Query 002472
Match_columns 918
No_of_seqs 691 out of 6185
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 16:47:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002472.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1192-1195//hhsearch_pdb/002472hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 1.0 1 1 351.5 20.0 259 535-862 11-313 (373)
2 4eco_A Uncharacterized protein 1.0 1 1 208.6 10.3 222 119-342 200-460 (636)
3 4akf_A VIPD; transferase; 2.90 1.0 1 1 206.7 15.3 206 538-788 35-305 (577)
4 3rgz_A Protein brassinosteroid 1.0 1 1 206.3 17.4 246 119-382 94-354 (768)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 205.9 15.2 221 119-341 442-699 (876)
6 4ecn_A Leucine-rich repeat pro 1.0 1 1 204.9 16.0 202 125-333 323-636 (876)
7 3tu3_B EXOU; type III secretio 1.0 1 1 202.2 10.5 199 537-788 125-383 (711)
8 3rgz_A Protein brassinosteroid 1.0 1 1 201.7 17.6 201 120-329 121-331 (768)
9 4eco_A Uncharacterized protein 1.0 1 1 198.0 14.5 205 123-332 247-473 (636)
10 1ogq_A PGIP-2, polygalacturona 1.0 1 1 195.2 10.9 242 125-385 50-305 (313)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=1.00 E-value=1 Score=351.49 Aligned_cols=259 Identities=22% Similarity=0.334 Sum_probs=207.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHC----C---CCCCCCCCEEEECCHHHHHHHHHHCCC------CCHHHHH
Q ss_conf 89876149984199700778999999999850----9---997534324652275899999998379------9998999
Q 002472 535 VPKQGLRILSMDGGGMKGLATVQILKEIEKGT----G---KRIHELFDLVCGTSTGGMLAIALAVKL------MTLDQCE 601 (918)
Q Consensus 535 ~~~~~~~iL~ldGGG~rG~~~~~iL~~Le~~~----~---~~~~~~fD~i~GtS~Gaiia~~l~~~~------~s~~~~~ 601 (918)
.++.+.++|+|||||+||+++++||++||+.+ | .+++++||+|+|||+|||+|++++.+. ++++++.
T Consensus 11 ~~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el~ 90 (373)
T 1oxw_A 11 QLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIV 90 (373)
T ss_dssp -CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 78997499997689689999999999999987762598667704217889997789999999856786677767999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHCCCCCCCCEE
Q ss_conf 99998510015898999821456888778886403564058860578887899999999822988872010124899979
Q 002472 602 EIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKV 681 (918)
Q Consensus 602 ~~y~~~~~~iF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~ 681 (918)
++|.++..++|.... .+.+++|+.+.+++.+++.|++ ..+.+.. .++
T Consensus 91 ~~~~~~~~~iF~~~~--------------------------~l~~~~~~~~~L~~~l~~~~~~----~~l~d~~---~~~ 137 (373)
T 1oxw_A 91 PFYFEHGPQIFNPSG--------------------------QILGPKYDGKYLMQVLQEKLGE----TRVHQAL---TEV 137 (373)
T ss_dssp HHHHHHHHHHTCCCC--------------------------CSSSCSCCCHHHHHHHHHHHTT----CBGGGCS---SEE
T ss_pred HHHHHHHHHHCCCCC--------------------------CCCCCCCCCHHHHHHHHHHHCC----CCHHHCC---CCE
T ss_conf 999996475468887--------------------------6464886868999999999786----7288808---988
Q ss_pred EEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99974202589953473057899999998764567987311389987874455443345888513779987503689898
Q 002472 682 FTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL 761 (918)
Q Consensus 682 ~v~~t~~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~rASsAaP~~F 761 (918)
+|++ +|..++++++|++|+.+... ..+..+|+|+|||||+|+||
T Consensus 138 ~i~a--td~~~~~~~~f~~~~~~~~~----------------------------------~~~~~l~~av~ASsA~P~~F 181 (373)
T 1oxw_A 138 VISS--FDIKTNKPVIFTKSNLANSP----------------------------------ELDAKMYDISYSTAAAPTYF 181 (373)
T ss_dssp EEEE--EETTTTEEEEEESSSTTTCG----------------------------------GGCCBHHHHHHHHHCCTTTS
T ss_pred EEEE--EECCCCCEEEEECCCCCCCC----------------------------------CCCCHHHHHHHHHCCCCCCC
T ss_conf 9995--88899975898589877787----------------------------------66730999999974687576
Q ss_pred CCCCCC-----CC----EEEECCCCC-CCCHHHHHHHHHHHCCCCC-----------CCEEEEECCCCCCCC---C---C
Q ss_conf 774489-----82----155242024-8908999999999399999-----------989999778999985---5---7
Q 002472 762 DDFSDD-----VF----RWQDGAIVA-NNPTIFAIREAQLLWPDTR-----------IDCLVSIGCGSVPTK---T---R 814 (918)
Q Consensus 762 ~p~~~~-----~~----~~vDGGi~~-NnP~~~al~ea~~~~~~~~-----------~~~vvSiGTG~~~~~---~---~ 814 (918)
+|+.++ |. .|+|||+.+ |||+..|+.|++++|+..+ ..+|||||||..+.. . .
T Consensus 182 ~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~~~~~~~~~~~~~~~~~~~~~vvSlGTG~~~~~~~~~~~~~ 261 (373)
T 1oxw_A 182 PPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKE 261 (373)
T ss_dssp CCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBCTTSSCCCHHH
T ss_pred CCEEEECCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 86796114778860412463673024688489999999987356842233454666836999956888877554567555
Q ss_pred CCCCCCCCCCCEEEEE--CCCHHHHHHHHHHHCCCC-CCCCEEEECC-CCCH
Q ss_conf 8995333443432100--125267999999877999-9998598299-9902
Q 002472 815 RGGWRYLDTGQVLIES--ACSVDRAEEALSTLLPML-PEIQYYRFNP-GSIS 862 (918)
Q Consensus 815 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~YfR~np-~~~~ 862 (918)
...|+...|..+++++ ..+++.++..+..+++.. .+.+|||||| .++.
T Consensus 262 ~~~wG~~~w~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~ 313 (373)
T 1oxw_A 262 AATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTG 313 (373)
T ss_dssp HTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 2010167689999999997548999999999962137888479975887887
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=208.61 Aligned_cols=222 Identities=19% Similarity=0.243 Sum_probs=166.7
Q ss_pred HHCCCCCCCCEEEEECCCCCCC-----------------CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 0007999965899226878976-----------------862224--899878992879999999865213689786589
Q 002472 119 RVVKRREPLRAVVLTKGVGSGH-----------------LSDGIG--VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAV 179 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 179 (918)
..+..+++|+.|+|++|.+++. +|..+. ++++|+.|++++|. +.+.+|..+.++++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCC-CCCCCHHHHHCCCCCCEE
T ss_conf 7772564787898868823664232212222210010248632200446878889804885-776283888349997889
Q ss_pred ECCCCC-CC--CCCCCCCCC------CCCCEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCC-CCCHHCCCCCCCCE
Q ss_conf 733777-86--568115899------987688154887888851--0068757555560036464-24400139999767
Q 002472 180 SLCGLG-LS--ALPVDLTRL------PVLEKLYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVE 247 (918)
Q Consensus 180 ~Ls~n~-l~--~lp~~l~~l------~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 247 (918)
++++|. ++ .+|..++.+ ++|++|++++|.++.+|. .+..+++|+.|++++|.++ .+| .+..+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCE
T ss_conf 784798876653357887543046578888898979937766765554257888989690880705166-6478898898
Q ss_pred EEEECCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCC-CCC--CCCCCEEECCCCCCCC--CCCCCHHHH-HHCCCCCCC
Q ss_conf 88605888898324469999-8799910898999767-478--8887689711788999--967201345-510357763
Q 002472 248 LSLEHNRLVRPLLDFRAMAE-LKILRLFGNPLEFLPE-ILP--LLKLRHLSLANIRIVA--DENLRSVNV-QIEMENNSY 320 (918)
Q Consensus 248 L~L~~n~l~~~~~~l~~l~~-L~~L~l~~N~l~~~~~-l~~--l~~L~~L~L~~N~i~~--~~~l~~l~~-~~~l~~l~~ 320 (918)
|++++|.++..+..+..+++ |+.|++++|.++.+|. +.. +++|+.|++++|.+.+ +..+..... ...+.+++.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCE
T ss_conf 98989940303375651023686898529827544665533345766889774885788652442002201125898888
Q ss_pred CCCCCCCCCHHHHHHH-HCCCCC
Q ss_conf 4665320002234454-204799
Q 002472 321 FGASRHKLSAFFSLIF-RFSSCH 342 (918)
Q Consensus 321 l~l~~n~l~~~~~~~~-~l~~l~ 342 (918)
++++.|.+...++.++ .+++++
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCS
T ss_pred EECCCCCCCCCCHHHHCCCCCCC
T ss_conf 97727966867878871589889
No 3
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila}
Probab=1.00 E-value=1 Score=206.73 Aligned_cols=206 Identities=20% Similarity=0.228 Sum_probs=141.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76149984199700778999999999850999753432465227589999999837999989999999851001589899
Q 002472 538 QGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFP 617 (918)
Q Consensus 538 ~~~~iL~ldGGG~rG~~~~~iL~~Le~~~~~~~~~~fD~i~GtS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~~ 617 (918)
++...|+|+|||+||++++|+|++|++. .+...||+|+|||+|||+|++++.+ ++.+++.++|..+....|.+..+
T Consensus 35 ~~~~~LvLsGGG~RG~~hiGVL~aLee~---Gi~p~~d~IaGTSaGAIiAa~~A~G-~s~~el~~~~~~l~~~~~~d~s~ 110 (577)
T 4akf_A 35 PEHKGLVLSGGGAKGISYLGMIQALQER---GKIKNLTHVSGASAGAMTASILAVG-MDIKDIKKLIEGLDITKLLDNSG 110 (577)
T ss_dssp CCCCEEEECCCSSGGGTHHHHHHHHHHT---TCGGGCCEEEECTHHHHHHHHHHTT-CCHHHHHHHHTTCCTTTTSCSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECHHHHHHHHHHCC-CCHHHHHHHHHHCCHHHHHCCCC
T ss_conf 7736999778589999999999999976---9986677798676818989999809-99999999998399999608652
Q ss_pred CC--CHHHHHHHHHHHHH--------HHCCCC--EEEEEECCCCCHH---HHHHHHHHHHCC------------------
Q ss_conf 98--21456888778886--------403564--0588605788878---999999998229------------------
Q 002472 618 KD--NEAATWREKLDQIY--------KSSSQS--FRVVVHGSKHSAD---QFERLLKEMCAD------------------ 664 (918)
Q Consensus 618 ~~--~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~---~le~~l~~~~~~------------------ 664 (918)
.. .....+...++..+ ....+. .+.....+.|++. .+++.+++.+..
T Consensus 111 l~~~~~~~ll~~~l~~~~~~~~k~~l~~v~~~~~~~l~~~~Gl~~G~~~~~le~wl~e~l~~~~~d~~~~~~~~~~~~~~ 190 (577)
T 4akf_A 111 VGFRARGDRFRNILDVIYMMQMKKHLESVQQPIPPEQQMNYGILKQKIALYEDKLSRAGIVINNVDDIINLTKSVKDLEK 190 (577)
T ss_dssp SSSCBCSHHHHHHHHHHHHHHHHHHHTTSCSCCCSTHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 23453155654312233210111111110134553211447513785268899999998720133210000000012456
Q ss_pred --------------------CCCCCHHCCCCC-----------CCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf --------------------888720101248-----------9997999974202589953473057899999998764
Q 002472 665 --------------------EDGDLLIESSVK-----------NIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFS 713 (918)
Q Consensus 665 --------------------~~~~~~~~~~~~-----------~~~~~~v~~t~~~~~~~~~~~f~~y~~~~~~~~~~~~ 713 (918)
...+.+|.+... ..+++.+++| |..++++++|++...+
T Consensus 191 L~~~~~~~p~~l~~~kg~~tg~~~iTF~dL~~l~~~~p~~~~~~~k~L~IvAT--Dv~TGk~v~F~~~~~~--------- 259 (577)
T 4akf_A 191 LDKALNSIPTELKGAKGEQLENPRLTLGDLGRLRELLPEENKHLIKNLSVVVT--NQTKHELERYSEDTTP--------- 259 (577)
T ss_dssp HHHHHHTSCSCCBCTTCCBCCCSSCBHHHHHHHHHHSCGGGGGGSCEEEEEEE--ETTTTEEEEEETTTCT---------
T ss_pred HHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEE--ECCCCCEEEECCCCCC---------
T ss_conf 66542023200001345556788867999764025674322457871999999--8899998983799989---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 567987311389987874455443345888513779987503689898774-489821552420248908999999
Q 002472 714 ISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDF-SDDVFRWQDGAIVANNPTIFAIRE 788 (918)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~rASsAaP~~F~p~-~~~~~~~vDGGi~~NnP~~~al~e 788 (918)
+..+++|+|||||+|++|+|+ .+++..|+|||+.+|+|+..++.+
T Consensus 260 ------------------------------d~~l~dAVRASsAlP~~F~PV~~IdG~~yvDGGV~~N~PV~~lfd~ 305 (577)
T 4akf_A 260 ------------------------------QQSIAQVVQWSGAHPVLFVPGRNAKGEYIADGGILDNMPEIEGLDR 305 (577)
T ss_dssp ------------------------------TSBHHHHHHHHTCCTTTBCCEECTTCCEEECTTSSSCCCCCTTSCG
T ss_pred ------------------------------CCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCCCCCCCHHHHHHC
T ss_conf ------------------------------8789999999828304125878689989777873467756998724
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=206.32 Aligned_cols=246 Identities=20% Similarity=0.180 Sum_probs=163.8
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCC-CC--
Q ss_conf 0007999965899226878976862--224899878992879999999865213-68978658973377786568-11--
Q 002472 119 RVVKRREPLRAVVLTKGVGSGHLSD--GIGVLTRLMRSDLSTSGPGNNMGSGFC-DHWKTVTAVSLCGLGLSALP-VD-- 192 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp-~~-- 192 (918)
..+..+++|+.|+|++|.+.+.+|. .+.++++|++|++++|. +.+..+..+ .++++|++|++++|.++..+ ..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 33245788998989898578707896787278899989896882-67747977856388999898979835885871556
Q ss_pred -CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCE
Q ss_conf -58999876881548878888510068757555560036464244001399997678860588889832-4469999879
Q 002472 193 -LTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKI 270 (918)
Q Consensus 193 -l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~ 270 (918)
+..+++|++|++++|.+....+ +..+++|++|++++|.+...+..+.++++|++|++++|.+++..+ .+..+++|+.
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred HHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
T ss_conf 64358988989897880346578-45478689898928827887711126999998979488587816577744888898
Q ss_pred EEEECCCCC-CCCCCCCCCCCCEEECCCCCCCC--CCCCCHHHHHHCCCCCCCCCCCCCCCCHHHH-HHHHCCCCCCCHH
Q ss_conf 991089899-97674788887689711788999--9672013455103577634665320002234-4542047998412
Q 002472 271 LRLFGNPLE-FLPEILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLL 346 (918)
Q Consensus 271 L~l~~N~l~-~~~~l~~l~~L~~L~L~~N~i~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~~-~~~~l~~l~~~~l 346 (918)
|++++|.+. .++.. .+++|+.|++++|.+++ +..+.. .+++++.+++..|.+.+..+ .+.++++++.+
T Consensus 252 L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-- 323 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL-- 323 (768)
T ss_dssp EECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEEECCCGGGGGCTTCCEE--
T ss_pred EECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHH-----HCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE--
T ss_conf 989888665716724-3687898979178557725888884-----46868899896896778423677558776677--
Q ss_pred HHHHHHHHCCCCCCE--EECCC-CCCCCCCCEEECCCCC
Q ss_conf 688875420578841--10255-6544752189876891
Q 002472 347 ASALAKIMQDQENRV--VVGKD-ENAVRQLISMISSDNR 382 (918)
Q Consensus 347 ~~~L~~l~~l~~n~~--~i~~~-~~~L~~L~~L~ls~n~ 382 (918)
+++.|.+ .+|.+ ++.+++|+.|+++.|.
T Consensus 324 --------~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 324 --------ALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp --------ECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred --------ECCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf --------8978852573797887248888788484784
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=205.92 Aligned_cols=221 Identities=19% Similarity=0.234 Sum_probs=149.2
Q ss_pred HHCCCCCCCCEEEEECCCCCC-----------------CCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 000799996589922687897-----------------6862224--899878992879999999865213689786589
Q 002472 119 RVVKRREPLRAVVLTKGVGSG-----------------HLSDGIG--VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAV 179 (918)
Q Consensus 119 ~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 179 (918)
..+..+++|+.|+|++|.+++ .+|..+. ++++|+.|+|++|. +.+.+|..+.++++|+.|
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCEE
T ss_conf 8875699987897968867887465322332222224458744402559997789871898-875273877379998999
Q ss_pred ECCCCC-CC--CCCCCCCC-------CCCCCEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCE
Q ss_conf 733777-86--56811589-------9987688154887888851--006875755556003646424400139999767
Q 002472 180 SLCGLG-LS--ALPVDLTR-------LPVLEKLYLDNNKLSTLPP--ELGAMKNLKVLIVDNNMLVCVPVELRECVGLVE 247 (918)
Q Consensus 180 ~Ls~n~-l~--~lp~~l~~-------l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 247 (918)
+|++|+ ++ .+|..++. +++|++|++++|.++.+|. .+..+++|+.|++++|.++.+| .+..+++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred ECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCH-HHCCCCCCEE
T ss_conf 896898765664617787523301556883199822894776187235515898898989799825621-2247985007
Q ss_pred EEEECCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCC-CCCC--CCCCEEECCCCCCCCC-CCCCHHHHHHCCCCCCCCC
Q ss_conf 88605888898324469999-8799910898999767-4788--8876897117889999-6720134551035776346
Q 002472 248 LSLEHNRLVRPLLDFRAMAE-LKILRLFGNPLEFLPE-ILPL--LKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFG 322 (918)
Q Consensus 248 L~L~~n~l~~~~~~l~~l~~-L~~L~l~~N~l~~~~~-l~~l--~~L~~L~L~~N~i~~~-~~l~~l~~~~~l~~l~~l~ 322 (918)
|++++|.+...+..+..+++ |+.|++++|.++.+|. +..+ ++|+.|++++|.+.+. +.+..-.....+.+++.++
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred EECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEE
T ss_conf 98718712503587752511498999849978747644522556777889770884788643200000013579768898
Q ss_pred CCCCCCCHHHHHHH-HCCCC
Q ss_conf 65320002234454-20479
Q 002472 323 ASRHKLSAFFSLIF-RFSSC 341 (918)
Q Consensus 323 l~~n~l~~~~~~~~-~l~~l 341 (918)
++.|.+...+..++ .++++
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCC
T ss_pred CCCCCCCCCCHHHHCCCCCC
T ss_conf 31996886597887138988
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=204.93 Aligned_cols=202 Identities=18% Similarity=0.146 Sum_probs=128.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCC--------------------------------------
Q ss_conf 99658992268789768622248998789928-799999998--------------------------------------
Q 002472 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDL-STSGPGNNM-------------------------------------- 165 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~~~~~~-------------------------------------- 165 (918)
.+++.|+|+++++.+.+|..++++++|+.|+| ++|. +.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9798998724789994855774155562843012563-356664222344544115678887776666542037511156
Q ss_pred --------------------------------------CCCCCCCCCCCCEEECCCCCCCC------------------C
Q ss_conf --------------------------------------65213689786589733777865------------------6
Q 002472 166 --------------------------------------GSGFCDHWKTVTAVSLCGLGLSA------------------L 189 (918)
Q Consensus 166 --------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~------------------l 189 (918)
+|..+.++++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78787765073324322235442312040566676152118875699987897968867887465322332222224458
Q ss_pred CCCCC--CCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCC-CC--CCCHHCCCCC-------CCCEEEEECCCCC
Q ss_conf 81158--9998768815488788-885100687575555600364-64--2440013999-------9767886058888
Q 002472 190 PVDLT--RLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNM-LV--CVPVELRECV-------GLVELSLEHNRLV 256 (918)
Q Consensus 190 p~~l~--~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~-------~L~~L~L~~n~l~ 256 (918)
|..++ .+++|++|+|++|.+. .+|..+.++++|+.|++++|+ ++ .+|..+.+++ +|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 74440255999778987189887527387737999899989689876566461778752330155688319982289477
Q ss_pred CCCC--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCHHHHHHCCCC-CCCCCCCCCCCCHHH
Q ss_conf 9832--44699998799910898999767478888768971178899996-7201345510357-763466532000223
Q 002472 257 RPLL--DFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADE-NLRSVNVQIEMEN-NSYFGASRHKLSAFF 332 (918)
Q Consensus 257 ~~~~--~l~~l~~L~~L~l~~N~l~~~~~l~~l~~L~~L~L~~N~i~~~~-~l~~l~~~~~l~~-l~~l~l~~n~l~~~~ 332 (918)
..+. .+..+++|+.|++++|.+..+|.+..+++|+.|++++|.+...+ .+. .+++ ++.++++.|.+...+
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~------~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFC------AFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSC------EECTTCCEEECCSSCCCSCC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCHHHHH------HCCCCCCEEECCCCCCCCCC
T ss_conf 618723551589889898979982562122479850079871871250358775------25114989998499787476
Q ss_pred H
Q ss_conf 4
Q 002472 333 S 333 (918)
Q Consensus 333 ~ 333 (918)
.
T Consensus 636 ~ 636 (876)
T 4ecn_A 636 N 636 (876)
T ss_dssp S
T ss_pred H
T ss_conf 4
No 7
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B*
Probab=1.00 E-value=1 Score=202.15 Aligned_cols=199 Identities=19% Similarity=0.255 Sum_probs=130.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87614998419970077899999999985099975343246522758999999983799998999999985100158989
Q 002472 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPF 616 (918)
Q Consensus 537 ~~~~~iL~ldGGG~rG~~~~~iL~~Le~~~~~~~~~~fD~i~GtS~Gaiia~~l~~~~~s~~~~~~~y~~~~~~iF~~~~ 616 (918)
.++...|+|+|||+||++++|+|++|++. | +...||+|+|||+|||+|++++.+ ++.+++.++|..+...-|-+..
T Consensus 125 ~~p~iaLVLsGGGaRG~~hiGVLkaLeE~-G--i~p~fD~IaGTSAGAIiAAllAaG-~s~~el~~l~~~ld~~~f~D~~ 200 (711)
T 3tu3_B 125 RPPLTSLVLSGGGAKGAAYPGAMLALEEK-G--MLDGIRSMSGSSAGGITAALLASG-MSPAAFKTLSDKMDLISLLDSS 200 (711)
T ss_dssp CCCEEEEEECCCGGGGGGHHHHHHHHHHT-T--CSTTCCEEEEETTHHHHHHHHHTT-CCHHHHHHHHHTCCHHHHHHHS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHC-C--CCCCCCEEEEECHHHHHHHHHHCC-CCHHHHHHHHHHCCHHHHCCCC
T ss_conf 88836999768589999999999999976-9--987746797665879999999809-9899999999858998703871
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---C----------------------------------------CCCHHH
Q ss_conf 998214568887788864035640588605---7----------------------------------------888789
Q 002472 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHG---S----------------------------------------KHSADQ 653 (918)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------------------------------~~~~~~ 653 (918)
... ..|...+ ++.++..+...+.+ . .++...
T Consensus 201 ~~~---~g~lq~l---~~efG~~~~~~lpg~~g~a~rlLl~l~P~~Qs~g~pl~dllr~~~r~slL~~ia~~P~~~~~~~ 274 (711)
T 3tu3_B 201 NKK---LKLFQHI---SSEIGASLKKGLGNKIGGFSELLLNVLPRIDSRAEPLERLLRDETRKAVLGQIATHPEVARQPT 274 (711)
T ss_dssp CCC---CHHHHHT---TC---------------CHHHHHHHHGGGCCCTTSHHHHHHHHHHHHHHHHHHHHCHHHHTSHH
T ss_pred HHH---HHHHHHH---HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 114---4568999---9987688741577303556776653042112344319999998887778888750842246333
Q ss_pred HHHHHHHHHCCCCCCCHHCCCC------CCCCEEEEEEEEECCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999822988872010124------89997999974202589953--473057899999998764567987311389
Q 002472 654 FERLLKEMCADEDGDLLIESSV------KNIPKVFTVSTLVNVMPAQP--FIFRNYQYPAGTPEVPFSISENSGITVLGS 725 (918)
Q Consensus 654 le~~l~~~~~~~~~~~~~~~~~------~~~~~~~v~~t~~~~~~~~~--~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~ 725 (918)
+..++.+.... +..+|.+.. ...+.+.|++| +..++++ ++|...+.+
T Consensus 275 l~~Ll~rL~~~--~~ITF~dL~~L~~~~P~~k~L~IvAT--NL~TGkpelvyFs~~~tP--------------------- 329 (711)
T 3tu3_B 275 VAAIASRLQSG--SGVTFGDLDRLSAYIPQIKTLNITGT--AMFEGRPQLVVFNASHTP--------------------- 329 (711)
T ss_dssp HHHHHHHHHTT--CCCBHHHHHHHHTTCTTSCEEEEEEE--EEETTEEEEEEESTTTCT---------------------
T ss_pred HHHHHHHHCCC--CCCCHHHHHHHHHCCCCCCEEEEEEE--ECCCCCCCEEEECCCCCC---------------------
T ss_conf 78999983578--89889999998614888864999989--889997022883788899---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---------EEEECCCCCCCCHHHHHHH
Q ss_conf 98787445544334588851377998750368989877448982---------1552420248908999999
Q 002472 726 PTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVF---------RWQDGAIVANNPTIFAIRE 788 (918)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~a~rASsAaP~~F~p~~~~~~---------~~vDGGi~~NnP~~~al~e 788 (918)
++.||+|+|||||+|+||+|+.+++. .|+|||+.+|+|+..++..
T Consensus 330 ------------------d~~I~dAVRASsSlP~vF~PV~I~G~~f~~~~e~~~YVDGGIsdNiPI~~l~d~ 383 (711)
T 3tu3_B 330 ------------------DLEVAQAAHISGSFPGVFQKVSLSDQPYQAGVEWTEFQDGGVMINVPVPEMIDK 383 (711)
T ss_dssp ------------------TSBHHHHHHHHHHCC----------------------------CCCCGGGGSCC
T ss_pred ------------------CCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCHHHHHHC
T ss_conf ------------------852999999982661357777989823455566766861686777689999857
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=201.69 Aligned_cols=201 Identities=19% Similarity=0.142 Sum_probs=104.4
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 00799996589922687897686222-489987899287999999986521---36897865897337778656811589
Q 002472 120 VVKRREPLRAVVLTKGVGSGHLSDGI-GVLTRLMRSDLSTSGPGNNMGSGF---CDHWKTVTAVSLCGLGLSALPVDLTR 195 (918)
Q Consensus 120 ~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~lp~~l~~ 195 (918)
.+..+++|+.|++++|.+.+..|..+ .++++|++|++++|. +.+..+.. +..+++|++|++++|.++.... +..
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 198 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSR 198 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTT
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC-CCC
T ss_conf 872788999898968826774797785638899989897983-588587155664358988989897880346578-454
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99876881548878888510068757555560036464-24400139999767886058888983244699998799910
Q 002472 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLF 274 (918)
Q Consensus 196 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~l~ 274 (918)
+++|++|++++|.+...++.+..+++|++|++++|.++ .+|..+.++++|+.|++++|.+.+..+.. .+++|+.|+++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~ 277 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLA 277 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECC
T ss_conf 78689898928827887711126999998979488587816577744888898989888665716724-36878989791
Q ss_pred CCCCC-CCC-CCCC-CCCCCEEECCCCCCCC--CCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89899-976-7478-8887689711788999--967201345510357763466532000
Q 002472 275 GNPLE-FLP-EILP-LLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLS 329 (918)
Q Consensus 275 ~N~l~-~~~-~l~~-l~~L~~L~L~~N~i~~--~~~l~~l~~~~~l~~l~~l~l~~n~l~ 329 (918)
+|.+. .+| .+.. +++|+.|++++|.+++ +..+. .+++++.+++..|.+.
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG------SCSLLESLALSSNNFS 331 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG------GCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHH------CCCCCCEEECCCCCCC
T ss_conf 78557725888884468688998968967784236775------5877667789788525
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=198.00 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=107.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCC------CCCCEEECCCCCCCCCCC--CC
Q ss_conf 999965899226878976862224899878992879999999-865213689------786589733777865681--15
Q 002472 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHW------KTVTAVSLCGLGLSALPV--DL 193 (918)
Q Consensus 123 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l------~~L~~L~Ls~n~l~~lp~--~l 193 (918)
.+++|+.|++++|.+.+.+|..+.++++|+.|++++|..+.+ .+|..+..+ ++|++|++++|.++.+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 46878889804885776283888349997889784798876653357887543046578888898979937766765554
Q ss_pred CCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCC
Q ss_conf 89998768815488788-8851006875755556003646424400139999-7678860588889832446999--987
Q 002472 194 TRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVG-LVELSLEHNRLVRPLLDFRAMA--ELK 269 (918)
Q Consensus 194 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~-L~~L~L~~n~l~~~~~~l~~l~--~L~ 269 (918)
..+++|++|++++|.++ .+| .+..+++|+.|++++|.++.+|..+..+++ |+.|++++|.++..+..+..+. +|+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred CCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCC
T ss_conf 257888989690880705166-6478898898989899403033756510236868985298275446655333457668
Q ss_pred EEEEECCCCCC-CC-CCC-------CCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 99910898999-76-747-------88887689711788999967201345510357763466532000223
Q 002472 270 ILRLFGNPLEF-LP-EIL-------PLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFF 332 (918)
Q Consensus 270 ~L~l~~N~l~~-~~-~l~-------~l~~L~~L~L~~N~i~~~~~l~~l~~~~~l~~l~~l~l~~n~l~~~~ 332 (918)
.|++++|.+.. +| .+. .+.+|+.|++++|.++..+.- .+..+++++.++++.|.+...+
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSEEECCSSCCSBCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHH----HHCCCCCCCEEECCCCCCCCCC
T ss_conf 8977488578865244200220112589888897727966867878----8715898898989799788739
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=195.17 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=184.8
Q ss_pred CCCCEEEEECCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCC
Q ss_conf 996589922687897--6862224899878992879-99999986521368978658973377786-5681158999876
Q 002472 125 EPLRAVVLTKGVGSG--HLSDGIGVLTRLMRSDLST-SGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLE 200 (918)
Q Consensus 125 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 200 (918)
.+++.|++++|.+.+ .+|..+.++++|+.|++++ |. +.+.+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred CEEEEEECCCCCCCCCCCCCHHHHCCCCCCEEECCCCCC-CCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHCCCCCC
T ss_conf 648899888997468765696574788888632788886-3665896684678999798968846774897883789889
Q ss_pred EEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC-CCCHHCCCCC-CCCEEEEECCCCCCCC-CCCCCCCCCCEEEEECC
Q ss_conf 8815488788-88510068757555560036464-2440013999-9767886058888983-24469999879991089
Q 002472 201 KLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECV-GLVELSLEHNRLVRPL-LDFRAMAELKILRLFGN 276 (918)
Q Consensus 201 ~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~~~~-~~l~~l~~L~~L~l~~N 276 (918)
+|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+.+.. ..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCHHHHCCC-CCEEECCCC
T ss_conf 8969778357727867845988786889488445818778863453185998859862152776886881-368979178
Q ss_pred CCC-CCC-CCCCCCCCCEEECCCCCCCCC-CCCCHHHHHHCCCCCCCCCCCCCCCCHHH-HHHHHCCCCCCCHHHHHHHH
Q ss_conf 899-976-747888876897117889999-67201345510357763466532000223-44542047998412688875
Q 002472 277 PLE-FLP-EILPLLKLRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSAFF-SLIFRFSSCHHPLLASALAK 352 (918)
Q Consensus 277 ~l~-~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~~~~l~~l~~l~l~~n~l~~~~-~~~~~l~~l~~~~l~~~L~~ 352 (918)
.++ .++ .+..+++|+.|++++|.+++. +.+. .+++++.++++.|.+.+.. ..+..+.+++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~--------- 272 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS--------- 272 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCC------CCTTCCEEECCSSCCEECCCGGGGGCTTCCE---------
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCEEEECCCCC------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCE---------
T ss_conf 4658377777467888789897772142258634------4687898989288216848757866847898---------
Q ss_pred HHCCCCCCE--EECCCCCCCCCCCEEECCCCCCHH
Q ss_conf 420578841--102556544752189876891036
Q 002472 353 IMQDQENRV--VVGKDENAVRQLISMISSDNRHVV 385 (918)
Q Consensus 353 l~~l~~n~~--~i~~~~~~L~~L~~L~ls~n~~v~ 385 (918)
.++++|.+ .+|. .+.++.|..+.+++|+.++
T Consensus 273 -L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 273 -LNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -EECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred -EECCCCCCCCCCCC-CCCCCCCCHHHHCCCCCCC
T ss_conf -98868833051798-8532545867756899766
Done!