Query 002475
Match_columns 917
No_of_seqs 351 out of 2881
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:12:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002475.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1196-1200//hhsearch_pdb/002475hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gx0_A TRKA domain protein; me 1.0 1 1 495.1 34.9 527 274-917 7-549 (565)
2 3naf_A Calcium-activated potas 1.0 1 1 406.5 46.7 551 343-916 15-740 (798)
3 4g65_A TRK system potassium up 1.0 1 1 368.0 26.3 430 382-915 3-442 (461)
4 4hpf_A Potassium channel subfa 1.0 1 1 366.3 31.9 491 381-915 2-689 (722)
5 3mt5_A Potassium large conduct 1.0 1 1 360.3 41.3 516 381-916 2-716 (726)
6 1lnq_A MTHK channels, potassiu 1.0 1 1 327.7 10.6 298 293-620 25-329 (336)
7 3mt5_A Potassium large conduct 1.0 1 1 213.0 20.8 227 642-916 2-262 (726)
8 3naf_A Calcium-activated potas 1.0 1 1 207.8 24.0 230 640-916 50-312 (798)
9 4gx0_A TRKA domain protein; me 1.0 1 1 201.7 10.9 206 383-623 349-556 (565)
10 2aef_A Calcium-gated potassium 1.0 1 1 196.7 18.4 219 374-621 1-224 (234)
No 1
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=495.09 Aligned_cols=527 Identities=15% Similarity=0.168 Sum_probs=409.3
Q ss_pred HHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH----HCC--CCHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEEEHH
Q ss_conf 54201002470699999999999999998755352----137--99889999999765246788876-896590354403
Q 002475 274 YSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYA----VSD--SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSI 346 (917)
Q Consensus 274 y~ld~~~s~~~~~~ll~l~~~~l~lil~g~~~~~~----~e~--~s~~dAly~~~~titTvGygd~~-~t~~gRi~~v~i 346 (917)
|.+.+. ....++.++..++++++++++++++|++ +|+ ++|+|||||+++|+||+||||.. .+..+|+|++++
T Consensus 7 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~ 85 (565)
T 4gx0_A 7 YFLRGR-ARQNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIV 85 (565)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHH
T ss_pred EEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 105100-3666999999999999999999999999997635888765523222346664106877677982189999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHH-HHH----HHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 36568999999999-99999998-874----3048641000371899912404999999999820027999269999599
Q 002475 347 SSGGMLIFAMMLGL-VSDAISEK-VDS----LRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (917)
Q Consensus 347 il~Gi~ifa~lig~-i~~~i~~~-~~~----lr~G~~~v~~~~HiIIlG~g~~~~~li~eL~~~~~~~~~~~iVVLid~d 420 (917)
+++|+++++++++. +++.+... +++ .+.++.....++|+||||||+.+..++++|... ++.|+++|.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~g~~g~~la~~L~~~------~~~vvvid~~ 159 (565)
T 4gx0_A 86 TVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFGIDPITRTLIRKLESR------NHLFVVVTDN 159 (565)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESCCHHHHHHHHHTTTT------TCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC
T ss_conf 9999999999988999999999999999875041235444587299988886899999999977------9989999799
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 37899999721013588618999977899888852685454579995389998710599999999995305998743999
Q 002475 421 KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVV 500 (917)
Q Consensus 421 ~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~i~~A~aIIilt~d~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa 500 (917)
++.++..... .++.++.||++++++|++|++++|+.+|+ +.+ |+.|+.+|+++|+++ . .+++|
T Consensus 160 ~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~------D~~n~~~~~~ar~~~-~--~~iia 222 (565)
T 4gx0_A 160 YDQALHLEEQ-------EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLS------DPDNANLCLTVRSLC-Q--TPIIA 222 (565)
T ss_dssp HHHHHHHHHS-------CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSC------HHHHHHHHHHHHTTC-C--CCEEE
T ss_pred HHHHHHHHHH-------CCCEEEEECCCCHHHHHHCCCCCCCEEEE-ECC------CHHHHHHHHHHHHHC-C--CEEEE
T ss_conf 9999999982-------39869996899989998569562799999-189------677899999999866-9--64999
Q ss_pred EECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH-HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-CCC
Q ss_conf 955999988898739983788540999999999997088579-999998327893499931896578758768410-999
Q 002475 501 EMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA-QIWEDILGFENAEFYIKRWPQLDDLRFEEVVIS-FPD 578 (917)
Q Consensus 501 ~v~d~e~~~~l~~~Gad~VevV~~~~l~a~lLa~~~~~Pgi~-~vl~~Ll~~eg~Ei~i~~~p~l~G~tl~el~~~-~~~ 578 (917)
++.++++.+.++.+|+|.| ++|+...++.|++.+..|+.. .++...-...-.|+.+. .+++.|++++|+..+ ..+
T Consensus 223 r~~~~~~~~~l~~~Gad~v--i~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l~el~~~~~~~ 299 (565)
T 4gx0_A 223 VVKEPVHGELLRLAGANQV--VPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTIGESGIRQRTG 299 (565)
T ss_dssp ECSSGGGHHHHHHHTCSEE--ECHHHHHHHHHHHHHHC------------------------------------------
T ss_pred EECCHHHHHHHHHCCCCEE--ECHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEEEC-CCCCCCCCHHHCCCCHHCC
T ss_conf 9788878999997699889--976999999999985166321101103678569999988-9855898989948421059
Q ss_pred EEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 19999999321992884899995231898999998189966889995101012444699999999709999045588999
Q 002475 579 AIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDM 658 (917)
Q Consensus 579 vivIGI~r~~~~g~v~lnP~~d~vL~~gD~LiVIa~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~hiLIiGw~~~~~~l 658 (917)
+.++|+.| +|+.. +|+++++|++||.++++|++++..++..... ...+. +|++|||||+.|..+
T Consensus 300 ~~vi~i~r---~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~-----------~~~~~-~~viIiG~G~~G~~l 363 (565)
T 4gx0_A 300 LSIIGVWE---RGSLT-TPQRETVLTEQSLLVLAGTKSQLAALEYLIG-----------EAPED-ELIFIIGHGRIGCAA 363 (565)
T ss_dssp --------------------------------------------------------------CC-CCEEEECCSHHHHHH
T ss_pred CEEEEEEE---CCEEE-CCCCCCEECCCCEEEEEECHHHHHHHHHHHC-----------CCCCC-CCEEEECCCHHHHHH
T ss_conf 79999998---99884-7999868679999999968999999999835-----------78889-988998988789999
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99999863999859999268737888885318987467678539999868488867833998885689993078876764
Q 002475 659 IMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSI 738 (917)
Q Consensus 659 i~~L~~~~~~g~~i~Ii~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~L~~a~ie~AdsvIilsd~~~~~~~ 738 (917)
+++|.+. |.++++++.++ ++++ ... .++.||+++++.|+++++++||.+|++++
T Consensus 364 a~~L~~~---g~~v~vid~d~--~~~~-------------~~~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~------- 417 (565)
T 4gx0_A 364 AAFLDRK---PVPFILIDRQE--SPVC-------------NDH-VVVYGDATVGQTLRQAGIDRASGIIVTTN------- 417 (565)
T ss_dssp HHHHHHT---TCCEEEEESSC--CSSC-------------CSS-CEEESCSSSSTHHHHHTTTSCSEEEECCS-------
T ss_pred HHHHHHC---CCCEEEEECCH--HHHH-------------HCC-CEEEECCCCHHHHHHCCCCCCCEEEEECC-------
T ss_conf 9999987---99789997886--8986-------------268-78990789989998649241399999779-------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCCCCEEECH
Q ss_conf 66719999999999874245789888998643345777622578864127762389998344211001003898378317
Q 002475 739 VHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSN 818 (917)
Q Consensus 739 ~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~s~~~~i~~l~~a~~~~~IvsEi~d~~~~~ll~~~g~~d~V~S~ 818 (917)
.|..|+++++.+|+++++ .+|++++.++++.+.++.+|++.+|.+.
T Consensus 418 --~d~~ni~~~~~ak~l~~~--------------------------------~~iiar~~~~~~~~~l~~~G~d~vi~p~ 463 (565)
T 4gx0_A 418 --DDSTNIFLTLACRHLHSH--------------------------------IRIVARANGEENVDQLYAAGADFVVSNA 463 (565)
T ss_dssp --CHHHHHHHHHHHHHHCSS--------------------------------SEEEEEESSTTSHHHHHHHTCSEEEEHH
T ss_pred --CCHHHHHHHHHHHHHCCC--------------------------------CEEEEEECCHHHHHHHHHCCCCEEECCC
T ss_conf --826799999999987899--------------------------------8799997887779999976998998140
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECC-CCCEEECCCC
Q ss_conf 899999999872011999999987146862999707532367987669989987226891999999679-9818978999
Q 002475 819 ELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLAN-TERAIINPSQ 897 (917)
Q Consensus 819 ~lvs~~lAq~a~~p~i~~vl~eLl~~eG~ei~i~~~~~~~~~~~~ltf~el~~~~~~~g~iiIGi~~~~-~~~~~inP~~ 897 (917)
.+.+..+++....+.+..+. ++.+++..+.+ ++-.+.+..++..+ ...|..++|+++.+ + +.++||.+
T Consensus 464 ~~~~~~i~~~~~~~~~~~~~------~~~~~~~v~~~---s~~~Gk~l~el~l~-~~~~~~v~aI~R~~~~-~~~~~p~~ 532 (565)
T 4gx0_A 464 SVGANILGNLLEHKESAFLS------EGMAVFRRPLP---PAMAGKTIAETRLR-PLTGCSIVAIEAPDRA-DILISPPP 532 (565)
T ss_dssp HHHHHHHHHHHHCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCHHHHHHH------CCEEEEEECCC---CCCCCCCHHHCCHH-HHCCCEEEEEEECCCC-CEEECCCC
T ss_conf 07999999973564450351------57299997289---87588888991336-6529789999967999-55889699
Q ss_pred CCCCCEECCCCEEEEEECCC
Q ss_conf 99997132899999996289
Q 002475 898 KSEPRKWSLDDVFVVISSGD 917 (917)
Q Consensus 898 k~~~~~l~~gD~lIVi~~~~ 917 (917)
++.+++||.|++++..+
T Consensus 533 ---~~~l~~GD~liv~g~~~ 549 (565)
T 4gx0_A 533 ---ETILAEGARLILIGTSE 549 (565)
T ss_dssp --------------------
T ss_pred ---CCEECCCCEEEEEECHH
T ss_conf ---87878999999998899
No 2
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=406.48 Aligned_cols=551 Identities=15% Similarity=0.186 Sum_probs=394.8
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCC--HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 440336568999999999999999988743048641-00037189991240--499999999982002799926999959
Q 002475 343 SVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSE-VIEKNHILILGWSD--KLGSLLKQLAVANKSIGGGVIVVLAER 419 (917)
Q Consensus 343 ~v~iil~Gi~ifa~lig~i~~~i~~~~~~lr~G~~~-v~~~~HiIIlG~g~--~~~~li~eL~~~~~~~~~~~iVVLid~ 419 (917)
-+..|++|+++|+++++.+++.+.++.. ..|+.. +..++|+|||||++ ....+++||...........+|++.+.
T Consensus 15 ~~~~IlgGI~lFa~~ig~liel~~~r~~--~~G~y~~~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~ 92 (798)
T 3naf_A 15 KLEEILSKLYHIENELARIKKLLGERKK--YGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNI 92 (798)
T ss_dssp ---------------------------C--CCSSCCCCCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred HHEEHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 3513468999999999999999998886--47751223688729999279788999999999751222468868999589
Q ss_pred CH-HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 93-7899999721013588618999977899888852685454579995389--99871059999999999530599874
Q 002475 420 DK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRG 496 (917)
Q Consensus 420 d~-e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~i~~A~aIIilt~d--~~~~~sDa~nl~~~L~ir~l~p~~~~ 496 (917)
++ .+++..+.. ...++.|++||++++++|+||++++|+++|++++. .++..+|++|++++|++|+++| +.
T Consensus 93 ~p~~eLe~lL~~-----~~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP--~i 165 (798)
T 3naf_A 93 SPNLELEALFKR-----HFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHP--KI 165 (798)
T ss_dssp CCCHHHHHHHHH-----TTTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHST--TC
T ss_pred CCCHHHHHHHHC-----CCCCEEEEECCCCCHHHHHHCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf 975889987643-----36854999907899899973597038899998785566776245999999999997789--98
Q ss_pred EEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCC------------------C
Q ss_conf 39999559999888987------39983788540999999999997088579999998327------------------8
Q 002475 497 HVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF------------------E 552 (917)
Q Consensus 497 ~IIa~v~d~e~~~~l~~------~Gad~VevV~~~~l~a~lLa~~~~~Pgi~~vl~~Ll~~------------------e 552 (917)
+|||++.++++..+++. +|+|.| |++.++.+++|++++.+||+..++.+|+.. .
T Consensus 166 ~IIa~~~~~en~~~L~~~~sw~~AGAd~V--I~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~ 243 (798)
T 3naf_A 166 RIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGV 243 (798)
T ss_dssp CEEEEESCTTGGGSGGGCTTCCTTTTCEE--EEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHCCCCHHCCCCEE--EEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 79999889767999873643011489889--9448999999999863997799999996035655443167899874346
Q ss_pred CCEEEEECCC-CCCCCCHHHHHH--H-CCCEEEEEEEEEEC--CCEEEECCCCCCEECCCCEEEEEEECCCCCCCC----
Q ss_conf 9349993189-657875876841--0-99919999999321--992884899995231898999998189966889----
Q 002475 553 NAEFYIKRWP-QLDDLRFEEVVI--S-FPDAIPCGIKVAAE--GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG---- 622 (917)
Q Consensus 553 g~Ei~i~~~p-~l~G~tl~el~~--~-~~~vivIGI~r~~~--~g~v~lnP~~d~vL~~gD~LiVIa~~~~~~~~~---- 622 (917)
+.|+|...++ .+.|++|+|+.. + ..+++++||.+... +|++.+||+++++|++||.++|||++++..+-.
T Consensus 244 g~Eiy~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~LivIa~~~~~vk~a~~yc 323 (798)
T 3naf_A 244 SNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYC 323 (798)
T ss_dssp TBCCEEEECCGGGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCTTCBCCTTCEEEECCBTTTGGGGGGSCS
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHHH
T ss_conf 86799985781138979999999988738779999983467889808989999878799998999968789999999999
Q ss_pred -CC------CCCHHC------------------------------------C--CCCCC-------CC-----CCCCCCE
Q ss_conf -99------510101------------------------------------2--44469-------99-----9999970
Q 002475 623 -PL------PEVVCK------------------------------------R--SFLKI-------PD-----PPKYPEK 645 (917)
Q Consensus 623 -~~------~~~i~~------------------------------------~--~~~~~-------~~-----~~~~~~h 645 (917)
.+ |+.+.+ + +|... .. .....+|
T Consensus 324 ~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nH 403 (798)
T 3naf_A 324 KACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGH 403 (798)
T ss_dssp SCCCCCGGGGGGSCCSCCCCCCCCCCCC-----------------CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHCCCCC
T ss_conf 86233211111111111236730124674335663112312332233202565100688756674200456665326888
Q ss_pred EEEECCCCC------HHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 999904558------8999999998639---9985999926873788888531898746767853999986848886783
Q 002475 646 ILFCGWRRD------IDDMIMVLEAFLA---PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 646 iLIiGw~~~------~~~li~~L~~~~~---~g~~i~Ii~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~L~ 716 (917)
|+||||+.. ...++..|++.-. .-.+|+++.+....+ +.|.. ...+++ |.++.|+|...++|+
T Consensus 404 ivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~~~~--~~w~~----i~~Fp~--Vy~v~Gspl~~~dL~ 475 (798)
T 3naf_A 404 VVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLK--REWET----LHNFPK--VSILPGTPLSRADLR 475 (798)
T ss_dssp EEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHHHHH--HHHTT----TTTSSS--EEBCBSCTTCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH--HHHHH----HHCCCC--EEEECCCCCCHHHHH
T ss_conf 8999806877503545883542420457722469989987887578--99997----517996--699669989878899
Q ss_pred CCCCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCC------HHHHHH
Q ss_conf 399888568999307887-676466719999999999874245789888998643345-----77762------257886
Q 002475 717 SLPLETFDSILILADESL-EDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLS-----GFSHS------SWIREM 784 (917)
Q Consensus 717 ~a~ie~AdsvIilsd~~~-~~~~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~-----~~s~~------~~i~~l 784 (917)
+|+|+.|+.+||+++... .+++..+|++++++.|-++++.-...-.-... .+..+. +.+.. ..-+..
T Consensus 476 ~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (798)
T 3naf_A 476 AVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQA-NSQGFTPPGMDRSSPDNSPVHGMLRQPS 554 (798)
T ss_dssp HTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-------------------------------------
T ss_pred HHCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 858876998999768987878814441788876520654105212343223-3322235443335654444310010123
Q ss_pred HHCCCCCEEEEEEECCCCCCHHHCCCCCC--------------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--
Q ss_conf 41277623899983442110010038983--------------78317899999999872011999999987146862--
Q 002475 785 QQASDKSIIISEILDSRTRNLVSVSRISD--------------YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNE-- 848 (917)
Q Consensus 785 ~~a~~~~~IvsEi~d~~~~~ll~~~g~~d--------------~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~eG~e-- 848 (917)
.+...+++|++|+..+.|.+++......+ .+.|..+...++.|+.+++++..+++.|++.....
T Consensus 555 ~~~~~~ipiitEL~~~~ni~fl~~~~~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg~~~~~ 634 (798)
T 3naf_A 555 ITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPEL 634 (798)
T ss_dssp --CTTCCCEEEEESSTTGGGGGSCCTTCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHH
T ss_conf 44578885589844877512256667776676324246533562227777888989888378999999999708971788
Q ss_pred ---------------------------EEEECCCCC-CC-CCCCCCHHHHHHHHC-CCCCEEEE-EEECCCC--------
Q ss_conf ---------------------------999707532-36-798766998998722-68919999-9967998--------
Q 002475 849 ---------------------------MCIKPAEFY-LF-DQEEISFFDIMIRGR-QRQEIVIG-YRLANTE-------- 889 (917)
Q Consensus 849 ---------------------------i~i~~~~~~-~~-~~~~ltf~el~~~~~-~~g~iiIG-i~~~~~~-------- 889 (917)
+...+.... ++ ...+.||++++..+. .++-++|| ||..+..
T Consensus 635 e~~~~~~~~~~~~~~~~~~~~~r~~c~l~~l~L~~~p~~~~~~~~tfg~lf~~~l~~~~~l~iGLYR~~~~~~~~~~~~~ 714 (798)
T 3naf_A 635 EALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCT 714 (798)
T ss_dssp HHHTTTSSSCCCCCCCTTGGGTTCCCEEEEEESTTSSTTTTTTTCCHHHHHTHHHHTTCCEECEEEEESTTSSSCCCCCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 87765304645676761101443345201355333676545455868999999998589520461442566556854468
Q ss_pred --CEEECCCCCCCCCEECCCCEEEEEECC
Q ss_conf --189789999999713289999999628
Q 002475 890 --RAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 890 --~~~inP~~k~~~~~l~~gD~lIVi~~~ 916 (917)
-++.|||. ++++.+.|.++|+...
T Consensus 715 kryVitnPp~---~~~l~~~D~vf~l~~~ 740 (798)
T 3naf_A 715 KRYVITNPPY---EFELVPTDLIFCLMQF 740 (798)
T ss_dssp CEEEEESCCT---TCCCCSSCEEEEEECC
T ss_pred CCEEEECCCC---CCCCCCCCEEEEEEEC
T ss_conf 8859948986---6704776769999705
No 3
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=367.99 Aligned_cols=430 Identities=14% Similarity=0.110 Sum_probs=331.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 37189991240499999999982002799926999959937899999721013588618999977899888852685454
Q 002475 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (917)
Q Consensus 382 ~~HiIIlG~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~i~~A 461 (917)
.+||||||+|+.+..++++|.. .++.|+++|.|++.++.+.++ .++.++.||++++++|++||+++|
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~------~~~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVG------ENNDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCS------TTEEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHH-------CCCEEEEECCCCHHHHHHCCCCCC
T ss_conf 6879999988999999999997------899799998999999999973-------694799970799999985698749
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 579995389998710599999999995305998743999955999988898------73998378854099999999999
Q 002475 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIGRLMIQC 535 (917)
Q Consensus 462 ~aIIilt~d~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~------~~Gad~VevV~~~~l~a~lLa~~ 535 (917)
+.+|++|++ |+.|+.+|+.+|++++ ..++|+|++++++....+ .+|.|. +|+|+..+++.+.+.
T Consensus 70 d~~ia~t~~------De~Nl~~~~~Ak~~~~--~~~~iar~~~~~~~~~~~~l~~~~~~giD~--iIsPe~~~a~~I~~~ 139 (461)
T 4g65_A 70 DMLVAVTNT------DETNMAACQVAFTLFN--TPNRIARIRSPQYLAQKEALFKSGAIPVDH--LIAPEELVTSYIERL 139 (461)
T ss_dssp SEEEECCSC------HHHHHHHHHHHHHHHC--CSSEEEECCCHHHHTTHHHHTTTSSSCCSE--EECHHHHHHHHHHHH
T ss_pred CEEEEECCC------HHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHHHHHHHHCCCCCCCE--EECHHHHHHHHHHHH
T ss_conf 999997498------4899999999998668--764214852602445566654303578544--645899999999986
Q ss_pred HCCCCHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHCC--CEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEE
Q ss_conf 7088579999998327-89349993189657875876841099--91999999932199288489999523189899999
Q 002475 536 ALQPGLAQIWEDILGF-ENAEFYIKRWPQLDDLRFEEVVISFP--DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (917)
Q Consensus 536 ~~~Pgi~~vl~~Ll~~-eg~Ei~i~~~p~l~G~tl~el~~~~~--~vivIGI~r~~~~g~v~lnP~~d~vL~~gD~LiVI 612 (917)
+..|++.+++...-+. +-.++.+.+.++++|++++++...++ ++.++|++| +|+ .+.|.+++++++||.++++
T Consensus 140 i~~p~~~~~~~f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R---~g~-~iiP~g~t~i~~gD~v~~i 215 (461)
T 4g65_A 140 IQYPGALQVVSFAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFR---QGR-PIRPQGTTIIEADDEVFFV 215 (461)
T ss_dssp HTSTTCSEEEEETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEE---TTE-EECCCTTCBCCTTCEEEEE
T ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCEECCCCHHHHHHHCCCCCEEEEEEEE---CCE-ECCCCCCCEECCCCEEEEE
T ss_conf 568870888882466489999996589736477289888547987549999997---884-5069977252479899998
Q ss_pred EECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 81899668899951010124446999999997099990455889999999986399985999926873788888531898
Q 002475 613 AEDDDTYAPGPLPEVVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGL 692 (917)
Q Consensus 613 a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~hiLIiGw~~~~~~li~~L~~~~~~g~~i~Ii~~~p~~er~~~l~~~gl 692 (917)
+..++..++... .....+..++++|+|+|+.|..+++.|.+ +..+++++. +++||+.+++
T Consensus 216 ~~~~~i~~~~~~-----------~g~~~~~~~~v~I~GgG~ig~~lA~~L~~----~~~v~iIE~--d~~r~~~la~--- 275 (461)
T 4g65_A 216 AASNHIRSVMSE-----------LQRLEKPYRRIMIVGGGNIGASLAKRLEQ----TYSVKLIER--NLQRAEKLSE--- 275 (461)
T ss_dssp EETTTHHHHHHH-----------TTGGGSCCCEEEEECCSHHHHHHHHHHTT----TSEEEEEES--CHHHHHHHHH---
T ss_pred ECCCHHHHHHHH-----------HCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCEEEEEC--CHHHHHHHHH---
T ss_conf 323057778876-----------44566555279998113899999997522----472699826--8899999998---
Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 74676785399998684888678339988856899930788767646671999999999987424578988899864334
Q 002475 693 DISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRL 772 (917)
Q Consensus 693 ~~~~l~~~~v~~i~GD~~~~~~L~~a~ie~AdsvIilsd~~~~~~~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~ 772 (917)
.|++.. +++||+++.+.|++++++.+|.++.+++ .|..|+++.|++++++.+
T Consensus 276 ---~l~~~~--Vi~GD~td~~~L~ee~i~~~D~~ia~T~---------~De~Ni~~~llAk~~gv~-------------- 327 (461)
T 4g65_A 276 ---ELENTI--VFCGDAADQELLTEENIDQVDVFIALTN---------EDETNIMSAMLAKRMGAK-------------- 327 (461)
T ss_dssp ---HCTTSE--EEESCTTCHHHHHHTTGGGCSEEEECCS---------CHHHHHHHHHHHHHTTCS--------------
T ss_pred ---HCCCCE--EEECCCCCHHHHHHCCCHHHCEEEECCC---------CCHHHHHHHHHHHHCCCC--------------
T ss_conf ---789864--8834545455576618222347998456---------817899999999973996--------------
Q ss_pred CCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 57776225788641277623899983442110010038983783178999999998720119999999871468629997
Q 002475 773 SGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIK 852 (917)
Q Consensus 773 ~~~s~~~~i~~l~~a~~~~~IvsEi~d~~~~~ll~~~g~~d~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~eG~ei~i~ 852 (917)
.+++.+.++++.++++..|++.+|.+..+.+..+.+....+.+..++. |.+....-+.+.
T Consensus 328 -------------------kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~~~~v~~v~~-l~~g~ae~iE~~ 387 (461)
T 4g65_A 328 -------------------KVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVRRADIVNVSS-LRRGAAEAIEAV 387 (461)
T ss_dssp -------------------EEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHHHTTCCCEEE-CGGGSCEEEEEE
T ss_pred -------------------CCCCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCEEEE-ECCCCEEEEEEE
T ss_conf -------------------400003463034444214654020789999999999854256532798-158853799999
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCCCEECCCCEEEEEEC
Q ss_conf 0753-23679876699899872268919999996799818978999999971328999999962
Q 002475 853 PAEF-YLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISS 915 (917)
Q Consensus 853 ~~~~-~~~~~~~ltf~el~~~~~~~g~iiIGi~~~~~~~~~inP~~k~~~~~l~~gD~lIVi~~ 915 (917)
-... .-++-.+.+..++ -..+|.+++++.|++ ++++ |.+ ++++++||++|++..
T Consensus 388 ~~~~~~~S~~vGk~l~dl---~lp~g~~I~aI~R~~--~~ii-P~g---dt~i~~gD~vivf~~ 442 (461)
T 4g65_A 388 AHGDESNSKVVGRAVGDI---KLPPGTTIGAIVRGE--EVLI-AHD---RTVIEQDDHVVMFLV 442 (461)
T ss_dssp CCSCGGGCSSTTSBGGGS---CCCTTEEEEEEEETT--EEEE-CCT---TCBCCTTCEEEEEES
T ss_pred EECCCCCCCCCCCCHHHC---CCCCCCEEEEEEECC--EEEC-CCC---CCEECCCCEEEEEEC
T ss_conf 964788985379599987---999996999999899--9991-799---978889999999986
No 4
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=366.29 Aligned_cols=491 Identities=16% Similarity=0.209 Sum_probs=347.5
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf 0371899912404--99999999982002799926999959937899999721013588618999977899888852685
Q 002475 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (917)
Q Consensus 381 ~~~HiIIlG~g~~--~~~li~eL~~~~~~~~~~~iVVLid~d~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~i 458 (917)
.++|||||||+.. +..+++||...........+|++.+.+++. + ++.. .+....+|.|++||++++++|+||++
T Consensus 2 gk~HivvcG~~~~~~l~~fL~ef~~~~~~~~~~~vVil~~~~p~~-e--l~~~-l~~~~~~v~~i~Gs~~~~~dL~ra~i 77 (722)
T 4hpf_A 2 GKKFIVVCGNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSL-E--LETI-FKCYLAYTTFISGSAMKWEDLRRVAV 77 (722)
T ss_dssp -CCEEEEESCCCHHHHHHHHTTC--------CCEEECCBSCC---------CC-CCTTTTSEECCBCCSSCHHHHHHHTG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH-H--HHHH-HHHHCCEEEEEECCCCCHHHHHHCCC
T ss_conf 988899978897799999999985404402897499973899888-9--9998-76307669999758899999972594
Q ss_pred CCCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH------CCCCEEEEECCHHHHHH
Q ss_conf 4545799953899--987105999999999953059987439999559999888987------39983788540999999
Q 002475 459 SKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGR 530 (917)
Q Consensus 459 ~~A~aIIilt~d~--~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~~------~Gad~VevV~~~~l~a~ 530 (917)
++|+++|++++.. ++..+|+.|+++++++|+++| +.+++|++.++++..+++. +|+|. +|+++++.++
T Consensus 78 ~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p--~~~iivq~~~~~n~~~~~~~~~~~~~gad~--VI~~~el~~~ 153 (722)
T 4hpf_A 78 ESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDS--TTRIIIQILQSHNKVYLPKIPSWNWDTGDN--IICFAELKLG 153 (722)
T ss_dssp GGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCT--TCCEEEECSSGGGGGHHHHSTTCCTTTTCE--EECHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHHCCCCE--EEEHHHHHHH
T ss_conf 209899996897667751669999999999997689--997999978766689998512456527976--9857998999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC------------------CCEEEEECCC-CCCCCCHHHHHHH---CCCEEEEEEEEEE
Q ss_conf 9999970885799999983278------------------9349993189-6578758768410---9991999999932
Q 002475 531 LMIQCALQPGLAQIWEDILGFE------------------NAEFYIKRWP-QLDDLRFEEVVIS---FPDAIPCGIKVAA 588 (917)
Q Consensus 531 lLa~~~~~Pgi~~vl~~Ll~~e------------------g~Ei~i~~~p-~l~G~tl~el~~~---~~~vivIGI~r~~ 588 (917)
+|++++.+||++.++.+|+... ++|+|....| .++|++|+++... ..+++++||.+..
T Consensus 154 lla~s~~~PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~~~~G~tf~e~~~~~~~~~~~iligi~~~~ 233 (722)
T 4hpf_A 154 FIAQGCLVPGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVARLCFLKMHLLLIAIEYKS 233 (722)
T ss_dssp HHHHHHHSTTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCGGGTTCBHHHHHHHHHHHSCCEEEEEEC--
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99998548987999999973256553301568999752668628995078011778999999999864685799863053
Q ss_pred ----CCCEEEECCCCCCEECCCCEEEEEEECCCCCCC---------------C---C------------CCC--------
Q ss_conf ----199288489999523189899999818996688---------------9---9------------951--------
Q 002475 589 ----EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP---------------G---P------------LPE-------- 626 (917)
Q Consensus 589 ----~~g~v~lnP~~d~vL~~gD~LiVIa~~~~~~~~---------------~---~------------~~~-------- 626 (917)
.++++.+||+++++|++||.+++||++.+..+. . . .+.
T Consensus 234 ~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (722)
T 4hpf_A 234 LFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALFYCSVCHDDVFIPELITNCGCKSRSRQHITVPSVKRMKKCL 313 (722)
T ss_dssp -----CCCCEESCCTTCBCCTTCEEEEEBSCHHHHHGGGC----------------------------------------
T ss_pred CCCCCCCEEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32367873998899883777998899997988997666420000122355566776458854344566677655443334
Q ss_pred --------------C-------------------HHC--------C--CCCCC------------CCCCCCCCEEEEECC
Q ss_conf --------------0-------------------101--------2--44469------------999999970999904
Q 002475 627 --------------V-------------------VCK--------R--SFLKI------------PDPPKYPEKILFCGW 651 (917)
Q Consensus 627 --------------~-------------------i~~--------~--~~~~~------------~~~~~~~~hiLIiGw 651 (917)
. ++. + .+... .......+|++|||.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nhivvc~~ 393 (722)
T 4hpf_A 314 KGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQLDSSGMFHWCKPTSLDKVTLKRTGKSKYKFRNHIVACVF 393 (722)
T ss_dssp ---------------------------------------CCBCSSSSBBCCCCCCHHHHBCCCCC---CCCCSCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEC
T ss_conf 45565546767863344555445677653222344566433355674035687551122201224442034687799953
Q ss_pred C------CCHHHHHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCC
Q ss_conf 5------58899999999863999---85999926873788888531898746767853999986848886783399888
Q 002475 652 R------RDIDDMIMVLEAFLAPG---SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 722 (917)
Q Consensus 652 ~------~~~~~li~~L~~~~~~g---~~i~Ii~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~L~~a~ie~ 722 (917)
+ ......+..|+++-.+. .+|+++.+.... ...|.. ...++ .|.++.|++.+.++|+++++..
T Consensus 394 ~~~~~~~~gL~~fi~PLRa~~~~~~el~pIViL~~~~~~--~~~w~~----i~~Fp--~Vy~~~GSpl~~~DL~ragi~~ 465 (722)
T 4hpf_A 394 GDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYL--QREWRF----LWNFP--QIYILPGCALYSGDLHAANIEQ 465 (722)
T ss_dssp CCTTSCCCCSHHHHGGGGBTTSCGGGCCCEEEEECHHHH--HHHGGG----GTTCS--SEEEEESCTTCHHHHHHTTGGG
T ss_pred CCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCC--HHHHHH----HHCCC--CEEEEECCCCCHHHHHHCCCCC
T ss_conf 684423342223124311223552457998998389988--899998----76589--8799989868788887607301
Q ss_pred CCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 568999307887-6764667199999999998742457898889986433457776225788641277623899983442
Q 002475 723 FDSILILADESL-EDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSR 801 (917)
Q Consensus 723 AdsvIilsd~~~-~~~~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~s~~~~i~~l~~a~~~~~IvsEi~d~~ 801 (917)
|+.+||++.++. .++...+|++++++++.++.++.... .....++|++|+.++.
T Consensus 466 a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~-------------------------~~~~~i~iitEL~~~s 520 (722)
T 4hpf_A 466 CSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEK-------------------------SNCRKVPILTELKNPS 520 (722)
T ss_dssp CSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC--------------------------------CCCEEEECSSGG
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------------CCCCCCCEEEEECCCC
T ss_conf 158999868987766660232999999999999976543-------------------------0477786799963710
Q ss_pred CCCHHHCCCCCC-----------------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEE-------------
Q ss_conf 110010038983-----------------7831789999999987201199999998714686-299-------------
Q 002475 802 TRNLVSVSRISD-----------------YVLSNELVSMALAMVAEDKQINRVLEELFAEEGN-EMC------------- 850 (917)
Q Consensus 802 ~~~ll~~~g~~d-----------------~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~eG~-ei~------------- 850 (917)
|.++++.....+ .|.+..+...++.|+..++.+..+++.|++.+.. +..
T Consensus 521 N~~fl~~~~~~~~~~~~~~~~~s~~FAsG~vfs~smldsLl~qsf~n~~i~~ii~~Ll~g~~~~~~~~~~~~~~~~~~~~ 600 (722)
T 4hpf_A 521 NIHFIEQLGGLEGSLQETNLHLSTAFSTGTVFSGSFLDSLLATAFYNYHVLELLQMLVTGGVSSQLEQHLDKDKVYGVAD 600 (722)
T ss_dssp GHHHHHHHHTCCTTTCCSSGGGSHHHHHTSEECGGGGGTHHHHHHHCHHHHHHHHHHHHSCCC-----------------
T ss_pred CCHHHCCCCCCHHCCCCCCCCCCHHHHCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 03010313232010347662246334066576999999999998746789999999835887613555432102335676
Q ss_pred -------------EECCCCC---CC-CCCCCCHHHHHHHHC-CCCCEEEE-EEECCCC--------CEEECCCCCCCCCE
Q ss_conf -------------9707532---36-798766998998722-68919999-9967998--------18978999999971
Q 002475 851 -------------IKPAEFY---LF-DQEEISFFDIMIRGR-QRQEIVIG-YRLANTE--------RAIINPSQKSEPRK 903 (917)
Q Consensus 851 -------------i~~~~~~---~~-~~~~ltf~el~~~~~-~~g~iiIG-i~~~~~~--------~~~inP~~k~~~~~ 903 (917)
+....++ ++ ...+.||++++..+. .++.++|| ||..+.. -+++|||. ++.
T Consensus 601 ~~~~~~~~~~~~~i~~~~L~~~~~~~~~~~~tfg~lF~~ll~~~~~i~IGLyR~~~~~~~~~~~~~yV~tnP~~---~~~ 677 (722)
T 4hpf_A 601 SCTSLLSGRNRCKLGLLSLHETILSDVNPRNTFGQLFCGSLDLFGILCVGLYRIIDEEELNPENKRFVITRPAN---EFK 677 (722)
T ss_dssp -------CSCCCEEEEECSSSSGGGGCSCCSBHHHHHHHHHHHHCCEEEEEEEECCCC-----CCEEEEESCCS---SCB
T ss_pred CCCHHCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCC---CCE
T ss_conf 64000134444442220101322441237898999999999867930899512478666777778989969799---885
Q ss_pred ECCCCEEEEEEC
Q ss_conf 328999999962
Q 002475 904 WSLDDVFVVISS 915 (917)
Q Consensus 904 l~~gD~lIVi~~ 915 (917)
++++|.++|+..
T Consensus 678 l~~~D~Vyvl~~ 689 (722)
T 4hpf_A 678 LLPSDLVFCAIP 689 (722)
T ss_dssp CCSSCEEEEEEC
T ss_pred ECCCCEEEEEEE
T ss_conf 788998999872
No 5
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=360.25 Aligned_cols=516 Identities=16% Similarity=0.205 Sum_probs=365.9
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCCCCEEEEECCCH-HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCC
Q ss_conf 0371899912404--9999999998200279992699995993-789999972101358861899997789988885268
Q 002475 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (917)
Q Consensus 381 ~~~HiIIlG~g~~--~~~li~eL~~~~~~~~~~~iVVLid~d~-e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~ 457 (917)
.++|||||||.+. +..+++||...+.......+|++.+.+| .+++..+.++ ..++.|++||++++++|+||+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~~-----~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHHH-----CSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHCC
T ss_conf 988799977886889999999997436455687489996899979999998740-----586499992789999997519
Q ss_pred CCCCCEEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECCHHHHH
Q ss_conf 5454579995389--998710599999999995305998743999955999988898------73998378854099999
Q 002475 458 VSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIG 529 (917)
Q Consensus 458 i~~A~aIIilt~d--~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~------~~Gad~VevV~~~~l~a 529 (917)
+++|+++|++++. .++..+|++|+.++|++|+++| +.+|||++.++++..+++ .+|+|.| |++.++.+
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP--~i~IVA~~~~~en~~~L~ri~sw~~AGAd~V--I~~~el~g 152 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHP--KIRIITQMLQYHNKAHLLNIPSWNWKEGDDA--ICLAELKL 152 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCT--TSCEEEEESCHHHHGGGGGSTTCCTTTTCEE--EEHHHHHH
T ss_pred HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHCCCHHHCCCCEE--EEHHHHHH
T ss_conf 5014799997675556775247999999999997689--9879999789778998860642121489889--96189999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCC------------------CCCEEEEECCC-CCCCCCHHHHHH---HCCCEEEEEEEEE
Q ss_conf 9999997088579999998327------------------89349993189-657875876841---0999199999993
Q 002475 530 RLMIQCALQPGLAQIWEDILGF------------------ENAEFYIKRWP-QLDDLRFEEVVI---SFPDAIPCGIKVA 587 (917)
Q Consensus 530 ~lLa~~~~~Pgi~~vl~~Ll~~------------------eg~Ei~i~~~p-~l~G~tl~el~~---~~~~vivIGI~r~ 587 (917)
++|++++.+||++.++.+|+.. .+.|+|...++ .++|++|+|+.. ...+++++||.+.
T Consensus 153 ~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~ 232 (726)
T 3mt5_A 153 GFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYK 232 (726)
T ss_dssp HHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGGGTTSBHHHHHHHHHHTTCCEEEEEEC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999863998799999997234655553267899874457866999857954588799999998886088799999843
Q ss_pred E--CCCEEEECCCCCCEECCCCEEEEEEECCCCCCCC--C---------CCCCHH-------------------------
Q ss_conf 2--1992884899995231898999998189966889--9---------951010-------------------------
Q 002475 588 A--EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG--P---------LPEVVC------------------------- 629 (917)
Q Consensus 588 ~--~~g~v~lnP~~d~vL~~gD~LiVIa~~~~~~~~~--~---------~~~~i~------------------------- 629 (917)
. .+|++.+||+.+++|++||.++|||++++..+-+ - .|++|.
T Consensus 233 ~~~~~g~iilNP~~d~~I~~GD~LiVIa~s~~evkra~~yc~~ch~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~ 312 (726)
T 3mt5_A 233 SANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPSTLSPKKKQRNGG 312 (726)
T ss_dssp -----CCCEESCCTTCBCCTTCEEEEEESCHHHHHTTTSCCC--------------------------------------
T ss_pred CCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56889808989999868789998999979789976554012247765578778532777544556653334210234555
Q ss_pred ---------C----------------------------C--CCCCC--C----------CCCCCCCEEEEECCCCC----
Q ss_conf ---------1----------------------------2--44469--9----------99999970999904558----
Q 002475 630 ---------K----------------------------R--SFLKI--P----------DPPKYPEKILFCGWRRD---- 654 (917)
Q Consensus 630 ---------~----------------------------~--~~~~~--~----------~~~~~~~hiLIiGw~~~---- 654 (917)
+ + +|-.. . ...+..+||+||++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tgmfhw~~~~~l~~~~l~~~~~~~~~~~~HivvC~~~~~~s~~ 392 (726)
T 3mt5_A 313 MRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSAL 392 (726)
T ss_dssp -------------------------CTTGGGSCCEETTSCBBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 32367788533457853356721010035665532135624315886488875046666553046848999956877752
Q ss_pred --HHHHHHHHHHHCCC---CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf --89999999986399---9859999268737888885318987467678539999868488867833998885689993
Q 002475 655 --IDDMIMVLEAFLAP---GSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSILIL 729 (917)
Q Consensus 655 --~~~li~~L~~~~~~---g~~i~Ii~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~L~~a~ie~AdsvIil 729 (917)
....+..|++..-+ =.+|+++.+.....| +|... ..++ +|.++.|.|...++|++|+|+.|+.+|||
T Consensus 393 ~gl~~fvmpLRasn~~~~elk~IV~lg~~~~~~~--ew~~l----~nfp--~iy~~~Gspl~~~dL~~~~i~~c~~cvil 464 (726)
T 3mt5_A 393 IGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKR--EWETL----HNFP--KVSILPGTPLSRADLRAVNINLCDMCVIL 464 (726)
T ss_dssp CCTHHHHTGGGBTTSCGGGCCCEEEEECHHHHHH--HHHHH----TTSS--SEEEEESCTTCHHHHHHTTGGGCSEEEEE
T ss_pred HHHHHHEEECCCCCCCHHHCCCEEEECCCCCCHH--HHHHH----HCCC--CEEEECCCCCCHHHHHHHCHHHCCEEEEE
T ss_conf 4246621100135588767498899888853799--99998----5488--61785699687675988587558788996
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCC-C-C-CCCCC-C-CCCC---HHHHHHHHCCCCCEEEEEEE
Q ss_conf 0788-767646671999999999987424578--988899-8-6-43345-7-7762---25788641277623899983
Q 002475 730 ADES-LEDSIVHSDSRSLATLLLIRDIQSKRL--PYRDTK-P-T-SLRLS-G-FSHS---SWIREMQQASDKSIIISEIL 798 (917)
Q Consensus 730 sd~~-~~~~~~~~Ds~tl~t~L~ir~l~~~~~--~~~~~~-~-~-~~~~~-~-~s~~---~~i~~l~~a~~~~~IvsEi~ 798 (917)
+... ..+++...|.++++..|-++.+.-... .+.... + . |.+.. . .++. ..-+...+-..+++|++|+.
T Consensus 465 s~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iitEL~ 544 (726)
T 3mt5_A 465 SANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELV 544 (726)
T ss_dssp ECC----------CHHHHHHHHHHHTCEEC-----------------------------------CCEEGGGSCEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEC
T ss_conf 58888767852000566655303200104554453223444556654344566667520011023333467773378741
Q ss_pred CCCCCCHHHCCCCCC--------------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-E---------------
Q ss_conf 442110010038983--------------7831789999999987201199999998714686-2---------------
Q 002475 799 DSRTRNLVSVSRISD--------------YVLSNELVSMALAMVAEDKQINRVLEELFAEEGN-E--------------- 848 (917)
Q Consensus 799 d~~~~~ll~~~g~~d--------------~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~eG~-e--------------- 848 (917)
++.|.+++.+...++ .+.+..+...+|.++..++.+..+++.|++.... +
T Consensus 545 ~~sni~fl~~~~~~~~~~~~~~~~~fa~G~~f~~s~ldsl~~~~~~n~~i~~~~~~litgg~t~~~e~~~~~~~~l~~~~ 624 (726)
T 3mt5_A 545 NDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGY 624 (726)
T ss_dssp CGGGGTTSCSSSCCCTTSCGGGSHHHHTTCEEEGGGGGTHHHHHHHCHHHHHHHHHHHTSCC---CHHHHHHHSSCCEEC
T ss_pred CCCCCEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf 77641320014666778432433520056243378898998988833789999999980887266888753125656776
Q ss_pred -----------EEEECCCCCC---C-CCCCCCHHHHHHHH-CCCCCEEEE-EEECCCC----------CEEECCCCCCCC
Q ss_conf -----------9997075323---6-79876699899872-268919999-9967998----------189789999999
Q 002475 849 -----------MCIKPAEFYL---F-DQEEISFFDIMIRG-RQRQEIVIG-YRLANTE----------RAIINPSQKSEP 901 (917)
Q Consensus 849 -----------i~i~~~~~~~---~-~~~~ltf~el~~~~-~~~g~iiIG-i~~~~~~----------~~~inP~~k~~~ 901 (917)
..+...+.+- . .+.+.||+|++..+ +.+|.++|| ||..+.+ -++.|||. +
T Consensus 625 s~~~~l~~r~rc~~~ql~l~~~~~~~~~~~~tfG~lF~~~l~~~~~lciGlYR~~~~~~~~~~~~~~ryvitnP~~---~ 701 (726)
T 3mt5_A 625 STPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPY---E 701 (726)
T ss_dssp CCHHHHHTTCCCEEEEEETTTSTTTGGGTTCBHHHHHHHHHHHSCCEEEEEEEESCC----CCCCCCEEEEESCCT---T
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCC---C
T ss_conf 6510014334553022035545311135678699999999986890178733236754566667788869938998---7
Q ss_pred CEECCCCEEEEEECC
Q ss_conf 713289999999628
Q 002475 902 RKWSLDDVFVVISSG 916 (917)
Q Consensus 902 ~~l~~gD~lIVi~~~ 916 (917)
+++.+.|.++|+...
T Consensus 702 ~~l~~~D~vf~l~~~ 716 (726)
T 3mt5_A 702 FELVPTDLIFCLMQF 716 (726)
T ss_dssp CBCCTTCEEEEEECC
T ss_pred CCCCCCCEEEEEECC
T ss_conf 845764469998627
No 6
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=1.00 E-value=1 Score=327.69 Aligned_cols=298 Identities=22% Similarity=0.350 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 99999999987553521379988999999976524678887-689659035440336568999999999999999988-7
Q 002475 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKV-D 370 (917)
Q Consensus 293 ~~~l~lil~g~~~~~~~e~~s~~dAly~~~~titTvGygd~-~~t~~gRi~~v~iil~Gi~ifa~lig~i~~~i~~~~-~ 370 (917)
+++++++++|+++|+++|+++|.||+||+++|+||+||||. |.+..+|+|+++++++|+++++++++.+++.+.++. +
T Consensus 25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988289899999999988542248898779807799999999999999999999999999989999
Q ss_pred HHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
Q ss_conf 43048641000371899912404999999999820027999269999599378999997210135886189999778998
Q 002475 371 SLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLIL 450 (917)
Q Consensus 371 ~lr~G~~~v~~~~HiIIlG~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~ 450 (917)
+. .++.+...++|++|||||+.+..++++|.. .++ |+++|.|++.++ ..+ .++.++.||++++
T Consensus 105 ~~-~~~~~~~~~~~viI~G~G~~g~~l~~~L~~------~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~ 167 (336)
T 1lnq_A 105 KL-MGLIDVAKSRHVVICGWSESTLECLRELRG------SEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRV 167 (336)
T ss_dssp ------------CEEEEESCCHHHHHHHTTGGG------SCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSH
T ss_pred HH-HHHHHHCCCCCEEEECCCHHHHHHHHHHHH------CCC-EEEEECCHHHHH-HHH--------CCCEEEEECCCCH
T ss_conf 98-745443046878997786799999999975------895-899958855514-776--------8947998289998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 88852685454579995389998710599999999995305998743999955999988898739983788540999999
Q 002475 451 ADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGR 530 (917)
Q Consensus 451 e~L~rA~i~~A~aIIilt~d~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~~~Gad~VevV~~~~l~a~ 530 (917)
++|+++++++|+++++++++ |+.|+.+++.+|+++| +.++++++.++++.+.++.+|+|.+ +++++..+.
T Consensus 168 ~~L~~a~i~~a~~vi~~~~~------d~~n~~~~~~ar~~~~--~~~iiar~~~~~~~~~l~~~G~d~v--i~~~~~~~~ 237 (336)
T 1lnq_A 168 SDLEKANVRGARAVIVDLES------DSETIHCILGIRKIDE--SVRIIAEAERYENIEQLRMAGADQV--ISPFVISGR 237 (336)
T ss_dssp HHHHHTCSTTEEEEEECCSS------HHHHHHHHHHHHTTCT--TSEEEEECSSGGGHHHHHHTTCSEE--ECHHHHHHH
T ss_pred HHHHHCCHHHCCEEEECCCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCEE--ECHHHHHHH
T ss_conf 99985594552599996876------1889999999998789--9869999889778999997697999--995676999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCC-C---CEEEEECCCCCCCCCHHHHHHH-CCCEEEEEEEEEECCCEEEECCCCCCEECC
Q ss_conf 9999970885799999983278-9---3499931896578758768410-999199999993219928848999952318
Q 002475 531 LMIQCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKE 605 (917)
Q Consensus 531 lLa~~~~~Pgi~~vl~~Ll~~e-g---~Ei~i~~~p~l~G~tl~el~~~-~~~vivIGI~r~~~~g~v~lnP~~d~vL~~ 605 (917)
.+++.+..|++..++++++... + .|+.+.+.+++.|++++|+..+ ..++.++|+.| +|+..++|+++++|++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~~~~ii~i~r---~~~~~~~P~~~~~l~~ 314 (336)
T 1lnq_A 238 LMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRA 314 (336)
T ss_dssp HHHHTSSCSHHHHHHHHHTSSCSSCEEEEEECCSSCSSTTCBHHHHCHHHHHCCEEEEEEC---SSCEESSCCTTCBCCS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEEE---CCEEEECCCCCCEECC
T ss_conf 9999983803799999997076774699999689997598898981516016949999998---9977879299818869
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 989999981899668
Q 002475 606 GDEVLVIAEDDDTYA 620 (917)
Q Consensus 606 gD~LiVIa~~~~~~~ 620 (917)
||.++++|++++..+
T Consensus 315 gD~liv~g~~~~~~~ 329 (336)
T 1lnq_A 315 GDIILGIGKPEEIER 329 (336)
T ss_dssp SCEEEEEECHHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 999999987999999
No 7
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=213.01 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=181.0
Q ss_pred CCCEEEEECCCCCHH--HHHHHHHHH--CCCCCEEEEECCCC-HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 997099990455889--999999986--39998599992687-3788888531898746767853999986848886783
Q 002475 642 YPEKILFCGWRRDID--DMIMVLEAF--LAPGSELWMLNEVP-EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 716 (917)
Q Consensus 642 ~~~hiLIiGw~~~~~--~li~~L~~~--~~~g~~i~Ii~~~p-~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~L~ 716 (917)
.++|++||||.+... ..+++|... ......++++++.+ +.|.+..+.. + ..++.+++||++++++|+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~-------~-~~~V~fI~Gdat~~edL~ 73 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR-------H-FTQVEFYQGSVLNPHDLA 73 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHH-------H-CSSEEEECCCTTSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH-------H-CCCEEEEEECCCCHHHHH
T ss_conf 98879997788688999999999743645568748999689997999999874-------0-586499992789999997
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE
Q ss_conf 39988856899930788767646671999999999987424578988899864334577762257886412776238999
Q 002475 717 SLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISE 796 (917)
Q Consensus 717 ~a~ie~AdsvIilsd~~~~~~~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~s~~~~i~~l~~a~~~~~IvsE 796 (917)
+|++++|++++|+++... .++..+|+++++++|++|+++|+ ++|+++
T Consensus 74 RA~I~~A~aVIIlad~~~-~d~~~sDa~nIl~vLsar~lnP~--------------------------------i~IVA~ 120 (726)
T 3mt5_A 74 RVKIESADACLILANKYC-ADPDAEDASNIMRVISIKNYHPK--------------------------------IRIITQ 120 (726)
T ss_dssp HTTGGGCSEEEEECCTTC-SCHHHHHHHHHHHHHHHHHHCTT--------------------------------SCEEEE
T ss_pred HCCHHHCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC--------------------------------CCEEEE
T ss_conf 519501479999767555-67752479999999999976899--------------------------------879999
Q ss_pred EECCCCCCHHH------CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------CCCEEEEE
Q ss_conf 83442110010------0389837831789999999987201199999998714------------------68629997
Q 002475 797 ILDSRTRNLVS------VSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE------------------EGNEMCIK 852 (917)
Q Consensus 797 i~d~~~~~ll~------~~g~~d~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~------------------eG~ei~i~ 852 (917)
+.+++++..+. .+|++++|.+.++.+++||+.+..|++..++.+|++. .|+++|..
T Consensus 121 ~~~~en~~~L~ri~sw~~AGAd~VI~~~el~g~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v 200 (726)
T 3mt5_A 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTE 200 (726)
T ss_dssp ESCHHHHGGGGGSTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEE
T ss_pred ECCHHHHHHHHHCCCHHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 78977899886064212148988996189999999998639987999999972346555532678998744578669998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHC-CCCCEEEEEEEC----CCCCEEECCCCCCCCCEECCCCEEEEEECC
Q ss_conf 0753236798766998998722-689199999967----998189789999999713289999999628
Q 002475 853 PAEFYLFDQEEISFFDIMIRGR-QRQEIVIGYRLA----NTERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 853 ~~~~~~~~~~~ltf~el~~~~~-~~g~iiIGi~~~----~~~~~~inP~~k~~~~~l~~gD~lIVi~~~ 916 (917)
+.+.. ..++||.++....+ +.|.++||+++. ++ ++++||+. ++++.+||.+||||++
T Consensus 201 ~l~s~---~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g-~iilNP~~---d~~I~~GD~LiVIa~s 262 (726)
T 3mt5_A 201 YLSSA---FVGLSFPTVCELCFVKLKLLMIAIEYKSANRES-RILINPGN---HLKIQEGTLGFFIASD 262 (726)
T ss_dssp ECCGG---GTTSBHHHHHHHHHHTTCCEEEEEEC------C-CCEESCCT---TCBCCTTCEEEEEESC
T ss_pred ECCCC---CCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCC-EEEECCCC---CCEECCCCEEEEEECC
T ss_conf 57954---588799999998886088799999843568898-08989999---8687899989999797
No 8
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=207.77 Aligned_cols=230 Identities=18% Similarity=0.192 Sum_probs=147.9
Q ss_pred CCCCCEEEEECCCCCH--HHHHHHHHHHC--CCCCEEEEECCC-CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 9999709999045588--99999999863--999859999268-737888885318987467678539999868488867
Q 002475 640 PKYPEKILFCGWRRDI--DDMIMVLEAFL--APGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRH 714 (917)
Q Consensus 640 ~~~~~hiLIiGw~~~~--~~li~~L~~~~--~~g~~i~Ii~~~-p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~~~~~~ 714 (917)
.+..+|++||||.+.. ..++++|.... ..+..++++++. |..|....+.. + ..++.+++||++++++
T Consensus 50 ~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~~p~~eLe~lL~~-------~-~~~V~fI~Gdat~~e~ 121 (798)
T 3naf_A 50 VSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR-------H-FTQVEFYQGSVLNPHD 121 (798)
T ss_dssp CCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESSCCCHHHHHHHHH-------T-TTTEEEEECCSSSHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHC-------C-CCCEEEEECCCCCHHH
T ss_conf 3688729999279788999999999751222468868999589975889987643-------3-6854999907899899
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEE
Q ss_conf 83399888568999307887676466719999999999874245789888998643345777622578864127762389
Q 002475 715 LESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIII 794 (917)
Q Consensus 715 L~~a~ie~AdsvIilsd~~~~~~~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~s~~~~i~~l~~a~~~~~Iv 794 (917)
|++|++++|++++|+++... .++..+|+++++++|++|+++|+ ++|+
T Consensus 122 L~RAgI~~A~aVIIla~~~~-~d~~~~Da~nIl~vLsar~lnP~--------------------------------i~II 168 (798)
T 3naf_A 122 LARVKIESADACLILANKYC-ADPDAEDASNIMRVISIKNYHPK--------------------------------IRII 168 (798)
T ss_dssp HHHTTGGGCSEEEECCCTTC-SCHHHHHHHHHHHHHHHHHHSTT--------------------------------CCEE
T ss_pred HHHCCHHHCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC--------------------------------CCEE
T ss_conf 97359703889999878556-67762459999999999977899--------------------------------8799
Q ss_pred EEEECCCCCCHHHC------CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------CCCEEE
Q ss_conf 99834421100100------389837831789999999987201199999998714------------------686299
Q 002475 795 SEILDSRTRNLVSV------SRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE------------------EGNEMC 850 (917)
Q Consensus 795 sEi~d~~~~~ll~~------~g~~d~V~S~~lvs~~lAq~a~~p~i~~vl~eLl~~------------------eG~ei~ 850 (917)
+++.+++++..+.. +|++++|.+.++.+++||+.+..|++..++.+|++. .|+++|
T Consensus 169 a~~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~g~Eiy 248 (798)
T 3naf_A 169 TQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMY 248 (798)
T ss_dssp EEESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHHTBCCE
T ss_pred EEECCHHHHHHHHHCCCCHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 99889767999873643011489889944899999999986399779999999603565544316789987434686799
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHC-CCCCEEEEEEECC---CCCEEECCCCCCCCCEECCCCEEEEEECC
Q ss_conf 970753236798766998998722-6891999999679---98189789999999713289999999628
Q 002475 851 IKPAEFYLFDQEEISFFDIMIRGR-QRQEIVIGYRLAN---TERAIINPSQKSEPRKWSLDDVFVVISSG 916 (917)
Q Consensus 851 i~~~~~~~~~~~~ltf~el~~~~~-~~g~iiIGi~~~~---~~~~~inP~~k~~~~~l~~gD~lIVi~~~ 916 (917)
..+.+.. ..++||.++....+ +.|.++||+++.+ +.++++||++ ++++.+||.+||||++
T Consensus 249 ~v~l~s~---~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~---d~~L~~GD~LivIa~~ 312 (798)
T 3naf_A 249 TEYLSSA---FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGN---HLKIQEGTLGFFIASD 312 (798)
T ss_dssp EEECCGG---GTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCT---TCBCCTTCEEEECCBT
T ss_pred EEECCCC---CCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCC---CCEECCCCEEEEEECC
T ss_conf 9857811---38979999999988738779999983467889808989999---8787999989999687
No 9
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=201.70 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=173.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 71899912404999999999820027999269999599378999997210135886189999778998888526854545
Q 002475 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (917)
Q Consensus 383 ~HiIIlG~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L~rA~i~~A~ 462 (917)
+|++|||||+.+..++++|.+. ++.|+++|.|++.++.. . .++.||++++++|+++++++|+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~~~~~-----------~-~~i~gD~t~~~~L~~agi~~ad 410 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESPVCND-----------H-VVVYGDATVGQTLRQAGIDRAS 410 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCSSCCS-----------S-CEEESCSSSSTHHHHHTTTSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHHHHC-----------C-CEEEECCCCHHHHHHCCCCCCC
T ss_conf 9889989887899999999987------99789997886898626-----------8-7899078998999864924139
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCHH
Q ss_conf 79995389998710599999999995305998743999955999988898739983788540999999999997088579
Q 002475 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (917)
Q Consensus 463 aIIilt~d~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~~~Gad~VevV~~~~l~a~lLa~~~~~Pgi~ 542 (917)
.+|+++++ |+.|+.+++.+|++++ ..++|++++++++.+.++.+|+|.| ++|+...++.+++.+..|.+.
T Consensus 411 ~vi~~~~~------d~~ni~~~~~ak~l~~--~~~iiar~~~~~~~~~l~~~G~d~v--i~p~~~~~~~i~~~~~~~~~~ 480 (565)
T 4gx0_A 411 GIIVTTND------DSTNIFLTLACRHLHS--HIRIVARANGEENVDQLYAAGADFV--VSNASVGANILGNLLEHKESA 480 (565)
T ss_dssp EEEECCSC------HHHHHHHHHHHHHHCS--SSEEEEEESSTTSHHHHHHHTCSEE--EEHHHHHHHHHHHHHHCC---
T ss_pred EEEEECCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCEE--ECCCHHHHHHHHHHHCCHHHH
T ss_conf 99997798------2679999999998789--9879999788777999997699899--814007999999973564450
Q ss_pred HHHHHHHCCCCCE-EEEECCCCCCCCCHHHHHHH-CCCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCCC
Q ss_conf 9999983278934-99931896578758768410-999199999993219928848999952318989999981899668
Q 002475 543 QIWEDILGFENAE-FYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (917)
Q Consensus 543 ~vl~~Ll~~eg~E-i~i~~~p~l~G~tl~el~~~-~~~vivIGI~r~~~~g~v~lnP~~d~vL~~gD~LiVIa~~~~~~~ 620 (917)
.+.+ +.+ +.+...+++.|++++|+..+ .+++.++||.|. .+|+...+|.++++|++||.|+++|+.++..+
T Consensus 481 ~~~~------~~~~~~v~~~s~~~Gk~l~el~l~~~~~~~v~aI~R~-~~~~~~~~p~~~~~l~~GD~liv~g~~~~i~~ 553 (565)
T 4gx0_A 481 FLSE------GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAP-DRADILISPPPETILAEGARLILIGTSEQEKT 553 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHC------CEEEEEECCCCCCCCCCHHHCCHHHHCCCEEEEEEEC-CCCCEEECCCCCCEECCCCEEEEEECHHHHHH
T ss_conf 3515------7299997289875888889913366529789999967-99955889699878789999999988999999
Q ss_pred CCC
Q ss_conf 899
Q 002475 621 PGP 623 (917)
Q Consensus 621 ~~~ 623 (917)
+..
T Consensus 554 ~~~ 556 (565)
T 4gx0_A 554 FDQ 556 (565)
T ss_dssp ---
T ss_pred HHH
T ss_conf 999
No 10
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=1.00 E-value=1 Score=196.68 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=183.2
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 48641000371899912404999999999820027999269999599378999997210135886189999778998888
Q 002475 374 KGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (917)
Q Consensus 374 ~G~~~v~~~~HiIIlG~g~~~~~li~eL~~~~~~~~~~~iVVLid~d~e~ie~~~~~~~~~~~~~~V~~i~GD~~d~e~L 453 (917)
+|+..+..++|++|||||..+..++++|.. .++ |+++|.+++.++... .++.++.||+++++.|
T Consensus 1 ~G~~~~~~~~~viI~G~G~~G~~la~~L~~------~g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l 64 (234)
T 2aef_A 1 MGLIDVAKSRHVVICGWSESTLECLRELRG------SEV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDL 64 (234)
T ss_dssp ---------CEEEEESCCHHHHHHHHHSTT------SEE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHH------CCE-EEEEECCHHHHHHHH---------CCCEEEECCCCCHHHH
T ss_conf 998887878979998997689999999874------992-999978989999986---------6981998488778999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 52685454579995389998710599999999995305998743999955999988898739983788540999999999
Q 002475 454 KKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMI 533 (917)
Q Consensus 454 ~rA~i~~A~aIIilt~d~~~~~sDa~nl~~~L~ir~l~p~~~~~IIa~v~d~e~~~~l~~~Gad~VevV~~~~l~a~lLa 533 (917)
+++++++|+.+|+++++ |+.|+.+++.++.+++ ..++|+++.++++.+.++.+|++. ++.|....+..|+
T Consensus 65 ~~a~i~~ad~vi~~~~~------d~~n~~~~~~a~~~~~--~~~iia~~~~~~~~~~l~~~G~~~--vi~p~~~~a~~l~ 134 (234)
T 2aef_A 65 EKANVRGARAVIVDLES------DSETIHCILGIRKIDE--SVRIIAEAERYENIEQLRMAGADQ--VISPFVISGRLMS 134 (234)
T ss_dssp HHTTCTTCSEEEECCSC------HHHHHHHHHHHHHHCS--SSEEEEECSSGGGHHHHHHHTCSE--EECHHHHHHHHHH
T ss_pred HHCCCCHHCEEEECCCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCE--EECHHHHHHHHHH
T ss_conf 86694032599991798------3889999999998789--986999978876799999779999--9988887999999
Q ss_pred HHHCCCCHHHHHHHHHCCC-C---CEEEEECCCCCCCCCHHHHHHH-CCCEEEEEEEEEECCCEEEECCCCCCEECCCCE
Q ss_conf 9970885799999983278-9---3499931896578758768410-999199999993219928848999952318989
Q 002475 534 QCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDE 608 (917)
Q Consensus 534 ~~~~~Pgi~~vl~~Ll~~e-g---~Ei~i~~~p~l~G~tl~el~~~-~~~vivIGI~r~~~~g~v~lnP~~d~vL~~gD~ 608 (917)
+.+..|++..++++++... + .++.+.+.+++.|++++|+..+ .+++.+++|.| +|+..++|.++++|++||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R---~~~~~~~p~~~~~l~~GD~ 211 (234)
T 2aef_A 135 RSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRAGDI 211 (234)
T ss_dssp HTSSCSHHHHHHHHHHC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE---TTEEEESCCTTCBCCTTCE
T ss_pred HHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEEEE---CCEEEECCCCCCEECCCCE
T ss_conf 9982912899999996177884699999799996289798993430406929999998---9937848999878879999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999818996688
Q 002475 609 VLVIAEDDDTYAP 621 (917)
Q Consensus 609 LiVIa~~~~~~~~ 621 (917)
++++|+.++..++
T Consensus 212 l~v~g~~~~l~~~ 224 (234)
T 2aef_A 212 ILGIGKPEEIERL 224 (234)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999889999999
Done!