value=0.082 Score=45.40 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=64.2
Q ss_pred hhHHHhh-ccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceee
Q 002472 412 QPIIAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (918)
Q Consensus 412 ~~ll~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~ 490 (918)
+.+++.+ ..+++.++..++.+|+++. ...++|.|..++.+.++.++..|++++|.+-
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 4566777 6777787788888888432 2356999999999999999999999999873
Q ss_pred ccCcccchhccccCC-ChhhHHHHHHHHH
Q 002472 491 SESLRDLLMRLTVGP-EPRVNKAAARALA 518 (918)
Q Consensus 491 ~~~~~~~L~~ll~~~-~~~i~~~a~~al~ 518 (918)
+..+.+.|.+++.+. +..++..+.++|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 344668888877764 4556888888764
No 148
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.91 E-value=0.076 Score=62.07 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=117.6
Q ss_pred EECcCCcchhHHHHHHhccCCCCchhh-----hHH-HhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhh
Q 002472 376 MISSDNRHVVEQACSALSSLAGDVSVA-----MLL-MKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (918)
Q Consensus 376 L~ls~N~~v~e~a~~~L~~L~~~~~~~-----~~v-~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~ 449 (918)
|-.+.|....|.+.-+|.|+....... ..+ .....+++++.+|..++..++..+.-+|.++... .-.+.++.
T Consensus 527 l~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~lig 604 (717)
T KOG1048|consen 527 LALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKELIG 604 (717)
T ss_pred HHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhhhh
Confidence 345677888888888999998754444 223 5667789999999999999999999999999843 33456777
Q ss_pred hchHHHHHHHhcCCCh------hHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCC-ChhhHHHHHHHHHHhcc
Q 002472 450 KDVLKSLKLLCAHKNP------EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP-EPRVNKAAARALAILGE 522 (918)
Q Consensus 450 ~g~~p~L~~Ll~~~~~------~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~i~~~a~~al~~l~~ 522 (918)
.++||.|++.+.+..+ .....++.++.|+...+-.-+..+.+.+.++.|+.+..+. .++.-|.|+..+..+-.
T Consensus 605 k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 605 KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999987654 4555667889999877766666666888889999887764 35777888888887776
Q ss_pred chHHHHHhhc
Q 002472 523 NESLRRAIRG 532 (918)
Q Consensus 523 ~~~~~~~~~~ 532 (918)
..+++...++
T Consensus 685 y~eLh~~~kk 694 (717)
T KOG1048|consen 685 YKELHFKLKK 694 (717)
T ss_pred HHHHhhhHhh
Confidence 6666665544
No 149
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=93.83 E-value=0.11 Score=57.32 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=49.6
Q ss_pred CCcceEEEecCCCchHHH-HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCC-C--CHHHHHH
Q 002472 537 KQGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKL-M--TLDQCEE 602 (918)
Q Consensus 537 ~~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~-~--s~~~~~~ 602 (918)
..+...++++|||.|.+. .+|+|+++.++ .+.+..++++|.|-|+.+...|.... . +++++.+
T Consensus 37 ~~P~i~ia~SGGG~RAm~~~~G~l~al~~~---GLl~~~tY~sglSGgsWl~~sLy~nn~w~t~v~~l~~ 103 (430)
T cd07202 37 KAPVIAVLGSGGGLRAMIACLGVLSELDKA---GLLDCVTYLAGVSGSTWCMSSLYTEPDWSTKLQTVED 103 (430)
T ss_pred cCCeEEEEecCccHHHHHhccHHHHHhhhC---ChhhhhhhhccccchHHHHHHHHhcCCccccHHHHHH
Confidence 345678999999999966 89999999983 47788999999999998866655542 2 4677654
No 150
>PRK09687 putative lyase; Provisional
Probab=93.70 E-value=0.17 Score=54.06 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=63.7
Q ss_pred ccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhch
Q 002472 373 LISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDV 452 (918)
Q Consensus 373 L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~ 452 (918)
|..+.-..+..++..++++|+.+... .+...+..++.+.++.+...+..+|+++-..... ...+
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a 91 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNV 91 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHH
Confidence 33333455666777777777666531 1233344445555566566666666665421100 1234
Q ss_pred HHHHHHH-hcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 453 LKSLKLL-CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 453 ~p~L~~L-l~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
+|.|..+ +.+.++.|+..|+.++|++....... ...+...+...+.+.+.+++..+.++|..++
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 5566555 45556666666666666653222111 1112233334444445555555555555444
No 151
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=93.25 E-value=0.13 Score=58.32 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=57.1
Q ss_pred CcceEEEecCCCchHHH-HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC-CCCHHHHHHHHHHhhccccCC
Q 002472 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTLDQCEEIYKNLGKLVFAE 614 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~-~~s~~~~~~~y~~~~~~iF~~ 614 (918)
-+...++++|||.|.+. .+|+|.++.+. | +.+...+++|.|.|+.....+... ..+.+++.+...++.+.++..
T Consensus 52 ~P~Igia~SGGGyRAml~gaG~l~al~~~-G--LLq~~tYlaGlSGg~Wl~gSLy~npn~ss~dl~~~iw~l~~~i~~~ 127 (541)
T cd07201 52 VPVVAVMTTGGGTRALTSMYGSLLGLQKL-G--LLDCVSYITGLSGSTWTMATLYEDPNWSQKDLEGPIEEARKHVTKS 127 (541)
T ss_pred CCeEEEEecCccHHHHHhccHHHHhhhcC-C--chhhhheecccCccHHHHHHHHcCCCCchhhHHHHHHHHHhhhccc
Confidence 35677999999999977 88999999773 4 888899999999999986666655 566667766655555555543
No 152
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=93.22 E-value=0.16 Score=46.20 Aligned_cols=117 Identities=17% Similarity=0.060 Sum_probs=97.3
Q ss_pred CCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHH
Q 002472 380 DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLL 459 (918)
Q Consensus 380 ~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~L 459 (918)
.|.+-.++....|.|++-|+.+...+.+++++...+..+..++...+.-+...|++++. +.....-+.+++-+|-....
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFV 107 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEee
Confidence 35677788888999999888888999999999999999999888888889999999984 44666788999999999998
Q ss_pred hcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccc
Q 002472 460 CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDL 497 (918)
Q Consensus 460 l~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~ 497 (918)
+.+........|+.++-.+.++....+..+....+..+
T Consensus 108 lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~ 145 (173)
T KOG4646|consen 108 LSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRT 145 (173)
T ss_pred cCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHH
Confidence 88888888888888888899998877766655444444
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=92.76 E-value=0.052 Score=38.86 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=32.8
Q ss_pred ccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 485 RRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 485 ~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.++.+++.++++.|+.++.+.++++++.++|++.++.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4456668899999999999999999999999999885
No 154
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.22 Score=58.43 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=113.4
Q ss_pred cCcccEE-ECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhh-ccCChHHHHHHHHHHHHHhhCChHHHHH
Q 002472 370 VRQLISM-ISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQK 446 (918)
Q Consensus 370 L~~L~~L-~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 446 (918)
.|.|..| ...+|.++.-.||++|.++....|.- ..|++.++++-++.-| .-.-..+..+++++|+.+-... -..
T Consensus 213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~A 289 (1051)
T KOG0168|consen 213 VPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKA 289 (1051)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHH
Confidence 3444443 34567889999999999999766666 8888989999887753 4444567788899988776432 235
Q ss_pred HhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCc--ccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL--ENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 447 v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
+..+|++-.....+.=....+|+.|+...+|.+..- +....++ .++|.|..++.+.+....+.+|-++..+.+.
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 788999888888888888899999999999987544 3332233 6789999999999999999999999888644
No 155
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.24 E-value=0.089 Score=29.83 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=4.8
Q ss_pred CccEEEccCCCCcc
Q 002472 175 TVTAVSLCGLGLSA 188 (918)
Q Consensus 175 ~L~~L~L~~n~l~~ 188 (918)
+|+.|+|++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 156
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.14 E-value=0.086 Score=29.89 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=5.6
Q ss_pred CCcEEeccCCCCCCC
Q 002472 198 VLEKLYLDNNKLSTL 212 (918)
Q Consensus 198 ~L~~L~L~~n~l~~l 212 (918)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344455555544443
No 157
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=90.74 E-value=0.41 Score=54.85 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=108.7
Q ss_pred CcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHH
Q 002472 381 NRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLL 459 (918)
Q Consensus 381 N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~L 459 (918)
...+...++-.+.+++.....+ .-.-..++..++++++..+...+...++.++.+++..=..-....++.|.+..|..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 3444555555555555333333 225566888999999977777777888999999986444445578899999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCcccccceeeccCcc-cchhccccCCChhhHHHHHHHHHHhccc
Q 002472 460 CAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLR-DLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 460 l~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~-~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
+...+...+..++|++.++.++.++..+....+.+. ..++.+.+.++..+++.+-..+.++..+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999877766555433 4455677889999999998888888766
No 158
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.33 E-value=0.4 Score=41.04 Aligned_cols=61 Identities=33% Similarity=0.444 Sum_probs=50.5
Q ss_pred HHHHHHHh-cCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 453 LKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 453 ~p~L~~Ll-~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
+|.|.+.+ .+.++.++..|++++|.+. +..+.+.|..++.+.++.++..+++++..++..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 46778877 8899999999999999331 2356799999999999999999999999997554
No 159
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.18 E-value=0.19 Score=45.35 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=57.0
Q ss_pred chHHHHHHHh-cCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 451 DVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 451 g~~p~L~~Ll-~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
.++..|..++ .+.++.+..-|+.-+|.++..-..-+.++...++...++.|+.+++++++++|-.|+.-+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3577888888 445666666688889999988888888888999999999999999999999999988655
No 160
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.04 E-value=0.098 Score=61.02 Aligned_cols=187 Identities=24% Similarity=0.215 Sum_probs=104.0
Q ss_pred cCCCCCccEEEeecCCCCCc--CcccccCCCCCCEEeCCCCCCCCCC----ccccccCCCCccEEEccCCC-CcccC-cc
Q 002472 121 VKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTSGPGNNM----GSGFCDHWKTVTAVSLCGLG-LSALP-VD 192 (918)
Q Consensus 121 ~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~l~~L~~L~L~~n~-l~~lp-~~ 192 (918)
...+++|+.|.+..+.-... +-.....+++|+.|+++++...... .......+++|+.|+++++. ++..- ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34478888888877632222 2234456788888888863101111 12234456888888888887 55221 11
Q ss_pred c-CCCCCCcEEeccCCC-CC--CCcccccCCcCcceeeccccccc---ccchhccCCCCCcEEEeecCC----CCC----
Q 002472 193 L-TRLPVLEKLYLDNNK-LS--TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNR----LVR---- 257 (918)
Q Consensus 193 l-~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~----l~~---- 257 (918)
+ ..+++|++|.+.++. ++ .+-.....+++|++|+|+.+... .+.....++++|+.|.+.... ++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~ 343 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS 343 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH
Confidence 2 237788888877776 55 33333466778888888876543 233333445555554432221 110
Q ss_pred --------Cc--ccccCCCCCCEEEeeCCCCCCCc---CcCCCCC--------------CcEEEccCCCCCCCcCcc
Q 002472 258 --------PL--LDFRAMAELKILRLFGNPLEFLP---EILPLLK--------------LRHLSLANIRIVADENLR 307 (918)
Q Consensus 258 --------~~--~~l~~l~~L~~L~L~~N~l~~l~---~l~~l~~--------------L~~L~L~~N~i~~~~~l~ 307 (918)
.. ..+..+++|+.+.+..+.+.... .+..+++ ++.|+++.........+.
T Consensus 344 ~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 344 GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchH
Confidence 11 12567778888877776643221 2333443 467777766655443333
No 161
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.76 E-value=0.29 Score=60.60 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=95.7
Q ss_pred CCCceeecccccccCcccEEECcCC----cchhHHHHHHhccCCC----CchhhhHHHhCCCchhHHHhhccCChHHHHH
Q 002472 357 QENRVVVGKDENAVRQLISMISSDN----RHVVEQACSALSSLAG----DVSVAMLLMKCDIMQPIIAVLKSFAPEEVKS 428 (918)
Q Consensus 357 ~~N~l~ip~~~~~L~~L~~L~ls~N----~~v~e~a~~~L~~L~~----~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~ 428 (918)
..|+-.|...-+.|.-|..+.-... -.+.|.+.-.|.|... ...+++.+.+.+++..||+.|++..-.++.+
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeec
Confidence 3454445444455555555443221 2455555556665544 3344478889999999999999999999999
Q ss_pred HHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCc
Q 002472 429 VLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL 482 (918)
Q Consensus 429 ~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~ 482 (918)
++.+|-+|...+.+..+++.+.||++-|..|+.+++.-+-..+..++-|+....
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999988888888899886544
No 162
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=88.60 E-value=0.42 Score=54.50 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.3
Q ss_pred CcceEEEecCCCchHHH-HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC-CCCH---HHHHH
Q 002472 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTL---DQCEE 602 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~-~~s~---~~~~~ 602 (918)
-+...++.+|||.|.+. -+|+|+++.+ . .+.+...+++|.|-|+.....++.. .++- +++.+
T Consensus 43 ~P~Iaia~SGGGyRAMl~gaG~l~Ald~-g--GLLq~aTYlaGLSGgsWlvgsl~~n~nf~sv~~~~l~~ 109 (505)
T cd07200 43 VPVIALLGSGGGFRAMVGMSGAMKALYD-S--GVLDCATYVAGLSGSTWYMSTLYSHPDFPEKGPGEINK 109 (505)
T ss_pred CCeEEEEecCccHHHHhhccHHHHhhhc-C--ChhhhhhhhhcCCccHHHHHHHHhCCCCCccCHHHHHH
Confidence 35677999999999977 7899999988 3 4788899999999999876666554 3443 55544
No 163
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.30 E-value=0.44 Score=30.28 Aligned_cols=16 Identities=56% Similarity=0.781 Sum_probs=7.2
Q ss_pred CCcEEeccCCCCCCCc
Q 002472 198 VLEKLYLDNNKLSTLP 213 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp 213 (918)
+|++|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00369 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 3444444444444444
No 164
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.30 E-value=0.44 Score=30.28 Aligned_cols=16 Identities=56% Similarity=0.781 Sum_probs=7.2
Q ss_pred CCcEEeccCCCCCCCc
Q 002472 198 VLEKLYLDNNKLSTLP 213 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp 213 (918)
+|++|+|++|+|+.+|
T Consensus 3 ~L~~L~L~~N~l~~lp 18 (26)
T smart00370 3 NLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCEEECCCCcCCcCC
Confidence 3444444444444444
No 165
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.68 E-value=2.1 Score=54.01 Aligned_cols=114 Identities=19% Similarity=0.136 Sum_probs=64.7
Q ss_pred ECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHH
Q 002472 377 ISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (918)
Q Consensus 377 ~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L 456 (918)
.-..++.++..++++|+.+.. ...++..+...+++++..+..+|..+.-. +..+++.|
T Consensus 723 L~D~d~~VR~~Av~aL~~~~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L 780 (897)
T PRK13800 723 LGDPDHRVRIEAVRALVSVDD-------------VESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAV 780 (897)
T ss_pred hcCCCHHHHHHHHHHHhcccC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHH
Confidence 345677899999999998742 13345556666677666666666655311 12235666
Q ss_pred HHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhcc
Q 002472 457 KLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 457 ~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~ 522 (918)
..++.+.++.|+..|+.+++.+.... .+...+...+.+.++.++..|.++|..++.
T Consensus 781 ~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 781 RALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 66666666666666666666552110 011223444445555555555555555543
No 166
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.53 E-value=0.53 Score=29.92 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.8
Q ss_pred cCcceeecccccccccchh
Q 002472 220 KNLKVLIVDNNMLVCVPVE 238 (918)
Q Consensus 220 ~~L~~L~Ls~N~l~~lp~~ 238 (918)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 167
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.53 E-value=0.53 Score=29.92 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.8
Q ss_pred cCcceeecccccccccchh
Q 002472 220 KNLKVLIVDNNMLVCVPVE 238 (918)
Q Consensus 220 ~~L~~L~Ls~N~l~~lp~~ 238 (918)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 168
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.41 E-value=1 Score=56.87 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=78.6
Q ss_pred CcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhh
Q 002472 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (918)
Q Consensus 371 ~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~ 450 (918)
+.|..+.-..++.|+..++.+|+.+..... ...+.++.+++..++.++..++.+|..+... .
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~ 806 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP----------P 806 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------c
Confidence 445555556788999999999998874321 1135566667777777777788888766421 1
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 451 g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.+.+.|...+.+.++.|+..|+.+++.+. .....+.|+.++.+++..+++++.++|..+.
T Consensus 807 ~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 DDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 11244666666667777777777776432 1223366677777777777777777777664
No 169
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.59 E-value=0.18 Score=58.74 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=84.3
Q ss_pred cCCCCCCEEeCCCCCCCCCC-ccccccCCCCccEEEccCC--CCccc----CcccCCCCCCcEEeccCCC-CCCCc-ccc
Q 002472 146 GVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGL--GLSAL----PVDLTRLPVLEKLYLDNNK-LSTLP-PEL 216 (918)
Q Consensus 146 ~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n--~l~~l----p~~l~~l~~L~~L~L~~n~-l~~lp-~~l 216 (918)
..+++|+.|.+.++..+... .-.....+++|+.|+++++ .+... ......+.+|+.|+++++. ++..- ..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34789999999988622221 3345568899999999974 22211 1234467899999999998 66322 223
Q ss_pred -cCCcCcceeeccccc-cc--ccchhccCCCCCcEEEeecCCCCCCc---ccccCCCCCCEEEe
Q 002472 217 -GAMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRLVRPL---LDFRAMAELKILRL 273 (918)
Q Consensus 217 -~~l~~L~~L~Ls~N~-l~--~lp~~l~~l~~L~~L~L~~N~l~~~~---~~l~~l~~L~~L~L 273 (918)
..+++|++|.+.++. ++ .+-.....+++|++|+++++...... ....++++|+.|.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 347899999987776 55 44445567889999999988753111 11345666666554
No 170
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.58 E-value=0.95 Score=49.47 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=103.2
Q ss_pred EECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhcc----CChHHHHHHHHHHHHHhhCChHHHHHHhhhc
Q 002472 376 MISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKS----FAPEEVKSVLQVVGQLAFASDTVAQKMLTKD 451 (918)
Q Consensus 376 L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g 451 (918)
+.-+++..+...++..|..+....+....-...+++..++..+.. .+.+.+..++++|.++. ..+.......+.|
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~ 191 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSN 191 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcC
Confidence 334567788999999999888665555222113444666666553 22344566899999998 6777788889999
Q ss_pred hHHHHHHHh-------cCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhcccc-CCChhhHHHHHHHHHHhccc
Q 002472 452 VLKSLKLLC-------AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 452 ~~p~L~~Ll-------~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~i~~~a~~al~~l~~~ 523 (918)
.++.|..++ ...+...+..++-+++-+.|..+...++. ..++++.|+.++. +..+.+.+-+..++.++...
T Consensus 192 ~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 192 GVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 999999999 23455788899999999999988877766 5558899888776 47788888888899888755
Q ss_pred h
Q 002472 524 E 524 (918)
Q Consensus 524 ~ 524 (918)
.
T Consensus 271 ~ 271 (312)
T PF03224_consen 271 A 271 (312)
T ss_dssp S
T ss_pred c
Confidence 4
No 171
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=85.47 E-value=0.82 Score=53.04 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=47.6
Q ss_pred CcceEEEecCCCchHHH-HHHHHHHHHHhcC----CCCccccceeeecChHHHHHHHHHcCCCC
Q 002472 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTG----KRIHELFDLVCGTSTGGMLAIALAVKLMT 596 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~----~~~~~~fD~i~GTS~Gaiia~~l~~~~~s 596 (918)
.+...++++|||.|.+. .+|+|.++.++.. ..+.+...+++|.|.|+.+...++....+
T Consensus 75 ~P~Igia~SGGGyRAml~gaG~l~ald~R~~~~~lgGLLq~~tYlaGlSGgsWlv~sl~~nnf~ 138 (549)
T smart00022 75 VPVIAIAGSGGGFRAMVGGAGVLKAMDNRTDGHGLGGLLQSATYLAGLSGGTWLVGTLASNNFT 138 (549)
T ss_pred CceEEEEecCCCHHHHHhccHHHHHhhhcccccccccHhhhhhhhhccchHHHHHHHHhhCCCc
Confidence 35667999999999977 8999999998642 23678889999999999988888765443
No 172
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=3.6 Score=48.86 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHHh-hCChHHHHHHhhhchHHHHHHHhcCC-ChhHHHHHHHHHHHhhcCcccccceeeccCcccchh
Q 002472 422 APEEVKSVLQVVGQLA-FASDTVAQKMLTKDVLKSLKLLCAHK-NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLM 499 (918)
Q Consensus 422 ~~~~~~~~l~~L~~l~-~~~~~~~~~v~~~g~~p~L~~Ll~~~-~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~ 499 (918)
++..+.+++--|+++. +++++...-+--.-++|.|+.|+.++ +..+...|+||+-++.-.-.....++++.+++|+|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 5666666776666554 35554444333346799999999876 568999999999999877777788888999999998
Q ss_pred c-cccCCChhhHHHHHHHHHHhc
Q 002472 500 R-LTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 500 ~-ll~~~~~~i~~~a~~al~~l~ 521 (918)
. |+...=-++.+.+-.|+..|.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHH
Confidence 7 444444567777777776664
No 173
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=2.1 Score=47.38 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=92.9
Q ss_pred hhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCC
Q 002472 384 VVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (918)
Q Consensus 384 v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~ 463 (918)
+...++.-|-|++.+...-....+-+++..++..|...+.+...-....|+.+..-. +....+.+-|++.+|.+|....
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCC
Confidence 444566677888876555566667788888888888777655544455555554333 2334677889999999999999
Q ss_pred ChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCC
Q 002472 464 NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE 506 (918)
Q Consensus 464 ~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 506 (918)
.+.....+++-+.|+.|....+..+| ..|.+|.+..++.+..
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv-~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMV-NGGLLPHLASLLDSDT 399 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHh-hccchHHHHHHhCCcc
Confidence 99999989999999999999988877 8999999999997754
No 174
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.94 E-value=2 Score=49.60 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhcc
Q 002472 422 APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRL 501 (918)
Q Consensus 422 ~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~l 501 (918)
+...+..|+-|+..+...-+.-....-...++.+|++++......|+..++.|+-|++..=.+-+...+..++++.+...
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 34445566766666653322222234556889999999999999999999999999998888878878899999999999
Q ss_pred ccCCChhhHHHHHHHHHHhccchHHHHH
Q 002472 502 TVGPEPRVNKAAARALAILGENESLRRA 529 (918)
Q Consensus 502 l~~~~~~i~~~a~~al~~l~~~~~~~~~ 529 (918)
+...++..++.+.|++.++.++.+...+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999887655443
No 175
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.91 E-value=1.3 Score=50.99 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=78.6
Q ss_pred CchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhh--------chHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 002472 410 IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK--------DVLKSLKLLCAHKNPEVQRFALLAVGNLAFC 481 (918)
Q Consensus 410 ~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~--------g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~ 481 (918)
+++.|.++|.+++-.....++.+|..++-.+- ..++. =.||++.++..|..+.++..|+.++-.+..-
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa----~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSA----QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhH----HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 35666677777776667778999988884332 22322 3489999999999999999888776655443
Q ss_pred cccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 482 LENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 482 ~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
..+.-...++ .+++.+..+....++++||..|.++.++-+..
T Consensus 205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence 3333223333 56677788889999999999999999986553
No 176
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=84.31 E-value=0.65 Score=53.09 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=47.8
Q ss_pred CcceEEEecCCCchHHH-HHHHHHHHHHhcCC----CCccccceeeecChHHHHHHHHHcCCCCHH
Q 002472 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGK----RIHELFDLVCGTSTGGMLAIALAVKLMTLD 598 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~~----~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~ 598 (918)
.|+-.++.+|||.|.+. -.|+|.++.++.+- .+.+..++|+|.|-|+....-|+.......
T Consensus 47 ~P~vaIa~SGGG~RAMl~g~G~Laamder~~~~~l~GLLqs~tYlaGlSGstW~vssLa~nn~~s~ 112 (571)
T KOG1325|consen 47 GPVVGIAGSGGGLRAMLSGAGALAAMDERTDNAGLGGLLQSATYLAGLSGGSWLVSSLAVNNFTSI 112 (571)
T ss_pred CCeEEEEecCCCHHHHhhhhHHHHHHHhhccCCcccchhhhhhhhcccCCCceeeeeeEECCchHh
Confidence 45667999999999987 67799999886321 367889999999999988777776544433
No 177
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.95 E-value=1.9 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 002472 452 VLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (918)
Q Consensus 452 ~~p~L~~Ll~~~~~~v~~~al~a~~nl~~ 480 (918)
++|.+.+++.+.++.|+..|..+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999874
No 178
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=83.21 E-value=5 Score=44.05 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=83.5
Q ss_pred HHHhCC-CchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcC-----CChhHHHHHHHHHHH
Q 002472 404 LLMKCD-IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH-----KNPEVQRFALLAVGN 477 (918)
Q Consensus 404 ~v~~~~-~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~-----~~~~v~~~al~a~~n 477 (918)
.+...+ +...++..+.+.+...+..+.-++++++..+ ...-.+++.|.|.+|..++.. ++..+|..++.|+.|
T Consensus 309 ~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 309 KLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 334333 4455555667777777888888999999555 444467788999999999875 567889999999999
Q ss_pred hhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 478 LAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
++.-..+...++ .+|+.+.++..+....+.+...---+++.+
T Consensus 388 l~IPv~nka~~~-~aGvteaIL~~lk~~~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 388 LMIPVSNKAHFA-PAGVTEAILLQLKLASPPVTFKLLGTLRMI 429 (604)
T ss_pred ccccCCchhhcc-ccchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999888877766 788888877777766665554444444443
No 179
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.21 E-value=3.3 Score=36.35 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCCh
Q 002472 428 SVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEP 507 (918)
Q Consensus 428 ~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~ 507 (918)
.|+-+|...+.+-...+..-+ ..++|.+...+.+.+.+|+..|+.++.|++.......-. --..+.+.|.++....++
T Consensus 5 ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCch
Confidence 456667666555544443333 347889999999999999999999999998665432211 235678888999999999
Q ss_pred hhHHHHHHHH
Q 002472 508 RVNKAAARAL 517 (918)
Q Consensus 508 ~i~~~a~~al 517 (918)
+++..|+...
T Consensus 83 ~Vr~~a~~Ld 92 (97)
T PF12755_consen 83 NVRSAAELLD 92 (97)
T ss_pred hHHHHHHHHH
Confidence 9988775443
No 180
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3.1.1.5 from EC and cytosolic phospholipase A2 which also has a C2 domain IPR000008 from INTERPRO. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capable in vitro of hydrolyzing all phospholipids extractable from yeast cells []. Cytosolic phospholipase A2 associates with natural membranes in response to physiological increases in Ca2+ and selectively hydrolyses arachidonyl phospholipids [], the aligned region corresponds the carboxy-terminal Ca2+-independent catalytic domain of the protein as discussed in [].; GO: 0004620 phospholipase activity, 0009395 phospholipid catabolic process; PDB: 1CJY_B.
Probab=83.20 E-value=1.5 Score=50.73 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=34.6
Q ss_pred EEEecCCCchHHH-HHHHHHHHHHhcC-----CCCccccceeeecChHHHHHHHHH
Q 002472 542 ILSMDGGGMKGLA-TVQILKEIEKGTG-----KRIHELFDLVCGTSTGGMLAIALA 591 (918)
Q Consensus 542 iL~LdGGG~rG~~-~~~vL~~Le~~~~-----~~~~~~fD~i~GTS~Gaiia~~l~ 591 (918)
.++.+|||.|.+. .+|+|.++..+.. ..+.+..++++|.|-|+.....++
T Consensus 2 aia~SGGG~RAml~gaG~l~Ald~R~~~~~~~gGLLq~~tY~sGlSGgsW~~~sl~ 57 (491)
T PF01735_consen 2 AIAGSGGGYRAMLAGAGVLSALDSRNPGANGTGGLLQCATYISGLSGGSWLVGSLY 57 (491)
T ss_dssp EEEE---HHHHHHHHHHHHHHHH--------HCS-GGGECEEEE-HHHHHHHHHH-
T ss_pred eEEecCchHHHHHHHHHHHHHhhhhccccccccchhhhhhhhhhcCcchhhhhhhh
Confidence 4899999999966 8999999984321 247889999999999999877774
No 181
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.79 E-value=7.1 Score=44.09 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=83.8
Q ss_pred CcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhh
Q 002472 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (918)
Q Consensus 371 ~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~ 450 (918)
..|....-..+..+...+..+|+.+... .....++..++..++.+...++.++.. ...
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~------------r~~ 146 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGA------------HRH 146 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHh------------hcc
Confidence 3333333345555777777778777632 234556666777666666566655543 223
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 451 g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
...+.|..++.+.++.|+..|++++|.+-. ....+.|...+.+.++.++..+.+++..++...
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~ 209 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL 209 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh
Confidence 456789999999999999999999997542 233455777789999999999999999887744
No 182
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.56 E-value=3.9 Score=42.25 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=85.0
Q ss_pred CCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhch-HHHHHH
Q 002472 380 DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDV-LKSLKL 458 (918)
Q Consensus 380 ~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~-~p~L~~ 458 (918)
.+..+...++..+..+.......-.-.-..+++.++..+......+...+-.+|..++.... +...+ .+.+..
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~ 138 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQ 138 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHH
Confidence 34567788888887777432222111123345667777777666666778888888886543 11223 567777
Q ss_pred HhcCCChhHHHHHHHHHHHhhcCcccccceeec----cCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 459 LCAHKNPEVQRFALLAVGNLAFCLENRRILVTS----ESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 459 Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
...++++.++..++..+..+..........+.. ..+.+.+..++.+.++++|+.|..++..+...-
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 889999999999998888776655521121111 457788899999999999999999998885553
No 183
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=78.22 E-value=1 Score=49.24 Aligned_cols=174 Identities=16% Similarity=0.044 Sum_probs=109.2
Q ss_pred CCCCCccEEEeecCC-CCCcCc-ccccCCCCCCEEeCCCCCCCCCC-ccccccCCCCccEEEccCCC-CcccC--cccCC
Q 002472 122 KRREPLRAVVLTKGV-GSGHLS-DGIGVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLG-LSALP--VDLTR 195 (918)
Q Consensus 122 ~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~lp--~~l~~ 195 (918)
..+..+..+++.++. +++.-- ..-..+..|+.|+.+++...... +-....+..+|+.|-+++++ ++..- .--.+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 455667777766653 343211 11135678999999987622222 22234567899999999886 33111 11236
Q ss_pred CCCCcEEeccCCCCC---CCcccccCCcCcceeeccccccc------ccchhccCCCCCcEEEeecCCCCCCc--ccccC
Q 002472 196 LPVLEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNMLV------CVPVELRECVGLVELSLEHNRLVRPL--LDFRA 264 (918)
Q Consensus 196 l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~N~l~------~lp~~l~~l~~L~~L~L~~N~l~~~~--~~l~~ 264 (918)
+++|+.|++..+... .+..--.+++.|+.|.|+++.+. .+...-..+..|+.|-|+++...... ..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 788999999988766 23322357889999999987644 22333456778999999988754221 34788
Q ss_pred CCCCCEEEeeCCCCC---CCc-CcCCCCCCcEEEc
Q 002472 265 MAELKILRLFGNPLE---FLP-EILPLLKLRHLSL 295 (918)
Q Consensus 265 l~~L~~L~L~~N~l~---~l~-~l~~l~~L~~L~L 295 (918)
+++|+.+++.+++-- .+. .-.+++++++..+
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 889999999877633 111 2336666666544
No 184
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=77.39 E-value=1.4 Score=50.69 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=54.5
Q ss_pred CcceEEEecCCCchHHH-HHHHHHHHHHhcC-------CCCccccceeeecChHHHHHHHHHcCCC-CHHHHH-HHHHHh
Q 002472 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTG-------KRIHELFDLVCGTSTGGMLAIALAVKLM-TLDQCE-EIYKNL 607 (918)
Q Consensus 538 ~~~riL~LdGGG~rG~~-~~~vL~~Le~~~~-------~~~~~~fD~i~GTS~Gaiia~~l~~~~~-s~~~~~-~~y~~~ 607 (918)
-+...++++|||.|.+. -+|+|.++..+.. -.+.+...+++|.|-|+.+...|+.... +++++. .-..++
T Consensus 62 ~P~Igia~SGGGyRAMl~GaG~l~AlD~Rt~~~~~~glgGLLQsatYlaGLSGGsWlvgSl~~Nnf~sv~~l~~~~iW~l 141 (552)
T cd07203 62 GPRIGIAVSGGGYRAMLTGAGAIAAMDNRTDNATEHGLGGLLQSSTYLSGLSGGSWLVGSLASNNFTSVQDLLADSIWNL 141 (552)
T ss_pred CCeEEEEecCccHHHHHhccHHHHhhhcccccccccccccHHHHhhHhhhcCccchhhhhhhhCCCCCHHHHhhcchhhh
Confidence 35667999999999977 8899999987532 1366788999999999998877776543 456654 112234
Q ss_pred hccccCC
Q 002472 608 GKLVFAE 614 (918)
Q Consensus 608 ~~~iF~~ 614 (918)
...++..
T Consensus 142 ~~si~~p 148 (552)
T cd07203 142 DHSIFNP 148 (552)
T ss_pred ccccccC
Confidence 4555543
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.34 E-value=1.5 Score=29.20 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=24.1
Q ss_pred ccchhccccCCChhhHHHHHHHHHHhcc
Q 002472 495 RDLLMRLTVGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 495 ~~~L~~ll~~~~~~i~~~a~~al~~l~~ 522 (918)
+|.+.+++.++++++|+.|++++..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999988764
No 186
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.26 E-value=4.1 Score=36.96 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=51.7
Q ss_pred chhHHHhhc-cCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 002472 411 MQPIIAVLK-SFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (918)
Q Consensus 411 ~~~ll~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~ 480 (918)
+..|+.+|. +.++..+.-|+--+++++...+.....+-+-|+-.++-+|+.|.++.|+.+|+.|+.-+..
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445566663 4344555557777888887766667777788999999999999999999999999887654
No 187
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.25 E-value=3.8 Score=47.35 Aligned_cols=156 Identities=16% Similarity=0.161 Sum_probs=104.7
Q ss_pred ccccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhC----CCchhHHHhhccCChHHHHHHHHHHHHHhhCCh
Q 002472 367 ENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKC----DIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASD 441 (918)
Q Consensus 367 ~~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~----~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~ 441 (918)
-..+|.|..+.-+.....+|.|..||..|+.|+.+. +.-... -.++.+++..+++.+..+..++.|+..++....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 345777777766776678999999999999988877 331112 224455667788888888889999998876443
Q ss_pred HHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 442 TVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 442 ~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.....-++ --+..|-.|....++.|+++.++++.-+.--..++...- =.++++..++..+..++.+.-|||.=...++
T Consensus 207 qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 22111111 234456666678899999999999876643322221111 1245566666777888999999998776676
Q ss_pred cch
Q 002472 522 ENE 524 (918)
Q Consensus 522 ~~~ 524 (918)
+.+
T Consensus 285 eqp 287 (885)
T KOG2023|consen 285 EQP 287 (885)
T ss_pred cCc
Confidence 665
No 188
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.49 E-value=1.3 Score=48.42 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=102.3
Q ss_pred hcCCCCCccEEEeecCCCCC-cCcccc-cCCCCCCEEeCCCCCCCCCC-ccccccCCCCccEEEccCCCCc---ccCccc
Q 002472 120 VVKRREPLRAVVLTKGVGSG-HLSDGI-GVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLGLS---ALPVDL 193 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~---~lp~~l 193 (918)
.-..+..|+.|+.++....+ ..-..+ .+..+|+.|.++.++.++.. +...-.+.+.|+.|++..+... .+-..-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 34567788999998865432 222333 46789999999998743332 2222346789999999998755 233333
Q ss_pred CCCCCCcEEeccCCCCC-C-----CcccccCCcCcceeeccccccc--ccchhccCCCCCcEEEeecCCCCC-Cc--ccc
Q 002472 194 TRLPVLEKLYLDNNKLS-T-----LPPELGAMKNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVR-PL--LDF 262 (918)
Q Consensus 194 ~~l~~L~~L~L~~n~l~-~-----lp~~l~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N~l~~-~~--~~l 262 (918)
.+++.|+.|.|+++.+. . +...-..+..|+.|.|+++... ..-+.+..+++|+.+++-+++-.. .. +.-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 47889999999988654 2 2233356788999999998866 444567888999999987766321 11 223
Q ss_pred cCCCCCCEEEe
Q 002472 263 RAMAELKILRL 273 (918)
Q Consensus 263 ~~l~~L~~L~L 273 (918)
.+++++++.-+
T Consensus 449 ~~lp~i~v~a~ 459 (483)
T KOG4341|consen 449 THLPNIKVHAY 459 (483)
T ss_pred hhCccceehhh
Confidence 56777776554
No 189
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.01 E-value=1.9 Score=27.43 Aligned_cols=16 Identities=44% Similarity=0.791 Sum_probs=8.7
Q ss_pred CCcEEeccCCCCCCCc
Q 002472 198 VLEKLYLDNNKLSTLP 213 (918)
Q Consensus 198 ~L~~L~L~~n~l~~lp 213 (918)
+|+.|++++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4555555555555555
No 190
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=74.98 E-value=7.4 Score=35.84 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=68.0
Q ss_pred CCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHH
Q 002472 380 DNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLL 459 (918)
Q Consensus 380 ~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~L 459 (918)
.|..+.+.++-+|.|++.+..+...+.+++.++..+..+.++....+..++-.+..+.+.......++....++....+.
T Consensus 70 ~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 70 QNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred ccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 57788899999999999998888889999999988888889888889999999999998887777777777666666654
Q ss_pred h
Q 002472 460 C 460 (918)
Q Consensus 460 l 460 (918)
-
T Consensus 150 ~ 150 (173)
T KOG4646|consen 150 R 150 (173)
T ss_pred H
Confidence 3
No 191
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=10 Score=46.84 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred CCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCCh-HHHHHHHHHHHHHhhCChHHHHHHhhhchHH-HH
Q 002472 380 DNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAP-EEVKSVLQVVGQLAFASDTVAQKMLTKDVLK-SL 456 (918)
Q Consensus 380 ~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~-~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p-~L 456 (918)
..+.|+..||.++|-++.+...- +.-.+.-+.+.++..+..... .++..+..++-++.-.++..+-.-.-.+.|. .|
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45788999999999999876665 444455555556666665544 5556677777777655554432223346677 77
Q ss_pred HHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCC-hhhHHHHH---HHHHHhc
Q 002472 457 KLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE-PRVNKAAA---RALAILG 521 (918)
Q Consensus 457 ~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~i~~~a~---~al~~l~ 521 (918)
..|+.+..+.++..++.++|.+|...+..-..- -..++|+|.+++...+ .+.+.-.. .+++.++
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 777888899999999999999987766543322 3457788888887755 44443333 3444443
No 192
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.23 E-value=1.9 Score=27.44 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=11.4
Q ss_pred Ccceeecccccccccch
Q 002472 221 NLKVLIVDNNMLVCVPV 237 (918)
Q Consensus 221 ~L~~L~Ls~N~l~~lp~ 237 (918)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776664
No 193
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.92 E-value=0.43 Score=47.06 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCcEEeccCC-CCCCCc-ccccCCcCcceeecc
Q 002472 197 PVLEKLYLDNN-KLSTLP-PELGAMKNLKVLIVD 228 (918)
Q Consensus 197 ~~L~~L~L~~n-~l~~lp-~~l~~l~~L~~L~Ls 228 (918)
++|+.|+|++| +||+-- ..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 45555555544 344211 234555555555553
No 194
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.92 E-value=3.1 Score=26.59 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=11.4
Q ss_pred CCCcEEEccCCCCCCCcCc
Q 002472 288 LKLRHLSLANIRIVADENL 306 (918)
Q Consensus 288 ~~L~~L~L~~N~i~~~~~l 306 (918)
.+|+.|+|++|+|...+.+
T Consensus 2 ~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CccCEEECCCCccceecCc
Confidence 4566667777766554433
No 195
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.50 E-value=3.8 Score=26.18 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=11.0
Q ss_pred CCCCEEEeeCCCCCCCcC
Q 002472 266 AELKILRLFGNPLEFLPE 283 (918)
Q Consensus 266 ~~L~~L~L~~N~l~~l~~ 283 (918)
++|+.|+|+.|+|+.+..
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666665443
No 196
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.44 E-value=6.7 Score=42.80 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=98.4
Q ss_pred cCCcchhHHHHHHhccCCCCchhh-hHHHh------CCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhc
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVA-MLLMK------CDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKD 451 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~-~~v~~------~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g 451 (918)
+.+.++.+..+..+..+..+.+.. +.+.. .....++++++.+++.-+...++..|..++...+....... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence 456666666666666666555555 33332 12567788888888888888899999988865543322211 56
Q ss_pred hHHHHHHHhcC----CChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccc-------cCCChhhHHHHHHHHHHh
Q 002472 452 VLKSLKLLCAH----KNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT-------VGPEPRVNKAAARALAIL 520 (918)
Q Consensus 452 ~~p~L~~Ll~~----~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll-------~~~~~~i~~~a~~al~~l 520 (918)
+++.+...+.+ .+...+.-|+++++++......+..+. +.+..+.+..++ ......+..+++-++=.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~-~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW-KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH-THHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH-hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 77888877765 344455778999999987777776666 688888999988 245678889999999889
Q ss_pred ccchHHHHHhh
Q 002472 521 GENESLRRAIR 531 (918)
Q Consensus 521 ~~~~~~~~~~~ 531 (918)
..++...+.+.
T Consensus 226 SF~~~~~~~~~ 236 (312)
T PF03224_consen 226 SFEPEIAEELN 236 (312)
T ss_dssp TTSHHHHHHHH
T ss_pred hcCHHHHHHHh
Confidence 99988877765
No 197
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.50 E-value=14 Score=45.85 Aligned_cols=105 Identities=25% Similarity=0.198 Sum_probs=81.4
Q ss_pred HhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcc
Q 002472 416 AVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLR 495 (918)
Q Consensus 416 ~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~ 495 (918)
.++++.++..+..++-+|..+.-++.......++ .+|+-....+.+..++|+-.|+.|+|-+++.-....+.--.+.+.
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 3467888888888999999999888655443333 477788888899999999999999999988776665555455666
Q ss_pred cchhccccCCC-hhhHHHHHHHHHHhc
Q 002472 496 DLLMRLTVGPE-PRVNKAAARALAILG 521 (918)
Q Consensus 496 ~~L~~ll~~~~-~~i~~~a~~al~~l~ 521 (918)
+.|...+++.. .++...|+.|+-+..
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 78888888755 589999998887664
No 198
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=68.33 E-value=14 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.263 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhCChHHHHHHhhhchHHHHHHH--hcCCChhHHHHHHHHHHHhhcCcccccceee
Q 002472 427 KSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLL--CAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (918)
Q Consensus 427 ~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~L--l~~~~~~v~~~al~a~~nl~~~~~~~~~~~~ 490 (918)
...++.++++++.+......+.+.|.+|.+... .+..+|-++.-|+.|+.|+..++...++++.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346788999999998888889999999988877 3567888999999999999999987766663
No 199
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=67.76 E-value=22 Score=41.90 Aligned_cols=133 Identities=22% Similarity=0.209 Sum_probs=92.3
Q ss_pred ccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhch
Q 002472 373 LISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDV 452 (918)
Q Consensus 373 L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~ 452 (918)
...+.-+.+.....-+.-++..+....++...+ ++..+..-+.++++..+..|++++.++. +.+ ++ .-+
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~----~~-~~l 115 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPE----MA-EPL 115 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHH----HH-HHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccc----hh-hHH
Confidence 333333666665555555566555544443111 2344444577888888888999999877 322 22 235
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 453 LKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 453 ~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
+|.+.+++.+.++.|++.|+.++..+.....+. +... +.+.+..++.+.++.+...|+.++..+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 789999999999999999999999987664442 2222 578899999999999999999999888
No 200
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=67.47 E-value=21 Score=39.76 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=114.5
Q ss_pred ccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCC--hHHHHHHHHHHHHHhhCChHHHHHHhhh
Q 002472 373 LISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFA--PEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (918)
Q Consensus 373 L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~v~~~ 450 (918)
+..+.++++.+++..+.+.+.++..+......+.+.+.-.-++..|.... .....+|+..+..++..... ..-+..
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~--~~~~~~ 107 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG--PKEIPR 107 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC--cccCCH
Confidence 33356677789999999999999988877788888886666666665433 34567899888877643211 123577
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHh
Q 002472 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAI 530 (918)
Q Consensus 451 g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~ 530 (918)
|++..++.+..+.+...+.-|+.++..++..+.. .+..+|++..|.+.+.....++.+..+.++-++-.++..|+-+
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 9999999999998888888888888888876644 5778888888888776655558888888888888887666543
No 201
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=24 Score=39.40 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCC--hHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCC
Q 002472 387 QACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFA--PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK 463 (918)
Q Consensus 387 ~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~ 463 (918)
+.+-.|+++.-.+-.+ ..+.+.+.++-+-+.|.... .+.+.+..-+++-++ .++..+..+..+|+++.|++|+...
T Consensus 524 EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a-~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 524 ECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA-RDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh-hhhHHHHHhCccccHHHHHHHHHhh
Confidence 3344566666544444 66666677766555565332 233444333333333 3444466778889999999999753
Q ss_pred --ChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 464 --NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 464 --~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
+-.....-+-..-.+.++..++.-++.+..+...+..|+....++++|-.-.|+..+++..
T Consensus 603 QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 603 QEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 3334344455566777887777667777778889999999999999999999999998765
No 202
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.95 E-value=7.6 Score=34.25 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCcccccceeeccCcccchhccc--cCCChhhHHHHHHHHHHhccch-HHHHHh
Q 002472 468 QRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT--VGPEPRVNKAAARALAILGENE-SLRRAI 530 (918)
Q Consensus 468 ~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~i~~~a~~al~~l~~~~-~~~~~~ 530 (918)
+...++.+||++......+..+.+.+.++.++... +...|-++++|.+|+.++-+.. +.++.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34457889999999987777777888888888754 4577899999999999996544 444433
No 203
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=63.93 E-value=26 Score=38.89 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=84.0
Q ss_pred hHHHhCCCchhHHHhhccCChHH--HHHHHHHHHHHhhCChHHHHHHhhh--chHHHHHHHhcCCChhHHHHHHHHHHHh
Q 002472 403 MLLMKCDIMQPIIAVLKSFAPEE--VKSVLQVVGQLAFASDTVAQKMLTK--DVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (918)
Q Consensus 403 ~~v~~~~~~~~ll~ll~~~~~~~--~~~~l~~L~~l~~~~~~~~~~v~~~--g~~p~L~~Ll~~~~~~v~~~al~a~~nl 478 (918)
+.+...|....+++++..++-+. ..++.+.|.++...- ....|... |++-.|.+ ..+-+..++..+..++++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~~~~Il~lAK--~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIGLGVILNLAK--EREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhccchhhhhhhh--hcCcHHHHHHHHHHHHHH
Confidence 55666678888999988877655 466888888876432 23344444 44444432 123345666677789999
Q ss_pred hcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 479 AFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
-.+++..-+-++.+++++.+..-..-.++.+-..++.|+.++.-.
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~ 294 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH 294 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh
Confidence 999988777777999999988888888899999999999988533
No 204
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=63.31 E-value=8 Score=43.71 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=76.6
Q ss_pred chhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceee
Q 002472 411 MQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (918)
Q Consensus 411 ~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~ 490 (918)
+..++..+...+..+...+..+|..+ -..++.+.|..++.+.++.++..++.+++..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r------------ 144 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH------------ 144 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh------------
Confidence 45556666666555555566666532 3356788999999999999988888777761
Q ss_pred ccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHhhcCCCCCCcceEEEecCCC
Q 002472 491 SESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPKQGLRILSMDGGG 549 (918)
Q Consensus 491 ~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~riL~LdGGG 549 (918)
.....+.+..++.+.++.++.++..++..++..................+|.-++.|++
T Consensus 145 ~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 145 RHDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234677888899999999999999998876654433322223334445544444443
No 205
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=61.48 E-value=6 Score=44.67 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=59.7
Q ss_pred chHHHHHHHhc-CCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 451 DVLKSLKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 451 g~~p~L~~Ll~-~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
.++..|.+++. +.++.+..-||.-+|.++......+.++..-|+...++.|+.+++++++++|-.|+.-+
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45788999984 55666666688889999999888888888899999999999999999999999998655
No 206
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.00 E-value=19 Score=38.19 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=79.6
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccC
Q 002472 414 IIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSES 493 (918)
Q Consensus 414 ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~ 493 (918)
++.++....+.++..+...|..+..+ .-.+..--+.-.|+.|.+|+....+ -.+|..++.|++....-+..++-+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~-- 82 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD-- 82 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH--
Confidence 44556777777777777777777644 2222122234568888888888777 457899999998877666555533
Q ss_pred cccchhccccCCChhhHHHHHHHHHHhccchHHHHH
Q 002472 494 LRDLLMRLTVGPEPRVNKAAARALAILGENESLRRA 529 (918)
Q Consensus 494 ~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~ 529 (918)
++..++..+........+..|..++++...+..-..
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 788888888888888999999999999887754443
No 207
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=60.68 E-value=49 Score=32.64 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccc
Q 002472 423 PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLT 502 (918)
Q Consensus 423 ~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll 502 (918)
+.++.+++-+++.++..-... + ...+|.+...+.+.++.|++.|+.++..+....-- -....+...++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHH
Confidence 345566788888887654332 2 23588999999999999999999999999764322 22333436667788
Q ss_pred cCCChhhHHHHHHHHHHhccc
Q 002472 503 VGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 503 ~~~~~~i~~~a~~al~~l~~~ 523 (918)
..++++++..|...+.-+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999888766543
No 208
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=9.5 Score=40.34 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcc----cccceeeccCcccchh
Q 002472 424 EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLE----NRRILVTSESLRDLLM 499 (918)
Q Consensus 424 ~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~----~~~~~~~~~~~~~~L~ 499 (918)
+.-.-+..||.++...-.. .-+-...||-|+.=+.+.+..|+.-|+..+|.+.-..+ ...+.|+++++.+.++
T Consensus 58 ekttlcVscLERLfkakeg---ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 58 EKTTLCVSCLERLFKAKEG---AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred chhhhHHHHHHHHHhhccc---hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 3333366777777632211 12334568999999999999999999999999876665 3455677999999999
Q ss_pred ccccCCChhhHHHHHHHHHHhccch
Q 002472 500 RLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 500 ~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
..+-..+.++.+.|...++.++--+
T Consensus 135 dcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 9999999999999999888876544
No 209
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=59.82 E-value=48 Score=36.36 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=105.2
Q ss_pred CcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhh---chHHHHH
Q 002472 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK---DVLKSLK 457 (918)
Q Consensus 381 N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~---g~~p~L~ 457 (918)
++++.-.....|..-..+...+..++.......+...+..+.-++...++.+++.+...+...+...+.. ..+....
T Consensus 136 ~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~ 215 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN 215 (335)
T ss_dssp STTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred CccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555554444677777777778888888888999999999999988776655544444 4566899
Q ss_pred HHhcCCChhHHHHHHHHHHHhhcCccccc---ceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 458 LLCAHKNPEVQRFALLAVGNLAFCLENRR---ILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 458 ~Ll~~~~~~v~~~al~a~~nl~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
.|+.+.+--.++.++.-+|.+.....+.. .-+-+..-+..++.++.+....++-+|-........|+
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999999999999999988887654 34446677788899999999999999988887776665
No 210
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.64 E-value=26 Score=41.61 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHhCCCchhHHHh----hccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 002472 405 LMKCDIMQPIIAV----LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAF 480 (918)
Q Consensus 405 v~~~~~~~~ll~l----l~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~ 480 (918)
+...+++++.+.+ +++++......+.-+.+.+..+-+.....-+..+++|.++.+.......++.-+.|++|.++-
T Consensus 356 ~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 356 CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 3444556655554 456777767777777777777776666666777899999999998888888888899999976
Q ss_pred Ccccccc-eeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 481 CLENRRI-LVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 481 ~~~~~~~-~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
+....+- .+.-...+.+++.=+ ..++++...+|||...+++.
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence 6542211 111112222222222 36678999999999888744
No 211
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=56.15 E-value=37 Score=41.08 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=76.2
Q ss_pred HHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCc
Q 002472 415 IAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (918)
Q Consensus 415 l~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~ 494 (918)
..-+.++++..+..+++.+.-+-- +.+.+ -+++.+.+++.+..+.|++.|.-|++.+-.-+... ..+.|.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~------~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~ 167 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRV------KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGL 167 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcCh------HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccH
Confidence 344678888888888888875541 12222 36889999999999999999999999987554442 446678
Q ss_pred ccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 495 RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 495 ~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
...+..++...++.+...|..++..+-..
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88888899999999999999988777433
No 212
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=54.82 E-value=24 Score=39.68 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCcceEEEec--C--CCchH--------------------HH-HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHH
Q 002472 537 KQGLRILSMD--G--GGMKG--------------------LA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (918)
Q Consensus 537 ~~~~riL~Ld--G--GG~rG--------------------~~-~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~ 591 (918)
..++||+++| | ||.-| +. .+..+.++.+.++.. .+-.++|.|.||.+|..++
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~lvG~S~Gg~ia~~~a 165 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGIT---RLAAVVGGSMGGMQALEWA 165 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCC---CceEEEEECHHHHHHHHHH
Confidence 4579999999 7 33211 11 233445555666532 2226999999999999998
Q ss_pred cC
Q 002472 592 VK 593 (918)
Q Consensus 592 ~~ 593 (918)
..
T Consensus 166 ~~ 167 (379)
T PRK00175 166 ID 167 (379)
T ss_pred Hh
Confidence 54
No 213
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.47 E-value=11 Score=23.28 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=16.0
Q ss_pred cCcccEEECcCCcchhHHHHHHhc
Q 002472 370 VRQLISMISSDNRHVVEQACSALS 393 (918)
Q Consensus 370 L~~L~~L~ls~N~~v~e~a~~~L~ 393 (918)
+++|+.|++++|. +..+++.+|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4689999999987 7777777664
No 214
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=54.12 E-value=39 Score=38.32 Aligned_cols=143 Identities=14% Similarity=0.047 Sum_probs=94.5
Q ss_pred cCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccC-ChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHH
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L 456 (918)
..+..+...++..|..+...+... ......-...-+...++.. ....+..+.+||..+.. .+.-+....+++.++.|
T Consensus 112 ~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L 190 (429)
T cd00256 112 RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTL 190 (429)
T ss_pred CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHH
Confidence 456677888888887776433322 1110000112233344443 24555668899998884 44556667788889999
Q ss_pred HHHhcCC--ChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccC-CChhhHHHHHHHHHHhccc
Q 002472 457 KLLCAHK--NPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG-PEPRVNKAAARALAILGEN 523 (918)
Q Consensus 457 ~~Ll~~~--~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~i~~~a~~al~~l~~~ 523 (918)
..++... ....+..++-++.-+++..+.. ......++++.+++++.. ..+.+.+-+..++.++...
T Consensus 191 ~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~-~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 191 VKLLSNATLGFQLQYQSIFCIWLLTFNPHAA-EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHhccHHHH-HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 9998763 4578888999999999988733 344467899999998865 6677777777777777643
No 215
>PF05536 Neurochondrin: Neurochondrin
Probab=53.22 E-value=29 Score=40.90 Aligned_cols=138 Identities=19% Similarity=0.107 Sum_probs=87.2
Q ss_pred cchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCCh-HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHh
Q 002472 382 RHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP-EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460 (918)
Q Consensus 382 ~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~-~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll 460 (918)
.....-++..|..++.+......-.-.+-++.++..+..... +.+..+++||..++ .++.-.+.+++.|+++.|.+.+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHH
Confidence 345666777888888755444112222346777888766665 88888999999999 7777888999999999999998
Q ss_pred cCCChhHHHHHHHHHHHhhcCcccccceeec---cCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 461 AHKNPEVQRFALLAVGNLAFCLENRRILVTS---ESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 461 ~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~---~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
.+ .+.....|+..+.++........-.-.. ..+...+.......+...+-+.+.-+..+-
T Consensus 150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L 212 (543)
T PF05536_consen 150 PN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL 212 (543)
T ss_pred Hh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 88 4455666888888876554321100000 122233444444444445555555555543
No 216
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=52.65 E-value=2 Score=47.76 Aligned_cols=80 Identities=30% Similarity=0.331 Sum_probs=52.7
Q ss_pred cCcceeecccccccccchhccCCCCCcEEEeecCCCCCCcccccCCCCCCEEEeeCCCCCCCcCcCCCCCCcEEEccCCC
Q 002472 220 KNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIR 299 (918)
Q Consensus 220 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~~~l~~l~~L~~L~L~~N~l~~l~~l~~l~~L~~L~L~~N~ 299 (918)
..-+.+.+|++.+...|..+..|+.|+.+.+..|+++..++.++++.++..+.+. +.+..+..+..+-++.+..|.
T Consensus 104 ~~~t~~s~s~~~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i~r~~----s~~d~l~~~~pf~e~s~~~~~ 179 (763)
T KOG4231|consen 104 KTVTSLSLSGCGLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKILRVD----SVPDELRQCVPFVELSLEHNK 179 (763)
T ss_pred eeeeecccccceeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHHhccC----CccccccccCCchhhhhhccC
Confidence 3456667788888778888888888888888888887777667776666555443 122244445555555555565
Q ss_pred CCCC
Q 002472 300 IVAD 303 (918)
Q Consensus 300 i~~~ 303 (918)
...+
T Consensus 180 ~~~p 183 (763)
T KOG4231|consen 180 LVRP 183 (763)
T ss_pred ccCC
Confidence 5443
No 217
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=51.68 E-value=18 Score=29.81 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhcCcccccceeeccCcccchhccccC-CChhhHHHHHHHHHHhccchHHHHHh
Q 002472 467 VQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVG-PEPRVNKAAARALAILGENESLRRAI 530 (918)
Q Consensus 467 v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~i~~~a~~al~~l~~~~~~~~~~ 530 (918)
..+.|+||+|++.... .-.+.+.+.++.+.++++... +...+|--+-.++..++.+++-.+.+
T Consensus 3 ~lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L 66 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL 66 (73)
T ss_pred HHHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 3577999999997744 334445477899999998875 66789999999999999887655443
No 218
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=50.94 E-value=13 Score=41.36 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred chhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCCh-------------------------HHHHHHHHHHHHHh
Q 002472 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP-------------------------EEVKSVLQVVGQLA 437 (918)
Q Consensus 383 ~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~-------------------------~~~~~~l~~L~~l~ 437 (918)
..++.+.|++++|. ..++.-+...+. .+..+++++|+++.
T Consensus 448 n~r~KaawtlgnIT---------------dAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 448 NVRAKAAWSLGNIT---------------DALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred hHHHHHHHHhhhhH---------------HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Q ss_pred hCChHHHH----HHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCccc-ccceeeccCcccchhccccC-CChhhHH
Q 002472 438 FASDTVAQ----KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN-RRILVTSESLRDLLMRLTVG-PEPRVNK 511 (918)
Q Consensus 438 ~~~~~~~~----~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~-~~~~~~~~~~~~~L~~ll~~-~~~~i~~ 511 (918)
-.-+.... ++++.....-+-.........|+=+|+.++||+.....- -+..--...+.+.|..|+.+ .++.++-
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Q ss_pred HHHHHHHHhccch
Q 002472 512 AAARALAILGENE 524 (918)
Q Consensus 512 ~a~~al~~l~~~~ 524 (918)
.|+.+++..+..+
T Consensus 593 ~AA~aL~vp~~re 605 (728)
T KOG4535|consen 593 RAAAALSVPGKRE 605 (728)
T ss_pred hhhhhhcCCCCcc
No 219
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.54 E-value=8 Score=44.18 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=7.8
Q ss_pred CCCCcEEEeecCCCCC
Q 002472 242 CVGLVELSLEHNRLVR 257 (918)
Q Consensus 242 l~~L~~L~L~~N~l~~ 257 (918)
.+.+..++|++|++..
T Consensus 217 ~p~i~sl~lsnNrL~~ 232 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH 232 (585)
T ss_pred Ccceeeeecccchhhc
Confidence 3444555555555443
No 220
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=32 Score=38.19 Aligned_cols=126 Identities=18% Similarity=0.178 Sum_probs=83.9
Q ss_pred hhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhC-----ChH----HHHHHhhhchHHHHHHHhcCCChhHHH
Q 002472 400 SVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFA-----SDT----VAQKMLTKDVLKSLKLLCAHKNPEVQR 469 (918)
Q Consensus 400 ~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~-----~~~----~~~~v~~~g~~p~L~~Ll~~~~~~v~~ 469 (918)
|.+ ..+++.+.++.++.+|.+.+..+....+..|.++.-. +++ -+..+++.++++-|+.-+..-+.+++.
T Consensus 115 PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke 194 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE 194 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh
Confidence 355 7889999999999999998887776677777776521 111 145667779999988887655554444
Q ss_pred H------HHHHHHHhhcCcccccceeeccCcccchhc-cccC-CChhhHHHHHHHHHHhccchH
Q 002472 470 F------ALLAVGNLAFCLENRRILVTSESLRDLLMR-LTVG-PEPRVNKAAARALAILGENES 525 (918)
Q Consensus 470 ~------al~a~~nl~~~~~~~~~~~~~~~~~~~L~~-ll~~-~~~~i~~~a~~al~~l~~~~~ 525 (918)
+ ++..+-|++--...-.+.+.+.+.+.+|+. +... +...-+.++...++.+.++..
T Consensus 195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 3 444566776555444444445688888776 3333 344556778888888887765
No 221
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=49.98 E-value=35 Score=37.32 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 002472 554 ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (918)
Q Consensus 554 ~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~ 608 (918)
+++++.+.|.+ .+..+|+++|.|.|-+.|+..+ +-++.++..++-...+
T Consensus 70 ~~~al~~~l~~-----~Gi~P~~v~GhSlGE~aA~~aa-G~ls~e~a~~lv~~R~ 118 (318)
T PF00698_consen 70 IQVALARLLRS-----WGIKPDAVIGHSLGEYAALVAA-GALSLEDALRLVYERA 118 (318)
T ss_dssp HHHHHHHHHHH-----TTHCESEEEESTTHHHHHHHHT-TSSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-----cccccceeeccchhhHHHHHHC-CccchhhhhhhHHHHH
Confidence 34555555644 4466899999999999888664 6689999888765433
No 222
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=49.87 E-value=16 Score=41.39 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=95.1
Q ss_pred HHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHH
Q 002472 390 SALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQ 468 (918)
Q Consensus 390 ~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~ 468 (918)
..|..++.....+ .-+.+..+++++++.|..++.-+...+.-.+.+++.--..-..-+++.|.+-.|+.++.+++-+.|
T Consensus 411 l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLq 490 (743)
T COG5369 411 LFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQ 490 (743)
T ss_pred HHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhh
Confidence 3455555444444 556777888888888877544333334555555543333344567889999999999999999999
Q ss_pred HHHHHHHHHhhcCccccccee-eccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 469 RFALLAVGNLAFCLENRRILV-TSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 469 ~~al~a~~nl~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
.+..|.+..+..+.++..++- +..-....++.+.+.+...+++..-..+.+...+.
T Consensus 491 ans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 491 ANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred hcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 999999999999887654422 13334466777888888889998888888887654
No 223
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=49.72 E-value=6.1 Score=46.67 Aligned_cols=143 Identities=21% Similarity=0.234 Sum_probs=79.3
Q ss_pred cCcccEEECcCCcchhHHHHHHhccC-CCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHh
Q 002472 370 VRQLISMISSDNRHVVEQACSALSSL-AGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKML 448 (918)
Q Consensus 370 L~~L~~L~ls~N~~v~e~a~~~L~~L-~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~ 448 (918)
++.|..+.-..++.+...|+.++..+ ..+.... -.-......+.+++...++..+...++.+..++.........
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~-- 229 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK-- 229 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--
Confidence 55566665666778888888888888 2111100 011111222233335566666666677766666444333211
Q ss_pred hhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 449 ~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
..+++.+..++.+.++.|..+|.+++..+..... .-..+.+.|..++.+.++.++..+..++..+...
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~ 297 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS 297 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence 3456666666666666666666666554433322 1234446666677777776777777666666544
No 224
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.18 E-value=7.2 Score=44.54 Aligned_cols=63 Identities=33% Similarity=0.395 Sum_probs=43.0
Q ss_pred CCCCCcEEeccCCCCCCCc--ccc-cCCcCcceeecccc--cccccchhcc--CCCCCcEEEeecCCCCCC
Q 002472 195 RLPVLEKLYLDNNKLSTLP--PEL-GAMKNLKVLIVDNN--MLVCVPVELR--ECVGLVELSLEHNRLVRP 258 (918)
Q Consensus 195 ~l~~L~~L~L~~n~l~~lp--~~l-~~l~~L~~L~Ls~N--~l~~lp~~l~--~l~~L~~L~L~~N~l~~~ 258 (918)
+.+.+..++|++|++..+. ..+ ...++|.+|+|++| .+...+ ++. +...|++|.|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 5677888889999887553 122 45688999999998 444222 222 345688999999988543
No 225
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=48.61 E-value=43 Score=36.09 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 002472 555 TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (918)
Q Consensus 555 ~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~ 608 (918)
+++..+.|.+ .| ..+|.++|.|.|-+.|+.++ +-++.++..++-...+
T Consensus 69 ~~a~~~~l~~-~G----i~p~~~~GhSlGE~aA~~~a-g~~~~~~~l~l~~~r~ 116 (298)
T smart00827 69 QVALARLWRS-WG----VRPDAVVGHSLGEIAAAYVA-GVLSLEDAARLVAARG 116 (298)
T ss_pred HHHHHHHHHH-cC----CcccEEEecCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 4445555544 34 45799999999999998876 5589999887755433
No 226
>PTZ00429 beta-adaptin; Provisional
Probab=48.56 E-value=39 Score=41.38 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred HHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCc
Q 002472 415 IAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (918)
Q Consensus 415 l~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~ 494 (918)
.+-+..+++.++..+++++..+.. . .+++ -+++.+.+.+.+.++-|++.|+.++..+-.... +.+.+.++
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~--~----~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV--S----SVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc--H----HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccch
Confidence 334566777777778888886652 1 1222 246778888999999999999999998865443 34456678
Q ss_pred ccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 495 RDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 495 ~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
.+.|..++...++.+...|..++..+.+.
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 88999999999999999999988777543
No 227
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=47.01 E-value=10 Score=44.45 Aligned_cols=139 Identities=20% Similarity=0.200 Sum_probs=86.8
Q ss_pred cCCcchhHHHHHHhccCCCCchhh---hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhh--hchH
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVA---MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT--KDVL 453 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~---~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~--~g~~ 453 (918)
+..+.+++++...++.|+.....+ ..+-.+|++ |...|....+++....+.+++.+.-.-+.. .++. .|++
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~--km~pPi~dll 885 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT--KMTPPIKDLL 885 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc--ccCCChhhhc
Confidence 345678888887777777544444 233344443 234577888898888888888776222111 1221 3889
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 454 KSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 454 p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
|+|...|++....|+.++..-+|.|+.-...-..+.-=-.+-=-|+.+|.+.+.+++..|..+..+|+
T Consensus 886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999997655442211100011112445566666677777776666654
No 228
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.88 E-value=29 Score=41.36 Aligned_cols=144 Identities=22% Similarity=0.212 Sum_probs=105.6
Q ss_pred hHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhc--cCChHHHHHHHHHHHHHhhCCh------HH----------H-H
Q 002472 385 VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLK--SFAPEEVKSVLQVVGQLAFASD------TV----------A-Q 445 (918)
Q Consensus 385 ~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~--~~~~~~~~~~l~~L~~l~~~~~------~~----------~-~ 445 (918)
+..|+.+|..++. .-+..+-+.++.+++..|. ..+++.+.-++..+..+..+.| .. + +
T Consensus 40 RR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~ 116 (970)
T KOG0946|consen 40 RRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQ 116 (970)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHH
Confidence 4578888877762 1144445555788999986 4457888889999998886664 11 1 1
Q ss_pred HHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccc--eeeccCcccchhccccCCChhhHHHHHHHHHHh-cc
Q 002472 446 KMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRI--LVTSESLRDLLMRLTVGPEPRVNKAAARALAIL-GE 522 (918)
Q Consensus 446 ~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~--~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l-~~ 522 (918)
.+-..+-+.-|...+.+.+..|+..|..-+.++..+.....+ +++..-++..+|.++....+.||-++..-+.-+ ..
T Consensus 117 fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 117 FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence 344558899999999999999999999999999766654444 555777889999999999999999888777655 45
Q ss_pred chHHHHHhh
Q 002472 523 NESLRRAIR 531 (918)
Q Consensus 523 ~~~~~~~~~ 531 (918)
++.+++.+-
T Consensus 197 n~~IQKlVA 205 (970)
T KOG0946|consen 197 NSSIQKLVA 205 (970)
T ss_pred CchHHHHHH
Confidence 566666543
No 229
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.32 E-value=4.3 Score=40.27 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=48.2
Q ss_pred ccEEEeecCCCCCcCcccccCCCCCCEEeCCCCCCCCCCccccc-cCCCCccEEEccCCC-CcccC-cccCCCCCCcEEe
Q 002472 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFC-DHWKTVTAVSLCGLG-LSALP-VDLTRLPVLEKLY 203 (918)
Q Consensus 127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~lp-~~l~~l~~L~~L~ 203 (918)
++.+|-++..|...--+.+.+++.++.|.+.+|.-+.+.--+.+ .-.++|+.|+|++|. ||+-. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 56677777766654445566677777777777652222111111 235788888888774 66221 2356777888877
Q ss_pred ccC
Q 002472 204 LDN 206 (918)
Q Consensus 204 L~~ 206 (918)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 754
No 230
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=46.26 E-value=47 Score=36.79 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCcceEEEec--C--CCchHH----------------H----HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHc
Q 002472 537 KQGLRILSMD--G--GGMKGL----------------A----TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (918)
Q Consensus 537 ~~~~riL~Ld--G--GG~rG~----------------~----~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~ 592 (918)
.++++|+++| | +|.-+- + .+..+.++.+.++.+ .+=.++|.|.||++|..++.
T Consensus 70 ~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~G~S~Gg~ia~~~a~ 146 (351)
T TIGR01392 70 TDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIE---QIAAVVGGSMGGMQALEWAI 146 (351)
T ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCC---CceEEEEECHHHHHHHHHHH
Confidence 5678999998 4 443221 1 233444555555532 11258999999999999975
Q ss_pred C
Q 002472 593 K 593 (918)
Q Consensus 593 ~ 593 (918)
.
T Consensus 147 ~ 147 (351)
T TIGR01392 147 D 147 (351)
T ss_pred H
Confidence 4
No 231
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=42.93 E-value=58 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.5
Q ss_pred cccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 002472 572 ELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (918)
Q Consensus 572 ~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~ 608 (918)
..+|.++|+|.|-+.|+..+ +-++.++..++-...+
T Consensus 82 i~p~~v~GhS~GE~aAa~~a-G~ls~eda~~lv~~r~ 117 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAA-GALDFETALKLVKKRG 117 (290)
T ss_pred CCCCEEeecCHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45799999999998888876 6689999888765443
No 232
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.56 E-value=17 Score=40.03 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=59.8
Q ss_pred chHHHHHHHhcCCC-hhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 451 DVLKSLKLLCAHKN-PEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 451 g~~p~L~~Ll~~~~-~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
.++..|..++...+ +.+.-.|+.-+|..+..-..-+.++..-|+.+.+++|+++.+++++.+|-.|+--+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 56778888887654 76666688889999999988888999999999999999999999999999887544
No 233
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=42.47 E-value=1.5e+02 Score=28.53 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHhCCCchhHHHhhccCC------hHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCC--ChhHHHHHHHHH
Q 002472 404 LLMKCDIMQPIIAVLKSFA------PEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK--NPEVQRFALLAV 475 (918)
Q Consensus 404 ~v~~~~~~~~ll~ll~~~~------~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~--~~~v~~~al~a~ 475 (918)
.-+..+++..++.++..+. .+...-++++..++.-+. ......++.-.+.+.+..+-.. ++.+...|+.-+
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3445566677777765544 244455788888877543 3344667777778888877543 578888888889
Q ss_pred HHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 476 GNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 476 ~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
-+++..+...-+.|..+=-.+-|...+...+++++..+..-+..+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998887667666666667788888889999988877655444
No 234
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.05 E-value=15 Score=32.16 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 468 QRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 468 ~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
++.++.+++.++.+-......- -..+++.++..+.+.+.++|..||.++-++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 4556777777766665553333 346778888999999999999999999888633
No 235
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=41.72 E-value=20 Score=40.67 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCC
Q 002472 427 KSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPE 506 (918)
Q Consensus 427 ~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~ 506 (918)
..++-+|+.+...-..-+--+.+..+...|.+++...+..+.-++..++.|.+..-.+-+...++.+++..|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 33455666555222122234567788899999999988888888888999998888888888889999999999999999
Q ss_pred hhhHHHHHHHHHHhccchH
Q 002472 507 PRVNKAAARALAILGENES 525 (918)
Q Consensus 507 ~~i~~~a~~al~~l~~~~~ 525 (918)
...++...|.+.++.++-+
T Consensus 487 daLqans~wvlrHlmyncq 505 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred hhhhhcchhhhhhhhhcCc
Confidence 9999999999999977753
No 236
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=41.59 E-value=13 Score=42.80 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=81.9
Q ss_pred cCCcchhHHHHHHhccCCCCchhh---hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHH
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVA---MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~---~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~ 455 (918)
+.-+.+++.+....+.|+.-...+ ..+..+|.+ |..-+....+++....+.+++.+.-..+-....-=-.|++|+
T Consensus 615 ~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ 692 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPS 692 (975)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccc
Confidence 344566676666665555333333 233334432 233466777788877777777665322111100111489999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhc
Q 002472 456 LKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 456 L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
|...|+++...|+.+...-+|.|+....+-..+.-=-.+-=-|+.+|.+...++++.|..+..+|.
T Consensus 693 ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 693 LTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 999999999999999999999888766552221100011112444566666677777766665554
No 237
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.58 E-value=20 Score=23.24 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=6.8
Q ss_pred CCcEEeccCCCCC
Q 002472 198 VLEKLYLDNNKLS 210 (918)
Q Consensus 198 ~L~~L~L~~n~l~ 210 (918)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 238
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.36 E-value=64 Score=31.11 Aligned_cols=97 Identities=21% Similarity=0.187 Sum_probs=64.0
Q ss_pred ccCChHHHHHHHHHHHHHhhCChHHHH-HHhhhchHHHHHHHhc--CCChhHHHHHHHHHHHhhcCcccccceeeccCcc
Q 002472 419 KSFAPEEVKSVLQVVGQLAFASDTVAQ-KMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLR 495 (918)
Q Consensus 419 ~~~~~~~~~~~l~~L~~l~~~~~~~~~-~v~~~g~~p~L~~Ll~--~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~ 495 (918)
.....+....++.++..+.-....... .....|.++.+..+.. ..+..++..++.++. .+...++.+..+ .....
T Consensus 53 ~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I-~~~~~ 130 (157)
T PF11701_consen 53 DEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFI-SKNYV 130 (157)
T ss_dssp CCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCC-HHHCH
T ss_pred ccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHH-HHHHH
Confidence 333334556677777777766655544 4457799999999999 778888887777665 455566666666 55667
Q ss_pred cchhccccC-CChh-hHHHHHHHH
Q 002472 496 DLLMRLTVG-PEPR-VNKAAARAL 517 (918)
Q Consensus 496 ~~L~~ll~~-~~~~-i~~~a~~al 517 (918)
+.|.++... .+.. ++..|.-+|
T Consensus 131 ~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 131 SWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHH
Confidence 999998854 4444 566655544
No 239
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=41.27 E-value=37 Score=34.93 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=65.9
Q ss_pred ccCChHHHHHHHHHHHHHhhCC--hHHHHHHhhh--chHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCc
Q 002472 419 KSFAPEEVKSVLQVVGQLAFAS--DTVAQKMLTK--DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESL 494 (918)
Q Consensus 419 ~~~~~~~~~~~l~~L~~l~~~~--~~~~~~v~~~--g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~ 494 (918)
...+++.+..++..|..++.++ ......+++. .++..+...+.+.+..+.+.|+.+++.++......-... -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4566777788999999888765 2222222221 455667777777788899999999999987777664434 3467
Q ss_pred ccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 495 RDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 495 ~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
++.|+..+.+...-+++.+..++..+.++-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 788888888888889999999998876553
No 240
>PRK13604 luxD acyl transferase; Provisional
Probab=41.26 E-value=48 Score=35.82 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=31.9
Q ss_pred CCcceEEEec--CC-C-chH----------HH-HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHH
Q 002472 537 KQGLRILSMD--GG-G-MKG----------LA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALA 591 (918)
Q Consensus 537 ~~~~riL~Ld--GG-G-~rG----------~~-~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~ 591 (918)
..|+.+|.+| || | .-| .. ...+++.+.+....+ =.+.|.|.||.+|.+.|
T Consensus 62 ~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~-----I~LiG~SmGgava~~~A 126 (307)
T PRK13604 62 SNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINN-----LGLIAASLSARIAYEVI 126 (307)
T ss_pred HCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCc-----eEEEEECHHHHHHHHHh
Confidence 4689999999 43 4 233 22 234566665531111 35899999999987765
No 241
>PTZ00429 beta-adaptin; Provisional
Probab=40.22 E-value=71 Score=39.20 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=91.3
Q ss_pred CcccEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhh
Q 002472 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (918)
Q Consensus 371 ~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~ 450 (918)
..|+.=.-+.|+.++.-|++.+++|... .. -.-+..++.+.+...++-+.+.|+-|+..+...+. ..+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~--~i----~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~ 178 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVS--SV----LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQ 178 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcH--HH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---cccccc
Confidence 3344322357889999999999998732 11 11123444556777788888888888888764433 234567
Q ss_pred chHHHHHHHhcCCChhHHHHHHHHHHHhhcCccc-----------------------cccee---e---------ccCcc
Q 002472 451 DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLEN-----------------------RRILV---T---------SESLR 495 (918)
Q Consensus 451 g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~-----------------------~~~~~---~---------~~~~~ 495 (918)
|.++.|.+|+.+.++.|+.+|+.++-.+...... |..++ . ...++
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il 258 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLL 258 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 8889999999999999999998887777432210 00000 0 01234
Q ss_pred cchhccccCCChhhHHHHHHHHHHhcc
Q 002472 496 DLLMRLTVGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 496 ~~L~~ll~~~~~~i~~~a~~al~~l~~ 522 (918)
..+...+.+..+.+.-+++.++-.+..
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 444445667778888888888776654
No 242
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=40.01 E-value=29 Score=36.15 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.9
Q ss_pred ceeeecChHHHHHHHHHcC
Q 002472 575 DLVCGTSTGGMLAIALAVK 593 (918)
Q Consensus 575 D~i~GTS~Gaiia~~l~~~ 593 (918)
-.|+|.|.||..|+.++..
T Consensus 117 ~~i~G~S~GG~~Al~~~l~ 135 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLALR 135 (251)
T ss_dssp EEEEEETHHHHHHHHHHHH
T ss_pred eEEeccCCCcHHHHHHHHh
Confidence 5899999999999999854
No 243
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=38.37 E-value=76 Score=34.13 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHH
Q 002472 553 LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKN 606 (918)
Q Consensus 553 ~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~ 606 (918)
++++...+.+.+ .| ..++.++|.|.|-+.|+..+ +-++.++..++-..
T Consensus 61 ~~q~al~~~l~~-~g----~~P~~v~GhS~GE~aAa~~a-G~~s~e~a~~lv~~ 108 (295)
T TIGR03131 61 AAGVAAWRALLA-LL----PRPSAVAGYSVGEYAAAVVA-GVLTFDDALRLVAL 108 (295)
T ss_pred HHHHHHHHHHHh-cC----CCCcEEeecCHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 345555555655 23 35799999999999888876 55899998776443
No 244
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=38.34 E-value=75 Score=35.05 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=32.7
Q ss_pred CcceEEEec--CCCc--h---HH-HHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC
Q 002472 538 QGLRILSMD--GGGM--K---GL-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (918)
Q Consensus 538 ~~~riL~Ld--GGG~--r---G~-~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~ 593 (918)
+++||+++| |.|- . .+ -.+..+.++.+.++.+ ..-.++|.|.||.+|..++..
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l~l~---~~~~lvG~SmGG~vA~~~A~~ 158 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLDVPIDTADQADAIALLLDALGIA---RLHAFVGYSYGALVGLQFASR 158 (343)
T ss_pred cccEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---cceEEEEECHHHHHHHHHHHH
Confidence 468888877 4331 1 11 1344555566655532 122489999999999999864
No 245
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.18 E-value=1.3e+02 Score=36.03 Aligned_cols=97 Identities=21% Similarity=0.187 Sum_probs=69.0
Q ss_pred cCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHH
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~ 458 (918)
..|+.++..|++.++.+.-+ -+......++...++...+.+...+.-++..+..-+ .+.+.+.|.++.|..
T Consensus 97 d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKD 167 (734)
T ss_pred CCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHH
Confidence 35667777777777666522 112233567777777777777666666666555322 456888999999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhcCccc
Q 002472 459 LCAHKNPEVQRFALLAVGNLAFCLEN 484 (918)
Q Consensus 459 Ll~~~~~~v~~~al~a~~nl~~~~~~ 484 (918)
++.+.++.|..+|+.++..|.-.+.+
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998766654
No 246
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=37.72 E-value=43 Score=33.41 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=15.8
Q ss_pred ceeeecChHHHHHHHHH
Q 002472 575 DLVCGTSTGGMLAIALA 591 (918)
Q Consensus 575 D~i~GTS~Gaiia~~l~ 591 (918)
.+++|+|.||..|..++
T Consensus 61 ~~liGSSlGG~~A~~La 77 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLA 77 (187)
T ss_pred eEEEEEChHHHHHHHHH
Confidence 68999999999999986
No 247
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.59 E-value=27 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.8
Q ss_pred cCcccEEECcCCcchhHHHHHHhcc
Q 002472 370 VRQLISMISSDNRHVVEQACSALSS 394 (918)
Q Consensus 370 L~~L~~L~ls~N~~v~e~a~~~L~~ 394 (918)
.++|+.|++++.+.+.+.++..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 3689999999999999988877653
No 248
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=37.13 E-value=44 Score=38.45 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=59.7
Q ss_pred cCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCC-----ChhHHHHHHHHHHHhhcCc-ccccceeeccC
Q 002472 420 SFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHK-----NPEVQRFALLAVGNLAFCL-ENRRILVTSES 493 (918)
Q Consensus 420 ~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~-----~~~v~~~al~a~~nl~~~~-~~~~~~~~~~~ 493 (918)
..+..+...|++||.+.++.+....+...+.|..+.+.+.+... ...+.--..|-+.=++... +.+.+.+.+.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 44567778899999999999988888889999999999999876 5566555666666554433 44555555556
Q ss_pred cccchhcc
Q 002472 494 LRDLLMRL 501 (918)
Q Consensus 494 ~~~~L~~l 501 (918)
+...+...
T Consensus 123 ~~~~l~~~ 130 (446)
T PF10165_consen 123 GVELLTEA 130 (446)
T ss_pred hHHHHHHH
Confidence 66665553
No 249
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=34.24 E-value=1.2e+02 Score=36.81 Aligned_cols=94 Identities=21% Similarity=0.153 Sum_probs=72.5
Q ss_pred cCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHH
Q 002472 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (918)
Q Consensus 379 s~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~ 458 (918)
..|+.++..|++.++.+... -+...+..++.+++..+.+.+.+.|.-|+..+.--+ ...+-+.|.+--+..
T Consensus 103 d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~ 173 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKE 173 (757)
T ss_pred CCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHH
Confidence 47889999999999888721 222244567777788888888888888888877433 235677889999999
Q ss_pred HhcCCChhHHHHHHHHHHHhhcC
Q 002472 459 LCAHKNPEVQRFALLAVGNLAFC 481 (918)
Q Consensus 459 Ll~~~~~~v~~~al~a~~nl~~~ 481 (918)
|+.+.++.+..+|+.++..+.-.
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999888876543
No 250
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=34.12 E-value=1.1e+02 Score=25.21 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=38.4
Q ss_pred hHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhc-cCChHHHHHHHHHHHHHh
Q 002472 385 VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLK-SFAPEEVKSVLQVVGQLA 437 (918)
Q Consensus 385 ~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~-~~~~~~~~~~l~~L~~l~ 437 (918)
...++|+++++.....-...+.+.++++.++++.. .+....+.-+|-+|.-+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 35789999999865444477777899999888865 444455566788887555
No 251
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.01 E-value=28 Score=47.89 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=31.0
Q ss_pred EeeCCCCCCCc--CcCCCCCCcEEEccCCCCCCCcCcchhhhhh
Q 002472 272 RLFGNPLEFLP--EILPLLKLRHLSLANIRIVADENLRSVNVQI 313 (918)
Q Consensus 272 ~L~~N~l~~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~~~ 313 (918)
||++|+|+.++ .|..+++|+.|+|++|++.+.+.+..+..++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHH
Confidence 46778888666 3667788888888888888888777655443
No 252
>PF05536 Neurochondrin: Neurochondrin
Probab=33.93 E-value=1.7e+02 Score=34.55 Aligned_cols=116 Identities=19% Similarity=0.132 Sum_probs=80.5
Q ss_pred hHHHhhccCChHHHHHHHHHHHHHhhCChHHH---HHHhhhchHHHHHHHhcCCC-------hhHHHHHHHHHHHhhcCc
Q 002472 413 PIIAVLKSFAPEEVKSVLQVVGQLAFASDTVA---QKMLTKDVLKSLKLLCAHKN-------PEVQRFALLAVGNLAFCL 482 (918)
Q Consensus 413 ~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~---~~v~~~g~~p~L~~Ll~~~~-------~~v~~~al~a~~nl~~~~ 482 (918)
.-+.+|+..+.+.+.-|+-.++.++-.++... +.|+++=-.+-|.+|+.... ...+.-|+..++.++...
T Consensus 9 ~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 9 KCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 34556777777777778999999998776432 36888855799999998732 234444555666666644
Q ss_pred ccc--cceeeccCcccchhccccCCCh-hhHHHHHHHHHHhccchHHHHHhh
Q 002472 483 ENR--RILVTSESLRDLLMRLTVGPEP-RVNKAAARALAILGENESLRRAIR 531 (918)
Q Consensus 483 ~~~--~~~~~~~~~~~~L~~ll~~~~~-~i~~~a~~al~~l~~~~~~~~~~~ 531 (918)
+-. .+++ +-+|.|+.++..... .+..++..+|..+...+.-++.+.
T Consensus 89 ~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl 137 (543)
T PF05536_consen 89 ELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALL 137 (543)
T ss_pred hhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHH
Confidence 332 2222 456888888877666 999999999999998776665543
No 253
>PLN02965 Probable pheophorbidase
Probab=33.92 E-value=82 Score=32.86 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=31.3
Q ss_pred CcceEEEec--CCC----chH-HHH----HHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC
Q 002472 538 QGLRILSMD--GGG----MKG-LAT----VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (918)
Q Consensus 538 ~~~riL~Ld--GGG----~rG-~~~----~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~ 593 (918)
.+++|+++| |-| ..+ .+. +.-+.++.+.++. ...+ +++|.|.||.+|..++..
T Consensus 29 ~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~--~~~~-~lvGhSmGG~ia~~~a~~ 92 (255)
T PLN02965 29 AGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPP--DHKV-ILVGHSIGGGSVTEALCK 92 (255)
T ss_pred CCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCC--CCCE-EEEecCcchHHHHHHHHh
Confidence 468889988 322 111 222 2224444444442 1122 689999999999999864
No 254
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=32.94 E-value=1.4e+02 Score=29.48 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=63.2
Q ss_pred CcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHh
Q 002472 381 NRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC 460 (918)
Q Consensus 381 N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll 460 (918)
|+.++..++-+++.++-.-+.. + ...++.+...|..+++.++..++-+|.+|+..+ . ..++...+..+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~---ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-M---IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-c---eeehhhhhHHHHHHH
Confidence 3456667777777776433322 1 122445556688888899999999999998543 1 123333347888889
Q ss_pred cCCChhHHHHHHHHHHHhhcC
Q 002472 461 AHKNPEVQRFALLAVGNLAFC 481 (918)
Q Consensus 461 ~~~~~~v~~~al~a~~nl~~~ 481 (918)
...++.|+..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999988888888777665
No 255
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.20 E-value=24 Score=37.51 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=57.6
Q ss_pred chHHHHHHHhcCCChh-HHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHh
Q 002472 451 DVLKSLKLLCAHKNPE-VQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (918)
Q Consensus 451 g~~p~L~~Ll~~~~~~-v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l 520 (918)
.++..|.+++...++. ..-.|+.-++..+......+.++...|+.+.++.|+++++++++-+|..|+..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 4577888888887765 223377888888888888888888899999999999999999999999988554
No 256
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.94 E-value=2e+02 Score=30.94 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=70.2
Q ss_pred hhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCc--ccccce------
Q 002472 417 VLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCL--ENRRIL------ 488 (918)
Q Consensus 417 ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~--~~~~~~------ 488 (918)
-+.+.++.++..|+.||+-++.-+...+. ..++-+...+...+..++..|++++..+..-. +.-...
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 46778888888899999988876643322 22455555566678889999999999875432 211111
Q ss_pred eeccCcccchhccccCCChhhHHHHHHHHHHhccc
Q 002472 489 VTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (918)
Q Consensus 489 ~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~ 523 (918)
.....+...+.+.+.+.+++++..++.+++-+--+
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 12346777888888888989999888888766433
No 257
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=31.51 E-value=48 Score=36.35 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=31.5
Q ss_pred cceEEEec--CCC-----chHH-HHHH----HHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC
Q 002472 539 GLRILSMD--GGG-----MKGL-ATVQ----ILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (918)
Q Consensus 539 ~~riL~Ld--GGG-----~rG~-~~~~----vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~ 593 (918)
+++++++| |+| -+|. |++. .+++++++.+.. . =.+.|.|.||++|..+|..
T Consensus 86 ~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~---~-~~lvghS~Gg~va~~~Aa~ 148 (326)
T KOG1454|consen 86 GLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVE---P-VSLVGHSLGGIVALKAAAY 148 (326)
T ss_pred ceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCc---c-eEEEEeCcHHHHHHHHHHh
Confidence 68999988 444 2232 4443 444444433321 1 2389999999999999854
No 258
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=31.08 E-value=1.1e+02 Score=32.72 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=31.0
Q ss_pred CcceEEEecCCC-chHHH-------------HHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHc
Q 002472 538 QGLRILSMDGGG-MKGLA-------------TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (918)
Q Consensus 538 ~~~riL~LdGGG-~rG~~-------------~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~ 592 (918)
.+++|+++|=+| ...-+ -..+++.|.+..+.... .+ .++|.|.||.+|..+|.
T Consensus 65 ~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~-~i-~lIGhSlGa~vAg~~a~ 131 (275)
T cd00707 65 GDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLE-NV-HLIGHSLGAHVAGFAGK 131 (275)
T ss_pred CCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChH-HE-EEEEecHHHHHHHHHHH
Confidence 358888888322 11111 12345555554342221 11 37899999999999874
No 259
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=30.65 E-value=93 Score=33.84 Aligned_cols=60 Identities=25% Similarity=0.090 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHhhcCcccc-cceeeccCcccchhccccCCChhhHHHHHHHHHHhccch
Q 002472 464 NPEVQRFALLAVGNLAFCLENR-RILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (918)
Q Consensus 464 ~~~v~~~al~a~~nl~~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~ 524 (918)
++.+...|+.+.+-+.+.-+.. .. -.-...++.|+.+|.+.+.+++-.|..+|+.+.+..
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3568888999998887655542 22 223456799999999999999999999999997553
No 260
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=30.54 E-value=27 Score=16.79 Aligned_cols=8 Identities=50% Similarity=1.481 Sum_probs=6.8
Q ss_pred cccCcccC
Q 002472 3 SWGLGWKR 10 (918)
Q Consensus 3 ~~~~~~~~ 10 (918)
+|..+|++
T Consensus 2 HwS~~w~P 9 (10)
T PF00446_consen 2 HWSHGWKP 9 (10)
T ss_pred ccccccCC
Confidence 79999986
No 261
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=30.41 E-value=1.4e+02 Score=31.34 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHh-cCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhcccc
Q 002472 425 EVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV 503 (918)
Q Consensus 425 ~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll-~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~ 503 (918)
.+..++..|.-++.-+.......-....|.-|..|+ ....+.++..++.++-.+...+..........+++..+..++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 355678888888877766666667778999999999 4567889999999987776655544444447777788888877
Q ss_pred CCC
Q 002472 504 GPE 506 (918)
Q Consensus 504 ~~~ 506 (918)
+..
T Consensus 187 ~~~ 189 (257)
T PF08045_consen 187 SKS 189 (257)
T ss_pred ccc
Confidence 643
No 262
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=29.76 E-value=81 Score=36.30 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCC-----ChhhHHHHHHHHHHhcc-chHHHHHh
Q 002472 462 HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGP-----EPRVNKAAARALAILGE-NESLRRAI 530 (918)
Q Consensus 462 ~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~-----~~~i~~~a~~al~~l~~-~~~~~~~~ 530 (918)
..+..+..+|+++++|+.+.+..-++..++.+..+.++..+... ..++.-...+.+-.+.. ....++++
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L 117 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKL 117 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHH
Confidence 45678889999999999999988888888989989998888765 67777777777766643 44444443
No 263
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=29.14 E-value=72 Score=37.95 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=83.5
Q ss_pred cccCcccEEECcCCcchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHHHHHHHHHHHHhh--CChHH-
Q 002472 368 NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAF--ASDTV- 443 (918)
Q Consensus 368 ~~L~~L~~L~ls~N~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~--~~~~~- 443 (918)
+-+|.|.-..-+..+.|++..+.-++.|+..++.. ..--.--++.-|+.+|+....+..+.+...++.++. +....
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL 962 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL 962 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence 45777777666777889999999999999776665 333333445567777877766666655443333321 11110
Q ss_pred ---------------------HHHHhhh----chHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccch
Q 002472 444 ---------------------AQKMLTK----DVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLL 498 (918)
Q Consensus 444 ---------------------~~~v~~~----g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L 498 (918)
+..|.+. -|+|.|-.=-...+..||-..+++++-+--...+...-- -..+.|.|
T Consensus 963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY-iyav~Pll 1041 (1172)
T KOG0213|consen 963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY-IYAVTPLL 1041 (1172)
T ss_pred HHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH-HHHhhHHH
Confidence 1112111 234444433334455566666666554421111110000 11334666
Q ss_pred hccccCCChhhHHHHHHHHHHhc
Q 002472 499 MRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 499 ~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
-..+...|..++..|+.++.+++
T Consensus 1042 eDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHhhccccHHHHHHHHHHHHHHh
Confidence 66667777777777777776665
No 264
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=28.87 E-value=1.3e+02 Score=32.71 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 002472 553 LATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG 608 (918)
Q Consensus 553 ~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~ 608 (918)
+.++.+++.++++.+ ...+|+++|+|-|-..|+..+ +-.+.++..++-...+
T Consensus 68 ~~s~a~~~~l~~~~~---~~~p~~~aGHSlGEysAl~~a-g~~~~ed~~~Lv~~RG 119 (310)
T COG0331 68 LVSLAAYRVLAEQGL---GVKPDFVAGHSLGEYSALAAA-GVLSFEDALKLVRKRG 119 (310)
T ss_pred HHHHHHHHHHHHhcC---CCCCceeecccHhHHHHHHHc-ccccHHHHHHHHHHHH
Confidence 456667788887542 456799999999999998886 4578888887765533
No 265
>PRK11071 esterase YqiA; Provisional
Probab=28.43 E-value=1.6e+02 Score=29.37 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=31.9
Q ss_pred cceEEEecCCCchHHHHHHHHHHHHHhcCCCCccccceeeecChHHHHHHHHHcC
Q 002472 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (918)
Q Consensus 539 ~~riL~LdGGG~rG~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l~~~ 593 (918)
++++++.|=-|- |--.+..+.++.++.+.+ -=.++|.|.||.+|+.++..
T Consensus 32 ~~~v~~~dl~g~-~~~~~~~l~~l~~~~~~~----~~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 32 DIEMIVPQLPPY-PADAAELLESLVLEHGGD----PLGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred CCeEEeCCCCCC-HHHHHHHHHHHHHHcCCC----CeEEEEECHHHHHHHHHHHH
Confidence 466676664442 333444556666654432 13689999999999999854
No 266
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=28.10 E-value=42 Score=32.17 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=22.2
Q ss_pred eEEEecCCCch----HHHHHHHHHHHHHhcCCCCccccceeeecChHHHHH
Q 002472 541 RILSMDGGGMK----GLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLA 587 (918)
Q Consensus 541 riL~LdGGG~r----G~~~~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia 587 (918)
.++-+.||=.. -+-.-++.+.|.+..... =+|+|+||||+++
T Consensus 37 d~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G-----~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 37 DAIFLGGGDTFRLLRQLKETGLDEAIREAYRKG-----GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTT-----SEEEEETHHHHCT
T ss_pred CEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCC-----CEEEEEChHHhhc
Confidence 45667666432 222334555565533211 3599999999884
No 267
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=27.95 E-value=1.4e+02 Score=33.05 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=36.3
Q ss_pred HHHHHHHHHHh-cCCCCccccceeeecChHHHHHHHHHcCCCCHHHHHHHHHHhhc
Q 002472 555 TVQILKEIEKG-TGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGK 609 (918)
Q Consensus 555 ~~~vL~~Le~~-~~~~~~~~fD~i~GTS~Gaiia~~l~~~~~s~~~~~~~y~~~~~ 609 (918)
++.+.+.|.+. .+..+....|+++|+|.|-+.|+..+ +-++.++..++....++
T Consensus 105 ~~a~~~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~A-G~ls~e~al~lv~~R~~ 159 (343)
T PLN02752 105 SLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFA-GALSFEDGLKLVKLRGE 159 (343)
T ss_pred HHHHHHHHHhcCCCcccccCCCeeeeccHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 44455555442 12222345689999999999888876 66899998887664443
No 268
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=27.87 E-value=2.7e+02 Score=30.37 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=58.1
Q ss_pred HhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHHHHHHhccchHH
Q 002472 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESL 526 (918)
Q Consensus 447 v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~ 526 (918)
+-+.-+.+.|..++......++..|..+++.+.... ..+.+.+...+......++..+..++..++..+..
T Consensus 176 ~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~ 246 (335)
T COG1413 176 LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAV 246 (335)
T ss_pred cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhH
Confidence 344466888888999988899999999988777666 34557788888899999999999999888777654
Q ss_pred HHH
Q 002472 527 RRA 529 (918)
Q Consensus 527 ~~~ 529 (918)
...
T Consensus 247 ~~l 249 (335)
T COG1413 247 DAL 249 (335)
T ss_pred HHH
Confidence 443
No 269
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=27.70 E-value=46 Score=30.97 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.2
Q ss_pred eeeecChHHHHHHHHHc
Q 002472 576 LVCGTSTGGMLAIALAV 592 (918)
Q Consensus 576 ~i~GTS~Gaiia~~l~~ 592 (918)
+|+|+|.||.+|.+++.
T Consensus 67 ~itGHSLGGalA~l~a~ 83 (140)
T PF01764_consen 67 VITGHSLGGALASLAAA 83 (140)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHH
Confidence 47999999999999974
No 270
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=1e+02 Score=36.96 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCchhHHHhhccCCh-------HHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 002472 409 DIMQPIIAVLKSFAP-------EEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC 481 (918)
Q Consensus 409 ~~~~~ll~ll~~~~~-------~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~ 481 (918)
++++-++.+|.+.++ ..-..+--||.-++.+.... ++. -|+|-+++-+.+.+.+.+.-|..|+|.+--|
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 456667777754322 22233444555444322211 222 5788889889999999999999999999999
Q ss_pred cccccceeeccCcccchhccccCCChhhHHHHHHHHHHhcc
Q 002472 482 LENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGE 522 (918)
Q Consensus 482 ~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~ 522 (918)
.+...-.-+..++++.++.++..+.--++..++|++.-+.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 87655544566888999999887777778899999877653
No 271
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=27.55 E-value=1.8e+02 Score=33.65 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=96.5
Q ss_pred cEEECcCCcchhHHHHHHhccCCCCchhhhHHHhCCCchhHHHhhccCCh----HHHHHHHHHHHHHhhCChHHHHHHhh
Q 002472 374 ISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAP----EEVKSVLQVVGQLAFASDTVAQKMLT 449 (918)
Q Consensus 374 ~~L~ls~N~~v~e~a~~~L~~L~~~~~~~~~v~~~~~~~~ll~ll~~~~~----~~~~~~l~~L~~l~~~~~~~~~~v~~ 449 (918)
..+..++|+.-+.+++..|..++.+..-....+.++.+..+.+++..++. +....++.++.++.-+.- .....+.
T Consensus 89 ~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~~~~ 167 (713)
T KOG2999|consen 89 MEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWESVS 167 (713)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeeeecc
Confidence 33445677777777888999999887777888999888888888765544 444556777776654332 2333444
Q ss_pred hchHHHHHHHhc--CCChhHHHHHHHHHHHhhcCcccccceeeccCcccchhccccCCChhhHHHHHH
Q 002472 450 KDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAAR 515 (918)
Q Consensus 450 ~g~~p~L~~Ll~--~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~i~~~a~~ 515 (918)
-..+.+...+.. ..+..+-..|+.-+-+++.+++.-.+.+.++--+.-|...+...+.++...|..
T Consensus 168 ~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 168 NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 444555555542 234456666778888999999988888877777777888888888777766443
No 272
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=26.47 E-value=42 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=24.9
Q ss_pred ceEEEecCCCchHHHH----HHHHHHHHHhcCCCCccccceeeecChHHHHHHHH
Q 002472 540 LRILSMDGGGMKGLAT----VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIAL 590 (918)
Q Consensus 540 ~riL~LdGGG~rG~~~----~~vL~~Le~~~~~~~~~~fD~i~GTS~Gaiia~~l 590 (918)
.-++.+.||=..-+.. -++.+.|.+..... -.++||||||+++.--
T Consensus 80 ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G-----~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 80 AEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNG-----TPYIGWSAGANVAGPT 129 (233)
T ss_pred CCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCC-----CEEEEECHHHHhhhcc
Confidence 3457777665443332 22333343322211 2589999999986543
No 273
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=94 Score=33.18 Aligned_cols=73 Identities=27% Similarity=0.246 Sum_probs=54.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceee--ccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHhh
Q 002472 454 KSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT--SESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIR 531 (918)
Q Consensus 454 p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~~ 531 (918)
-.|+.|+.+..+.|++.|..-+-+++.+ .-++.. +...++-+.+|+...++ .+.|+.|+.++.+++.+++.+-
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 4678899999999999888887777766 222222 34456667888888777 6778889999999988777653
No 274
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=25.09 E-value=3.8e+02 Score=30.56 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=74.9
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhhCChHH---HHHHhhhchHHHHHHHhcCCCh-----h-H-HHHHHHHHHHhhcCcc
Q 002472 414 IIAVLKSFAPEEVKSVLQVVGQLAFASDTV---AQKMLTKDVLKSLKLLCAHKNP-----E-V-QRFALLAVGNLAFCLE 483 (918)
Q Consensus 414 ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~---~~~v~~~g~~p~L~~Ll~~~~~-----~-v-~~~al~a~~nl~~~~~ 483 (918)
.+.+.+..+.+.+..++-.+..++.+.|-. ...+|++=..+-+.+|+..++. . | +.-++..++.++...+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344555555666777888888888777754 3479999778999999876533 1 2 1112233444433332
Q ss_pred --cccceeeccCcccchhccccC-CChh------hHHHHHHHHHHhccchHHHHHhhcCCCCCCcceEEEecCCCchHHH
Q 002472 484 --NRRILVTSESLRDLLMRLTVG-PEPR------VNKAAARALAILGENESLRRAIRGRQVPKQGLRILSMDGGGMKGLA 554 (918)
Q Consensus 484 --~~~~~~~~~~~~~~L~~ll~~-~~~~------i~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~riL~LdGGG~rG~~ 554 (918)
.+.+++ +.+|.|..++.. .+++ +..++-.++..++..+. |.+.| +.|||+|.+.
T Consensus 96 lAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-------------G~~~L-ia~G~~~~~~ 158 (698)
T KOG2611|consen 96 LASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-------------GLMTL-IASGGLRVIA 158 (698)
T ss_pred hccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-------------hhHHH-HhcCchHHHH
Confidence 334444 456777777754 3344 55666666766665542 22222 3578877766
Q ss_pred HHH
Q 002472 555 TVQ 557 (918)
Q Consensus 555 ~~~ 557 (918)
++.
T Consensus 159 Q~y 161 (698)
T KOG2611|consen 159 QMY 161 (698)
T ss_pred HHH
Confidence 543
No 275
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.94 E-value=3e+02 Score=34.57 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=102.3
Q ss_pred HhhhccCCC-ceeecccccccCcccEEECcCC--cchhHHHHHHhccCCCCchhh-hHHHhCCCchhHHHhhccCChHHH
Q 002472 351 AKIMQDQEN-RVVVGKDENAVRQLISMISSDN--RHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEV 426 (918)
Q Consensus 351 ~~ll~l~~N-~l~ip~~~~~L~~L~~L~ls~N--~~v~e~a~~~L~~L~~~~~~~-~~v~~~~~~~~ll~ll~~~~~~~~ 426 (918)
.+|+.+..+ +..+..+-+..--++.|+-+.+ ++-+.-+.-.|..|....... ....+.+.+..=+..+..+.....
T Consensus 537 AKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 537 AKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred HHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 345444433 3345555444444455544222 233344455666666543333 555566655533344555322333
Q ss_pred HH-HHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcC----ccccccee------------
Q 002472 427 KS-VLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC----LENRRILV------------ 489 (918)
Q Consensus 427 ~~-~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~----~~~~~~~~------------ 489 (918)
++ .+=||+.|-..-+.....-.+.+|-.+|..++....++|+..|+-|+|.+.-+ -+.+...+
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~ 696 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTS 696 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhh
Confidence 44 67788888755555566778889999999999999999999999999988765 23333332
Q ss_pred eccCcc---cchhccccCCChhhHHHHHHHHHHhc
Q 002472 490 TSESLR---DLLMRLTVGPEPRVNKAAARALAILG 521 (918)
Q Consensus 490 ~~~~~~---~~L~~ll~~~~~~i~~~a~~al~~l~ 521 (918)
++.-+. ..++.+++...+-++++.+-+++..+
T Consensus 697 ~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 697 IEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 222222 24555667777888888888777663
No 276
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.44 E-value=6.6e+02 Score=26.18 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=96.4
Q ss_pred HHHHhccCCCCchhhhHHHhCCCc---hhHHHhhccCCh--HHHHHHHHHHHHHhhCCh-HHHHHHhhhchHHHHHHHhc
Q 002472 388 ACSALSSLAGDVSVAMLLMKCDIM---QPIIAVLKSFAP--EEVKSVLQVVGQLAFASD-TVAQKMLTKDVLKSLKLLCA 461 (918)
Q Consensus 388 a~~~L~~L~~~~~~~~~v~~~~~~---~~ll~ll~~~~~--~~~~~~l~~L~~l~~~~~-~~~~~v~~~g~~p~L~~Ll~ 461 (918)
++.-|..++.+......-+++.+- .+.+..-....+ -....++..++.++..+| +.+..+...+++|-..+...
T Consensus 99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 344455666665555444444433 333333222222 334558999999988766 45667889999999999998
Q ss_pred CCChhHHHHHHHHHHHhhcCcccccc--------eeeccCcccchhccccCCChhhHHHHHHHHHHhccchHHHHHhhc
Q 002472 462 HKNPEVQRFALLAVGNLAFCLENRRI--------LVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRG 532 (918)
Q Consensus 462 ~~~~~v~~~al~a~~nl~~~~~~~~~--------~~~~~~~~~~L~~ll~~~~~~i~~~a~~al~~l~~~~~~~~~~~~ 532 (918)
.+...-++.|.-.++-|...+.--.- ..+..=+...+.++.+.+.++..|.+.++.-.+..++..+++.+.
T Consensus 179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88887777787777766544421111 112333445666777889999999999999999999988887765
No 277
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.40 E-value=2.6e+02 Score=27.03 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred HhCCCchhHHHhhccC--ChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHh
Q 002472 406 MKCDIMQPIIAVLKSF--APEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (918)
Q Consensus 406 ~~~~~~~~ll~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl 478 (918)
+...++......+... +..+...++..|..++..++..-+.|.++=-+++|...+...+..++.+|..-+-.+
T Consensus 55 l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 55 LSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred ccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333444444444422 356677899999999988877677777766699999999999999999888665544
No 278
>PF06361 RTBV_P12: Rice tungro bacilliform virus P12 protein; InterPro: IPR009417 This family consists of several Rice tungro bacilliform virus P12 proteins. The function of this family is unknown [].
Probab=24.02 E-value=34 Score=28.07 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHHHHhcC---CCCccccceeeecChHHHHHHH
Q 002472 549 GMKGLATVQILKEIEKGTG---KRIHELFDLVCGTSTGGMLAIA 589 (918)
Q Consensus 549 G~rG~~~~~vL~~Le~~~~---~~~~~~fD~i~GTS~Gaiia~~ 589 (918)
..+|+.++..|++|.+.++ ..+.....--+..|+|||+-+.
T Consensus 46 askglvqlyalqeidkkinnl~aqv~k~pttsgs~sagaivpag 89 (110)
T PF06361_consen 46 ASKGLVQLYALQEIDKKINNLSAQVSKIPTTSGSSSAGAIVPAG 89 (110)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHhhhhcCccCCCCCCcceeeecC
Confidence 4689999999999988654 1233333334455678877654
No 279
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.32 E-value=85 Score=35.52 Aligned_cols=104 Identities=20% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCCCCEEeCCCCCCCCCCccccccCCCCccEEEccCCCCc-----ccCcccCCCCCCcEEeccCCCCC-CCccccc---C
Q 002472 148 LTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-----ALPVDLTRLPVLEKLYLDNNKLS-TLPPELG---A 218 (918)
Q Consensus 148 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~---~ 218 (918)
-+.+++++++.|. +....|-.+..-. --|.++.|.++ .++.. ..-..|.+++|+.|... .+|..+. .
T Consensus 164 npr~r~~dls~np-i~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNP-IGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCc-ccccCCccccCCC--CccchhhhhhhhhHHHHhhhh-hccccccccccccCCCCccchhHHHHhhh
Confidence 3567788888887 3333332221110 01445555444 22211 11234666677766665 4553221 1
Q ss_pred CcCcceeeccccccc--cc--chhccCCCCCcEEEeecCCC
Q 002472 219 MKNLKVLIVDNNMLV--CV--PVELRECVGLVELSLEHNRL 255 (918)
Q Consensus 219 l~~L~~L~Ls~N~l~--~l--p~~l~~l~~L~~L~L~~N~l 255 (918)
-.-|+.++.+...++ .+ +-..+.-+.|...+++.|..
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 233555555554444 11 11223344566666655543
No 280
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=23.21 E-value=2.9e+02 Score=30.16 Aligned_cols=97 Identities=25% Similarity=0.287 Sum_probs=67.2
Q ss_pred chhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceee
Q 002472 411 MQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVT 490 (918)
Q Consensus 411 ~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~ 490 (918)
...++..+...+..+...+...+..+ -...++|.|..++.+.+..++..|..++|.+-
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------- 102 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG----------- 102 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------
Confidence 44555556665555555555554322 23457999999999999999888888776432
Q ss_pred ccCcccchhcccc-CCChhhHHHHHHHHHHhccchHHHHH
Q 002472 491 SESLRDLLMRLTV-GPEPRVNKAAARALAILGENESLRRA 529 (918)
Q Consensus 491 ~~~~~~~L~~ll~-~~~~~i~~~a~~al~~l~~~~~~~~~ 529 (918)
+....+.|+.++. +.+..++..+.+++..++....+...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l 142 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPL 142 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHH
Confidence 3344577777777 58889999999999988876644443
No 281
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=23.14 E-value=5.4e+02 Score=25.76 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=53.8
Q ss_pred HHHHHHHhhCChHHHHHHhhh--ch--HHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeecc--Ccccchhcccc
Q 002472 430 LQVVGQLAFASDTVAQKMLTK--DV--LKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSE--SLRDLLMRLTV 503 (918)
Q Consensus 430 l~~L~~l~~~~~~~~~~v~~~--g~--~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~--~~~~~L~~ll~ 503 (918)
...+.++. .....++.+++. +. +.+|..+..+.+..-+..++.++-|.+|..+.+..++-+. ++++.|+.-+.
T Consensus 79 a~vl~NlS-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 79 ASVLANLS-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhc-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 34444444 333444444444 33 7888888888877777777899999999999998777543 67777777665
Q ss_pred CCChhhHHH
Q 002472 504 GPEPRVNKA 512 (918)
Q Consensus 504 ~~~~~i~~~ 512 (918)
.++ ++-++
T Consensus 158 GpE-e~d~e 165 (192)
T PF04063_consen 158 GPE-ELDEE 165 (192)
T ss_pred CCC-cCCHH
Confidence 444 34433
No 282
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=1.3e+02 Score=35.06 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=69.5
Q ss_pred hccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccceeeccCcccc
Q 002472 418 LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDL 497 (918)
Q Consensus 418 l~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~~~~~~~~~ 497 (918)
.....+.++..+..+.+.+..+-+... ++ -.+|.+..=+....+.-+..++..+|.++.+...|-... -..++|.
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~ 299 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPV 299 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHH
Confidence 334444555555555555543322211 11 123343333334477777888899999999888877766 6788999
Q ss_pred hhccccCCChhhHHHHHHHHHHhc---cchHHHH
Q 002472 498 LMRLTVGPEPRVNKAAARALAILG---ENESLRR 528 (918)
Q Consensus 498 L~~ll~~~~~~i~~~a~~al~~l~---~~~~~~~ 528 (918)
+...+..+++++++.+..++..++ +|+++.+
T Consensus 300 lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~ 333 (569)
T KOG1242|consen 300 LSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK 333 (569)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999999999999997775 3444443
No 283
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=22.11 E-value=1.7e+02 Score=36.04 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=66.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCC---hhHHHHHHHHHHHhhcCcccccce
Q 002472 412 QPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKN---PEVQRFALLAVGNLAFCLENRRIL 488 (918)
Q Consensus 412 ~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~---~~v~~~al~a~~nl~~~~~~~~~~ 488 (918)
+.+++.|..++.+++.+.+.++..+..-++.....-+ .-.+|.+..+-.+.+ ..|+.-|+.+++.++.-.....-.
T Consensus 912 PLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~ 990 (1030)
T KOG1967|consen 912 PLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL 990 (1030)
T ss_pred HHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence 4445556777777767777777766543322211111 135788888877666 578888999999888744333222
Q ss_pred eeccCcccchhccccCCChhhHHHHHHH
Q 002472 489 VTSESLRDLLMRLTVGPEPRVNKAAARA 516 (918)
Q Consensus 489 ~~~~~~~~~L~~ll~~~~~~i~~~a~~a 516 (918)
--...++..|...+++.+--+|++|..+
T Consensus 991 ~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 991 SFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2245566777788888888888887754
No 284
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=20.77 E-value=5.2e+02 Score=28.92 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=52.2
Q ss_pred CCchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCcccccce
Q 002472 409 DIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRIL 488 (918)
Q Consensus 409 ~~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~ 488 (918)
+++..++.+....+......|+.+|.+++..+. +.++++|.++.|.+.+.++...+....+.++=.+.-....++-+
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 445555555556555666779999999998764 46899999999999988865555444445555554444444434
Q ss_pred e
Q 002472 489 V 489 (918)
Q Consensus 489 ~ 489 (918)
.
T Consensus 185 ~ 185 (371)
T PF14664_consen 185 R 185 (371)
T ss_pred c
Confidence 4
No 285
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.23 E-value=73 Score=31.98 Aligned_cols=17 Identities=47% Similarity=0.829 Sum_probs=15.1
Q ss_pred eeeecChHHHHHHHHHc
Q 002472 576 LVCGTSTGGMLAIALAV 592 (918)
Q Consensus 576 ~i~GTS~Gaiia~~l~~ 592 (918)
.++|.|+||-+|++++.
T Consensus 74 ~l~G~SAGg~la~~~~~ 90 (211)
T PF07859_consen 74 VLIGDSAGGHLALSLAL 90 (211)
T ss_dssp EEEEETHHHHHHHHHHH
T ss_pred EEeecccccchhhhhhh
Confidence 37999999999999973
No 286
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.01 E-value=1.9e+02 Score=34.52 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=73.3
Q ss_pred CchhHHHhhccCChHHHHHHHHHHHHHhhCChHHHHHHhhhchHHHHHHHhcCCChhHHHHHHHHHHHhhcCccccccee
Q 002472 410 IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILV 489 (918)
Q Consensus 410 ~~~~ll~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~v~~~g~~p~L~~Ll~~~~~~v~~~al~a~~nl~~~~~~~~~~~ 489 (918)
....+++...+.+..+....++.|..+.- +..++...+-.+...++..=+....+.|+.+|+.|++.+--...+.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 33444444556666777778887776663 3333333333455556666677888899999999999875322221
Q ss_pred eccCcccchhcccc-CCChhhHHHHHHHHHHhccc------------hHHHHHhhcCCCCCCcceEEEec
Q 002472 490 TSESLRDLLMRLTV-GPEPRVNKAAARALAILGEN------------ESLRRAIRGRQVPKQGLRILSMD 546 (918)
Q Consensus 490 ~~~~~~~~L~~ll~-~~~~~i~~~a~~al~~l~~~------------~~~~~~~~~~~~~~~~~riL~Ld 546 (918)
+..+.-.++.+++ .+.++++..+-..++.-... ..+||.+..+..|+-.+|.++++
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~ 229 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSID 229 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Confidence 1122234444554 35667776554433222111 13344444455566666777766
Done!