Query 002475
Match_columns 917
No_of_seqs 449 out of 2881
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 00:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09496 trkA potassium transp 100.0 4.6E-36 9.9E-41 349.3 39.6 427 383-917 1-438 (453)
2 KOG1420 Ca2+-activated K+ chan 100.0 1.4E-37 2.9E-42 343.0 19.6 601 288-915 250-1064(1103)
3 PRK10537 voltage-gated potassi 100.0 2E-29 4.3E-34 285.9 21.3 233 291-549 140-382 (393)
4 PF06241 DUF1012: Protein of u 99.9 4E-25 8.6E-30 215.8 16.2 199 461-669 1-199 (206)
5 KOG3193 K+ channel subunit [In 99.9 1.4E-22 3.1E-27 223.6 24.8 319 285-616 184-546 (1087)
6 COG0569 TrkA K+ transport syst 99.9 6.2E-22 1.4E-26 209.8 19.1 214 383-621 1-216 (225)
7 PRK09496 trkA potassium transp 99.8 2E-19 4.2E-24 209.9 23.8 212 381-621 230-444 (453)
8 PRK10669 putative cation:proto 99.7 1E-15 2.3E-20 183.3 21.7 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.6 3E-14 6.6E-19 171.6 22.2 132 381-537 399-531 (601)
10 COG0569 TrkA K+ transport syst 99.6 5.1E-14 1.1E-18 149.5 19.6 208 645-916 2-210 (225)
11 PF02254 TrkA_N: TrkA-N domain 99.6 1.4E-14 3E-19 137.4 12.9 116 385-524 1-116 (116)
12 PRK03562 glutathione-regulated 99.6 1E-13 2.2E-18 167.5 22.1 133 381-537 399-531 (621)
13 PRK10537 voltage-gated potassi 99.4 3.5E-13 7.6E-18 153.7 12.2 143 642-842 239-382 (393)
14 PF06241 DUF1012: Protein of u 99.4 2.5E-12 5.5E-17 126.7 15.2 150 723-916 1-150 (206)
15 PF02254 TrkA_N: TrkA-N domain 99.3 9.9E-12 2.1E-16 117.8 12.2 115 646-816 1-115 (116)
16 PRK10669 putative cation:proto 99.2 7.6E-11 1.7E-15 141.6 13.7 141 641-837 415-555 (558)
17 PRK03659 glutathione-regulated 99.1 4.3E-10 9.4E-15 135.9 13.9 129 642-826 399-527 (601)
18 PRK03562 glutathione-regulated 99.0 1.5E-09 3.3E-14 131.5 14.0 116 643-814 400-515 (621)
19 PF07885 Ion_trans_2: Ion chan 99.0 4E-10 8.6E-15 99.9 6.0 72 295-366 3-78 (79)
20 COG1226 Kch Kef-type K+ transp 98.7 2.3E-07 5E-12 94.9 15.9 145 378-546 17-162 (212)
21 KOG3713 Voltage-gated K+ chann 98.7 9.4E-09 2E-13 116.6 5.1 81 289-369 347-434 (477)
22 KOG1545 Voltage-gated shaker-l 98.7 3.7E-09 8.1E-14 114.2 0.8 78 289-366 363-447 (507)
23 KOG1419 Voltage-gated K+ chann 98.5 8E-08 1.7E-12 109.3 3.2 79 293-371 238-328 (654)
24 PLN03192 Voltage-dependent pot 98.3 8.8E-07 1.9E-11 111.4 8.4 82 286-367 200-305 (823)
25 KOG4404 Tandem pore domain K+ 98.2 1.9E-06 4.2E-11 93.0 6.5 82 287-368 160-250 (350)
26 COG0490 Putative regulatory, l 98.2 3.3E-06 7.2E-11 83.5 7.6 65 554-621 88-153 (162)
27 KOG1420 Ca2+-activated K+ chan 98.1 4.4E-06 9.5E-11 94.9 7.9 234 641-916 355-618 (1103)
28 COG3400 Uncharacterized protei 98.1 5.4E-05 1.2E-09 82.6 14.4 211 383-621 2-215 (471)
29 COG1226 Kch Kef-type K+ transp 98.1 5.4E-05 1.2E-09 77.3 13.5 143 640-838 18-161 (212)
30 KOG3193 K+ channel subunit [In 97.9 0.00016 3.5E-09 82.1 13.3 232 641-915 285-544 (1087)
31 PF02080 TrkA_C: TrkA-C domain 97.8 7.3E-06 1.6E-10 70.7 2.0 62 555-620 3-65 (71)
32 KOG4390 Voltage-gated A-type K 97.8 1.9E-06 4.1E-11 94.2 -3.6 94 271-368 312-412 (632)
33 PF01007 IRK: Inward rectifier 97.6 0.00015 3.2E-09 81.6 7.4 105 283-391 32-161 (336)
34 PF03493 BK_channel_a: Calcium 97.3 0.00082 1.8E-08 62.7 7.7 70 514-585 8-101 (101)
35 KOG1418 Tandem pore domain K+ 97.1 0.0003 6.4E-09 81.0 3.8 62 311-372 113-175 (433)
36 KOG3684 Ca2+-activated K+ chan 97.1 0.008 1.7E-07 68.4 14.4 75 291-365 257-340 (489)
37 KOG0498 K+-channel ERG and rel 97.1 0.00038 8.2E-09 84.6 3.8 55 314-368 295-350 (727)
38 KOG1418 Tandem pore domain K+ 96.9 6.1E-05 1.3E-09 86.7 -4.3 68 291-358 220-296 (433)
39 KOG4404 Tandem pore domain K+ 96.9 0.001 2.3E-08 72.4 4.8 123 222-366 5-134 (350)
40 COG3273 Uncharacterized conser 96.8 0.0017 3.7E-08 65.6 5.2 64 555-621 122-186 (204)
41 KOG0501 K+-channel KCNQ [Inorg 96.2 0.0067 1.5E-07 70.2 5.7 55 314-368 424-479 (971)
42 PRK06719 precorrin-2 dehydroge 96.1 0.028 6.1E-07 56.7 9.2 83 381-490 12-94 (157)
43 PRK06719 precorrin-2 dehydroge 96.0 0.018 4E-07 58.0 7.4 83 642-755 12-94 (157)
44 COG0490 Putative regulatory, l 95.9 0.017 3.6E-07 57.7 6.5 49 862-916 99-147 (162)
45 KOG0499 Cyclic nucleotide-gate 95.7 0.01 2.2E-07 69.1 4.4 94 274-367 349-457 (815)
46 KOG0500 Cyclic nucleotide-gate 94.6 0.059 1.3E-06 62.1 6.2 54 315-368 185-238 (536)
47 PRK06718 precorrin-2 dehydroge 93.7 0.29 6.2E-06 51.5 8.8 84 381-489 9-93 (202)
48 COG3400 Uncharacterized protei 93.5 2 4.3E-05 48.1 15.0 203 644-916 2-209 (471)
49 TIGR03802 Asp_Ala_antiprt aspa 93.4 0.094 2E-06 63.5 5.4 64 554-621 220-284 (562)
50 PRK05326 potassium/proton anti 93.1 0.099 2.1E-06 63.4 5.0 62 555-621 418-479 (562)
51 PRK04972 putative transporter; 92.7 0.12 2.5E-06 62.6 4.7 64 554-621 304-367 (558)
52 TIGR03802 Asp_Ala_antiprt aspa 92.3 0.16 3.4E-06 61.7 5.0 64 554-621 304-372 (562)
53 PRK06718 precorrin-2 dehydroge 92.2 0.55 1.2E-05 49.4 8.5 72 642-732 9-80 (202)
54 TIGR01470 cysG_Nterm siroheme 92.2 0.5 1.1E-05 49.8 8.1 71 643-732 9-79 (205)
55 PRK03818 putative transporter; 92.1 0.17 3.6E-06 61.2 5.0 64 554-621 291-355 (552)
56 PF02080 TrkA_C: TrkA-C domain 91.8 0.2 4.3E-06 42.9 3.8 47 863-916 14-60 (71)
57 COG1748 LYS9 Saccharopine dehy 91.5 2.1 4.5E-05 49.4 12.6 130 383-547 2-135 (389)
58 TIGR01470 cysG_Nterm siroheme 91.3 2.1 4.6E-05 45.1 11.7 85 382-491 9-94 (205)
59 PF00520 Ion_trans: Ion transp 90.7 0.53 1.1E-05 47.6 6.4 50 312-361 144-200 (200)
60 KOG3827 Inward rectifier K+ ch 90.7 0.21 4.5E-06 56.3 3.5 74 312-389 111-187 (400)
61 PF03435 Saccharop_dh: Sacchar 90.4 1.4 3E-05 50.8 10.2 76 385-470 1-77 (386)
62 PRK03818 putative transporter; 89.7 0.52 1.1E-05 57.0 6.2 63 554-621 207-270 (552)
63 COG3273 Uncharacterized conser 89.3 0.43 9.4E-06 48.7 4.1 49 862-916 132-180 (204)
64 PRK12475 thiamine/molybdopteri 87.8 5.5 0.00012 45.3 12.3 98 381-491 23-141 (338)
65 PRK05562 precorrin-2 dehydroge 86.9 8.1 0.00017 41.4 12.2 86 382-491 25-110 (223)
66 PF13460 NAD_binding_10: NADH( 86.7 6 0.00013 39.9 10.9 69 385-470 1-70 (183)
67 PRK04972 putative transporter; 86.4 1.2 2.6E-05 54.0 6.4 54 564-621 228-282 (558)
68 COG3263 NhaP-type Na+/H+ and K 85.3 1.2 2.6E-05 51.3 5.1 54 561-620 422-476 (574)
69 PF05368 NmrA: NmrA-like famil 85.2 1.9 4.2E-05 45.6 6.6 73 646-732 1-74 (233)
70 PF00670 AdoHcyase_NAD: S-aden 84.8 2 4.4E-05 43.5 6.0 90 382-505 23-112 (162)
71 PF03493 BK_channel_a: Calcium 84.5 5.4 0.00012 37.2 8.4 72 810-884 9-101 (101)
72 PLN02819 lysine-ketoglutarate 84.1 5.7 0.00012 51.4 11.0 104 381-502 568-679 (1042)
73 PF13460 NAD_binding_10: NADH( 83.7 3.3 7.2E-05 41.8 7.3 69 646-732 1-70 (183)
74 CHL00194 ycf39 Ycf39; Provisio 82.1 9.2 0.0002 42.6 10.7 71 384-469 2-73 (317)
75 PRK05562 precorrin-2 dehydroge 81.5 6.3 0.00014 42.2 8.5 72 642-732 24-95 (223)
76 COG1648 CysG Siroheme synthase 80.9 10 0.00022 40.2 9.8 86 382-491 12-97 (210)
77 TIGR00933 2a38 potassium uptak 80.8 5.7 0.00012 46.1 8.6 41 310-350 345-389 (390)
78 cd01075 NAD_bind_Leu_Phe_Val_D 80.8 7.5 0.00016 40.8 8.8 103 382-517 28-134 (200)
79 COG0168 TrkG Trk-type K+ trans 80.4 9.1 0.0002 45.9 10.3 75 286-360 397-481 (499)
80 PF03435 Saccharop_dh: Sacchar 79.7 3.5 7.5E-05 47.5 6.4 75 646-731 1-76 (386)
81 PF05368 NmrA: NmrA-like famil 79.3 14 0.00031 38.9 10.6 71 385-470 1-74 (233)
82 cd05211 NAD_bind_Glu_Leu_Phe_V 78.4 8.1 0.00018 41.2 8.2 116 381-528 22-152 (217)
83 COG0300 DltE Short-chain dehyd 78.2 7.2 0.00016 42.8 7.8 70 381-457 5-75 (265)
84 PRK06914 short chain dehydroge 77.3 8.8 0.00019 41.6 8.4 82 383-470 4-91 (280)
85 PF13241 NAD_binding_7: Putati 76.3 22 0.00047 33.0 9.5 80 381-491 6-85 (103)
86 PRK04148 hypothetical protein; 76.0 5.5 0.00012 39.2 5.6 71 382-470 17-87 (134)
87 CHL00194 ycf39 Ycf39; Provisio 75.9 13 0.00028 41.4 9.5 71 645-731 2-73 (317)
88 cd05213 NAD_bind_Glutamyl_tRNA 75.9 15 0.00032 41.3 9.8 120 381-527 177-296 (311)
89 PLN03223 Polycystin cation cha 75.9 17 0.00037 47.5 11.0 55 312-368 1360-1425(1634)
90 PRK09186 flagellin modificatio 75.7 9.9 0.00021 40.4 8.1 69 382-456 4-73 (256)
91 PF00056 Ldh_1_N: lactate/mala 75.4 40 0.00087 33.2 11.7 78 383-470 1-79 (141)
92 PRK07688 thiamine/molybdopteri 75.3 32 0.00069 39.2 12.4 98 381-491 23-141 (339)
93 PLN00141 Tic62-NAD(P)-related 75.1 11 0.00024 40.4 8.3 77 382-470 17-95 (251)
94 COG1748 LYS9 Saccharopine dehy 74.8 7.2 0.00016 45.1 7.0 77 644-733 2-79 (389)
95 PF01488 Shikimate_DH: Shikima 74.5 12 0.00026 36.6 7.6 75 381-470 11-85 (135)
96 TIGR00934 2a38euk potassium up 74.5 12 0.00026 46.8 9.1 61 290-351 586-660 (800)
97 PRK06522 2-dehydropantoate 2-r 72.7 31 0.00068 37.9 11.4 40 383-428 1-40 (304)
98 PRK08251 short chain dehydroge 72.2 14 0.0003 39.1 8.2 81 383-469 3-90 (248)
99 PRK08267 short chain dehydroge 72.0 18 0.00038 38.8 9.0 78 644-732 2-87 (260)
100 PRK08265 short chain dehydroge 71.8 14 0.0003 39.8 8.2 76 382-468 6-88 (261)
101 cd01078 NAD_bind_H4MPT_DH NADP 71.4 16 0.00036 37.7 8.2 79 382-470 28-107 (194)
102 PF01408 GFO_IDH_MocA: Oxidore 71.3 37 0.0008 31.7 10.0 71 384-470 2-72 (120)
103 PLN03209 translocon at the inn 71.0 17 0.00036 44.3 9.1 83 381-470 79-169 (576)
104 PLN02819 lysine-ketoglutarate 70.9 9.1 0.0002 49.6 7.3 79 641-732 567-658 (1042)
105 PRK12475 thiamine/molybdopteri 70.7 26 0.00056 40.0 10.2 83 642-731 23-125 (338)
106 PRK08309 short chain dehydroge 70.4 17 0.00038 37.3 8.0 65 383-456 1-65 (177)
107 PF02386 TrkH: Cation transpor 70.3 3.3 7.1E-05 47.3 3.0 70 286-355 266-344 (354)
108 PRK08267 short chain dehydroge 70.2 16 0.00034 39.1 8.1 78 383-470 2-87 (260)
109 PRK06194 hypothetical protein; 70.0 15 0.00032 40.0 7.9 81 382-470 6-93 (287)
110 PRK00536 speE spermidine synth 69.9 13 0.00027 40.9 7.2 75 641-729 71-146 (262)
111 cd01065 NAD_bind_Shikimate_DH 69.5 16 0.00036 35.8 7.5 73 382-470 19-91 (155)
112 PLN02214 cinnamoyl-CoA reducta 69.4 22 0.00047 40.3 9.3 81 643-732 10-91 (342)
113 PRK01581 speE spermidine synth 69.2 31 0.00066 39.7 10.3 83 641-731 149-235 (374)
114 PRK10538 malonic semialdehyde 68.7 18 0.00038 38.6 8.0 76 383-469 1-83 (248)
115 PRK00536 speE spermidine synth 68.6 40 0.00086 37.0 10.7 100 380-504 71-173 (262)
116 PRK10637 cysG siroheme synthas 68.5 40 0.00088 40.0 11.6 86 381-491 11-97 (457)
117 PRK07831 short chain dehydroge 68.4 18 0.00038 38.8 8.1 68 382-455 17-86 (262)
118 PF01488 Shikimate_DH: Shikima 68.4 6.4 0.00014 38.4 4.2 74 642-732 11-85 (135)
119 PRK07024 short chain dehydroge 68.4 18 0.00039 38.7 8.1 79 382-469 2-87 (257)
120 PRK06101 short chain dehydroge 68.3 16 0.00034 38.7 7.6 62 383-456 2-64 (240)
121 PRK06949 short chain dehydroge 68.2 21 0.00045 38.0 8.5 81 381-469 8-95 (258)
122 PLN02780 ketoreductase/ oxidor 68.2 43 0.00094 37.6 11.3 61 382-448 53-114 (320)
123 PRK09291 short chain dehydroge 68.1 25 0.00054 37.3 9.1 79 383-469 3-82 (257)
124 PLN03209 translocon at the inn 68.1 14 0.00031 44.8 7.8 86 641-732 78-169 (576)
125 PRK07326 short chain dehydroge 67.9 19 0.00042 37.7 8.1 79 382-469 6-91 (237)
126 PRK06138 short chain dehydroge 67.6 20 0.00043 37.9 8.1 80 382-470 5-91 (252)
127 PRK06940 short chain dehydroge 67.5 17 0.00036 39.7 7.7 65 382-455 2-66 (275)
128 PRK07063 short chain dehydroge 67.5 20 0.00044 38.3 8.2 81 383-469 8-95 (260)
129 PRK05854 short chain dehydroge 67.1 19 0.00042 40.1 8.2 69 382-456 14-83 (313)
130 PF00106 adh_short: short chai 66.9 18 0.0004 35.5 7.2 81 383-470 1-90 (167)
131 PLN02896 cinnamyl-alcohol dehy 66.8 24 0.00051 39.9 9.0 81 380-470 8-89 (353)
132 PLN02427 UDP-apiose/xylose syn 66.8 17 0.00037 41.6 8.0 81 382-469 14-95 (386)
133 PRK10750 potassium transporter 66.8 38 0.00083 40.5 11.0 70 289-359 398-475 (483)
134 PRK07231 fabG 3-ketoacyl-(acyl 66.3 21 0.00045 37.7 7.9 78 383-469 6-90 (251)
135 PRK07454 short chain dehydroge 66.3 22 0.00048 37.5 8.1 79 383-469 7-92 (241)
136 COG1648 CysG Siroheme synthase 66.0 16 0.00034 38.8 6.8 72 642-732 11-82 (210)
137 PRK07062 short chain dehydroge 65.9 23 0.00049 38.0 8.3 68 382-455 8-76 (265)
138 KOG3676 Ca2+-permeable cation 65.8 46 0.00099 41.5 11.3 74 295-368 551-650 (782)
139 PRK11908 NAD-dependent epimera 65.8 18 0.00039 40.8 7.7 73 383-468 2-76 (347)
140 TIGR01181 dTDP_gluc_dehyt dTDP 65.5 14 0.00031 40.3 6.8 80 645-732 1-83 (317)
141 PRK07666 fabG 3-ketoacyl-(acyl 65.3 21 0.00046 37.5 7.8 80 382-469 7-93 (239)
142 TIGR03649 ergot_EASG ergot alk 65.2 18 0.00039 39.4 7.4 69 385-470 2-77 (285)
143 PRK06200 2,3-dihydroxy-2,3-dih 64.7 22 0.00047 38.2 7.8 64 382-456 6-70 (263)
144 PLN02650 dihydroflavonol-4-red 64.7 24 0.00053 39.7 8.6 82 382-470 5-87 (351)
145 TIGR03589 PseB UDP-N-acetylglu 64.6 29 0.00063 38.9 9.1 79 383-470 5-84 (324)
146 PLN02366 spermidine synthase 64.6 58 0.0013 36.6 11.3 82 381-470 91-175 (308)
147 cd05291 HicDH_like L-2-hydroxy 64.3 18 0.00038 40.5 7.2 75 384-470 2-78 (306)
148 PLN02989 cinnamyl-alcohol dehy 63.8 23 0.00049 39.4 8.0 82 382-470 5-87 (325)
149 PRK07067 sorbitol dehydrogenas 63.8 25 0.00055 37.5 8.1 64 382-456 6-70 (257)
150 PRK05993 short chain dehydroge 63.7 20 0.00044 38.9 7.4 61 382-456 4-65 (277)
151 PRK12829 short chain dehydroge 63.6 24 0.00052 37.6 7.9 79 381-469 10-95 (264)
152 PLN00141 Tic62-NAD(P)-related 63.3 23 0.00049 38.0 7.6 77 643-732 17-95 (251)
153 PRK06482 short chain dehydroge 63.2 25 0.00054 38.0 8.0 77 383-470 3-86 (276)
154 PRK08340 glucose-1-dehydrogena 63.0 24 0.00052 37.8 7.8 64 383-455 1-65 (259)
155 KOG1014 17 beta-hydroxysteroid 62.9 64 0.0014 36.2 10.9 43 382-430 49-92 (312)
156 PF00899 ThiF: ThiF family; I 62.9 84 0.0018 30.4 10.8 35 382-421 2-36 (135)
157 PRK10637 cysG siroheme synthas 62.7 25 0.00053 41.8 8.4 72 642-732 11-82 (457)
158 PRK06172 short chain dehydroge 62.7 27 0.00059 37.0 8.1 67 382-456 7-74 (253)
159 cd01078 NAD_bind_H4MPT_DH NADP 62.7 16 0.00035 37.7 6.1 78 643-731 28-106 (194)
160 TIGR01832 kduD 2-deoxy-D-gluco 62.4 69 0.0015 33.8 11.1 79 643-732 5-90 (248)
161 PRK08017 oxidoreductase; Provi 62.1 23 0.0005 37.6 7.4 59 383-455 3-62 (256)
162 TIGR03466 HpnA hopanoid-associ 62.1 18 0.0004 39.8 6.8 71 645-731 2-73 (328)
163 PF00060 Lig_chan: Ligand-gate 62.0 3.6 7.7E-05 40.1 1.0 55 314-368 45-99 (148)
164 PRK07074 short chain dehydroge 61.9 39 0.00084 35.9 9.1 78 644-732 3-87 (257)
165 TIGR02356 adenyl_thiF thiazole 61.6 92 0.002 32.6 11.6 35 381-420 20-54 (202)
166 PRK08643 acetoin reductase; Va 61.5 28 0.00061 37.0 7.9 78 383-468 3-87 (256)
167 PRK12429 3-hydroxybutyrate deh 61.4 28 0.00061 36.8 7.9 79 383-469 5-90 (258)
168 PRK07102 short chain dehydroge 61.3 27 0.00059 36.8 7.7 79 383-468 2-84 (243)
169 PRK05565 fabG 3-ketoacyl-(acyl 61.2 29 0.00064 36.3 8.0 81 382-470 5-93 (247)
170 PRK12939 short chain dehydroge 61.2 33 0.00072 36.1 8.4 81 382-470 7-94 (250)
171 PRK07523 gluconate 5-dehydroge 61.2 31 0.00066 36.8 8.1 80 382-469 10-96 (255)
172 PLN02662 cinnamyl-alcohol dehy 61.2 24 0.00052 39.0 7.5 81 383-470 5-86 (322)
173 PRK06500 short chain dehydroge 60.9 33 0.00071 36.1 8.3 77 382-469 6-89 (249)
174 PRK08219 short chain dehydroge 60.7 27 0.00059 36.1 7.5 75 383-470 4-81 (227)
175 COG0421 SpeE Spermidine syntha 60.4 25 0.00055 39.0 7.4 78 383-470 78-159 (282)
176 PRK14106 murD UDP-N-acetylmura 60.4 16 0.00036 42.8 6.4 74 643-732 5-78 (450)
177 PF00106 adh_short: short chai 60.3 17 0.00037 35.8 5.6 84 644-733 1-91 (167)
178 PRK06924 short chain dehydroge 60.3 27 0.00059 37.0 7.5 63 383-456 2-66 (251)
179 PRK07097 gluconate 5-dehydroge 60.2 30 0.00066 37.1 8.0 80 382-469 10-96 (265)
180 PRK06182 short chain dehydroge 60.2 26 0.00056 37.9 7.4 75 382-470 3-84 (273)
181 PRK06124 gluconate 5-dehydroge 60.2 30 0.00066 36.8 7.9 67 382-456 11-78 (256)
182 TIGR00518 alaDH alanine dehydr 60.1 38 0.00082 39.1 9.1 72 382-468 167-238 (370)
183 PRK12384 sorbitol-6-phosphate 60.0 32 0.00069 36.6 8.1 68 383-456 3-71 (259)
184 PRK06924 short chain dehydroge 59.6 25 0.00054 37.3 7.1 63 644-717 2-65 (251)
185 PF13478 XdhC_C: XdhC Rossmann 59.6 28 0.0006 34.3 6.7 77 646-750 1-77 (136)
186 PRK06914 short chain dehydroge 59.6 57 0.0012 35.2 10.0 81 644-732 4-91 (280)
187 PRK05866 short chain dehydroge 59.5 31 0.00067 38.1 8.0 80 382-469 40-126 (293)
188 TIGR03466 HpnA hopanoid-associ 59.5 20 0.00043 39.6 6.5 71 384-469 2-73 (328)
189 PRK09242 tropinone reductase; 59.5 33 0.00071 36.6 8.0 81 383-469 10-97 (257)
190 PF00670 AdoHcyase_NAD: S-aden 59.5 9.3 0.0002 38.8 3.5 36 642-680 22-57 (162)
191 TIGR03589 PseB UDP-N-acetylglu 59.4 27 0.00058 39.2 7.6 79 644-732 5-84 (324)
192 TIGR03438 probable methyltrans 59.2 1.2E+02 0.0025 33.9 12.6 116 388-514 72-189 (301)
193 PRK08339 short chain dehydroge 59.2 33 0.00071 37.0 8.0 67 383-456 9-76 (263)
194 PLN02366 spermidine synthase 59.1 35 0.00077 38.3 8.3 83 641-731 90-174 (308)
195 PRK01581 speE spermidine synth 59.1 1.2E+02 0.0026 35.0 12.6 81 381-470 150-236 (374)
196 PRK06197 short chain dehydroge 59.1 29 0.00062 38.4 7.7 82 382-469 16-104 (306)
197 TIGR02964 xanthine_xdhC xanthi 58.9 35 0.00075 37.1 8.0 86 641-750 98-183 (246)
198 PRK05482 potassium-transportin 58.8 27 0.0006 42.1 7.7 48 312-359 450-501 (559)
199 TIGR00933 2a38 potassium uptak 58.7 30 0.00064 40.2 7.9 38 296-334 111-149 (390)
200 PRK05867 short chain dehydroge 58.5 36 0.00079 36.2 8.1 67 382-456 9-76 (253)
201 PRK08213 gluconate 5-dehydroge 58.3 37 0.00079 36.3 8.1 80 382-469 12-98 (259)
202 PLN02583 cinnamoyl-CoA reducta 58.2 33 0.00071 37.9 7.9 79 643-730 6-86 (297)
203 PRK07576 short chain dehydroge 58.1 34 0.00074 36.9 7.9 79 382-468 9-94 (264)
204 PRK06194 hypothetical protein; 58.1 61 0.0013 35.1 10.0 81 643-732 6-93 (287)
205 PRK00811 spermidine synthase; 58.0 87 0.0019 34.6 11.2 81 381-470 76-160 (283)
206 PRK12826 3-ketoacyl-(acyl-carr 57.5 37 0.00081 35.7 8.0 81 382-470 6-93 (251)
207 PRK09291 short chain dehydroge 57.3 70 0.0015 33.9 10.1 80 644-732 3-83 (257)
208 PRK05875 short chain dehydroge 57.3 42 0.00092 36.1 8.5 82 382-469 7-95 (276)
209 PRK07109 short chain dehydroge 57.1 36 0.00079 38.4 8.2 80 382-469 8-94 (334)
210 PRK07890 short chain dehydroge 57.1 37 0.00079 36.1 7.9 80 382-469 5-91 (258)
211 PLN02214 cinnamoyl-CoA reducta 57.1 63 0.0014 36.5 10.1 80 382-470 10-91 (342)
212 TIGR02853 spore_dpaA dipicolin 56.9 1.1E+02 0.0024 34.0 11.8 121 382-536 151-281 (287)
213 PRK01438 murD UDP-N-acetylmura 56.9 21 0.00046 42.4 6.5 71 642-732 15-88 (480)
214 PRK05650 short chain dehydroge 56.8 36 0.00079 36.6 7.9 78 384-469 2-86 (270)
215 PRK06180 short chain dehydroge 56.7 36 0.00077 37.0 7.8 63 383-456 5-68 (277)
216 PF01210 NAD_Gly3P_dh_N: NAD-d 56.5 16 0.00035 36.5 4.7 77 384-470 1-79 (157)
217 PRK13394 3-hydroxybutyrate deh 56.5 37 0.00079 36.1 7.8 79 383-469 8-93 (262)
218 PRK12829 short chain dehydroge 56.4 28 0.0006 37.1 6.8 80 642-732 10-96 (264)
219 TIGR03325 BphB_TodD cis-2,3-di 56.3 39 0.00085 36.2 8.0 75 383-468 6-87 (262)
220 PRK07074 short chain dehydroge 56.2 48 0.001 35.2 8.6 78 383-470 3-87 (257)
221 PRK05717 oxidoreductase; Valid 56.1 46 0.001 35.4 8.5 77 382-469 10-93 (255)
222 PRK06139 short chain dehydroge 56.1 36 0.00078 38.4 7.9 80 382-469 7-93 (330)
223 PRK06196 oxidoreductase; Provi 56.0 31 0.00067 38.3 7.3 75 383-469 27-108 (315)
224 PRK07825 short chain dehydroge 56.0 35 0.00076 36.8 7.6 61 383-455 6-67 (273)
225 PRK05653 fabG 3-ketoacyl-(acyl 55.9 41 0.0009 35.1 8.0 80 383-470 6-92 (246)
226 PLN02427 UDP-apiose/xylose syn 55.8 42 0.00092 38.4 8.6 83 642-732 13-96 (386)
227 PRK04457 spermidine synthase; 55.8 1.2E+02 0.0026 33.1 11.7 79 382-469 67-145 (262)
228 PRK05884 short chain dehydroge 55.7 32 0.00069 36.2 7.0 72 384-468 2-77 (223)
229 PLN02657 3,8-divinyl protochlo 55.7 23 0.00049 41.1 6.3 80 382-469 60-145 (390)
230 PRK07424 bifunctional sterol d 55.6 97 0.0021 36.3 11.5 76 382-469 178-254 (406)
231 PRK08264 short chain dehydroge 55.4 46 0.00099 34.9 8.2 74 382-470 6-83 (238)
232 TIGR00518 alaDH alanine dehydr 55.3 27 0.00059 40.2 6.8 72 643-730 167-238 (370)
233 PRK06181 short chain dehydroge 55.2 41 0.0009 35.9 7.9 79 383-469 2-87 (263)
234 PF00070 Pyr_redox: Pyridine n 55.1 17 0.00037 31.8 4.0 31 645-678 1-31 (80)
235 PF10883 DUF2681: Protein of u 55.1 27 0.00058 31.8 5.2 33 159-191 3-35 (87)
236 PRK07688 thiamine/molybdopteri 54.8 44 0.00095 38.1 8.3 82 642-731 23-125 (339)
237 PRK06179 short chain dehydroge 54.7 23 0.00049 38.2 5.8 73 382-470 4-83 (270)
238 COG0373 HemA Glutamyl-tRNA red 54.6 22 0.00048 41.5 5.9 71 642-732 177-248 (414)
239 PRK09072 short chain dehydroge 54.3 46 0.00099 35.6 8.1 79 382-469 5-89 (263)
240 PF03446 NAD_binding_2: NAD bi 54.1 1.5E+02 0.0033 29.6 11.3 92 383-505 2-96 (163)
241 PRK12481 2-deoxy-D-gluconate 3 54.1 37 0.00079 36.3 7.3 79 643-732 8-93 (251)
242 PRK07024 short chain dehydroge 54.0 37 0.00079 36.3 7.3 80 643-732 2-88 (257)
243 PRK07904 short chain dehydroge 53.7 41 0.0009 36.1 7.6 81 382-468 8-95 (253)
244 PF08016 PKD_channel: Polycyst 53.7 1.3E+02 0.0028 35.2 12.3 29 159-187 207-235 (425)
245 TIGR00872 gnd_rel 6-phosphoglu 53.7 1.3E+02 0.0028 33.5 11.7 68 384-470 2-69 (298)
246 PRK12824 acetoacetyl-CoA reduc 53.7 98 0.0021 32.3 10.4 82 643-732 2-90 (245)
247 PRK07326 short chain dehydroge 53.6 66 0.0014 33.6 9.0 79 643-732 6-92 (237)
248 COG4262 Predicted spermidine s 53.4 1.2E+02 0.0027 34.7 11.1 115 380-505 288-410 (508)
249 PRK07478 short chain dehydroge 53.4 49 0.0011 35.2 8.1 79 383-469 7-92 (254)
250 TIGR03649 ergot_EASG ergot alk 53.3 26 0.00055 38.2 6.0 69 645-731 1-76 (285)
251 PRK07417 arogenate dehydrogena 53.2 30 0.00065 38.0 6.5 66 384-470 2-67 (279)
252 PRK08125 bifunctional UDP-gluc 53.1 28 0.00061 43.3 7.0 78 380-469 313-391 (660)
253 TIGR01500 sepiapter_red sepiap 53.1 47 0.001 35.5 7.9 71 384-456 2-73 (256)
254 PRK08217 fabG 3-ketoacyl-(acyl 53.1 49 0.0011 34.8 8.0 80 382-469 5-91 (253)
255 PF07991 IlvN: Acetohydroxy ac 53.1 16 0.00034 37.2 3.9 66 382-470 4-70 (165)
256 PRK05599 hypothetical protein; 53.0 44 0.00095 35.6 7.6 64 384-455 2-66 (246)
257 PRK09135 pteridine reductase; 52.6 57 0.0012 34.2 8.4 81 382-469 6-94 (249)
258 PRK06138 short chain dehydroge 52.6 1.4E+02 0.0029 31.5 11.3 80 643-732 5-91 (252)
259 TIGR01181 dTDP_gluc_dehyt dTDP 52.5 34 0.00074 37.3 6.9 78 384-470 1-83 (317)
260 COG2985 Predicted permease [Ge 52.4 12 0.00027 43.8 3.4 57 561-621 211-268 (544)
261 PRK05476 S-adenosyl-L-homocyst 52.4 66 0.0014 37.9 9.4 37 382-424 212-248 (425)
262 PF01210 NAD_Gly3P_dh_N: NAD-d 52.3 17 0.00037 36.3 4.1 78 645-731 1-78 (157)
263 KOG1201 Hydroxysteroid 17-beta 52.2 1.3E+02 0.0029 33.5 11.1 66 381-455 37-103 (300)
264 COG0373 HemA Glutamyl-tRNA red 52.2 45 0.00098 39.0 7.9 72 382-471 178-249 (414)
265 PRK05876 short chain dehydroge 52.2 52 0.0011 35.9 8.2 66 383-456 7-73 (275)
266 PRK08085 gluconate 5-dehydroge 52.1 52 0.0011 35.0 8.0 67 382-456 9-76 (254)
267 PRK12828 short chain dehydroge 52.0 46 0.00099 34.6 7.5 77 383-469 8-91 (239)
268 PLN02583 cinnamoyl-CoA reducta 51.9 61 0.0013 35.7 8.8 78 382-468 6-86 (297)
269 PRK07454 short chain dehydroge 51.8 37 0.0008 35.7 6.8 81 643-732 6-93 (241)
270 PRK07774 short chain dehydroge 51.8 55 0.0012 34.5 8.2 80 382-469 6-92 (250)
271 TIGR02415 23BDH acetoin reduct 51.5 53 0.0011 34.7 8.0 78 384-469 2-86 (254)
272 PLN02253 xanthoxin dehydrogena 51.2 56 0.0012 35.3 8.3 78 383-469 19-103 (280)
273 PRK12429 3-hydroxybutyrate deh 51.0 86 0.0019 33.1 9.5 80 644-732 5-91 (258)
274 cd01483 E1_enzyme_family Super 51.0 1.3E+02 0.0028 29.2 10.0 32 384-420 1-32 (143)
275 PLN02986 cinnamyl-alcohol dehy 50.9 53 0.0011 36.4 8.1 79 382-470 5-87 (322)
276 PRK15181 Vi polysaccharide bio 50.9 40 0.00087 38.1 7.3 85 643-732 15-100 (348)
277 PRK07453 protochlorophyllide o 50.8 57 0.0012 36.3 8.4 66 382-455 6-72 (322)
278 PF01073 3Beta_HSD: 3-beta hyd 50.7 21 0.00045 39.5 4.8 73 648-731 2-75 (280)
279 cd01485 E1-1_like Ubiquitin ac 50.5 90 0.0019 32.6 9.2 35 381-420 18-52 (198)
280 PRK12936 3-ketoacyl-(acyl-carr 50.3 61 0.0013 33.9 8.2 78 382-470 6-90 (245)
281 PRK12826 3-ketoacyl-(acyl-carr 50.0 51 0.0011 34.6 7.5 79 643-732 6-93 (251)
282 PRK07060 short chain dehydroge 49.8 51 0.0011 34.6 7.5 76 382-470 9-87 (245)
283 PLN02662 cinnamyl-alcohol dehy 49.8 37 0.00079 37.5 6.6 80 644-732 5-86 (322)
284 PRK07814 short chain dehydroge 49.8 58 0.0013 34.9 8.0 80 382-469 10-96 (263)
285 TIGR03206 benzo_BadH 2-hydroxy 49.6 60 0.0013 34.1 8.0 80 382-469 3-89 (250)
286 TIGR01289 LPOR light-dependent 49.6 61 0.0013 36.1 8.4 66 382-455 3-70 (314)
287 PRK15181 Vi polysaccharide bio 49.5 46 0.001 37.6 7.5 82 382-470 15-100 (348)
288 PLN02650 dihydroflavonol-4-red 49.5 43 0.00092 37.8 7.2 81 643-732 5-87 (351)
289 PRK07831 short chain dehydroge 49.3 1.1E+02 0.0025 32.5 10.2 84 642-732 16-107 (262)
290 PLN02896 cinnamyl-alcohol dehy 49.3 57 0.0012 36.8 8.2 80 642-732 9-89 (353)
291 TIGR00934 2a38euk potassium up 49.3 77 0.0017 39.9 9.6 55 296-350 710-784 (800)
292 PRK08594 enoyl-(acyl carrier p 49.3 43 0.00092 36.1 6.9 80 643-731 7-96 (257)
293 PLN02989 cinnamyl-alcohol dehy 49.3 56 0.0012 36.2 8.0 80 643-732 5-87 (325)
294 PRK08589 short chain dehydroge 49.2 61 0.0013 35.1 8.1 65 382-455 6-71 (272)
295 PF08659 KR: KR domain; Inter 49.1 1.2E+02 0.0025 31.0 9.7 101 645-755 2-114 (181)
296 TIGR02415 23BDH acetoin reduct 49.1 1.5E+02 0.0033 31.2 11.0 80 644-732 1-87 (254)
297 KOG1053 Glutamate-gated NMDA-t 49.0 45 0.00098 41.9 7.3 56 312-367 608-664 (1258)
298 PRK08251 short chain dehydroge 49.0 1.7E+02 0.0036 30.8 11.3 83 643-732 2-91 (248)
299 COG1087 GalE UDP-glucose 4-epi 48.8 31 0.00068 38.5 5.6 75 645-733 2-78 (329)
300 PRK07677 short chain dehydroge 48.7 63 0.0014 34.3 8.1 78 383-468 2-86 (252)
301 PRK06101 short chain dehydroge 48.6 37 0.00081 35.9 6.2 75 644-731 2-80 (240)
302 PRK05693 short chain dehydroge 48.5 53 0.0011 35.4 7.5 73 383-469 2-81 (274)
303 TIGR01963 PHB_DH 3-hydroxybuty 48.4 56 0.0012 34.4 7.6 78 384-469 3-87 (255)
304 KOG1370 S-adenosylhomocysteine 47.9 1.5E+02 0.0032 33.3 10.4 36 642-680 213-248 (434)
305 PRK12921 2-dehydropantoate 2-r 47.9 1.6E+02 0.0035 32.3 11.4 38 383-427 1-38 (305)
306 PRK07775 short chain dehydroge 47.5 65 0.0014 34.9 8.0 81 382-470 10-97 (274)
307 PRK08277 D-mannonate oxidoredu 47.5 62 0.0013 34.9 7.9 80 382-469 10-96 (278)
308 PRK13394 3-hydroxybutyrate deh 47.5 56 0.0012 34.7 7.4 79 643-732 7-94 (262)
309 PRK06057 short chain dehydroge 47.4 51 0.0011 35.1 7.1 60 383-455 8-68 (255)
310 PRK08263 short chain dehydroge 47.2 64 0.0014 34.9 7.9 77 383-470 4-87 (275)
311 PRK07035 short chain dehydroge 47.1 72 0.0016 33.8 8.1 66 382-455 8-74 (252)
312 PRK07904 short chain dehydroge 47.0 45 0.00097 35.8 6.6 82 641-731 6-96 (253)
313 PRK05993 short chain dehydroge 47.0 42 0.00091 36.4 6.4 74 643-731 4-85 (277)
314 PRK08993 2-deoxy-D-gluconate 3 46.9 1.3E+02 0.0028 32.0 10.1 79 643-732 10-95 (253)
315 PRK06483 dihydromonapterin red 46.9 52 0.0011 34.5 6.9 61 382-455 2-63 (236)
316 cd05290 LDH_3 A subgroup of L- 46.9 1.5E+02 0.0032 33.4 10.8 75 384-470 1-78 (307)
317 PRK12935 acetoacetyl-CoA reduc 46.8 1.1E+02 0.0024 32.2 9.5 82 643-732 6-94 (247)
318 PRK03612 spermidine synthase; 46.8 79 0.0017 38.3 9.2 82 641-730 296-381 (521)
319 PLN02494 adenosylhomocysteinas 46.5 81 0.0018 37.6 8.9 37 382-424 254-290 (477)
320 PRK05326 potassium/proton anti 46.5 21 0.00046 43.4 4.4 45 863-916 429-473 (562)
321 PRK05872 short chain dehydroge 46.4 73 0.0016 35.1 8.3 66 382-456 9-75 (296)
322 PF03807 F420_oxidored: NADP o 46.4 50 0.0011 29.6 5.8 80 384-485 1-81 (96)
323 COG0771 MurD UDP-N-acetylmuram 46.4 41 0.00088 39.8 6.4 36 643-681 7-42 (448)
324 cd01065 NAD_bind_Shikimate_DH 46.2 40 0.00088 33.0 5.6 75 642-733 18-92 (155)
325 PLN02657 3,8-divinyl protochlo 46.1 84 0.0018 36.4 9.0 80 641-731 58-145 (390)
326 PRK08643 acetoin reductase; Va 46.0 1.5E+02 0.0032 31.4 10.4 81 643-732 2-89 (256)
327 PLN02823 spermine synthase 46.0 60 0.0013 37.0 7.6 80 382-470 104-186 (336)
328 KOG4440 NMDA selective glutama 45.9 21 0.00046 42.8 3.9 53 312-364 612-665 (993)
329 TIGR00936 ahcY adenosylhomocys 45.7 74 0.0016 37.3 8.4 37 382-424 195-231 (406)
330 KOG1210 Predicted 3-ketosphing 45.6 1.1E+02 0.0023 34.6 9.1 67 381-453 32-99 (331)
331 PRK06079 enoyl-(acyl carrier p 45.5 68 0.0015 34.3 7.7 63 382-455 7-72 (252)
332 PRK12939 short chain dehydroge 45.4 1.3E+02 0.0028 31.5 9.8 81 643-732 7-94 (250)
333 PF00070 Pyr_redox: Pyridine n 45.3 27 0.00058 30.5 3.7 32 384-421 1-32 (80)
334 COG4262 Predicted spermidine s 45.2 67 0.0015 36.8 7.5 85 640-732 287-375 (508)
335 PF05399 EVI2A: Ectropic viral 45.2 83 0.0018 33.2 7.6 30 160-189 137-166 (227)
336 PRK07062 short chain dehydroge 45.0 2E+02 0.0044 30.6 11.3 81 643-732 8-97 (265)
337 PRK06949 short chain dehydroge 44.8 1E+02 0.0022 32.6 9.0 81 643-732 9-96 (258)
338 PF02737 3HCDH_N: 3-hydroxyacy 44.6 46 0.001 34.2 5.9 40 384-429 1-40 (180)
339 PRK08862 short chain dehydroge 44.5 80 0.0017 33.4 7.9 41 383-429 6-47 (227)
340 PRK06125 short chain dehydroge 44.3 83 0.0018 33.5 8.1 79 383-468 8-89 (259)
341 PRK08017 oxidoreductase; Provi 44.3 44 0.00095 35.4 5.9 73 644-731 3-83 (256)
342 KOG1370 S-adenosylhomocysteine 44.2 87 0.0019 35.0 8.0 78 382-491 214-292 (434)
343 COG1086 Predicted nucleoside-d 44.1 2.3E+02 0.0051 34.5 12.1 74 379-469 113-186 (588)
344 PRK06172 short chain dehydroge 44.0 70 0.0015 33.9 7.5 79 643-732 7-94 (253)
345 PRK06124 gluconate 5-dehydroge 44.0 85 0.0018 33.3 8.1 79 643-732 11-98 (256)
346 PF01564 Spermine_synth: Sperm 44.0 63 0.0014 35.0 7.1 84 642-732 76-160 (246)
347 COG1086 Predicted nucleoside-d 43.9 1.3E+02 0.0029 36.4 10.1 100 382-486 250-358 (588)
348 PRK07060 short chain dehydroge 43.9 1.2E+02 0.0027 31.6 9.3 76 643-732 9-87 (245)
349 PRK06482 short chain dehydroge 43.9 1.7E+02 0.0038 31.4 10.7 77 644-732 3-86 (276)
350 PRK08063 enoyl-(acyl carrier p 43.8 75 0.0016 33.5 7.7 80 383-470 5-92 (250)
351 PRK05557 fabG 3-ketoacyl-(acyl 43.8 1.4E+02 0.003 31.1 9.6 82 643-732 5-93 (248)
352 PRK06953 short chain dehydroge 43.8 1.2E+02 0.0025 31.6 9.0 72 384-469 3-79 (222)
353 COG0499 SAM1 S-adenosylhomocys 43.7 69 0.0015 36.7 7.3 65 382-470 209-274 (420)
354 TIGR03439 methyl_EasF probable 43.7 5E+02 0.011 29.4 14.4 123 385-513 80-208 (319)
355 PRK07677 short chain dehydroge 43.5 1.8E+02 0.004 30.7 10.6 79 644-731 2-87 (252)
356 PRK07832 short chain dehydroge 43.5 77 0.0017 34.2 7.8 79 384-469 2-87 (272)
357 PF12847 Methyltransf_18: Meth 43.4 1.1E+02 0.0023 27.9 7.7 76 383-468 3-78 (112)
358 PRK07231 fabG 3-ketoacyl-(acyl 43.4 59 0.0013 34.2 6.7 79 643-732 5-91 (251)
359 PLN00198 anthocyanidin reducta 43.3 85 0.0018 35.1 8.4 81 382-470 9-90 (338)
360 PTZ00075 Adenosylhomocysteinas 43.3 66 0.0014 38.3 7.5 38 381-424 253-290 (476)
361 KOG1208 Dehydrogenases with di 43.3 86 0.0019 35.4 8.2 69 381-455 33-103 (314)
362 PRK07067 sorbitol dehydrogenas 43.2 1.3E+02 0.0028 31.9 9.5 78 643-732 6-90 (257)
363 PRK07666 fabG 3-ketoacyl-(acyl 43.2 1.9E+02 0.0041 30.2 10.6 81 643-732 7-94 (239)
364 PRK06182 short chain dehydroge 43.1 1.4E+02 0.0029 32.2 9.7 75 643-732 3-84 (273)
365 cd05213 NAD_bind_Glutamyl_tRNA 43.1 43 0.00093 37.6 5.8 72 642-732 177-248 (311)
366 PRK12745 3-ketoacyl-(acyl-carr 43.1 60 0.0013 34.4 6.8 82 643-732 2-90 (256)
367 TIGR01472 gmd GDP-mannose 4,6- 43.1 52 0.0011 37.0 6.6 83 644-732 1-88 (343)
368 PRK11908 NAD-dependent epimera 43.0 69 0.0015 36.0 7.6 74 644-731 2-77 (347)
369 PRK12320 hypothetical protein; 43.0 1.1E+02 0.0024 38.4 9.7 68 384-470 2-70 (699)
370 PF02558 ApbA: Ketopantoate re 42.9 1.4E+02 0.003 29.0 8.9 74 385-470 1-77 (151)
371 PRK09135 pteridine reductase; 42.9 1.4E+02 0.003 31.3 9.5 83 643-732 6-95 (249)
372 PRK08416 7-alpha-hydroxysteroi 42.8 65 0.0014 34.5 7.0 82 643-731 8-96 (260)
373 KOG1371 UDP-glucose 4-epimeras 42.7 84 0.0018 35.6 7.7 99 643-752 2-111 (343)
374 PRK08264 short chain dehydroge 42.7 1.9E+02 0.0041 30.2 10.4 74 643-732 6-83 (238)
375 PLN02823 spermine synthase 42.7 84 0.0018 35.8 8.1 82 642-731 103-185 (336)
376 PRK10675 UDP-galactose-4-epime 42.5 64 0.0014 35.9 7.2 78 645-732 2-83 (338)
377 PRK08416 7-alpha-hydroxysteroi 42.4 95 0.0021 33.2 8.3 66 383-455 9-76 (260)
378 PRK08213 gluconate 5-dehydroge 42.3 1.4E+02 0.0031 31.7 9.6 81 643-732 12-99 (259)
379 PRK08762 molybdopterin biosynt 42.3 2.5E+02 0.0054 32.4 12.0 35 381-420 134-168 (376)
380 PRK14106 murD UDP-N-acetylmura 42.1 61 0.0013 38.0 7.2 73 382-470 5-78 (450)
381 PLN02695 GDP-D-mannose-3',5'-e 41.9 75 0.0016 36.4 7.7 74 642-731 20-94 (370)
382 PRK12490 6-phosphogluconate de 41.9 2.8E+02 0.0061 30.7 12.1 67 384-470 2-69 (299)
383 PLN00198 anthocyanidin reducta 41.9 87 0.0019 35.0 8.1 80 643-732 9-90 (338)
384 PRK07806 short chain dehydroge 41.8 62 0.0013 34.1 6.6 81 643-731 6-93 (248)
385 PRK00811 spermidine synthase; 41.7 67 0.0015 35.5 7.0 81 642-730 76-158 (283)
386 PRK00066 ldh L-lactate dehydro 41.7 3.2E+02 0.007 30.7 12.5 76 382-470 6-83 (315)
387 PLN02686 cinnamoyl-CoA reducta 41.7 86 0.0019 35.9 8.2 79 381-468 52-136 (367)
388 PRK07063 short chain dehydroge 41.5 1.4E+02 0.0031 31.7 9.4 83 643-732 7-96 (260)
389 PRK07424 bifunctional sterol d 41.4 1.4E+02 0.0031 34.9 9.9 77 643-732 178-255 (406)
390 PRK12548 shikimate 5-dehydroge 41.4 1.1E+02 0.0024 33.9 8.8 81 382-470 126-209 (289)
391 PRK12825 fabG 3-ketoacyl-(acyl 41.0 1.6E+02 0.0035 30.5 9.6 81 644-732 7-94 (249)
392 COG0421 SpeE Spermidine syntha 41.0 95 0.0021 34.5 8.0 99 644-757 78-178 (282)
393 PRK07097 gluconate 5-dehydroge 41.0 2.6E+02 0.0057 29.8 11.4 81 643-732 10-97 (265)
394 PRK06113 7-alpha-hydroxysteroi 41.0 99 0.0021 32.9 8.1 80 382-469 11-97 (255)
395 PRK06484 short chain dehydroge 40.9 79 0.0017 37.7 8.0 63 382-455 269-332 (520)
396 PRK08594 enoyl-(acyl carrier p 40.9 91 0.002 33.5 7.8 63 383-455 8-76 (257)
397 TIGR01832 kduD 2-deoxy-D-gluco 40.9 99 0.0022 32.5 8.0 76 383-469 6-89 (248)
398 PLN02986 cinnamyl-alcohol dehy 40.8 89 0.0019 34.6 7.9 81 643-732 5-87 (322)
399 PRK08063 enoyl-(acyl carrier p 40.7 66 0.0014 33.9 6.6 81 644-732 5-92 (250)
400 PRK08265 short chain dehydroge 40.6 75 0.0016 34.1 7.1 77 643-731 6-89 (261)
401 PF05185 PRMT5: PRMT5 arginine 40.6 72 0.0016 37.9 7.4 78 382-466 187-264 (448)
402 TIGR03025 EPS_sugtrans exopoly 40.5 2.7E+02 0.0059 32.7 12.3 74 382-470 125-198 (445)
403 PRK07523 gluconate 5-dehydroge 40.3 88 0.0019 33.2 7.6 81 643-732 10-97 (255)
404 PRK06079 enoyl-(acyl carrier p 40.3 68 0.0015 34.3 6.7 77 643-731 7-92 (252)
405 PRK07985 oxidoreductase; Provi 40.3 65 0.0014 35.5 6.7 82 643-731 49-137 (294)
406 PRK08628 short chain dehydroge 40.3 88 0.0019 33.2 7.5 79 382-469 7-92 (258)
407 PF02558 ApbA: Ketopantoate re 40.1 63 0.0014 31.5 5.9 76 646-731 1-76 (151)
408 PRK12743 oxidoreductase; Provi 40.1 1.6E+02 0.0034 31.3 9.5 82 643-732 2-90 (256)
409 PRK09186 flagellin modificatio 40.0 85 0.0018 33.2 7.3 82 643-731 4-92 (256)
410 cd00757 ThiF_MoeB_HesA_family 39.9 3.2E+02 0.0069 29.0 11.7 36 381-421 20-55 (228)
411 TIGR02964 xanthine_xdhC xanthi 39.8 1.1E+02 0.0025 33.1 8.3 85 380-485 98-183 (246)
412 PRK06940 short chain dehydroge 39.8 69 0.0015 34.8 6.7 80 643-732 2-86 (275)
413 PRK01710 murD UDP-N-acetylmura 39.8 58 0.0013 38.5 6.6 34 643-679 14-47 (458)
414 PRK05597 molybdopterin biosynt 39.8 3E+02 0.0064 31.6 12.1 36 381-421 27-62 (355)
415 PRK09599 6-phosphogluconate de 39.7 3.5E+02 0.0075 30.0 12.4 68 384-470 2-69 (301)
416 PRK10750 potassium transporter 39.6 90 0.002 37.4 8.0 38 296-334 190-227 (483)
417 PRK12746 short chain dehydroge 39.5 2E+02 0.0043 30.4 10.1 82 643-732 6-100 (254)
418 PF02826 2-Hacid_dh_C: D-isome 39.4 42 0.0009 34.3 4.6 37 641-680 34-70 (178)
419 cd00401 AdoHcyase S-adenosyl-L 39.3 1.7E+02 0.0037 34.4 10.1 98 369-499 189-286 (413)
420 PRK06198 short chain dehydroge 39.3 1E+02 0.0022 32.7 7.9 80 382-469 6-93 (260)
421 PRK07102 short chain dehydroge 39.2 1.6E+02 0.0034 31.0 9.2 80 644-731 2-85 (243)
422 PRK09242 tropinone reductase; 39.2 90 0.002 33.2 7.4 83 643-732 9-98 (257)
423 PRK07576 short chain dehydroge 39.1 2.3E+02 0.0051 30.3 10.7 78 643-731 9-95 (264)
424 PRK05854 short chain dehydroge 39.1 84 0.0018 35.0 7.4 80 643-731 14-102 (313)
425 PRK07890 short chain dehydroge 39.1 70 0.0015 33.9 6.6 81 643-732 5-92 (258)
426 TIGR00328 flhB flagellar biosy 39.1 4.2E+02 0.009 30.5 12.9 52 254-309 106-157 (347)
427 PRK12746 short chain dehydroge 38.9 1.1E+02 0.0024 32.2 8.1 80 383-470 7-100 (254)
428 PRK07775 short chain dehydroge 38.9 2.5E+02 0.0053 30.3 10.9 81 643-732 10-97 (274)
429 PF02719 Polysacc_synt_2: Poly 38.9 40 0.00087 37.6 4.6 80 385-469 1-86 (293)
430 PRK14620 NAD(P)H-dependent gly 38.7 50 0.0011 37.0 5.6 39 384-428 2-40 (326)
431 PRK12721 secretion system appa 38.7 5E+02 0.011 29.8 13.5 52 254-309 106-157 (349)
432 PRK06947 glucose-1-dehydrogena 38.6 1.1E+02 0.0024 32.2 7.9 80 382-469 2-89 (248)
433 PRK08226 short chain dehydroge 38.6 96 0.0021 33.0 7.5 66 382-456 6-72 (263)
434 PRK12827 short chain dehydroge 38.6 1E+02 0.0022 32.2 7.7 80 382-469 6-96 (249)
435 PRK05786 fabG 3-ketoacyl-(acyl 38.6 1.1E+02 0.0024 31.9 7.9 79 382-469 5-90 (238)
436 COG2242 CobL Precorrin-6B meth 38.6 4.3E+02 0.0094 27.6 11.7 117 380-516 33-153 (187)
437 PRK08217 fabG 3-ketoacyl-(acyl 38.6 84 0.0018 33.0 7.0 80 643-731 5-91 (253)
438 COG0300 DltE Short-chain dehyd 38.6 69 0.0015 35.3 6.3 84 641-732 4-94 (265)
439 PRK05650 short chain dehydroge 38.5 2.2E+02 0.0047 30.6 10.3 79 645-732 2-87 (270)
440 cd01487 E1_ThiF_like E1_ThiF_l 38.5 1.4E+02 0.003 30.6 8.2 33 384-421 1-33 (174)
441 PRK05693 short chain dehydroge 38.5 2.2E+02 0.0048 30.6 10.4 74 644-732 2-82 (274)
442 PRK07201 short chain dehydroge 38.4 97 0.0021 38.2 8.5 78 645-731 2-86 (657)
443 PRK05565 fabG 3-ketoacyl-(acyl 38.3 1.8E+02 0.004 30.3 9.5 81 643-732 5-93 (247)
444 PRK10675 UDP-galactose-4-epime 38.3 86 0.0019 34.9 7.4 80 384-470 2-83 (338)
445 PRK13940 glutamyl-tRNA reducta 38.2 76 0.0017 37.2 7.1 72 382-470 181-252 (414)
446 PRK12744 short chain dehydroge 38.2 2.3E+02 0.0049 30.1 10.3 83 643-732 8-99 (257)
447 TIGR01035 hemA glutamyl-tRNA r 38.2 66 0.0014 37.7 6.6 71 382-470 180-250 (417)
448 PF13241 NAD_binding_7: Putati 38.1 25 0.00053 32.7 2.5 34 642-678 6-39 (103)
449 PRK07069 short chain dehydroge 38.1 1.1E+02 0.0024 32.1 7.9 79 385-469 2-88 (251)
450 PRK12468 flhB flagellar biosyn 38.1 4.6E+02 0.01 30.6 13.2 53 254-310 113-165 (386)
451 COG1893 ApbA Ketopantoate redu 38.1 1.5E+02 0.0032 33.4 9.1 75 383-470 1-77 (307)
452 PLN02260 probable rhamnose bio 38.1 89 0.0019 38.8 8.1 83 643-732 6-90 (668)
453 PRK06841 short chain dehydroge 38.0 1.8E+02 0.0039 30.7 9.5 78 643-732 15-99 (255)
454 PRK05866 short chain dehydroge 38.0 80 0.0017 34.8 7.0 81 643-732 40-127 (293)
455 PRK00045 hemA glutamyl-tRNA re 37.9 73 0.0016 37.4 6.9 71 382-470 182-252 (423)
456 PRK06125 short chain dehydroge 37.8 2.1E+02 0.0046 30.4 10.1 82 643-732 7-91 (259)
457 PRK00094 gpsA NAD(P)H-dependen 37.8 1.4E+02 0.003 33.2 8.9 40 383-428 2-41 (325)
458 PRK07023 short chain dehydroge 37.7 83 0.0018 33.1 6.8 60 383-455 2-62 (243)
459 PRK06197 short chain dehydroge 37.6 1.7E+02 0.0037 32.2 9.5 84 642-732 15-105 (306)
460 PRK05855 short chain dehydroge 37.3 94 0.002 37.3 8.0 81 381-469 314-401 (582)
461 PLN02602 lactate dehydrogenase 37.3 2.4E+02 0.0051 32.4 10.7 76 383-470 38-115 (350)
462 PRK08177 short chain dehydroge 37.3 78 0.0017 33.0 6.5 73 383-468 2-79 (225)
463 PRK07041 short chain dehydroge 37.2 91 0.002 32.4 7.0 75 386-469 1-78 (230)
464 PRK07806 short chain dehydroge 37.2 1.1E+02 0.0024 32.2 7.7 78 383-468 7-92 (248)
465 TIGR02622 CDP_4_6_dhtase CDP-g 37.2 90 0.0019 35.2 7.3 78 383-469 5-84 (349)
466 PRK03612 spermidine synthase; 37.1 2.8E+02 0.0061 33.6 11.9 81 381-470 297-383 (521)
467 PRK06935 2-deoxy-D-gluconate 3 37.1 2.6E+02 0.0056 29.7 10.6 79 643-732 15-101 (258)
468 PRK15116 sulfur acceptor prote 36.9 3.1E+02 0.0068 30.3 11.1 36 381-421 29-64 (268)
469 PRK07201 short chain dehydroge 36.9 96 0.0021 38.2 8.1 80 382-469 371-457 (657)
470 cd01483 E1_enzyme_family Super 36.9 1.1E+02 0.0025 29.7 7.1 31 645-678 1-32 (143)
471 PRK08226 short chain dehydroge 36.8 2.1E+02 0.0045 30.4 9.8 79 643-732 6-92 (263)
472 PRK13302 putative L-aspartate 36.8 3.1E+02 0.0068 30.1 11.2 71 383-470 7-77 (271)
473 PRK12828 short chain dehydroge 36.8 68 0.0015 33.3 5.9 76 643-731 7-91 (239)
474 PRK07889 enoyl-(acyl carrier p 36.7 70 0.0015 34.3 6.1 79 643-731 7-94 (256)
475 PRK14618 NAD(P)H-dependent gly 36.7 96 0.0021 34.8 7.4 40 383-428 5-44 (328)
476 PF01564 Spermine_synth: Sperm 36.6 1.1E+02 0.0023 33.2 7.5 82 381-470 76-160 (246)
477 PRK06181 short chain dehydroge 36.5 85 0.0019 33.4 6.7 78 644-732 2-88 (263)
478 PRK04148 hypothetical protein; 36.5 82 0.0018 31.1 5.9 69 643-730 17-85 (134)
479 PRK06114 short chain dehydroge 36.2 1E+02 0.0023 32.7 7.3 79 643-732 8-96 (254)
480 PRK08642 fabG 3-ketoacyl-(acyl 36.2 1.2E+02 0.0025 32.0 7.7 78 643-731 5-90 (253)
481 COG0168 TrkG Trk-type K+ trans 36.2 88 0.0019 37.7 7.3 26 306-331 191-216 (499)
482 PRK12935 acetoacetyl-CoA reduc 36.1 1.2E+02 0.0026 31.8 7.8 81 382-470 6-94 (247)
483 PRK12481 2-deoxy-D-gluconate 3 36.0 1.4E+02 0.003 31.9 8.2 63 383-456 9-73 (251)
484 PRK05872 short chain dehydroge 35.9 2.9E+02 0.0062 30.3 10.9 79 643-732 9-95 (296)
485 PRK12742 oxidoreductase; Provi 35.9 2.7E+02 0.006 28.8 10.4 77 643-732 6-85 (237)
486 PRK08642 fabG 3-ketoacyl-(acyl 35.8 1.2E+02 0.0027 31.8 7.8 63 383-456 6-70 (253)
487 PRK06483 dihydromonapterin red 35.7 3.4E+02 0.0073 28.3 11.0 76 643-732 2-84 (236)
488 PRK05653 fabG 3-ketoacyl-(acyl 35.6 1.1E+02 0.0024 31.7 7.4 81 643-732 5-92 (246)
489 PRK12937 short chain dehydroge 35.6 2.1E+02 0.0046 29.8 9.5 82 643-732 5-93 (245)
490 TIGR01915 npdG NADPH-dependent 35.6 3.5E+02 0.0076 28.4 11.1 40 384-429 2-42 (219)
491 PRK06484 short chain dehydroge 35.4 1.1E+02 0.0023 36.6 7.9 76 383-469 6-88 (520)
492 PRK11749 dihydropyrimidine deh 35.4 48 0.001 39.1 4.9 35 641-678 138-172 (457)
493 PRK06179 short chain dehydroge 35.1 68 0.0015 34.4 5.7 73 643-732 4-83 (270)
494 PRK07814 short chain dehydroge 35.0 2.2E+02 0.0048 30.4 9.7 80 643-731 10-96 (263)
495 PRK06947 glucose-1-dehydrogena 35.0 1E+02 0.0022 32.5 7.0 82 643-732 2-90 (248)
496 PF10727 Rossmann-like: Rossma 34.9 96 0.0021 30.2 6.0 70 642-732 9-78 (127)
497 PRK11064 wecC UDP-N-acetyl-D-m 34.8 1.3E+02 0.0029 35.2 8.4 39 383-427 4-42 (415)
498 PRK05884 short chain dehydroge 34.8 77 0.0017 33.3 5.9 73 645-731 2-78 (223)
499 PRK08628 short chain dehydroge 34.8 1.2E+02 0.0026 32.2 7.5 79 643-732 7-93 (258)
500 PRK08085 gluconate 5-dehydroge 34.7 1.3E+02 0.0028 31.9 7.7 81 643-732 9-96 (254)
No 1
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=100.00 E-value=4.6e-36 Score=349.34 Aligned_cols=427 Identities=16% Similarity=0.156 Sum_probs=330.8
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+||+|||+|..+..+++.|... ++.|+++|.+++..+...+ ..++.++.||+++.+.|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4899999999999999999753 5788999999887776432 13578899999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCC---HHHH--HHcCCCeEEEeccHHHHHHHHHHHHc
Q 002475 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (917)
Q Consensus 463 aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~---~~~l--~~~Gad~VevV~~~el~a~lLa~~~~ 537 (917)
.+|+++++ |..|+.+++.+|.++| ..++|+++.+.++ ...+ +.+|++. +|.|+.+.+..|++.+.
T Consensus 68 ~vi~~~~~------~~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~~~l~~~~~~G~~~--vi~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTDS------DETNMVACQIAKSLFG--APTTIARVRNPEYAEYDKLFSKEALGIDL--LISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecCC------hHHHHHHHHHHHHhcC--CCeEEEEECCccccchhhhhhhhcCCccE--EECHHHHHHHHHHHHhc
Confidence 99999966 8899999999999977 4579999988776 3333 6689997 58999999999999999
Q ss_pred CCcHHHHHHHHhcC--CCceEEEecCCccCCCcHHhHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEE
Q 002475 538 QPGLAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIA 613 (917)
Q Consensus 538 ~Pg~~~vl~~Ll~~--~g~ei~v~~~p~l~G~tf~el~~~-~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa 613 (917)
.|+...++. +.+. .-.++.+.+.+++.|+++.|+..+ . .++.++++.| +|+ .+.|.++++|++||+|+++|
T Consensus 138 ~~~~~~~~~-~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~g 212 (453)
T PRK09496 138 YPGALDVEE-FADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFIG 212 (453)
T ss_pred CCCceEeee-ecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEEe
Confidence 999876643 1111 112444555678999999999865 3 5899999987 455 46899999999999999999
Q ss_pred eCCCccCCCCCccchhccccccCCCCCCCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCC
Q 002475 614 EDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD 693 (917)
Q Consensus 614 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~ 693 (917)
+.++..++... . .......+|++|||||+.|..+++.|.+. |.++++++.++ ++.+.+.+.
T Consensus 213 ~~~~l~~~~~~---~--------~~~~~~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~~--~~~~~~~~~--- 273 (453)
T PRK09496 213 AREHIRAVMSE---F--------GRLEKPVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERDP--ERAEELAEE--- 273 (453)
T ss_pred CHHHHHHHHHH---h--------CccCCCCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCH--HHHHHHHHH---
Confidence 99876554321 1 11224579999999999999999999864 78899999754 566666542
Q ss_pred ccCcCCceEEEEEcCcCCHhHHhcCCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCcccccc
Q 002475 694 ISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLS 773 (917)
Q Consensus 694 ~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~ 773 (917)
+.+ +.++.||+++++.|+++++++||++|++++ +|..|+.+.+++|.++.+
T Consensus 274 ---~~~--~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~---------~~~~n~~~~~~~~~~~~~--------------- 324 (453)
T PRK09496 274 ---LPN--TLVLHGDGTDQELLEEEGIDEADAFIALTN---------DDEANILSSLLAKRLGAK--------------- 324 (453)
T ss_pred ---CCC--CeEEECCCCCHHHHHhcCCccCCEEEECCC---------CcHHHHHHHHHHHHhCCC---------------
Confidence 223 456899999999999999999999999875 367899999999988643
Q ss_pred CCCcchhHHHhhhcCCcceEEEEEecccccchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHcc--cCceEEE
Q 002475 774 GFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE--EGNEMCI 851 (917)
Q Consensus 774 ~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~~--eG~el~i 851 (917)
+++++..++++...++..|++.++.+..+.+..+++....|++..++. +.+. +..++.+
T Consensus 325 ------------------~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v 385 (453)
T PRK09496 325 ------------------KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRGDIVAVHS-LRRGAAEAIEAVA 385 (453)
T ss_pred ------------------eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhccchhhhhh-hcCCcEEEEEEEe
Confidence 688999999999999988866555566777899999999999877664 2211 1122332
Q ss_pred EcCcccccCCCCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecCC
Q 002475 852 KPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSGD 917 (917)
Q Consensus 852 ~~~~~~~~~~~~ltf~~l~~~~r~~g~ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~~ 917 (917)
.+-+. -.+.++.++. ...|..++|+.+.+ +. ++|++ ++++++||+|++++..+
T Consensus 386 ~~~s~----~~g~~l~el~---l~~~~~i~~i~r~~--~~-~~p~~---~~~l~~gD~l~v~~~~~ 438 (453)
T PRK09496 386 HETSK----VVGKPLKDLK---LPKGVLIGAIVRGG--EV-IIPTG---DTVIEPGDHVIVFVLDK 438 (453)
T ss_pred CCCCh----hccCCHHHcC---CCCCCEEEEEEECC--EE-EcCCC---CcEECCCCEEEEEEcCc
Confidence 22222 2356667762 24599999998854 44 77876 89999999999999753
No 2
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=343.01 Aligned_cols=601 Identities=17% Similarity=0.243 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcC-------------CCHHHHHHHHHHhhhccCCCCCc-CCccCeeeeehhhhhhHHH
Q 002475 288 LLALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLI 353 (917)
Q Consensus 288 ll~ll~~~l~lil~g~~~~~~~e~-------------~s~~dAly~~~~tvTTvGygd~~-~t~~gRi~~v~lil~Gi~i 353 (917)
+..|+.+.+.+.+.++.+.+.+|+ .++++++|+.++|++||||||.- .+..||+|.++++++|+++
T Consensus 250 l~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glam 329 (1103)
T KOG1420|consen 250 LVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAM 329 (1103)
T ss_pred HHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHH
Confidence 344444555566666666666652 57899999999999999999985 7889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCc-ccccccCeEEEEeccc--hHHHHHHHHHHhcccCCCCceEEEE-cCChH-HHHHHH
Q 002475 354 FAMMLGLVSDAISEKVDSLRKGK-SEVIEKNHILILGWSD--KLGSLLKQLAVANKSIGGGVIVVLA-ERDKE-EMEMDI 428 (917)
Q Consensus 354 ~a~~ig~i~~~i~~~~~~lr~G~-~~~~~~~HIII~G~g~--~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e-~~e~~l 428 (917)
|+..+.-|.+.+.++- ++. |. .....+.||||||+-. .+..+++.+.+.+.. .-+..||.. ...|+ ++|.+.
T Consensus 330 fasyvpeiielignr~-kyg-geyk~ehgkkhivvcghityesvshflkdflhedrd-dvdvevvflhr~~pdleleglf 406 (1103)
T KOG1420|consen 330 FASYVPEIIELIGNRK-KYG-GEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRD-DVDVEVVFLHRISPDLELEGLF 406 (1103)
T ss_pred HHhhhHHHHHHHcccc-ccC-ceeehhcCCeeEEEecceeHHHHHHHHHHHhhcccc-ccceEEEEEecCCCCcchHHHH
Confidence 9999998888887641 111 21 1346789999999874 367778877765431 123344444 33443 344433
Q ss_pred HhhccccCCccEEEEEECCCCHHHHhccCcccccEEEEecCC--CCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCC
Q 002475 429 AKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD 506 (917)
Q Consensus 429 ~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~aVIilt~d--~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e 506 (917)
.+ .-..|.+.+|..+++.+|.|+.+++||++.++++. .+++.+|+.||+.++++|++.| +.++|.++..-.
T Consensus 407 kr-----hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys~--dirvi~qlmqyh 479 (1103)
T KOG1420|consen 407 KR-----HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSP--DIRVITQLMQYH 479 (1103)
T ss_pred hh-----heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCCC--chhHHHHHHHhh
Confidence 22 23679999999999999999999999999999998 5889999999999999999998 456888887777
Q ss_pred CHHHHHHc------CCCeEEEeccHHHHHHHHHHHHcCCcHHHHHHHHhcC-------------------CCceEEEecC
Q 002475 507 NEPLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF-------------------ENAEFYIKRW 561 (917)
Q Consensus 507 ~~~~l~~~------Gad~VevV~~~el~a~lLa~~~~~Pg~~~vl~~Ll~~-------------------~g~ei~v~~~ 561 (917)
|+.++... .+|. +||-.++.-..+||+|+.||+++.+.+|+.- .|.|.|.+..
T Consensus 480 nkayllnipswdwk~gdd--viclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~l 557 (1103)
T KOG1420|consen 480 NKAYLLNIPSWDWKEGDD--VICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYL 557 (1103)
T ss_pred chheeecCCCcccccCCc--eEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhc
Confidence 76665332 2343 4888999999999999999999999999742 1357777665
Q ss_pred -CccCCCcHHhHhhh-C--CCeEEEEEEEeec---CCeEEeCCCCCceecCCCEEEEEEeCCCccCCC-----------C
Q 002475 562 -PQLDDLRFEEVVIS-F--PDAIPCGIKVAAE---GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG-----------P 623 (917)
Q Consensus 562 -p~l~G~tf~el~~~-~--~~~ivIGI~r~~~---~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~~-----------~ 623 (917)
|.|+|++|.++... | .+..+++|.-.++ +.++.+||.....|++|..-++||.+.+..+.+ .
T Consensus 558 sp~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddik 637 (1103)
T KOG1420|consen 558 SPAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIK 637 (1103)
T ss_pred CHhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhccc
Confidence 57999999887654 3 3577888875422 345889999999999999999999875532210 0
Q ss_pred Cccchhc---------------------------------cccccC-----C----------------------------
Q 002475 624 LPEVVCK---------------------------------RSFLKI-----P---------------------------- 637 (917)
Q Consensus 624 ~~~~i~~---------------------------------~~~~~~-----~---------------------------- 637 (917)
-+..|.+ ..++.. +
T Consensus 638 d~~likkckckn~k~~q~~~ls~~~k~~ngg~k~~p~~sp~~~r~~ts~~~g~~~~~~f~~~~mkydstgmfhwcp~k~l 717 (1103)
T KOG1420|consen 638 DPKLIKKCKCKNLKDEQPSTLSPKKKQRNGGMKNSPNTSPKLMRHDTSLIPGNDQIDNFDSHVMKYDSTGMFHWCPPKEL 717 (1103)
T ss_pred CHHHHHhcCCCcccccCchhcCccccCCCCCccCCCCCCHHHhcCCcccCCCCcchhhhhhhhhccccccceeecCchhH
Confidence 0000000 000000 0
Q ss_pred ----------CCCCCCCeEEEEccccCHH------HHHHHHHHhc---CCCCeEEEEccCChHHHHHHhhcCCCCccCcC
Q 002475 638 ----------DPPKYPEKILFCGWRRDID------DMIMVLEAFL---APGSELWMLNEVPEKEREKKLTDGGLDISGLM 698 (917)
Q Consensus 638 ----------~~~~~~~hilI~Gwg~~~~------~li~~L~~~~---~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~ 698 (917)
.-.-..+|+++|=+++.-. .++.-|.+.. ..=.+++++.... . ..++++. ...+|
T Consensus 718 edcil~r~qaamtvlnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsie-y-lrrewkt----l~nlp 791 (1103)
T KOG1420|consen 718 EDCILTRSQAAMTVLNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIE-Y-LRREWKT----LHNLP 791 (1103)
T ss_pred HHHhhhhhHhhheeecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccHH-H-HHHHHHH----HhCCC
Confidence 0001366999998887532 3444443210 0113577776531 1 2222221 11344
Q ss_pred CceEEEEEcCcCCHhHHhcCCCCCccEEEEecCCC-CcCccccCcHHHHHHHHHHHHhcccCC----CCCCCCCcccccc
Q 002475 699 NIKLVHREGNAVIRRHLESLPLETFDSILILADES-LEDSIVHSDSRSLATLLLIRDIQSKRL----PYRDTKPTSLRLS 773 (917)
Q Consensus 699 ~~~v~~i~GD~t~~~~L~~a~Ie~adavIilsd~~-~~~~~~~~Da~~l~t~L~~r~l~~~~~----~~~~~~~~~~~~~ 773 (917)
. +.+++|.|.++.+|+.++|.-+|.++|++..- ..+++.-+|.+.+++.|-+|.++-+.+ +.+.+...|....
T Consensus 792 k--isilngsplsradlravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp 869 (1103)
T KOG1420|consen 792 K--ISILNGSPLSRADLRAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSP 869 (1103)
T ss_pred c--eeecCCCCCchhhhhhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCC
Confidence 4 56789999999999999999999999998753 345778899999999999999886532 2222222211100
Q ss_pred CCCcchhHHHhhh----cCCcceEEEEEecccccchhhccCCCc-----EEe---------cHHHHHHHHHHHHhhhhHH
Q 002475 774 GFSHSSWIREMQQ----ASDKSIIISEILDSRTRNLVSVSRISD-----YVL---------SNELVSMALAMVAEDKQIN 835 (917)
Q Consensus 774 ~~s~~~~i~kl~r----a~~~~~Iv~Ei~d~~~~~ll~~~~~~d-----~V~---------S~~lv~~~LA~~a~~p~i~ 835 (917)
--|.. .++| -+.++.+|+|+.+..|.+.+.+...+| |+. .-.+...+|.....+....
T Consensus 870 ~gspi----~lq~~g~~~g~nvpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnal 945 (1103)
T KOG1420|consen 870 DGSPI----HLQQPGITTGVNVPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNAL 945 (1103)
T ss_pred CCCCe----EEecCCcccccCchhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHH
Confidence 00110 1232 244588999999999999998864332 211 2233456666666666666
Q ss_pred HHHHHHHcc-----------cCc----------------eEEEEcCcccc----cCCCCccHHHHHHHhccC-CcEEEE-
Q 002475 836 RVLEELFAE-----------EGN----------------EMCIKPAEFYL----FDQEEISFFDIMIRGRQR-QEIVIG- 882 (917)
Q Consensus 836 ~vl~eLl~~-----------eG~----------------el~i~~~~~~~----~~~~~ltf~~l~~~~r~~-g~ivIG- 882 (917)
.++..|.+. ||. .+.+-+++.+- .-+.+-+|++++..+.++ |-+|||
T Consensus 946 tlirtlvtggatpelelilaegaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlcigl 1025 (1103)
T KOG1420|consen 946 TLIRTLVTGGATPELELILAEGAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGL 1025 (1103)
T ss_pred HHHHHHHhCCCChhhHHHHhccccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEE
Confidence 666655432 111 12222333321 115677999999888766 999999
Q ss_pred EEeCCCC---------cEEECCCCCCCCCeecCCCEEEEEec
Q 002475 883 YRLANTE---------RAIINPSQKSEPRKWSLDDVFVVISS 915 (917)
Q Consensus 883 ~~~~~g~---------~~iiNP~~k~~~~~l~~gD~LIVi~~ 915 (917)
||..+.. .++.|||. ++.+.+.|.++|+-.
T Consensus 1026 yrlrd~~~s~~~s~kryvitnpp~---ef~l~ptd~vfvlmq 1064 (1103)
T KOG1420|consen 1026 YRLRDAHLSTSQSTKRYVITNPPY---EFELVPTDLVFVLMQ 1064 (1103)
T ss_pred eeeeccccCcchhhceeEecCCch---hheecccceEEEEEe
Confidence 6665531 27899998 899999999999865
No 3
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=2e-29 Score=285.94 Aligned_cols=233 Identities=20% Similarity=0.238 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHHHH
Q 002475 291 LLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD 363 (917)
Q Consensus 291 ll~~~l~lil~g~~~~~~~e~------~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~ 363 (917)
.++.+..+++.|+++++++++ .+++|||||+++|+||+||||. |.+..||+|+++++++|+++|++.++.++.
T Consensus 140 ~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 140 AVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456667777777777764 6999999999999999999998 578889999999999999999999887765
Q ss_pred -HHHHHHHhhhcCcc-cccccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEE
Q 002475 364 -AISEKVDSLRKGKS-EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI 441 (917)
Q Consensus 364 -~i~~~~~~lr~G~~-~~~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~ 441 (917)
.+.+++++..+++. ....+||+||||||+.+..++++|.+. +..|+++|.|+. ++.. ..++.
T Consensus 220 p~i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~~--~~~~--------~~g~~ 283 (393)
T PRK10537 220 PVIRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLGL--EHRL--------PDDAD 283 (393)
T ss_pred HHHHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHC------CCCEEEEECchh--hhhc--------cCCCc
Confidence 44445555333332 234589999999999999999999642 467888887642 2221 23567
Q ss_pred EEEECCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEE
Q 002475 442 CRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIET 521 (917)
Q Consensus 442 ~i~Gd~~d~e~L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~Vev 521 (917)
++.||++++++|++||+++|+++|+++++ |++|+.+++++|+++| +.++||++.++++.++++.+|+|. +
T Consensus 284 vI~GD~td~e~L~~AgI~~A~aVI~~t~d------D~~Nl~ivL~ar~l~p--~~kIIa~v~~~~~~~~L~~~GaD~--V 353 (393)
T PRK10537 284 LIPGDSSDSAVLKKAGAARARAILALRDN------DADNAFVVLAAKEMSS--DVKTVAAVNDSKNLEKIKRVHPDM--I 353 (393)
T ss_pred EEEeCCCCHHHHHhcCcccCCEEEEcCCC------hHHHHHHHHHHHHhCC--CCcEEEEECCHHHHHHHHhcCCCE--E
Confidence 89999999999999999999999999976 9999999999999998 567999999999999999999998 5
Q ss_pred eccHHHHHHHHHHHHcCCcHH-HHHHHHh
Q 002475 522 VVAHDVIGRLMIQCALQPGLA-QIWEDIL 549 (917)
Q Consensus 522 V~~~el~a~lLa~~~~~Pg~~-~vl~~Ll 549 (917)
|+|.++.++.|++.+..+.+. +.+.+++
T Consensus 354 Isp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 354 FSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred ECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999999876654 4555555
No 4
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.93 E-value=4e-25 Score=215.82 Aligned_cols=199 Identities=50% Similarity=0.827 Sum_probs=170.4
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHcCCc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg 540 (917)
|++||+++.+++++++|+++++.+|++..+..+...|+||++.+.+++++++..|+..|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999999999999999999999999887777899999999999999999999999887 8999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEecCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccC
Q 002475 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (917)
Q Consensus 541 ~~~vl~~Ll~~~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~ 620 (917)
+.++|+++++++.++||+..||.+.|++|.++.+.|+++++|||.| +|++.+||++++++++||+++|||+.+...+
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999997 5899999999999999999999999876422
Q ss_pred CCCCccchhccccccCCCCCCCCCeEEEEccccCHHHHHHHHHHhcCCC
Q 002475 621 PGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPG 669 (917)
Q Consensus 621 ~~~~~~~i~~~~~~~~~~~~~~~~hilI~Gwg~~~~~li~~L~~~~~~g 669 (917)
-..++. +.. +.. ..++...+.++|+|..+...++....+.+..+
T Consensus 156 ~~~~~~-v~~---~n~-~~~~~~~~~~~e~~k~rl~nivkrp~kslsk~ 199 (206)
T PF06241_consen 156 QTAYPS-VRM---ENI-TSPEDVRKHAFELWKTRLENIVKRPNKSLSKG 199 (206)
T ss_pred eEeccc-ccc---ccc-cCCCchhhhhhhhhHhHHHHHHhCcccccccc
Confidence 111221 111 111 12234556789999999999998877654433
No 5
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.4e-22 Score=223.64 Aligned_cols=319 Identities=13% Similarity=0.166 Sum_probs=229.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc-----CCCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHH
Q 002475 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMML 358 (917)
Q Consensus 285 ~~~ll~ll~~~l~lil~g~~~~~~~e-----~~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~i 358 (917)
+++++.|...++++++.|.+..-.+. ..++|.++|++++|++||||||. |.-|+.++..++++.+.++++.-.+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 34555555567788888887776663 37899999999999999999997 4557888888888888777766554
Q ss_pred HHHHHHHHHHHHhhhcCcc--cc-cccCeEEEEeccc---hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHh-h
Q 002475 359 GLVSDAISEKVDSLRKGKS--EV-IEKNHILILGWSD---KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK-L 431 (917)
Q Consensus 359 g~i~~~i~~~~~~lr~G~~--~~-~~~~HIII~G~g~---~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~-~ 431 (917)
--+...-. ++-+.|.. .. ....|||||--.- ....+++|+.. +... ....||+.. |.+++...+- +
T Consensus 264 ~~l~~tw~---erqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efya-hp~~-q~~~ivlls--p~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWS---ERQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYA-HPEN-QRIQIVLLS--PAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHH---HHhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhc-Cccc-ccEEEEEec--hHHhcchhhhhe
Confidence 44433222 22344432 22 2467999997653 34445555543 2212 233344432 2223222211 1
Q ss_pred ccccCCccEEEEEECCCCHHHHhccCcccccEEEEecCCC--CCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 002475 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (917)
Q Consensus 432 ~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~aVIilt~d~--~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~ 509 (917)
..++++.++.|++|+....++|+||++..|+++++++... +-...|+.+++..+++|.+.|+ ++-++++..+|.+-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapn--v~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPN--VKQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCc--hHHHhhhhchhhhh
Confidence 2456788999999999999999999999999999998773 3456799999999999999994 56788888888776
Q ss_pred HHHHcCCCeEEEeccHHHHHHHHHHHHcCCcHHHHHHHHhcC--------------------CCceEEEecC------Cc
Q 002475 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF--------------------ENAEFYIKRW------PQ 563 (917)
Q Consensus 510 ~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg~~~vl~~Ll~~--------------------~g~ei~v~~~------p~ 563 (917)
+.+.+ +. +||.+++.-.++|+.|.+||+++++.-|+.. .|+|+|-... .+
T Consensus 415 hi~~a--e~--~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIEHA--EV--LICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhhhh--ee--EEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 66643 34 5899999999999999999999999877742 1467775442 37
Q ss_pred cCCCcHHhHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 002475 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (917)
Q Consensus 564 l~G~tf~el~~~---~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~ 616 (917)
++|++|....+. .+|+-+||+.......++.+||++..++++.|.+|+++-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999887653 25899999974322345889999999999999999998654
No 6
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.2e-22 Score=209.77 Aligned_cols=214 Identities=19% Similarity=0.239 Sum_probs=180.3
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+.++|+|.|+.|..+++.|.. .++.|+++|.|++.+++.+.. ..++.+++||++++++|++||+++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 368999999999999999986 368999999999988875432 24688999999999999999999999
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHcCCcHH
Q 002475 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (917)
Q Consensus 463 aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg~~ 542 (917)
++|+++++ |..|+..|+.+++.+. .+++||++.++++.+.++..|++. +++|+...+..+++.+..|++.
T Consensus 69 ~vva~t~~------d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~~--ii~Pe~~~~~~l~~~i~~p~~~ 138 (225)
T COG0569 69 AVVAATGN------DEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGADV--IISPEKLAAKRLARLIVTPGAL 138 (225)
T ss_pred EEEEeeCC------CHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCcE--EECHHHHHHHHHHHHhcCCChh
Confidence 99999976 9999999988877443 367999999999999999999998 5999999999999999999999
Q ss_pred HHHHHHhcC-CCceEEEecCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccC
Q 002475 543 QIWEDILGF-ENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (917)
Q Consensus 543 ~vl~~Ll~~-~g~ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~ 620 (917)
+++...-+. +..++.+.+.+++.|++++|+..++ .++++++|.|. +...+.|.++++|++||+++++|..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~---~~~~~~p~g~~~l~~gD~l~v~~~~~~i~~ 215 (225)
T COG0569 139 DVLELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRG---GNELIIPRGDTTLEAGDRLIVIGAPEALRE 215 (225)
T ss_pred eEEeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecC---CCceecCCCCCEecCCCEEEEEEcHHHHHH
Confidence 987632111 1123444455689999999998655 58999999973 326789999999999999999999987765
Q ss_pred C
Q 002475 621 P 621 (917)
Q Consensus 621 ~ 621 (917)
+
T Consensus 216 ~ 216 (225)
T COG0569 216 V 216 (225)
T ss_pred H
Confidence 4
No 7
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.84 E-value=2e-19 Score=209.86 Aligned_cols=212 Identities=18% Similarity=0.209 Sum_probs=179.7
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
..+|+||||+|+.+..+++.|... ++.|+++|.+++..+...++ ..++.++.||+++.+.|+++++++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCcc
Confidence 479999999999999999998752 57899999999887765432 235778999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHcCCc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg 540 (917)
|+++|+++++ |..|+.+++.++++++ .++++++.++++.+.++.+|++. ++.|+.+.++.|++.+..|+
T Consensus 298 a~~vi~~~~~------~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~~--vi~p~~~~~~~~~~~~~~~~ 366 (453)
T PRK09496 298 ADAFIALTND------DEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGIDI--AISPRQATASEILRHVRRGD 366 (453)
T ss_pred CCEEEECCCC------cHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCCE--EECHHHHHHHHHHHHhhccc
Confidence 9999999976 8899999999999875 47999999999999999999997 58999999999999999999
Q ss_pred HHHHHHHHhcC--CCceEEEecCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC-
Q 002475 541 LAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD- 617 (917)
Q Consensus 541 ~~~vl~~Ll~~--~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~- 617 (917)
+..++. +... +..++.+.+.+++.|++++|+... .++.++++.| +|+. ++|+++++|++||+|+++|+.++
T Consensus 367 ~~~~~~-~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~~ 440 (453)
T PRK09496 367 IVAVHS-LRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKKF 440 (453)
T ss_pred hhhhhh-hcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcch
Confidence 877664 2221 234566667789999999999643 4899999997 4666 78999999999999999999998
Q ss_pred ccCC
Q 002475 618 TYAP 621 (917)
Q Consensus 618 ~~~~ 621 (917)
+.++
T Consensus 441 ~~~~ 444 (453)
T PRK09496 441 VPDV 444 (453)
T ss_pred HHHH
Confidence 6543
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.69 E-value=1e-15 Score=183.29 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=125.8
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.+||+||||+|+.+..++++|.+. +++|+++|+|+++++...+ .++.++.||++++++|+++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 479999999999999999999753 5799999999988876632 36789999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHcCCc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg 540 (917)
|++++++++| |.+|..++.++|+.+| ..+|+|+++++++.+.++.+|+|. +++|++..++.+++.+..|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~--~~~iiar~~~~~~~~~l~~~Gad~--vv~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRP--DIEIIARAHYDDEVAYITERGANQ--VVMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHcCCCE--EEChHHHHHHHHHHHhcCCC
Confidence 9999999976 7788888888899888 568999999999999999999998 59999999999999999999
Q ss_pred HHHHH
Q 002475 541 LAQIW 545 (917)
Q Consensus 541 ~~~vl 545 (917)
..++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 88764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.61 E-value=3e-14 Score=171.65 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=112.5
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.++|+||||+|+.+..+++.|... +++|+++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMAN------KMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhC------CCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 479999999999999999998753 5799999999998886532 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHH-HHHHHHHHHHc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHD-VIGRLMIQCAL 537 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~e-l~a~lLa~~~~ 537 (917)
|+++|++++| |+.|+.++..+|+++| +.+|+||++|+++.+.++.+|+|. +.++. ..+..+++.+.
T Consensus 465 A~~vv~~~~d------~~~n~~i~~~~r~~~p--~~~IiaRa~~~~~~~~L~~~Ga~~---vv~e~~es~l~l~~~~L 531 (601)
T PRK03659 465 AEAIVITCNE------PEDTMKIVELCQQHFP--HLHILARARGRVEAHELLQAGVTQ---FSRETFSSALELGRKTL 531 (601)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHhCCCCE---EEccHHHHHHHHHHHHH
Confidence 9999999977 9999999999999999 568999999999999999999997 33444 35555555443
No 10
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.1e-14 Score=149.48 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=155.4
Q ss_pred eEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002475 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (917)
Q Consensus 645 hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ad 724 (917)
+++|+|.|+.|..+++.|.+. |-.+++|+.+ +++++.... .....+.++||++++++|+++|+++||
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~d--~~~~~~~~~--------~~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE---GHNVVLIDRD--EERVEEFLA--------DELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC---CCceEEEEcC--HHHHHHHhh--------hhcceEEEEecCCCHHHHHhcCCCcCC
Confidence 689999999999999999864 7889999974 467666322 123357789999999999999999999
Q ss_pred EEEEecCCCCcCccccCcHHHHHHHHHHHH-hcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEeccccc
Q 002475 725 SILILADESLEDSIVHSDSRSLATLLLIRD-IQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTR 803 (917)
Q Consensus 725 avIilsd~~~~~~~~~~Da~~l~t~L~~r~-l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~~~ 803 (917)
++|+++++ |..|+..++++++ ++.+ ++++.+.++.+.
T Consensus 69 ~vva~t~~---------d~~N~i~~~la~~~~gv~---------------------------------~viar~~~~~~~ 106 (225)
T COG0569 69 AVVAATGN---------DEVNSVLALLALKEFGVP---------------------------------RVIARARNPEHE 106 (225)
T ss_pred EEEEeeCC---------CHHHHHHHHHHHHhcCCC---------------------------------cEEEEecCHHHH
Confidence 99999964 5567666666655 5543 689999999999
Q ss_pred chhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHcccCceEEEEcCcccccCCCCccHHHHHHHhccCCcEEEEE
Q 002475 804 NLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGY 883 (917)
Q Consensus 804 ~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~~l~~~~r~~g~ivIG~ 883 (917)
+.++..|+...+.+....+..+++....|++.+++. +.+.+...+.+.-.+. .+..+.+-.|+.. -...+.+++++
T Consensus 107 ~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~-~~~~~~~~~~~~v~~~--~~~~g~~L~el~~-~~~~~~~vvai 182 (225)
T COG0569 107 KVLEKLGADVIISPEKLAAKRLARLIVTPGALDVLE-LAGGDAEVIEEKVAED--SPLAGKTLRELDL-RLPYDVNVIAI 182 (225)
T ss_pred HHHHHcCCcEEECHHHHHHHHHHHHhcCCChheEEe-ecCCcceEEEEEecCC--CccCCcCHHHhcc-cCCCCcEEEEE
Confidence 999988866666666777999999999999988775 3322222233322221 1224566677752 12358999999
Q ss_pred EeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 884 RLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 884 ~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
.+.+. ..+.|++ ++++++||++++++..
T Consensus 183 ~r~~~--~~~~p~g---~~~l~~gD~l~v~~~~ 210 (225)
T COG0569 183 KRGGN--ELIIPRG---DTTLEAGDRLIVIGAP 210 (225)
T ss_pred ecCCC--ceecCCC---CCEecCCCEEEEEEcH
Confidence 99764 3677886 9999999999999874
No 11
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.58 E-value=1.4e-14 Score=137.38 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=100.7
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccEE
Q 002475 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (917)
Q Consensus 385 III~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~aV 464 (917)
|||||||+.+..++++|... +..|+++|.|++..+.+.+ .++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEE
Confidence 79999999999999999862 3689999999988887654 247789999999999999999999999
Q ss_pred EEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEecc
Q 002475 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVA 524 (917)
Q Consensus 465 Iilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~ 524 (917)
|+++++ |..|+.+++.+|+++| ..++++++.++++.+.++.+|+|.| |.|
T Consensus 67 v~~~~~------d~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~l~~~g~d~v--i~P 116 (116)
T PF02254_consen 67 VILTDD------DEENLLIALLARELNP--DIRIIARVNDPENAELLRQAGADHV--ISP 116 (116)
T ss_dssp EEESSS------HHHHHHHHHHHHHHTT--TSEEEEEESSHHHHHHHHHTT-SEE--EEH
T ss_pred EEccCC------HHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHCCcCEE--ECc
Confidence 999976 9999999999999998 5789999999999999999999984 544
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.57 E-value=1e-13 Score=167.52 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=111.8
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.++|+||||+|+.+..+++.|.+. +..++++|.|+++++...+ .+..++.||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhC------CCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 469999999999999999988753 5789999999999887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~ 537 (917)
|+.+|++++| |+.|+.++..+|+++| +.+|+||.+|.++.+.++.+|+|.+ +......+..+++.+.
T Consensus 465 A~~vvv~~~d------~~~n~~i~~~ar~~~p--~~~iiaRa~d~~~~~~L~~~Gad~v--~~e~~e~sl~l~~~~L 531 (621)
T PRK03562 465 AEVLINAIDD------PQTSLQLVELVKEHFP--HLQIIARARDVDHYIRLRQAGVEKP--ERETFEGALKSGRLVL 531 (621)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHCCCCEE--ehhhHhHHHHHHHHHH
Confidence 9999999977 9999999999999999 4579999999999999999999974 3333334555555443
No 13
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.45 E-value=3.5e-13 Score=153.66 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=114.1
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
.++|++|||||+.+..++++|.+. |.++++++++.. +...+ ++ +.+++||++++++|+++|++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~---g~~vvVId~d~~----~~~~~--------~g--~~vI~GD~td~e~L~~AgI~ 301 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQR---GQAVTVIVPLGL----EHRLP--------DD--ADLIPGDSSDSAVLKKAGAA 301 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHC---CCCEEEEECchh----hhhcc--------CC--CcEEEeCCCCHHHHHhcCcc
Confidence 378999999999999999999764 678999985421 11111 12 35789999999999999999
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEeccc
Q 002475 722 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSR 801 (917)
Q Consensus 722 ~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~ 801 (917)
+|+++|++++ +|++|+.+++++|+++++ ++|+++..+++
T Consensus 302 ~A~aVI~~t~---------dD~~Nl~ivL~ar~l~p~--------------------------------~kIIa~v~~~~ 340 (393)
T PRK10537 302 RARAILALRD---------NDADNAFVVLAAKEMSSD--------------------------------VKTVAAVNDSK 340 (393)
T ss_pred cCCEEEEcCC---------ChHHHHHHHHHHHHhCCC--------------------------------CcEEEEECCHH
Confidence 9999999885 478999999999999976 37999999999
Q ss_pred ccchhhccCCCcEEecHHHHHHHHHHHHhhhhHH-HHHHHHH
Q 002475 802 TRNLVSVSRISDYVLSNELVSMALAMVAEDKQIN-RVLEELF 842 (917)
Q Consensus 802 ~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~-~vl~eLl 842 (917)
+.+.++++|++.+|.+.++.++.|++.+..+.++ +.+.+++
T Consensus 341 ~~~~L~~~GaD~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 341 NLEKIKRVHPDMIFSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred HHHHHHhcCCCEEECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999887666667778899999887766543 3344433
No 14
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.43 E-value=2.5e-12 Score=126.66 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=126.6
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEecccc
Q 002475 723 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRT 802 (917)
Q Consensus 723 adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~~ 802 (917)
|++||+|+.. ++.-++|++++..+|.++.+.... +.++|+|+.+..|
T Consensus 1 ARaIIiL~~k---~d~ye~Da~a~lsVLaL~~v~e~~------------------------------~g~vIVE~S~~~t 47 (206)
T PF06241_consen 1 ARAIIILAEK---EDRYESDADAFLSVLALQPVKEGL------------------------------SGHVIVEVSDSDT 47 (206)
T ss_pred CceEEEeCCC---CCcchhhHHHHHHHhhcccccccC------------------------------cccEEEEecCCCh
Confidence 6789999874 356789999999999987664321 3689999999999
Q ss_pred cchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHcccCceEEEEcCcccccCCCCccHHHHHHHhccCCcEEEE
Q 002475 803 RNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIG 882 (917)
Q Consensus 803 ~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~~l~~~~r~~g~ivIG 882 (917)
.+++...++..+=.-..+++++|.|.+.+|++..++++||+.+-+++|++.++.. .+++|.|+.. .-..++++|
T Consensus 48 ~~LlKsv~G~~VetV~dv~skL~VQCsRQ~GL~~Iy~~iL~~~k~vf~l~~~P~L----~Gm~y~dvr~--~Fpdav~CG 121 (206)
T PF06241_consen 48 EQLLKSVSGLKVETVHDVISKLMVQCSRQPGLAQIYEDILGFEKNVFNLKRWPQL----DGMKYRDVRR--SFPDAVVCG 121 (206)
T ss_pred HHHHHhhcCceeeeHHHHHHHHHHHhccCccHHHHHHHHhCCCCcEEEEecCccc----CCcCHHHHHh--cCCcceeee
Confidence 9999998875444447889999999999999999999999999999999877543 5899999865 357999999
Q ss_pred EEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 883 YRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 883 ~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
+.+. | .+++||.+ +..+..||+|+||++.
T Consensus 122 v~r~-G-kI~fhP~D---d~vL~e~DklLvIa~~ 150 (206)
T PF06241_consen 122 VKRD-G-KIVFHPDD---DYVLREGDKLLVIAPV 150 (206)
T ss_pred eeeC-C-eeEECCCC---CceeecCCEEEEEeec
Confidence 9875 5 58999997 8999999999999975
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.33 E-value=9.9e-12 Score=117.77 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=95.6
Q ss_pred EEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002475 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 725 (917)
Q Consensus 646 ilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ada 725 (917)
++|||||+.|..+++.|.+. +..+++++.+ +++++.+.+.| +.++.||++++++|+++++++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d--~~~~~~~~~~~----------~~~i~gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRD--PERVEELREEG----------VEVIYGDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESS--HHHHHHHHHTT----------SEEEES-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECC--cHHHHHHHhcc----------cccccccchhhhHHhhcCccccCE
Confidence 68999999999999999874 5789999975 46777776633 357899999999999999999999
Q ss_pred EEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEecccccch
Q 002475 726 ILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNL 805 (917)
Q Consensus 726 vIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~~~~l 805 (917)
+|++++ .|..|+.+++.+|++++.. ++++++.++++.+.
T Consensus 66 vv~~~~---------~d~~n~~~~~~~r~~~~~~--------------------------------~ii~~~~~~~~~~~ 104 (116)
T PF02254_consen 66 VVILTD---------DDEENLLIALLARELNPDI--------------------------------RIIARVNDPENAEL 104 (116)
T ss_dssp EEEESS---------SHHHHHHHHHHHHHHTTTS--------------------------------EEEEEESSHHHHHH
T ss_pred EEEccC---------CHHHHHHHHHHHHHHCCCC--------------------------------eEEEEECCHHHHHH
Confidence 999985 5789999999999999763 79999999999999
Q ss_pred hhccCCCcEEe
Q 002475 806 VSVSRISDYVL 816 (917)
Q Consensus 806 l~~~~~~d~V~ 816 (917)
++..|++.+|.
T Consensus 105 l~~~g~d~vi~ 115 (116)
T PF02254_consen 105 LRQAGADHVIS 115 (116)
T ss_dssp HHHTT-SEEEE
T ss_pred HHHCCcCEEEC
Confidence 99887554443
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.21 E-value=7.6e-11 Score=141.55 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=117.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
..++|++|||+|+.|+.+++.|.+. |.++++||.+ +++++.+.+.| +..+.||++++++|+++++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d--~~~~~~~~~~g----------~~~i~GD~~~~~~L~~a~i 479 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETS--RTRVDELRERG----------IRAVLGNAANEEIMQLAHL 479 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHCC----------CeEEEcCCCCHHHHHhcCc
Confidence 4579999999999999999999865 7889999974 57787776532 4578999999999999999
Q ss_pred CCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEecc
Q 002475 721 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDS 800 (917)
Q Consensus 721 e~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~ 800 (917)
++||++++++++ |.+|..+++.+|..+++ ++|++...++
T Consensus 480 ~~a~~viv~~~~---------~~~~~~iv~~~~~~~~~--------------------------------~~iiar~~~~ 518 (558)
T PRK10669 480 DCARWLLLTIPN---------GYEAGEIVASAREKRPD--------------------------------IEIIARAHYD 518 (558)
T ss_pred cccCEEEEEcCC---------hHHHHHHHHHHHHHCCC--------------------------------CeEEEEECCH
Confidence 999999998753 55777777888888765 3789999999
Q ss_pred cccchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHH
Q 002475 801 RTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRV 837 (917)
Q Consensus 801 ~~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~v 837 (917)
++.+.+++.|++.+|.+.+.+++.+++....|+..++
T Consensus 519 ~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~~~~~~ 555 (558)
T PRK10669 519 DEVAYITERGANQVVMGEREIARTMLELLETPPAGEV 555 (558)
T ss_pred HHHHHHHHcCCCEEEChHHHHHHHHHHHhcCCCcccc
Confidence 9988889888777777788889999998888876554
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.11 E-value=4.3e-10 Score=135.89 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=104.7
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..+|++|||+|+.|+.+++.|.+. |.++++||.+ +++++.+.+.| ..++.||++++++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d--~~~v~~~~~~g----------~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERD--ISAVNLMRKYG----------YKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhC---CCCEEEEECC--HHHHHHHHhCC----------CeEEEeeCCCHHHHHhcCCc
Confidence 368999999999999999999864 7889999975 46788776532 35689999999999999999
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEeccc
Q 002475 722 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSR 801 (917)
Q Consensus 722 ~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~ 801 (917)
+||.+|++++ +|..|+.++.++|+++|+. +|+++..|++
T Consensus 464 ~A~~vv~~~~---------d~~~n~~i~~~~r~~~p~~--------------------------------~IiaRa~~~~ 502 (601)
T PRK03659 464 KAEAIVITCN---------EPEDTMKIVELCQQHFPHL--------------------------------HILARARGRV 502 (601)
T ss_pred cCCEEEEEeC---------CHHHHHHHHHHHHHHCCCC--------------------------------eEEEEeCCHH
Confidence 9999999986 4678999999999998773 7999999999
Q ss_pred ccchhhccCCCcEEecHHHHHHHHH
Q 002475 802 TRNLVSVSRISDYVLSNELVSMALA 826 (917)
Q Consensus 802 ~~~ll~~~~~~d~V~S~~lv~~~LA 826 (917)
+.+.++++|+++++......+..|+
T Consensus 503 ~~~~L~~~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 503 EAHELLQAGVTQFSRETFSSALELG 527 (601)
T ss_pred HHHHHHhCCCCEEEccHHHHHHHHH
Confidence 9999999886554432222244444
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.03 E-value=1.5e-09 Score=131.46 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=98.5
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
.+|++|||+|+.|+.+++.|.+. |.+++++|.+ ++|++.+.+.| ..++.||++++++|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d--~~~v~~~~~~g----------~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDHD--PDHIETLRKFG----------MKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEEEEECC--HHHHHHHHhcC----------CeEEEEeCCCHHHHHhcCCCc
Confidence 68999999999999999999864 7889999975 47888876532 356899999999999999999
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEecccc
Q 002475 723 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRT 802 (917)
Q Consensus 723 adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d~~~ 802 (917)
||.+|++++ +|..|+.++.++|+++|+. +|+++..|.++
T Consensus 465 A~~vvv~~~---------d~~~n~~i~~~ar~~~p~~--------------------------------~iiaRa~d~~~ 503 (621)
T PRK03562 465 AEVLINAID---------DPQTSLQLVELVKEHFPHL--------------------------------QIIARARDVDH 503 (621)
T ss_pred CCEEEEEeC---------CHHHHHHHHHHHHHhCCCC--------------------------------eEEEEECCHHH
Confidence 999999985 3678999999999998773 68889989988
Q ss_pred cchhhccCCCcE
Q 002475 803 RNLVSVSRISDY 814 (917)
Q Consensus 803 ~~ll~~~~~~d~ 814 (917)
.+.++.+|++.+
T Consensus 504 ~~~L~~~Gad~v 515 (621)
T PRK03562 504 YIRLRQAGVEKP 515 (621)
T ss_pred HHHHHHCCCCEE
Confidence 888888775444
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.02 E-value=4e-10 Score=99.93 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhh---hcCCCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHHHHHHH
Q 002475 295 TIFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (917)
Q Consensus 295 ~l~lil~g~~~~~~---~e~~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~ 366 (917)
++.++..|+++++. .|++++.||+||+++|+||+||||. |.+..||+++++.++.|+.+++++++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666777766 4678999999999999999999997 577889999999999999999999999887764
No 20
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.74 E-value=2.3e-07 Score=94.91 Aligned_cols=145 Identities=22% Similarity=0.247 Sum_probs=118.8
Q ss_pred cccccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC
Q 002475 378 EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 378 ~~~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
.....+|+++||+|+.+..+...|... +..+++++.+++.++... ..++.++.||+++.+.|.+++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~------~~~~~vi~~~~~~~~~~~--------~~~~~~~~gd~~~~~~l~~a~ 82 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLAS------GIPVVVIDSDEDRVELLR--------ELGLLVVLGDATREEVLEAAG 82 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHH--------HCCCcEEEecCCCHHHHHhcC
Confidence 346789999999999999999888753 348899999887766543 235678999999999999999
Q ss_pred cccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC-CCCHHHHHHcCCCeEEEeccHHHHHHHHHHHH
Q 002475 458 VSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCA 536 (917)
Q Consensus 458 I~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d-~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~ 536 (917)
++.|+.++++..+ +..|+.++..++.++|+ .+++++..+ ..+...+...|++. ++++....+..++..+
T Consensus 83 ~~~a~~vi~~~~~------~~~~~~~~~~~~~~~p~--~~i~~~~~~~~~~~~~l~~~G~~~--vi~~~~~~~~~~~~~~ 152 (212)
T COG1226 83 IERARAVIVTLSD------DATNVFIVLLARAINPE--LEILARARDLDEAVETLTTVGADE--VVPPTFESALLLARAA 152 (212)
T ss_pred hhheeEEEEecCC------HHHHHHHHHHHHHHCCC--CEEEEEeccchHHHHHHHHcCCCe--eecHHHHHHHHHHHHH
Confidence 9999999999976 88999999999999994 459999998 66678889999997 4777777888888888
Q ss_pred cCCcHHHHHH
Q 002475 537 LQPGLAQIWE 546 (917)
Q Consensus 537 ~~Pg~~~vl~ 546 (917)
..+.......
T Consensus 153 ~~~~~~~~~~ 162 (212)
T COG1226 153 LVGLGGDSVE 162 (212)
T ss_pred hcccCCchhh
Confidence 7765554443
No 21
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.72 E-value=9.4e-09 Score=116.56 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--cC----CCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHH
Q 002475 289 LALLFATIFLIIFGGLALYAV--SD----SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (917)
Q Consensus 289 l~ll~~~l~lil~g~~~~~~~--e~----~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i 361 (917)
+.++++.+++++++++.|+.- |+ .|+.-++||+++|||||||||. |.|+.||+++..-++.|++++|+-|.+|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 445566788888888888653 11 5678899999999999999997 6899999999999999999999999999
Q ss_pred HHHHHHHH
Q 002475 362 SDAISEKV 369 (917)
Q Consensus 362 ~~~i~~~~ 369 (917)
.+-+...-
T Consensus 427 v~nF~~~y 434 (477)
T KOG3713|consen 427 VNNFSMYY 434 (477)
T ss_pred hhhHHHHH
Confidence 88777653
No 22
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3.7e-09 Score=114.17 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHH
Q 002475 289 LALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (917)
Q Consensus 289 l~ll~~~l~lil~g~~~~~~~e~------~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i 361 (917)
+.++++.+++|++++..|+.-.+ .|+.|||||+++|||||||||. |.|.+|+++.-+..+.|++.++.-+.+|
T Consensus 363 LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 33445567777777777765322 5789999999999999999997 6889999999999999999888888777
Q ss_pred HHHHH
Q 002475 362 SDAIS 366 (917)
Q Consensus 362 ~~~i~ 366 (917)
++-+.
T Consensus 443 VsNFn 447 (507)
T KOG1545|consen 443 VSNFN 447 (507)
T ss_pred Eeccc
Confidence 65543
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.46 E-value=8e-08 Score=109.25 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhhhhcC-----------CCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHH
Q 002475 293 FATIFLIIFGGLALYAVSD-----------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGL 360 (917)
Q Consensus 293 ~~~l~lil~g~~~~~~~e~-----------~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~ 360 (917)
.+.++.+++.+.+.|..|. .++.||+||.++|+||+||||. |.|+.||+++..+.++|+-+|+.--|+
T Consensus 238 YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 238 YIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccc
Confidence 3344444555555555553 3799999999999999999998 589999999999999999999999898
Q ss_pred HHHHHHHHHHh
Q 002475 361 VSDAISEKVDS 371 (917)
Q Consensus 361 i~~~i~~~~~~ 371 (917)
+...+.-++++
T Consensus 318 LGSGfALKVQe 328 (654)
T KOG1419|consen 318 LGSGFALKVQE 328 (654)
T ss_pred ccchhhhhhHH
Confidence 88777666543
No 24
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.33 E-value=8.8e-07 Score=111.44 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc------CCCHHH-----------------HHHHHHHhhhccCCCCC-cCCccCee
Q 002475 286 AKLLALLFATIFLIIFGGLALYAVS------DSSFAE-----------------ALWLSWTFVADSGNHAD-RVGTGPRI 341 (917)
Q Consensus 286 ~~ll~ll~~~l~lil~g~~~~~~~e------~~s~~d-----------------Aly~~~~tvTTvGygd~-~~t~~gRi 341 (917)
.+++.+++.++.++-..+++|+++. +.+|.+ |+||+++|+|||||||. +.+..+|+
T Consensus 200 ~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i 279 (823)
T PLN03192 200 IRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMI 279 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHH
Confidence 3445555555555555566665542 234544 69999999999999998 57889999
Q ss_pred eeehhhhhhHHHHHHHHHHHHHHHHH
Q 002475 342 VSVSISSGGMLIFAMMLGLVSDAISE 367 (917)
Q Consensus 342 ~~v~lil~Gi~i~a~~ig~i~~~i~~ 367 (917)
|++++|++|+++|++++|.+++.+.+
T Consensus 280 ~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 280 FIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987754
No 25
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.9e-06 Score=93.04 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCCCc--C------CccC-eeeeehhhhhhHHHHHHH
Q 002475 287 KLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR--V------GTGP-RIVSVSISSGGMLIFAMM 357 (917)
Q Consensus 287 ~ll~ll~~~l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd~~--~------t~~g-Ri~~v~lil~Gi~i~a~~ 357 (917)
.++.++.+.++++..|+..|..+|+||++||+|+.++|+||+||||.. + +.+. +++.++.|++|+.+++.+
T Consensus 160 l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~ 239 (350)
T KOG4404|consen 160 LVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYAL 239 (350)
T ss_pred HHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHH
Confidence 345555667888888999999999999999999999999999999952 2 2223 556889999999999888
Q ss_pred HHHHHHHHHHH
Q 002475 358 LGLVSDAISEK 368 (917)
Q Consensus 358 ig~i~~~i~~~ 368 (917)
+.+++-.+...
T Consensus 240 ~NllvLrf~t~ 250 (350)
T KOG4404|consen 240 LNLLVLRFMTM 250 (350)
T ss_pred HHHHHHHHHHh
Confidence 88776555443
No 26
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.21 E-value=3.3e-06 Score=83.50 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=57.7
Q ss_pred ceEEEecCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.++++...+++.|++++|+..+ ..++++|||.| +++.+++|++.++|++||.|||+|+....+++
T Consensus 88 ~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~SPgPy~vle~gDtlvviG~~~~~~r~ 153 (162)
T COG0490 88 EWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILSPGPYTVLEAGDTLVVIGEETGLKRA 153 (162)
T ss_pred eeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecCCCchhhhcCCCEEEEEecchHhHHH
Confidence 4677888889999999999876 47999999998 58899999999999999999999998876654
No 27
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.15 E-value=4.4e-06 Score=94.94 Aligned_cols=234 Identities=18% Similarity=0.190 Sum_probs=150.9
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhc-----CCCCeEEEEccC-ChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhH
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFL-----APGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRH 714 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~-----~~g~~i~II~~~-p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~ 714 (917)
..++||++||.=. -+.+-.-|..++ .-..+++.+-.. |+-|.+...+. ...+|.|.+|...++-+
T Consensus 355 hgkkhivvcghit-yesvshflkdflhedrddvdvevvflhr~~pdleleglfkr--------hft~veffqgtvmnp~d 425 (1103)
T KOG1420|consen 355 HGKKHIVVCGHIT-YESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKR--------HFTQVEFFQGTVMNPHD 425 (1103)
T ss_pred cCCeeEEEeccee-HHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhh--------heeeEEEecccccChhh
Confidence 4678999999521 222333332222 123566666543 54444443332 23578999999999999
Q ss_pred HhcCCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEE
Q 002475 715 LESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIII 794 (917)
Q Consensus 715 L~~a~Ie~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv 794 (917)
|.++.|+.||++++|++.- -.++...|+.|++-+..+|+..++. .+|..|-|- |-=
T Consensus 426 l~rvki~~adaclvlanky-c~dpdaedaanimrvisiknys~di-------------------rvi~qlmqy----hnk 481 (1103)
T KOG1420|consen 426 LARVKIESADACLVLANKY-CADPDAEDAANIMRVISIKNYSPDI-------------------RVITQLMQY----HNK 481 (1103)
T ss_pred hhheeccccceeeeecccc-cCCCChhhhhhheEEEEeccCCCch-------------------hHHHHHHHh----hch
Confidence 9999999999999999742 2345567888999988888887663 244444331 222
Q ss_pred EEEecccccchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHcc-------------------cCceEEEEcCc
Q 002475 795 SEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE-------------------EGNEMCIKPAE 855 (917)
Q Consensus 795 ~Ei~d~~~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~~-------------------eG~el~i~~~~ 855 (917)
+.+++.-. -.-..++|+|.-.++--..+||.-.-|+....+..||+- -|.|+|-+..+
T Consensus 482 ayllnips---wdwk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~ls 558 (1103)
T KOG1420|consen 482 AYLLNIPS---WDWKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLS 558 (1103)
T ss_pred heeecCCC---cccccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcC
Confidence 33333211 011146888888888878889999999999988888751 24455543222
Q ss_pred ccccCCCCccHHHHHHHhccC-CcEEEEEEeCCC----CcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 856 FYLFDQEEISFFDIMIRGRQR-QEIVIGYRLANT----ERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 856 ~~~~~~~~ltf~~l~~~~r~~-g~ivIG~~~~~g----~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
+...+++|.++.+..-.+ +-+++++...++ .++.|||.+ ..++++|-.=+.|+.+
T Consensus 559 ---p~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~---h~kiq~~tqgffiaqs 618 (1103)
T KOG1420|consen 559 ---PAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGN---HLKIQEGTQGFFIAQS 618 (1103)
T ss_pred ---HhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCC---CceeccCCceEEEecc
Confidence 224688999887765433 666666544321 247899987 7899999887777653
No 28
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=5.4e-05 Score=82.58 Aligned_cols=211 Identities=14% Similarity=0.064 Sum_probs=141.5
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc-cCcccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r-AgI~~A 461 (917)
+.|+|+|-|..+..+++.++...+ .+...+++.++.+...... ....+.+.+=||++.+.|+. .+-+-.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~~-------~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPKN-------YPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhccccc-------CcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 578999999999999988876432 3466666776654433211 12457778889999999876 688888
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHHHHHHHHHHHcCCcH
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~Pg~ 541 (917)
+|+|+.-+ -.++..+.-.+|..+++..+.|+......++-+..+...++. +...+..++.....+ |++
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~l---id~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLIL---IDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceee---cchHHHHHHHHHHhc--CCc
Confidence 89998874 245667777888888865555555554344444445555553 555555555444332 333
Q ss_pred HHHHHHH-hc-CCCceEEEecCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCcc
Q 002475 542 AQIWEDI-LG-FENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (917)
Q Consensus 542 ~~vl~~L-l~-~~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~ 619 (917)
...-..+ ++ ++-.|+.+...+.|+-+.++++.. ..+.+++++| +|+ .+.|..+.+|++||+|+|+|++.-..
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YR---N~k-lll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYR---NDK-LLLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEE---CCE-EEEeccceEecCCCEEEEeCChHHHH
Confidence 3221111 11 123577777778888888998875 3689999998 465 46789999999999999999987554
Q ss_pred CC
Q 002475 620 AP 621 (917)
Q Consensus 620 ~~ 621 (917)
.+
T Consensus 214 ~~ 215 (471)
T COG3400 214 AV 215 (471)
T ss_pred HH
Confidence 43
No 29
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=5.4e-05 Score=77.33 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 640 PKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 640 ~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
....+|+++||||+.+..++..|... +..+++++..+ ++.+.+...| +.++.||+++.+.|.+++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~~--~~~~~~~~~~----------~~~~~gd~~~~~~l~~a~ 82 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSDE--DRVELLRELG----------LLVVLGDATREEVLEAAG 82 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECCH--HHHHHHHHCC----------CcEEEecCCCHHHHHhcC
Confidence 35689999999999999999999865 56788888643 5666665432 256899999999999999
Q ss_pred CCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEec
Q 002475 720 LETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILD 799 (917)
Q Consensus 720 Ie~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d 799 (917)
++.|+.+++... .+..++..+..++.++|.. .+++...+
T Consensus 83 ~~~a~~vi~~~~---------~~~~~~~~~~~~~~~~p~~--------------------------------~i~~~~~~ 121 (212)
T COG1226 83 IERARAVIVTLS---------DDATNVFIVLLARAINPEL--------------------------------EILARARD 121 (212)
T ss_pred hhheeEEEEecC---------CHHHHHHHHHHHHHHCCCC--------------------------------EEEEEecc
Confidence 999999999875 4667888888899998773 46666666
Q ss_pred -ccccchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHH
Q 002475 800 -SRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVL 838 (917)
Q Consensus 800 -~~~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl 838 (917)
..+...+...|..+++.+....+..++..+..+......
T Consensus 122 ~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 122 LDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred chHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 444566677787777777666666666555555444333
No 30
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00016 Score=82.13 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=146.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhc----CCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHh
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFL----APGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~----~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~ 716 (917)
...+|+++|--.-....+.+-|.++- .....++++.....+....-+.+. .|=|.++++++|....+++|+
T Consensus 285 ~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~eld~~~rmllki-----plwnnrvhyv~gs~lrd~dl~ 359 (1087)
T KOG3193|consen 285 GVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAELDNQTRMLLKI-----PLWNNRVHYVRGSSLRDEDLE 359 (1087)
T ss_pred cccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHHhcchhhhheec-----cccccceeeecccccccchhh
Confidence 35679999987766666666666542 123566666642211122222222 234567899999999999999
Q ss_pred cCCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEE
Q 002475 717 SLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISE 796 (917)
Q Consensus 717 ~a~Ie~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~E 796 (917)
+|++.++.++.||+..... +...+|..+++-.-.+|+..|+..+| + .+-|
T Consensus 360 ra~~~~s~acfilsar~~~-~k~a~dehtilrswaikdfapnv~qy-----v--------------qifr---------- 409 (1087)
T KOG3193|consen 360 RANVATSKACFILSARHVN-RKVATDEHTILRSWAIKDFAPNVKQY-----V--------------QIFR---------- 409 (1087)
T ss_pred hhhhcccchheeeehhhhc-cccccchhhHHHHHhhhhcCCchHHH-----h--------------hhhc----------
Confidence 9999999999999876542 45678999999999999999875222 0 0112
Q ss_pred EecccccchhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHc--------------------ccCceEEEEc--C
Q 002475 797 ILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFA--------------------EEGNEMCIKP--A 854 (917)
Q Consensus 797 i~d~~~~~ll~~~~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~--------------------~eG~el~i~~--~ 854 (917)
++++-.++. +.-+|.-+++-=.+||.--..|+++.++.-|+. ..|+|+|-.- -
T Consensus 410 ---~e~k~hi~~--ae~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~d 484 (1087)
T KOG3193|consen 410 ---AETKMHIEH--AEVLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQD 484 (1087)
T ss_pred ---hhhhhhhhh--heeEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecc
Confidence 222222221 122334445555566666667777777654442 2466776552 2
Q ss_pred cccccCCCCccHHHHHHHh-ccCCcEEEEEEeCC-CCcEEECCCCCCCCCeecCCCEEEEEec
Q 002475 855 EFYLFDQEEISFFDIMIRG-RQRQEIVIGYRLAN-TERAIINPSQKSEPRKWSLDDVFVVISS 915 (917)
Q Consensus 855 ~~~~~~~~~ltf~~l~~~~-r~~g~ivIG~~~~~-g~~~iiNP~~k~~~~~l~~gD~LIVi~~ 915 (917)
+.+..+-++.+|......+ ++-|.-+||++..+ .+++.+||.. ...+++.|.++.++-
T Consensus 485 skff~ey~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~---~hi~~~~dt~yym~l 544 (1087)
T KOG3193|consen 485 SKFFCEYVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGS---SHIIQPTDTVYYMGL 544 (1087)
T ss_pred cceeeeecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCc---ccccCCCCeEEEEec
Confidence 2333343455665544333 45599999998643 3357799986 789999999999863
No 31
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.84 E-value=7.3e-06 Score=70.71 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=46.4
Q ss_pred eEEEecCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccC
Q 002475 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (917)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~ 620 (917)
|+.+.+.++++|++++|+.... +++.++||.| ++..+.|.++++|++||.|+++|+.+++.+
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R----~~~~~~p~~~~~l~~gD~l~v~g~~~~i~~ 65 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR----GGEIIIPDGDTVLQAGDILIVVGDPEDIER 65 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE----TEEEES--TT-BE-TTEEEEEEEEHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE----CCEEECCCCCCEECCCCEEEEEECHHHHHH
Confidence 5667777899999999966542 4899999987 367789999999999999999999876543
No 32
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.76 E-value=1.9e-06 Score=94.16 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=72.1
Q ss_pred HHHhhhheeeccCchHHHHHHHHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHHhhhccCCCCCc-CCccCeeee
Q 002475 271 RVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHADR-VGTGPRIVS 343 (917)
Q Consensus 271 rl~y~ld~~~s~~~~~~ll~ll~~~l~lil~g~~~~~~~e~------~s~~dAly~~~~tvTTvGygd~~-~t~~gRi~~ 343 (917)
.+.|-|...-+..+ +.++.++.++|+++++.||.--+ .++..|||++++|+||.||||.. .+.+|++|+
T Consensus 312 ILGYTLKSCASELG----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfG 387 (632)
T KOG4390|consen 312 ILGYTLKSCASELG----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFG 387 (632)
T ss_pred hhhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhh
Confidence 45566544444333 44556678888888888876433 56889999999999999999984 678999999
Q ss_pred ehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 344 VSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 344 v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
-+..+.|+++++.-+.+|++-+...
T Consensus 388 siCSLSGVLVIALPVPvIVSNFSRI 412 (632)
T KOG4390|consen 388 SICSLSGVLVIALPVPVIVSNFSRI 412 (632)
T ss_pred hhhcccceEEEeccccEEEechhHH
Confidence 9999999999888888877666543
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.55 E-value=0.00015 Score=81.56 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=64.3
Q ss_pred CchHHHHHHHHH-HHHHHHHHHhhhhhh-------cC--------------CCHHHHHHHHHHhhhccCCCCCc---CCc
Q 002475 283 YPYAKLLALLFA-TIFLIIFGGLALYAV-------SD--------------SSFAEALWLSWTFVADSGNHADR---VGT 337 (917)
Q Consensus 283 ~~~~~ll~ll~~-~l~lil~g~~~~~~~-------e~--------------~s~~dAly~~~~tvTTvGygd~~---~t~ 337 (917)
-+|+.++.++++ .++..++.+++||++ +. .+|.+||||++.|.||+|||... ...
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 457766655544 344455555555542 11 58999999999999999999852 334
Q ss_pred cCeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccCeEEEEecc
Q 002475 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWS 391 (917)
Q Consensus 338 ~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~~~~lr~G~~~~~~~~HIII~G~g 391 (917)
.+-+++++-.++|+++.++++|++...+.+ =+++...+...++.||+-.+
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~R~~tI~FS~~AVI~~~d 161 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKKRASTILFSKKAVIAPRD 161 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCGGGSEEE-SSEEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccceEEEEeeeEEeecC
Confidence 556666677788999999999987654432 11111234567777777543
No 34
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.29 E-value=0.00082 Score=62.68 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=54.2
Q ss_pred cCCCeEEEeccHHHHHHHHHHHHcCCcHHHHHHHHhcCC--------------------CceEEEecCC-ccCCCcHHhH
Q 002475 514 VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEV 572 (917)
Q Consensus 514 ~Gad~VevV~~~el~a~lLa~~~~~Pg~~~vl~~Ll~~~--------------------g~ei~v~~~p-~l~G~tf~el 572 (917)
-++|. +|+.+++...+||+++.+||+++++.||+... ++|+|....| .|.|++|.++
T Consensus 8 ~~~d~--vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~ 85 (101)
T PF03493_consen 8 KFADQ--VICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEA 85 (101)
T ss_dssp TTT-E--EEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHH
T ss_pred ccCce--EEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHH
Confidence 35576 59999999999999999999999999998641 2588888775 6999999999
Q ss_pred hhh-C--CCeEEEEEE
Q 002475 573 VIS-F--PDAIPCGIK 585 (917)
Q Consensus 573 ~~~-~--~~~ivIGI~ 585 (917)
... + .+++++||+
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 874 2 589999984
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0003 Score=80.97 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 002475 311 DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSL 372 (917)
Q Consensus 311 ~~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~~~~l 372 (917)
.|+|.+|+|++++++||+|||+. |.|..||+|+++..++|+-++.+.++-+...+.+.+..+
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999997 578899999999999999999888888877777765543
No 36
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.008 Score=68.40 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcC--------CCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHH
Q 002475 291 LLFATIFLIIFGGLALYAVSD--------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (917)
Q Consensus 291 ll~~~l~lil~g~~~~~~~e~--------~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i 361 (917)
|++.++.+.++.++.+.+-|. .++.++.|+...|+-++||||. |.|+.||.++++.-++|.++-++++++|
T Consensus 257 L~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvi 336 (489)
T KOG3684|consen 257 LLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVI 336 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHH
Confidence 334455556666666655542 3599999999999999999998 5789999999998889988888888877
Q ss_pred HHHH
Q 002475 362 SDAI 365 (917)
Q Consensus 362 ~~~i 365 (917)
+-.+
T Consensus 337 sRKL 340 (489)
T KOG3684|consen 337 ARKL 340 (489)
T ss_pred HHHH
Confidence 6443
No 37
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.06 E-value=0.00038 Score=84.64 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhccCCCCCc-CCccCeeeeehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 314 FAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 314 ~~dAly~~~~tvTTvGygd~~-~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
+.-|+||++.|+||+|||+.+ .+....+|++++|++|+++||++||-++..+...
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 356999999999999999986 6677899999999999999999999998877654
No 38
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.95 E-value=6.1e-05 Score=86.66 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCCCc-CCccCe--------eeeehhhhhhHHHHHHHH
Q 002475 291 LLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR-VGTGPR--------IVSVSISSGGMLIFAMML 358 (917)
Q Consensus 291 ll~~~l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd~~-~t~~gR--------i~~v~lil~Gi~i~a~~i 358 (917)
++.++++.+..|+.++...|+|+|++||||+++++||+||||.. .+..++ .+..+++++|+..++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 220 LLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred hheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 33445666777888888889999999999999999999999984 555555 345567777877776665
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.001 Score=72.38 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=74.0
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHhcccccccccccccccccCCCCChhHHHHhhhhee-----eccCchHHHHHHHHHH
Q 002475 222 ADGRTVALYSVIVT-LLMPFVLYKYLDYLPQIKNFSKRTKKNKEEVPLKKRVAYSVDVC-----FSVYPYAKLLALLFAT 295 (917)
Q Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~rl~y~ld~~-----~s~~~~~~ll~ll~~~ 295 (917)
-+.|.+++++..|+ +++|..+|-++.-= ...+ -++++.-+.+++ ++..-++.+...
T Consensus 5 qnvR~l~Livct~tYLLvGAaVFdaLEse----------~E~~----~r~~l~~~~~~~~~kyn~s~~d~r~~er~---- 66 (350)
T KOG4404|consen 5 QNVRTLLLIVCTFTYLLVGAAVFDALESE----------NEAR----ERERLERRLANLKRKYNLSEEDYRELERV---- 66 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCc----------chHH----HHHHHHHHHHHHHHhhCCCHHHHHHHHHH----
Confidence 35788999999999 99999988665432 1111 112222222222 233333322211
Q ss_pred HHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHHHHHHH
Q 002475 296 IFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (917)
Q Consensus 296 l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~ 366 (917)
+ +-+.---.-..|.|.-||||+.+.+||+|||-. |.|.+||+|.++..++|+-+--+++..+.+.+.
T Consensus 67 ---i-~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 67 ---I-LKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred ---H-HhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 0 000000111249999999999999999999986 578899999999888886554444444444333
No 40
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0017 Score=65.57 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=53.1
Q ss_pred eEEEecCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
-+.+.+.+.++|+|++|+... ..++.+|+|+| |+..+++|+.++.|.+||.|++-|++.....+
T Consensus 122 rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~l 186 (204)
T COG3273 122 RVRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVELL 186 (204)
T ss_pred EEEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHHH
Confidence 345666788999999999865 46899999998 46688999999999999999999987665443
No 41
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0067 Score=70.18 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhccCCCCC-cCCccCeeeeehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 314 ~~dAly~~~~tvTTvGygd~-~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
+..++||+++.+||+|||.+ +.|...++|++.+|++|-++++.++|-++..|.+.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 57899999999999999998 47778999999999999999999999888777654
No 42
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.10 E-value=0.028 Score=56.68 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=60.0
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...+++|+|+|+.+...++.|... +..|++++.+ ..+++. ++ ..+.+ +...++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l~-~l------~~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEMK-EL------PYITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHHH-hc------cCcEE------EecccChhcCCC
Confidence 457899999999999999999764 4677777533 222221 11 11222 346777888999
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhh
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l 490 (917)
|+.||++|++ |+.|..++..++..
T Consensus 71 a~lViaaT~d------~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATNQ------HAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCCC------HHHHHHHHHHHHHC
Confidence 9999999977 89999999988875
No 43
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.01 E-value=0.018 Score=58.02 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|+|+.+...++.|.+. |..|++|+.. .++.+.+ +..+. + +.+.+++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---ga~V~VIsp~----~~~~l~~-------l~~i~--~------~~~~~~~~dl~ 69 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---GAFVTVVSPE----ICKEMKE-------LPYIT--W------KQKTFSNDDIK 69 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCc----cCHHHHh-------ccCcE--E------EecccChhcCC
Confidence 357999999999999999999765 7889999743 3444432 22222 1 35778888999
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHh
Q 002475 722 TFDSILILADESLEDSIVHSDSRSLATLLLIRDI 755 (917)
Q Consensus 722 ~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l 755 (917)
.||.|++.+++ |..|..+...+|..
T Consensus 70 ~a~lViaaT~d---------~e~N~~i~~~a~~~ 94 (157)
T PRK06719 70 DAHLIYAATNQ---------HAVNMMVKQAAHDF 94 (157)
T ss_pred CceEEEECCCC---------HHHHHHHHHHHHHC
Confidence 99999998864 56788888887764
No 44
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.017 Score=57.69 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 862 EEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 862 ~~ltf~~l~~~~r~~g~ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
.+.|.+|+..+ .+.|+++||+.+ ++ +.+++|.+ ..++++||.|||+|++
T Consensus 99 ~GksiGdl~ir-q~TGaTIIAI~r-~~-e~I~SPgP---y~vle~gDtlvviG~~ 147 (162)
T COG0490 99 IGKTIGDLNIR-QNTGATVIAIVR-NE-EKILSPGP---YTVLEAGDTLVVIGEE 147 (162)
T ss_pred cCcchhhcccc-cccCcEEEEEEe-cC-cEecCCCc---hhhhcCCCEEEEEecc
Confidence 35677887553 345999999999 55 58999987 8999999999999964
No 45
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.69 E-value=0.01 Score=69.13 Aligned_cols=94 Identities=10% Similarity=0.169 Sum_probs=72.0
Q ss_pred hhhheeeccCchHHHHHHHHHHHHHHHHHHhhhhhhc---------------CCCHHHHHHHHHHhhhccCCCCCcCCcc
Q 002475 274 YSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVS---------------DSSFAEALWLSWTFVADSGNHADRVGTG 338 (917)
Q Consensus 274 y~ld~~~s~~~~~~ll~ll~~~l~lil~g~~~~~~~e---------------~~s~~dAly~~~~tvTTvGygd~~~t~~ 338 (917)
.+||+.|+..-+.++...+.-++-++=+.+++||+.. |..+.-++||++.|++|+|....|.+..
T Consensus 349 ~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~ 428 (815)
T KOG0499|consen 349 HHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQTLF 428 (815)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcchHH
Confidence 3577777765555555554445666667788887752 4578999999999999999988887777
Q ss_pred CeeeeehhhhhhHHHHHHHHHHHHHHHHH
Q 002475 339 PRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (917)
Q Consensus 339 gRi~~v~lil~Gi~i~a~~ig~i~~~i~~ 367 (917)
..+|..+--+.|+++|+.+||.+=+.+..
T Consensus 429 E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 429 EIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777789999999999988777655
No 46
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.57 E-value=0.059 Score=62.09 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhccCCCCCcCCccCeeeeehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 315 AEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 315 ~dAly~~~~tvTTvGygd~~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
.-++||+..|+||.|--..|.+....+|.++=.++|+++||.++|-|.+.+.+.
T Consensus 185 ~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 185 LYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 458999999999999888888888999999999999999999999888877664
No 47
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.66 E-value=0.29 Score=51.49 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=57.1
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~ 459 (917)
...+++|+|.|+.+...++.|... +..|++++.+. +.+...... ..+.+. ...++.+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~-------~~i~~~------~~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEE-------GKIRWK------QKEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhC-------CCEEEE------ecCCChhhcC
Confidence 356899999999999999999864 35677776543 333433221 124332 2345566778
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhh
Q 002475 460 KARAIIVLASDENADQSDARALRVVLSLTG 489 (917)
Q Consensus 460 ~A~aVIilt~d~~~~~sD~~Ni~~~Laar~ 489 (917)
+|+.||++|++ ++.|..++..++.
T Consensus 70 ~adlViaaT~d------~elN~~i~~~a~~ 93 (202)
T PRK06718 70 DAFLVIAATND------PRVNEQVKEDLPE 93 (202)
T ss_pred CceEEEEcCCC------HHHHHHHHHHHHh
Confidence 99999999976 7888888776643
No 48
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.53 E-value=2 Score=48.05 Aligned_cols=203 Identities=13% Similarity=0.026 Sum_probs=111.2
Q ss_pred CeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc-CCCCC
Q 002475 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES-LPLET 722 (917)
Q Consensus 644 ~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~-a~Ie~ 722 (917)
++|+|+|-|..+...++.+.+.-..+.-.++++... |... ..+ . -..+.+..-|||+...|++ ++.+-
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~~~~f~~vv~~~q--e~~~--~~~------~-~e~~~fh~fdaTs~~rl~~~~n~~~ 70 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYSNHNFYIVVVKNQ--ESLI--PKN------Y-PETFAFHCFDATSSFRLLQVLNDEV 70 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhcCceEEEEEeech--hhcc--ccc------C-cceEEEEEeCCccHHHHHHHhhhHh
Confidence 579999999999999988875433344444444321 1111 011 1 1246788999999988876 88999
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhHHHhhhcCCcceEEEEEec--c
Q 002475 723 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILD--S 800 (917)
Q Consensus 723 adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~s~~~~i~kl~ra~~~~~Iv~Ei~d--~ 800 (917)
.|++|+.-|. -++.-+.=.+|...++. + ..|+...| +
T Consensus 71 ~~Afi~~qd~----------~et~~i~k~lr~~f~n~---------e----------------------~ei~~~~~~l~ 109 (471)
T COG3400 71 SDAFIIIQDF----------KETRIIHKILRTHFKNM---------E----------------------VEISVKRDELE 109 (471)
T ss_pred hhhheehhhH----------HHHHHHHHHHHHhccCc---------E----------------------EEEEEEeCCCc
Confidence 9999998642 34566666677777653 0 11122222 2
Q ss_pred cccchhhccCCCcEEecHHHHHHHHHHHH--hhhhHHHHHHHHHcccCceEEEEcCcccccCCCCccHHHHHHHhccCCc
Q 002475 801 RTRNLVSVSRISDYVLSNELVSMALAMVA--EDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQE 878 (917)
Q Consensus 801 ~~~~ll~~~~~~d~V~S~~lv~~~LA~~a--~~p~i~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~~l~~~~r~~g~ 878 (917)
.|.++-. .. .+.+-.. ++|+... .=|++..--.++=-+.|.-+.+ .+ +.++...|.-+.. .+++..
T Consensus 110 ~Nee~~d-~k-~~lid~~----~vL~~~F~~~Lp~I~~tp~~iGLgkGEImEI-~v----p~gSifaYrhi~s-I~qk~~ 177 (471)
T COG3400 110 NNEENKD-EK-LILIDEF----EVLANKFISRLPNIPSTPREIGLGKGEIMEI-DV----PFGSIFAYRHIGS-IRQKEY 177 (471)
T ss_pred cchhhcc-cc-eeecchH----HHHHHHHHHhcCCccccchhcccccceEEEE-ec----CCCchhhhhhhhh-hhhhee
Confidence 2222111 01 1122111 2222111 1122221111111122322332 22 3356777777655 467777
Q ss_pred EEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 879 IVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 879 ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
-++++-|.+ .+.+ |.. .+++++||+|.|+|+.
T Consensus 178 RIvl~YRN~--klll-~~~---slvlqp~D~lLVvG~P 209 (471)
T COG3400 178 RIVLLYRND--KLLL-STK---SLVLQPRDILLVVGNP 209 (471)
T ss_pred EEEEEEECC--EEEE-ecc---ceEecCCCEEEEeCCh
Confidence 788866643 3444 664 8999999999999975
No 49
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.45 E-value=0.094 Score=63.52 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=52.3
Q ss_pred ceEEEecCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
..+.+.+.++++|+++.|+..+. .++.+++++| +++. +.|.++++|++||+|++.|+.+++.++
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 35566666789999999998764 5899999987 4665 469999999999999999999876554
No 50
>PRK05326 potassium/proton antiporter; Reviewed
Probab=93.13 E-value=0.099 Score=63.44 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=50.4
Q ss_pred eEEEecCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
++.+.+.++++|++++|+... .++.++++.| +|+. +.|+++++|++||+++++++.++..+.
T Consensus 418 ~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R---~g~~-~~p~~~t~L~~GD~l~l~~~~~~l~~l 479 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRLP-RGALIALIIR---DGKL-LVPTGSTRLKAGDVLLVLGPERDLPAL 479 (562)
T ss_pred EEEECCCCcccCCCHHHcCCC-CCcEEEEEEE---CCEE-eCCCCCCeECCCCEEEEEECHHHHHHH
Confidence 445556678999999999632 4799999997 4654 799999999999999999998876544
No 51
>PRK04972 putative transporter; Provisional
Probab=92.68 E-value=0.12 Score=62.62 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=51.5
Q ss_pred ceEEEecCCccCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.|..+...+++.|+|++|+..+.+++.+++|+|. + ..+.|.++++|+.||+|.+.|+.+++.+.
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~---g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l 367 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRS---Q-IEMPIDDNVVLNKGDVLQVSGDARRVKTI 367 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEecC---C-cccCCCCCCEecCCCEEEEEECHHHHHHH
Confidence 3455666789999999999865578999999983 3 34567889999999999999998876543
No 52
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.28 E-value=0.16 Score=61.65 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=51.9
Q ss_pred ceEEEecCCccCCCcHHhHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~-----~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.|..+...+++.|+|++|+..+ .+++.+.+|.|. |+. +.|.+|++|+.||+|.+.|+.+++.+.
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~---g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~ 372 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRD---DQP-LPILPETVLQRGDVVTLVGTPQDVDRA 372 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeC---Ccc-ccCCCCCEecCCCEEEEEeCHHHHHHH
Confidence 4445566789999999999854 468999999983 443 478999999999999999999876553
No 53
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.25 E-value=0.55 Score=49.39 Aligned_cols=72 Identities=11% Similarity=0.237 Sum_probs=49.3
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|+|+.|...++.|.+. |..|++|+....++..+ +.+.+ .+.+. ...++++.+.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~---ga~V~VIs~~~~~~l~~-l~~~~---------~i~~~------~~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY---GAHIVVISPELTENLVK-LVEEG---------KIRWK------QKEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCHHHHH-HHhCC---------CEEEE------ecCCChhhcC
Confidence 357999999999999999999865 67899998644333222 22211 13332 2345667789
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.||.||+.+++
T Consensus 70 ~adlViaaT~d 80 (202)
T PRK06718 70 DAFLVIAATND 80 (202)
T ss_pred CceEEEEcCCC
Confidence 99988888764
No 54
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.20 E-value=0.5 Score=49.83 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=51.4
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
.++++|+|+|+.+..-++.|.+. |..|+|++....++..+ +.+.| .+.++.+++.. ++ ++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~---ga~VtVvsp~~~~~l~~-l~~~~---------~i~~~~~~~~~-~d-----l~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA---GAQLRVIAEELESELTL-LAEQG---------GITWLARCFDA-DI-----LEG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHH-HHHcC---------CEEEEeCCCCH-HH-----hCC
Confidence 46999999999999999999865 78899999766544433 33311 36678888773 33 467
Q ss_pred ccEEEEecCC
Q 002475 723 FDSILILADE 732 (917)
Q Consensus 723 adavIilsd~ 732 (917)
++.||+.+++
T Consensus 70 ~~lVi~at~d 79 (205)
T TIGR01470 70 AFLVIAATDD 79 (205)
T ss_pred cEEEEECCCC
Confidence 8888887754
No 55
>PRK03818 putative transporter; Validated
Probab=92.10 E-value=0.17 Score=61.24 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=51.1
Q ss_pred ceEEEecCCccCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.|..+...++++|++++|+..+ .+++.+.+|+|. | ..+.|.++++|+.||+|.+.|+.+++.+.
T Consensus 291 ~E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~---g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~l 355 (552)
T PRK03818 291 SERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRA---G-VELVASPDLSLQFGDILNLVGRPEAIDAV 355 (552)
T ss_pred EEEEEEcChhccCCcHHHhcccccCCeEEEEEeEC---C-eecCCCCCCEEecCCEEEEEECHHHHHHH
Confidence 3445556789999999999865 468999999983 4 34567889999999999999999876543
No 56
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=91.75 E-value=0.2 Score=42.90 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=31.2
Q ss_pred CccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 863 EISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 863 ~ltf~~l~~~~r~~g~ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
+.+..|+..+ ...+..++|++++ + ..+.|.+ ++++++||.|++++..
T Consensus 14 gk~l~el~l~-~~~~~~i~~i~R~-~--~~~~p~~---~~~l~~gD~l~v~g~~ 60 (71)
T PF02080_consen 14 GKTLKELDLP-ERYGVRIVAIKRG-G--EIIIPDG---DTVLQAGDILIVVGDP 60 (71)
T ss_dssp TEBHHHCTHH-CHHTEEEEEEEET-E--EEES--T---T-BE-TTEEEEEEEEH
T ss_pred CCCHHHCCCC-ccCCEEEEEEEEC-C--EEECCCC---CCEECCCCEEEEEECH
Confidence 4555664332 1239999999886 3 3677876 8999999999999864
No 57
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.49 E-value=2.1 Score=49.40 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=86.7
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+.++|+|.|..+..++..|...+ ...|.+++++++.++++.... ..++.++.=|+.+.+.|.++ +.+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-----d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-----DGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHH-HhcCC
Confidence 57999999999999998887542 279999999998888764421 23688999999999999887 55559
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCC----CHHHHHHcCCCeEEEeccHHHHHHHHHHHHcC
Q 002475 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD----NEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538 (917)
Q Consensus 463 aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e----~~~~l~~~Gad~VevV~~~el~a~lLa~~~~~ 538 (917)
.||.+.+- .-+...+.+|+..+ ++.+--..+.+ ..+.++++|... | -.+=..
T Consensus 71 ~VIn~~p~----~~~~~i~ka~i~~g-------v~yvDts~~~~~~~~~~~~a~~Agit~---v----------~~~G~d 126 (389)
T COG1748 71 LVINAAPP----FVDLTILKACIKTG-------VDYVDTSYYEEPPWKLDEEAKKAGITA---V----------LGCGFD 126 (389)
T ss_pred EEEEeCCc----hhhHHHHHHHHHhC-------CCEEEcccCCchhhhhhHHHHHcCeEE---E----------cccCcC
Confidence 99999865 23443334444332 12332222222 344556677543 2 345678
Q ss_pred CcHHHHHHH
Q 002475 539 PGLAQIWED 547 (917)
Q Consensus 539 Pg~~~vl~~ 547 (917)
||+.+++..
T Consensus 127 PGi~nv~a~ 135 (389)
T COG1748 127 PGITNVLAA 135 (389)
T ss_pred cchHHHHHH
Confidence 888877653
No 58
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.32 E-value=2.1 Score=45.11 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=59.7
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
..+++|+|.|..+..-++.|... +..|+|++.+. ++++...+ ..++.++.|+.. .++| ..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 45899999999999988888764 45666665543 34444332 126888888876 4454 56
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
++.||+.+++ .+.|..++..++..+
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARARG 94 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHcC
Confidence 8889998876 567888888777653
No 59
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.74 E-value=0.53 Score=47.61 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhhhccCCCCCc-C-----CccCeeee-ehhhhhhHHHHHHHHHHH
Q 002475 312 SSFAEALWLSWTFVADSGNHADR-V-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGygd~~-~-----t~~gRi~~-v~lil~Gi~i~a~~ig~i 361 (917)
.++..|+|+++.++|+.|+|+.. . +..+.++. .++++++++++++++|.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 57899999999999999999974 3 45666666 566677778888888764
No 60
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.21 Score=56.27 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHhhhccCCCCCcCCc---cCeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccCeEEEE
Q 002475 312 SSFAEALWLSWTFVADSGNHADRVGT---GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILIL 388 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGygd~~~t~---~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~~~~lr~G~~~~~~~~HIII~ 388 (917)
.+|..||-|++.|=||+|||--..|. .+-+..++-.+.|.++=++++|.+...+.+ -+++-......+|-|||
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar----PkKRAeTl~FS~~AVI~ 186 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR----PKKRAETLIFSDHAVIA 186 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chhhhheeeeccceEEE
Confidence 37899999999999999999864332 223333455577888778888877654433 22222234567888887
Q ss_pred e
Q 002475 389 G 389 (917)
Q Consensus 389 G 389 (917)
=
T Consensus 187 ~ 187 (400)
T KOG3827|consen 187 L 187 (400)
T ss_pred e
Confidence 4
No 61
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.41 E-value=1.4 Score=50.76 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=56.6
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 385 III~G~g~~~~~li~eL~~~~~~~~~~~-~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
|+|+|.|..+..+++.|.+.. .. .|++.+++.+.++...++. ...++.++.-|..|.+.|.++ +++++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-----~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-----PFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-----CE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 789999998888998887532 23 8999999999888776432 245789999999999998888 888999
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
||-+...
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9988864
No 62
>PRK03818 putative transporter; Validated
Probab=89.74 E-value=0.52 Score=57.02 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=51.7
Q ss_pred ceEEEecCCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.++.+. .+++.|+++.|+..+. .++.+.+++| ++ ....|.++++|++||+|++.|+.++..+.
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 466666 6778999999998764 5799999987 45 45678899999999999999999876544
No 63
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=0.43 Score=48.68 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=39.7
Q ss_pred CCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 862 EEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 862 ~~ltf~~l~~~~r~~g~ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
.+.|.+|+.. .-..|.-+|+++|++ ++++||+. ++++.+||.||+-|.+
T Consensus 132 ~gktLg~l~L-~t~tGvrVIAIRRG~--~wi~~Pd~---~~~Ir~gDvLIarG~~ 180 (204)
T COG3273 132 AGKTLGELDL-ATNTGVRVIAIRRGE--RWIYGPDE---DTKIREGDVLIARGTD 180 (204)
T ss_pred cccchhhhcc-ccccceEEEEEecCC--ccccCCCc---cceeccCCEEEEecch
Confidence 3567788754 345699999999975 68999985 9999999999998854
No 64
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.78 E-value=5.5 Score=45.33 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=61.0
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhccccCCcc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e---------------------~~e~~l~~~~~~~~~~~ 439 (917)
.+.||+|+|.|..+..+++.|..+. -..++++|.|.- +.+.+.+++..-.....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-----vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-----IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-----CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 4679999999999999999998753 236777887741 12221111111112345
Q ss_pred EEEEEECCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 440 V~~i~Gd~~d~e~L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
+..+.++.+ .+.+++. ++++|.||..+++ .+....+.-.+++.+
T Consensus 98 i~~~~~~~~-~~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVT-VEELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCC-HHHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 666766665 3445444 6789999999965 455555555565554
No 65
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=86.90 E-value=8.1 Score=41.35 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=56.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|+.+..=++.|.... ..+.|+...-.++++.... ...+.++..+. ++++| +.|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-----A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g~ 86 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-----CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KDK 86 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CCC
Confidence 458999999998887777777542 2444444443344544332 23466666544 45565 568
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
..||+.|+| .+.|-.++-.++..+
T Consensus 87 ~LViaATdD------~~vN~~I~~~a~~~~ 110 (223)
T PRK05562 87 HLIVIATDD------EKLNNKIRKHCDRLY 110 (223)
T ss_pred cEEEECCCC------HHHHHHHHHHHHHcC
Confidence 999999976 677888888887753
No 66
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.72 E-value=6 Score=39.90 Aligned_cols=69 Identities=26% Similarity=0.181 Sum_probs=54.7
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
|+|+|. |..|..++++|... ++.|+++-++++..+. ..++.++.||..+++.+.++ +..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689996 77899999999864 4677777777776554 24688999999999988885 448999
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9998865
No 67
>PRK04972 putative transporter; Provisional
Probab=86.36 E-value=1.2 Score=54.00 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=44.8
Q ss_pred cCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 564 l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
+.||+++|+..+. .++.+.+++| +++ ...|.++++|++||+|++.|+.++..+.
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998764 5799999987 455 4778999999999999999999876443
No 68
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=85.31 E-value=1.2 Score=51.28 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=43.9
Q ss_pred CCccCCCcHHhHhhhCC-CeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccC
Q 002475 561 WPQLDDLRFEEVVISFP-DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (917)
Q Consensus 561 ~p~l~G~tf~el~~~~~-~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~ 620 (917)
..+++|+.+++++ +| .+.+.+|.| +|+ .+.|.++++|++||++++++.+.+...
T Consensus 422 ~~~~ig~~lr~l~--~p~~~~~~~v~R---d~q-~i~p~g~t~l~~gD~l~v~~~~~d~~~ 476 (574)
T COG3263 422 DKWCVGAALRNLR--MPKWTRIAAVFR---DGQ-LIHPQGSTRLREGDVLCVIGSERDLRA 476 (574)
T ss_pred CCcccchhhhhcc--CCccceeeeEEe---cCc-eeccCCCceeecCCEEEEEeccccHHH
Confidence 4578899999886 44 578888887 454 589999999999999999999876543
No 69
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=85.21 E-value=1.9 Score=45.63 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=56.6
Q ss_pred EEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002475 646 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (917)
Q Consensus 646 ilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ad 724 (917)
|+|.|. |..|..+++.|.+ ++.+|+++-..+..++.+.+.+.| +.++.+|..+.+.|.++ +..+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~g----------~~vv~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQALG----------AEVVEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHTT----------TEEEES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhccc----------ceEeecccCCHHHHHHH-HcCCc
Confidence 688997 7889999999987 478899988777666666666533 24579999999999876 88999
Q ss_pred EEEEecCC
Q 002475 725 SILILADE 732 (917)
Q Consensus 725 avIilsd~ 732 (917)
+|++++..
T Consensus 67 ~v~~~~~~ 74 (233)
T PF05368_consen 67 AVFSVTPP 74 (233)
T ss_dssp EEEEESSC
T ss_pred eEEeecCc
Confidence 99988863
No 70
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.84 E-value=2 Score=43.55 Aligned_cols=90 Identities=11% Similarity=0.202 Sum_probs=49.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
-.+++|||||..+..+++.|... +..|++.|.||-..-.... .++.+. .|+++ +.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~alqA~~--------dGf~v~--------~~~~a-~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIRALQAAM--------DGFEVM--------TLEEA-LRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHHHHHHHH--------TT-EEE---------HHHH-TTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHHHHHhhh--------cCcEec--------CHHHH-HhhC
Confidence 45799999999999999999753 6799999999855322221 122222 23343 5688
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCC
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDL 505 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~ 505 (917)
+.+|..|... ++...--++.+.+ .-+++-+-.-
T Consensus 80 di~vtaTG~~--------~vi~~e~~~~mkd---gail~n~Gh~ 112 (162)
T PF00670_consen 80 DIFVTATGNK--------DVITGEHFRQMKD---GAILANAGHF 112 (162)
T ss_dssp SEEEE-SSSS--------SSB-HHHHHHS-T---TEEEEESSSS
T ss_pred CEEEECCCCc--------cccCHHHHHHhcC---CeEEeccCcC
Confidence 9888888652 2222333445554 2367665543
No 71
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=84.54 E-value=5.4 Score=37.23 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHHccc--------------------CceEEEEcCcccccCCCCccHHHH
Q 002475 810 RISDYVLSNELVSMALAMVAEDKQINRVLEELFAEE--------------------GNEMCIKPAEFYLFDQEEISFFDI 869 (917)
Q Consensus 810 ~~~d~V~S~~lv~~~LA~~a~~p~i~~vl~eLl~~e--------------------G~el~i~~~~~~~~~~~~ltf~~l 869 (917)
.++++|.-.++--.+||+...-|++..++-.|+... ++++|-.+.+... .+++|.++
T Consensus 9 ~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f---~G~~F~~~ 85 (101)
T PF03493_consen 9 FADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAF---VGMTFTEA 85 (101)
T ss_dssp TT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGG---TTSBHHHH
T ss_pred cCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhh---CCCcHHHH
Confidence 446778888999999999999999999998877521 3467776665443 68999999
Q ss_pred HHHh-ccCCcEEEEEE
Q 002475 870 MIRG-RQRQEIVIGYR 884 (917)
Q Consensus 870 ~~~~-r~~g~ivIG~~ 884 (917)
...+ ++.|.++||++
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 8866 45699999985
No 72
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=84.07 E-value=5.7 Score=51.42 Aligned_cols=104 Identities=18% Similarity=0.127 Sum_probs=70.2
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccC--------CCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHH
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD 452 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~--------~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~ 452 (917)
...+|+|+|.|..+...++.|....... .....|+++|.+++..+...+.+ .++..+..|..|.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHH
Confidence 3568999999999998888886531100 11235888999888777655431 245678889999999
Q ss_pred HhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEe
Q 002475 453 LKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM 502 (917)
Q Consensus 453 L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v 502 (917)
|.++ ++.+|+||++++. ..+..++.++-+.+ +|++.+-
T Consensus 642 L~~~-v~~~DaVIsalP~-------~~H~~VAkaAieaG----kHvv~ek 679 (1042)
T PLN02819 642 LLKY-VSQVDVVISLLPA-------SCHAVVAKACIELK----KHLVTAS 679 (1042)
T ss_pred HHHh-hcCCCEEEECCCc-------hhhHHHHHHHHHcC----CCEEECc
Confidence 9875 4569999999965 23444555554443 3466554
No 73
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=83.74 E-value=3.3 Score=41.79 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=53.5
Q ss_pred EEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002475 646 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (917)
Q Consensus 646 ilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ad 724 (917)
|+|+|. |..|..++++|.+. |.+|+.+...+. +.+. ...+.++.||..|.+.+.++ +..+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~R~~~--~~~~------------~~~~~~~~~d~~d~~~~~~a-l~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALVRSPS--KAED------------SPGVEIIQGDLFDPDSVKAA-LKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEESSGG--GHHH------------CTTEEEEESCTTCHHHHHHH-HTTSS
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEecCch--hccc------------ccccccceeeehhhhhhhhh-hhhcc
Confidence 689997 88899999999875 688999986543 2222 12367799999999888875 55899
Q ss_pred EEEEecCC
Q 002475 725 SILILADE 732 (917)
Q Consensus 725 avIilsd~ 732 (917)
+|+.+...
T Consensus 63 ~vi~~~~~ 70 (183)
T PF13460_consen 63 AVIHAAGP 70 (183)
T ss_dssp EEEECCHS
T ss_pred hhhhhhhh
Confidence 99998864
No 74
>CHL00194 ycf39 Ycf39; Provisional
Probab=82.13 E-value=9.2 Score=42.64 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=51.5
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 384 HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+|+|.|. |-.|..++++|... ++.|+.+.++++..... . ..++.++.||.++++.|.++ ++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~~~l-~-------~~~v~~v~~Dl~d~~~l~~a-l~g~d 66 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKASFL-K-------EWGAELVYGDLSLPETLPPS-FKGVT 66 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHhhhH-h-------hcCCEEEECCCCCHHHHHHH-HCCCC
Confidence 6899996 56788899999853 56777777765443221 1 23578899999999999765 55688
Q ss_pred EEEEecC
Q 002475 463 AIIVLAS 469 (917)
Q Consensus 463 aVIilt~ 469 (917)
+||-+..
T Consensus 67 ~Vi~~~~ 73 (317)
T CHL00194 67 AIIDAST 73 (317)
T ss_pred EEEECCC
Confidence 8888754
No 75
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=81.54 E-value=6.3 Score=42.16 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|+|+.+..=++.|.++ |..|+||.....+|.... .+. . .+.++..++. +++ ++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVap~i~~el~~l-~~~-------~--~i~~~~r~~~-~~d-----l~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK---GCYVYILSKKFSKEFLDL-KKY-------G--NLKLIKGNYD-KEF-----IK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCCCHHHHHH-HhC-------C--CEEEEeCCCC-hHH-----hC
Confidence 356999999999998877777665 788999987654444332 221 1 2555666653 333 46
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.++.|++.|++
T Consensus 85 g~~LViaATdD 95 (223)
T PRK05562 85 DKHLIVIATDD 95 (223)
T ss_pred CCcEEEECCCC
Confidence 78888887754
No 76
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=80.87 E-value=10 Score=40.21 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
...++|+|.|+.+..=++.|.... .++.|+.+.-.+++.....+ ..+..+. +..+.+.+.. |
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g-----a~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~-----~ 73 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG-----ADVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD-----A 73 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-----CEEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----c
Confidence 457999999998887777777542 34555555544566665543 2344455 5566666655 8
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
..||+.|+| ...|-.+...++..+
T Consensus 74 ~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 74 FLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred eEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 999999976 566777777887754
No 77
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=80.84 E-value=5.7 Score=46.08 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHHhhhccCCCC---Cc-CCccCeeeeehhhhhh
Q 002475 310 SDSSFAEALWLSWTFVADSGNHA---DR-VGTGPRIVSVSISSGG 350 (917)
Q Consensus 310 e~~s~~dAly~~~~tvTTvGygd---~~-~t~~gRi~~v~lil~G 350 (917)
.+.++.++++-++..+.|+|.+- .+ -+..+|++.++.|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 37999999999999999999743 22 3556777766666654
No 78
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.77 E-value=7.5 Score=40.77 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=61.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|.|+|+.+..+++.|... |..|+++|.+++.++...+.+ +..++ +. +.+ ...++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~-------g~~~v--~~---~~l---~~~~~ 86 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELF-------GATVV--AP---EEI---YSVDA 86 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHc-------CCEEE--cc---hhh---ccccC
Confidence 35799999999999999998753 578889999887766654321 12222 11 222 22368
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcCCC
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVGGE 517 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d----~e~~~~l~~~Gad 517 (917)
|.++-++-. ++...-.++++.. ..|+...++ ++..+.++..|+.
T Consensus 87 Dv~vp~A~~---------~~I~~~~~~~l~~---~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 87 DVFAPCALG---------GVINDDTIPQLKA---KAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred CEEEecccc---------cccCHHHHHHcCC---CEEEECCcCccCCHhHHHHHHHCCCE
Confidence 888755422 2333334455543 124444444 4666777877864
No 79
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=80.40 E-value=9.1 Score=45.87 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCCC--c-CCccC------eeeeehhhhhh-HHHHH
Q 002475 286 AKLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD--R-VGTGP------RIVSVSISSGG-MLIFA 355 (917)
Q Consensus 286 ~~ll~ll~~~l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd~--~-~t~~g------Ri~~v~lil~G-i~i~a 355 (917)
.+.++.+++-+++++++++.+...+..++.++++-++.++.|+|-+-. + .+..+ +++.++.|+.| +.+++
T Consensus 397 ~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~ 476 (499)
T COG0168 397 RKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILT 476 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhh
Confidence 334555566677777777777666555899999999999999997532 2 22333 66656656555 55555
Q ss_pred HHHHH
Q 002475 356 MMLGL 360 (917)
Q Consensus 356 ~~ig~ 360 (917)
+++..
T Consensus 477 ~lv~~ 481 (499)
T COG0168 477 VLVLF 481 (499)
T ss_pred HHHhh
Confidence 55443
No 80
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=79.71 E-value=3.5 Score=47.52 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=52.3
Q ss_pred EEEEccccCHHHHHHHHHHhcCCCC-eEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002475 646 ILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (917)
Q Consensus 646 ilI~Gwg~~~~~li~~L~~~~~~g~-~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ad 724 (917)
|+|+|.|..|..+++.|.+.. +. ++++.+.+ .++.+.+.+ .+....+..+..|..|.+.|+++ +.++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va~r~--~~~~~~~~~------~~~~~~~~~~~~d~~~~~~l~~~-~~~~d 69 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVADRN--PEKAERLAE------KLLGDRVEAVQVDVNDPESLAEL-LRGCD 69 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEEESS--HHHHHHHHT--------TTTTEEEEE--TTTHHHHHHH-HTTSS
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEEECC--HHHHHHHHh------hccccceeEEEEecCCHHHHHHH-HhcCC
Confidence 789999999999999998652 23 77777764 456666554 11234577899999999999888 88889
Q ss_pred EEEEecC
Q 002475 725 SILILAD 731 (917)
Q Consensus 725 avIilsd 731 (917)
.||-++.
T Consensus 70 vVin~~g 76 (386)
T PF03435_consen 70 VVINCAG 76 (386)
T ss_dssp EEEE-SS
T ss_pred EEEECCc
Confidence 9998875
No 81
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=79.34 E-value=14 Score=38.92 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=49.0
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCCh--HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~--e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
|+|+|. |..|..+++.|... ++.|.+.-+++ +..+.+ + ..++.++.||..+++.|.++ ++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l-~-------~~g~~vv~~d~~~~~~l~~a-l~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQL-Q-------ALGAEVVEADYDDPESLVAA-LKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHH-H-------HTTTEEEES-TT-HHHHHHH-HTTC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhh-h-------cccceEeecccCCHHHHHHH-HcCC
Confidence 678886 78899999999873 35555554443 223222 2 23567889999999999775 7799
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
++||+++..
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999999974
No 82
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.35 E-value=8.1 Score=41.16 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=68.7
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh----------HHHHHHHHhhccccCCccEE-EEEECCCC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVI-CRSGSPLI 449 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~----------e~~e~~l~~~~~~~~~~~V~-~i~Gd~~d 449 (917)
...+++|.|+|+++..+++.|.+. +..+|.++|.+. +.++...+.. .+. +-.++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-----G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-------~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-----GGKVLAVSDPDGYIYDPGITTEELINYAVALG-------GSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC-------CccccCcccccC
Confidence 356999999999999999998753 346888888877 5555432211 111 11234445
Q ss_pred HHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcCCCeEEEeccH
Q 002475 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVGGELIETVVAH 525 (917)
Q Consensus 450 ~e~L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d----~e~~~~l~~~Gad~VevV~~~ 525 (917)
.+.+.. + +||.+|-++.. |+...-.++++ ++++|++.-| ++..+.|+.-|+ ++.|+
T Consensus 90 ~~~l~~--~-~~DVlipaA~~---------~~i~~~~a~~l----~a~~V~e~AN~p~t~~a~~~L~~~Gi----~v~Pd 149 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG---------NVIDLENAKKL----KAKVVAEGANNPTTDEALRILHERGI----VVAPD 149 (217)
T ss_pred ccccee--c-cccEEeecccc---------CccChhhHhhc----CccEEEeCCCCCCCHHHHHHHHHCCc----EEECh
Confidence 455553 3 78988888743 22233334444 2457776554 344556676773 35566
Q ss_pred HHH
Q 002475 526 DVI 528 (917)
Q Consensus 526 el~ 528 (917)
-+.
T Consensus 150 ~~~ 152 (217)
T cd05211 150 IVA 152 (217)
T ss_pred HHh
Confidence 553
No 83
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=78.15 E-value=7.2 Score=42.81 Aligned_cols=70 Identities=26% Similarity=0.232 Sum_probs=54.7
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
...+++|.|... .|..++++|.. +++.++|+.+++++++++..++..+. +..+.++.-|-++++++.+.-
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~------~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLAR------RGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHH------CCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHH
Confidence 356899999887 57888888875 47899999999999888877654332 456788888999988888754
No 84
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.30 E-value=8.8 Score=41.60 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=52.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
.+++|+|.+. .+..++++|.+. +..|+++.++++..+...........+.++.++.+|.++++.+++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK------GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 5789999765 578888888752 5778888877766555433211100124578899999999887651
Q ss_pred CcccccEEEEecCC
Q 002475 457 SVSKARAIIVLASD 470 (917)
Q Consensus 457 gI~~A~aVIilt~d 470 (917)
.....+.+|.++..
T Consensus 78 ~~~~id~vv~~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVNNAGY 91 (280)
T ss_pred hcCCeeEEEECCcc
Confidence 12345777776643
No 85
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=76.28 E-value=22 Score=33.03 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=48.7
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...+++|+|.|+.+..-++.|.+. +..|.++..+.+..+ + .+.+. .... + ..++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~~~~~----~--------~i~~~-~~~~-----~-~~l~~ 60 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA------GAKVTVISPEIEFSE----G--------LIQLI-RREF-----E-EDLDG 60 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSEHHHH----T--------SCEEE-ESS------G-GGCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEECCchhhhh----h--------HHHHH-hhhH-----H-HHHhh
Confidence 356899999999988888888643 456666655432222 1 12222 2222 2 33777
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
++.|++.+++ .+.|-.+...+|+.+
T Consensus 61 ~~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 61 ADLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp ESEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred heEEEecCCC------HHHHHHHHHHHhhCC
Confidence 8999999976 667777777777654
No 86
>PRK04148 hypothetical protein; Provisional
Probab=76.01 E-value=5.5 Score=39.17 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++++|.| .+..++..|.+. ++.|+.+|.+++.++...+ ..+.++.+|-.+++. +- -+.|
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a 78 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNA 78 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcC
Confidence 3689999999 677888888742 6899999999988776643 246788898887643 11 2367
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.|...-..
T Consensus 79 ~liysirpp 87 (134)
T PRK04148 79 KLIYSIRPP 87 (134)
T ss_pred CEEEEeCCC
Confidence 888877643
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=75.92 E-value=13 Score=41.44 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=51.6
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~a 723 (917)
+|+|.|. |-.|..+++.|.+. |.+|+.+...+ +....+. ...+.++.||.+|++.|.++ ++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~---g~~V~~l~R~~--~~~~~l~----------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE---GYQVRCLVRNL--RKASFLK----------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC---CCeEEEEEcCh--HHhhhHh----------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 6899997 77899999999864 78888887543 2222221 12356789999999999765 5678
Q ss_pred cEEEEecC
Q 002475 724 DSILILAD 731 (917)
Q Consensus 724 davIilsd 731 (917)
|+|+-++.
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 99888764
No 88
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=75.89 E-value=15 Score=41.30 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...+++|+|.|..+..+++.|... +...|++++.++++.+....++ +. .+ .+.+++.++ +.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~-----g~~~V~v~~r~~~ra~~la~~~-----g~--~~-----~~~~~~~~~-l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK-----GVAEITIANRTYERAEELAKEL-----GG--NA-----VPLDELLEL-LNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHc-----CC--eE-----EeHHHHHHH-Hhc
Confidence 356899999999988888888642 2467888999987766655432 11 11 123445443 677
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEeccHHH
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDV 527 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~Gad~VevV~~~el 527 (917)
||.||.++....+ .++...+...... +..+++-+..|.+.+.-- ...+.|.++.-+++
T Consensus 239 aDvVi~at~~~~~-----~~~~~~~~~~~~~---~~~~viDlavPrdi~~~v-~~l~~v~l~~vDdl 296 (311)
T cd05213 239 ADVVISATGAPHY-----AKIVERAMKKRSG---KPRLIVDLAVPRDIEPEV-GELEGVRLYTIDDL 296 (311)
T ss_pred CCEEEECCCCCch-----HHHHHHHHhhCCC---CCeEEEEeCCCCCCchhh-ccCCCcEEEEHHHh
Confidence 9999999976211 2222222211111 246888888877644221 11222334555655
No 89
>PLN03223 Polycystin cation channel protein; Provisional
Probab=75.89 E-value=17 Score=47.50 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhhhccCCCC-----C-c----CCccCeee-eehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 312 SSFAEALWLSWTFVADSGNHA-----D-R----VGTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGygd-----~-~----~t~~gRi~-~v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
.+|..+++-.+..+. |-.+ . . ....|.++ ..+++++.++++-+++++|.+.+.+.
T Consensus 1360 STf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1360 SDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred cCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776665554 3222 1 1 12334454 44555666777788999888888764
No 90
>PRK09186 flagellin modification protein A; Provisional
Probab=75.69 E-value=9.9 Score=40.42 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=45.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|.+. +..|+++..+++..+....++.....+..+.++.+|.++++.+.++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 35788999765 578888888753 5678888877766665544321111223456678888888877653
No 91
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=75.36 E-value=40 Score=33.22 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=47.6
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
++|.|+|. |..+..++-.|.... -...++|+|.+++..+....++.+-.......+..+. .+.++ +.+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~-----~~~a 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEA-----LKDA 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGG-----GTTE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccc-----cccc
Confidence 47999999 998888888887542 3467999999876554443333110001112222232 34444 4578
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||++.+.
T Consensus 71 Divvitag~ 79 (141)
T PF00056_consen 71 DIVVITAGV 79 (141)
T ss_dssp SEEEETTST
T ss_pred cEEEEeccc
Confidence 889988876
No 92
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.30 E-value=32 Score=39.24 Aligned_cols=98 Identities=17% Similarity=0.072 Sum_probs=57.9
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhccccCCcc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e---------------------~~e~~l~~~~~~~~~~~ 439 (917)
.+-+|+|+|.|..|..++..|..+. -..++++|.|.- +.+...+++..-.....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-----vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-----VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-----CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 4679999999999999999998653 236778887631 11111111100011234
Q ss_pred EEEEEECCCCHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 440 V~~i~Gd~~d~e~L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
+..+.++.+. +.+... ++++|.||.++++ ........-.+++.+
T Consensus 98 v~~~~~~~~~-~~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 98 VEAIVQDVTA-EELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEeccCCH-HHHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 5566666544 333333 6788999998865 445555555555544
No 93
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=75.10 E-value=11 Score=40.41 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.1
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCC-HHHHhccCcc
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d-~e~L~rAgI~ 459 (917)
.+.|+|+|. |..+..++++|... ++.|++..++++..+.... .+.++.++.||.++ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 457999996 66788889998752 4667766666655433221 12358899999998 4566544224
Q ss_pred cccEEEEecCC
Q 002475 460 KARAIIVLASD 470 (917)
Q Consensus 460 ~A~aVIilt~d 470 (917)
.++.||..+..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78988877653
No 94
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.82 E-value=7.2 Score=45.09 Aligned_cols=77 Identities=19% Similarity=0.111 Sum_probs=60.9
Q ss_pred CeEEEEccccCHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 644 EKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 644 ~hilI~Gwg~~~~~li~~L~~~~~~g-~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
.++||+|-|.+|..++..|.+. + .+|++.+..+ +.|..+.+.. ..++..+.-|+.+.+.|.++ |.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~---~d~~V~iAdRs~--~~~~~i~~~~-------~~~v~~~~vD~~d~~al~~l-i~~ 68 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN---GDGEVTIADRSK--EKCARIAELI-------GGKVEALQVDAADVDALVAL-IKD 68 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC---CCceEEEEeCCH--HHHHHHHhhc-------cccceeEEecccChHHHHHH-Hhc
Confidence 5899999999999999999865 3 7899988753 5677665532 11467789999999999888 677
Q ss_pred ccEEEEecCCC
Q 002475 723 FDSILILADES 733 (917)
Q Consensus 723 adavIilsd~~ 733 (917)
+|.||.+....
T Consensus 69 ~d~VIn~~p~~ 79 (389)
T COG1748 69 FDLVINAAPPF 79 (389)
T ss_pred CCEEEEeCCch
Confidence 79999998754
No 95
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.51 E-value=12 Score=36.60 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=52.2
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...+++|+|.|..+..++..|...+ -..|.++.++.++.+.+.+.+ .+..+.++. .+++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-----~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-----~~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-----AKEITIVNRTPERAEALAEEF----GGVNIEAIP-----LEDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-----SSEEEEEESSHHHHHHHHHHH----TGCSEEEEE-----GGGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHc----Cccccceee-----HHHHH-HHHhh
Confidence 4679999999999999999998642 356888999998888776653 223343332 22333 23668
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
||.||..|+.
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999999876
No 96
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=74.50 E-value=12 Score=46.77 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhc-------CC----CHHHHHHHHHHhhhccCCCCCc---CCccCeeeeehhhhhhH
Q 002475 290 ALLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGGM 351 (917)
Q Consensus 290 ~ll~~~l~lil~g~~~~~~~e-------~~----s~~dAly~~~~tvTTvGygd~~---~t~~gRi~~v~lil~Gi 351 (917)
++++.+++++++++++|+.+| +. -+.+||++++. .-|.||...+ .+.+..++.+++|++|.
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVs-tRTAGFntVdls~Lspatlvl~iiLMyIGa 660 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVS-TRTAGFTVVDLSQLHPAIQVSYMLMMYVSV 660 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcc-cccccccccchHhcChhHHHHHHHHHHhcc
Confidence 344557778888888888876 22 36888888865 4678987654 23445555555555543
No 97
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.69 E-value=31 Score=37.90 Aligned_cols=40 Identities=30% Similarity=0.207 Sum_probs=31.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l 428 (917)
++|.|+|.|..+..++..|... ++.|++++++++..+...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChHHHHHHH
Confidence 3699999999998888888753 578899988776666543
No 98
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.23 E-value=14 Score=39.15 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=52.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
+.++|.|.+. .+..++++|.+. +..|++++++++..+...........+.++.++.+|.++++.+.++
T Consensus 3 k~vlItGas~giG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK------GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688998765 577788888753 4678888887766655443321111234678889999998876552
Q ss_pred -CcccccEEEEecC
Q 002475 457 -SVSKARAIIVLAS 469 (917)
Q Consensus 457 -gI~~A~aVIilt~ 469 (917)
.....+.+|..+.
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1234677776654
No 99
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.97 E-value=18 Score=38.75 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=53.5
Q ss_pred CeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C-
Q 002475 644 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 719 (917)
Q Consensus 644 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~- 719 (917)
++++|.|.+. .|..+++.|.+. |..+++++..+ +..+.+.+ .+.+..+.++++|.++++.++++ +
T Consensus 2 k~vlItGasg~iG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE---GWRVGAYDINE--AGLAALAA------ELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 5799999865 499999999764 78888887543 33333332 12233577889999998887653 1
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.++.
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 2356888887764
No 100
>PRK08265 short chain dehydrogenase; Provisional
Probab=71.75 E-value=14 Score=39.76 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...... +.++.++.+|.++++.++++=
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA------GARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 35788888754 588888888753 568888888877666554332 345778889999988876631
Q ss_pred ---cccccEEEEec
Q 002475 458 ---VSKARAIIVLA 468 (917)
Q Consensus 458 ---I~~A~aVIilt 468 (917)
....|.+|-.+
T Consensus 75 ~~~~g~id~lv~~a 88 (261)
T PRK08265 75 VARFGRVDILVNLA 88 (261)
T ss_pred HHHhCCCCEEEECC
Confidence 12346665554
No 101
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=71.42 E-value=16 Score=37.66 Aligned_cols=79 Identities=18% Similarity=0.061 Sum_probs=53.1
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
..+++|+|. |..+..+++.|... +..|+++.++.++.+...+.+... .+..+...+..+.+++.++ +.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~-~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAAA-IKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhh---cCCcEEEeeCCCHHHHHHH-Hhc
Confidence 468999996 88788888888642 457888888887766654432111 1234556677887776643 467
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
|+.||..+..
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988887755
No 102
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=71.35 E-value=37 Score=31.68 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=47.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
++.|+|.|..+...+..+..... ....+-++|.+++..+...+++ ++. -.++.+.|.... +.|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-------~~~----~~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-------GIP----VYTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-------TSE----EESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-------ccc----chhHHHHHHHhh--cCCE
Confidence 68899999988888888776421 2355668899998877665442 222 133455554433 7999
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
|++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999965
No 103
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.01 E-value=17 Score=44.30 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=56.1
Q ss_pred ccCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcc-cc------CCccEEEEEECCCCHHH
Q 002475 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-DF------MGTSVICRSGSPLILAD 452 (917)
Q Consensus 381 ~~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~-~~------~~~~V~~i~Gd~~d~e~ 452 (917)
..+.++|.|.+ ..|..++++|... |+.|+++.++.+..+.....+.. .. ...++.++.||.++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34578888874 5688888888753 57788888877766544332100 00 01357899999999999
Q ss_pred HhccCcccccEEEEecCC
Q 002475 453 LKKVSVSKARAIIVLASD 470 (917)
Q Consensus 453 L~rAgI~~A~aVIilt~d 470 (917)
++++ +..++.||.+...
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8763 5678888887654
No 104
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.91 E-value=9.1 Score=49.64 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCe-------------EEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEc
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSE-------------LWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG 707 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~-------------i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~G 707 (917)
+..++|+|+|-|+.|...++.|.+. ++.+ ++|.+. ..++.+.+++ .+++ +..+..
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~--~~~v~l 634 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIEN--AEAVQL 634 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH------hcCC--CceEEe
Confidence 4577999999999999999999753 2333 555554 3466666665 2334 345788
Q ss_pred CcCCHhHHhcCCCCCccEEEEecCC
Q 002475 708 NAVIRRHLESLPLETFDSILILADE 732 (917)
Q Consensus 708 D~t~~~~L~~a~Ie~adavIilsd~ 732 (917)
|.+|.+.|.++ +..+|+||+++..
T Consensus 635 Dv~D~e~L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 635 DVSDSESLLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred ecCCHHHHHHh-hcCCCEEEECCCc
Confidence 89999988876 5569999999864
No 105
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=70.71 E-value=26 Score=39.95 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=53.6
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCC-eEEEEccCChH-------------------HHHHHhhcCCCCccCcCCce
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK-------------------EREKKLTDGGLDISGLMNIK 701 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~i~II~~~p~~-------------------Er~~~l~~~gl~~~~l~~~~ 701 (917)
...+|+|+|-|..|..+++.|.+. |. .++++|.+..+ -+.+.+++. + ..--++++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~-l-~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH-L-RKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH-H-HHHCCCcE
Confidence 357899999999999999999865 54 79988864311 011111110 0 00125677
Q ss_pred EEEEEcCcCCHhHHhcCCCCCccEEEEecC
Q 002475 702 LVHREGNAVIRRHLESLPLETFDSILILAD 731 (917)
Q Consensus 702 v~~i~GD~t~~~~L~~a~Ie~adavIilsd 731 (917)
+..+.++.+. +.++++ ++++|.||..+|
T Consensus 98 i~~~~~~~~~-~~~~~~-~~~~DlVid~~D 125 (338)
T PRK12475 98 IVPVVTDVTV-EELEEL-VKEVDLIIDATD 125 (338)
T ss_pred EEEEeccCCH-HHHHHH-hcCCCEEEEcCC
Confidence 7778888764 345544 788998888875
No 106
>PRK08309 short chain dehydrogenase; Provisional
Probab=70.37 E-value=17 Score=37.32 Aligned_cols=65 Identities=18% Similarity=0.060 Sum_probs=44.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
++++|.|.+..+..+++.|... +..|++...+++..+....... ....+.++.+|..|++.++++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~------G~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK------GFHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 4789999877777888888753 5677788888776665433221 123567778888888777654
No 107
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=70.33 E-value=3.3 Score=47.31 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCC-HHHHHHHHHHhhhccCCC--CC-c-CCcc---Ceeeeehhhhhh-HHHHH
Q 002475 286 AKLLALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNH--AD-R-VGTG---PRIVSVSISSGG-MLIFA 355 (917)
Q Consensus 286 ~~ll~ll~~~l~lil~g~~~~~~~e~~s-~~dAly~~~~tvTTvGyg--d~-~-~t~~---gRi~~v~lil~G-i~i~a 355 (917)
.+.+..+++.+++++++++.+...+... +.|+++-++..+.|+|.+ .. + .+.. ++++.+++|+.| +.+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~ 344 (354)
T PF02386_consen 266 RKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILP 344 (354)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHH
Confidence 3344444555666666666666555433 699999999999999864 31 2 2344 677766666555 43443
No 108
>PRK08267 short chain dehydrogenase; Provisional
Probab=70.18 E-value=16 Score=39.15 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--Cc-
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--gI- 458 (917)
++++|.|.+. .+..++++|... +..|++++.+++..+...... .+.++.++.+|.++.+.++++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE------GWRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4689999876 477788888752 568888888887766554322 234688999999999988764 22
Q ss_pred ----ccccEEEEecCC
Q 002475 459 ----SKARAIIVLASD 470 (917)
Q Consensus 459 ----~~A~aVIilt~d 470 (917)
..-|.+|-++.-
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234777776643
No 109
>PRK06194 hypothetical protein; Provisional
Probab=69.97 E-value=15 Score=40.02 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=54.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc--
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI-- 458 (917)
.++++|.|.+. .+..++++|... +..|++++.+.+..+...++... .+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL------GMKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789998765 577888888752 56788888877665554443211 13457889999999998876421
Q ss_pred ----ccccEEEEecCC
Q 002475 459 ----SKARAIIVLASD 470 (917)
Q Consensus 459 ----~~A~aVIilt~d 470 (917)
...|.+|-++..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 235777777654
No 110
>PRK00536 speE spermidine synthase; Provisional
Probab=69.87 E-value=13 Score=40.87 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhc-CCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD-GGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~-~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
..+++|||+|+|+-| .++|+.++ + .++++++-+ ++-.+...+ .+---..+.+.++.++. .+.+..
T Consensus 71 ~~pk~VLIiGGGDGg--~~REvLkh--~-~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLE--LAHQLFKY--D-THVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLD 136 (262)
T ss_pred CCCCeEEEEcCCchH--HHHHHHCc--C-CeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhcc
Confidence 457999999999885 56777766 2 489999864 233333222 00000124455555554 244555
Q ss_pred CCCccEEEEe
Q 002475 720 LETFDSILIL 729 (917)
Q Consensus 720 Ie~adavIil 729 (917)
-+++|.||+-
T Consensus 137 ~~~fDVIIvD 146 (262)
T PRK00536 137 IKKYDLIICL 146 (262)
T ss_pred CCcCCEEEEc
Confidence 5789999985
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=69.51 E-value=16 Score=35.81 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=49.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|..+..+++.|...+ ...|.+.+.+++..+...+++.. . .+..+..+.+.+ +++|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFGE-----L--GIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHhh-----c--ccceeecchhhc----cccC
Confidence 568999999999999999987531 36788889988777665443210 0 011122333322 7899
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||.++..
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 112
>PLN02214 cinnamoyl-CoA reductase
Probab=69.41 E-value=22 Score=40.26 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
.++++|.|. |-.|..+++.|.+. |..|+.+...++......+.+.. .. ...+.++.||.++.+.+.++ +.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~----~~-~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER---GYTVKGTVRNPDDPKNTHLRELE----GG-KERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---cCEEEEEeCCchhhhHHHHHHhh----CC-CCcEEEEecCcCChHHHHHH-Hh
Confidence 457999999 67799999999764 77888776543211111111100 00 11366789999999888765 45
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999999864
No 113
>PRK01581 speE spermidine synthase; Validated
Probab=69.22 E-value=31 Score=39.74 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC-CC---CccCcCCceEEEEEcCcCCHhHHh
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GL---DISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~-gl---~~~~l~~~~v~~i~GD~t~~~~L~ 716 (917)
..+++|+++|.|..+ .++++.++ .+...|+++|-++ +..+...+. .+ ....+.+.++.++.||+.+ .|.
T Consensus 149 ~~PkrVLIIGgGdG~--tlrelLk~-~~v~~It~VEIDp--eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGGDGL--ALREVLKY-ETVLHVDLVDLDG--SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLS 221 (374)
T ss_pred CCCCEEEEECCCHHH--HHHHHHhc-CCCCeEEEEeCCH--HHHHHHHhccccchhccccCCCCceEEEECcHHH--HHH
Confidence 346799999987543 44555554 3346899999754 444433321 01 0112345567889999873 454
Q ss_pred cCCCCCccEEEEecC
Q 002475 717 SLPLETFDSILILAD 731 (917)
Q Consensus 717 ~a~Ie~adavIilsd 731 (917)
+. -+++|.|++-..
T Consensus 222 ~~-~~~YDVIIvDl~ 235 (374)
T PRK01581 222 SP-SSLYDVIIIDFP 235 (374)
T ss_pred hc-CCCccEEEEcCC
Confidence 43 368999998543
No 114
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=68.74 E-value=18 Score=38.57 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=52.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
+.++|.|.+. .+..++++|... +..|++++.+++.++...... +.++.++.+|.++.+.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ------GHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHH
Confidence 3688998765 577788888652 567888888887766543321 23577889999999887653
Q ss_pred -CcccccEEEEecC
Q 002475 457 -SVSKARAIIVLAS 469 (917)
Q Consensus 457 -gI~~A~aVIilt~ 469 (917)
.....+.+|..+.
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1135677776653
No 115
>PRK00536 speE spermidine synthase; Provisional
Probab=68.59 E-value=40 Score=37.05 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=59.6
Q ss_pred cccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH---hhccccCCccEEEEEECCCCHHHHhcc
Q 002475 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 380 ~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~---~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
..-.+|+|+|.|+ +..++|+.+.. ..|+++|-|++.++...+ .....+.+.++.++. .+++.
T Consensus 71 ~~pk~VLIiGGGD--Gg~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFD--LELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCc--hHHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhc
Confidence 3457999999998 44578877531 389999999977664322 112224556777664 14444
Q ss_pred CcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecC
Q 002475 457 SVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD 504 (917)
Q Consensus 457 gI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d 504 (917)
..++-|.||+.+.. +..... ..-|.++|+ .-++++..+
T Consensus 136 ~~~~fDVIIvDs~~------~~~fy~--~~~~~L~~~--Gi~v~Qs~s 173 (262)
T PRK00536 136 DIKKYDLIICLQEP------DIHKID--GLKRMLKED--GVFISVAKH 173 (262)
T ss_pred cCCcCCEEEEcCCC------ChHHHH--HHHHhcCCC--cEEEECCCC
Confidence 44678888887432 222221 234456663 346666543
No 116
>PRK10637 cysG siroheme synthase; Provisional
Probab=68.51 E-value=40 Score=39.99 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=55.5
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~ 459 (917)
...+++|+|.|+.+..=++.|... +..|+|+ ..-.+++..... ..++.++..+. .+++| +
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~-------~~~i~~~~~~~-~~~dl-----~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWAD-------AGMLTLVEGPF-DESLL-----D 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----C
Confidence 457999999999888777777754 3344444 332334444322 23566676655 34555 5
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 460 KARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 460 ~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
.|..||+.|+| .+.|-.+.-.++..+
T Consensus 72 ~~~lv~~at~d------~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 72 TCWLAIAATDD------DAVNQRVSEAAEARR 97 (457)
T ss_pred CCEEEEECCCC------HHHhHHHHHHHHHcC
Confidence 68889999976 567777777777643
No 117
>PRK07831 short chain dehydrogenase; Provisional
Probab=68.45 E-value=18 Score=38.83 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=43.7
Q ss_pred cCeEEEEec-c-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~-g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.+.++|.|. | ..+..+++.|... +..|++++.+++..+...+++...+...++.++.+|.++++.+++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 467889997 4 4789999998753 466888888776665544322111112346677788877766554
No 118
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.43 E-value=6.4 Score=38.45 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=49.3
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g-~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
..++++|+|-|..+..++..|.+. | .+++|++.. .+|.+.+.+ .+.+..+..+.- +.+. ..+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nRt--~~ra~~l~~------~~~~~~~~~~~~-----~~~~-~~~ 73 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNRT--PERAEALAE------EFGGVNIEAIPL-----EDLE-EAL 73 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEESS--HHHHHHHHH------HHTGCSEEEEEG-----GGHC-HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEECC--HHHHHHHHH------HcCccccceeeH-----HHHH-HHH
Confidence 468999999999999999999876 4 458998864 467777765 232222333332 2222 226
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
.++|.||..+.-
T Consensus 74 ~~~DivI~aT~~ 85 (135)
T PF01488_consen 74 QEADIVINATPS 85 (135)
T ss_dssp HTESEEEE-SST
T ss_pred hhCCeEEEecCC
Confidence 788988887753
No 119
>PRK07024 short chain dehydrogenase; Provisional
Probab=68.35 E-value=18 Score=38.71 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=52.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .|..++++|.+. +..|++++++++.+++..++.. ..+ ++.++.+|.++++.+.++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ------GATLGLVARRTDALQAFAARLP--KAA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcc--cCC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 35799998765 578888888752 5678888888777665544321 111 6788899999988876531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 123466665543
No 120
>PRK06101 short chain dehydrogenase; Provisional
Probab=68.30 E-value=16 Score=38.73 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=44.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
+.++|.|.+. .|..++++|.. .|..|++++++++..++.... ..++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~------~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK------QGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh------CCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 3588898765 47778888875 256788899887766554321 23577889999999987774
No 121
>PRK06949 short chain dehydrogenase; Provisional
Probab=68.18 E-value=21 Score=37.97 Aligned_cols=81 Identities=23% Similarity=0.165 Sum_probs=51.7
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-- 457 (917)
...+++|.|.+. .+..++++|... +..|+++..+++..+.....+. ..+.++.++.+|.+++++++++-
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQA------GAKVVLASRRVERLKELRAEIE--AEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 346888888754 688888888752 4678888888776665443221 11235778888998888776642
Q ss_pred ----cccccEEEEecC
Q 002475 458 ----VSKARAIIVLAS 469 (917)
Q Consensus 458 ----I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 123455555553
No 122
>PLN02780 ketoreductase/ oxidoreductase
Probab=68.18 E-value=43 Score=37.59 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=38.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCC
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~ 448 (917)
...++|.|.+. .|..++++|... |..|++++++++.+++..++....+.+.++.++..|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~------G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARK------GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 45788889876 577888888753 56788899988877765443211111224455555554
No 123
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.14 E-value=25 Score=37.32 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=53.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
.+++|.|.+. .+..++++|... +..|++..++++..+...+.. ...+.++.++.+|.++++.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK------GHNVIAGVQIAPQVTALRAEA--ARRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH--HhcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4789999765 577788888753 567777777665544332211 1113358889999999999988744478
Q ss_pred cEEEEecC
Q 002475 462 RAIIVLAS 469 (917)
Q Consensus 462 ~aVIilt~ 469 (917)
+.+|-.+.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88887764
No 124
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=68.05 E-value=14 Score=44.79 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=56.1
Q ss_pred CCCCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhc----CCCCc-cCcCCceEEEEEcCcCCHhH
Q 002475 641 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD----GGLDI-SGLMNIKLVHREGNAVIRRH 714 (917)
Q Consensus 641 ~~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~----~gl~~-~~l~~~~v~~i~GD~t~~~~ 714 (917)
+..+.++|.|. |..|..+++.|.+. |..|+++.... ++.+.+.+ ..++. ......++.++.||.++.+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~---G~~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL---GFRVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC---CCeEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 45678999998 67799999999764 78888876543 33332221 11000 00011236789999999998
Q ss_pred HhcCCCCCccEEEEecCC
Q 002475 715 LESLPLETFDSILILADE 732 (917)
Q Consensus 715 L~~a~Ie~adavIilsd~ 732 (917)
++++ +..+|.||..++.
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8764 5678988887653
No 125
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.91 E-value=19 Score=37.65 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=52.4
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
...++|.|.+ ..+..++++|... +..|+++.++++..+...+.+.. ..++.++.+|..+.+.++++=
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE------GYKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC------CCEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678899864 4688888888742 45788888887665554433211 135788999999988876531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|..+.
T Consensus 77 ~~~~~~~d~vi~~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIANAG 91 (237)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677776654
No 126
>PRK06138 short chain dehydrogenase; Provisional
Probab=67.64 E-value=20 Score=37.94 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=54.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.++++|.|.+. .+..++++|.+. +..|+++.++.+..+....... .+..+.++.+|.++++.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE------GARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 35789998865 577888888752 5678888887766554443321 134578899999999888764
Q ss_pred --CcccccEEEEecCC
Q 002475 457 --SVSKARAIIVLASD 470 (917)
Q Consensus 457 --gI~~A~aVIilt~d 470 (917)
.....+.+|-++..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 11356777776653
No 127
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.53 E-value=17 Score=39.67 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=42.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
+..+||.|.+..+..++++|. . +..|++++++++..+...+++. -.+.++.++.+|.++++.+++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLR--EAGFDVSTQEVDVSSRESVKA 66 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEeecCCHHHHHH
Confidence 457888898877888888883 2 5678888887766554433221 012346667777777766554
No 128
>PRK07063 short chain dehydrogenase; Provisional
Probab=67.47 E-value=20 Score=38.29 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..++++|.+. +..|++++.+++..+...+++.....+.++.++.+|.++++.++++=
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFARE------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4688888765 577888888753 56788888887766655443211011345778888888888776541
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 124566666554
No 129
>PRK05854 short chain dehydrogenase; Provisional
Probab=67.11 E-value=19 Score=40.13 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=44.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
..++||.|.+. .|..++++|... +..|+++.++.+..+...+++.....+..+.++..|..+.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 45788888876 578888888753 5678888888766665544331111123466777777777766553
No 130
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=66.87 E-value=18 Score=35.54 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=54.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--C
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d--~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--g 457 (917)
++++|.|.+. .+..++++|... ++..|+++.++ .+..+....++. -.+.++.++..|.++.+.++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-----g~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-----GARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-----TTEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CceEEEEeeeccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3789999776 578888888764 24677777776 445555444332 1346789999999999887764 1
Q ss_pred ----cccccEEEEecCC
Q 002475 458 ----VSKARAIIVLASD 470 (917)
Q Consensus 458 ----I~~A~aVIilt~d 470 (917)
-..-+.+|-.+.-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 2245666666654
No 131
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=66.83 E-value=24 Score=39.92 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=55.3
Q ss_pred cccCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 380 IEKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 380 ~~~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
...++|+|.|.+ -.|..++++|... +..|+++..+++..+....... .+.++.++.+|..+.+.+.++ +
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-H
Confidence 346689999965 4688899998753 4677776666544333322211 124588899999999988776 4
Q ss_pred ccccEEEEecCC
Q 002475 459 SKARAIIVLASD 470 (917)
Q Consensus 459 ~~A~aVIilt~d 470 (917)
+..+.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 467888888765
No 132
>PLN02427 UDP-apiose/xylose synthase
Probab=66.82 E-value=17 Score=41.64 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=53.7
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.++|+|.|. |-.|..++++|... +++.|+.++.+.+..+..... .......++.++.||..+.+.+.++ +..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~-----~g~~V~~l~r~~~~~~~l~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~-~~~ 86 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTE-----TPHKVLALDVYNDKIKHLLEP-DTVPWSGRIQFHRINIKHDSRLEGL-IKM 86 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhc-----CCCEEEEEecCchhhhhhhcc-ccccCCCCeEEEEcCCCChHHHHHH-hhc
Confidence 457999997 45688899999753 136777777665444332211 0000123688999999999998875 456
Q ss_pred ccEEEEecC
Q 002475 461 ARAIIVLAS 469 (917)
Q Consensus 461 A~aVIilt~ 469 (917)
++.||=++.
T Consensus 87 ~d~ViHlAa 95 (386)
T PLN02427 87 ADLTINLAA 95 (386)
T ss_pred CCEEEEccc
Confidence 888887774
No 133
>PRK10750 potassium transporter; Provisional
Probab=66.79 E-value=38 Score=40.51 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCC--C----c-CCccCeeeeehhhhhh-HHHHHHHHH
Q 002475 289 LALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--D----R-VGTGPRIVSVSISSGG-MLIFAMMLG 359 (917)
Q Consensus 289 l~ll~~~l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd--~----~-~t~~gRi~~v~lil~G-i~i~a~~ig 359 (917)
+..+++.+++++++++++ ..++.++.+|+--+..+++++|.+- . + -+..++++.++.|+.| +-++++++.
T Consensus 398 ~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 398 WGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555 5678899999999999999888643 2 2 3456888877777666 555554443
No 134
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.34 E-value=21 Score=37.71 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=53.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..++++|.+. +..|++++++++..+........ +.++.++.+|.++++.++++-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788888754 578889998753 56788888887766554433211 245788999999999887641
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 77 ~~~~~~d~vi~~ag 90 (251)
T PRK07231 77 ERFGSVDILVNNAG 90 (251)
T ss_pred HHhCCCCEEEECCC
Confidence 234677777664
No 135
>PRK07454 short chain dehydrogenase; Provisional
Probab=66.33 E-value=22 Score=37.46 Aligned_cols=79 Identities=20% Similarity=0.077 Sum_probs=51.4
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+ ..+..++++|.+. +..|++++++++..+...+... ..+.++.++.+|.++++.+.++=
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA------GWDLALVARSQDALEALAAELR--STGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467888864 4678888988753 4678888888766555433221 11245778899999998876541
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124577766554
No 136
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=66.00 E-value=16 Score=38.77 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|+|..+..=++.|.+. |..++++.....+|......++ ++.++. +.-+.+.|..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~---ga~v~Vvs~~~~~el~~~~~~~----------~i~~~~-~~~~~~~~~~---- 72 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA---GADVTVVSPEFEPELKALIEEG----------KIKWIE-REFDAEDLDD---- 72 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc---CCEEEEEcCCccHHHHHHHHhc----------Ccchhh-cccChhhhcC----
Confidence 356999999999999888888754 8899999876533433333221 133344 4444444443
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
++.|++.+++
T Consensus 73 -~~lviaAt~d 82 (210)
T COG1648 73 -AFLVIAATDD 82 (210)
T ss_pred -ceEEEEeCCC
Confidence 8888888765
No 137
>PRK07062 short chain dehydrogenase; Provisional
Probab=65.88 E-value=23 Score=38.02 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=44.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.+.++|.|.+. .+..++++|... +..|+++.++++..+...++......+.++.++.+|.++++.+++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAA 76 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHH
Confidence 35788888765 578888888753 567888888876655543322111112356777888888877655
No 138
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.81 E-value=46 Score=41.47 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhhhcC-----------------CCHHHHHHHHHHhh--hccCCCCCc---CC---ccCee-eeehhhh
Q 002475 295 TIFLIIFGGLALYAVSD-----------------SSFAEALWLSWTFV--ADSGNHADR---VG---TGPRI-VSVSISS 348 (917)
Q Consensus 295 ~l~lil~g~~~~~~~e~-----------------~s~~dAly~~~~tv--TTvGygd~~---~t---~~gRi-~~v~lil 348 (917)
+++++.++..+|..+++ .+..|+|...+.++ .|+||||.+ .+ ..+++ |.+++++
T Consensus 551 ~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~il 630 (782)
T KOG3676|consen 551 LVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMIL 630 (782)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHH
Confidence 45555666666666531 25678777666666 679999964 22 23444 3456667
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 002475 349 GGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 349 ~Gi~i~a~~ig~i~~~i~~~ 368 (917)
+-++++-++|+.+.+....-
T Consensus 631 v~ILllNMLIAMMg~Ty~~V 650 (782)
T KOG3676|consen 631 VTILLLNMLIAMMGNTYETV 650 (782)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 77777788888877655443
No 139
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=65.79 E-value=18 Score=40.78 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=48.8
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCC-CHHHHhccCccc
Q 002475 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (917)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~-d~e~L~rAgI~~ 460 (917)
++|+|.|. |-.|..++++|... +++.|+.++...+...... ...++.++.||.. +.+.+.++ ++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~-----~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET-----TDWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC-----CCCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 36999997 66788899998753 1467777776554333221 1235888999997 66666654 457
Q ss_pred ccEEEEec
Q 002475 461 ARAIIVLA 468 (917)
Q Consensus 461 A~aVIilt 468 (917)
++.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 88888543
No 140
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=65.47 E-value=14 Score=40.29 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=50.5
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC-
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET- 722 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~- 722 (917)
+|+|.|. |-.|..++++|.+. .++.+|++++......+.+.+.+. ..+..+.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADL------EDNPRYRFVKGDIGDRELVSRL-FTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhh------ccCCCcEEEEcCCcCHHHHHHH-Hhhc
Confidence 5899998 56799999999764 123677777632111111111110 0112356789999999988775 343
Q ss_pred -ccEEEEecCC
Q 002475 723 -FDSILILADE 732 (917)
Q Consensus 723 -adavIilsd~ 732 (917)
+|.||-++..
T Consensus 73 ~~d~vi~~a~~ 83 (317)
T TIGR01181 73 QPDAVVHFAAE 83 (317)
T ss_pred CCCEEEEcccc
Confidence 8999988853
No 141
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.31 E-value=21 Score=37.50 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=52.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .+..++++|.+. +..|++++++++..+....+.. ..+.++.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~------G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE------GVNVGLLARTEENLKAVAEEVE--AYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--HhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46789998775 477788888652 5688888887765554433221 12346778899999988876541
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|..+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 125677776654
No 142
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=65.18 E-value=18 Score=39.42 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=49.4
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC-----c
Q 002475 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (917)
Q Consensus 385 III~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-----I 458 (917)
|+|.|. |..|..++++|.+. ++.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 678887 67789999999753 467777777765321 124566789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 002475 459 SK-ARAIIVLASD 470 (917)
Q Consensus 459 ~~-A~aVIilt~d 470 (917)
.. ++.++.++..
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888877754
No 143
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.74 E-value=22 Score=38.19 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=45.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..+++.|.+. +..|++++++++..+...++. +.++.++.+|.++++.++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE------GARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRA 70 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHH
Confidence 35788888875 577788888753 567888888877766554332 23467788888888776653
No 144
>PLN02650 dihydroflavonol-4-reductase
Probab=64.74 E-value=24 Score=39.75 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=51.7
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
+.+|+|.|.. -.|..++++|... ++.|++...+++..+.........-...++.++.||..+.+.+.++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER------GYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC------CCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 4689999975 4688899999753 4566665555433332211100000012578899999999888764 456
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
++.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8888888754
No 145
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=64.63 E-value=29 Score=38.88 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=52.6
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
.+++|.|.. -.|..++++|.... .++.|++.+.+....+...... ...++.++.||.+|.+.+.++ ++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 468888874 46888999987531 1356777776654333222211 123588899999999999875 4568
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 888887653
No 146
>PLN02366 spermidine synthase
Probab=64.57 E-value=58 Score=36.65 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=52.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc---cccCCccEEEEEECCCCHHHHhccC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~---~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
...+|+++|.|. +.+++++.+. .....|+++|.|++.++...+.+. ..+.+.++.++.||+... |++..
T Consensus 91 ~pkrVLiIGgG~--G~~~rellk~----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~--l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGD--GGVLREIARH----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF--LKNAP 162 (308)
T ss_pred CCCeEEEEcCCc--cHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH--Hhhcc
Confidence 357899999996 4466777643 123578899999876664432211 113456799999997643 33332
Q ss_pred cccccEEEEecCC
Q 002475 458 VSKARAIIVLASD 470 (917)
Q Consensus 458 I~~A~aVIilt~d 470 (917)
-++-|.||+...+
T Consensus 163 ~~~yDvIi~D~~d 175 (308)
T PLN02366 163 EGTYDAIIVDSSD 175 (308)
T ss_pred CCCCCEEEEcCCC
Confidence 2468999886654
No 147
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=64.29 E-value=18 Score=40.50 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=47.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccc--cCCccEEEEEECCCCHHHHhccCcccc
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~--~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
+|.|+|.|..+..++..|.... -.+.++++|.+++..+....++... +....+.+. + .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g----~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG----IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----hCCC
Confidence 7999999999999888886531 1257899998877665544433110 111222222 2 33333 4789
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||++++.
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999999976
No 148
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=63.84 E-value=23 Score=39.38 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=51.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...++|.|.+. .|..++++|... ++.|+++..+++..+.........-...++.++.||.++.+.++++ ++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~ 77 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDG 77 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcC
Confidence 35789998754 588889998753 4566665555433222111000000113578899999999988775 456
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
.+.||-++..
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 7888888764
No 149
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.77 E-value=25 Score=37.46 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=44.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
...++|.|.+. .+..+++.|.+. +..|++++.+.+..+...++. +..+.++.+|.++++.++++
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE------GARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRI 70 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHH
Confidence 34688888754 578888888753 578889998887666544332 23467788888888877654
No 150
>PRK05993 short chain dehydrogenase; Provisional
Probab=63.74 E-value=20 Score=38.93 Aligned_cols=61 Identities=20% Similarity=0.087 Sum_probs=43.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
...++|.|.+. .|..++++|.+. +..|++++++++.++.... .++.++.+|.++.+.++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~------G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~ 65 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD------GWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAAL 65 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHH
Confidence 34789999854 577788888652 5788888888776654422 2467788999998876654
No 151
>PRK12829 short chain dehydrogenase; Provisional
Probab=63.62 E-value=24 Score=37.56 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=53.6
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-- 457 (917)
..++++|.|.+. .+..++++|.+. ++.|+++.++++..+...+.. .+.++.++.+|.++++.+.++=
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA------GARVHVCDVSEAALAATAARL----PGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH----hcCceEEEEccCCCHHHHHHHHHH
Confidence 356899998765 577788888752 567888888876655443322 1225678899999999876531
Q ss_pred ----cccccEEEEecC
Q 002475 458 ----VSKARAIIVLAS 469 (917)
Q Consensus 458 ----I~~A~aVIilt~ 469 (917)
....+.||-.+.
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 235788877664
No 152
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=63.31 E-value=23 Score=37.96 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=50.3
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCC-HhHHhcCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI-RRHLESLPL 720 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~-~~~L~~a~I 720 (917)
.++++|+|. |..|..+++.|.+. |.+|+.+...+ ++...+.. .+..+.++.||.++ .+.|.++-.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~~R~~--~~~~~~~~--------~~~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK---GFAVKAGVRDV--DKAKTSLP--------QDPSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC---CCEEEEEecCH--HHHHHhcc--------cCCceEEEEeeCCCCHHHHHHHhh
Confidence 468999997 77899999999753 77787766433 22222211 11236678999998 455544321
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
..+|.|+..+..
T Consensus 84 ~~~d~vi~~~g~ 95 (251)
T PLN00141 84 DDSDAVICATGF 95 (251)
T ss_pred cCCCEEEECCCC
Confidence 478999987653
No 153
>PRK06482 short chain dehydrogenase; Provisional
Probab=63.19 E-value=25 Score=37.99 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=53.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
++++|.|.+. .+..++++|.+. +..|+++..+++.++...... +.++.++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR------GDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHH
Confidence 5789999764 578888888753 567888888877666543321 23578899999999887764
Q ss_pred -CcccccEEEEecCC
Q 002475 457 -SVSKARAIIVLASD 470 (917)
Q Consensus 457 -gI~~A~aVIilt~d 470 (917)
.....+.+|-++..
T Consensus 72 ~~~~~id~vi~~ag~ 86 (276)
T PRK06482 72 AALGRIDVVVSNAGY 86 (276)
T ss_pred HHcCCCCEEEECCCC
Confidence 12346777777654
No 154
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=63.02 E-value=24 Score=37.78 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
++++|.|.+. .+..++++|... +..|++++++++..+...+++.. ..++.++.+|.++++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK------GARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHH
Confidence 3789999876 577788888753 56788888887766655443211 1246677888888777654
No 155
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=62.89 E-value=64 Score=36.17 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=34.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHh
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~ 430 (917)
..-.||.|.++ .|...++||.+ +|-.|+|+.+++++++....+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAk------rG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAK------RGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHH
Confidence 46788899988 48889999985 367899999999988876543
No 156
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=62.85 E-value=84 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=26.7
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
+.+|+|+|.|..+..+++.|.... -..++++|.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-----v~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-----VGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-----TSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-----CCceeecCCcc
Confidence 468999999999999999998753 24566776653
No 157
>PRK10637 cysG siroheme synthase; Provisional
Probab=62.74 E-value=25 Score=41.78 Aligned_cols=72 Identities=18% Similarity=0.053 Sum_probs=47.8
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|+|+.+..=++.|.++ |..|+||...-.+|..+. .+.| .+.++..++.. ++ ++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~---ga~v~visp~~~~~~~~l-~~~~---------~i~~~~~~~~~-~d-----l~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA---GARLTVNALAFIPQFTAW-ADAG---------MLTLVEGPFDE-SL-----LD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHHH-HhCC---------CEEEEeCCCCh-HH-----hC
Confidence 468999999999988877777664 778999986544444332 2211 25566766543 33 45
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.++.|++.+++
T Consensus 72 ~~~lv~~at~d 82 (457)
T PRK10637 72 TCWLAIAATDD 82 (457)
T ss_pred CCEEEEECCCC
Confidence 67777777654
No 158
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.70 E-value=27 Score=37.04 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=45.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
...++|.|.+. .+..++++|.+. +..|++++++++..+...+.+. . .+.++.++.+|.++.+.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE------GAKVVVADRDAAGGEETVALIR-E-AGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-h-cCCceEEEEcCCCCHHHHHHH
Confidence 35788888765 588888998753 4678888888766555443221 1 133577888888888877653
No 159
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=62.66 E-value=16 Score=37.70 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=49.7
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
.++++|+|+ |..|..+++.|.+. |..+++++.. .++.+.+.+. + ....+. .+...|..+.+.+.++ +.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~---g~~V~l~~R~--~~~~~~l~~~-l--~~~~~~--~~~~~~~~~~~~~~~~-~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE---GARVVLVGRD--LERAQKAADS-L--RARFGE--GVGAVETSDDAARAAA-IK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHHH-H--HhhcCC--cEEEeeCCCHHHHHHH-Hh
Confidence 468999998 88899999999754 6788888754 3555554331 0 000122 2345677777666543 46
Q ss_pred CccEEEEecC
Q 002475 722 TFDSILILAD 731 (917)
Q Consensus 722 ~adavIilsd 731 (917)
++|.||..+.
T Consensus 97 ~~diVi~at~ 106 (194)
T cd01078 97 GADVVFAAGA 106 (194)
T ss_pred cCCEEEECCC
Confidence 7887776654
No 160
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=62.38 E-value=69 Score=33.76 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+ ..|..++++|.+. |..+++++..+.++..+.+.+ + +..+.++.+|.++++.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~---G~~vi~~~r~~~~~~~~~~~~-------~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA---GADIVGAGRSEPSETQQQVEA-------L-GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCchHHHHHHHHHh-------c-CCceEEEECCCCCHHHHHHHHHH
Confidence 4689999985 5699999999864 788888875432222233322 1 12367789999999877531
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 74 ~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23467888887754
No 161
>PRK08017 oxidoreductase; Provisional
Probab=62.07 E-value=23 Score=37.57 Aligned_cols=59 Identities=15% Similarity=-0.000 Sum_probs=41.2
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
+.++|.|. |..|..++++|... +..|+++.++++..+...+ .++.++.+|..+.+.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR------GYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 66788999999753 4678888887766554321 235667788887776554
No 162
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=62.07 E-value=18 Score=39.80 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=51.1
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 723 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~a 723 (917)
+++|.|. |-.|..+++.|.+. |.+|++++..+.. .. .+....+.++.||.++.+.+.++ ++.+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~---g~~V~~~~r~~~~--~~----------~~~~~~~~~~~~D~~~~~~l~~~-~~~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQ---GEEVRVLVRPTSD--RR----------NLEGLDVEIVEGDLRDPASLRKA-VAGC 65 (328)
T ss_pred eEEEECCccchhHHHHHHHHHC---CCEEEEEEecCcc--cc----------ccccCCceEEEeeCCCHHHHHHH-HhCC
Confidence 5899997 67799999999764 7788888864321 11 11223467789999999888775 4567
Q ss_pred cEEEEecC
Q 002475 724 DSILILAD 731 (917)
Q Consensus 724 davIilsd 731 (917)
|.|+-++.
T Consensus 66 d~vi~~a~ 73 (328)
T TIGR03466 66 RALFHVAA 73 (328)
T ss_pred CEEEEece
Confidence 88887764
No 163
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.00 E-value=3.6 Score=40.12 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhccCCCCCcCCccCeeeeehhhhhhHHHHHHHHHHHHHHHHHH
Q 002475 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (917)
Q Consensus 314 ~~dAly~~~~tvTTvGygd~~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~~ 368 (917)
+.+++|+++.++..-|.-..+.+..+|++.+++.++++++.+...+.++..+...
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5677777765555433333356788999999999999988888888877766553
No 164
>PRK07074 short chain dehydrogenase; Provisional
Probab=61.89 E-value=39 Score=35.94 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=53.1
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
+.++|.|. |..|..+++.|.+. |..++++...+ +..+.+.+ .+.+..+.++++|.++.+.+.++-
T Consensus 3 k~ilItGat~~iG~~la~~L~~~---g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA---GDRVLALDIDA--AALAAFAD------ALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 46899998 46699999999764 77888887543 33333332 122334678899999999875422
Q ss_pred ---CCCccEEEEecCC
Q 002475 720 ---LETFDSILILADE 732 (917)
Q Consensus 720 ---Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 72 ~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 72 AAERGPVDVLVANAGA 87 (257)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357988888764
No 165
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.58 E-value=92 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.2
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d 420 (917)
.+.+|+|+|.|..+..+++.|.... -..++++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-----v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-----VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-----CCeEEEecCC
Confidence 4679999999999999999998653 2467778876
No 166
>PRK08643 acetoin reductase; Validated
Probab=61.52 E-value=28 Score=37.03 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=49.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..+++.|.+. +..|++++++++..+....+.. ..+.++.++.+|.++++.++++=
T Consensus 3 k~~lItGas~giG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED------GFKVAIVDYNEETAQAAADKLS--KDGGKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788888776 477788888752 5678888887766555443321 01345777888888887765521
Q ss_pred --cccccEEEEec
Q 002475 458 --VSKARAIIVLA 468 (917)
Q Consensus 458 --I~~A~aVIilt 468 (917)
..+.+.+|-++
T Consensus 75 ~~~~~id~vi~~a 87 (256)
T PRK08643 75 DTFGDLNVVVNNA 87 (256)
T ss_pred HHcCCCCEEEECC
Confidence 12456666555
No 167
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.43 E-value=28 Score=36.84 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=53.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
++++|.|.+. .+..++++|... +..|++++++++..+....+.. ..+.++.++.+|.++++.++++-
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE------GAKVVIADLNDEAAAAAAEALQ--KAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5799998654 688899999753 5678888887766555433221 12345778899999999876641
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|-++.
T Consensus 77 ~~~~~~d~vi~~a~ 90 (258)
T PRK12429 77 ETFGGVDILVNNAG 90 (258)
T ss_pred HHcCCCCEEEECCC
Confidence 124677776664
No 168
>PRK07102 short chain dehydrogenase; Provisional
Probab=61.27 E-value=27 Score=36.83 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=51.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--c-
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I- 458 (917)
++++|.|.+. .+..++++|.+. +..|++++.+++..+...++... ..+.++.++.+|.++++.++++- +
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA------GARLYLAARDVERLERLADDLRA-RGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHH-hcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3788998655 578888888753 56788888887665554432211 11346888999999998876641 1
Q ss_pred ccccEEEEec
Q 002475 459 SKARAIIVLA 468 (917)
Q Consensus 459 ~~A~aVIilt 468 (917)
.+.+.+|..+
T Consensus 75 ~~~d~vv~~a 84 (243)
T PRK07102 75 ALPDIVLIAV 84 (243)
T ss_pred hcCCEEEECC
Confidence 2346777554
No 169
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.23 E-value=29 Score=36.34 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=52.2
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc-
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI- 458 (917)
.++++|.|.+ ..+..+++.|... +..|+++ ..+++..+...+.... .+.++.++.+|.++++.+.++--
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE------GAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 3578999875 4578888888642 4667777 8776665544432211 23457889999999998766411
Q ss_pred -----ccccEEEEecCC
Q 002475 459 -----SKARAIIVLASD 470 (917)
Q Consensus 459 -----~~A~aVIilt~d 470 (917)
...+.+|.....
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 146777766543
No 170
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.22 E-value=33 Score=36.09 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=53.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .+..++++|.+. ++.|++++.+++..+...+++. -.+.++.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA------GATVAFNDGLAAEARELAAALE--AAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46888988754 678888888753 5677778877766555443321 11235788899999998876541
Q ss_pred ---cccccEEEEecCC
Q 002475 458 ---VSKARAIIVLASD 470 (917)
Q Consensus 458 ---I~~A~aVIilt~d 470 (917)
....+.+|-++.-
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1356777776643
No 171
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.18 E-value=31 Score=36.76 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=51.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .+..++++|.+. +..|++.+++++..+.....+. -.+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDPAKLAAAAESLK--GQGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCceEEEEEccCCCHHHHHHHHHHH
Confidence 46788888754 578888888753 5678888888766555443321 01235778889999988877641
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 82 ~~~~~~~d~li~~ag 96 (255)
T PRK07523 82 EAEIGPIDILVNNAG 96 (255)
T ss_pred HHhcCCCCEEEECCC
Confidence 123456666554
No 172
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=61.18 E-value=24 Score=39.01 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=50.2
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 383 ~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..|+|.|. |-.|..++++|... ++.|+++..+.+............-...++.++.||..+++.+.++ ++.+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 57999996 55688899999753 4566665544332111100000000123678899999998887765 4568
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 899888754
No 173
>PRK06500 short chain dehydrogenase; Provisional
Probab=60.91 E-value=33 Score=36.15 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=49.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.++++|.|.+. .+..++++|... +..|++++.+++..+...++. +.++.++.+|.++.+.+.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE------GARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 35789999765 577888888753 567888888776665544332 23566788888887765442
Q ss_pred --CcccccEEEEecC
Q 002475 457 --SVSKARAIIVLAS 469 (917)
Q Consensus 457 --gI~~A~aVIilt~ 469 (917)
.....+.+|-++.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1124566665553
No 174
>PRK08219 short chain dehydrogenase; Provisional
Probab=60.71 E-value=27 Score=36.14 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=50.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--cc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I~ 459 (917)
++++|.|.+. .+..++++|.+. +.|++++++++..+..... ..++.++.+|.++++.++++- +.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 4789988765 577788888642 4577777776655443221 124778999999999987742 23
Q ss_pred cccEEEEecCC
Q 002475 460 KARAIIVLASD 470 (917)
Q Consensus 460 ~A~aVIilt~d 470 (917)
..+.+|-+...
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 57888777654
No 175
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=60.38 E-value=25 Score=38.98 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=53.7
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccC----CccEEEEEECCCCHHHHhccCc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFM----GTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~----~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
.||+|+|.|+ +..++++.... .-..++++|-|++.++...+-+ .... ..++..+.+|+.. -+++..-
T Consensus 78 k~VLiiGgGd--G~tlRevlkh~----~ve~i~~VEID~~Vi~~ar~~l-~~~~~~~~dpRv~i~i~Dg~~--~v~~~~~ 148 (282)
T COG0421 78 KRVLIIGGGD--GGTLREVLKHL----PVERITMVEIDPAVIELARKYL-PEPSGGADDPRVEIIIDDGVE--FLRDCEE 148 (282)
T ss_pred CeEEEECCCc--cHHHHHHHhcC----CcceEEEEEcCHHHHHHHHHhc-cCcccccCCCceEEEeccHHH--HHHhCCC
Confidence 4999999997 45677776543 2468899999998777543322 1111 4678888888754 3444433
Q ss_pred ccccEEEEecCC
Q 002475 459 SKARAIIVLASD 470 (917)
Q Consensus 459 ~~A~aVIilt~d 470 (917)
+.|.||+.+.|
T Consensus 149 -~fDvIi~D~td 159 (282)
T COG0421 149 -KFDVIIVDSTD 159 (282)
T ss_pred -cCCEEEEcCCC
Confidence 89999998876
No 176
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.36 E-value=16 Score=42.81 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
.++++|+|.|+.|..+++.|.+. |..|++++..+.+...+.+.+ +....+.++.+|..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEKEEDQLKEALEE-------LGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchHHHHHHHHH-------HHhcCCEEEeCCcchh------Hhhc
Confidence 57899999999999999999865 888999987542222111111 1111234567776652 2456
Q ss_pred ccEEEEecCC
Q 002475 723 FDSILILADE 732 (917)
Q Consensus 723 adavIilsd~ 732 (917)
+|.||..++.
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 7888876653
No 177
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=60.31 E-value=17 Score=35.80 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=54.4
Q ss_pred CeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
|+++|.|.+. .|..+++.|.+. .+..++++...++.++.+.+.+. + +-++.++.+++.|.++++.++++-
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~-l---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQE-L---KAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHH-H---HHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeeccccccccccccc-c---ccccccccccccccccccccccccccc
Confidence 5789999865 499999999875 13456666654234455544220 0 012456888999999998776532
Q ss_pred ---CCCccEEEEecCCC
Q 002475 720 ---LETFDSILILADES 733 (917)
Q Consensus 720 ---Ie~adavIilsd~~ 733 (917)
-...|.+|-.++-.
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 34778888777643
No 178
>PRK06924 short chain dehydrogenase; Provisional
Probab=60.29 E-value=27 Score=36.96 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
++++|.|.+. .+..++++|.+. +..|+++.+++ +.++...+. .+.++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK------GTHVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc------CCEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 4789998754 588888998753 45677777655 344433221 134577888899888887653
No 179
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=60.22 E-value=30 Score=37.12 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=52.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .+..++++|.+. +..|++.+.+++..+.....+. -.+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~------G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA------GATIVFNDINQELVDKGLAAYR--ELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788888876 477788888753 4677788887766665543321 11335778889999988876642
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
...-|.+|..+.
T Consensus 82 ~~~~~~id~li~~ag 96 (265)
T PRK07097 82 EKEVGVIDILVNNAG 96 (265)
T ss_pred HHhCCCCCEEEECCC
Confidence 123566665554
No 180
>PRK06182 short chain dehydrogenase; Validated
Probab=60.19 E-value=26 Score=37.86 Aligned_cols=75 Identities=23% Similarity=0.088 Sum_probs=52.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .|..++++|... ++.|+++.++++.++.... .++.++.+|.++++.++++-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 35789999754 578888888752 5788888888776654321 24778899999998876641
Q ss_pred ---cccccEEEEecCC
Q 002475 458 ---VSKARAIIVLASD 470 (917)
Q Consensus 458 ---I~~A~aVIilt~d 470 (917)
....|.+|-.+.-
T Consensus 69 ~~~~~~id~li~~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHhcCCCCEEEECCCc
Confidence 1256777776643
No 181
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.17 E-value=30 Score=36.75 Aligned_cols=67 Identities=18% Similarity=0.115 Sum_probs=45.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...+++. ..+.++.++.+|.++++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~ 78 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA------GAHVLVNGRNAATLEAAVAALR--AAGGAAEALAFDIADEEAVAAA 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHH
Confidence 45778888765 477788888742 5688888888766555443321 1233577889999998887653
No 182
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=60.08 E-value=38 Score=39.06 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=49.3
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
...++|+|.|..+...++.+... +..|+++|.++++.+.....+ +.. +..+..+.+.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 45699999999888888877643 457888998887766543321 111 22344566777665 6789
Q ss_pred cEEEEec
Q 002475 462 RAIIVLA 468 (917)
Q Consensus 462 ~aVIilt 468 (917)
|.||..+
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 183
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=60.03 E-value=32 Score=36.65 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=43.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
+-++|.|.+. .+..+++.|.+. +..|++++.+++..+...++.........+.++.+|.++++.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHH
Confidence 4588888775 477888888753 5678888887665554433221111113477788888887776654
No 184
>PRK06924 short chain dehydrogenase; Provisional
Probab=59.60 E-value=25 Score=37.27 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=43.1
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 717 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~ 717 (917)
++++|.|. |..|..++++|.+. |..|+++...+. +....+.+ . .+.++.++.+|.++++.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~---g~~V~~~~r~~~-~~~~~~~~------~-~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK---GTHVISISRTEN-KELTKLAE------Q-YNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc---CCEEEEEeCCch-HHHHHHHh------c-cCCceEEEEecCCCHHHHHH
Confidence 47999997 45699999999864 778888876542 23333322 1 12346778999999988754
No 185
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=59.57 E-value=28 Score=34.33 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=43.5
Q ss_pred EEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002475 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 725 (917)
Q Consensus 646 ilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ada 725 (917)
++|+|.|..+..+++..... |.++++++++++ ++++..- +...+ ..+.++...+...+.
T Consensus 1 L~I~GaG~va~al~~la~~l---g~~v~v~d~r~e---------------~~~~~~~-~~~~~--~~~~~~~~~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL---GFRVTVVDPRPE---------------RFPEADE-VICIP--PDDILEDLEIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC---TEEEEEEES-CC---------------C-TTSSE-EECSH--HHHHHHHC-S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhC---CCEEEEEcCCcc---------------ccCCCCc-cEecC--hHHHHhccCCCCCeE
Confidence 57999999999999988764 899999997532 2233221 22222 244456677777777
Q ss_pred EEEecCCCCcCccccCcHHHHHHHH
Q 002475 726 ILILADESLEDSIVHSDSRSLATLL 750 (917)
Q Consensus 726 vIilsd~~~~~~~~~~Da~~l~t~L 750 (917)
| |++.+. .-|...+..+|
T Consensus 60 V-v~th~h------~~D~~~L~~~l 77 (136)
T PF13478_consen 60 V-VMTHDH------ELDAEALEAAL 77 (136)
T ss_dssp E-E--S-C------CCHHHHHHHHT
T ss_pred E-EEcCCc------hhHHHHHHHHH
Confidence 6 566543 45665555544
No 186
>PRK06914 short chain dehydrogenase; Provisional
Probab=59.56 E-value=57 Score=35.24 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=51.9
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCc-CCceEEEEEcCcCCHhHHhc----
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLES---- 717 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l-~~~~v~~i~GD~t~~~~L~~---- 717 (917)
++++|.|.+ ..|..+++.|.+. |..|+++...++ ..+.+.+. .... .+..+.++.+|.++++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 75 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK---GYLVIATMRNPE--KQENLLSQ---ATQLNLQQNIKVQQLDVTDQNSIHNFQLV 75 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC---CCEEEEEeCCHH--HHHHHHHH---HHhcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 578999985 5599999999754 788888875432 22222110 0000 12347788999999988764
Q ss_pred -CCCCCccEEEEecCC
Q 002475 718 -LPLETFDSILILADE 732 (917)
Q Consensus 718 -a~Ie~adavIilsd~ 732 (917)
......|.+|-.+..
T Consensus 76 ~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 76 LKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHhcCCeeEEEECCcc
Confidence 112456888888764
No 187
>PRK05866 short chain dehydrogenase; Provisional
Probab=59.52 E-value=31 Score=38.08 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=52.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.+.++|.|.+. .|..++++|... +..|++++++++.++...++.. . .+.++.++.+|.++.+.+.++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~------G~~Vi~~~R~~~~l~~~~~~l~-~-~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR------GATVVAVARREDLLDAVADRIT-R-AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-h-cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35788888755 577888888652 5788888888776665543321 0 123567888898888876553
Q ss_pred --CcccccEEEEecC
Q 002475 457 --SVSKARAIIVLAS 469 (917)
Q Consensus 457 --gI~~A~aVIilt~ 469 (917)
.....+.+|-.+.
T Consensus 112 ~~~~g~id~li~~AG 126 (293)
T PRK05866 112 EKRIGGVDILINNAG 126 (293)
T ss_pred HHHcCCCCEEEECCC
Confidence 1235666666654
No 188
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=59.51 E-value=20 Score=39.56 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=49.8
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 384 HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
.++|.|. |-.|..+++.|... ++.|++++++++..+.. ...++.++.||..+.+.+.++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQ------GEEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHC------CCEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5888986 55688899998753 46788887765432211 123578899999999988775 45678
Q ss_pred EEEEecC
Q 002475 463 AIIVLAS 469 (917)
Q Consensus 463 aVIilt~ 469 (917)
.||-++.
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 8887764
No 189
>PRK09242 tropinone reductase; Provisional
Probab=59.47 E-value=33 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=49.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..++++|.+. +..|+++.++++..+....++.....+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4677888754 578888888753 56788888877766655443211111345777888888877665421
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
...-|.+|.++.
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 123455555553
No 190
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=59.46 E-value=9.3 Score=38.81 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=27.9
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCCh
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~ 680 (917)
.-++++|||||..|.-+++.|... |..|+|.+.+|.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECChH
Confidence 357899999999999999999876 888999998763
No 191
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=59.35 E-value=27 Score=39.16 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=53.0
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
++++|.|. |-.|..+++.|.+.. .+.+|++++..+. ....+.+ .+.+..+.++.||.+|.+.+.++ ++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~--~~~~~~~------~~~~~~~~~v~~Dl~d~~~l~~~-~~~ 74 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDEL--KQWEMQQ------KFPAPCLRFFIGDVRDKERLTRA-LRG 74 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChh--HHHHHHH------HhCCCcEEEEEccCCCHHHHHHH-Hhc
Confidence 57999998 567999999998652 2357877764322 1111211 11122467889999999998775 456
Q ss_pred ccEEEEecCC
Q 002475 723 FDSILILADE 732 (917)
Q Consensus 723 adavIilsd~ 732 (917)
+|.||-++..
T Consensus 75 iD~Vih~Ag~ 84 (324)
T TIGR03589 75 VDYVVHAAAL 84 (324)
T ss_pred CCEEEECccc
Confidence 8999988763
No 192
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=59.24 E-value=1.2e+02 Score=33.91 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=62.0
Q ss_pred EeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccEEEEe
Q 002475 388 LGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVL 467 (917)
Q Consensus 388 ~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~aVIil 467 (917)
||.|..+..+++.+.. +..|+.+|.+++-++...+++...+.+.++.+++||..+...+..-.. ..+.+++.
T Consensus 72 cGtG~~t~~Ll~~l~~-------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~-~~~~~~~~ 143 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA-AGRRLGFF 143 (301)
T ss_pred CCcchhHHHHHHhhcc-------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc-cCCeEEEE
Confidence 4445555566655531 467899999987666555443222234567889999987544332211 33555554
Q ss_pred cCC--CCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHc
Q 002475 468 ASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV 514 (917)
Q Consensus 468 t~d--~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~~ 514 (917)
.+. .+-...|..+++.-+ .+.++|+ ...+.-+.-......+..+
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i-~~~L~pg--G~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRI-RQLLGPG--GGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred ecccccCCCHHHHHHHHHHH-HHhcCCC--CEEEEeccCCCCHHHHHHh
Confidence 443 232333443333332 3456774 3466566655555555444
No 193
>PRK08339 short chain dehydrogenase; Provisional
Probab=59.24 E-value=33 Score=37.05 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=44.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
..++|.|.+. .+..++++|.+. |..|++++.+++..+...+++.. ..+.++.++.+|.++++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARA------GADVILLSRNEENLKKAREKIKS-ESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHH
Confidence 4578888765 688888888753 56788888887766554433211 1123577788888888776553
No 194
>PLN02366 spermidine synthase
Probab=59.12 E-value=35 Score=38.34 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=50.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCCh-HHHHHH-hhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKK-LTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~-~Er~~~-l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 718 (917)
..+++|+++|.|.-+ +++++.++ .+...++++|-++. -+.++. +.+.+ ..+.+.++.++.||+.. .|++.
T Consensus 90 ~~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~---~~~~dpRv~vi~~Da~~--~l~~~ 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLA---VGFDDPRVNLHIGDGVE--FLKNA 161 (308)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhc---cccCCCceEEEEChHHH--HHhhc
Confidence 347899999999864 45666655 23357889886542 122222 11100 12445568889999753 45554
Q ss_pred CCCCccEEEEecC
Q 002475 719 PLETFDSILILAD 731 (917)
Q Consensus 719 ~Ie~adavIilsd 731 (917)
.-+++|.||+-+.
T Consensus 162 ~~~~yDvIi~D~~ 174 (308)
T PLN02366 162 PEGTYDAIIVDSS 174 (308)
T ss_pred cCCCCCEEEEcCC
Confidence 4468999998543
No 195
>PRK01581 speE spermidine synthase; Validated
Probab=59.12 E-value=1.2e+02 Score=35.04 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=53.0
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc------cccCCccEEEEEECCCCHHHHh
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE------FDFMGTSVICRSGSPLILADLK 454 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~------~~~~~~~V~~i~Gd~~d~e~L~ 454 (917)
...+|+|+|.|. |. .++++.... ....|+++|.|++.++....-.. ..+.+.++.++.||+.+. |.
T Consensus 150 ~PkrVLIIGgGd-G~-tlrelLk~~----~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f--L~ 221 (374)
T PRK01581 150 DPKRVLILGGGD-GL-ALREVLKYE----TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF--LS 221 (374)
T ss_pred CCCEEEEECCCH-HH-HHHHHHhcC----CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH--HH
Confidence 346999999995 33 567766421 23679999999987765432000 123456899999998853 33
Q ss_pred ccCcccccEEEEecCC
Q 002475 455 KVSVSKARAIIVLASD 470 (917)
Q Consensus 455 rAgI~~A~aVIilt~d 470 (917)
+. -++-|.||+-..+
T Consensus 222 ~~-~~~YDVIIvDl~D 236 (374)
T PRK01581 222 SP-SSLYDVIIIDFPD 236 (374)
T ss_pred hc-CCCccEEEEcCCC
Confidence 32 2468999987655
No 196
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.08 E-value=29 Score=38.36 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=50.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
...++|.|.+. .|..++++|... +..|+++.++++..+...+++.....+.++.++.+|..+.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 35788888765 578888888753 46777787776655443332211111235777888888888776541
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
..+.|.+|-.+.
T Consensus 90 ~~~~~~iD~li~nAg 104 (306)
T PRK06197 90 RAAYPRIDLLINNAG 104 (306)
T ss_pred HhhCCCCCEEEECCc
Confidence 224566666553
No 197
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=58.94 E-value=35 Score=37.10 Aligned_cols=86 Identities=7% Similarity=0.048 Sum_probs=54.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
..+-+++|+|.|..+..+++..... |.+|++++++++ .+.+ ..+++.. .++..++ ++.+.. +
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~~-----~~~~-----~~~~~~~-~~~~~~~--~~~~~~--~ 159 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPL---PCRVTWVDSREA-----EFPE-----DLPDGVA-TLVTDEP--EAEVAE--A 159 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCcc-----cccc-----cCCCCce-EEecCCH--HHHHhc--C
Confidence 3456999999999999999988754 899999997542 1111 1234432 2333332 344443 4
Q ss_pred CCccEEEEecCCCCcCccccCcHHHHHHHH
Q 002475 721 ETFDSILILADESLEDSIVHSDSRSLATLL 750 (917)
Q Consensus 721 e~adavIilsd~~~~~~~~~~Da~~l~t~L 750 (917)
..-+.+|+++.+. .-|...+..+|
T Consensus 160 ~~~t~vvi~th~h------~~D~~~L~~aL 183 (246)
T TIGR02964 160 PPGSYFLVLTHDH------ALDLELCHAAL 183 (246)
T ss_pred CCCcEEEEEeCCh------HHHHHHHHHHH
Confidence 5667888888643 34666565555
No 198
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=58.78 E-value=27 Score=42.11 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHhhhccCC--CCC-cCCccCeeeeehhhhhh-HHHHHHHHH
Q 002475 312 SSFAEALWLSWTFVADSGN--HAD-RVGTGPRIVSVSISSGG-MLIFAMMLG 359 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGy--gd~-~~t~~gRi~~v~lil~G-i~i~a~~ig 359 (917)
.+|.+.+|-....+.|+|. |.. +.+..+++...++|+.| ++.+...+.
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lA 501 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLA 501 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999986 323 35678898888777776 444444444
No 199
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=58.69 E-value=30 Score=40.17 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhhhcC-CCHHHHHHHHHHhhhccCCCCCc
Q 002475 296 IFLIIFGGLALYAVSD-SSFAEALWLSWTFVADSGNHADR 334 (917)
Q Consensus 296 l~lil~g~~~~~~~e~-~s~~dAly~~~~tvTTvGygd~~ 334 (917)
+++.+++.+.|+. .+ .+++||++.++.+++|.||.-.+
T Consensus 111 ~~lt~l~~~~~~~-~g~~~~~~Aif~avSa~~taGFs~~~ 149 (390)
T TIGR00933 111 LLGTILLAVRFVL-TGWMPLFDAIFHSISAFNNGGFSTHS 149 (390)
T ss_pred HHHHHHHHHHHHH-hcchHHHHHHHHHHHHHhcCCcCCCC
Confidence 3334444444443 44 89999999999999999996543
No 200
>PRK05867 short chain dehydrogenase; Provisional
Probab=58.46 E-value=36 Score=36.18 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=45.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|.+. +..|++++++++..+...+++.. .+.++.++.+|.++++.++++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEA------GAQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHH
Confidence 35688888765 588888888753 56788888887776655443211 123567778888888776553
No 201
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=58.27 E-value=37 Score=36.26 Aligned_cols=80 Identities=25% Similarity=0.282 Sum_probs=52.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
..+++|.|.+. .+..+++.|... +..|++++++++..+....... -.+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA------GARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 36789998755 577888888752 5678888888766555433221 01235778899999988885521
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|-++.
T Consensus 84 ~~~~~~id~vi~~ag 98 (259)
T PRK08213 84 LERFGHVDILVNNAG 98 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577777664
No 202
>PLN02583 cinnamoyl-CoA reductase
Probab=58.22 E-value=33 Score=37.88 Aligned_cols=79 Identities=8% Similarity=-0.062 Sum_probs=50.5
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHH-HHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER-EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er-~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.++++|.|. |..|..+++.|.+. |.+|+.+...+..+. .+.+.+.. . .+.++.++.+|.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~---G~~V~~~~R~~~~~~~~~~~~~l~----~-~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR---GYTVHAAVQKNGETEIEKEIRGLS----C-EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEEcCchhhhHHHHHHhcc----c-CCCceEEEEecCCCHHHHHHH-H
Confidence 468999998 56799999999764 788887764322221 11122100 0 012366789999999988765 4
Q ss_pred CCccEEEEec
Q 002475 721 ETFDSILILA 730 (917)
Q Consensus 721 e~adavIils 730 (917)
..+|.++-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5678877543
No 203
>PRK07576 short chain dehydrogenase; Provisional
Probab=58.12 E-value=34 Score=36.87 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=51.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--C-
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--g- 457 (917)
..+++|.|.+. .+..++++|... ++.|++++++++..+.....+.. .+.++.++.+|.++++.++++ .
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA------GANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 46889998865 577788888752 57788888877665544332211 123467788899998887663 1
Q ss_pred ---cccccEEEEec
Q 002475 458 ---VSKARAIIVLA 468 (917)
Q Consensus 458 ---I~~A~aVIilt 468 (917)
....|.+|...
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 12457776554
No 204
>PRK06194 hypothetical protein; Provisional
Probab=58.07 E-value=61 Score=35.11 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |..|++++..+. ..+.+.+. + .-.+.++.++.+|.++.+.++++-
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL---GMKLVLADVQQD--ALDRAVAE-L---RAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC---CCEEEEEeCChH--HHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 3689999985 5699999999764 788888875432 22221110 0 001345778999999998887641
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 77 ~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1346888888765
No 205
>PRK00811 spermidine synthase; Provisional
Probab=58.03 E-value=87 Score=34.65 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=52.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc---c-ccCCccEEEEEECCCCHHHHhcc
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---F-DFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~---~-~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
...+|+++|.|. +.+++++... .....|+++|.|++.++...+.+. . .+...++.++.||+.. -+++
T Consensus 76 ~p~~VL~iG~G~--G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGD--GGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE- 146 (283)
T ss_pred CCCEEEEEecCc--hHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-
Confidence 356899999996 4556666542 123579999999987765533221 0 0135678999999865 3333
Q ss_pred CcccccEEEEecCC
Q 002475 457 SVSKARAIIVLASD 470 (917)
Q Consensus 457 gI~~A~aVIilt~d 470 (917)
.-.+-|.||+...+
T Consensus 147 ~~~~yDvIi~D~~d 160 (283)
T PRK00811 147 TENSFDVIIVDSTD 160 (283)
T ss_pred CCCcccEEEECCCC
Confidence 34578999886544
No 206
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=57.45 E-value=37 Score=35.66 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=53.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--c
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I 458 (917)
.+.++|.|.+. .+..++++|.+. +..|+++.++++..+.....+.. .+.++.++.+|..+.+.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD------GAEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35788888654 578888998753 46778888776554443332211 1235788999999998887741 1
Q ss_pred ----ccccEEEEecCC
Q 002475 459 ----SKARAIIVLASD 470 (917)
Q Consensus 459 ----~~A~aVIilt~d 470 (917)
...+.+|-++..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 257777777644
No 207
>PRK09291 short chain dehydrogenase; Provisional
Probab=57.27 E-value=70 Score=33.86 Aligned_cols=80 Identities=13% Similarity=-0.002 Sum_probs=53.0
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
++++|.|.+ ..|..+++.|.+. |..++++...+. ..+.+.+.. .-.+..+.++.+|.++++.++++--..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~---G~~v~~~~r~~~--~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK---GHNVIAGVQIAP--QVTALRAEA----ARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHHH----HhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 579999985 5699999999764 778887765432 222222100 001223677899999999988764447
Q ss_pred ccEEEEecCC
Q 002475 723 FDSILILADE 732 (917)
Q Consensus 723 adavIilsd~ 732 (917)
.|.+|-.+..
T Consensus 74 id~vi~~ag~ 83 (257)
T PRK09291 74 VDVLLNNAGI 83 (257)
T ss_pred CCEEEECCCc
Confidence 8988887653
No 208
>PRK05875 short chain dehydrogenase; Provisional
Probab=57.25 E-value=42 Score=36.14 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=52.3
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+ ..+..+++.|.+. +..|+++.++++..+....+........++.++.+|..+++.++++-
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAA------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4678999975 4678888888753 56788888877665544332210001235778889999888776541
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....|.+|-++.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677777664
No 209
>PRK07109 short chain dehydrogenase; Provisional
Probab=57.14 E-value=36 Score=38.38 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..++++|... +..|+++.++++.++...++.. -.+.++.++.+|.+|++.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~------G~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR------GAKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888765 577788888753 5678888888776665544321 11346778899999998887651
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 123466655443
No 210
>PRK07890 short chain dehydrogenase; Provisional
Probab=57.08 E-value=37 Score=36.07 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=51.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.+.++|.|.+. .+..++++|... +..|++++++++..+....+.. -.+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA------GADVVLAARTAERLDEVAAEID--DLGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--HhCCceEEEecCCCCHHHHHHHHHHH
Confidence 45788888765 577888888752 5678888887766555443321 0133577888888888877542
Q ss_pred --CcccccEEEEecC
Q 002475 457 --SVSKARAIIVLAS 469 (917)
Q Consensus 457 --gI~~A~aVIilt~ 469 (917)
.....|.+|-.+.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1235677666654
No 211
>PLN02214 cinnamoyl-CoA reductase
Probab=57.08 E-value=63 Score=36.51 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=51.9
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHH-HHHhhccccCCccEEEEEECCCCHHHHhccCcc
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEM-DIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~-~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~ 459 (917)
.++++|.|. |-.+..++++|.+. ++.|+.+.++.+.... .+..+. . ...++.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELE-G-GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhh-C-CCCcEEEEecCcCChHHHHHH-Hh
Confidence 457999998 45688889998753 4667766655432111 111110 0 113577899999999988765 44
Q ss_pred cccEEEEecCC
Q 002475 460 KARAIIVLASD 470 (917)
Q Consensus 460 ~A~aVIilt~d 470 (917)
.++.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68899988864
No 212
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=56.93 E-value=1.1e+02 Score=33.96 Aligned_cols=121 Identities=14% Similarity=0.262 Sum_probs=68.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|+|..+..+++.|... +..|++.+++++..+...+ .+.. +...++|.++ +.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~~-l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSADLARITE--------MGLI-----PFPLNKLEEK-VAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHHH-hccC
Confidence 45899999999999999888653 4578888888766544321 1111 1223444432 4689
Q ss_pred cEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEe-cCCC--CHHHHHHcCCCeEEEecc-------HHHHHHH
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM-SDLD--NEPLVKLVGGELIETVVA-------HDVIGRL 531 (917)
Q Consensus 462 ~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v-~d~e--~~~~l~~~Gad~VevV~~-------~el~a~l 531 (917)
|.||..++. . +...-.+..+.++ .++.-+ .++. .-+..++.|+..+ .++ +...+.+
T Consensus 211 DiVint~P~------~---ii~~~~l~~~k~~---aliIDlas~Pg~tdf~~Ak~~G~~a~--~~~glPg~~ap~ta~~i 276 (287)
T TIGR02853 211 DIVINTIPA------L---VLTADVLSKLPKH---AVIIDLASKPGGTDFEYAKKRGIKAL--LAPGLPGIVAPKTAGKI 276 (287)
T ss_pred CEEEECCCh------H---HhCHHHHhcCCCC---eEEEEeCcCCCCCCHHHHHHCCCEEE--EeCCCCcccCchhHHHH
Confidence 999988743 1 1111122334442 233333 3332 2366778887652 222 4556666
Q ss_pred HHHHH
Q 002475 532 MIQCA 536 (917)
Q Consensus 532 La~~~ 536 (917)
+++.+
T Consensus 277 ~~~~~ 281 (287)
T TIGR02853 277 LANVL 281 (287)
T ss_pred HHHHH
Confidence 66644
No 213
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.88 E-value=21 Score=42.36 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=45.6
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChH---HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~---Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 718 (917)
..++++|+|+|..|..+++.|.+. |.+|++++..+.+ ...+.+.+. + +.+..|+...
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~---G~~V~~~d~~~~~~~~~~~~~l~~~--------g--v~~~~~~~~~------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL---GARVTVVDDGDDERHRALAAILEAL--------G--ATVRLGPGPT------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchhhhHHHHHHHHHc--------C--CEEEECCCcc-------
Confidence 356899999999999999888754 7889999854321 122334332 2 3444555332
Q ss_pred CCCCccEEEEecCC
Q 002475 719 PLETFDSILILADE 732 (917)
Q Consensus 719 ~Ie~adavIilsd~ 732 (917)
....+|.||+.++-
T Consensus 75 ~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 75 LPEDTDLVVTSPGW 88 (480)
T ss_pred ccCCCCEEEECCCc
Confidence 23568888876653
No 214
>PRK05650 short chain dehydrogenase; Provisional
Probab=56.77 E-value=36 Score=36.64 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=50.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC-----
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg----- 457 (917)
+++|.|.+. .+..++++|.+. +..|++++.+.+..+.....+. -.+.++.++.+|.++++.+.++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE------GWRLALADVNEEGGEETLKLLR--EAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 688988764 578888998753 5678888887766655443321 11346778888998888776531
Q ss_pred -cccccEEEEecC
Q 002475 458 -VSKARAIIVLAS 469 (917)
Q Consensus 458 -I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 74 ~~~~id~lI~~ag 86 (270)
T PRK05650 74 KWGGIDVIVNNAG 86 (270)
T ss_pred HcCCCCEEEECCC
Confidence 124566665554
No 215
>PRK06180 short chain dehydrogenase; Provisional
Probab=56.74 E-value=36 Score=36.96 Aligned_cols=63 Identities=21% Similarity=0.037 Sum_probs=43.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
+.++|.|.+. .+..++++|... |..|++++++++..+..... .+.++.++.+|.++++.+.++
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~------G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~ 68 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAA------GHRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAV 68 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhC------cCEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHH
Confidence 4689998765 577888888652 57788888887766544321 123577788888888877653
No 216
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=56.49 E-value=16 Score=36.55 Aligned_cols=77 Identities=23% Similarity=0.224 Sum_probs=45.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc-cc-cCCccEEEEEECCCCHHHHhccCcccc
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FD-FMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~-~~-~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
+|.|||.|..+..++..|... ++.|.|-..+++.++.+..... .. +.+.... .+..-..+|++ -+++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~---~~i~~t~dl~~-a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLP---ENIKATTDLEE-ALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEE---TTEEEESSHHH-HHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccC---cccccccCHHH-HhCcc
Confidence 478999999888888888753 6899999999988777654321 01 1111110 00000123333 24688
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.||+..+.
T Consensus 71 d~IiiavPs 79 (157)
T PF01210_consen 71 DIIIIAVPS 79 (157)
T ss_dssp SEEEE-S-G
T ss_pred cEEEecccH
Confidence 999988854
No 217
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=56.45 E-value=37 Score=36.10 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=51.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..++++|.+. +..|+++..+++..+...+++. . .+.++.++.+|.++.+.++++-
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQDGANAVADEIN-K-AGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChHHHHHHHHHHH-h-cCceEEEEECCCCCHHHHHHHHHHHH
Confidence 5788888855 577888998753 5678888888766555444321 1 1335778889999888876541
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|-++.
T Consensus 80 ~~~~~~d~vi~~ag 93 (262)
T PRK13394 80 ERFGSVDILVSNAG 93 (262)
T ss_pred HHcCCCCEEEECCc
Confidence 123566666554
No 218
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.36 E-value=28 Score=37.10 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=54.0
Q ss_pred CCCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002475 642 YPEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 642 ~~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 719 (917)
..++++|.|.+ ..|..+++.|.+. |..|+++...+ +..+.+.+ .+++.++.++.+|.++++.+.++-
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~---g~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA---GARVHVCDVSE--AALAATAA------RLPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------HHhcCceEEEEccCCCHHHHHHHHH
Confidence 35799999985 4599999999764 77888887643 22333322 112224677899999999776521
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
....|.||-.+..
T Consensus 79 ~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 TAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2468999887754
No 219
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=56.28 E-value=39 Score=36.19 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=48.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
..++|.|.+. .|..++++|.+. +..|++++++.+.++...+. .+.++.++.+|.++.+.+.++=
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCV 74 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHH
Confidence 5677888765 578888888753 57788888877666554321 1235777888988877665431
Q ss_pred --cccccEEEEec
Q 002475 458 --VSKARAIIVLA 468 (917)
Q Consensus 458 --I~~A~aVIilt 468 (917)
...-|.+|-.+
T Consensus 75 ~~~g~id~li~~A 87 (262)
T TIGR03325 75 AAFGKIDCLIPNA 87 (262)
T ss_pred HHhCCCCEEEECC
Confidence 12345555554
No 220
>PRK07074 short chain dehydrogenase; Provisional
Probab=56.15 E-value=48 Score=35.23 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=53.2
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc---
Q 002475 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (917)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI--- 458 (917)
..++|.|.+ ..+..+++.|.+. +..|++++.+++..+...+.. .+.++.++.+|..+.+.+.++--
T Consensus 3 k~ilItGat~~iG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA------GDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888875 4688888888752 467888888877666554332 23457889999999998865321
Q ss_pred ---ccccEEEEecCC
Q 002475 459 ---SKARAIIVLASD 470 (917)
Q Consensus 459 ---~~A~aVIilt~d 470 (917)
...|.+|-+...
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVANAGA 87 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 246777777754
No 221
>PRK05717 oxidoreductase; Validated
Probab=56.14 E-value=46 Score=35.44 Aligned_cols=77 Identities=19% Similarity=0.097 Sum_probs=49.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--C-
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--g- 457 (917)
.+.++|.|.+. .|..++++|.+. +..|++++.+++..+...+.. +.++.++.+|.++.+.++++ .
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE------GWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 35688888754 588888888753 467888887765544433221 23577889999998876553 1
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....|.+|-++.
T Consensus 79 ~~~~g~id~li~~ag 93 (255)
T PRK05717 79 LGQFGRLDALVCNAA 93 (255)
T ss_pred HHHhCCCCEEEECCC
Confidence 123566666654
No 222
>PRK06139 short chain dehydrogenase; Provisional
Probab=56.14 E-value=36 Score=38.44 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=53.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
..+++|.|.+. .+..++++|.+. +..|+++.++++.+++..++.. . .+.++.++..|.++++.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~------G~~Vvl~~R~~~~l~~~~~~~~-~-~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR------GARLVLAARDEEALQAVAEECR-A-LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-h-cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45788999865 577888888753 5678888888877765544321 1 1345777888888888877641
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 134566666554
No 223
>PRK06196 oxidoreductase; Provisional
Probab=55.96 E-value=31 Score=38.34 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
..++|.|.+. .|..++++|... +..|+++.++++..+...+++ .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~------G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQA------GAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4688888765 578888888753 567888888877666544332 13667888988888776531
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 134566666553
No 224
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.96 E-value=35 Score=36.79 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=43.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
+.++|.|.+. .|..++++|... +..|++.+.+++.++...... ..+.++.+|.++++.+++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~ 67 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAA 67 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHH
Confidence 4788999865 577788888752 567888888887766544322 136678889888887654
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.92 E-value=41 Score=35.06 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=52.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--Cc-
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--gI- 458 (917)
.+++|.|.+. .+..++++|.+. ++.|+++.++++..+....... ..+.++.++.+|.++++.+.++ ++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD------GAKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999765 578888888753 4568888888766554433221 1134577888999998887664 22
Q ss_pred ---ccccEEEEecCC
Q 002475 459 ---SKARAIIVLASD 470 (917)
Q Consensus 459 ---~~A~aVIilt~d 470 (917)
...+.+|-++..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 234777777643
No 226
>PLN02427 UDP-apiose/xylose synthase
Probab=55.82 E-value=42 Score=38.43 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
...+|+|.|. |-.|..+++.|.+. .|.+|+.++..+ ++...+.+.+. ..+. ..+.++.||.+|.+.+.++ +
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~--~~~~-~~~~~~~~Dl~d~~~l~~~-~ 84 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDT--VPWS-GRIQFHRINIKHDSRLEGL-I 84 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhcccc--ccCC-CCeEEEEcCCCChHHHHHH-h
Confidence 3457999998 67899999999764 247788887533 23333322110 0011 2477899999999988875 4
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
..+|.||=++..
T Consensus 85 ~~~d~ViHlAa~ 96 (386)
T PLN02427 85 KMADLTINLAAI 96 (386)
T ss_pred hcCCEEEEcccc
Confidence 568999988753
No 227
>PRK04457 spermidine synthase; Provisional
Probab=55.81 E-value=1.2e+02 Score=33.13 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=50.9
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+|+++|.|. +.+...+.... .+..|+.+|.|++.++...+.+.......++.++.||+.+. +.+. -+..
T Consensus 67 ~~~vL~IG~G~--G~l~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~--l~~~-~~~y 137 (262)
T PRK04457 67 PQHILQIGLGG--GSLAKFIYTYL----PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY--IAVH-RHST 137 (262)
T ss_pred CCEEEEECCCH--hHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--HHhC-CCCC
Confidence 35799999994 56666665432 23578999999988775543322211235788999987643 3332 2568
Q ss_pred cEEEEecC
Q 002475 462 RAIIVLAS 469 (917)
Q Consensus 462 ~aVIilt~ 469 (917)
|.|++-..
T Consensus 138 D~I~~D~~ 145 (262)
T PRK04457 138 DVILVDGF 145 (262)
T ss_pred CEEEEeCC
Confidence 88887653
No 228
>PRK05884 short chain dehydrogenase; Provisional
Probab=55.72 E-value=32 Score=36.20 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=47.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc---c
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI---~ 459 (917)
+++|.|.+. .+..++++|... +..|+++++++++.+...++ .++.++.+|.++++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~------g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND------GHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 588998754 577788888652 57888888887776654332 134567889999888776411 1
Q ss_pred cccEEEEec
Q 002475 460 KARAIIVLA 468 (917)
Q Consensus 460 ~A~aVIilt 468 (917)
..|.+|-+.
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 345555543
No 229
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=55.72 E-value=23 Score=41.07 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=50.7
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH--HHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~--l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
...|+|.|. |..+..++++|... ++.|+++.+++...+.. .... .. ...++.++.||.+|++.+.++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~-~~-~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR------GYNVVAVAREKSGIRGKNGKEDT-KK-ELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEEechhhccccchhhHH-hh-hcCCceEEEeeCCCHHHHHHHHH
Confidence 446889987 45688889999753 46777777665432100 0000 00 12357889999999999987622
Q ss_pred c---cccEEEEecC
Q 002475 459 S---KARAIIVLAS 469 (917)
Q Consensus 459 ~---~A~aVIilt~ 469 (917)
. .++.||.+..
T Consensus 132 ~~~~~~D~Vi~~aa 145 (390)
T PLN02657 132 SEGDPVDVVVSCLA 145 (390)
T ss_pred HhCCCCcEEEECCc
Confidence 2 5888886543
No 230
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=55.57 E-value=97 Score=36.27 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=51.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.++++|.|.+. .|..++++|... |..|++++.+++..+..... ...++.++.+|.++++.+.+. +.+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~------G~~Vi~l~r~~~~l~~~~~~-----~~~~v~~v~~Dvsd~~~v~~~-l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ------GAKVVALTSNSDKITLEING-----EDLPVKTLHWQVGQEAALAEL-LEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCCeEEEEeeCCCHHHHHHH-hCC
Confidence 35788888865 578888888753 56778787776554433221 122466788999999987664 456
Q ss_pred ccEEEEecC
Q 002475 461 ARAIIVLAS 469 (917)
Q Consensus 461 A~aVIilt~ 469 (917)
.|.+|..+.
T Consensus 246 IDiLInnAG 254 (406)
T PRK07424 246 VDILIINHG 254 (406)
T ss_pred CCEEEECCC
Confidence 888887654
No 231
>PRK08264 short chain dehydrogenase; Validated
Probab=55.42 E-value=46 Score=34.88 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=50.9
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~-~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-- 457 (917)
..+++|.|.+ ..+..++++|... +. .|+++.++++..+. .+.++.++.+|..+.+.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~------G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR------GAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 4578899865 4678888888753 44 78888877655432 1346888999999998877642
Q ss_pred cccccEEEEecCC
Q 002475 458 VSKARAIIVLASD 470 (917)
Q Consensus 458 I~~A~aVIilt~d 470 (917)
....|.+|-...-
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346777776643
No 232
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=55.29 E-value=27 Score=40.25 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=49.0
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
..+++|+|.|..|..+++.+.+. |..|++++..+ ++.+.+... +.. .+..+..+.+.|.++ +.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~~--~~~~~l~~~------~g~----~v~~~~~~~~~l~~~-l~~ 230 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL---GATVTILDINI--DRLRQLDAE------FGG----RIHTRYSNAYEIEDA-VKR 230 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECCH--HHHHHHHHh------cCc----eeEeccCCHHHHHHH-Hcc
Confidence 45699999999999999999865 66788888643 455554331 111 122344556667665 678
Q ss_pred ccEEEEec
Q 002475 723 FDSILILA 730 (917)
Q Consensus 723 adavIils 730 (917)
||.+|..+
T Consensus 231 aDvVI~a~ 238 (370)
T TIGR00518 231 ADLLIGAV 238 (370)
T ss_pred CCEEEEcc
Confidence 99888765
No 233
>PRK06181 short chain dehydrogenase; Provisional
Probab=55.22 E-value=41 Score=35.88 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=50.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
+.++|.|.+. .+..+++.|... +..|++++.+++..+...+.+.. .+.++.++.+|.++++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~------g~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA------GAQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4688999855 577788888642 46788888877665554332211 133577888898888876653
Q ss_pred -CcccccEEEEecC
Q 002475 457 -SVSKARAIIVLAS 469 (917)
Q Consensus 457 -gI~~A~aVIilt~ 469 (917)
.....+.+|-++.
T Consensus 74 ~~~~~id~vi~~ag 87 (263)
T PRK06181 74 ARFGGIDILVNNAG 87 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 1124566666553
No 234
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=55.14 E-value=17 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred eEEEEccccCHHHHHHHHHHhcCCCCeEEEEccC
Q 002475 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (917)
Q Consensus 645 hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~ 678 (917)
|++|+|.|-.+..++..|.+. |.++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~---g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL---GKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHh---CcEEEEEecc
Confidence 689999999999999999875 7899999864
No 235
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=55.10 E-value=27 Score=31.82 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002475 159 TYYMLIINCILCVCYAIHLRDRVEKLEEENSSL 191 (917)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (917)
.++++.+.+.+++++..|++.|+.+++.++..|
T Consensus 3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 3 NLQIVGGVGAVVALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666668887877777776665
No 236
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=54.75 E-value=44 Score=38.11 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=51.9
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCC-eEEEEccCChHH-------------------HHHHhhcCCCCccCc-CCc
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKE-------------------REKKLTDGGLDISGL-MNI 700 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~i~II~~~p~~E-------------------r~~~l~~~gl~~~~l-~~~ 700 (917)
...+|+|+|-|..|..+++.|.+. |. +++++|.+..++ +.+.+++. ..++ +++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~---l~~inp~v 96 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR---LEEINSDV 96 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH---HHHHCCCc
Confidence 357999999999999999999865 54 899998642110 11111100 0011 456
Q ss_pred eEEEEEcCcCCHhHHhcCCCCCccEEEEecC
Q 002475 701 KLVHREGNAVIRRHLESLPLETFDSILILAD 731 (917)
Q Consensus 701 ~v~~i~GD~t~~~~L~~a~Ie~adavIilsd 731 (917)
.+..+..+.+... +.+. +.++|.||..+|
T Consensus 97 ~v~~~~~~~~~~~-~~~~-~~~~DlVid~~D 125 (339)
T PRK07688 97 RVEAIVQDVTAEE-LEEL-VTGVDLIIDATD 125 (339)
T ss_pred EEEEEeccCCHHH-HHHH-HcCCCEEEEcCC
Confidence 6777777766543 3333 778998888765
No 237
>PRK06179 short chain dehydrogenase; Provisional
Probab=54.70 E-value=23 Score=38.16 Aligned_cols=73 Identities=16% Similarity=0.016 Sum_probs=49.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
...++|.|.+. .|..++++|... +..|+++.++++..+. ..++.++.+|.+|++.++++=
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA------GYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHH
Confidence 34688888765 577888888752 5678888887654321 135678899999998887641
Q ss_pred ---cccccEEEEecCC
Q 002475 458 ---VSKARAIIVLASD 470 (917)
Q Consensus 458 ---I~~A~aVIilt~d 470 (917)
....|.+|..+.-
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 1235666666543
No 238
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=54.60 E-value=22 Score=41.46 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=51.9
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g-~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
..++++|+|.|..+..+++.|.+. | ..++|.+. ..||.+.|++ ++. |.+...+.|.+. +
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNR--T~erA~~La~------~~~--------~~~~~l~el~~~-l 236 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANR--TLERAEELAK------KLG--------AEAVALEELLEA-L 236 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcC--CHHHHHHHHH------HhC--------CeeecHHHHHHh-h
Confidence 467999999999999999999865 5 55666665 3578888876 222 555555555444 8
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
..||.||..|..
T Consensus 237 ~~~DvVissTsa 248 (414)
T COG0373 237 AEADVVISSTSA 248 (414)
T ss_pred hhCCEEEEecCC
Confidence 899988887753
No 239
>PRK09072 short chain dehydrogenase; Provisional
Probab=54.31 E-value=46 Score=35.65 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=52.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
...++|.|.+. .+..++++|.+. |..|++++.+++..+....+. . .+.++.++.+|..+++.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~--~-~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA------GARLLLVGRNAEKLEALAARL--P-YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--h-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35688888755 578888888752 567888888877666554332 1 1236778889999988766531
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|.++.
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 234677777654
No 240
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=54.13 E-value=1.5e+02 Score=29.62 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=54.2
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
.+|=++|.|..+..+++.|... ++.|.+.|.+++.++...+. ++.. ..++.++ ++.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 4788999999999999999753 68899999999888876542 2221 1233333 34568
Q ss_pred EEEEecCCCCCCcchHHHHHHHHH---HhhhcCCCCceEEEEecCC
Q 002475 463 AIIVLASDENADQSDARALRVVLS---LTGVKEGLRGHVVVEMSDL 505 (917)
Q Consensus 463 aVIilt~d~~~~~sD~~Ni~~~La---ar~l~p~~~~~IIA~v~d~ 505 (917)
.|+++..+ |...-.++.. +..+.+ ..+++-+...
T Consensus 60 vvi~~v~~------~~~v~~v~~~~~i~~~l~~---g~iiid~sT~ 96 (163)
T PF03446_consen 60 VVILCVPD------DDAVEAVLFGENILAGLRP---GKIIIDMSTI 96 (163)
T ss_dssp EEEE-SSS------HHHHHHHHHCTTHGGGS-T---TEEEEE-SS-
T ss_pred ceEeeccc------chhhhhhhhhhHHhhcccc---ceEEEecCCc
Confidence 88888754 3332233332 233433 3577766554
No 241
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=54.11 E-value=37 Score=36.31 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCeEEEEccccC-HHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~~-~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+.. |..+++.|.+. |..+++++....++..+.+.+ .+.++.++.+|.++++.++++-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~---G~~vv~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA---GADIVGVGVAEAPETQAQVEA--------LGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEecCchHHHHHHHHHH--------cCCeEEEEEeCCCCHHHHHHHHHH
Confidence 468899998654 99999999764 888888865332222233322 1234678899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 77 ~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2457888776653
No 242
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.98 E-value=37 Score=36.31 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=52.0
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |..+++++..+ ++.+.+.+. + .-.. ++.++.+|.++++.+.++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-~---~~~~-~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ---GATLGLVARRT--DALQAFAAR-L---PKAA-RVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHh-c---ccCC-eeEEEEcCCCCHHHHHHHHHH
Confidence 3589999975 4599999999764 78888888643 333333221 0 0011 5778999999988775531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.++.
T Consensus 72 ~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 72 FIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHhCCCCCEEEECCCc
Confidence 2346888877653
No 243
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.74 E-value=41 Score=36.07 Aligned_cols=81 Identities=20% Similarity=0.118 Sum_probs=49.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHH-HHHHHHhhccccCCccEEEEEECCCCHHHHhcc---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~-~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--- 456 (917)
.++++|.|.+. .|..++++|... ++..|+++.++++. ++...++.. .....++.++.+|.++++..+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~-----gg~~V~~~~r~~~~~~~~~~~~l~-~~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKN-----APARVVLAALPDDPRRDAAVAQMK-AAGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-----CCCeEEEEeCCcchhHHHHHHHHH-hcCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 477788888752 23677787776654 444433221 11123578889999887764432
Q ss_pred --CcccccEEEEec
Q 002475 457 --SVSKARAIIVLA 468 (917)
Q Consensus 457 --gI~~A~aVIilt 468 (917)
.-.+.|.+|..+
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 012566666544
No 244
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=53.74 E-value=1.3e+02 Score=35.18 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002475 159 TYYMLIINCILCVCYAIHLRDRVEKLEEE 187 (917)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (917)
...+++.-+++++..+.++..++.++..+
T Consensus 207 ~~~~~~~~i~f~~~~l~~~~~ei~~i~~~ 235 (425)
T PF08016_consen 207 DYFVLLCEILFVLFVLYFLYREIKKIRRE 235 (425)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555666777777777655
No 245
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=53.69 E-value=1.3e+02 Score=33.50 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
+|-|+|.|..+..+++.|... ++.|++.+.+++.++...+. +... ..+.+++.+ .+..+|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~-~~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQ-RLSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHh-hcCCCCE
Confidence 688999999999999999753 57888899999887765431 1111 134445443 2457899
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
|+++..+
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9999865
No 246
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=53.67 E-value=98 Score=32.33 Aligned_cols=82 Identities=11% Similarity=-0.043 Sum_probs=51.7
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+. .|..+++.|.+. |..++++...+.++..+...... ..+.++.++.+|.++++.++++-
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLND---GYRVIATYFSGNDCAKDWFEEYG-----FTEDQVRLKELDVTDTEECAEALAE 73 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCcHHHHHHHHHHhh-----ccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789988754 599999999764 77888887543321111111110 11234778899999988765531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (245)
T PRK12824 74 IEEEEGPVDILVNNAGI 90 (245)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2357888887754
No 247
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.58 E-value=66 Score=33.58 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=52.3
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcC-CceEEEEEcCcCCHhHHhcCC-
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~-~~~v~~i~GD~t~~~~L~~a~- 719 (917)
.+.++|.|. |..|..+++.|.+. |..|+++...+ ++...+.+ .+. ...+.++.+|.++++.++++-
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~r~~--~~~~~~~~------~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITARDQ--KELEEAAA------ELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEeeCCH--HHHHHHHH------HHhccCcEEEEEccCCCHHHHHHHHH
Confidence 478999997 55699999999753 77888887543 23322222 111 024677899999998775421
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2368888877653
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=53.44 E-value=1.2e+02 Score=34.73 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=67.4
Q ss_pred cccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH-----hh-ccccCCccEEEEEECCCCHHHH
Q 002475 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA-----KL-EFDFMGTSVICRSGSPLILADL 453 (917)
Q Consensus 380 ~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~-----~~-~~~~~~~~V~~i~Gd~~d~e~L 453 (917)
+....++|+|.|+ +--++||.+.. +-..++++|-||+-+|-... .. ...+.+.++.++..|+.+ .
T Consensus 288 ~~a~~vLvlGGGD--GLAlRellkyP----~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---w 358 (508)
T COG4262 288 RGARSVLVLGGGD--GLALRELLKYP----QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---W 358 (508)
T ss_pred cccceEEEEcCCc--hHHHHHHHhCC----CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---H
Confidence 3457899999998 34468887643 24678999999976553321 11 234556788888777654 3
Q ss_pred hccCcccccEEEEecCCCC-CCcchHHHH-HHHHHHhhhcCCCCceEEEEecCC
Q 002475 454 KKVSVSKARAIIVLASDEN-ADQSDARAL-RVVLSLTGVKEGLRGHVVVEMSDL 505 (917)
Q Consensus 454 ~rAgI~~A~aVIilt~d~~-~~~sD~~Ni-~~~Laar~l~p~~~~~IIA~v~d~ 505 (917)
.|-..+.-|.+|+-..|++ +.-.---.. .-.+..+.+++ ....|++..++
T Consensus 359 lr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e--~Gl~VvQags~ 410 (508)
T COG4262 359 LRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE--TGLMVVQAGSP 410 (508)
T ss_pred HHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc--CceEEEecCCC
Confidence 4444558999999887731 110000011 22344455555 34466666554
No 249
>PRK07478 short chain dehydrogenase; Provisional
Probab=53.38 E-value=49 Score=35.18 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=50.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
..++|.|.+. .+..++++|... +..|+++.++++..+...+++.. .+.++.++.+|.++++.++++=
T Consensus 7 k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688888765 578888888753 56788888877766655443211 1235777888888887766531
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124456665553
No 250
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=53.27 E-value=26 Score=38.21 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=49.3
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-----
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 718 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a----- 718 (917)
+|+|.|. |..|..++++|.+. |.+|.++...+.. .. ..+ +..+.||.+|.+.|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~---g~~V~~~~R~~~~--~~-----------~~~--~~~~~~d~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA---SVPFLVASRSSSS--SA-----------GPN--EKHVKFDWLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC---CCcEEEEeCCCcc--cc-----------CCC--CccccccCCCHHHHHHHHhccc
Confidence 4788998 78899999999764 7788888765421 10 122 34578999999999874
Q ss_pred CCCC-ccEEEEecC
Q 002475 719 PLET-FDSILILAD 731 (917)
Q Consensus 719 ~Ie~-adavIilsd 731 (917)
.+.. +|.++.++.
T Consensus 63 ~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 63 GMEPEISAVYLVAP 76 (285)
T ss_pred CcCCceeEEEEeCC
Confidence 2355 888887765
No 251
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=53.18 E-value=30 Score=38.03 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=45.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
+|.|+|.|..|..++..|... ++.|++.+.+++.++..... +.. .-...+.+ .+.+||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~~~~~~a~~~--------g~~--~~~~~~~~-----~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRESTCERAIER--------GLV--DEASTDLS-----LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHC--------CCc--ccccCCHh-----HhcCCCE
Confidence 688999999999999999753 56899999988777765431 110 00111221 2568999
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
||+++..
T Consensus 61 Vilavp~ 67 (279)
T PRK07417 61 VILALPI 67 (279)
T ss_pred EEEcCCH
Confidence 9999853
No 252
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=53.15 E-value=28 Score=43.27 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=51.5
Q ss_pred cccCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 380 IEKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 380 ~~~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
+..++|+|.|.+ -.|..++++|... +++.|+.++++........ ...++.++.||.++.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~-----~g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRD-----DNYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhC-----CCcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 456789999974 4688899998753 2478888877654322211 12357889999998665433234
Q ss_pred ccccEEEEecC
Q 002475 459 SKARAIIVLAS 469 (917)
Q Consensus 459 ~~A~aVIilt~ 469 (917)
++++.||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 57898886554
No 253
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=53.08 E-value=47 Score=35.52 Aligned_cols=71 Identities=23% Similarity=0.180 Sum_probs=44.0
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.++|.|.+. .+..++++|.... ...+..|+++.++++.++...+++.....+.++.++.+|.++++.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~--~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~ 73 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCL--KSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQL 73 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhh--ccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHH
Confidence 478888876 4777888886421 1135778888888777666544321111133567777888887766553
No 254
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.08 E-value=49 Score=34.79 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=50.2
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.+.++|.|. |..+..+++.|.+. +..|++++.+++.++...++.. ..+.++.++.+|.++.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQEKLEEAVAECG--ALGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357899997 55688888888652 4678888888766655443321 1133567788888887766532
Q ss_pred --CcccccEEEEecC
Q 002475 457 --SVSKARAIIVLAS 469 (917)
Q Consensus 457 --gI~~A~aVIilt~ 469 (917)
.....|.+|-++.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1123466666553
No 255
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=53.07 E-value=16 Score=37.18 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=38.8
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e-~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...|.|+|||..+..-...|+.. +..|++..++.. ..+...+. +.. ..+..+| +++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~--------Gf~--------v~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKAD--------GFE--------VMSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHT--------T-E--------CCEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHC--------CCe--------eccHHHH-Hhh
Confidence 46789999999998888888753 567777765433 44443221 221 1244454 778
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
||.|+++++|
T Consensus 61 aDvV~~L~PD 70 (165)
T PF07991_consen 61 ADVVMLLLPD 70 (165)
T ss_dssp -SEEEE-S-H
T ss_pred CCEEEEeCCh
Confidence 9999999964
No 256
>PRK05599 hypothetical protein; Provisional
Probab=52.96 E-value=44 Score=35.64 Aligned_cols=64 Identities=31% Similarity=0.227 Sum_probs=40.5
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.++|.|.+. .|..++++|.+ +..|+++.++++..+...+++. +.....+.++..|.+|++.+++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-------g~~Vil~~r~~~~~~~~~~~l~-~~~~~~~~~~~~Dv~d~~~v~~ 66 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-------GEDVVLAARRPEAAQGLASDLR-QRGATSVHVLSFDAQDLDTHRE 66 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHH-hccCCceEEEEcccCCHHHHHH
Confidence 578999887 57778888752 4678888888777666544321 1111235566777777766554
No 257
>PRK09135 pteridine reductase; Provisional
Probab=52.62 E-value=57 Score=34.19 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=49.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCC-hHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc-
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d-~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI- 458 (917)
..+++|.|.+. .|..++++|... +..|+++++. ++..+.....+ .+.....+.++.+|.++.+.+.++--
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA------GYRVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36799999765 578888888753 5677777653 33333222111 01112347788899999888776421
Q ss_pred -----ccccEEEEecC
Q 002475 459 -----SKARAIIVLAS 469 (917)
Q Consensus 459 -----~~A~aVIilt~ 469 (917)
...+.||-++.
T Consensus 79 ~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 79 CVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24677776664
No 258
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.58 E-value=1.4e+02 Score=31.48 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=53.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..++++...++ ......+. + . .+..+.++.+|.++++.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~~--~~~~~~~~-~---~-~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE---GARVVVADRDAE--AAERVAAA-I---A-AGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC---CCeEEEecCCHH--HHHHHHHH-H---h-cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4689999985 4599999999764 778888875432 22222210 0 0 133467889999999887653
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 75 i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 75 VAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12467888887764
No 259
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=52.52 E-value=34 Score=37.31 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=48.6
Q ss_pred eEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCCh--HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 384 HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~--e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
+|+|.|.+ -.|..++++|...+ ....|++++... ...+. +.... ...++.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~----~~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH----PDAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC----CCCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 47899874 56888999987642 124566666421 11111 11110 123577899999999998876 333
Q ss_pred --ccEEEEecCC
Q 002475 461 --ARAIIVLASD 470 (917)
Q Consensus 461 --A~aVIilt~d 470 (917)
+|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 8888888754
No 260
>COG2985 Predicted permease [General function prediction only]
Probab=52.41 E-value=12 Score=43.84 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=44.0
Q ss_pred CCccCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCccCC
Q 002475 561 WPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (917)
Q Consensus 561 ~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~v~lnP~~d~vI~~GD~LiVIa~~~~~~~~ 621 (917)
.|++.|+.++|+-... .++.+=-++| ++...+|++|++++.||.+-++|.+++..+.
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~ 268 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARL 268 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHH
Confidence 5779999999987643 3344444544 4577899999999999999999999876544
No 261
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=52.40 E-value=66 Score=37.87 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.8
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~ 424 (917)
...++|+|+|..+..++..+... +..|+++|.++.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~ra 248 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPICA 248 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchhh
Confidence 45799999999888888777642 45789999887654
No 262
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=52.30 E-value=17 Score=36.34 Aligned_cols=78 Identities=24% Similarity=0.214 Sum_probs=45.1
Q ss_pred eEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002475 645 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 724 (917)
Q Consensus 645 hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ad 724 (917)
+|.|||.|.-|..++..|... |.+|.+...+ ++..+.+.+.......+++..+. .+..-..+|++ -++.||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~---g~~V~l~~~~--~~~~~~i~~~~~n~~~~~~~~l~---~~i~~t~dl~~-a~~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN---GHEVTLWGRD--EEQIEEINETRQNPKYLPGIKLP---ENIKATTDLEE-ALEDAD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC---TEEEEEETSC--HHHHHHHHHHTSETTTSTTSBEE---TTEEEESSHHH-HHTT-S
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCEEEEEecc--HHHHHHHHHhCCCCCCCCCcccC---cccccccCHHH-HhCccc
Confidence 588999999999999999864 7889998864 35555565543222223333221 11111122333 256788
Q ss_pred EEEEecC
Q 002475 725 SILILAD 731 (917)
Q Consensus 725 avIilsd 731 (917)
.+|+...
T Consensus 72 ~IiiavP 78 (157)
T PF01210_consen 72 IIIIAVP 78 (157)
T ss_dssp EEEE-S-
T ss_pred EEEeccc
Confidence 7777653
No 263
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.24 E-value=1.3e+02 Score=33.53 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=40.7
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
...-++|-|.|. .|..++.|+.+. +..+++.|.+++..++..++... .+ .+.+..-|.++.+++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r------g~~~vl~Din~~~~~etv~~~~~--~g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR------GAKLVLWDINKQGNEETVKEIRK--IG-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh------CCeEEEEeccccchHHHHHHHHh--cC-ceeEEEecCCCHHHHHH
Confidence 455777888887 466777888753 45778888877655544432210 02 35666667777666554
No 264
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=52.23 E-value=45 Score=38.99 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=54.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|+|+.+.-+++.|...+ -..|+++.+..++.+.+..++ + |.+...+.|.. .+.+|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g-----~~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~~-~l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKG-----VKKITIANRTLERAEELAKKL-------G-----AEAVALEELLE-ALAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCC-----CCEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHHH-hhhhC
Confidence 568999999999888899987642 378889999998888776653 1 44555555544 47799
Q ss_pred cEEEEecCCC
Q 002475 462 RAIIVLASDE 471 (917)
Q Consensus 462 ~aVIilt~d~ 471 (917)
|.||..|...
T Consensus 240 DvVissTsa~ 249 (414)
T COG0373 240 DVVISSTSAP 249 (414)
T ss_pred CEEEEecCCC
Confidence 9999998763
No 265
>PRK05876 short chain dehydrogenase; Provisional
Probab=52.16 E-value=52 Score=35.86 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=44.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
..++|.|.+. .+..++++|... +..|++++.+++.++...+++. -.+.++.++..|.++++.++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~~~~l~~~~~~l~--~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARR------GARVVLGDVDKPGLRQAVNHLR--AEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHH
Confidence 4578888765 577888888753 5678888888776665543321 0123567788888888877664
No 266
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=52.08 E-value=52 Score=34.98 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=43.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|.+. +..|++++.+++..+...++... .+.++.++.+|.++++.++++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~------G~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~ 76 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY------GAEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAA 76 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHH
Confidence 34688888765 578888888753 57888998887666554433210 123456677777777766553
No 267
>PRK12828 short chain dehydrogenase; Provisional
Probab=52.03 E-value=46 Score=34.62 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=48.7
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
..++|.|.+ ..+..++++|.+. +..|++++++++..++...+. ....+.++.+|..+.+.++++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAAPLSQTLPGV----PADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChHhHHHHHHHH----hhcCceEEEeecCCHHHHHHHHHHHH
Confidence 467888764 4677888888753 567888888776544433322 1234566778888888776531
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 124566666553
No 268
>PLN02583 cinnamoyl-CoA reductase
Probab=51.90 E-value=61 Score=35.73 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=49.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d--~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
.++++|.|.+. .|..++++|... ++.|+++.++ +......+.... ..+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~------G~~V~~~~R~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR------GYTVHAAVQKNGETEIEKEIRGLS--CEEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEEcCchhhhHHHHHHhcc--cCCCceEEEEecCCCHHHHHHH-H
Confidence 45799999754 578889998753 5677766543 222222222110 0123578899999999988765 4
Q ss_pred ccccEEEEec
Q 002475 459 SKARAIIVLA 468 (917)
Q Consensus 459 ~~A~aVIilt 468 (917)
..+++++-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5677777543
No 269
>PRK07454 short chain dehydrogenase; Provisional
Probab=51.84 E-value=37 Score=35.73 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=51.4
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|. |..|..+++.|.+. |..|++++..+. ..+.+.+. ... .+..+.++.+|.++++.+.++-
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKA---GWDLALVARSQD--ALEALAAE---LRS-TGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHH---HHh-CCCcEEEEEccCCCHHHHHHHHHH
Confidence 367999998 55699999999764 778888876432 22222110 000 1124677899999998765531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 77 ~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2357888877653
No 270
>PRK07774 short chain dehydrogenase; Provisional
Probab=51.82 E-value=55 Score=34.48 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=50.3
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+ ..+..++++|... +..|++++++++..+...+.... .+..+.++.+|.++.+.++++-
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALARE------GASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4578999974 4688888888753 56788888876554443332110 1224567788888888765521
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....|.+|-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 124567776654
No 271
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=51.50 E-value=53 Score=34.75 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=50.1
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc------
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA------ 456 (917)
.++|.|.+. .+..++++|.+. +..|++++.+++..+....... ..+.++.++.+|.++++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKD------GFAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 578898754 578888888753 4677888877655554433221 1134577888999988887664
Q ss_pred CcccccEEEEecC
Q 002475 457 SVSKARAIIVLAS 469 (917)
Q Consensus 457 gI~~A~aVIilt~ 469 (917)
.....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 1124566666553
No 272
>PLN02253 xanthoxin dehydrogenase
Probab=51.18 E-value=56 Score=35.30 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=50.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc---
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI--- 458 (917)
+.++|.|.+. .+..++++|.+. +..|++++.+++..+...+... .+.++.++.+|.++++.++++=-
T Consensus 19 k~~lItGas~gIG~~la~~l~~~------G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKH------GAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHH
Confidence 4688888765 577788888753 5678888877655554433221 12357888999999888766411
Q ss_pred ---ccccEEEEecC
Q 002475 459 ---SKARAIIVLAS 469 (917)
Q Consensus 459 ---~~A~aVIilt~ 469 (917)
.+.|.+|-++.
T Consensus 90 ~~~g~id~li~~Ag 103 (280)
T PLN02253 90 DKFGTLDIMVNNAG 103 (280)
T ss_pred HHhCCCCEEEECCC
Confidence 24666666553
No 273
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.99 E-value=86 Score=33.08 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=52.4
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
++++|.|. |..|..+++.|.+. |.+++++...+. ..+.+.+. + .. .+..+.++.+|.++++.+.++-
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~---g~~v~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE---GAKVVIADLNDE--AAAAAAEA-L--QK-AGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHH--HHHHHHHH-H--Hh-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 68999997 45599999999764 788988876532 22222110 0 00 1234677899999998875531
Q ss_pred ---CCCccEEEEecCC
Q 002475 720 ---LETFDSILILADE 732 (917)
Q Consensus 720 ---Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2467888887754
No 274
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=50.99 E-value=1.3e+02 Score=29.24 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=25.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d 420 (917)
||+|+|.|..+..+++.|.... -..+.++|.|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-----v~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-----VGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEEcCC
Confidence 6899999999999999998753 2457777766
No 275
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=50.86 E-value=53 Score=36.44 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=49.9
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHH---HHHHHHhhccccCCccEEEEEECCCCHHHHhccC
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~---~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
...|+|.|.. -.+..++++|... ++.|+++.++... ++..... .-...++.++.||.++++.+.++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR------GYTVKATVRDLTDRKKTEHLLAL---DGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCCcchHHHHHHHhc---cCCCCceEEEecCCCCcchHHHH-
Confidence 3578899865 4588889998753 4566654444322 2222110 00123578899999999988775
Q ss_pred cccccEEEEecCC
Q 002475 458 VSKARAIIVLASD 470 (917)
Q Consensus 458 I~~A~aVIilt~d 470 (917)
++.++.||-++..
T Consensus 75 ~~~~d~vih~A~~ 87 (322)
T PLN02986 75 IEGCDAVFHTASP 87 (322)
T ss_pred HhCCCEEEEeCCC
Confidence 3458888888764
No 276
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=50.85 E-value=40 Score=38.12 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=54.1
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
.++++|.|. |=.|..+++.|.+. |.+|+.++..+. .....+.+..-.........+.++.||.++.+.|.++ ++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~---g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~-~~ 89 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL---NQTVIGLDNFST-GYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA-CK 89 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeCCCC-cchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-hh
Confidence 468999998 77899999999864 778888875321 1111111000000000112367899999998888765 45
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
++|.||=++..
T Consensus 90 ~~d~ViHlAa~ 100 (348)
T PRK15181 90 NVDYVLHQAAL 100 (348)
T ss_pred CCCEEEECccc
Confidence 78999988764
No 277
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=50.82 E-value=57 Score=36.31 Aligned_cols=66 Identities=23% Similarity=0.121 Sum_probs=42.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.+.++|.|.+. .+..++++|... +..|+++.++++..+...+++. ..+.++.++.+|.++.+.+++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~------G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~ 72 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKR------GWHVIMACRNLKKAEAAAQELG--IPPDSYTIIHIDLGDLDSVRR 72 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhh--ccCCceEEEEecCCCHHHHHH
Confidence 35688888765 578888888753 5678888887766655443321 112345666677766666554
No 278
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=50.74 E-value=21 Score=39.45 Aligned_cols=73 Identities=19% Similarity=0.032 Sum_probs=48.3
Q ss_pred EEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccEE
Q 002475 648 FCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSI 726 (917)
Q Consensus 648 I~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~adav 726 (917)
|.|+ |-.|..++++|.+... -.+|.+++..+.......+. .++. ..++.||.++++.|.++ ++.+|.|
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~~~~-------~~~~--~~~~~~Di~d~~~l~~a-~~g~d~V 70 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLKDLQ-------KSGV--KEYIQGDITDPESLEEA-LEGVDVV 70 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccchhhh-------cccc--eeEEEeccccHHHHHHH-hcCCceE
Confidence 4444 5679999999987521 26788887544322111111 1111 22789999999999997 7889999
Q ss_pred EEecC
Q 002475 727 LILAD 731 (917)
Q Consensus 727 Iilsd 731 (917)
+-++.
T Consensus 71 ~H~Aa 75 (280)
T PF01073_consen 71 FHTAA 75 (280)
T ss_pred EEeCc
Confidence 98875
No 279
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=50.51 E-value=90 Score=32.64 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.5
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d 420 (917)
.+-||+|+|.|..+.++++.|.... -..++++|.|
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G-----Vg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG-----IDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC-----CCEEEEEECC
Confidence 4679999999999999999998753 2456666655
No 280
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=50.29 E-value=61 Score=33.91 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=52.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
.++++|.|.+. .+..+++.|.+. +..|++...+.+.++...... +.++.++.+|.++.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ------GAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45888888655 577788888753 457777777776666544321 23577888999998887764
Q ss_pred --CcccccEEEEecCC
Q 002475 457 --SVSKARAIIVLASD 470 (917)
Q Consensus 457 --gI~~A~aVIilt~d 470 (917)
.....|.+|-++..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12346777766643
No 281
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.05 E-value=51 Score=34.60 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCCh--HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~--~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.++++|.|. |..|..+++.|.+. |..|+++...+. .+....+.. .+..+.++.+|.++++.++++-
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD---GAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHH
Confidence 467999997 45599999999864 778888876432 122222222 1224678899999998876631
Q ss_pred ------CCCccEEEEecCC
Q 002475 720 ------LETFDSILILADE 732 (917)
Q Consensus 720 ------Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 75 ~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 2368888887753
No 282
>PRK07060 short chain dehydrogenase; Provisional
Probab=49.81 E-value=51 Score=34.59 Aligned_cols=76 Identities=17% Similarity=0.036 Sum_probs=50.1
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--c
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I 458 (917)
.+.++|.|.+ ..+..+++.|... ++.|+++.++++..+..... .++.++.+|.++.+.++++- .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHh
Confidence 3578999985 4677888888652 56788888887666544332 13456788999988776641 2
Q ss_pred ccccEEEEecCC
Q 002475 459 SKARAIIVLASD 470 (917)
Q Consensus 459 ~~A~aVIilt~d 470 (917)
...+.+|-....
T Consensus 76 ~~~d~vi~~ag~ 87 (245)
T PRK07060 76 GAFDGLVNCAGI 87 (245)
T ss_pred CCCCEEEECCCC
Confidence 345777766543
No 283
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.80 E-value=37 Score=37.53 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~-Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
++++|.|. |-.|..+++.|.+. |.+|+++...+.. .....+.... . ....+.++.||.++.+.+.++ ++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~~~~~~-~~ 75 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR---GYTVKATVRDPNDPKKTEHLLALD----G-AKERLHLFKANLLEEGSFDSV-VD 75 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC---CCEEEEEEcCCCchhhHHHHHhcc----C-CCCceEEEeccccCcchHHHH-Hc
Confidence 57999997 67799999999864 7778776543221 1111111100 0 012467899999998877765 45
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.+|.||-++..
T Consensus 76 ~~d~Vih~A~~ 86 (322)
T PLN02662 76 GCEGVFHTASP 86 (322)
T ss_pred CCCEEEEeCCc
Confidence 78999998864
No 284
>PRK07814 short chain dehydrogenase; Provisional
Probab=49.78 E-value=58 Score=34.92 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=51.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..+++.|... +..|++++++++..+...+.... .+.++.++.+|.++++.+.++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA------GADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35688888775 577788888752 56788888877666554433211 1345778889999988876531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
..+.+.+|-.+.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 124566665543
No 285
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=49.61 E-value=60 Score=34.14 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=52.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..++++|.+. +..|++++.+.+..+....... . .+.++.++.+|.++.+.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE------GAKVAVFDLNREAAEKVAADIR-A-KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHH-h-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35788888755 578888888753 5678888877765544332211 0 1345788999999998877641
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|..+.
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677777764
No 286
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=49.56 E-value=61 Score=36.11 Aligned_cols=66 Identities=24% Similarity=0.120 Sum_probs=39.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCC-ceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGG-VIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~-~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
+.+++|.|.+. .|..++++|... + ..|+++.++.+..+...+++. ..+..+.++..|.++.+.+++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~------G~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~ 70 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAAT------GEWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQ 70 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHH
Confidence 45789999876 577888888752 5 677888777766554433221 112234455555555555443
No 287
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=49.52 E-value=46 Score=37.62 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=51.1
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc---cccCCccEEEEEECCCCHHHHhccC
Q 002475 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 382 ~~HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~---~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
.++|+|.|. |-.|..++++|... +..|+.++.............. ......++.++.||..+.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL------NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-
Confidence 357999997 55688899999853 4577777653321111111100 000112577899999999888765
Q ss_pred cccccEEEEecCC
Q 002475 458 VSKARAIIVLASD 470 (917)
Q Consensus 458 I~~A~aVIilt~d 470 (917)
+++++.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 3468888888754
No 288
>PLN02650 dihydroflavonol-4-reductase
Probab=49.50 E-value=43 Score=37.79 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~-Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.++|+|.|. |-.|..+++.|.+. |.+|+++...+.. +....+.+. + . ....+.++.||.++.+.+.++ +
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~---~-~-~~~~~~~v~~Dl~d~~~~~~~-~ 75 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER---GYTVRATVRDPANVKKVKHLLDL---P-G-ATTRLTLWKADLAVEGSFDDA-I 75 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC---CCEEEEEEcCcchhHHHHHHHhc---c-C-CCCceEEEEecCCChhhHHHH-H
Confidence 458999998 67799999999764 7788776543211 111111110 0 0 012467889999999888765 5
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
+.+|.||-++..
T Consensus 76 ~~~d~ViH~A~~ 87 (351)
T PLN02650 76 RGCTGVFHVATP 87 (351)
T ss_pred hCCCEEEEeCCC
Confidence 578999988864
No 289
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.32 E-value=1.1e+02 Score=32.53 Aligned_cols=84 Identities=12% Similarity=-0.019 Sum_probs=52.1
Q ss_pred CCCeEEEEcc-c-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 642 YPEKILFCGW-R-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 642 ~~~hilI~Gw-g-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
..+.++|.|. | ..|..+++.|.+. |..|++++..+ ++.+...+. + ...+....+.++.+|.++++.++++-
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~---G~~V~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEE---GARVVISDIHE--RRLGETADE-L-AAELGLGRVEAVVCDVTSEAQVDALI 88 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H-HHhcCCceEEEEEccCCCHHHHHHHH
Confidence 3578999998 4 5899999999764 77788776532 222221110 0 00122234677899999987665421
Q ss_pred ------CCCccEEEEecCC
Q 002475 720 ------LETFDSILILADE 732 (917)
Q Consensus 720 ------Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 89 ~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2367888887763
No 290
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=49.31 E-value=57 Score=36.83 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=54.0
Q ss_pred CCCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
...+++|.|. |-.|..+++.|.+. |..|+++...+ +....+... + ..+..+.++.+|.++.+.++++ +
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~---G~~V~~~~r~~--~~~~~~~~~-~----~~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR---GYTVHATLRDP--AKSLHLLSK-W----KEGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCh--HHHHHHHHh-h----ccCCeEEEEECCCCCHHHHHHH-H
Confidence 3458999997 56799999999764 77888776533 222211110 0 0122467789999999888775 4
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
+..|.||-++..
T Consensus 78 ~~~d~Vih~A~~ 89 (353)
T PLN02896 78 KGCDGVFHVAAS 89 (353)
T ss_pred cCCCEEEECCcc
Confidence 568999998864
No 291
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=49.31 E-value=77 Score=39.94 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhhcC----------CCHHHHHHHHHHhhhccCC--C--CC----c--CCccCeeeeehhhhhh
Q 002475 296 IFLIIFGGLALYAVSD----------SSFAEALWLSWTFVADSGN--H--AD----R--VGTGPRIVSVSISSGG 350 (917)
Q Consensus 296 l~lil~g~~~~~~~e~----------~s~~dAly~~~~tvTTvGy--g--d~----~--~t~~gRi~~v~lil~G 350 (917)
+..+++|.+++...|+ .++++-+|-++..+.|||. | .. + -+..|+++.+++|+.|
T Consensus 710 lw~I~l~~flI~I~E~~~l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 710 LWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred HHHHHHHHHHHHHhcCccccccccccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 4445555556656663 4789999999999999986 3 11 1 2446677666666554
No 292
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.27 E-value=43 Score=36.08 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=51.3
Q ss_pred CCeEEEEccc---cCHHHHHHHHHHhcCCCCeEEEEccC-ChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002475 643 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (917)
Q Consensus 643 ~~hilI~Gwg---~~~~~li~~L~~~~~~g~~i~II~~~-p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 718 (917)
.+.++|.|.+ ..|..+++.|.+. |..++++... ..+++.+.+.+ .+++.++.++..|.+|++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~---G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA---GAKLVFTYAGERLEKEVRELAD------TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC---CCEEEEecCcccchHHHHHHHH------HcCCCceEEEecCCCCHHHHHHH
Confidence 4689999984 7799999999864 7788887532 11233333332 12223466789999999876432
Q ss_pred ------CCCCccEEEEecC
Q 002475 719 ------PLETFDSILILAD 731 (917)
Q Consensus 719 ------~Ie~adavIilsd 731 (917)
.....|.+|-.+.
T Consensus 78 ~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHhCCCccEEEECcc
Confidence 1346787776543
No 293
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=49.25 E-value=56 Score=36.22 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=52.4
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.++++|.|. |-.|..+++.|.+. |.+|+++..++.. +....+...+ ....+.++.||.++++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~- 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR---GYTINATVRDPKDRKKTDHLLALDG------AKERLKLFKADLLDEGSFELA- 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC---CCEEEEEEcCCcchhhHHHHHhccC------CCCceEEEeCCCCCchHHHHH-
Confidence 468999998 56799999999864 7777766433221 1111111100 012467789999999888765
Q ss_pred CCCccEEEEecCC
Q 002475 720 LETFDSILILADE 732 (917)
Q Consensus 720 Ie~adavIilsd~ 732 (917)
++..|.||-++..
T Consensus 75 ~~~~d~vih~A~~ 87 (325)
T PLN02989 75 IDGCETVFHTASP 87 (325)
T ss_pred HcCCCEEEEeCCC
Confidence 4568999998864
No 294
>PRK08589 short chain dehydrogenase; Validated
Probab=49.17 E-value=61 Score=35.08 Aligned_cols=65 Identities=17% Similarity=0.092 Sum_probs=43.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.++++|.|.+. .+..++++|... +..|++++.+ +..+...+++. + .+.++.++.+|.++++.+++
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~------G~~vi~~~r~-~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~~~~ 71 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE------GAYVLAVDIA-EAVSETVDKIK-S-NGGKAKAYHVDISDEQQVKD 71 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCc-HHHHHHHHHHH-h-cCCeEEEEEeecCCHHHHHH
Confidence 35788889865 578888888753 5678888877 45554443321 1 12357788888888877654
No 295
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=49.12 E-value=1.2e+02 Score=30.98 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=56.1
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCC--h---HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--E---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p--~---~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 718 (917)
.++|.|+ |..+..+++.|.+.. ...++++...+ . ++..+.+.+ .+..|.++..|.+|++.++++
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~--------~g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELES--------AGARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHH--------TT-EEEEEE--TTSHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHh--------CCCceeeeccCccCHHHHHHH
Confidence 5788885 567999999998753 46788887651 1 233344443 246788999999999988764
Q ss_pred --CC----CCccEEEEecCCCCcCccccCcHHHHHHHHHHHHh
Q 002475 719 --PL----ETFDSILILADESLEDSIVHSDSRSLATLLLIRDI 755 (917)
Q Consensus 719 --~I----e~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l 755 (917)
.+ ..-+.||=.+....+..-.+.|.+.+..++..|-.
T Consensus 72 ~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~ 114 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVR 114 (181)
T ss_dssp HHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhh
Confidence 22 35567777665322222334455566666665544
No 296
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=49.06 E-value=1.5e+02 Score=31.22 Aligned_cols=80 Identities=15% Similarity=0.024 Sum_probs=51.1
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 718 (917)
+.++|.|.+ ..|..+++.|.+. |..++++...+ ++.+.+.+. + .. .+..+.++.+|.++++.+.++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD---GFAVAVADLNE--ETAKETAKE-I--NQ-AGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 468999974 5599999999764 77888887542 222222110 0 00 123467789999999877653
Q ss_pred --CCCCccEEEEecCC
Q 002475 719 --PLETFDSILILADE 732 (917)
Q Consensus 719 --~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHcCCCCEEEECCCc
Confidence 12357888877754
No 297
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=49.00 E-value=45 Score=41.93 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhhhccCCC-CCcCCccCeeeeehhhhhhHHHHHHHHHHHHHHHHH
Q 002475 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGyg-d~~~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~i~~ 367 (917)
.++..|+|..|..+..---- +.|.++.+|+.+.+|.++++++++.-++-++.++..
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999888766531111 124577899999999999999988777776665544
No 298
>PRK08251 short chain dehydrogenase; Provisional
Probab=48.99 E-value=1.7e+02 Score=30.78 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.+. .|..+++.|.+. |..++++...+. +.+.+.+. + ....++..+.++.+|.++++.+.++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~---g~~v~~~~r~~~--~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAK---GRDLALCARRTD--RLEELKAE-L-LARYPGIKVAVAALDVNDHDQVFEVFAE 74 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHH-H-HhhCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 35789999755 499999999764 678888875432 22222110 0 0012345678899999999876542
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|..+..
T Consensus 75 ~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 75 FRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 23467888887753
No 299
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.80 E-value=31 Score=38.51 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=53.1
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CCCC
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLET 722 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~Ie~ 722 (917)
.|||+|+ |=+|...+.+|.+ .|.+++|+|+...--+.. +......|++||..|++.|.+. .-.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~---~G~~vvV~DNL~~g~~~~-----------v~~~~~~f~~gDi~D~~~L~~vf~~~~ 67 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKIA-----------LLKLQFKFYEGDLLDRALLTAVFEENK 67 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCCHHH-----------hhhccCceEEeccccHHHHHHHHHhcC
Confidence 5889987 6679999999976 489999999753211111 1111146899999999999874 3447
Q ss_pred ccEEEEecCCC
Q 002475 723 FDSILILADES 733 (917)
Q Consensus 723 adavIilsd~~ 733 (917)
.|+||=++...
T Consensus 68 idaViHFAa~~ 78 (329)
T COG1087 68 IDAVVHFAASI 78 (329)
T ss_pred CCEEEECcccc
Confidence 88888877643
No 300
>PRK07677 short chain dehydrogenase; Provisional
Probab=48.69 E-value=63 Score=34.28 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=48.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
..++|.|.+. .+..++++|.+. +..|++++.+++..+...+... . .+.++.++.+|.++++.++++-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE------GANVVITGRTKEKLEEAKLEIE-Q-FPGQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-h-cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888876 577788888752 5678888887766555433221 0 1235778888988888776531
Q ss_pred --cccccEEEEec
Q 002475 458 --VSKARAIIVLA 468 (917)
Q Consensus 458 --I~~A~aVIilt 468 (917)
....+.+|-++
T Consensus 74 ~~~~~id~lI~~a 86 (252)
T PRK07677 74 EKFGRIDALINNA 86 (252)
T ss_pred HHhCCccEEEECC
Confidence 12346666554
No 301
>PRK06101 short chain dehydrogenase; Provisional
Probab=48.61 E-value=37 Score=35.89 Aligned_cols=75 Identities=8% Similarity=-0.043 Sum_probs=49.0
Q ss_pred CeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--C
Q 002475 644 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--L 720 (917)
Q Consensus 644 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--I 720 (917)
+.++|.|.+. .|..++++|.+. |..+++++.. +++.+.+.+. .. .+.++.+|.++++.++++- +
T Consensus 2 ~~vlItGas~giG~~la~~L~~~---G~~V~~~~r~--~~~~~~~~~~------~~--~~~~~~~D~~~~~~~~~~~~~~ 68 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQ---GWQVIACGRN--QSVLDELHTQ------SA--NIFTLAFDVTDHPGTKAALSQL 68 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhC---CCEEEEEECC--HHHHHHHHHh------cC--CCeEEEeeCCCHHHHHHHHHhc
Confidence 4689999854 499999999754 7888888754 3444444331 11 2567899999998776631 1
Q ss_pred -CCccEEEEecC
Q 002475 721 -ETFDSILILAD 731 (917)
Q Consensus 721 -e~adavIilsd 731 (917)
..-|.+|..+.
T Consensus 69 ~~~~d~~i~~ag 80 (240)
T PRK06101 69 PFIPELWIFNAG 80 (240)
T ss_pred ccCCCEEEEcCc
Confidence 12366665554
No 302
>PRK05693 short chain dehydrogenase; Provisional
Probab=48.53 E-value=53 Score=35.44 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=49.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
+.++|.|.+. .|..++++|.. .+..|++++++++..+.... .++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKA------AGYEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 3688998765 57778888864 25778888887766554322 2356788999998877653
Q ss_pred -CcccccEEEEecC
Q 002475 457 -SVSKARAIIVLAS 469 (917)
Q Consensus 457 -gI~~A~aVIilt~ 469 (917)
.....|.+|-.+.
T Consensus 68 ~~~~~id~vi~~ag 81 (274)
T PRK05693 68 AEHGGLDVLINNAG 81 (274)
T ss_pred HhcCCCCEEEECCC
Confidence 1235677777665
No 303
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=48.44 E-value=56 Score=34.44 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc------
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA------ 456 (917)
.++|.|.+. .+..++++|.+. +..|++++++++..+....... ..+.++.++.+|..+.+.++.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAA------GANVVVNDLGEAGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 588888654 578888888752 5678888887766555433221 1134578889999998865432
Q ss_pred CcccccEEEEecC
Q 002475 457 SVSKARAIIVLAS 469 (917)
Q Consensus 457 gI~~A~aVIilt~ 469 (917)
.....+.+|-...
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1234566666553
No 304
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=47.93 E-value=1.5e+02 Score=33.27 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=29.6
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCCh
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~ 680 (917)
..+-++|||||+.|.--++.|..+ |..|.|-+-+|.
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLkg~---g~~VivTEiDPI 248 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALKGF---GARVIVTEIDPI 248 (434)
T ss_pred cccEEEEeccCccchhHHHHHhhc---CcEEEEeccCch
Confidence 467899999999999999999865 677777776664
No 305
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=47.85 E-value=1.6e+02 Score=32.32 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=29.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~ 427 (917)
++|.|+|.|..+..++..|.+. ++.|+++++ ++.++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PKRAKAL 38 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HHHHHHH
Confidence 3699999999999999998753 578888887 6555544
No 306
>PRK07775 short chain dehydrogenase; Provisional
Probab=47.54 E-value=65 Score=34.86 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=51.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
+++++|.|.+. .+..++++|... |..|+++..+++..+....+.. ..+.++.++.+|.++++.+.++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA------GFPVALGARRVEKCEELVDKIR--ADGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45899998754 588889999753 4567777766655444332211 0123577888999999988653
Q ss_pred --CcccccEEEEecCC
Q 002475 457 --SVSKARAIIVLASD 470 (917)
Q Consensus 457 --gI~~A~aVIilt~d 470 (917)
.....+.+|-++..
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 82 EEALGEIEVLVSGAGD 97 (274)
T ss_pred HHhcCCCCEEEECCCc
Confidence 12345777766643
No 307
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=47.51 E-value=62 Score=34.92 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=51.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..++++|... +..|++++.+++..+...+++. . .+.++.++.+|.++++.+..+-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA------GAKVAILDRNQEKAEAVVAEIK-A-AGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-h-cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35678888754 578888888752 5678888887766555443321 1 1335778889999888766531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 235666666554
No 308
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.45 E-value=56 Score=34.67 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=52.6
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCCh--HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~--~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.+.++|.|. |..|..+++.|.+. |..++++...+. ++..+.+.+ .+..+.++.+|.++.+.++++-
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA---GAAVAIADLNQDGANAVADEINK--------AGGKAIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHHHHh--------cCceEEEEECCCCCHHHHHHHH
Confidence 468999998 45599999999764 778888876442 122222222 1234677899999998876531
Q ss_pred ------CCCccEEEEecCC
Q 002475 720 ------LETFDSILILADE 732 (917)
Q Consensus 720 ------Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 76 ~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 2347888877754
No 309
>PRK06057 short chain dehydrogenase; Provisional
Probab=47.45 E-value=51 Score=35.09 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=40.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
++++|.|.+. .+..++++|.+. +..|++++.+++..+...++. ...++.+|.++++.+++
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 68 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNA 68 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHH
Confidence 5788999865 578888888753 577888888776655443321 11356778888777654
No 310
>PRK08263 short chain dehydrogenase; Provisional
Probab=47.24 E-value=64 Score=34.86 Aligned_cols=77 Identities=16% Similarity=0.020 Sum_probs=51.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA----- 456 (917)
+.++|.|.+. .+..++++|.+. +..|++++++++..+...+.. +..+.++.+|.++++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALER------GDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 3578888665 577788888642 567888888877766544321 23577889999999887653
Q ss_pred -CcccccEEEEecCC
Q 002475 457 -SVSKARAIIVLASD 470 (917)
Q Consensus 457 -gI~~A~aVIilt~d 470 (917)
.....+.+|-++..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 73 EHFGRLDIVVNNAGY 87 (275)
T ss_pred HHcCCCCEEEECCCC
Confidence 11345777777654
No 311
>PRK07035 short chain dehydrogenase; Provisional
Probab=47.11 E-value=72 Score=33.78 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=41.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.+.++|.|.+. .+..++++|.+. +..|++++.+++..+...+++. + .+..+.++..|..+.+.+++
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQ------GAHVIVSSRKLDGCQAVADAIV-A-AGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-h-cCCeEEEEEcCCCCHHHHHH
Confidence 35688888776 478888888753 5678888887766655443321 0 12245566777777766543
No 312
>PRK07904 short chain dehydrogenase; Provisional
Probab=47.00 E-value=45 Score=35.81 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=50.9
Q ss_pred CCCCeEEEEccccC-HHHHHHHHHHhcCCCCeEEEEccCChH---HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHh
Q 002475 641 KYPEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 641 ~~~~hilI~Gwg~~-~~~li~~L~~~~~~g~~i~II~~~p~~---Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~ 716 (917)
...++++|.|.++. |..++++|.+. .|..|+++...++. +..+.+.+ ..+..+.++.+|.++++.++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMKA-------AGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHHh-------cCCCceEEEEecCCChHHHH
Confidence 35678999999654 99999998764 24778888654322 11222222 11224778899999877543
Q ss_pred cC-----CCCCccEEEEecC
Q 002475 717 SL-----PLETFDSILILAD 731 (917)
Q Consensus 717 ~a-----~Ie~adavIilsd 731 (917)
++ .-...|.+|..+.
T Consensus 77 ~~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHHhcCCCCEEEEeee
Confidence 21 1136887776554
No 313
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.97 E-value=42 Score=36.43 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=50.4
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|. |..|..+++.|.+. |..|++++..+ +..+.+.+. .+.++.+|.++++.++++-
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~---G~~Vi~~~r~~--~~~~~l~~~----------~~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD---GWRVFATCRKE--EDVAALEAE----------GLEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHC----------CceEEEccCCCHHHHHHHHHH
Confidence 468999999 55699999999764 78888887543 333444331 2456899999988665431
Q ss_pred C-----CCccEEEEecC
Q 002475 720 L-----ETFDSILILAD 731 (917)
Q Consensus 720 I-----e~adavIilsd 731 (917)
+ ...|.+|-.+.
T Consensus 69 ~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 69 VLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHcCCCccEEEECCC
Confidence 1 35688877664
No 314
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=46.94 E-value=1.3e+02 Score=32.01 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|... .|..+++.|.+. |..+++++....++..+.+.+. +..+.++++|.++++.++++=
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~---G~~vv~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEA---GCDIVGINIVEPTETIEQVTAL--------GRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEecCcchHHHHHHHHhc--------CCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999865 599999999764 7888887654333333434321 224677899999987665421
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 79 ~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 79 AVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2357877776653
No 315
>PRK06483 dihydromonapterin reductase; Provisional
Probab=46.86 E-value=52 Score=34.53 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=38.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.+.++|.|.+. .+..++++|... +..|++++++++.....+.. .++.++.+|.++++.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ------GQPVIVSYRTHYPAIDGLRQ-------AGAQCIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCchhHHHHHHH-------cCCEEEEcCCCCHHHHHH
Confidence 35788998876 578888888752 56777887765433222221 135567778877776654
No 316
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.86 E-value=1.5e+02 Score=33.40 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc--cccCC-ccEEEEEECCCCHHHHhccCccc
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE--FDFMG-TSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~--~~~~~-~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
+|.|+|.|..+..++..|...+ -...++|+|.+++..+....++. ..+.. .++.+..| +.++ +.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~----~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~-----~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG----LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD-----CAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH-----hCC
Confidence 4789999998888887776421 23578899987654433332221 11221 23433333 3444 457
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
||.||+.+..
T Consensus 69 aDivvitaG~ 78 (307)
T cd05290 69 ADIIVITAGP 78 (307)
T ss_pred CCEEEECCCC
Confidence 8889988876
No 317
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=46.85 E-value=1.1e+02 Score=32.21 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=51.2
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+. .|..+++.|.+. |..+++......+...+...+. .. .+.++.+++.|.++++.+.++-
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~---g~~v~~~~~~~~~~~~~~~~~l----~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE---GAKVVINYNSSKEAAENLVNEL----GK-EGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEcCCcHHHHHHHHHHH----Hh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 47899999855 499999999864 7777765432222221111110 00 1234778999999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2347888887764
No 318
>PRK03612 spermidine synthase; Provisional
Probab=46.81 E-value=79 Score=38.27 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC-C---CccCcCCceEEEEEcCcCCHhHHh
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-L---DISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~g-l---~~~~l~~~~v~~i~GD~t~~~~L~ 716 (917)
+.+++++++|.|.-+ +++++.++ ++..+++++|-++ +..+...++. + ....+.+.++.+++||+. +.++
T Consensus 296 ~~~~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLR 368 (521)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHH
Confidence 346799999998653 44555544 2226899999753 5555554421 1 011233456788999975 4455
Q ss_pred cCCCCCccEEEEec
Q 002475 717 SLPLETFDSILILA 730 (917)
Q Consensus 717 ~a~Ie~adavIils 730 (917)
+. -+++|.|++-.
T Consensus 369 ~~-~~~fDvIi~D~ 381 (521)
T PRK03612 369 KL-AEKFDVIIVDL 381 (521)
T ss_pred hC-CCCCCEEEEeC
Confidence 43 36999988854
No 319
>PLN02494 adenosylhomocysteinase
Probab=46.52 E-value=81 Score=37.60 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=28.9
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~ 424 (917)
...++|+|+|..|..+++.+... +..|++++.++.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPICA 290 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhh
Confidence 56899999999888888887532 46788899887653
No 320
>PRK05326 potassium/proton antiporter; Reviewed
Probab=46.51 E-value=21 Score=43.44 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=33.1
Q ss_pred CccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002475 863 EISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 863 ~ltf~~l~~~~r~~g~ivIG~~~~~g~~~iiNP~~k~~~~~l~~gD~LIVi~~~ 916 (917)
+.+..|+. ..++..++++.|++ + .++|++ ++++++||++++++.+
T Consensus 429 G~~l~el~---lp~~~~i~~v~R~g--~-~~~p~~---~t~L~~GD~l~l~~~~ 473 (562)
T PRK05326 429 GKALRDLR---LPRGALIALIIRDG--K-LLVPTG---STRLKAGDVLLVLGPE 473 (562)
T ss_pred CCCHHHcC---CCCCcEEEEEEECC--E-EeCCCC---CCeECCCCEEEEEECH
Confidence 34445552 24689999998854 3 467876 8999999999999864
No 321
>PRK05872 short chain dehydrogenase; Provisional
Probab=46.41 E-value=73 Score=35.06 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=43.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|... |..|++++.+++.++...++.. .+..+.++..|.++++.++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR------GAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHH
Confidence 35788888765 577788888652 5678888888877666544321 123455666788887776553
No 322
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=46.40 E-value=50 Score=29.60 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=48.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+|-|+|.|+.+..+++.|..... ..+.|.++ +++++..++..+++ .+.+... ++.+.++ +||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~--~~~~~~~-----~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSPEKAAELAKEY-------GVQATAD--DNEEAAQ-----EAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSHHHHHHHHHHC-------TTEEESE--EHHHHHH-----HTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcHHHHHHHHHhh-------ccccccC--ChHHhhc-----cCC
Confidence 46788999999999999987531 22566655 99998887765542 1222211 2333333 788
Q ss_pred EEEEecCCCCCCcchHHHHHHHH
Q 002475 463 AIIVLASDENADQSDARALRVVL 485 (917)
Q Consensus 463 aVIilt~d~~~~~sD~~Ni~~~L 485 (917)
.||+.... .+...+...+
T Consensus 64 vvilav~p-----~~~~~v~~~i 81 (96)
T PF03807_consen 64 VVILAVKP-----QQLPEVLSEI 81 (96)
T ss_dssp EEEE-S-G-----GGHHHHHHHH
T ss_pred EEEEEECH-----HHHHHHHHHH
Confidence 89988864 3555544444
No 323
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=46.36 E-value=41 Score=39.81 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChH
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK 681 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~ 681 (917)
.++|+|+|+|+.|..+++.|.+. |..+++.|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCc
Confidence 67999999999999999999875 7889999976654
No 324
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=46.21 E-value=40 Score=32.99 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=46.2
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..++++|+|.|..+..+++.|.+.. +..+++++..+ ++.+.+.+. +.. ..+..+.++.+ ++ ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~--~~~~~~~~~------~~~---~~~~~~~~~~~---~~-~~ 80 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTL--EKAKALAER------FGE---LGIAIAYLDLE---EL-LA 80 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCH--HHHHHHHHH------Hhh---cccceeecchh---hc-cc
Confidence 3578999999999999999997641 36788887643 444444331 111 00111223322 22 78
Q ss_pred CccEEEEecCCC
Q 002475 722 TFDSILILADES 733 (917)
Q Consensus 722 ~adavIilsd~~ 733 (917)
++|.||..+..+
T Consensus 81 ~~Dvvi~~~~~~ 92 (155)
T cd01065 81 EADLIINTTPVG 92 (155)
T ss_pred cCCEEEeCcCCC
Confidence 999999988654
No 325
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=46.05 E-value=84 Score=36.39 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=52.0
Q ss_pred CCCCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHH----HHHhhcCCCCccCcCCceEEEEEcCcCCHhHH
Q 002475 641 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER----EKKLTDGGLDISGLMNIKLVHREGNAVIRRHL 715 (917)
Q Consensus 641 ~~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er----~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L 715 (917)
....+++|.|. |..|..++++|.+. |.+|+++...+..-. ...+.+ ..++ +.++.||.+|.+.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~---G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~--v~~v~~Dl~d~~~l 126 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR---GYNVVAVAREKSGIRGKNGKEDTKK------ELPG--AEVVFGDVTDADSL 126 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEEechhhccccchhhHHhh------hcCC--ceEEEeeCCCHHHH
Confidence 34558999998 66799999999764 788888875432100 000100 1123 56789999999998
Q ss_pred hcCCCC---CccEEEEecC
Q 002475 716 ESLPLE---TFDSILILAD 731 (917)
Q Consensus 716 ~~a~Ie---~adavIilsd 731 (917)
.++--. .+|.||..+.
T Consensus 127 ~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 127 RKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHHhCCCCcEEEECCc
Confidence 775222 6898886543
No 326
>PRK08643 acetoin reductase; Validated
Probab=46.04 E-value=1.5e+02 Score=31.42 Aligned_cols=81 Identities=12% Similarity=0.022 Sum_probs=51.6
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+. .|..+++.|.+. |..+++++..+ ++.+.+... ... .+..+.++.+|.++++.++++-
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVED---GFKVAIVDYNE--ETAQAAADK---LSK-DGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH---HHh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 35789999865 499999999764 78888887543 222222210 000 1234667899999998765421
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2467888887753
No 327
>PLN02823 spermine synthase
Probab=45.99 E-value=60 Score=36.99 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=50.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcc---ccCCccEEEEEECCCCHHHHhccCc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---DFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~---~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
..+|+|+|.|. +.+++++.... ....|+++|.|++.++...+.+.. .+.+.++.++.||+.+. |++. -
T Consensus 104 pk~VLiiGgG~--G~~~re~l~~~----~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~--L~~~-~ 174 (336)
T PLN02823 104 PKTVFIMGGGE--GSTAREVLRHK----TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE--LEKR-D 174 (336)
T ss_pred CCEEEEECCCc--hHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH--HhhC-C
Confidence 46899999995 45567766421 235789999999877754332211 12345788888887653 3332 3
Q ss_pred ccccEEEEecCC
Q 002475 459 SKARAIIVLASD 470 (917)
Q Consensus 459 ~~A~aVIilt~d 470 (917)
++.|.||+-..+
T Consensus 175 ~~yDvIi~D~~d 186 (336)
T PLN02823 175 EKFDVIIGDLAD 186 (336)
T ss_pred CCccEEEecCCC
Confidence 567777776543
No 328
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=45.91 E-value=21 Score=42.82 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCc-CCccCeeeeehhhhhhHHHHHHHHHHHHHH
Q 002475 312 SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDA 364 (917)
Q Consensus 312 ~s~~dAly~~~~tvTTvGygd~~-~t~~gRi~~v~lil~Gi~i~a~~ig~i~~~ 364 (917)
.++..|.||+|-.+...|-|+.+ -+.-.|+++++|.=+.|++++...+-++..
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 68999999999999999999874 677789988888777777766655555544
No 329
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=45.71 E-value=74 Score=37.26 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=28.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~ 424 (917)
...++|+|+|..+..++..+... +..|+++|.|+.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIRA 231 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhhH
Confidence 45899999999888888777532 56788899888653
No 330
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.62 E-value=1.1e+02 Score=34.55 Aligned_cols=67 Identities=22% Similarity=0.155 Sum_probs=44.3
Q ss_pred ccCeEEEEeccch-HHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHH
Q 002475 381 EKNHILILGWSDK-LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (917)
Q Consensus 381 ~~~HIII~G~g~~-~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L 453 (917)
...|++|.|..+- +..++.++.. +++.|.++-++.+.++.+.+.+.......+|.+..+|..+.+.-
T Consensus 32 ~~~hi~itggS~glgl~la~e~~~------~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v 99 (331)
T KOG1210|consen 32 PRRHILITGGSSGLGLALALECKR------EGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSV 99 (331)
T ss_pred ccceEEEecCcchhhHHHHHHHHH------ccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHH
Confidence 3489999998873 5555666654 37889999888877777655443322333466777777555443
No 331
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.48 E-value=68 Score=34.29 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=38.0
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g---~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.++++|.|.+ ..+..++++|.+. |..|+++.++. +.+..+.+. ....+.++..|.++++..++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~~-~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~ 72 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQND-RMKKSLQKL----VDEEDLLVECDVASDESIER 72 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCch-HHHHHHHhh----ccCceeEEeCCCCCHHHHHH
Confidence 3568888986 5789999999753 56788887763 333332221 11234556666666655544
No 332
>PRK12939 short chain dehydrogenase; Provisional
Probab=45.36 E-value=1.3e+02 Score=31.50 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|. |..|..+++.|.+. |..+++++..+ +....+.+. ... .+..+.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA---GATVAFNDGLA--AEARELAAA---LEA-AGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH---HHh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 478999998 56699999999764 77888886543 222222110 000 1234677899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2468888887754
No 333
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=45.31 E-value=27 Score=30.49 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=25.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
+++|+|.|..+..++..|... +..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999764 46777776543
No 334
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=45.16 E-value=67 Score=36.77 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=54.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC----CCccCcCCceEEEEEcCcCCHhHH
Q 002475 640 PKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG----LDISGLMNIKLVHREGNAVIRRHL 715 (917)
Q Consensus 640 ~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~g----l~~~~l~~~~v~~i~GD~t~~~~L 715 (917)
.+.-++++|+|+|+. ..+++|.++ +.--+|+.+|-+| +..+....+. +....+.+.++.++..|+- .-|
T Consensus 287 ~~~a~~vLvlGGGDG--LAlRellky-P~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wl 359 (508)
T COG4262 287 VRGARSVLVLGGGDG--LALRELLKY-PQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWL 359 (508)
T ss_pred ccccceEEEEcCCch--HHHHHHHhC-CCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHH
Confidence 366789999999876 356777776 2236799999766 3333322111 1123567778888888864 356
Q ss_pred hcCCCCCccEEEEecCC
Q 002475 716 ESLPLETFDSILILADE 732 (917)
Q Consensus 716 ~~a~Ie~adavIilsd~ 732 (917)
+.+.. .+|.+|+--.|
T Consensus 360 r~a~~-~fD~vIVDl~D 375 (508)
T COG4262 360 RTAAD-MFDVVIVDLPD 375 (508)
T ss_pred Hhhcc-cccEEEEeCCC
Confidence 66544 99999996543
No 335
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=45.15 E-value=83 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002475 160 YYMLIINCILCVCYAIHLRDRVEKLEEENS 189 (917)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (917)
..+|+++|.++|.+-+-|-+||..|+....
T Consensus 137 IAVLfLICT~LfLSTVVLANKVS~LKrskQ 166 (227)
T PF05399_consen 137 IAVLFLICTLLFLSTVVLANKVSSLKRSKQ 166 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777789999999987664
No 336
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.97 E-value=2e+02 Score=30.58 Aligned_cols=81 Identities=11% Similarity=0.109 Sum_probs=52.7
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.+.++|.|.++ .|..+++.|.+. |..|+++...++. +..+.+.+ ..++.++.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA---GASVAICGRDEERLASAEARLRE------KFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHh------hCCCceEEEEEecCCCHHHHHHHH
Confidence 46899999865 599999999764 7788888754321 11112221 12334577889999999877542
Q ss_pred -----CCCCccEEEEecCC
Q 002475 719 -----PLETFDSILILADE 732 (917)
Q Consensus 719 -----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 79 ~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 23467888877653
No 337
>PRK06949 short chain dehydrogenase; Provisional
Probab=44.78 E-value=1e+02 Score=32.56 Aligned_cols=81 Identities=14% Similarity=0.028 Sum_probs=52.5
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|. |..|..+++.|.+. |..|+++...+ ++.+.+.+. + .. .+.++.++.+|.++++.++++-
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~---G~~Vi~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA---GAKVVLASRRV--ERLKELRAE-I--EA-EGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 478999998 55699999999764 77888877543 333322220 0 00 1224677899999988776532
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 80 ~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 80 AETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2357888887764
No 338
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=44.59 E-value=46 Score=34.20 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=31.5
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~ 429 (917)
+|-|+|.|..|..++..+... |..|++.|.+++.++...+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~l~~~~~ 40 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEALERARK 40 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHHHHhhhh
Confidence 588999999999999888753 6899999999987776544
No 339
>PRK08862 short chain dehydrogenase; Provisional
Probab=44.50 E-value=80 Score=33.38 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=30.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~ 429 (917)
..++|.|.+. .+..++++|.+. +..|+++.++++.++...+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARL------GATLILCDQDQSALKDTYE 47 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHH
Confidence 5788899887 577888888753 5678888888877665543
No 340
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.27 E-value=83 Score=33.55 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=49.0
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--Ccc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SVS 459 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--gI~ 459 (917)
+.++|.|.+. .+..++++|... +..|++++.+++..+...+++. ...+.++.++..|.++++.++++ ...
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAE------GCHLHLVARDADALEALAADLR-AAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-hhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 5678888754 577888888753 5678888887766555433221 01133567788888888776553 123
Q ss_pred cccEEEEec
Q 002475 460 KARAIIVLA 468 (917)
Q Consensus 460 ~A~aVIilt 468 (917)
..+.+|...
T Consensus 81 ~id~lv~~a 89 (259)
T PRK06125 81 DIDILVNNA 89 (259)
T ss_pred CCCEEEECC
Confidence 455555544
No 341
>PRK08017 oxidoreductase; Provisional
Probab=44.26 E-value=44 Score=35.41 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=47.8
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--CC
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 720 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~I 720 (917)
+.++|.|. |..|..+++.|.+. |..++++...+ ++.+.+.+. .+.++.+|.++.+.++.+ .+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~---g~~v~~~~r~~--~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR---GYRVLAACRKP--DDVARMNSL----------GFTGILLDLDDPESVERAADEV 67 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHhHHHHhC----------CCeEEEeecCCHHHHHHHHHHH
Confidence 57999999 77899999999754 77888877543 333333221 245678999998766541 11
Q ss_pred -----CCccEEEEecC
Q 002475 721 -----ETFDSILILAD 731 (917)
Q Consensus 721 -----e~adavIilsd 731 (917)
...|.++-.+.
T Consensus 68 ~~~~~~~~~~ii~~ag 83 (256)
T PRK08017 68 IALTDNRLYGLFNNAG 83 (256)
T ss_pred HHhcCCCCeEEEECCC
Confidence 34566665554
No 342
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=44.19 E-value=87 Score=35.02 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=50.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHH-HHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~-~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
-.-+||||||+++..-+..|.. .+..|++.|.||-. +....+ +..| -+|++| +.+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg------~g~~VivTEiDPI~ALQAaMe-------G~~V----------~tm~ea-~~e 269 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKG------FGARVIVTEIDPICALQAAME-------GYEV----------TTLEEA-IRE 269 (434)
T ss_pred ccEEEEeccCccchhHHHHHhh------cCcEEEEeccCchHHHHHHhh-------ccEe----------eeHHHh-hhc
Confidence 3467899999998887777753 46899999998843 332222 2222 245554 567
Q ss_pred ccEEEEecCCCCCCcchHHHHHHHHHHhhhc
Q 002475 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (917)
Q Consensus 461 A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~ 491 (917)
++.++..+.. .++..---.+++.
T Consensus 270 ~difVTtTGc--------~dii~~~H~~~mk 292 (434)
T KOG1370|consen 270 VDIFVTTTGC--------KDIITGEHFDQMK 292 (434)
T ss_pred CCEEEEccCC--------cchhhHHHHHhCc
Confidence 8888888864 4455555555554
No 343
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.12 E-value=2.3e+02 Score=34.48 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=48.0
Q ss_pred ccccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 379 ~~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
...+..++|+|.|+.+..+++++....+ ..+|-++|.|+...... . .++.+ .|.-.-.+.+++-++
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~----~~pV~fiDdd~~~~g~~-------i--~Gv~V-~g~~~i~~~v~~~~~ 178 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPE----YTPVAFLDDDPDLTGMK-------I--RGVPV-LGRIEIERVVEELGI 178 (588)
T ss_pred ccCCCceEEEcCchHHHHHHHHHHhCCC----cceEEEECCChhhcCCE-------E--eceee-echhHHHHHHHHcCC
Confidence 3456789999999999999999986543 57888899888542211 1 23443 343335666666666
Q ss_pred ccccEEEEecC
Q 002475 459 SKARAIIVLAS 469 (917)
Q Consensus 459 ~~A~aVIilt~ 469 (917)
+ -+++..+
T Consensus 179 ~---~iiiAip 186 (588)
T COG1086 179 Q---LILIAIP 186 (588)
T ss_pred c---eEEEecC
Confidence 5 4444443
No 344
>PRK06172 short chain dehydrogenase; Provisional
Probab=44.04 E-value=70 Score=33.89 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=51.6
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.++++|.|.+ ..|..+++.|.+. |.++++++..+++ +..+.+.+ .+.++.++.+|.++++.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE---GAKVVVADRDAAGGEETVALIRE--------AGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHh--------cCCceEEEEcCCCCHHHHHHHH
Confidence 4689999985 5599999999764 7788888764321 11122221 123467889999999877653
Q ss_pred -----CCCCccEEEEecCC
Q 002475 719 -----PLETFDSILILADE 732 (917)
Q Consensus 719 -----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 76 ~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 76 EQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 11355888877653
No 345
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=43.97 E-value=85 Score=33.29 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=51.5
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.++++|.|.+. .|..+++.|.+. |..+++++..++. +..+.+.+ .+..+.++.+|.++++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA---GAHVLVNGRNAATLEAAVAALRA--------AGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHh--------cCCceEEEEccCCCHHHHHHHH
Confidence 56888888854 599999999764 7889998865321 11222221 122367889999999877542
Q ss_pred -----CCCCccEEEEecCC
Q 002475 719 -----PLETFDSILILADE 732 (917)
Q Consensus 719 -----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 80 ~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 12456888876653
No 346
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=43.96 E-value=63 Score=35.04 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=48.6
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC-CCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~-gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.+++|||+|+|.-+ +++++.++ .+..+++++|-+| +-.+...+. +.....+.+.++.++.+|+. ..|++..-
T Consensus 76 ~p~~VLiiGgG~G~--~~~ell~~-~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGG--TARELLKH-PPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQE 148 (246)
T ss_dssp ST-EEEEEESTTSH--HHHHHTTS-TT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSS
T ss_pred CcCceEEEcCCChh--hhhhhhhc-CCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccC
Confidence 68999999988764 35666554 2346899998754 222222110 00001134556788999973 45666544
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
+++|.||+-..+
T Consensus 149 ~~yDvIi~D~~d 160 (246)
T PF01564_consen 149 EKYDVIIVDLTD 160 (246)
T ss_dssp T-EEEEEEESSS
T ss_pred CcccEEEEeCCC
Confidence 499999986654
No 347
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.92 E-value=1.3e+02 Score=36.45 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=63.1
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc-Ccc
Q 002475 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV-SVS 459 (917)
Q Consensus 382 ~~HIII~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA-gI~ 459 (917)
...|+|.|.| ..|.++++|+...+ ...+++.+.|+-....+..++...+...++.++.||..|.+-++++ .-.
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~-----p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFN-----PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcC-----CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 3456666655 57999999998754 4677888888755444433332223346788999999999999986 222
Q ss_pred cccEEEEecCC-C------CCCcchHHHHHHHHH
Q 002475 460 KARAIIVLASD-E------NADQSDARALRVVLS 486 (917)
Q Consensus 460 ~A~aVIilt~d-~------~~~~sD~~Ni~~~La 486 (917)
+-|.|+=.+.- + ++.+.=..|+.-+..
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~n 358 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTEN 358 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHH
Confidence 46766655443 1 344444456654443
No 348
>PRK07060 short chain dehydrogenase; Provisional
Probab=43.90 E-value=1.2e+02 Score=31.61 Aligned_cols=76 Identities=11% Similarity=0.006 Sum_probs=51.3
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|. |..|..+++.|.+. |.+++++...+ +..+.+.+. + + ..++.+|.++.+.++++-
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~---g~~V~~~~r~~--~~~~~~~~~------~-~--~~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR---GARVVAAARNA--AALDRLAGE------T-G--CEPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH------h-C--CeEEEecCCCHHHHHHHHHH
Confidence 468999998 56799999999764 77888887543 333333321 1 1 346789999988765531
Q ss_pred CCCccEEEEecCC
Q 002475 720 LETFDSILILADE 732 (917)
Q Consensus 720 Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 75 ~~~~d~vi~~ag~ 87 (245)
T PRK07060 75 AGAFDGLVNCAGI 87 (245)
T ss_pred hCCCCEEEECCCC
Confidence 3457888887754
No 349
>PRK06482 short chain dehydrogenase; Provisional
Probab=43.88 E-value=1.7e+02 Score=31.36 Aligned_cols=77 Identities=13% Similarity=-0.011 Sum_probs=52.6
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 718 (917)
++++|.|.+ ..|..+++.|.+. |..+.++... +++.+.+.+. .+ ..+.++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~---g~~v~~~~r~--~~~~~~~~~~------~~-~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR---GDRVAATVRR--PDALDDLKAR------YG-DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCC--HHHHHHHHHh------cc-CceEEEEccCCCHHHHHHHHHHH
Confidence 579999984 5699999999764 7788887754 2344444321 11 2356789999999877653
Q ss_pred --CCCCccEEEEecCC
Q 002475 719 --PLETFDSILILADE 732 (917)
Q Consensus 719 --~Ie~adavIilsd~ 732 (917)
.....|.+|-++..
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHcCCCCEEEECCCC
Confidence 23467888888764
No 350
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.83 E-value=75 Score=33.45 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--c
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVL-id~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I 458 (917)
.+++|.|.+. .+..+++.|.+. +..|++ ..++.+..+...++.. ..+.++.++.+|.++++.++++= +
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE------GYDIAVNYARSRKAAEETAEEIE--ALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5789998765 578888888753 445554 4566555544433221 11346788899999999876641 1
Q ss_pred ----ccccEEEEecCC
Q 002475 459 ----SKARAIIVLASD 470 (917)
Q Consensus 459 ----~~A~aVIilt~d 470 (917)
...|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 246777776643
No 351
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.81 E-value=1.4e+02 Score=31.11 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=51.9
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+ ..|..+++.|.+. |..++++...+.+ ..+.+.+. + .-.+.++.++.+|.++.+.+.++-
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~---G~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ---GANVVINYASSEA-GAEALVAE-I---GALGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCchh-HHHHHHHH-H---HhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3589999985 4599999999764 7788777654332 22221110 0 001235678899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 77 AKAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2357888887754
No 352
>PRK06953 short chain dehydrogenase; Provisional
Probab=43.79 E-value=1.2e+02 Score=31.62 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=47.9
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--Cc--
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV-- 458 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--gI-- 458 (917)
.++|.|.+. .+..++++|... +..|++++.+++..+.... .++.++.+|.++.+.++++ .+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~------G~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRAD------GWRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhC------CCEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcC
Confidence 577888654 577888888642 5678888887766554321 2356788999999888774 12
Q ss_pred ccccEEEEecC
Q 002475 459 SKARAIIVLAS 469 (917)
Q Consensus 459 ~~A~aVIilt~ 469 (917)
...+.+|-++.
T Consensus 69 ~~~d~vi~~ag 79 (222)
T PRK06953 69 EALDAAVYVAG 79 (222)
T ss_pred CCCCEEEECCC
Confidence 23566666553
No 353
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=43.74 E-value=69 Score=36.65 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHH-HHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~-~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
-..+||||||..+.-++..+.. .|..|+|.|.||-. ++...+ ++.+. .+.+| +..
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg------~GA~ViVtEvDPI~AleA~Md---------Gf~V~--------~m~~A-a~~ 264 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRG------MGARVIVTEVDPIRALEAAMD---------GFRVM--------TMEEA-AKT 264 (420)
T ss_pred CceEEEecccccchHHHHHhhc------CCCeEEEEecCchHHHHHhhc---------CcEEE--------EhHHh-hhc
Confidence 3478999999998888888753 46889999999854 333221 22232 23333 567
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
||.+|.+|.+
T Consensus 265 gDifiT~TGn 274 (420)
T COG0499 265 GDIFVTATGN 274 (420)
T ss_pred CCEEEEccCC
Confidence 7888888865
No 354
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=43.71 E-value=5e+02 Score=29.40 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred EEEEecc--chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhc-cccCCccEEEEEECCCCHHHHh-ccCc-c
Q 002475 385 ILILGWS--DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FDFMGTSVICRSGSPLILADLK-KVSV-S 459 (917)
Q Consensus 385 III~G~g--~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~-~~~~~~~V~~i~Gd~~d~e~L~-rAgI-~ 459 (917)
+|=+|.| +++..+++.|... +....++-+|-+.+.++...+++. .++....+.-+.||.++.-.+. .... .
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~----~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQ----KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhc----CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3335555 4678888888632 224678889999888888877664 4455556677999998876533 3222 3
Q ss_pred cccEEEEecCC-CCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHH
Q 002475 460 KARAIIVLASD-ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKL 513 (917)
Q Consensus 460 ~A~aVIilt~d-~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~l~~ 513 (917)
..+.++-+... +|-+..++..++.-+.-..+.|+ ..++.-+.-.++.+.+..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~--d~lLiG~D~~k~~~~l~~ 208 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS--DSFLIGLDGCKDPDKVLR 208 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC--CEEEEecCCCCCHHHHHH
Confidence 34555555544 44444344333333222146663 345554444444444443
No 355
>PRK07677 short chain dehydrogenase; Provisional
Probab=43.50 E-value=1.8e+02 Score=30.70 Aligned_cols=79 Identities=9% Similarity=0.090 Sum_probs=50.3
Q ss_pred CeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
+.++|.|.+. .|..+++.|.+. |..|++++..+ ++.+.+.+. .... +..+.++.+|.++++.++++-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~---G~~Vi~~~r~~--~~~~~~~~~---~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE---GANVVITGRTK--EKLEEAKLE---IEQF-PGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH---HHhc-CCcEEEEEecCCCHHHHHHHHHHH
Confidence 5788999865 599999999764 77888887543 222222210 0001 124678899999988776521
Q ss_pred ---CCCccEEEEecC
Q 002475 720 ---LETFDSILILAD 731 (917)
Q Consensus 720 ---Ie~adavIilsd 731 (917)
....|.+|-.+.
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 235688887765
No 356
>PRK07832 short chain dehydrogenase; Provisional
Probab=43.45 E-value=77 Score=34.18 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=46.8
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC-----
Q 002475 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (917)
Q Consensus 384 HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg----- 457 (917)
.++|.|.+. .+..++++|.+. +..|++++.+++..+...++... .....+.++.+|.++++.++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~------G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQ------GAELFLTDRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 588998765 577788888752 46788888777665554433210 11122445678888877765421
Q ss_pred -cccccEEEEecC
Q 002475 458 -VSKARAIIVLAS 469 (917)
Q Consensus 458 -I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 75 ~~~~id~lv~~ag 87 (272)
T PRK07832 75 AHGSMDVVMNIAG 87 (272)
T ss_pred hcCCCCEEEECCC
Confidence 124566665553
No 357
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=43.38 E-value=1.1e+02 Score=27.94 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=47.3
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
.+|+-+|.|. +.+...|.... .+..|+-+|.+++-++...++........++.+++||. .......+..|
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D 72 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLF----PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFD 72 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHH----TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEE
T ss_pred CEEEEEcCcC--CHHHHHHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCC
Confidence 5788888885 33333333311 24679999999987776655431122356899999998 22233344588
Q ss_pred EEEEec
Q 002475 463 AIIVLA 468 (917)
Q Consensus 463 aVIilt 468 (917)
.|++..
T Consensus 73 ~v~~~~ 78 (112)
T PF12847_consen 73 LVICSG 78 (112)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888866
No 358
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.37 E-value=59 Score=34.18 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=53.9
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcC-CceEEEEEcCcCCHhHHhcC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~-~~~v~~i~GD~t~~~~L~~a-- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..|+++...+ ++.+.+.+ .+. +..+.++.+|.++++.+.++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~---G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE---GARVVVTDRNE--EAAERVAA------EILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------HHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 4589999974 5699999999764 78888887654 23332221 011 23467889999999988653
Q ss_pred ----CCCCccEEEEecCC
Q 002475 719 ----PLETFDSILILADE 732 (917)
Q Consensus 719 ----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 74 ~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 74 AALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 13467988887764
No 359
>PLN00198 anthocyanidin reductase; Provisional
Probab=43.33 E-value=85 Score=35.09 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=49.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
...|+|.|.+. .|..++++|... ++.|+++..+.+............ ...++.++.||.++.+.+.++ +++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~-~~~ 80 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK------GYAVNTTVRDPENQKKIAHLRALQ-ELGDLKIFGADLTDEESFEAP-IAG 80 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC------CCEEEEEECCCCCHHHHHHHHhcC-CCCceEEEEcCCCChHHHHHH-Hhc
Confidence 45799998665 588888998763 455654444332211110000000 012578899999999888764 346
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
++.||-++..
T Consensus 81 ~d~vih~A~~ 90 (338)
T PLN00198 81 CDLVFHVATP 90 (338)
T ss_pred CCEEEEeCCC
Confidence 8999988864
No 360
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=43.30 E-value=66 Score=38.34 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~ 424 (917)
....++|+|+|..+..+++.+... +..|++++.++...
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~a 290 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPICA 290 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhH
Confidence 356899999999888888887642 56788898887553
No 361
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.29 E-value=86 Score=35.41 Aligned_cols=69 Identities=20% Similarity=0.124 Sum_probs=46.5
Q ss_pred ccC-eEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 381 EKN-HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 381 ~~~-HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
..+ -+||.|.+. .+...+++|.. +|..||+.-+|.+..++..++...+....++.+++.|-++.+..++
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~------~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELAL------RGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHH
Confidence 444 567778876 57888999975 2578888888887766666554333344566667777666666554
No 362
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.25 E-value=1.3e+02 Score=31.91 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=52.3
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+ ..|..+++.|.+. |.++++++... ++.+.+.+ .+ +..+.++.+|.++++.++++-
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~---G~~v~~~~r~~--~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE---GARVVIADIKP--ARARLAAL------EI-GPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEcCCH--HHHHHHHH------Hh-CCceEEEEccCCCHHHHHHHHHH
Confidence 4679999984 4599999999764 78888887643 33333332 11 123667899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 74 AVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2367888877653
No 363
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.15 E-value=1.9e+02 Score=30.22 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+. .|..+++.|.+. |..|+++...+. +.+.+.+. ... .+.++.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~---G~~Vi~~~r~~~--~~~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE---GVNVGLLARTEE--NLKAVAEE---VEA-YGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHH---HHH-hCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999864 599999999754 778888876432 22221110 001 1235678899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 78 LKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHcCCccEEEEcCcc
Confidence 2367888877653
No 364
>PRK06182 short chain dehydrogenase; Validated
Probab=43.13 E-value=1.4e+02 Score=32.22 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=51.9
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|. |..|..+++.|.+. |..|+++...+ ++.+.+.+ .+ +.++.+|.++.+.++++-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~--~~l~~~~~--------~~--~~~~~~Dv~~~~~~~~~~~~ 67 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ---GYTVYGAARRV--DKMEDLAS--------LG--VHPLSLDVTDEASIKAAVDT 67 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHh--------CC--CeEEEeeCCCHHHHHHHHHH
Confidence 368999997 45699999999764 78888887643 33333322 12 457899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.++.
T Consensus 68 ~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 68 IIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 2367888887764
No 365
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=43.10 E-value=43 Score=37.58 Aligned_cols=72 Identities=21% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
...+++|+|.|..|..+++.|... .+..+++++.. .++.+.+++ .+.. . .+ +.+.+.++ +.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r~--~~ra~~la~------~~g~-~--~~-----~~~~~~~~-l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANRT--YERAEELAK------ELGG-N--AV-----PLDELLEL-LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCC--HHHHHHHHH------HcCC-e--EE-----eHHHHHHH-Hh
Confidence 457899999999999999999753 23678888764 355555544 1211 1 11 22334443 66
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.+|.||..+..
T Consensus 238 ~aDvVi~at~~ 248 (311)
T cd05213 238 EADVVISATGA 248 (311)
T ss_pred cCCEEEECCCC
Confidence 79999988763
No 366
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.09 E-value=60 Score=34.35 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.+. .|..+++.|.+. |.+++++...+.+...+...+.. . .+..+.++.+|.++++.+.++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~---g~~vi~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~ 73 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA---GFDLAINDRPDDEELAATQQELR----A-LGVEVIFFPADVADLSAHEAMLDA 73 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC---CCEEEEEecCchhHHHHHHHHHH----h-cCCceEEEEecCCCHHHHHHHHHH
Confidence 35688888854 599999999864 77888887543222111111100 0 123467889999998876542
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 74 AQAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHHhcCCCCEEEECCcc
Confidence 12467888887754
No 367
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=43.09 E-value=52 Score=36.97 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=53.4
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCCh---HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~---~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
++++|.|. |-.|..+++.|.+. |.+|+.++..+. .++...+.+.. ....+..+.++.||.+|.+.+.++-
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~l~~~~ 74 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK---GYEVHGLIRRSSSFNTQRIEHIYEDP---HNVNKARMKLHYGDLTDSSNLRRII 74 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC---CCEEEEEecCCcccchhhhhhhhhcc---ccccccceeEEEeccCCHHHHHHHH
Confidence 47899998 56799999999764 788888875432 12222221100 0001224678999999998887642
Q ss_pred C-CCccEEEEecCC
Q 002475 720 L-ETFDSILILADE 732 (917)
Q Consensus 720 I-e~adavIilsd~ 732 (917)
- .+.|.|+=++..
T Consensus 75 ~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 75 DEIKPTEIYNLAAQ 88 (343)
T ss_pred HhCCCCEEEECCcc
Confidence 2 247888888764
No 368
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=42.97 E-value=69 Score=36.02 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=49.6
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcC-CHhHHhcCCCC
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAV-IRRHLESLPLE 721 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t-~~~~L~~a~Ie 721 (917)
.+|+|.|. |-.|..+++.|.+. .|.+|+.++..+ ++...+. +...+.++.||.+ +.+.+.++ +.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~~--~~~~~~~---------~~~~~~~~~~Dl~~~~~~~~~~-~~ 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQT--DRLGDLV---------NHPRMHFFEGDITINKEWIEYH-VK 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCcH--HHHHHhc---------cCCCeEEEeCCCCCCHHHHHHH-Hc
Confidence 36999998 88899999999753 257888887432 2222221 1123678899997 66666654 45
Q ss_pred CccEEEEecC
Q 002475 722 TFDSILILAD 731 (917)
Q Consensus 722 ~adavIilsd 731 (917)
.+|.||=++.
T Consensus 68 ~~d~ViH~aa 77 (347)
T PRK11908 68 KCDVILPLVA 77 (347)
T ss_pred CCCEEEECcc
Confidence 7898885543
No 369
>PRK12320 hypothetical protein; Provisional
Probab=42.96 E-value=1.1e+02 Score=38.42 Aligned_cols=68 Identities=24% Similarity=0.179 Sum_probs=48.1
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 384 HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
+|+|.|. |-.|..++++|... ++.|+++++.+... ...++.++.||..+.. +.++ +..+|
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~------G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~a-l~~~D 62 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA------GHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQEL-AGEAD 62 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC------CCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHH-hcCCC
Confidence 6999995 66688899998753 57888887654321 0135778999999985 5443 45789
Q ss_pred EEEEecCC
Q 002475 463 AIIVLASD 470 (917)
Q Consensus 463 aVIilt~d 470 (917)
.||-++..
T Consensus 63 ~VIHLAa~ 70 (699)
T PRK12320 63 AVIHLAPV 70 (699)
T ss_pred EEEEcCcc
Confidence 99998864
No 370
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.89 E-value=1.4e+02 Score=29.04 Aligned_cols=74 Identities=20% Similarity=0.126 Sum_probs=43.4
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcccc---CCccEEEEEECCCCHHHHhccCcccc
Q 002475 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF---MGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 385 III~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~---~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
|.|+|.|..+..++..|.+. ++.|.++.+.+ ..+...+ ..... .+.......-....+ ....+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP-RLEAIKE-QGLTITGPDGDETVQPPIVISAP----SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH-HHHHHHH-HCEEEEETTEEEEEEEEEEESSH----GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc-cHHhhhh-eeEEEEecccceecccccccCcc----hhccCCC
Confidence 68999999888888888763 57899998877 5554322 11111 011111111111112 4566789
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||+++..
T Consensus 69 D~viv~vKa 77 (151)
T PF02558_consen 69 DLVIVAVKA 77 (151)
T ss_dssp SEEEE-SSG
T ss_pred cEEEEEecc
Confidence 999999854
No 371
>PRK09135 pteridine reductase; Provisional
Probab=42.87 E-value=1.4e+02 Score=31.26 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=52.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |..++++..... +..+.+.+. + .......+.++.+|.++++.+.++-
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~---g~~v~~~~r~~~-~~~~~~~~~-~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA---GYRVAIHYHRSA-AEADALAAE-L--NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCCCH-HHHHHHHHH-H--HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3689999985 4599999999764 788888875422 222222110 0 0111123678899999998776532
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.++-.+..
T Consensus 79 ~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 79 CVAAFGRLDALVNNASS 95 (249)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2357888887763
No 372
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=42.80 E-value=65 Score=34.48 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.++ .|..+++.|.+. |..++++... +++..+.+.+. .....+.++.++..|.++++.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS---GVNIAFTYNS-NVEEANKIAED---LEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCC-CHHHHHHHHHH---HHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46889999865 499999999864 7788777532 22333222110 0011134567889999998766542
Q ss_pred ---CCCCccEEEEecC
Q 002475 719 ---PLETFDSILILAD 731 (917)
Q Consensus 719 ---~Ie~adavIilsd 731 (917)
.....|.+|-.+.
T Consensus 81 ~~~~~g~id~lv~nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHhcCCccEEEECcc
Confidence 1246787776653
No 373
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=42.72 E-value=84 Score=35.56 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCCh-----HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHh
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-----KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~-----~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~ 716 (917)
..||||.|+ |=+|...+-+|.+ .|..++++|+-.+ -.|.+.+.. +.-.|.|.+||-.|.+.|+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~---~gy~v~~vDNl~n~~~~sl~r~~~l~~--------~~~~v~f~~~Dl~D~~~L~ 70 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLK---RGYGVVIVDNLNNSYLESLKRVRQLLG--------EGKSVFFVEGDLNDAEALE 70 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHh---CCCcEEEEecccccchhHHHHHHHhcC--------CCCceEEEEeccCCHHHHH
Confidence 468999987 5568888888865 4889999986311 122222221 2346889999999999999
Q ss_pred c-CCCCCccEEEEecCCC-CcC---ccccCcHHHHHHHHHH
Q 002475 717 S-LPLETFDSILILADES-LED---SIVHSDSRSLATLLLI 752 (917)
Q Consensus 717 ~-a~Ie~adavIilsd~~-~~~---~~~~~Da~~l~t~L~~ 752 (917)
+ -....+|+||=++.+. ..+ .+..=+..|+...|.+
T Consensus 71 kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnl 111 (343)
T KOG1371|consen 71 KLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNL 111 (343)
T ss_pred HHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHH
Confidence 8 4567799999988753 111 2344455555544433
No 374
>PRK08264 short chain dehydrogenase; Validated
Probab=42.70 E-value=1.9e+02 Score=30.19 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=50.4
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCC-eEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~-~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 718 (917)
.++++|.|. |..|..+++.|.+. |. .|+++...+. +... . +..+.++.+|.++.+.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~---G~~~V~~~~r~~~--~~~~---~--------~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR---GAAKVYAAARDPE--SVTD---L--------GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CcccEEEEecChh--hhhh---c--------CCceEEEEecCCCHHHHHHHHH
Confidence 468999997 55699999999764 66 7777775432 1111 1 12367789999998887653
Q ss_pred CCCCccEEEEecCC
Q 002475 719 PLETFDSILILADE 732 (917)
Q Consensus 719 ~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 70 ~~~~id~vi~~ag~ 83 (238)
T PRK08264 70 AASDVTILVNNAGI 83 (238)
T ss_pred hcCCCCEEEECCCc
Confidence 23457888887764
No 375
>PLN02823 spermine synthase
Probab=42.66 E-value=84 Score=35.83 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=49.5
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC-CCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-LDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~g-l~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.+++++|+|.|.-+ +++++.++ .+...++++|-++ +..+...+.- .....+.+.++.++.||+.. .|++ .-
T Consensus 103 ~pk~VLiiGgG~G~--~~re~l~~-~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~L~~-~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGS--TAREVLRH-KTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARA--ELEK-RD 174 (336)
T ss_pred CCCEEEEECCCchH--HHHHHHhC-CCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHH--HHhh-CC
Confidence 46799999998553 34555443 2346799998754 3333333211 00112345678889999764 5654 34
Q ss_pred CCccEEEEecC
Q 002475 721 ETFDSILILAD 731 (917)
Q Consensus 721 e~adavIilsd 731 (917)
+++|.|++-..
T Consensus 175 ~~yDvIi~D~~ 185 (336)
T PLN02823 175 EKFDVIIGDLA 185 (336)
T ss_pred CCccEEEecCC
Confidence 78999888543
No 376
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=42.52 E-value=64 Score=35.89 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=50.7
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCC--hHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CC
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 720 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p--~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~I 720 (917)
+++|.|. |-.|..+++.|.+. |.+|++++... .......+.+ +.+..+.++.+|.++.+.+.++ .-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN---GHDVVILDNLCNSKRSVLPVIER-------LGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC---CCeEEEEecCCCchHhHHHHHHH-------hcCCCceEEEccCCCHHHHHHHHhc
Confidence 5899996 77799999999754 78888886321 1111111111 1222356789999999887664 22
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
..+|.||-++..
T Consensus 72 ~~~d~vvh~a~~ 83 (338)
T PRK10675 72 HAIDTVIHFAGL 83 (338)
T ss_pred CCCCEEEECCcc
Confidence 368999988753
No 377
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=42.41 E-value=95 Score=33.20 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=39.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
..++|.|.+. .+..++++|.+. +..|+++ ..+++..+........ ..+.++.++..|.++++.+++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~ 76 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQS------GVNIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPETYKE 76 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHH
Confidence 4777888876 578888998753 4566665 4455555444332210 012356677777777766554
No 378
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.31 E-value=1.4e+02 Score=31.68 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=51.9
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |..+++++..++ +.+.+.+. ... .+..+.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~---i~~-~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA---GARVVLSARKAE--ELEEAAAH---LEA-LGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHH---HHh-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 4689999974 4599999999764 778888876432 22222110 000 1234667899999998874411
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2357888888764
No 379
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.26 E-value=2.5e+02 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=27.5
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d 420 (917)
.+.+|+|+|.|-.+..++..|.... -..++++|.|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-----vg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-----VGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-----CCeEEEEeCC
Confidence 4668999999999999999998653 2356777776
No 380
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.06 E-value=61 Score=38.02 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
..+++|+|.|..+..+++.|... |..|+++|.+. +.++....++ ...++.++.++..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEEL----GELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHH----HhcCCEEEeCCcchh------Hhhc
Confidence 46799999999888888888753 67899998764 3343322222 123466777877762 2356
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
+|.||..++.
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 8888887754
No 381
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=41.89 E-value=75 Score=36.38 Aligned_cols=74 Identities=11% Similarity=0.004 Sum_probs=52.1
Q ss_pred CCCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 642 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 642 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
..++|+|.|. |-.|..+++.|.+. |.+|+.++..+.. .+... . ..+.++.||.++.+.+.++ +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~---G~~V~~v~r~~~~----~~~~~-----~---~~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE---GHYIIASDWKKNE----HMSED-----M---FCHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC---CCEEEEEEecccc----ccccc-----c---ccceEEECCCCCHHHHHHH-H
Confidence 4578999999 78899999999864 7889888753210 11110 0 1135678999998887765 3
Q ss_pred CCccEEEEecC
Q 002475 721 ETFDSILILAD 731 (917)
Q Consensus 721 e~adavIilsd 731 (917)
.++|.||=++.
T Consensus 84 ~~~D~Vih~Aa 94 (370)
T PLN02695 84 KGVDHVFNLAA 94 (370)
T ss_pred hCCCEEEEccc
Confidence 56899998875
No 382
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=41.88 E-value=2.8e+02 Score=30.72 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHH-HhccCccccc
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD-LKKVSVSKAR 462 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~-L~rAgI~~A~ 462 (917)
+|-|+|.|..+..+++.|... ++.|++.|.+++.++...+ .++. . ..+.+. .+++ +.|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~~~~~~~~--------~g~~---~-~~s~~~~~~~~--~~ad 61 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQEAVDVAGK--------LGIT---A-RHSLEELVSKL--EAPR 61 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHH--------CCCe---e-cCCHHHHHHhC--CCCC
Confidence 578999999999999999753 4678889998877765432 1111 1 123333 3333 3578
Q ss_pred EEEEecCC
Q 002475 463 AIIVLASD 470 (917)
Q Consensus 463 aVIilt~d 470 (917)
.||++..+
T Consensus 62 vVi~~vp~ 69 (299)
T PRK12490 62 TIWVMVPA 69 (299)
T ss_pred EEEEEecC
Confidence 89888865
No 383
>PLN00198 anthocyanidin reductase; Provisional
Probab=41.87 E-value=87 Score=35.02 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=51.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~-Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.++++|.|.. -.|..+++.|.+. |.+|+++..++.. .....+.. + ...+ .+.+++||.++++.+.++ +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~--~--~~~~--~~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK---GYAVNTTVRDPENQKKIAHLRA--L--QELG--DLKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC---CCEEEEEECCCCCHHHHHHHHh--c--CCCC--ceEEEEcCCCChHHHHHH-H
Confidence 5679999975 5699999999864 7777655433211 11111110 0 0111 367789999999887764 4
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
.++|.|+-++..
T Consensus 79 ~~~d~vih~A~~ 90 (338)
T PLN00198 79 AGCDLVFHVATP 90 (338)
T ss_pred hcCCEEEEeCCC
Confidence 568999988864
No 384
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.77 E-value=62 Score=34.13 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|. |..|..+++.|.+. |.+++++..... ++.+.+.+. + .. .+..+.++.+|.++++.++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~---G~~V~~~~r~~~-~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA---GAHVVVNYRQKA-PRANKVVAE-I--EA-AGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC---CCEEEEEeCCch-HhHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 368999998 56699999999753 778877764322 222222110 0 00 122367789999999877542
Q ss_pred ---CCCCccEEEEecC
Q 002475 719 ---PLETFDSILILAD 731 (917)
Q Consensus 719 ---~Ie~adavIilsd 731 (917)
.....|.+|..+.
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 78 AREEFGGLDALVLNAS 93 (248)
T ss_pred HHHhCCCCcEEEECCC
Confidence 1246788887764
No 385
>PRK00811 spermidine synthase; Provisional
Probab=41.73 E-value=67 Score=35.54 Aligned_cols=81 Identities=9% Similarity=0.069 Sum_probs=47.2
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC--CCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG--LDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~g--l~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.+++++++|.|.-+ +++++.++ ....+|+++|-++ +..+...+.- +....+.+.++.++.||+.. .|++ .
T Consensus 76 ~p~~VL~iG~G~G~--~~~~~l~~-~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~-~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGG--TLREVLKH-PSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE-T 147 (283)
T ss_pred CCCEEEEEecCchH--HHHHHHcC-CCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-C
Confidence 46799999998753 23444333 2235799998754 3333332210 00001234567889999754 4544 4
Q ss_pred CCCccEEEEec
Q 002475 720 LETFDSILILA 730 (917)
Q Consensus 720 Ie~adavIils 730 (917)
-+++|.||+-+
T Consensus 148 ~~~yDvIi~D~ 158 (283)
T PRK00811 148 ENSFDVIIVDS 158 (283)
T ss_pred CCcccEEEECC
Confidence 56899998844
No 386
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=41.72 E-value=3.2e+02 Score=30.74 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=46.7
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcc--ccCCccEEEEEECCCCHHHHhccCcc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~--~~~~~~V~~i~Gd~~d~e~L~rAgI~ 459 (917)
..+|.|+|.|..+..++-.|...+ -...++|+|.+++.++....++.. .+. .++. +.+ .+.++ ++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~----~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~-i~~--~~~~~-----~~ 72 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQG----IADELVIIDINKEKAEGDAMDLSHAVPFT-SPTK-IYA--GDYSD-----CK 72 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeE-EEe--CCHHH-----hC
Confidence 469999999998888887776421 234788999876654443333311 111 1232 222 23444 45
Q ss_pred cccEEEEecCC
Q 002475 460 KARAIIVLASD 470 (917)
Q Consensus 460 ~A~aVIilt~d 470 (917)
+||.||++...
T Consensus 73 ~adivIitag~ 83 (315)
T PRK00066 73 DADLVVITAGA 83 (315)
T ss_pred CCCEEEEecCC
Confidence 89999998876
No 387
>PLN02686 cinnamoyl-CoA reductase
Probab=41.69 E-value=86 Score=35.87 Aligned_cols=79 Identities=13% Similarity=0.078 Sum_probs=48.9
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcccc-----CCccEEEEEECCCCHHHHh
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF-----MGTSVICRSGSPLILADLK 454 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~-----~~~~V~~i~Gd~~d~e~L~ 454 (917)
..+.|+|.|.+. .+..++++|... ++.|+++..+.+..+.. ..+ ..+ ...++.++.||.++.+.+.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~------G~~V~~~~r~~~~~~~l-~~l-~~~~~~~~~~~~~~~v~~Dl~d~~~l~ 123 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH------GYSVRIAVDTQEDKEKL-REM-EMFGEMGRSNDGIWTVMANLTEPESLH 123 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHH-HHH-hhhccccccCCceEEEEcCCCCHHHHH
Confidence 356789999854 578888888753 46666654444433322 111 000 0124788999999999887
Q ss_pred ccCcccccEEEEec
Q 002475 455 KVSVSKARAIIVLA 468 (917)
Q Consensus 455 rAgI~~A~aVIilt 468 (917)
++ ++.++.++-++
T Consensus 124 ~~-i~~~d~V~hlA 136 (367)
T PLN02686 124 EA-FDGCAGVFHTS 136 (367)
T ss_pred HH-HHhccEEEecC
Confidence 65 45677776443
No 388
>PRK07063 short chain dehydrogenase; Provisional
Probab=41.46 E-value=1.4e+02 Score=31.68 Aligned_cols=83 Identities=6% Similarity=0.035 Sum_probs=52.6
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+. .|..+++.|.+. |..+++++..+ ++.+.+.+. +. ....+..+.++.+|.++++.++++-
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~---G~~vv~~~r~~--~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE---GAAVALADLDA--ALAERAAAA-IA-RDVAGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-HH-hccCCceEEEEEccCCCHHHHHHHHHH
Confidence 46799999864 599999999764 78888887543 222222210 00 0001334678899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 2467888887763
No 389
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=41.44 E-value=1.4e+02 Score=34.91 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=51.6
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
.++++|.|.+ ..|..++++|.+. |.++++++..++ +..+.+.+. ...+..+.+|.++++.+.+. ++
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~---G~~Vi~l~r~~~-~l~~~~~~~--------~~~v~~v~~Dvsd~~~v~~~-l~ 244 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ---GAKVVALTSNSD-KITLEINGE--------DLPVKTLHWQVGQEAALAEL-LE 244 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHHHhhc--------CCCeEEEEeeCCCHHHHHHH-hC
Confidence 4689999985 4599999999764 788888875432 222222110 11245678999999887764 46
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
+.|.+|..++.
T Consensus 245 ~IDiLInnAGi 255 (406)
T PRK07424 245 KVDILIINHGI 255 (406)
T ss_pred CCCEEEECCCc
Confidence 78988877653
No 390
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=41.43 E-value=1.1e+02 Score=33.86 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh---HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~---e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI 458 (917)
..+++|+|.|-.+..++..|.... -..|++++++. ++.+...+++... ...+.+...|..+.+.+.. .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G-----~~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG-----AKEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHh-hh
Confidence 458999999988888888886532 23477788775 4555544432111 1233444566666666543 45
Q ss_pred ccccEEEEecCC
Q 002475 459 SKARAIIVLASD 470 (917)
Q Consensus 459 ~~A~aVIilt~d 470 (917)
+.++.+|-.|.-
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 677888888865
No 391
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.04 E-value=1.6e+02 Score=30.51 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=50.6
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
++++|.|.. ..|..+++.|.+. |..++++..... +..+.+.+. . ...+.++.++.+|.++.+.++++-
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~---g~~v~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARA---GADVVVHYRSDE-EAAEELVEA---V-EALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCCH-HHHHHHHHH---H-HhcCCceEEEECCcCCHHHHHHHHHHH
Confidence 589999984 5599999999764 667666544322 222222110 0 001234678899999998776531
Q ss_pred ---CCCccEEEEecCC
Q 002475 720 ---LETFDSILILADE 732 (917)
Q Consensus 720 ---Ie~adavIilsd~ 732 (917)
....|.+|-++..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 79 VERFGRIDILVNNAGI 94 (249)
T ss_pred HHHcCCCCEEEECCcc
Confidence 2467888887763
No 392
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=41.03 E-value=95 Score=34.51 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=60.3
Q ss_pred CeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCC-cc-CcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 644 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD-IS-GLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 644 ~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~-~~-~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
+||+|+|+|.-+ +++++.++. +-..+++++-++ +- -.++..-+. +. ...+-++..+.+|+. +.+++..-
T Consensus 78 k~VLiiGgGdG~--tlRevlkh~-~ve~i~~VEID~--~V-i~~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~- 148 (282)
T COG0421 78 KRVLIIGGGDGG--TLREVLKHL-PVERITMVEIDP--AV-IELARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEE- 148 (282)
T ss_pred CeEEEECCCccH--HHHHHHhcC-CcceEEEEEcCH--HH-HHHHHHhccCcccccCCCceEEEeccHH--HHHHhCCC-
Confidence 699999999874 456666552 236788888643 22 222222221 11 111456777888864 45555443
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcc
Q 002475 722 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQS 757 (917)
Q Consensus 722 ~adavIilsd~~~~~~~~~~Da~~l~t~L~~r~l~~ 757 (917)
++|.||+-+.+.. .=+++|++--..+.+..
T Consensus 149 ~fDvIi~D~tdp~------gp~~~Lft~eFy~~~~~ 178 (282)
T COG0421 149 KFDVIIVDSTDPV------GPAEALFTEEFYEGCRR 178 (282)
T ss_pred cCCEEEEcCCCCC------CcccccCCHHHHHHHHH
Confidence 9999999776542 22567888887777653
No 393
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=40.99 E-value=2.6e+02 Score=29.82 Aligned_cols=81 Identities=10% Similarity=-0.036 Sum_probs=52.2
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+. .|..+++.|.+. |..+++++..+. +.+.+.+. ... .+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~---G~~vv~~~~~~~--~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA---GATIVFNDINQE--LVDKGLAA---YRE-LGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHH--HHHHHHHH---HHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 46799999865 489999999764 778888865432 22222110 000 1234678899999998776532
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 2457888887764
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=40.97 E-value=99 Score=32.85 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=48.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.+.++|.|.+. .+..++++|... +..|++++.+.+..+....... . .+.++.++..|.++.+.++++-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~------G~~vv~~~r~~~~~~~~~~~l~-~-~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA------GASVVVSDINADAANHVVDEIQ-Q-LGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH-h-cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45677778765 477888888753 4667777777665554433221 1 1235677888888888776531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
...-+.+|-++.
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 123466666553
No 395
>PRK06484 short chain dehydrogenase; Validated
Probab=40.93 E-value=79 Score=37.74 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=42.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
.++++|.|.+. .+..++++|.+. +..|++++++++.++...+.. +.++.++.+|.++++.+++
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~ 332 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAA------GDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVES 332 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHH
Confidence 45788888776 578888888753 567888888877766554322 2345567777777776554
No 396
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.91 E-value=91 Score=33.52 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=37.3
Q ss_pred CeEEEEecc---chHHHHHHHHHHhcccCCCCceEEEEcCC---hHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERD---KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g---~~~~~li~eL~~~~~~~~~~~~VVLid~d---~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
..++|.|.+ ..+..++++|.+. +..|+++..+ ++.+++..++. .+.++.++..|.++++..++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~------G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNA------GAKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC------CCEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHH
Confidence 478888974 5799999999753 5567777542 33444433221 12345555666666655443
No 397
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=40.89 E-value=99 Score=32.53 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=47.0
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e-~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
+.++|.|.+. .+..++++|.+. +..|+++++++. .....+.+ .+.++.++.+|.++++.+.++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~------G~~vi~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEA------GADIVGAGRSEPSETQQQVEA-----LGRRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCchHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHH
Confidence 5688888764 588888998753 567888876542 22222221 123577888898888877642
Q ss_pred --CcccccEEEEecC
Q 002475 457 --SVSKARAIIVLAS 469 (917)
Q Consensus 457 --gI~~A~aVIilt~ 469 (917)
.....|.+|-.+.
T Consensus 75 ~~~~~~~d~li~~ag 89 (248)
T TIGR01832 75 VEEFGHIDILVNNAG 89 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 1234566665553
No 398
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=40.75 E-value=89 Score=34.63 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=52.7
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCCh-HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 720 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~-~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 720 (917)
.+.++|.|. |-.|..+++.|.+. |.+|+++...+. .++...+.... .. ...+.++.||.++++.+.++ +
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~----~~-~~~~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR---GYTVKATVRDLTDRKKTEHLLALD----GA-KERLKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCCcchHHHHHHHhcc----CC-CCceEEEecCCCCcchHHHH-H
Confidence 468999997 56799999999764 777876543322 12222221100 00 12367789999999888765 4
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
+.+|.||-++..
T Consensus 76 ~~~d~vih~A~~ 87 (322)
T PLN02986 76 EGCDAVFHTASP 87 (322)
T ss_pred hCCCEEEEeCCC
Confidence 468999988864
No 399
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.70 E-value=66 Score=33.89 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=50.1
Q ss_pred CeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
++++|.|.+. .|..+++.|.+. |.+++++..... +..+.+.+. . +-.+..+.++.+|.++++.++++=
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~---g~~v~~~~~r~~-~~~~~~~~~---~-~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE---GYDIAVNYARSR-KAAEETAEE---I-EALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCCCH-HHHHHHHHH---H-HhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5899999854 599999999764 777776532222 222222110 0 001234678899999998776531
Q ss_pred ---CCCccEEEEecCC
Q 002475 720 ---LETFDSILILADE 732 (917)
Q Consensus 720 ---Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2357888887753
No 400
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.60 E-value=75 Score=34.05 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|. +..|..+++.|.+. |..|++++..+ +..+.+.+ .+ +.++.++.+|.++++.++++=
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~------~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA---GARVAIVDIDA--DNGAAVAA------SL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------Hh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 468999998 45699999999764 78888887643 22222322 11 224678899999998776531
Q ss_pred ----CCCccEEEEecC
Q 002475 720 ----LETFDSILILAD 731 (917)
Q Consensus 720 ----Ie~adavIilsd 731 (917)
....|.+|-.+.
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 235688877665
No 401
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=40.56 E-value=72 Score=37.86 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=42.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..-|+++|.|+ |.-...-+ .+....++...|..+|+++..+..+.......-.+..|.+++||..+.+.-+ +|
T Consensus 187 ~~vVldVGAGr-GpL~~~al-~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-----kv 259 (448)
T PF05185_consen 187 DKVVLDVGAGR-GPLSMFAL-QAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-----KV 259 (448)
T ss_dssp T-EEEEES-TT-SHHHHHHH-HTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS------E
T ss_pred ceEEEEeCCCc-cHHHHHHH-HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-----ce
Confidence 34678899997 33322222 2221122457889999988654332221111223567999999887776644 67
Q ss_pred cEEEE
Q 002475 462 RAIIV 466 (917)
Q Consensus 462 ~aVIi 466 (917)
|.||.
T Consensus 260 DIIVS 264 (448)
T PF05185_consen 260 DIIVS 264 (448)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77775
No 402
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=40.45 E-value=2.7e+02 Score=32.73 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=40.3
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|+.+..++++|.+... .+-.+|=++|.+++.. ... .++. +.|+..+...+ +.-.+.
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~--~g~~vvG~idd~~~~~-~~i---------~g~p-Vlg~~~~l~~~--i~~~~i 189 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPD--LGYRVVGFVDDRPSDR-VEV---------AGLP-VLGKLDDLVEL--VRAHRV 189 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCcc--CCeEEEEEEeCCcccc-ccc---------CCCc-ccCCHHHHHHH--HHhCCC
Confidence 4579999999999999999975321 1123444456544321 100 1222 23443332222 223467
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.|++..+.
T Consensus 190 d~ViIa~p~ 198 (445)
T TIGR03025 190 DEVIIALPL 198 (445)
T ss_pred CEEEEecCc
Confidence 888887654
No 403
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=40.31 E-value=88 Score=33.20 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=52.6
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|. |..|..+++.|.+. |.+|++++..+ ++.+.+.+. ... .+..+.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~~---i~~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA---GAEVILNGRDP--AKLAAAAES---LKG-QGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH---HHh-cCceEEEEEccCCCHHHHHHHHHH
Confidence 468999998 45699999999764 78888887543 222222110 000 1234678899999998776541
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 81 ~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 81 FEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2357888887764
No 404
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.31 E-value=68 Score=34.28 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=50.8
Q ss_pred CCeEEEEccc---cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg---~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.+.++|.|.+ ..|..+++.|.+. |..|++.... ++..+.+.+ +....+.++..|.++++..+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~---G~~Vi~~~r~--~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ---GATVIYTYQN--DRMKKSLQK-------LVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC---CCEEEEecCc--hHHHHHHHh-------hccCceeEEeCCCCCHHHHHHHH
Confidence 4689999986 6899999999764 7888887643 222222222 1122356789999998876542
Q ss_pred -----CCCCccEEEEecC
Q 002475 719 -----PLETFDSILILAD 731 (917)
Q Consensus 719 -----~Ie~adavIilsd 731 (917)
...+.|.+|-.+.
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 2346788776554
No 405
>PRK07985 oxidoreductase; Provisional
Probab=40.30 E-value=65 Score=35.46 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.++ .|..+++.|.+. |..+++.....+.+..+.+.+. ... .+..+.++.+|.++++.+.++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~---G~~Vi~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYARE---GADVAISYLPVEEEDAQDVKKI---IEE-CGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEecCCcchhhHHHHHHH---HHH-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 36899999854 599999999864 7888776532222222222210 000 123466789999998876542
Q ss_pred ---CCCCccEEEEecC
Q 002475 719 ---PLETFDSILILAD 731 (917)
Q Consensus 719 ---~Ie~adavIilsd 731 (917)
.....|.+|..+.
T Consensus 122 ~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 122 AHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHhCCCCEEEECCC
Confidence 2345688887665
No 406
>PRK08628 short chain dehydrogenase; Provisional
Probab=40.25 E-value=88 Score=33.21 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=48.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--c
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--I 458 (917)
.+.++|.|.+. .+..++++|.+. +..|+++..+++.. ...+... . .+.++.++.+|.++++.++++= +
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~------G~~v~~~~r~~~~~-~~~~~~~-~-~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEE------GAIPVIFGRSAPDD-EFAEELR-A-LQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc------CCcEEEEcCChhhH-HHHHHHH-h-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788888764 588888998753 45677777665443 2222210 0 1345778889999888876631 1
Q ss_pred ----ccccEEEEecC
Q 002475 459 ----SKARAIIVLAS 469 (917)
Q Consensus 459 ----~~A~aVIilt~ 469 (917)
...+.+|-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 24566666654
No 407
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.14 E-value=63 Score=31.52 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=45.3
Q ss_pred EEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002475 646 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 725 (917)
Q Consensus 646 ilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ada 725 (917)
|+|+|-|..|..++..|.+. |.+|+++... . +.+.+.+.|+....-.........-..... ....+.+|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~---g~~V~l~~r~--~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA---GHDVTLVSRS--P-RLEAIKEQGLTITGPDGDETVQPPIVISAP----SADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT---TCEEEEEESH--H-HHHHHHHHCEEEEETTEEEEEEEEEEESSH----GHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHHC---CCceEEEEcc--c-cHHhhhheeEEEEecccceecccccccCcc----hhccCCCcE
Confidence 68999999999999999863 7889999863 2 445565555422111111111111111122 456788998
Q ss_pred EEEecC
Q 002475 726 ILILAD 731 (917)
Q Consensus 726 vIilsd 731 (917)
+++.+-
T Consensus 71 viv~vK 76 (151)
T PF02558_consen 71 VIVAVK 76 (151)
T ss_dssp EEE-SS
T ss_pred EEEEec
Confidence 888763
No 408
>PRK12743 oxidoreductase; Provisional
Probab=40.10 E-value=1.6e+02 Score=31.33 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=50.6
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+. .|..+++.|.+. |..|+++...+. +..+.+.+. ... .+..+.++.+|.++.+.++++-
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~---G~~V~~~~~~~~-~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ---GFDIGITWHSDE-EGAKETAEE---VRS-HGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCCh-HHHHHHHHH---HHh-cCCceEEEEccCCCHHHHHHHHHH
Confidence 35789999865 599999999764 778877753222 222222110 001 1234678899999987664421
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|..+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2357888887764
No 409
>PRK09186 flagellin modification protein A; Provisional
Probab=39.97 E-value=85 Score=33.20 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=50.4
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |.+++++...+ +..+.+.+. +. ..+.+..+.++.+|.++++.+.++-
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~---g~~v~~~~r~~--~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA---GGIVIAADIDK--EALNELLES-LG-KEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEecCh--HHHHHHHHH-HH-hhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 4689999985 5699999999764 77888886543 232222110 00 0112223556799999998776531
Q ss_pred ----CCCccEEEEecC
Q 002475 720 ----LETFDSILILAD 731 (917)
Q Consensus 720 ----Ie~adavIilsd 731 (917)
....|.+|-.+.
T Consensus 77 ~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 77 SAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHcCCccEEEECCc
Confidence 123688887663
No 410
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=39.91 E-value=3.2e+02 Score=29.04 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.5
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
.+-||+|+|.|..+..+++.|.... -..++++|.|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-----vg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-----VGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-----CCEEEEEcCCE
Confidence 4679999999999999999998753 24556666553
No 411
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=39.83 E-value=1.1e+02 Score=33.13 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=49.8
Q ss_pred cccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEE-EEEECCCCHHHHhccCc
Q 002475 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI-CRSGSPLILADLKKVSV 458 (917)
Q Consensus 380 ~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~-~i~Gd~~d~e~L~rAgI 458 (917)
..+.|++|+|.|..+..+++..... +..|+++|..++..... .+ .++. ++..++ .+.+.. +
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~l------Gf~V~v~D~R~~~~~~~------~~--~~~~~~~~~~~--~~~~~~--~ 159 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPL------PCRVTWVDSREAEFPED------LP--DGVATLVTDEP--EAEVAE--A 159 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcC------CCEEEEEeCCccccccc------CC--CCceEEecCCH--HHHHhc--C
Confidence 4568999999999888777766542 67888998766522110 11 1232 232332 333333 4
Q ss_pred ccccEEEEecCCCCCCcchHHHHHHHH
Q 002475 459 SKARAIIVLASDENADQSDARALRVVL 485 (917)
Q Consensus 459 ~~A~aVIilt~d~~~~~sD~~Ni~~~L 485 (917)
..-+++++++.++ .-|...+..++
T Consensus 160 ~~~t~vvi~th~h---~~D~~~L~~aL 183 (246)
T TIGR02964 160 PPGSYFLVLTHDH---ALDLELCHAAL 183 (246)
T ss_pred CCCcEEEEEeCCh---HHHHHHHHHHH
Confidence 5667888888762 33655544444
No 412
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.81 E-value=69 Score=34.81 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=50.8
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
++.++|-|.+..|..+++.|. .|..|++++..+ +..+.+.+. ... .+.++.++.+|.++++.++++-
T Consensus 2 ~k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~--~~~~~~~~~---l~~-~~~~~~~~~~Dv~d~~~i~~~~~~~ 71 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE--ENLEAAAKT---LRE-AGFDVSTQEVDVSSRESVKALAATA 71 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH--HHHHHHHHH---HHh-cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 457888888878999999983 378898887543 222222110 000 1235678899999988765431
Q ss_pred --CCCccEEEEecCC
Q 002475 720 --LETFDSILILADE 732 (917)
Q Consensus 720 --Ie~adavIilsd~ 732 (917)
....|.+|-.++.
T Consensus 72 ~~~g~id~li~nAG~ 86 (275)
T PRK06940 72 QTLGPVTGLVHTAGV 86 (275)
T ss_pred HhcCCCCEEEECCCc
Confidence 2357888877753
No 413
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.80 E-value=58 Score=38.52 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 679 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p 679 (917)
.++++|+|+|+.|..+++.|.+. |..|++.|..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~---G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL---GAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC---CCEEEEECCCC
Confidence 46899999999999999999764 78899988643
No 414
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=39.78 E-value=3e+02 Score=31.60 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=27.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
.+-||+|+|.|-.+..+++.|.... -..+.++|.|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G-----vg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG-----VGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC-----CCeEEEEeCCE
Confidence 4679999999999999999998653 23456666654
No 415
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=39.74 E-value=3.5e+02 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=45.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccccE
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~a 463 (917)
+|-|+|.|..+..+++.|... ++.|++.|.+++..+...+ .++.+ ..+.+++.+. .++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~~~~~~~--------~g~~~----~~~~~e~~~~-~~~~dv 62 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEAVEALAE--------EGATG----ADSLEELVAK-LPAPRV 62 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHH--------CCCee----cCCHHHHHhh-cCCCCE
Confidence 688999999999999999763 5678889999888776532 12221 2234443221 235788
Q ss_pred EEEecCC
Q 002475 464 IIVLASD 470 (917)
Q Consensus 464 VIilt~d 470 (917)
||++..+
T Consensus 63 vi~~v~~ 69 (301)
T PRK09599 63 VWLMVPA 69 (301)
T ss_pred EEEEecC
Confidence 8888765
No 416
>PRK10750 potassium transporter; Provisional
Probab=39.56 E-value=90 Score=37.42 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhhhcCCCHHHHHHHHHHhhhccCCCCCc
Q 002475 296 IFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR 334 (917)
Q Consensus 296 l~lil~g~~~~~~~e~~s~~dAly~~~~tvTTvGygd~~ 334 (917)
+++.+++.++| +..+++++||++.++.+++|-||.-.+
T Consensus 190 ~~lT~~~~~ll-~~~Gm~~fdAi~ha~saisTgGFs~~~ 227 (483)
T PRK10750 190 VLLTVACALAL-WFAGMDAFDAIGHSFSTIAIGGFSTHD 227 (483)
T ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhccCcCCCc
Confidence 33344444444 467899999999999999999996543
No 417
>PRK12746 short chain dehydrogenase; Provisional
Probab=39.50 E-value=2e+02 Score=30.35 Aligned_cols=82 Identities=13% Similarity=-0.023 Sum_probs=50.7
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..+.++.... .+..+.+.+. + .-.+..+.++++|.+|++.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~---G~~v~i~~~r~-~~~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAND---GALVAIHYGRN-KQAADETIRE-I---ESNGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCCC-HHHHHHHHHH-H---HhcCCcEEEEEcCcCCHHHHHHHHHH
Confidence 3689999985 4599999999764 77776653222 2222222110 0 00123467789999999887653
Q ss_pred ---------CCCCccEEEEecCC
Q 002475 719 ---------PLETFDSILILADE 732 (917)
Q Consensus 719 ---------~Ie~adavIilsd~ 732 (917)
+-...|.+|-.+..
T Consensus 78 ~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEECCCC
Confidence 12367888877764
No 418
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=39.43 E-value=42 Score=34.33 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCCh
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 680 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~ 680 (917)
-..+++.|+|+|++|..+++.|..+ |.+|..++..+.
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCC
Confidence 3478999999999999999999987 788999987654
No 419
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=39.35 E-value=1.7e+02 Score=34.36 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHhhhcCcccccccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCC
Q 002475 369 VDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (917)
Q Consensus 369 ~~~lr~G~~~~~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~ 448 (917)
++.+.+........+.++|+|+|..+..++..+... |..|+++|.++.+.+.... .++.++
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d~~R~~~A~~--------~G~~~~----- 249 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVDPICALQAAM--------EGYEVM----- 249 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECChhhHHHHHh--------cCCEEc-----
Q ss_pred CHHHHhccCcccccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEE
Q 002475 449 ILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVV 499 (917)
Q Consensus 449 d~e~L~rAgI~~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~II 499 (917)
.+.++ +..||.||.++.. ..+...-.+..+.+ ...++
T Consensus 250 ---~~~e~-v~~aDVVI~atG~--------~~~i~~~~l~~mk~--Ggilv 286 (413)
T cd00401 250 ---TMEEA-VKEGDIFVTTTGN--------KDIITGEHFEQMKD--GAIVC 286 (413)
T ss_pred ---cHHHH-HcCCCEEEECCCC--------HHHHHHHHHhcCCC--CcEEE
No 420
>PRK06198 short chain dehydrogenase; Provisional
Probab=39.29 E-value=1e+02 Score=32.66 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=49.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCce-EEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--C
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVI-VVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~-VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--g 457 (917)
.+.++|.|.+. .+..++++|... +.. |++++.+++..+.....+ ...+.++.++.+|.++++.+.++ .
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~------G~~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER------GAAGLVICGRNAEKGEAQAAEL--EALGAKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHHH--HhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 35688888764 577788888753 344 778887765554333222 11133577788999988877654 1
Q ss_pred ----cccccEEEEecC
Q 002475 458 ----VSKARAIIVLAS 469 (917)
Q Consensus 458 ----I~~A~aVIilt~ 469 (917)
....+.+|-+..
T Consensus 78 ~~~~~g~id~li~~ag 93 (260)
T PRK06198 78 ADEAFGRLDALVNAAG 93 (260)
T ss_pred HHHHhCCCCEEEECCC
Confidence 124567766654
No 421
>PRK07102 short chain dehydrogenase; Provisional
Probab=39.23 E-value=1.6e+02 Score=31.02 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=49.8
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 719 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 719 (917)
++++|.|. |..|..+++.|.+. |..|++++..+. ..+.+.+. .....+.++.++++|.++++.++++-
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~---G~~Vi~~~r~~~--~~~~~~~~---~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA---GARLYLAARDVE--RLERLADD---LRARGAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc---CCEEEEEeCCHH--HHHHHHHH---HHHhcCCeEEEEecCCCChHHHHHHHHHH
Confidence 47899997 45699999999764 778888875432 22221110 00011235778999999988776531
Q ss_pred CCCccEEEEecC
Q 002475 720 LETFDSILILAD 731 (917)
Q Consensus 720 Ie~adavIilsd 731 (917)
.+..|.+|..+.
T Consensus 74 ~~~~d~vv~~ag 85 (243)
T PRK07102 74 PALPDIVLIAVG 85 (243)
T ss_pred hhcCCEEEECCc
Confidence 234588887654
No 422
>PRK09242 tropinone reductase; Provisional
Probab=39.18 E-value=90 Score=33.16 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=53.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.+ ..|..+++.|.+. |.+++++...+ +..+.+.+. + ....++.++.++.+|.++++.++++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~---G~~v~~~~r~~--~~~~~~~~~-l-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL---GADVLIVARDA--DALAQARDE-L-AEEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H-HhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4678899874 5699999999764 77888887542 333332220 0 0012345678899999998765431
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.++.
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 13467888888764
No 423
>PRK07576 short chain dehydrogenase; Provisional
Probab=39.10 E-value=2.3e+02 Score=30.32 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=50.2
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHH--HHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKERE--KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~--~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..|++++..+++... +.+.. . +..+.++.+|.++++.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~-------~-~~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA---GANVAVASRSQEKVDAAVAQLQQ-------A-GPEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH-------h-CCceEEEECCCCCHHHHHHHH
Confidence 5689999985 5599999999754 7888888754332111 11111 1 12356789999998877653
Q ss_pred -----CCCCccEEEEecC
Q 002475 719 -----PLETFDSILILAD 731 (917)
Q Consensus 719 -----~Ie~adavIilsd 731 (917)
.....|.+|-.+.
T Consensus 78 ~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1235688886653
No 424
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.10 E-value=84 Score=35.00 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=51.7
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCCh--HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~--~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.+.++|.|.+. .|..+++.|.+. |..|+++..... ++..+.+.+ ..++..+.++..|.++.+..+++-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~---G~~Vil~~R~~~~~~~~~~~l~~------~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA---GAEVILPVRNRAKGEAAVAAIRT------AVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHH------hCCCCceEEEEecCCCHHHHHHHH
Confidence 46899999865 499999999764 788888875422 111222221 112345778999999988775431
Q ss_pred ------CCCccEEEEecC
Q 002475 720 ------LETFDSILILAD 731 (917)
Q Consensus 720 ------Ie~adavIilsd 731 (917)
....|.+|-.+.
T Consensus 85 ~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 85 EQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHhCCCccEEEECCc
Confidence 245787776654
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.09 E-value=70 Score=33.87 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=52.7
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.+ ..|..+++.|.+. |..|++++..+. ..+.+.+. + .. .+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA---GADVVLAARTAE--RLDEVAAE-I--DD-LGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHH-H--HH-hCCceEEEecCCCCHHHHHHHHHH
Confidence 4689999985 4599999999864 788888875432 22222210 0 00 123467889999999877542
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 76 ~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHcCCccEEEECCcc
Confidence 12467888887753
No 426
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=39.07 E-value=4.2e+02 Score=30.46 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=24.8
Q ss_pred cccccccccCCCCChhHHHHhhhheeeccCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 002475 254 NFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV 309 (917)
Q Consensus 254 ~~~~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~ll~ll~~~l~lil~g~~~~~~~ 309 (917)
.|+......++++.-.+-+. .+.|.||..++.-++.- ++=++++|.++|+.+
T Consensus 106 G~~fs~k~l~Pk~~rlNPi~-G~KriFS~~~l~el~Ks---llK~~~i~~v~~~~~ 157 (347)
T TIGR00328 106 GFLFTTKPLKPKFSKINPIK-GLKRLFSLQSLVELLKS---LLKVFLVSFVAYFVL 157 (347)
T ss_pred CcccccccCCCChhhcCHHH-HHHHhcCHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34455555555443333222 34556676665444433 333445555555443
No 427
>PRK12746 short chain dehydrogenase; Provisional
Probab=38.94 E-value=1.1e+02 Score=32.25 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=50.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVL-id~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA---- 456 (917)
+.++|.|.+. .+..++++|.+. +..|++ ..++.+..+....... -.+..+.++.+|.++++.+.++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~------G~~v~i~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLAND------GALVAIHYGRNKQAADETIREIE--SNGGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHH--hcCCcEEEEEcCcCCHHHHHHHHHHH
Confidence 5788998765 578888888753 455655 4566655544433221 0123577899999999987664
Q ss_pred --------CcccccEEEEecCC
Q 002475 457 --------SVSKARAIIVLASD 470 (917)
Q Consensus 457 --------gI~~A~aVIilt~d 470 (917)
+....+.+|-++.-
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHhccccCCCCccEEEECCCC
Confidence 11256777766543
No 428
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.90 E-value=2.5e+02 Score=30.33 Aligned_cols=81 Identities=15% Similarity=0.055 Sum_probs=52.0
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..|+++...+ ++...+.+. + .. .+..+.++++|.++++.++++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~---G~~V~~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA---GFPVALGARRV--EKCEELVDK-I--RA-DGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999974 4599999999764 77887776533 222222110 0 00 123467789999999988642
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 81 AEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 13467888888764
No 429
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=38.89 E-value=40 Score=37.62 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEEEecc-chHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCcc----EEEEEECCCCHHHHhcc-Cc
Q 002475 385 ILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTS----VICRSGSPLILADLKKV-SV 458 (917)
Q Consensus 385 III~G~g-~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~----V~~i~Gd~~d~e~L~rA-gI 458 (917)
|+|.|.+ ..|..++++|...+ ...+++.|.++..+-.+..++...+.+.+ +.++.||..|.+.|.++ .-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~-----p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYG-----PKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcC-----CCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence 5677655 56899999998643 35789999998776655444311111222 34568888888888776 33
Q ss_pred ccccEEEEecC
Q 002475 459 SKARAIIVLAS 469 (917)
Q Consensus 459 ~~A~aVIilt~ 469 (917)
.+.|.|+=++.
T Consensus 76 ~~pdiVfHaAA 86 (293)
T PF02719_consen 76 YKPDIVFHAAA 86 (293)
T ss_dssp -T-SEEEE---
T ss_pred cCCCEEEEChh
Confidence 36666665553
No 430
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.75 E-value=50 Score=37.03 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=31.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l 428 (917)
+|.|+|.|..+..+...|... ++.|.+++++++.++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~~~~~i~ 40 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK------KISVNLWGRNHTTFESIN 40 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHHHHHHHH
Confidence 689999999999999888753 578889998887766553
No 431
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=38.71 E-value=5e+02 Score=29.83 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=24.8
Q ss_pred cccccccccCCCCChhHHHHhhhheeeccCchHHHHHHHHHHHHHHHHHHhhhhhh
Q 002475 254 NFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV 309 (917)
Q Consensus 254 ~~~~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~ll~ll~~~l~lil~g~~~~~~~ 309 (917)
.++......++++.-.+-+. .+.|.||..++.-++ -.++=++++|.++|+++
T Consensus 106 g~~fs~k~l~pk~~rlNP~~-GlKriFs~~~l~el~---Ksl~Kv~~~~~v~~~~~ 157 (349)
T PRK12721 106 GPLLASKAIGPKAEKINPVS-NAKQIFSLKSVFELC---KSLLKVVILSLIFAYLL 157 (349)
T ss_pred CceeccccCCCCchhcCHhH-hHHHhcCHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45555555555543333221 344556655543333 33444555666666554
No 432
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=38.64 E-value=1.1e+02 Score=32.22 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=47.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-- 457 (917)
.+.++|.|.+. .+..+++.|.+. +..|+++ .++++..+....... ..+.++.++.+|.++.+.++++-
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR------GWSVGINYARDAAAAEETADAVR--AAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHHHH--hcCCcEEEEEeccCCHHHHHHHHHH
Confidence 35789999876 577788888753 3455554 455544443332211 11335778888888887765431
Q ss_pred ----cccccEEEEecC
Q 002475 458 ----VSKARAIIVLAS 469 (917)
Q Consensus 458 ----I~~A~aVIilt~ 469 (917)
....+.+|.++.
T Consensus 74 ~~~~~~~id~li~~ag 89 (248)
T PRK06947 74 VQSAFGRLDALVNNAG 89 (248)
T ss_pred HHHhcCCCCEEEECCc
Confidence 234566666554
No 433
>PRK08226 short chain dehydrogenase; Provisional
Probab=38.64 E-value=96 Score=33.03 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=42.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.++++|.|.+. .+..+++.|.+. +..|++++.+.+. +....+.. ..+.++.++.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~------G~~Vv~~~r~~~~-~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH------GANLILLDISPEI-EKLADELC--GRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEecCCHHH-HHHHHHHH--HhCCceEEEECCCCCHHHHHHH
Confidence 46788888765 577888888753 5678888876542 22222111 0133567788888888877664
No 434
>PRK12827 short chain dehydrogenase; Provisional
Probab=38.64 E-value=1e+02 Score=32.21 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=49.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcC----ChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER----DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~----d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
.+.++|.|.+. .+..++++|... ++.|++++. +++..+....+.. ..+.++.++.+|..+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD------GADVIVLDIHPMRGRAEADAVAAGIE--AAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCeEEEEcCcccccHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHH
Confidence 35789998765 477788888753 456666543 3333333322211 1134678899999999888764
Q ss_pred C------cccccEEEEecC
Q 002475 457 S------VSKARAIIVLAS 469 (917)
Q Consensus 457 g------I~~A~aVIilt~ 469 (917)
- ....+.+|-.+.
T Consensus 78 ~~~~~~~~~~~d~vi~~ag 96 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAG 96 (249)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 2 134677777664
No 435
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.62 E-value=1.1e+02 Score=31.87 Aligned_cols=79 Identities=13% Similarity=0.133 Sum_probs=49.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
..+++|.|.+. .+..++++|.+. +..|++..++++..+....... . ..++.++.+|.++++.++++-
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNENKLKRMKKTLS-K--YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-h--cCCeEEEECCCCCHHHHHHHHHHH
Confidence 35889999866 577777887653 5678888887766554422211 0 124678889999988776531
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....+.+|....
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 123456665553
No 436
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.59 E-value=4.3e+02 Score=27.63 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=71.3
Q ss_pred cccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcc
Q 002475 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (917)
Q Consensus 380 ~~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~ 459 (917)
...+|++=+|.|. +.+.-|..... ....|+-+|.|++.++...+. .-+|.-.++.++.|++ ++.|. ++.
T Consensus 33 ~~g~~l~DIGaGt--Gsi~iE~a~~~----p~~~v~AIe~~~~a~~~~~~N-~~~fg~~n~~vv~g~A--p~~L~--~~~ 101 (187)
T COG2242 33 RPGDRLWDIGAGT--GSITIEWALAG----PSGRVIAIERDEEALELIERN-AARFGVDNLEVVEGDA--PEALP--DLP 101 (187)
T ss_pred CCCCEEEEeCCCc--cHHHHHHHHhC----CCceEEEEecCHHHHHHHHHH-HHHhCCCcEEEEeccc--hHhhc--CCC
Confidence 3456777778874 34444443222 356889999999877655332 2334456788999986 55666 455
Q ss_pred cccEEEEecCCCCCCcchHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHH----HHHcCC
Q 002475 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPL----VKLVGG 516 (917)
Q Consensus 460 ~A~aVIilt~d~~~~~sD~~Ni~~~Laar~l~p~~~~~IIA~v~d~e~~~~----l~~~Ga 516 (917)
+.|++++-... ....-+.+| ...+.| ..++|+.+...|+... ++..|.
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~--~~~l~~--ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAA--WERLKP--GGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHH--HHHcCc--CCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 99999998753 122223333 233455 3469988877776543 345666
No 437
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.58 E-value=84 Score=33.00 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc----
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 717 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~---- 717 (917)
.++++|.|. |..|..+++.|.+. |..+++++..+ ++.+.+.+. ... .+.++.++++|.++.+.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~---G~~vi~~~r~~--~~~~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK---GAKLALIDLNQ--EKLEEAVAE---CGA-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH---HHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 67799999999764 77788887543 222222110 001 12346678999999876643
Q ss_pred --CCCCCccEEEEecC
Q 002475 718 --LPLETFDSILILAD 731 (917)
Q Consensus 718 --a~Ie~adavIilsd 731 (917)
......|.+|-.++
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 11245788888775
No 438
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.57 E-value=69 Score=35.28 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=58.6
Q ss_pred CCCCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 641 KYPEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 641 ~~~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
...++++|-|-.. +|..+++.|.++ |..++++... ++|-+.+++. .+.-.+..+.++.-|-++++.++++-
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~---g~~liLvaR~--~~kL~~la~~---l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARR---GYNLILVARR--EDKLEALAKE---LEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCc--HHHHHHHHHH---HHHhhCceEEEEECcCCChhHHHHHH
Confidence 4567999999965 599999999865 8999999864 4565555541 11112456888999999998887643
Q ss_pred C------CCccEEEEecCC
Q 002475 720 L------ETFDSILILADE 732 (917)
Q Consensus 720 I------e~adavIilsd~ 732 (917)
- ...|.+|--++-
T Consensus 76 ~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 76 DELKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHHHhcCCcccEEEECCCc
Confidence 2 256766665554
No 439
>PRK05650 short chain dehydrogenase; Provisional
Probab=38.54 E-value=2.2e+02 Score=30.56 Aligned_cols=79 Identities=13% Similarity=0.000 Sum_probs=49.8
Q ss_pred eEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC----
Q 002475 645 KILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP---- 719 (917)
Q Consensus 645 hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~---- 719 (917)
+++|.|.+ ..|..++++|.+. |..++++...+ ++.+.+.+. + .. .+..+.++.+|.++++.++++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~---g~~V~~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE---GWRLALADVNE--EGGEETLKL-L--RE-AGGDGFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 68999985 5699999999764 78888877532 222211110 0 00 1234667899999988776531
Q ss_pred --CCCccEEEEecCC
Q 002475 720 --LETFDSILILADE 732 (917)
Q Consensus 720 --Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 73 ~~~~~id~lI~~ag~ 87 (270)
T PRK05650 73 EKWGGIDVIVNNAGV 87 (270)
T ss_pred HHcCCCCEEEECCCC
Confidence 2467888877653
No 440
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.49 E-value=1.4e+02 Score=30.56 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=25.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 384 HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
||+|+|.|-.+..+++.|.... -..++++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-----vg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-----VGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-----CCeEEEEeCCE
Confidence 6899999999999999998642 23577777765
No 441
>PRK05693 short chain dehydrogenase; Provisional
Probab=38.49 E-value=2.2e+02 Score=30.57 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=50.2
Q ss_pred CeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002475 644 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 718 (917)
Q Consensus 644 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 718 (917)
+.++|.|.+ ..|..+++.|.+. |..|++++..+ +..+.+.+. + +.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~~--------~--~~~~~~Dl~~~~~~~~~~~~~ 66 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA---GYEVWATARKA--EDVEALAAA--------G--FTAVQLDVNDGAALARLAEEL 66 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHC--------C--CeEEEeeCCCHHHHHHHHHHH
Confidence 478999985 4599999999754 78888887543 233333221 2 45679999998877543
Q ss_pred --CCCCccEEEEecCC
Q 002475 719 --PLETFDSILILADE 732 (917)
Q Consensus 719 --~Ie~adavIilsd~ 732 (917)
.....|.+|-.++.
T Consensus 67 ~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 67 EAEHGGLDVLINNAGY 82 (274)
T ss_pred HHhcCCCCEEEECCCC
Confidence 22467888888764
No 442
>PRK07201 short chain dehydrogenase; Provisional
Probab=38.37 E-value=97 Score=38.15 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=52.0
Q ss_pred eEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCC------HhHHhc
Q 002475 645 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI------RRHLES 717 (917)
Q Consensus 645 hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~------~~~L~~ 717 (917)
+|+|.|. |-.|..+++.|.+. ..|.+|+++...+..++...+.. .+...++.++.||.++ .+.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~-~~g~~V~~l~R~~~~~~~~~~~~------~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDR-RREATVHVLVRRQSLSRLEALAA------YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhc-CCCCEEEEEECcchHHHHHHHHH------hcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 5899998 66799999999742 34788888876443333332221 1111246788999988 356666
Q ss_pred CCCCCccEEEEecC
Q 002475 718 LPLETFDSILILAD 731 (917)
Q Consensus 718 a~Ie~adavIilsd 731 (917)
+ ..+|.||=++.
T Consensus 75 l--~~~D~Vih~Aa 86 (657)
T PRK07201 75 L--GDIDHVVHLAA 86 (657)
T ss_pred h--cCCCEEEECce
Confidence 5 78999987764
No 443
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.30 E-value=1.8e+02 Score=30.25 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEE-ccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II-~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 719 (917)
.++++|.|. |..|..+++.|.+. |.+++++ ...+. ....+.+. + .. .+.++.++.+|.++++.+.++-
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~---g~~v~~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE---GAKVVIAYDINEE--AAQELLEE-I--KE-EGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEcCCCHH--HHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHH
Confidence 358999998 46699999998754 7788887 65332 22222110 0 00 1234678899999998775531
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 1257888887754
No 444
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=38.29 E-value=86 Score=34.88 Aligned_cols=80 Identities=16% Similarity=0.032 Sum_probs=47.7
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC-cccc
Q 002475 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSKA 461 (917)
Q Consensus 384 HIII~G~-g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-I~~A 461 (917)
.++|.|. |-.+..++++|... ++.|++++...+......... ....+.++.++.||.++.+.+.++= -..+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN------GHDVVILDNLCNSKRSVLPVI-ERLGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC------CCeEEEEecCCCchHhHHHHH-HHhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 5899996 55688899999753 466776653211111111100 0111234678899999998877642 2358
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
+.||-++..
T Consensus 75 d~vvh~a~~ 83 (338)
T PRK10675 75 DTVIHFAGL 83 (338)
T ss_pred CEEEECCcc
Confidence 888887643
No 445
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=38.22 E-value=76 Score=37.23 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=49.8
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|..+..++..|... +...+.++.++.++.+.+.+++ .. +.....++|.+ -+.+|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~-----g~~~I~V~nRt~~ra~~La~~~----~~-------~~~~~~~~l~~-~l~~a 243 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL-----APKQIMLANRTIEKAQKITSAF----RN-------ASAHYLSELPQ-LIKKA 243 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHHHHh----cC-------CeEecHHHHHH-HhccC
Confidence 45799999999999999998753 2357889999887777665432 10 12223345533 36689
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||..|..
T Consensus 244 DiVI~aT~a 252 (414)
T PRK13940 244 DIIIAAVNV 252 (414)
T ss_pred CEEEECcCC
Confidence 999999976
No 446
>PRK12744 short chain dehydrogenase; Provisional
Probab=38.16 E-value=2.3e+02 Score=30.13 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=51.0
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCC--hHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p--~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.++++|.|.+. .|..+++.|.+. |..++++...+ ..+..+.+.+. + .. .+.++.++++|.++++.++++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~---G~~vv~i~~~~~~~~~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQ---GAKAVAIHYNSAASKADAEETVAA-V--KA-AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC---CCcEEEEecCCccchHHHHHHHHH-H--HH-hCCcEEEEecCcCCHHHHHHHH
Confidence 46899999754 599999999764 77766664321 11222222110 0 00 123467889999999887653
Q ss_pred -----CCCCccEEEEecCC
Q 002475 719 -----PLETFDSILILADE 732 (917)
Q Consensus 719 -----~Ie~adavIilsd~ 732 (917)
.....|.+|..+..
T Consensus 81 ~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHhhCCCCEEEECCcc
Confidence 23467888887764
No 447
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=38.16 E-value=66 Score=37.72 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=47.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|..+..+++.|... +...|++++.+.+..+....++ +. ..+ ..+++.+ .+..|
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~-----G~~~V~v~~rs~~ra~~la~~~-----g~--~~i-----~~~~l~~-~l~~a 241 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK-----GVGKILIANRTYERAEDLAKEL-----GG--EAV-----KFEDLEE-YLAEA 241 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHc-----CC--eEe-----eHHHHHH-HHhhC
Confidence 46899999999988888888642 1267888898877665554332 11 111 2234443 24689
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||.+++.
T Consensus 242 DvVi~aT~s 250 (417)
T TIGR01035 242 DIVISSTGA 250 (417)
T ss_pred CEEEECCCC
Confidence 999999866
No 448
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=38.14 E-value=25 Score=32.66 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~ 678 (917)
..++++|+|+|+.+..-++.|.+ .|..+++++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~---~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE---AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC---CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEECCc
Confidence 35799999999999988888864 48899999965
No 449
>PRK07069 short chain dehydrogenase; Validated
Probab=38.13 E-value=1.1e+02 Score=32.11 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=44.2
Q ss_pred EEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCC-hHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC-----
Q 002475 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (917)
Q Consensus 385 III~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d-~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg----- 457 (917)
++|.|.+. .+..+++.|... +..|++++.+ ++..+...+++........+.++.+|.++++.++++=
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQ------GAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD 75 (251)
T ss_pred EEEECCCChHHHHHHHHHHHC------CCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH
Confidence 68888665 578888888753 4577777765 4444443322110001122445677888877765431
Q ss_pred -cccccEEEEecC
Q 002475 458 -VSKARAIIVLAS 469 (917)
Q Consensus 458 -I~~A~aVIilt~ 469 (917)
....+.+|-.+.
T Consensus 76 ~~~~id~vi~~ag 88 (251)
T PRK07069 76 AMGGLSVLVNNAG 88 (251)
T ss_pred HcCCccEEEECCC
Confidence 123466665553
No 450
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=38.12 E-value=4.6e+02 Score=30.57 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=28.0
Q ss_pred cccccccccCCCCChhHHHHhhhheeeccCchHHHHHHHHHHHHHHHHHHhhhhhhc
Q 002475 254 NFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVS 310 (917)
Q Consensus 254 ~~~~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~ll~ll~~~l~lil~g~~~~~~~e 310 (917)
-|+......+++++-.+-+. .+.|.||...+.-++. .++=++++|+++|+.+.
T Consensus 113 G~~~s~k~l~P~~~rlNP~~-GlKriFS~~~l~el~K---sllKv~li~~v~~~~~~ 165 (386)
T PRK12468 113 GVLFSGESIKFDLKRMSPVA-GLKRMFSSQALAELLK---AILKATLVGWVTGLFLW 165 (386)
T ss_pred CceeccccCCCCchhcCHHH-HHHHhccHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45555566565554444333 4556677666544333 34445556666666543
No 451
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=38.07 E-value=1.5e+02 Score=33.37 Aligned_cols=75 Identities=28% Similarity=0.262 Sum_probs=44.9
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEE--CCCCHHHHhccCccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSG--SPLILADLKKVSVSK 460 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~G--d~~d~e~L~rAgI~~ 460 (917)
++|.|+|.|-.|..+...|.++ +++|++.-+++. ++.+.+. +..+....| .......-.......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~~-~~~l~~~------GL~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSRR-LEALKKK------GLRIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHHH-HHHHHhC------CeEEecCCCccccccccccChhhcCC
Confidence 4789999999999999999764 368888877664 4443221 222222222 111222222334458
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
+|.+|+.+..
T Consensus 68 ~Dlviv~vKa 77 (307)
T COG1893 68 ADLVIVTVKA 77 (307)
T ss_pred CCEEEEEecc
Confidence 9999998854
No 452
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=38.06 E-value=89 Score=38.82 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 720 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~I 720 (917)
.++|+|.|. |-.|..+++.|.+. .++.+|+.++..+..+....+... .....+.++.||.++.+.+.++ ..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~~------~~~~~v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNPS------KSSPNFKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhhc------ccCCCeEEEECCCCChHHHHHHHhh
Confidence 468999998 67799999999865 235778777642111111111110 0112467899999998887764 34
Q ss_pred CCccEEEEecCC
Q 002475 721 ETFDSILILADE 732 (917)
Q Consensus 721 e~adavIilsd~ 732 (917)
..+|.||=++..
T Consensus 79 ~~~D~ViHlAa~ 90 (668)
T PLN02260 79 EGIDTIMHFAAQ 90 (668)
T ss_pred cCCCEEEECCCc
Confidence 679999988764
No 453
>PRK06841 short chain dehydrogenase; Provisional
Probab=38.05 E-value=1.8e+02 Score=30.66 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=51.6
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|. |..|..+++.|.+. |..+++++..+. ..+...+ +.+..+..+..|.++++.++++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~---G~~Vi~~~r~~~--~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~ 82 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK---GARVALLDRSED--VAEVAAQ-------LLGGNAKGLVCDVSDSQSVEAAVAA 82 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHH-------hhCCceEEEEecCCCHHHHHHHHHH
Confidence 468999997 55699999999764 778888875432 2222221 12223557899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 83 ~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 83 VISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2367888887764
No 454
>PRK05866 short chain dehydrogenase; Provisional
Probab=37.96 E-value=80 Score=34.77 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=52.4
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+ ..|..+++.|.+. |..|++++..+ ++.+.+.+. ... .+..+.++.+|.+|.+.+.++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~---G~~Vi~~~R~~--~~l~~~~~~---l~~-~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR---GATVVAVARRE--DLLDAVADR---ITR-AGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHH---HHh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 3689999984 5599999999764 78888887643 232222210 000 123466789999998866543
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.++.
T Consensus 111 ~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 111 VEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23477888887754
No 455
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=37.89 E-value=73 Score=37.41 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=47.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcccc
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A 461 (917)
..+++|+|.|..+..+++.|... +...|++++.+++..+....++ +. +....+++.+ .+..|
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-----G~~~V~v~~r~~~ra~~la~~~-----g~-------~~~~~~~~~~-~l~~a 243 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-----GVRKITVANRTLERAEELAEEF-----GG-------EAIPLDELPE-ALAEA 243 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-----CCCeEEEEeCCHHHHHHHHHHc-----CC-------cEeeHHHHHH-HhccC
Confidence 46899999999988888888642 1247888898887766554432 11 1223345543 25689
Q ss_pred cEEEEecCC
Q 002475 462 RAIIVLASD 470 (917)
Q Consensus 462 ~aVIilt~d 470 (917)
|.||.++..
T Consensus 244 DvVI~aT~s 252 (423)
T PRK00045 244 DIVISSTGA 252 (423)
T ss_pred CEEEECCCC
Confidence 999999875
No 456
>PRK06125 short chain dehydrogenase; Provisional
Probab=37.81 E-value=2.1e+02 Score=30.37 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=51.7
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~ 719 (917)
.+.++|.|.+ ..|..+++.|.+. |..|++++..+ ++.+.+.+. .....+.++.++.+|.++++.++++ .
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~~---l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAE---GCHLHLVARDA--DALEALAAD---LRAAHGVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH---HHhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4688999985 4599999999764 77888887543 222222110 0001123466789999998876542 1
Q ss_pred CCCccEEEEecCC
Q 002475 720 LETFDSILILADE 732 (917)
Q Consensus 720 Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 79 ~g~id~lv~~ag~ 91 (259)
T PRK06125 79 AGDIDILVNNAGA 91 (259)
T ss_pred hCCCCEEEECCCC
Confidence 3467888877653
No 457
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.79 E-value=1.4e+02 Score=33.21 Aligned_cols=40 Identities=30% Similarity=0.144 Sum_probs=32.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l 428 (917)
.+|.|+|.|..+..++..|... ++.|.+.+.+++..+...
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~ 41 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQAAEIN 41 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHH
Confidence 3699999999999999998753 578899999887766554
No 458
>PRK07023 short chain dehydrogenase; Provisional
Probab=37.68 E-value=83 Score=33.12 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=40.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~r 455 (917)
++++|.|.+. .+..++++|.+. +..|+++..+++. ..... .+.++.++.+|.++.+.+++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~------G~~v~~~~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~~ 62 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP------GIAVLGVARSRHP--SLAAA-----AGERLAEVELDLSDAAAAAA 62 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC------CCEEEEEecCcch--hhhhc-----cCCeEEEEEeccCCHHHHHH
Confidence 3689999865 577888888642 5667777765432 11111 13457788999999888877
No 459
>PRK06197 short chain dehydrogenase; Provisional
Probab=37.62 E-value=1.7e+02 Score=32.21 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=53.1
Q ss_pred CCCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002475 642 YPEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (917)
Q Consensus 642 ~~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 718 (917)
..+.++|.|.+ ..|..+++.|.+. |..++++...+ ++.+...+. + ....++..+.++.+|.++.+.++++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~---G~~vi~~~r~~--~~~~~~~~~-l-~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAK---GAHVVLAVRNL--DKGKAAAAR-I-TAATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H-HHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 34689999985 4599999999864 77888877542 222211110 0 0011234567889999999877653
Q ss_pred ----CCCCccEEEEecCC
Q 002475 719 ----PLETFDSILILADE 732 (917)
Q Consensus 719 ----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 88 ~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 88 ALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHhhCCCCCEEEECCcc
Confidence 23467888887753
No 460
>PRK05855 short chain dehydrogenase; Validated
Probab=37.34 E-value=94 Score=37.26 Aligned_cols=81 Identities=11% Similarity=0.040 Sum_probs=51.8
Q ss_pred ccCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC--
Q 002475 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (917)
Q Consensus 381 ~~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg-- 457 (917)
..++++|.|.+. .|..++++|... +..|++++.+++..+...+... ..+.++.++.+|.++++.++++-
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~ 385 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFARE------GAEVVASDIDEAAAERTAELIR--AAGAVAHAYRVDVSDADAMEAFAEW 385 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 356889998765 578888998753 5678888888766555433220 11335778888888888776531
Q ss_pred ----cccccEEEEecC
Q 002475 458 ----VSKARAIIVLAS 469 (917)
Q Consensus 458 ----I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 386 ~~~~~g~id~lv~~Ag 401 (582)
T PRK05855 386 VRAEHGVPDIVVNNAG 401 (582)
T ss_pred HHHhcCCCcEEEECCc
Confidence 113455555543
No 461
>PLN02602 lactate dehydrogenase
Probab=37.33 E-value=2.4e+02 Score=32.41 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=45.8
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcc--ccCCccEEEEEECCCCHHHHhccCccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVSK 460 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~--~~~~~~V~~i~Gd~~d~e~L~rAgI~~ 460 (917)
.+|.|+|.|..+..++-.|...+ -...++|+|.+++.++....++.+ .+.+. + -+.+. .+.++ +++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~----l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~-~-~i~~~-~dy~~-----~~d 105 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD----LADELALVDVNPDKLRGEMLDLQHAAAFLPR-T-KILAS-TDYAV-----TAG 105 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CCCEEEEEeCCCchhhHHHHHHHhhhhcCCC-C-EEEeC-CCHHH-----hCC
Confidence 59999999998888887776421 235788999876544333222211 11111 2 23332 22333 668
Q ss_pred ccEEEEecCC
Q 002475 461 ARAIIVLASD 470 (917)
Q Consensus 461 A~aVIilt~d 470 (917)
||.||++++.
T Consensus 106 aDiVVitAG~ 115 (350)
T PLN02602 106 SDLCIVTAGA 115 (350)
T ss_pred CCEEEECCCC
Confidence 8999998776
No 462
>PRK08177 short chain dehydrogenase; Provisional
Probab=37.31 E-value=78 Score=32.97 Aligned_cols=73 Identities=21% Similarity=0.081 Sum_probs=44.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc---
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI--- 458 (917)
++++|.|... .+..++++|... +..|++++++++..+.. .+. .++.+..+|.++++.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~-~~~------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER------GWQVTATVRGPQQDTAL-QAL------PGVHIEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC------CCEEEEEeCCCcchHHH-Hhc------cccceEEcCCCCHHHHHHHHHHhh
Confidence 4688998665 577788888752 56788888776554432 211 245567778877776654311
Q ss_pred -ccccEEEEec
Q 002475 459 -SKARAIIVLA 468 (917)
Q Consensus 459 -~~A~aVIilt 468 (917)
...+.+|..+
T Consensus 69 ~~~id~vi~~a 79 (225)
T PRK08177 69 GQRFDLLFVNA 79 (225)
T ss_pred cCCCCEEEEcC
Confidence 2355555554
No 463
>PRK07041 short chain dehydrogenase; Provisional
Probab=37.25 E-value=91 Score=32.40 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc--Cccccc
Q 002475 386 LILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SVSKAR 462 (917)
Q Consensus 386 II~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA--gI~~A~ 462 (917)
+|.|.+. .+..++++|.+. +..|+++.++++..+....... .+.++.++.+|.++++.++++ .+...+
T Consensus 1 lItGas~~iG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE------GARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4667665 477788888753 5678888888766655433221 134577889999999988774 223456
Q ss_pred EEEEecC
Q 002475 463 AIIVLAS 469 (917)
Q Consensus 463 aVIilt~ 469 (917)
.+|-.+.
T Consensus 72 ~li~~ag 78 (230)
T PRK07041 72 HVVITAA 78 (230)
T ss_pred EEEECCC
Confidence 6666554
No 464
>PRK07806 short chain dehydrogenase; Provisional
Probab=37.24 E-value=1.1e+02 Score=32.19 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=46.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
..++|.|.+. .+..++++|... ++.|+++.++. +..+....++.. .+.++.++.+|.++++.++++-
T Consensus 7 k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4688999754 578888888753 45676665543 233322221110 1235778899999998876531
Q ss_pred ---cccccEEEEec
Q 002475 458 ---VSKARAIIVLA 468 (917)
Q Consensus 458 ---I~~A~aVIilt 468 (917)
....|.+|..+
T Consensus 79 ~~~~~~~d~vi~~a 92 (248)
T PRK07806 79 REEFGGLDALVLNA 92 (248)
T ss_pred HHhCCCCcEEEECC
Confidence 12456666555
No 465
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=37.17 E-value=90 Score=35.16 Aligned_cols=78 Identities=21% Similarity=0.118 Sum_probs=49.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCcc-c
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-K 460 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~-~ 460 (917)
++++|.|.+. .|..+++.|.+. ++.|+.+++++........... ...++.++.||.++.+.+.++=-+ +
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL------GAEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC------CCEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcC
Confidence 5799999754 688888888753 4677777765543222111110 022466789999999988764211 4
Q ss_pred ccEEEEecC
Q 002475 461 ARAIIVLAS 469 (917)
Q Consensus 461 A~aVIilt~ 469 (917)
.+.||-++.
T Consensus 76 ~d~vih~A~ 84 (349)
T TIGR02622 76 PEIVFHLAA 84 (349)
T ss_pred CCEEEECCc
Confidence 577777764
No 466
>PRK03612 spermidine synthase; Provisional
Probab=37.12 E-value=2.8e+02 Score=33.55 Aligned_cols=81 Identities=22% Similarity=0.229 Sum_probs=52.6
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhcc------ccCCccEEEEEECCCCHHHHh
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF------DFMGTSVICRSGSPLILADLK 454 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~------~~~~~~V~~i~Gd~~d~e~L~ 454 (917)
...+|+++|.|. +.+++++.+. .....|+++|.|++.++...+...+ .+.+.++.++.||+.+ -++
T Consensus 297 ~~~rVL~IG~G~--G~~~~~ll~~----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~ 368 (521)
T PRK03612 297 RPRRVLVLGGGD--GLALREVLKY----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLR 368 (521)
T ss_pred CCCeEEEEcCCc--cHHHHHHHhC----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHH
Confidence 356899999996 4456666542 1125899999999887765431111 1234578899999864 244
Q ss_pred ccCcccccEEEEecCC
Q 002475 455 KVSVSKARAIIVLASD 470 (917)
Q Consensus 455 rAgI~~A~aVIilt~d 470 (917)
+. -++.|.||+...+
T Consensus 369 ~~-~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 KL-AEKFDVIIVDLPD 383 (521)
T ss_pred hC-CCCCCEEEEeCCC
Confidence 33 2578999887654
No 467
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.10 E-value=2.6e+02 Score=29.69 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=51.3
Q ss_pred CCeEEEEccccC-HHHHHHHHHHhcCCCCeEEEEccCChHHHH-HHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002475 643 PEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 643 ~~hilI~Gwg~~-~~~li~~L~~~~~~g~~i~II~~~p~~Er~-~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 719 (917)
.+.++|.|.+.. |..+++.|.+. |..++++......+.. +.+.+ . +.++.++.+|.++++.++++-
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA---GADIIITTHGTNWDETRRLIEK-------E-GRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCcHHHHHHHHHHh-------c-CCceEEEEcCCCCHHHHHHHHH
Confidence 468999998654 99999999764 7888888654221222 22222 1 224678899999988765421
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2356888877654
No 468
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=36.94 E-value=3.1e+02 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=28.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~ 421 (917)
.+-||+|+|.|-.+..+++.|.... -..+.++|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-----Vg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-----IGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-----CCEEEEEeCCE
Confidence 4679999999999999999998653 24577777663
No 469
>PRK07201 short chain dehydrogenase; Provisional
Probab=36.89 E-value=96 Score=38.19 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=53.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC---
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg--- 457 (917)
.++++|.|.+. .|..++++|... +..|++++.+++..+...++... .+.++.++.+|.++.+.++++=
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~ 442 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA------GATVFLVARNGEALDELVAEIRA--KGGTAHAYTCDLTDSAAVDHTVKDI 442 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888765 578888888753 56788888887766655443211 1345788889999988876541
Q ss_pred ---cccccEEEEecC
Q 002475 458 ---VSKARAIIVLAS 469 (917)
Q Consensus 458 ---I~~A~aVIilt~ 469 (917)
....|.+|-.+.
T Consensus 443 ~~~~g~id~li~~Ag 457 (657)
T PRK07201 443 LAEHGHVDYLVNNAG 457 (657)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566666554
No 470
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=36.87 E-value=1.1e+02 Score=29.66 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.2
Q ss_pred eEEEEccccCHHHHHHHHHHhcCCCC-eEEEEccC
Q 002475 645 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 678 (917)
Q Consensus 645 hilI~Gwg~~~~~li~~L~~~~~~g~-~i~II~~~ 678 (917)
+++|+|-|..|..+++.|... |. .++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCC
Confidence 689999999999999999764 53 78998864
No 471
>PRK08226 short chain dehydrogenase; Provisional
Probab=36.85 E-value=2.1e+02 Score=30.43 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=51.3
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~-Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 719 (917)
.++++|.|.+. .|..+++.|.+. |..|++++..... +..+.+.. .+..+.++.+|.++++.++++-
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~---G~~Vv~~~r~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH---GANLILLDISPEIEKLADELCG--------RGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHH--------hCCceEEEECCCCCHHHHHHHHH
Confidence 46899999865 599999999764 7888888754211 11111211 1234667899999998776531
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
...-|.+|-.+..
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2356777776653
No 472
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.79 E-value=3.1e+02 Score=30.11 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=45.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCccccc
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI~~A~ 462 (917)
.+|-|+|+|..+..+++.|.... .+-..+.+.+.+++..+...+++ +.. .-..+.+.|. .++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~---~~~el~aV~dr~~~~a~~~a~~~-------g~~---~~~~~~eell----~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL---PGLTLSAVAVRDPQRHADFIWGL-------RRP---PPVVPLDQLA----THAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC---CCeEEEEEECCCHHHHHHHHHhc-------CCC---cccCCHHHHh----cCCC
Confidence 57999999999888888886421 11234557788887766554321 100 0124566663 4689
Q ss_pred EEEEecCC
Q 002475 463 AIIVLASD 470 (917)
Q Consensus 463 aVIilt~d 470 (917)
.|++++..
T Consensus 70 ~Vvi~tp~ 77 (271)
T PRK13302 70 IVVEAAPA 77 (271)
T ss_pred EEEECCCc
Confidence 99999965
No 473
>PRK12828 short chain dehydrogenase; Provisional
Probab=36.78 E-value=68 Score=33.32 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=49.6
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 719 (917)
.+.++|.|. |..|..+++.|.+. |..+++++.++.. +..+.+. ...+.++.+|.++.+.++++-
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR---GARVALIGRGAAPLSQTLPGVP----------ADALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC---CCeEEEEeCChHhHHHHHHHHh----------hcCceEEEeecCCHHHHHHHH
Confidence 467999987 56699999999764 7788888764422 1112121 122456789999988775431
Q ss_pred ------CCCccEEEEecC
Q 002475 720 ------LETFDSILILAD 731 (917)
Q Consensus 720 ------Ie~adavIilsd 731 (917)
....|.++-.+.
T Consensus 74 ~~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 74 DEVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHHhCCcCEEEECCc
Confidence 236788887765
No 474
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.69 E-value=70 Score=34.34 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCeEEEEcc---ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002475 643 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 718 (917)
Q Consensus 643 ~~hilI~Gw---g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 718 (917)
.+.++|.|. +..|..+++.|.+. |..+++.+....++..+.+.+ .+.. .+.++..|.++++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~---G~~v~l~~r~~~~~~~~~~~~------~~~~-~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ---GAEVVLTGFGRALRLTERIAK------RLPE-PAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC---CCEEEEecCccchhHHHHHHH------hcCC-CCcEEeCCCCCHHHHHHHH
Confidence 468999997 56799999999764 778888764322233333332 1122 345689999999876542
Q ss_pred -----CCCCccEEEEecC
Q 002475 719 -----PLETFDSILILAD 731 (917)
Q Consensus 719 -----~Ie~adavIilsd 731 (917)
.....|.+|-.+.
T Consensus 77 ~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHcCCCcEEEEccc
Confidence 2356788877664
No 475
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.66 E-value=96 Score=34.83 Aligned_cols=40 Identities=25% Similarity=0.072 Sum_probs=32.8
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l 428 (917)
++|.|+|.|..+..++..|... ++.|.+.+++++..+.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~~~~i~ 44 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEFAAALA 44 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHH
Confidence 4799999999999999998753 578999999887766553
No 476
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=36.58 E-value=1.1e+02 Score=33.23 Aligned_cols=82 Identities=23% Similarity=0.196 Sum_probs=51.3
Q ss_pred ccCeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhh---ccccCCccEEEEEECCCCHHHHhccC
Q 002475 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL---EFDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 381 ~~~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~---~~~~~~~~V~~i~Gd~~d~e~L~rAg 457 (917)
...+|+|+|.|. +.+++++.... ....|.++|.|++.++...+-+ ...+.+.++.++.+|+.. -|++..
T Consensus 76 ~p~~VLiiGgG~--G~~~~ell~~~----~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~l~~~~ 147 (246)
T PF01564_consen 76 NPKRVLIIGGGD--GGTARELLKHP----PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--FLKETQ 147 (246)
T ss_dssp ST-EEEEEESTT--SHHHHHHTTST----T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--HHHTSS
T ss_pred CcCceEEEcCCC--hhhhhhhhhcC----CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--HHHhcc
Confidence 467999999996 45677876432 1357889999998776543211 111345678888888643 355544
Q ss_pred cccccEEEEecCC
Q 002475 458 VSKARAIIVLASD 470 (917)
Q Consensus 458 I~~A~aVIilt~d 470 (917)
-++-|.||+-..+
T Consensus 148 ~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 EEKYDVIIVDLTD 160 (246)
T ss_dssp ST-EEEEEEESSS
T ss_pred CCcccEEEEeCCC
Confidence 3388888887765
No 477
>PRK06181 short chain dehydrogenase; Provisional
Probab=36.54 E-value=85 Score=33.43 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=50.4
Q ss_pred CeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002475 644 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 718 (917)
Q Consensus 644 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~--Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 718 (917)
+.++|.|. |..|..+++.|.+. |..|++++..+.+ +..+.+.. .+..+.++.+|.++++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~---g~~Vi~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~~ 70 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA---GAQLVLAARNETRLASLAQELAD--------HGGEALVVPTDVSDAEACERLIE 70 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEEEccCCCHHHHHHHHH
Confidence 46899999 45699999999753 7788888764321 11112211 122467789999998876553
Q ss_pred ----CCCCccEEEEecCC
Q 002475 719 ----PLETFDSILILADE 732 (917)
Q Consensus 719 ----~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 71 ~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 71 AAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 12357888877653
No 478
>PRK04148 hypothetical protein; Provisional
Probab=36.53 E-value=82 Score=31.08 Aligned_cols=69 Identities=12% Similarity=-0.036 Sum_probs=46.9
Q ss_pred CCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002475 643 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 643 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie~ 722 (917)
..+++.+|-| .|..++..|.+. |.+|+.+|.++ +..+...+. .+.++.+|..+.+.= --+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~ViaIDi~~--~aV~~a~~~----------~~~~v~dDlf~p~~~---~y~~ 77 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIVIDINE--KAVEKAKKL----------GLNAFVDDLFNPNLE---IYKN 77 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHh----------CCeEEECcCCCCCHH---HHhc
Confidence 4689999999 888889899764 88999999764 455555442 245688886654321 1346
Q ss_pred ccEEEEec
Q 002475 723 FDSILILA 730 (917)
Q Consensus 723 adavIils 730 (917)
||.|...-
T Consensus 78 a~liysir 85 (134)
T PRK04148 78 AKLIYSIR 85 (134)
T ss_pred CCEEEEeC
Confidence 67676653
No 479
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.23 E-value=1e+02 Score=32.70 Aligned_cols=79 Identities=9% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChH---HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~---Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 718 (917)
.+.++|.|.+. .|..+++.|.+. |..+++++..+.+ +..+.+.. .+.++.++.+|.++++.++++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~l~~--------~~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQA---GADVALFDLRTDDGLAETAEHIEA--------AGRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCcchHHHHHHHHHHh--------cCCceEEEEcCCCCHHHHHHH
Confidence 46889999865 499999999764 7888888754321 11222221 122456789999999877653
Q ss_pred C------CCCccEEEEecCC
Q 002475 719 P------LETFDSILILADE 732 (917)
Q Consensus 719 ~------Ie~adavIilsd~ 732 (917)
- ...-|.+|-.+..
T Consensus 77 ~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 1 2345888777653
No 480
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.21 E-value=1.2e+02 Score=31.99 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=49.1
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+ ..|..+++.|.+. |.+++++..... ++.+.+.+ .+. .++.++.+|.++++.++++=
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~---G~~vv~~~~~~~-~~~~~~~~------~~~-~~~~~~~~D~~~~~~~~~~~~~ 73 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFARE---GARVVVNYHQSE-DAAEALAD------ELG-DRAIALQADVTDREQVQAMFAT 73 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC---CCeEEEEcCCCH-HHHHHHHH------HhC-CceEEEEcCCCCHHHHHHHHHH
Confidence 3579999975 4599999999764 777877654322 23333322 112 24677899999988776531
Q ss_pred ----CC-CccEEEEecC
Q 002475 720 ----LE-TFDSILILAD 731 (917)
Q Consensus 720 ----Ie-~adavIilsd 731 (917)
.. ..|.+|-.+.
T Consensus 74 ~~~~~g~~id~li~~ag 90 (253)
T PRK08642 74 ATEHFGKPITTVVNNAL 90 (253)
T ss_pred HHHHhCCCCeEEEECCC
Confidence 11 2787777653
No 481
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=36.21 E-value=88 Score=37.66 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=22.3
Q ss_pred hhhhcCCCHHHHHHHHHHhhhccCCC
Q 002475 306 LYAVSDSSFAEALWLSWTFVADSGNH 331 (917)
Q Consensus 306 ~~~~e~~s~~dAly~~~~tvTTvGyg 331 (917)
.++..+++++||++.++.+++|-||-
T Consensus 191 ~~~~~gm~~~dAi~hs~Sa~~ngGFS 216 (499)
T COG0168 191 AFILAGMPLFDAIFHSMSAFNNGGFS 216 (499)
T ss_pred HHHhccCCHHHHHHHHHHHhhcCCCC
Confidence 33456789999999999999999994
No 482
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=36.11 E-value=1.2e+02 Score=31.82 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=49.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccCc-
Q 002475 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (917)
Q Consensus 382 ~~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAgI- 458 (917)
.++++|.|.+. .+..++++|... +..|++. ..+++..+...+... -.+.++.++..|.++++.+.++--
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE------GAKVVINYNSSKEAAENLVNELG--KEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc------CCEEEEEcCCcHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46888998765 577888888753 3455554 444444444333221 113457889999999988776411
Q ss_pred -----ccccEEEEecCC
Q 002475 459 -----SKARAIIVLASD 470 (917)
Q Consensus 459 -----~~A~aVIilt~d 470 (917)
...+.+|-++..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 235777666543
No 483
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.02 E-value=1.4e+02 Score=31.86 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=39.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~-e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
+.++|.|.+. .+..++++|.+. |..|++++.+. +.....++. .+.++.++.+|.++++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~------G~~vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKA------GADIVGVGVAEAPETQAQVEA-----LGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCchHHHHHHHHHH-----cCCeEEEEEeCCCCHHHHHHH
Confidence 4678888776 577888888753 56777776543 222222221 134577788888888877654
No 484
>PRK05872 short chain dehydrogenase; Provisional
Probab=35.90 E-value=2.9e+02 Score=30.31 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=52.1
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcC-CceEEEEEcCcCCHhHHhcC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESL-- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~-~~~v~~i~GD~t~~~~L~~a-- 718 (917)
.+.++|.|.+. .|..+++.|.+. |..+++++..+ ++.+.+.+ .+. +..+..+.+|.++++.++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~--~~l~~~~~------~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR---GAKLALVDLEE--AELAALAA------ELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------HhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 46899999855 599999999764 77888887543 33333322 111 23455677999999877553
Q ss_pred ----CCCCccEEEEecCC
Q 002475 719 ----PLETFDSILILADE 732 (917)
Q Consensus 719 ----~Ie~adavIilsd~ 732 (917)
.....|.+|-.++.
T Consensus 78 ~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 78 EAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 12467888887763
No 485
>PRK12742 oxidoreductase; Provisional
Probab=35.86 E-value=2.7e+02 Score=28.84 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred CCeEEEEcc-ccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C
Q 002475 643 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 719 (917)
Q Consensus 643 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~ 719 (917)
.+.++|.|. |..|..+++.|.+. |..+++.... .+++.+.+.+ .+ + +.++.+|.++++.+.++ .
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~---G~~v~~~~~~-~~~~~~~l~~------~~-~--~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD---GANVRFTYAG-SKDAAERLAQ------ET-G--ATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEecCC-CHHHHHHHHH------Hh-C--CeEEecCCCCHHHHHHHHHH
Confidence 468999998 46699999999764 7777776432 2233333322 11 1 34678999998766542 1
Q ss_pred CCCccEEEEecCC
Q 002475 720 LETFDSILILADE 732 (917)
Q Consensus 720 Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 73 ~~~id~li~~ag~ 85 (237)
T PRK12742 73 SGALDILVVNAGI 85 (237)
T ss_pred hCCCcEEEECCCC
Confidence 2357888877653
No 486
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.81 E-value=1.2e+02 Score=31.83 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=38.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhcc
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLi-d~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rA 456 (917)
+.++|.|.+. .+..+++.|.+. +..|+++ .++++..+...... +.++.++.+|.++++.++++
T Consensus 6 k~ilItGas~gIG~~la~~l~~~------G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFARE------GARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC------CCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHH
Confidence 4688888665 577788888653 4556655 34444444433221 23577788888887776654
No 487
>PRK06483 dihydromonapterin reductase; Provisional
Probab=35.68 E-value=3.4e+02 Score=28.28 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=50.5
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.++ .|..+++.|.+. |..+++++..+.+ ..+.+.+. + +.++.+|.++++.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~-~~~~~~~~--------~--~~~~~~D~~~~~~~~~~~~~ 67 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ---GQPVIVSYRTHYP-AIDGLRQA--------G--AQCIQADFSTNAGIMAFIDE 67 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC---CCeEEEEeCCchh-HHHHHHHc--------C--CEEEEcCCCCHHHHHHHHHH
Confidence 46899999865 599999999754 7888888765432 22223221 2 45689999998876542
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 68 ~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 68 LKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHhhCCCccEEEECCcc
Confidence 12357888877653
No 488
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.62 E-value=1.1e+02 Score=31.72 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=51.7
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~ 719 (917)
.++++|.|.+ ..|..+++.|.+. |.+++++...+. +.+.+.+. + .-.+.++.++.+|.++++.+.++ .
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~---g~~v~~~~r~~~--~~~~~~~~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD---GAKVVIYDSNEE--AAEALAAE-L---RAAGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCChh--HHHHHHHH-H---HhcCCceEEEEccCCCHHHHHHHHHH
Confidence 3589999984 5599999999864 777888876542 22222110 0 00123467789999999876542 1
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 76 ~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 76 AVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 2356888888754
No 489
>PRK12937 short chain dehydrogenase; Provisional
Probab=35.61 E-value=2.1e+02 Score=29.83 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=51.5
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.++++|.|.+ ..|..+++.|.+. |..++++..... +..+.+.+. ... .+.++.++..|.++.+.++++=
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~---g~~v~~~~~~~~-~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD---GFAVAVNYAGSA-AAADELVAE---IEA-AGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEecCCCH-HHHHHHHHH---HHh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999984 5599999999764 777777654322 222222110 001 1235778899999988775531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 77 AETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2467888887763
No 490
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=35.59 E-value=3.5e+02 Score=28.43 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=31.1
Q ss_pred eEEEEe-ccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH
Q 002475 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (917)
Q Consensus 384 HIII~G-~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~ 429 (917)
+|.|+| .|..+..++..|.+. ++.|++.+.+++..+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~ 42 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAA 42 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHH
Confidence 588997 799999999999753 4778888888877665543
No 491
>PRK06484 short chain dehydrogenase; Validated
Probab=35.42 E-value=1.1e+02 Score=36.63 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=51.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhccccCCccEEEEEECCCCHHHHhccC----
Q 002475 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (917)
Q Consensus 383 ~HIII~G~g~-~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~l~~~~~~~~~~~V~~i~Gd~~d~e~L~rAg---- 457 (917)
+.++|.|.+. .+..+++.|... +..|++++++.+.++....+. +.++.++..|.++++.++++=
T Consensus 6 k~~lITGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARA------GDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHH
Confidence 4577778776 477888888753 567888888877766654432 335678899999998876641
Q ss_pred --cccccEEEEecC
Q 002475 458 --VSKARAIIVLAS 469 (917)
Q Consensus 458 --I~~A~aVIilt~ 469 (917)
...-|.+|-.+.
T Consensus 75 ~~~g~iD~li~nag 88 (520)
T PRK06484 75 REFGRIDVLVNNAG 88 (520)
T ss_pred HHhCCCCEEEECCC
Confidence 124566766543
No 492
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=35.40 E-value=48 Score=39.13 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=29.6
Q ss_pred CCCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccC
Q 002475 641 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 678 (917)
Q Consensus 641 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~ 678 (917)
...++++|+|.|..|...+..|.+. |.++++++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~---g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK---GYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Confidence 4567999999999999999999764 7889999854
No 493
>PRK06179 short chain dehydrogenase; Provisional
Probab=35.05 E-value=68 Score=34.42 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=50.0
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+. .|..++++|.+. |..|+++...+. ... ... .+.++.+|.+|++.++++=
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~---g~~V~~~~r~~~--~~~----------~~~--~~~~~~~D~~d~~~~~~~~~~ 66 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA---GYRVFGTSRNPA--RAA----------PIP--GVELLELDVTDDASVQAAVDE 66 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCChh--hcc----------ccC--CCeeEEeecCCHHHHHHHHHH
Confidence 35799999854 599999999764 788888875432 111 112 2567899999998876631
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|..+..
T Consensus 67 ~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 67 VIARAGRIDVLVNNAGV 83 (270)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 2357888887764
No 494
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.99 E-value=2.2e+02 Score=30.36 Aligned_cols=80 Identities=8% Similarity=0.097 Sum_probs=52.1
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.+.++|.|.+. .|..+++.|.+. |.+|+++...+ +..+.+.+. ... .+.++.++.+|.++++.+.++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~---G~~Vi~~~r~~--~~~~~~~~~---l~~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA---GADVLIAARTE--SQLDEVAEQ---IRA-AGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH---HHh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 46789999865 699999999764 78888887643 222222210 000 123467789999999987652
Q ss_pred ---CCCCccEEEEecC
Q 002475 719 ---PLETFDSILILAD 731 (917)
Q Consensus 719 ---~Ie~adavIilsd 731 (917)
.....|.+|-.+.
T Consensus 81 ~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 81 AVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246788887665
No 495
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=34.99 E-value=1e+02 Score=32.46 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=50.3
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 718 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 718 (917)
.++++|.|.+. .|..+++.|.+. |..++++.... .+..+.+.+. ... .+.++.++.+|.++.+.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~---g~~v~~~~~~~-~~~~~~~~~~---~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR---GWSVGINYARD-AAAAEETADA---VRA-AGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC---CCEEEEEeCCC-HHHHHHHHHH---HHh-cCCcEEEEEeccCCHHHHHHHHHH
Confidence 46899999865 599999999764 67777654322 2222222110 000 122467889999998776542
Q ss_pred ---CCCCccEEEEecCC
Q 002475 719 ---PLETFDSILILADE 732 (917)
Q Consensus 719 ---~Ie~adavIilsd~ 732 (917)
.....|.+|-.+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 74 VQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHhcCCCCEEEECCcc
Confidence 13467888877764
No 496
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=34.87 E-value=96 Score=30.23 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=39.7
Q ss_pred CCCeEEEEccccCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002475 642 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 721 (917)
Q Consensus 642 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~Ie 721 (917)
..-+|-|+|-|+.|..+...|.+. |.+|.-+.... .+..+.+.. .++... . ..+.+. ++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~srs-~~sa~~a~~------~~~~~~-------~---~~~~~~-~~ 67 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSRS-PASAERAAA------FIGAGA-------I---LDLEEI-LR 67 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSCH-H-HHHHHHC--------TT---------------TTGG-GC
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCC-ccccccccc------cccccc-------c---cccccc-cc
Confidence 355999999999999999999864 78888886543 334444433 122211 1 112222 56
Q ss_pred CccEEEEecCC
Q 002475 722 TFDSILILADE 732 (917)
Q Consensus 722 ~adavIilsd~ 732 (917)
.||.+++...|
T Consensus 68 ~aDlv~iavpD 78 (127)
T PF10727_consen 68 DADLVFIAVPD 78 (127)
T ss_dssp C-SEEEE-S-C
T ss_pred cCCEEEEEech
Confidence 88988887654
No 497
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=34.84 E-value=1.3e+02 Score=35.16 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=33.5
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (917)
Q Consensus 383 ~HIII~G~g~~~~~li~eL~~~~~~~~~~~~VVLid~d~e~~e~~ 427 (917)
.+|-|+|.|..|..++..|... |+.|+..|.+++.++.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHHHHHHH
Confidence 5799999999999999999753 58899999999888764
No 498
>PRK05884 short chain dehydrogenase; Provisional
Probab=34.80 E-value=77 Score=33.26 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=48.4
Q ss_pred eEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--C-
Q 002475 645 KILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--L- 720 (917)
Q Consensus 645 hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--I- 720 (917)
+++|.|.+ ..|..+++.|.+. |..+++++.. +++.+.+.+ .+ .+.++.+|.++++.++++- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~---g~~v~~~~r~--~~~~~~~~~------~~---~~~~~~~D~~~~~~v~~~~~~~~ 67 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND---GHKVTLVGAR--RDDLEVAAK------EL---DVDAIVCDNTDPASLEEARGLFP 67 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC---CCEEEEEeCC--HHHHHHHHH------hc---cCcEEecCCCCHHHHHHHHHHHh
Confidence 58899884 5699999999754 7888888753 234443332 11 2356789999998876541 1
Q ss_pred CCccEEEEecC
Q 002475 721 ETFDSILILAD 731 (917)
Q Consensus 721 e~adavIilsd 731 (917)
+..|.+|-.+.
T Consensus 68 ~~id~lv~~ag 78 (223)
T PRK05884 68 HHLDTIVNVPA 78 (223)
T ss_pred hcCcEEEECCC
Confidence 25788776653
No 499
>PRK08628 short chain dehydrogenase; Provisional
Probab=34.79 E-value=1.2e+02 Score=32.23 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=51.6
Q ss_pred CCeEEEEccc-cCHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002475 643 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 719 (917)
Q Consensus 643 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~i~II~~~p~~-Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 719 (917)
.+.++|.|.+ ..|..+++.|.+. |..++++...+.. +..+.+.+ .+..+.++.+|.++++.++++=
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~ 75 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEE---GAIPVIFGRSAPDDEFAEELRA--------LQPRAEFVQVDLTDDAQCRDAVE 75 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc---CCcEEEEcCChhhHHHHHHHHh--------cCCceEEEEccCCCHHHHHHHHH
Confidence 4688999975 4699999999764 7778877654322 11122221 1224678899999998776521
Q ss_pred -----CCCccEEEEecCC
Q 002475 720 -----LETFDSILILADE 732 (917)
Q Consensus 720 -----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 76 QTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHhcCCCCEEEECCcc
Confidence 1357888888763
No 500
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=34.68 E-value=1.3e+02 Score=31.92 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=51.9
Q ss_pred CCeEEEEcccc-CHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002475 643 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 719 (917)
Q Consensus 643 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~i~II~~~p~~Er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 719 (917)
.+.++|.|.+. .|..+++.|.+. |.++++++..+. +...+.+. ... .+.++..+.+|.++++.++++-
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~---G~~vvl~~r~~~--~~~~~~~~---l~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY---GAEIIINDITAE--RAELAVAK---LRQ-EGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc---CCEEEEEcCCHH--HHHHHHHH---HHh-cCCeEEEEecCCCCHHHHHHHHHH
Confidence 46799999854 599999999764 788888876432 22222110 000 1234567899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002475 720 ----LETFDSILILADE 732 (917)
Q Consensus 720 ----Ie~adavIilsd~ 732 (917)
....|.+|-.+..
T Consensus 80 ~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 80 IEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 2457888887753
Done!