Query 002474
Match_columns 918
No_of_seqs 399 out of 3495
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 15:49:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002474.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1196-1200//hhsearch_pdb/002474hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8c_A Periplasmic PH-dependen 1.0 1 1 438.2 48.2 382 33-457 10-421 (436)
2 3pv2_A DEGQ; trypsin fold, PDZ 1.0 1 1 436.9 36.2 383 35-456 18-443 (451)
3 4fln_A Protease DO-like 2, chl 1.0 1 1 428.2 44.4 376 43-453 44-470 (539)
4 1ky9_A Protease DO, DEGP, HTRA 1.0 1 1 419.3 24.2 375 36-456 13-440 (448)
5 3stj_A Protease DEGQ; serine p 1.0 1 1 367.1 32.4 302 35-371 12-338 (345)
6 1te0_A Protease DEGS; two doma 1.0 1 1 338.0 30.4 298 33-367 6-315 (318)
7 3num_A Serine protease HTRA1; 1.0 1 1 332.8 19.6 307 33-368 11-323 (332)
8 1lcy_A HTRA2 serine protease; 1.0 1 1 331.2 25.9 308 33-365 12-322 (325)
9 3qo6_A Protease DO-like 1, chl 1.0 1 1 329.4 26.1 301 32-369 13-335 (348)
10 1y8t_A Hypothetical protein RV 1.0 1 1 316.3 30.2 288 35-368 5-315 (324)
No 1
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=1.00 E-value=1 Score=438.19 Aligned_cols=382 Identities=19% Similarity=0.317 Sum_probs=313.9
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEEEEEC------------CCC------CCCCCCEEEEEEEECCCCEEEECCCCCCCCCC
Q ss_conf 673269999988499509999875303------------697------89987059999996899499985855699980
Q 002474 33 ATADDWRKALNKVVPAVVVLRTTACRA------------FDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGPV 94 (918)
Q Consensus 33 ~~~~~~~~~iekv~~SVV~I~~~~~~~------------fd~------~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~ 94 (918)
+...+|..+++++.+|||+|.+..... |.. .....+.||||+|++++||||||+||+. +..
T Consensus 10 ~~~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~-~a~ 88 (436)
T 4a8c_A 10 APLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QAQ 88 (436)
T ss_pred CCCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC-CCC
T ss_conf 6887899999863794799999875125666760556641555544557767547899999899898998879919-998
Q ss_pred EEEEEECCCEEEEEEEEEECCCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECC
Q ss_conf 7999964990996999983289928999987-998433445677889856689998999944999974189869985358
Q 002474 95 VAEAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDR 173 (918)
Q Consensus 95 ~i~v~f~dg~~~~a~vv~~Dp~~DlAiLkvd-p~~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r 173 (918)
.+.+.+.+++.+++++++.|+.+|+|+||++ +..++++.+.. ++.+++|++++++|||++...+++.|+++.+++
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~~~~~l~~~~l~~----s~~~~~G~~v~aiG~P~g~~~~vt~G~vs~~~r 164 (436)
T 4a8c_A 89 KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR 164 (436)
T ss_pred EEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEECCC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECC
T ss_conf 8999957998999999997488898999934778895576167----354777988999976788786277779964224
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98888888865666047999315789887860772555099943466788----87101354366999999999369776
Q 002474 174 DAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFFLPLERVVRALRFLQERRDCN 249 (918)
Q Consensus 174 ~~p~y~~~~~~dfn~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~~----~~~~faLPi~~i~~~L~~l~~g~~~~ 249 (918)
.. +....|. .+||+++.+++|+|||||+|.+|+||||+++.... .+.+|++|++.+++++++|.+++
T Consensus 165 ~~--~~~~~~~----~~iq~da~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g--- 235 (436)
T 4a8c_A 165 SG--LNLEGLE----NFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG--- 235 (436)
T ss_pred CC--CCCCCCC----CEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEHHHHHHHHHHHHHCC---
T ss_conf 65--5777746----87999275289887276027897799997110168897235788886688999999987445---
Q ss_pred CCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEE
Q ss_conf 5554200137886473999839578887056046899887249998877259967458990113-998998999999987
Q 002474 250 IHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEV 328 (918)
Q Consensus 250 ~~~~~~~~v~rg~Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~ 328 (918)
.+.|+|||+.++..+.+.++.||++ ...|++| ..|.++|||++ ||+.||+|++|||+.
T Consensus 236 -------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GD~I~~vnG~~ 294 (436)
T 4a8c_A 236 -------EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNGKP 294 (436)
T ss_pred -------CCCCCCCCEEECCCCHHHHHHHCCC-------------CCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEE
T ss_conf -------4522557557525688999970999-------------8862699-997899958878999998999989999
Q ss_pred ECCHHHHHHHHH-CCCCCEEEEEEEECCEEEEEEEEEECCCCCCCC---CEEEECCEEECCCCHHHHCCCCCCCCCEEEE
Q ss_conf 168777999986-059982999999889577999996127788887---3023216030353254320157888818997
Q 002474 329 ITQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHSITPD---YFLEVSGAVIHPLSYQQARNFRFPCGLVYVA 404 (918)
Q Consensus 329 I~s~~~l~~~L~-~~~G~~I~l~V~R~G~~~~v~i~l~~l~~~tp~---~~v~~~G~~~~~ls~q~a~~~gl~~~GV~Vs 404 (918)
+.+|.++...+. ..+|+.++++|.|+|+.+++++++..+...... ..+.+.|..+.+... .-...|++|.
T Consensus 295 v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~------~~~~~gv~V~ 368 (436)
T 4a8c_A 295 LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQL------KDGGKGIKID 368 (436)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC------CCCCCCEEEE
T ss_conf 8899999999972599988999999899999999997777765433221456723552465456------6788877999
Q ss_pred C--CCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 5--8995678599999799997992339998999999854999747799953266
Q 002474 405 E--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYTD 457 (918)
Q Consensus 405 ~--pGspA~~AGLk~GDiI~sVNg~pv~~l~efv~vik~i~~g~rV~i~~~~~~d 457 (918)
+ ++|||+++||+.||+|++|||+++.++++|.++++..+ ..+.|++.|-+.
T Consensus 369 ~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~l~~~~--~~v~l~v~R~g~ 421 (436)
T 4a8c_A 369 EVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP--AIIALQIVRGNE 421 (436)
T ss_pred EECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCC--CEEEEEEEECCE
T ss_conf 96799979985999999999989998789999999997289--839999998999
No 2
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=1.00 E-value=1 Score=436.94 Aligned_cols=383 Identities=20% Similarity=0.319 Sum_probs=315.2
Q ss_pred CHHHHHHHHHHCCCEEEEEEEEEEC-----------------CCCC---------CCCCCEEEEEEEECCCCEEEECCCC
Q ss_conf 3269999988499509999875303-----------------6978---------9987059999996899499985855
Q 002474 35 ADDWRKALNKVVPAVVVLRTTACRA-----------------FDTE---------AAGASYATGFVVDKRRGIILTNRHV 88 (918)
Q Consensus 35 ~~~~~~~iekv~~SVV~I~~~~~~~-----------------fd~~---------~~~~~~GTGfVVd~~~G~ILTnrHV 88 (918)
..+|..+++++.||||.|.+..... |-+. ....+.||||+|++++||||||+||
T Consensus 18 ~~~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HV 97 (451)
T 3pv2_A 18 MPSMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHV 97 (451)
T ss_dssp CCCSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHH
T ss_pred CCCHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHH
T ss_conf 97889999974894799999986325677753446656678643665666555676443247999998999999978699
Q ss_pred CCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-----CEE
Q ss_conf 699980799996499099699998328992899998799843344567788985668999899994499997-----418
Q 002474 89 VKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-----VSI 163 (918)
Q Consensus 89 V~~~~~~i~v~f~dg~~~~a~vv~~Dp~~DlAiLkvdp~~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~-----~si 163 (918)
|. +...+.+.+.+++.++|++++.|+.+|+|+||++++.++++.+.. ++.+++|++|+++|||++.. .++
T Consensus 98 v~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~l~~~~l~~----s~~~~~G~~V~aiG~P~G~~~~~~~~~v 172 (451)
T 3pv2_A 98 IR-NASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGD----SDKLEVGDFVVAIGNPFGLNSFGNSQSA 172 (451)
T ss_dssp HT-TEEEEEEECTTSCEEECEEEEEETTTTEEEEECCCSSCCCCCBCC----GGGCCTTCEEEEEECCCCC-----CCEE
T ss_pred HC-CCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 39-998899997699799999992475774799997686785567457----2448879989999899875665667735
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCC----CCCCCCCCCHHHHHHHH
Q ss_conf 98699853589888888886566604799931578988786077255509994346678----88710135436699999
Q 002474 164 LAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRAL 239 (918)
Q Consensus 164 ~~G~Is~l~r~~p~y~~~~~~dfn~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~----~~~~~faLPi~~i~~~L 239 (918)
+.|+++.+.+.. +....|.+ +||+++.+++|+|||||+|.+|+||||+++... ..+.+|+||++.+++++
T Consensus 173 t~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGPl~n~~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~ 246 (451)
T 3pv2_A 173 TFGIVSALKRSD--LNIEGVEN----FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVA 246 (451)
T ss_dssp EEEEEEEEC------------C----CEEESSCCCGGGTTSEEEETTCCEEEEEECCC------CCCEEEEEHHHHHHHH
T ss_pred EEEEEEECCCCC--CCCCCCCE----EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEHHHHHHHHH
T ss_conf 679994313355--57777413----899844527998748251889749999968663788853244440068899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCEEEEEECCCCCCCC-CCCC
Q ss_conf 999936977655542001378864739998395788870560468998872499988-77259967458990113-9989
Q 002474 240 RFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGE-TGLLVVDSVVPGGPAHL-RLEP 317 (918)
Q Consensus 240 ~~l~~g~~~~~~~~~~~~v~rg~Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~-~G~lVV~~V~p~spA~~-GLq~ 317 (918)
++|.+++ .+.|+|||++++..+.+.++.+|++ .. .|++| ..|.++|||++ ||+.
T Consensus 247 ~~l~~~g----------~v~r~~lGv~~~~~~~~~a~~~gl~-------------~~~~G~~V-~~V~~~spA~~aGL~~ 302 (451)
T 3pv2_A 247 QQIIKFG----------SIHRGLMGIFVQHLTPELAQAMGYP-------------EDFQGALV-SQVNPNSPAELAGLKA 302 (451)
T ss_dssp HHHHHHS----------SCCCCBCCEEEEECCHHHHHHTTSC-------------TTCCCEEE-EEECTTSHHHHHTCCT
T ss_pred HHHHHCC----------CCCCCCCCCEEEECCHHHHHHCCCC-------------CCCCEEEE-EECCCCCHHHHCCCCC
T ss_conf 9998629----------7645666616786529899862998-------------67850899-9558998688759999
Q ss_pred CCEEEEECCEEECCHHHHHHHHH-CCCCCEEEEEEEECCEEEEEEEEEECCCCCCC---CCEEEECCEEECCCCHHHHCC
Q ss_conf 98999999987168777999986-05998299999988957799999612778888---730232160303532543201
Q 002474 318 GDVLVRVNGEVITQFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHSITP---DYFLEVSGAVIHPLSYQQARN 393 (918)
Q Consensus 318 GDiIlsING~~I~s~~~l~~~L~-~~~G~~I~l~V~R~G~~~~v~i~l~~l~~~tp---~~~v~~~G~~~~~ls~q~a~~ 393 (918)
||+|++|||+++.+|.++...+. ..+|+.++++|.|+|++.++++++..+..... .......|+.+.++.+.....
T Consensus 303 GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 382 (451)
T 3pv2_A 303 GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPH 382 (451)
T ss_dssp TCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEECTTS
T ss_pred CCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 99999889999278999999997158998899999999999999999755776544332235453431015488567412
Q ss_pred CCCCCCCEEEEC--CCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 578888189975--899567859999979999799233999899999985499974779995326
Q 002474 394 FRFPCGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (918)
Q Consensus 394 ~gl~~~GV~Vs~--pGspA~~AGLk~GDiI~sVNg~pv~~l~efv~vik~i~~g~rV~i~~~~~~ 456 (918)
....|++|.+ ++|||+++||+.||+|++|||+++.++++|.++++. .++.+.|++.|-+
T Consensus 383 --~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~~~~~~~l~~--~~~~v~l~v~R~g 443 (451)
T 3pv2_A 383 --GNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE--KKKELLVQVLRGP 443 (451)
T ss_dssp --CEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHTTS--SCSCEEEEEEETT
T ss_pred --CCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCCEEEEEEEECC
T ss_conf --688840899889999799849999999999899987899999999863--7975999999899
No 3
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=428.24 Aligned_cols=376 Identities=18% Similarity=0.209 Sum_probs=308.9
Q ss_pred HHHCCCEEEEEEEEEE-----CCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEEC-CCEEEEEEEEEECCC
Q ss_conf 8849950999987530-----3697899870599999968994999858556999807999964-990996999983289
Q 002474 43 NKVVPAVVVLRTTACR-----AFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFV-NREEIPVYPIYRDPV 116 (918)
Q Consensus 43 ekv~~SVV~I~~~~~~-----~fd~~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i~v~f~-dg~~~~a~vv~~Dp~ 116 (918)
+...+|||.|.+.... +|.......+.||||||+ +|+||||+|||. +...+.+.+. |+++++|++++.|+.
T Consensus 44 ~~~~~sVV~I~~~~~~~~~~~Pw~~~~~~~s~GSGfiI~--dG~IlTN~HVV~-~a~~i~V~~~~dg~~~~A~vv~~D~~ 120 (539)
T 4fln_A 44 ASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIG--DGKLLTNAHCVE-HDTQVKVKRRGDDRKYVAKVLVRGVD 120 (539)
T ss_dssp HHHHTTEEEEEEEECCBCSSSTTSBCCCEEEEEEEEEEE--TTEEEECGGGGT-TEEEEEEECTTCCCCEEEEEEEEETT
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 114787699997764778778541478660679999997--999997868828-99869999926997999999997799
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 92899998799843344567788985668999899994499997-41898699853589888888886566604799931
Q 002474 117 HDFGFFRYDPSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEK-VSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAS 195 (918)
Q Consensus 117 ~DlAiLkvdp~~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~-~si~~G~Is~l~r~~p~y~~~~~~dfn~~~Iq~da 195 (918)
+|+|+||++...+.. .+.++.++ +.+++|++|+++|||++.. .+++.|+|+++++.....+ .....+||+|+
T Consensus 121 ~DLAvLkv~~~~~~~-~~~pl~~g-~~~~vGd~V~aiG~P~g~~~~tvT~GIVSa~~r~~~~~~-----~~~~~~IQtDA 193 (539)
T 4fln_A 121 CDIALLSVESEDFWK-GAEPLRLG-HLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHG-----SSDLLGIQIDA 193 (539)
T ss_dssp TTEEEEEECCSSSST-TCCCCCBC-CCCCTTCEEEEEECCSSSCCCEEEEEEEEEEEEEECTTS-----CCEEEEEEESS
T ss_pred CCEEEEEEECCCCCC-CCCEEECC-CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCC-----CCCEEEEEEEE
T ss_conf 888999980776776-78454258-867679969999868999987678479875644445788-----74156999976
Q ss_pred CCCCCCCCCCEECCCCEEEEECCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCEEEEEC-
Q ss_conf 578988786077255509994346678---887101354366999999999369776555420013-788647399983-
Q 002474 196 GTKGGSSGSPVIDWQGRAVALNAGSKS---SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSI-PRGTLQVTFVHK- 270 (918)
Q Consensus 196 ~~~~G~SGGPVin~dG~VVGI~~~~~~---~~~~~faLPi~~i~~~L~~l~~g~~~~~~~~~~~~v-~rg~Lgv~~~~~- 270 (918)
++++|+|||||||.+|+||||+++... ..+.+|+||++.+++++++|.+.+ .+ .|+|||+.++..
T Consensus 194 aInpGnSGGPLvn~~GeVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~G----------~~~~r~~LGv~~~~~~ 263 (539)
T 4fln_A 194 AINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNG----------KYTGYPCLGVLLQKLE 263 (539)
T ss_dssp CCCTTTTTSEEECSSSCEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTTT----------SCCCCCBCCEEEEECC
T ss_pred EECCCCCCCHHCCCCCCEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCC----------EEEEEEECCEEEEECC
T ss_conf 865998334400379968989988843788886300031999999999999769----------2785310356878647
Q ss_pred CHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCEEECCHHH----------HHHHH-
Q ss_conf 9578887056046899887249998877259967458990113998998999999987168777----------99998-
Q 002474 271 GFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHLRLEPGDVLVRVNGEVITQFLK----------LETLL- 339 (918)
Q Consensus 271 ~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~GLq~GDiIlsING~~I~s~~~----------l~~~L- 339 (918)
..+.++.+|++ ...|++| ..|.++|||+++|+.||+|++|||+.|.+..+ +..++
T Consensus 264 ~~~~~~~~~l~-------------~~~Gv~V-~~V~~~spA~~al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~ 329 (539)
T 4fln_A 264 NPALRECLKVP-------------TNEGVLV-RRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLIS 329 (539)
T ss_dssp CHHHHHHHTCS-------------SSBCEEE-EEECTTSGGGGTCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHH
T ss_pred CHHHHHHCCCC-------------CCCCEEE-ECCCCCCHHHHCCCCCCEEEEECCEEECCCCEECCCCCHHHHHHHHHH
T ss_conf 99999860799-------------7675044-000689958947667989997899996858720334301689999997
Q ss_pred HCCCCCEEEEEEEECCEEEEEEEEEECCCCCCC-------CCEEEECCEEECCCCHHHHCCCCCC---------------
Q ss_conf 605998299999988957799999612778888-------7302321603035325432015788---------------
Q 002474 340 DDGVDKNIELLIERGGISMTVNLVVQDLHSITP-------DYFLEVSGAVIHPLSYQQARNFRFP--------------- 397 (918)
Q Consensus 340 ~~~~G~~I~l~V~R~G~~~~v~i~l~~l~~~tp-------~~~v~~~G~~~~~ls~q~a~~~gl~--------------- 397 (918)
...+|++++++|.|+|+++++++++...+...+ ..+..++|+.|.+++.++++.++..
T Consensus 330 ~~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (539)
T 4fln_A 330 QKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVA 409 (539)
T ss_dssp TSCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHHHHHCCC
T ss_pred CCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEHHHHHHH
T ss_conf 07989879999998998999999973586555311246897411106638850899999742245667143310000010
Q ss_pred ----CCCEEEEC--CCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf ----88189975--899567859999979999799233999899999985499974779995
Q 002474 398 ----CGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYS 453 (918)
Q Consensus 398 ----~~GV~Vs~--pGspA~~AGLk~GDiI~sVNg~pv~~l~efv~vik~i~~g~rV~i~~~ 453 (918)
..||.++. +++++..+|++.||+|++|||+++.++++|.+++++.+ ++.+.+++.
T Consensus 410 ~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~l~~~l~~~k-~~~l~~~~~ 470 (539)
T 4fln_A 410 RFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCK-DKYLVFEFE 470 (539)
T ss_dssp SSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHHHHHHHHTCC-SSEEEEEET
T ss_pred CCCCCEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCC-CCEEEEEEC
T ss_conf 0379608999986588535543788999899489987699999999999748-975999978
No 4
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=1.00 E-value=1 Score=419.25 Aligned_cols=375 Identities=19% Similarity=0.339 Sum_probs=302.5
Q ss_pred HHHHHHHHHHCCCEEEEEEEEEE-------------CCCCCC----------------------------CCCCEEEEEE
Q ss_conf 26999998849950999987530-------------369789----------------------------9870599999
Q 002474 36 DDWRKALNKVVPAVVVLRTTACR-------------AFDTEA----------------------------AGASYATGFV 74 (918)
Q Consensus 36 ~~~~~~iekv~~SVV~I~~~~~~-------------~fd~~~----------------------------~~~~~GTGfV 74 (918)
.+|..+++++.+|||.|.+.... .|.... ...+.||||+
T Consensus 13 ~~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~i 92 (448)
T 1ky9_A 13 PSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVI 92 (448)
T ss_dssp CCSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 66899998728967999999875266776624556640244544333443333332334544444445663251799999
Q ss_pred EECCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9689949998585569998079999649909969999832899289999879-984334456778898566899989999
Q 002474 75 VDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVV 153 (918)
Q Consensus 75 Vd~~~G~ILTnrHVV~~~~~~i~v~f~dg~~~~a~vv~~Dp~~DlAiLkvdp-~~l~~~~l~~l~l~~~~l~vG~~V~vV 153 (918)
|++++||||||+||+. +...+.+.+.++++++|++++.|+.+|+|+||++. +.++++.+.. ++.+++|++|+++
T Consensus 93 i~~~~g~IlTn~HVv~-~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~~l~~----s~~~~~G~~V~ai 167 (448)
T 1ky9_A 93 IDADKGYVVTNNHVVD-NATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMAD----SDALRVGDYTVAI 167 (448)
T ss_dssp EETTTTEEEEEHHHHT-TEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTCEEEEE
T ss_pred EECCCCEEEECHHHHC-CCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEEEE
T ss_conf 9899899997758949-9987999978997999999997588998999966889982688446----0348889979999
Q ss_pred ECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCC----CCCCCC
Q ss_conf 4499997418986998535898888888865666047999315789887860772555099943466788----871013
Q 002474 154 GNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS----SASAFF 229 (918)
Q Consensus 154 G~p~g~~~si~~G~Is~l~r~~p~y~~~~~~dfn~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~~----~~~~fa 229 (918)
|||++...+++.|+++.+.|.. +....|.+ +||+++.+++|+||||++|.+|+||||++..... .+.+|+
T Consensus 168 G~P~g~~~tvt~Givs~~~r~~--~~~~~~~~----~iqtda~i~~GnSGGpl~n~~G~vvGI~~~~~~~~~~~~g~gfa 241 (448)
T 1ky9_A 168 GNPFGLGETVTSGIVSALGRSG--LNAENYEN----FIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFA 241 (448)
T ss_dssp ECTTSSSCEEEEEEEEEESSCC-------CCC----CEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCSSSEEE
T ss_pred ECCCCCCCEEEEEEEEECCCCC--CCCCCCCC----EEEECCCCCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCEEEE
T ss_conf 8888888718868995035565--57777567----79983787897778836877988999987753588874532425
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 54366999999999369776555420013788647399983957888705604689988724999887725996745899
Q 002474 230 LPLERVVRALRFLQERRDCNIHNWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGG 309 (918)
Q Consensus 230 LPi~~i~~~L~~l~~g~~~~~~~~~~~~v~rg~Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~s 309 (918)
||++.+++++++|.+++ .+.|+|||+.++..+.+.++.||++ ...|++| ..|.++|
T Consensus 242 IP~~~~~~~~~~l~~~g----------~v~~~~LGv~~~~~~~~~a~~lgl~-------------~~~G~~V-~~V~~gs 297 (448)
T 1ky9_A 242 IPSNMVKNLTSQMVEYG----------QVKRGELGIMGTELNSELAKAMKVD-------------AQRGAFV-SQVLPNS 297 (448)
T ss_dssp EEHHHHHHHHHHHHHHS----------SCCBCCCCCSCCCTTSHHHHTSCCT-------------TCCSEEC-CCCTTCS
T ss_pred EECCCCHHHHHHHHHHC----------CCCEECCCCCCCCCCHHHHHHHCCC-------------CCCCEEE-EEECCCC
T ss_conf 63032011499986421----------2410024432344459999971899-------------8884699-9945589
Q ss_pred CCCC-CCCCCCEEEEECCEEECCHHHHHHHHHC-CCCCEEEEEEEECCEEEEEEEEEECCCCCC---CCCEEEECCEEEC
Q ss_conf 0113-9989989999999871687779999860-599829999998895779999961277888---8730232160303
Q 002474 310 PAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSIT---PDYFLEVSGAVIH 384 (918)
Q Consensus 310 pA~~-GLq~GDiIlsING~~I~s~~~l~~~L~~-~~G~~I~l~V~R~G~~~~v~i~l~~l~~~t---p~~~v~~~G~~~~ 384 (918)
||++ ||++||+|++|||+.+.++.++...+.. .+|++++++|.|+|+.+++++++....... ........|+.+.
T Consensus 298 pA~~AGL~~GDvI~~inG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~~~~~~~G~~l~ 377 (448)
T 1ky9_A 298 SAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMS 377 (448)
T ss_dssp SSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC------------------------
T ss_pred HHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 78971899999999989999588799999998469998799999999999999999934777655544554310213762
Q ss_pred CCCHHHHCCCCCCCCCEEEEC--CCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 532543201578888189975--899567859999979999799233999899999985499974779995326
Q 002474 385 PLSYQQARNFRFPCGLVYVAE--PGYMLFRAGVPRHAIIKKFAGEEISRLEDLISVLSKLSRGARVPIEYSSYT 456 (918)
Q Consensus 385 ~ls~q~a~~~gl~~~GV~Vs~--pGspA~~AGLk~GDiI~sVNg~pv~~l~efv~vik~i~~g~rV~i~~~~~~ 456 (918)
++. +..|++|.+ ++|||+++||+.||+|++|||+++.++++|.++++..++ .+.|++.|-+
T Consensus 378 ~~~---------~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~~l~~~l~~~~~--~v~l~v~R~g 440 (448)
T 1ky9_A 378 NKG---------KDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPS--VLALNIQRGD 440 (448)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCC---------CCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCCCC--EEEEEEEECC
T ss_conf 157---------89759999956899799869999999999899987899999999975897--5999999899
No 5
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=367.07 Aligned_cols=302 Identities=21% Similarity=0.353 Sum_probs=258.3
Q ss_pred CHHHHHHHHHHCCCEEEEEEEEEEC------------CCC------CCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEE
Q ss_conf 3269999988499509999875303------------697------8998705999999689949998585569998079
Q 002474 35 ADDWRKALNKVVPAVVVLRTTACRA------------FDT------EAAGASYATGFVVDKRRGIILTNRHVVKPGPVVA 96 (918)
Q Consensus 35 ~~~~~~~iekv~~SVV~I~~~~~~~------------fd~------~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i 96 (918)
..+|..+++++.+|||.|.+..... |+. .....+.||||+|++++||||||+||+. +...+
T Consensus 12 ~~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~-~~~~i 90 (345)
T 3stj_A 12 LPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-QAQKI 90 (345)
T ss_dssp CCBSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT-TEEEE
T ss_pred CCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEECHHHHC-CCCEE
T ss_conf 87899999873895799999875225666751556642555654457666526999999899798997769949-99889
Q ss_pred EEEECCCEEEEEEEEEECCCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCC
Q ss_conf 99964990996999983289928999987-99843344567788985668999899994499997418986998535898
Q 002474 97 EAMFVNREEIPVYPIYRDPVHDFGFFRYD-PSAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDA 175 (918)
Q Consensus 97 ~v~f~dg~~~~a~vv~~Dp~~DlAiLkvd-p~~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~ 175 (918)
.+.+.+++.+++++++.|+.+|+|+||++ +..++++.+.. ++.+++|++++++|||.+...+++.|+++..++..
T Consensus 91 ~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~----s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~~~~~~ 166 (345)
T 3stj_A 91 SIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIAD----SDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG 166 (345)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCC----GGGCCTTBEEEEEECGGGCSCEEEEEEEEEEEECC
T ss_pred EEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCC
T ss_conf 99968996999999998699998999975667884476158----45578799999998788878717766995632466
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCC----CCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88888886566604799931578988786077255509994346678----88710135436699999999936977655
Q 002474 176 PHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALRFLQERRDCNIH 251 (918)
Q Consensus 176 p~y~~~~~~dfn~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~----~~~~~faLPi~~i~~~L~~l~~g~~~~~~ 251 (918)
+....+. .+|++++.+++|+|||||+|.+|+||||++.... ..+.+|+||++.+++++++|.+++
T Consensus 167 --~~~~~~~----~~iq~da~i~~GnSGGPLvn~~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g----- 235 (345)
T 3stj_A 167 --LNLEGLE----NFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG----- 235 (345)
T ss_dssp --SSSSSSC----CEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS-----
T ss_pred --CCCCCCC----CEEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCC-----
T ss_conf --5877736----77999566399867134448898899998410268777510578985289999999987514-----
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEEEC
Q ss_conf 54200137886473999839578887056046899887249998877259967458990113-99899899999998716
Q 002474 252 NWEAVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVIT 330 (918)
Q Consensus 252 ~~~~~~v~rg~Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~I~ 330 (918)
.+.|+|||+.++..+.+.++.+|++ ...|++| ..|.++|||++ ||++||+|++|||++|.
T Consensus 236 -----~v~~~~lGv~~~~~~~~~a~~~gl~-------------~~~G~~V-~~V~~~spA~~aGL~~GDvI~~ing~~v~ 296 (345)
T 3stj_A 236 -----EIKRGLLGIKGTEMSADIAKAFNLD-------------VQRGAFV-SEVLPGSGSAKAGVKAGDIITSLNGKPLN 296 (345)
T ss_dssp -----SCCCEECCEEEEECCHHHHHHTTCS-------------CCSSEEE-EEECTTSHHHHHTCCTTCEECEETTEECS
T ss_pred -----CCCCCCCCEEEEEECHHHHHHCCCC-------------CCCEEEE-EEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf -----4410002114675028788760788-------------8843799-98334895897699999999998999988
Q ss_pred CHHHHHHHHHC-CCCCEEEEEEEECCEEEEEEEEEECCCCCC
Q ss_conf 87779999860-599829999998895779999961277888
Q 002474 331 QFLKLETLLDD-GVDKNIELLIERGGISMTVNLVVQDLHSIT 371 (918)
Q Consensus 331 s~~~l~~~L~~-~~G~~I~l~V~R~G~~~~v~i~l~~l~~~t 371 (918)
++.++...+.. .+|++++++|.|+|+++++++++.......
T Consensus 297 ~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~ 338 (345)
T 3stj_A 297 SFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSL 338 (345)
T ss_dssp CHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC----
T ss_pred CHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCCCC
T ss_conf 999999999835999889999999999999999983267777
No 6
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=1.00 E-value=1 Score=338.01 Aligned_cols=298 Identities=18% Similarity=0.302 Sum_probs=251.5
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEEEEEC-CCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
Q ss_conf 673269999988499509999875303-6978998705999999689949998585569998079999649909969999
Q 002474 33 ATADDWRKALNKVVPAVVVLRTTACRA-FDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPI 111 (918)
Q Consensus 33 ~~~~~~~~~iekv~~SVV~I~~~~~~~-fd~~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i~v~f~dg~~~~a~vv 111 (918)
....++.++++++.+|||+|.+..... ++........||||+|++ +||||||+||+. +...+.+.+.+++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~ 83 (318)
T 1te0_A 6 ETPASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ-RGYIITNKHVIN-DADQIIVALQDGRVFEALLV 83 (318)
T ss_dssp CCCCCCHHHHHHHGGGEEEEEEEEECSSSSCCEEEEEEEEEEECST-TCEEEEEHHHHT-TCSEEEEECTTSCEEEEEEE
T ss_pred CCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEC-CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEE
T ss_conf 5663689999860896899996753677655656685279999908-989998878969-99879999479989989999
Q ss_pred EECCCCCEEEEEECCC-CCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 8328992899998799-8433445677889-8566899989999449999741898699853589888888886566604
Q 002474 112 YRDPVHDFGFFRYDPS-AIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTF 189 (918)
Q Consensus 112 ~~Dp~~DlAiLkvdp~-~l~~~~l~~l~l~-~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~p~y~~~~~~dfn~~ 189 (918)
++|+.+|+|+||++.. .+++ ++|. +..++.|++++++|||.+...+++.|+++...+... ....+ ..
T Consensus 84 ~~d~~~DlAllk~~~~~~~~~-----~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~--~~~~~----~~ 152 (318)
T 1te0_A 84 GSDSLTDLAVLIIKATGGLPT-----IPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGL--NPTGR----QN 152 (318)
T ss_dssp EEETTTTEEEEECCCSSCCCC-----CCCCTTCCCCTTCEEEEECCCSSSSCCEEEEEEEECCCCCC--CTTCS----CC
T ss_pred EECCCCEEEEEEEECCCCCCE-----EEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCC--CCCCC----CC
T ss_conf 707896289999927889865-----77407567888999999991898787087369831445543--78886----78
Q ss_pred EEEEEECCCCCCCCCCEECCCCEEEEECCCCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 799931578988786077255509994346678-------8871013543669999999993697765554200137886
Q 002474 190 YMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS-------SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGT 262 (918)
Q Consensus 190 ~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~-------~~~~~faLPi~~i~~~L~~l~~g~~~~~~~~~~~~v~rg~ 262 (918)
+|++++.+.+|+|||||+|.+|+||||++.+.. ..+.+|++|++.+++++++|.+++ .+.|+|
T Consensus 153 ~i~~d~~~~~G~SGGPl~~~~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g----------~~~~~~ 222 (318)
T 1te0_A 153 FLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG----------RVIRGY 222 (318)
T ss_dssp SEEESSCCCTTTTTSEEECTTCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS----------SCCCEE
T ss_pred EEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCC----------CCCCCC
T ss_conf 8999987789987372588998299998553036776666442488536999999999999749----------754564
Q ss_pred CCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEEECCHHHHHHHHHC
Q ss_conf 473999839578887056046899887249998877259967458990113-9989989999999871687779999860
Q 002474 263 LQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDD 341 (918)
Q Consensus 263 Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~I~s~~~l~~~L~~ 341 (918)
||+.++.++...++.||++ ...|++| ..|.++|||++ ||++||+|++|||+++.++.++...+..
T Consensus 223 lGi~~~~~~~~~~~~~g~~-------------~~~g~~V-~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~l~~~l~~ 288 (318)
T 1te0_A 223 IGIGGREIAPLHAQGGGID-------------QLQGIVV-NEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAE 288 (318)
T ss_dssp CCEEEEECSCCCSSSSCSS-------------SCCCEEE-EEECTTSTTTTTCCCTTCCEEEETTEECCCHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHCCCC-------------CCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHH
T ss_conf 2157653456678752678-------------8985799-9958999478789999999999899996899999999973
Q ss_pred -CCCCEEEEEEEECCEEEEEEEEEECC
Q ss_conf -59982999999889577999996127
Q 002474 342 -GVDKNIELLIERGGISMTVNLVVQDL 367 (918)
Q Consensus 342 -~~G~~I~l~V~R~G~~~~v~i~l~~l 367 (918)
.+|+.++++|.|+|+.+++++++...
T Consensus 289 ~~~g~~v~l~v~R~g~~~~~~v~~~~~ 315 (318)
T 1te0_A 289 IRPGSVIPVVVMRDDKQLTLQVTIQEY 315 (318)
T ss_dssp SCTTCEEEEEEESSSCEEEEEEECEEC
T ss_pred CCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 489887999999999999999997257
No 7
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=1.00 E-value=1 Score=332.85 Aligned_cols=307 Identities=16% Similarity=0.311 Sum_probs=251.7
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf 67326999998849950999987530369789987059999996899499985855699980799996499099699998
Q 002474 33 ATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIY 112 (918)
Q Consensus 33 ~~~~~~~~~iekv~~SVV~I~~~~~~~fd~~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i~v~f~dg~~~~a~vv~ 112 (918)
.....+.++++++.+|||+|.+..+.+|+......+.||||+|++ +|+||||+||+. +...+.+.+.++..+++++++
T Consensus 11 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~-~G~ILTaaHvv~-~~~~i~V~~~~g~~~~a~~~~ 88 (332)
T 3num_A 11 HKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSE-DGLIVTNAHVVT-NKHRVKVELKNGATYEAKIKD 88 (332)
T ss_dssp HHHCHHHHHHHHHGGGEEEEEEEEECTTSSCEEEEEEEEEEEEET-TTEEEECTTTCC-TTSEEEEEETTSCEEEEEEEE
T ss_pred CCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEC-CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEEE
T ss_conf 432259999987249299999885256677753103699999908-988997867808-998799997899999999998
Q ss_pred ECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 328992899998799-8433445677889856689998999944999974189869985358988888888656660479
Q 002474 113 RDPVHDFGFFRYDPS-AIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYM 191 (918)
Q Consensus 113 ~Dp~~DlAiLkvdp~-~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~p~y~~~~~~dfn~~~I 191 (918)
.|+.+|+|+|+++.. .++++.+.. +..++.|++++++|||.+...+++.|.++...+..... .+.+....++
T Consensus 89 ~d~~~DlAlL~l~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~~~~~~~~~---~~~~~~~~~i 161 (332)
T 3num_A 89 VDEKADIALIKIDHQGKLPVLLLGR----SSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL---GLRNSDMDYI 161 (332)
T ss_dssp EETTTTEEEEEECCSSCCCCCCBCC----TTSCCTTCEEEEECC-----CCEEEEEEEEC-----------------CCE
T ss_pred ECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCC---CCCCCCCCEE
T ss_conf 5688886999986788875256057----35478999799998788877655523897641455435---7577767789
Q ss_pred EEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99315789887860772555099943466788871013543669999999993----69776555420013788647399
Q 002474 192 QAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQE----RRDCNIHNWEAVSIPRGTLQVTF 267 (918)
Q Consensus 192 q~da~~~~G~SGGPVin~dG~VVGI~~~~~~~~~~~faLPi~~i~~~L~~l~~----g~~~~~~~~~~~~v~rg~Lgv~~ 267 (918)
++++.+.+|+|||||+|.+|++|||++.... .+.+|++|++.++++++++.+ ++. .+.|+|||+.+
T Consensus 162 ~~d~~i~~G~SGGPlv~~~G~vvGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~~~g~~---------~~~r~~lGi~~ 231 (332)
T 3num_A 162 QTDAIINYGNAGGPLVNLDGEVIGINTLKVT-AGISFAIPSDKIKKFLTESHDRQAKGKA---------ITKKKYIGIRM 231 (332)
T ss_dssp EESSCCCTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHHHHHCC---------------------------
T ss_pred EEECCCCCCCCHHHHHCCCCCEEEEEEEEEC-CCCEEEECHHHHHHHHHHHHHHHCCCCC---------CCCCCCCCEEE
T ss_conf 9989818977288903799819999946804-5626998899999999987554414764---------22343463588
Q ss_pred EECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEEECCHHHHHHHHHCCCCCE
Q ss_conf 9839578887056046899887249998877259967458990113-998998999999987168777999986059982
Q 002474 268 VHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKN 346 (918)
Q Consensus 268 ~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~I~s~~~l~~~L~~~~G~~ 346 (918)
...+.+.++.+++.. ..++....|++| ..|.++|||++ ||++||+|++|||+++.++.++...+.. ++.
T Consensus 232 ~~~~~~~~~~~~~~~-------~~~~~~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~--~~~ 301 (332)
T 3num_A 232 MSLTSSKAKELKDRH-------RDFPDVISGAYI-IEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKR--EST 301 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHC-------CCCCCCCCCEEE-EEECCCCCHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCE
T ss_conf 766888866665421-------145778886289-9961699768859999999999899998899999999827--984
Q ss_pred EEEEEEECCEEEEEEEEEECCC
Q ss_conf 9999998895779999961277
Q 002474 347 IELLIERGGISMTVNLVVQDLH 368 (918)
Q Consensus 347 I~l~V~R~G~~~~v~i~l~~l~ 368 (918)
++++|.|+|+++++++++..+.
T Consensus 302 v~l~v~R~g~~~~~~v~p~~~~ 323 (332)
T 3num_A 302 LNMVVRRGNEDIMITVIPEEID 323 (332)
T ss_dssp ----------------------
T ss_pred EEEEEEECCEEEEEEEEEEEEC
T ss_conf 9999998999999999872444
No 8
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=1.00 E-value=1 Score=331.23 Aligned_cols=308 Identities=21% Similarity=0.330 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf 67326999998849950999987530369789987059999996899499985855699980799996499099699998
Q 002474 33 ATADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIPVYPIY 112 (918)
Q Consensus 33 ~~~~~~~~~iekv~~SVV~I~~~~~~~fd~~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i~v~f~dg~~~~a~vv~ 112 (918)
.....+.++++++.+|||+|......+|++.....+.||||+|++ +||||||+||+. +...+.+.+.+++.+++++++
T Consensus 12 ~~~~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~gsG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~a~v~~ 89 (325)
T 1lcy_A 12 SQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAA-DGLIVTNAHVVA-DRRRVRVRLLSGDTYEAVVTA 89 (325)
T ss_dssp HHSCHHHHHHHHHGGGEEEEEEEEEETTTTEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCEEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEECHHHCC-CCCEEEEEECCCCEEEEEEEE
T ss_conf 111479999997079489999873476677754053079999918-998998978969-997799996899999999999
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEE
Q ss_conf 3289928999987998433445677889-856689998999944999974189869985358988888888656660479
Q 002474 113 RDPVHDFGFFRYDPSAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYM 191 (918)
Q Consensus 113 ~Dp~~DlAiLkvdp~~l~~~~l~~l~l~-~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~p~y~~~~~~dfn~~~I 191 (918)
+|+.+|+|+||++... .+.+++|. +..++.|++++++|||.+...+++.|+++...+....++ +.+....+|
T Consensus 90 ~d~~~DlAllkl~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~v~~G~vs~~~~~~~~~g---~~~~~~~~i 162 (325)
T 1lcy_A 90 VDPVADIATLRIQTKE----PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLG---LPQTNVEYI 162 (325)
T ss_dssp EETTTTEEEEECCCSS----CCCCCCBCCGGGCCTTCEEEECCCTTSSSSCCEEEEBCSCSCC------------CCCCE
T ss_pred ECCCCCEEEEEECCCC----CCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCC---CCCCCCCEE
T ss_conf 7898878999976789----885588236366899998999989998877587579812555654467---777777889
Q ss_pred EEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCEEEEEC
Q ss_conf 9931578988786077255509994346678887101354366999999999369776555420-013788647399983
Q 002474 192 QAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQERRDCNIHNWEA-VSIPRGTLQVTFVHK 270 (918)
Q Consensus 192 q~da~~~~G~SGGPVin~dG~VVGI~~~~~~~~~~~faLPi~~i~~~L~~l~~g~~~~~~~~~~-~~v~rg~Lgv~~~~~ 270 (918)
++++.+.+|+|||||+|.+|++|||++.+.. .+.+|++|++.++++++++.+.. .|.+ ..+.|+|||+....+
T Consensus 163 ~~d~~~~~G~SGGPl~~~~G~vVGI~s~~~~-~g~~~aip~~~i~~~l~~~~~~~-----~~~g~~~~~r~~lGv~~~~l 236 (325)
T 1lcy_A 163 QTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT-AGISFAIPSDRLREFLHRGEKKN-----SSSGISGSQRRYIGVMMLTL 236 (325)
T ss_dssp EESSCCSTTTTTSEEEETTSCEEEEEEEEEE-TTEEEEEEHHHHHHHTCC--------------------EECCEEEEEC
T ss_pred EECCCCCCCCCCCCEECCCCEEEEEEEEEEC-CCEEEEEEHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCEEEECC
T ss_conf 9968778998516289889979999847615-89048988999999999865404-----54333545433465176327
Q ss_pred CHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEEECCHHHHHHHHHCCCCCEEEE
Q ss_conf 9578887056046899887249998877259967458990113-998998999999987168777999986059982999
Q 002474 271 GFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFLKLETLLDDGVDKNIEL 349 (918)
Q Consensus 271 ~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~I~s~~~l~~~L~~~~G~~I~l 349 (918)
..+.++.+++... .+|+...|++| ..|.++|||++ ||++||+|++|||+++.++.++...+.. ++.+.+
T Consensus 237 ~~~~~~~~~l~~~-------~~~~~~~gv~V-~~V~~~spA~~aGl~~GDvI~~ing~~v~~~~~l~~~l~~--~~~v~l 306 (325)
T 1lcy_A 237 SPSILAELQLREP-------SFPDVQHGVLI-HKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT--QSQLAV 306 (325)
T ss_dssp CHHHHHHHTTSCT-------TSCCCSSCEEE-EEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHTT--CSSEEE
T ss_pred CHHHHHHHCCCCC-------CCCCCCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHC--CCEEEE
T ss_conf 8899986376544-------55568887599-9967689588789999999999899995899999999857--986999
Q ss_pred EEEECCEEEEEEEEEE
Q ss_conf 9998895779999961
Q 002474 350 LIERGGISMTVNLVVQ 365 (918)
Q Consensus 350 ~V~R~G~~~~v~i~l~ 365 (918)
+|.|+|+.+++++++.
T Consensus 307 ~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 307 QIRRGRETLTLYVTPE 322 (325)
T ss_dssp EEEETTEEEEEEECCE
T ss_pred EEEECCEEEEEEEEEE
T ss_conf 9998999999999995
No 9
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=329.41 Aligned_cols=301 Identities=24% Similarity=0.366 Sum_probs=246.2
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEEEEE--CCCCC--CCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 667326999998849950999987530--36978--99870599999968994999858556999807999964990996
Q 002474 32 VATADDWRKALNKVVPAVVVLRTTACR--AFDTE--AAGASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFVNREEIP 107 (918)
Q Consensus 32 ~~~~~~~~~~iekv~~SVV~I~~~~~~--~fd~~--~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~~~i~v~f~dg~~~~ 107 (918)
.+......++++++.+|||.|...... .|... ....+.||||+|++ +||||||+||+. +...+.+.+.++..++
T Consensus 13 ~~~e~~~~~~~~~~~~sVV~I~~~~~~~~~~~~~~~~~~~g~GSG~iI~~-~G~IlT~aHvv~-~~~~i~V~~~~g~~~~ 90 (348)
T 3qo6_A 13 QTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDK-QGHIVTNYHVIR-GASDLRVTLADQTTFD 90 (348)
T ss_dssp CHHHHHHHHHHHHHGGGEEEEEEEEEEECSSSCCEEEEEEEEEEEEEEET-TTEEEECHHHHT-TCSEEEEECTTSCEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC-CCEEEECHHHHC-CCCEEEEEECCCCEEE
T ss_conf 82305799999972797999997761356545554434683499999918-988998878908-9867999977997998
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 999983289928999987998433445677889-8566899989999449999741898699853589888888886566
Q 002474 108 VYPIYRDPVHDFGFFRYDPSAIQFLNYDEIPLA-PEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDF 186 (918)
Q Consensus 108 a~vv~~Dp~~DlAiLkvdp~~l~~~~l~~l~l~-~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~p~y~~~~~~df 186 (918)
+++++.|+.+|+|+||++... ..+.+++|. +..++.|++++++|||.+...+++.|.++..++....+. ....
T Consensus 91 a~~v~~d~~~DlAlLkl~~~~---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~~~~~~~~---~~~~ 164 (348)
T 3qo6_A 91 AKVVGFDQDKDVAVLRIDAPK---NKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAA---TGRP 164 (348)
T ss_dssp EEEEEEEGGGTEEEEECCCCG---GGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECCSS---SSSC
T ss_pred EEEEEECCCCCEEEEEECCCC---CCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCC---CCCC
T ss_conf 999998676787999975887---7741577067355788998999987898887675789976523102356---7874
Q ss_pred CEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCC----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 604799931578988786077255509994346678----8871013543669999999993697765554200137886
Q 002474 187 NTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKS----SSASAFFLPLERVVRALRFLQERRDCNIHNWEAVSIPRGT 262 (918)
Q Consensus 187 n~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~----~~~~~faLPi~~i~~~L~~l~~g~~~~~~~~~~~~v~rg~ 262 (918)
...++++++.+.+|+|||||+|.+|++|||++.... ..+.+|++|++.++++++++.+++ ++.|+|
T Consensus 165 ~~~~i~~da~i~~G~SGGPLvn~~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g----------~~~~~~ 234 (348)
T 3qo6_A 165 IQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFG----------KVTRPI 234 (348)
T ss_dssp EEEEEEECSCCCTTCTTCEEECTTSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHS----------SCCCEE
T ss_pred CCCEEEEECCCCCCCCHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCC----------CEEEEE
T ss_conf 2688999177199875789037998299999762268887463799999355479999998679----------255665
Q ss_pred CCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCC-----------CCEEEEECCEEEC
Q ss_conf 473999839578887056046899887249998877259967458990113-9989-----------9899999998716
Q 002474 263 LQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEP-----------GDVLVRVNGEVIT 330 (918)
Q Consensus 263 Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~-----------GDiIlsING~~I~ 330 (918)
||+++... ...+.+| ..|++| ..|.++|||++ ||++ ||+|++|||+++.
T Consensus 235 lGi~~~~~--~~~~~~~----------------~~Gv~V-~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~ 295 (348)
T 3qo6_A 235 LGIKFAPD--QSVEQLG----------------VSGVLV-LDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS 295 (348)
T ss_dssp CCCEECCT--TTTTTTT----------------CSSEEE-EECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCS
T ss_pred CCCEECCC--HHHHHCC----------------CCEEEE-EEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCEEEC
T ss_conf 47487041--3444237----------------760799-9866999589757864334444777889899998999918
Q ss_pred CHHHHHHHHH-CCCCCEEEEEEEECCEEEEEEEEEECCCC
Q ss_conf 8777999986-05998299999988957799999612778
Q 002474 331 QFLKLETLLD-DGVDKNIELLIERGGISMTVNLVVQDLHS 369 (918)
Q Consensus 331 s~~~l~~~L~-~~~G~~I~l~V~R~G~~~~v~i~l~~l~~ 369 (918)
+|.++...+. ..+|++++++|.|+|+.+++++++..+..
T Consensus 296 ~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~ 335 (348)
T 3qo6_A 296 NGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPD 335 (348)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEEECEECC-
T ss_pred CHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEECCCCC
T ss_conf 9999999997289969899999999999999999864898
No 10
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=1.00 E-value=1 Score=316.28 Aligned_cols=288 Identities=20% Similarity=0.308 Sum_probs=236.0
Q ss_pred CHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCC--------CEEEEEECCCEEE
Q ss_conf 32699999884995099998753036978998705999999689949998585569998--------0799996499099
Q 002474 35 ADDWRKALNKVVPAVVVLRTTACRAFDTEAAGASYATGFVVDKRRGIILTNRHVVKPGP--------VVAEAMFVNREEI 106 (918)
Q Consensus 35 ~~~~~~~iekv~~SVV~I~~~~~~~fd~~~~~~~~GTGfVVd~~~G~ILTnrHVV~~~~--------~~i~v~f~dg~~~ 106 (918)
..+++++++++.+|||+|.+... .....||||+|++ +||||||+||+.... ..+.+.+.+++.+
T Consensus 5 ~~~~~~~~~~~~~svV~I~~~~~-------~~~~~gsG~iI~~-~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~~~ 76 (324)
T 1y8t_A 5 PGSVEQVAAKVVPSVVMLETDLG-------RQSEEGSGIILSA-EGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTA 76 (324)
T ss_dssp -CCHHHHHHHHGGGEEEEEEEC-----------CEEEEEECCT-TSEEEEEHHHHTTCC--------CEEEEEETTCCEE
T ss_pred CCCHHHHHHHHCCCEEEEEEECC-------CCCCEEEEEEEEC-CCEEEECHHHCCCCCCCCCCCCCEEEEEEECCCCEE
T ss_conf 52599999872595899998716-------8880389999928-978998867708764444457860799996899999
Q ss_pred EEEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 69999832899289999879-98433445677889856689998999944999974189869985358988888888656
Q 002474 107 PVYPIYRDPVHDFGFFRYDP-SAIQFLNYDEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYND 185 (918)
Q Consensus 107 ~a~vv~~Dp~~DlAiLkvdp-~~l~~~~l~~l~l~~~~l~vG~~V~vVG~p~g~~~si~~G~Is~l~r~~p~y~~~~~~d 185 (918)
+++++++|+.+|+|+||++. ..++++.+.. +..++.|++++++|||.+...+++.|.++...+........++..
T Consensus 77 ~a~vv~~d~~~DlAllkl~~~~~~~~~~l~~----~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~~g~~~ 152 (324)
T 1y8t_A 77 PFTVVGADPTSDIAVVRVQGVSGLTPISLGS----SSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQN 152 (324)
T ss_dssp CEEEEECCTTTTEEEEEECSCCSCCCCEECC----STTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC-------C
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCEEEECC----CCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 9999974799887999987878984588037----466899998999984798787473139720566522466667644
Q ss_pred CCEEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCC-----------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 66047999315789887860772555099943466788-----------8710135436699999999936977655542
Q 002474 186 FNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSS-----------SASAFFLPLERVVRALRFLQERRDCNIHNWE 254 (918)
Q Consensus 186 fn~~~Iq~da~~~~G~SGGPVin~dG~VVGI~~~~~~~-----------~~~~faLPi~~i~~~L~~l~~g~~~~~~~~~ 254 (918)
....+|++++.+.+|+|||||+|.+|+||||++..... .+.+|+||++.+++++++|.+++
T Consensus 153 ~~~~~i~~d~~~~~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~~g-------- 224 (324)
T 1y8t_A 153 TVLDAIQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTG-------- 224 (324)
T ss_dssp CCEEEEEECSCCCTTCTTEEEECTTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHHS--------
T ss_pred CCCCEEEECCCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCC--------
T ss_conf 557879990878999964708998995999982210467654445556553488638999999999999769--------
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCEEEEECCEEECCHH
Q ss_conf 00137886473999839578887056046899887249998877259967458990113-99899899999998716877
Q 002474 255 AVSIPRGTLQVTFVHKGFDETRRLGLQSATEQMVRHASPPGETGLLVVDSVVPGGPAHL-RLEPGDVLVRVNGEVITQFL 333 (918)
Q Consensus 255 ~~~v~rg~Lgv~~~~~~~de~rrLGL~~e~~~~~~~~~p~~~~G~lVV~~V~p~spA~~-GLq~GDiIlsING~~I~s~~ 333 (918)
.+.|+|||+.+.... ...|++| ..|.++|||++ ||++||+|++|||+++.+|.
T Consensus 225 --~~~~~~lGi~~~~~~-----------------------~~~g~~V-~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~ 278 (324)
T 1y8t_A 225 --KASHASLGVQVTNDK-----------------------DTLGAKI-VEVVAGGAAANAGVPKGVVVTKVDDRPINSAD 278 (324)
T ss_dssp --CCCCEECCEEEESCS-----------------------SSSSEEE-EEECTTSTTTTTTCCTTCEEEEETTEECCSHH
T ss_pred --CCCCCCCCEEEEECC-----------------------CCCCEEE-EEECCCCHHHHCCCCCCCEEEEECCEECCCHH
T ss_conf --745663433752046-----------------------7886499-99789996998689999999998999978999
Q ss_pred HHHHHHHC-CCCCEEEEEEEE-CCEEEEEEEEEECCC
Q ss_conf 79999860-599829999998-895779999961277
Q 002474 334 KLETLLDD-GVDKNIELLIER-GGISMTVNLVVQDLH 368 (918)
Q Consensus 334 ~l~~~L~~-~~G~~I~l~V~R-~G~~~~v~i~l~~l~ 368 (918)
++...+.. .+|++++++|+| +|+.+++++++....
T Consensus 279 ~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~~ 315 (324)
T 1y8t_A 279 ALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKAE 315 (324)
T ss_dssp HHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC-
T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 9999997269989899999989997999999975578
Done!