Query 002476
Match_columns 917
No_of_seqs 568 out of 3774
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 16:37:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002476.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1196-1200//hhsearch_pdb/002476hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 185.5 16.5 141 712-899 766-914 (1080)
2 2cxk_A Camta1, calmodulin bind 1.0 1 1 180.2 8.4 88 362-455 4-91 (95)
3 4gpm_A Engineered protein OR26 1.0 1 1 177.7 17.6 130 533-670 34-164 (169)
4 4b93_B Ankyrin repeat domain-c 1.0 1 1 174.8 7.6 139 533-679 83-222 (269)
5 4gpm_A Engineered protein OR26 1.0 1 1 171.6 15.3 134 536-677 4-138 (169)
6 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 170.0 14.3 131 537-675 133-273 (497)
7 4b93_B Ankyrin repeat domain-c 1.0 1 1 169.4 16.2 120 532-661 115-235 (269)
8 3ljn_A Hypothetical protein; a 1.0 1 1 168.0 16.7 135 534-676 136-278 (364)
9 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 167.8 13.7 130 535-672 89-220 (253)
10 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 165.2 17.7 135 534-676 243-378 (437)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=185.48 Aligned_cols=141 Identities=29% Similarity=0.431 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf 64899999999985435554468862289289999999999999887869999979------999999999976999999
Q 002476 712 TAAEAAARIQAAFREHSLKVQTKAIRFSSPEEEAQNIIAALKIQHAFRNFEVRKKM------AAAARIQHRFRSWKVRKE 785 (917)
Q Consensus 712 ~~~~Aa~~IQ~~~R~~~~Rkr~~~~~~~~~~~~~~~~~Aa~~iQ~~~R~~~~r~~~------~aa~~IQs~~Rg~~~Rk~ 785 (917)
....+|+.||++||+|..|+++.+++ .|++.||++||++..|+.+ .||+.||+.||||.+|+.
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r-----------~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMR-----------RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88877778888877889999850127-----------7899999999998876202212200467778788754999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999997999999998877--9999999999999999887565655654301589999723579999999
Q 002476 786 FLNMRRQAIKIQAAFRGFQVRKQYGKILW--SVGVLEKAILRWRLKRKGFRGLQVDRVEVEAVSDPNHEGDAEEDFYRAS 863 (917)
Q Consensus 786 ~~~~r~aav~IQa~~Rg~~~Rk~y~~~~~--av~~IQ~~iRr~r~~r~~lR~lr~~~~~~~~~~~q~~~~~~~~~~l~~~ 863 (917)
|..++.+++.||++|||+++|+.|+.++. +++.||+.||+|+. |+.++
T Consensus 835 y~~lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~-R~~y~----------------------------- 884 (1080)
T 2dfs_A 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA-RVHYH----------------------------- 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHH-HHHTT-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----------------------------
T ss_conf 999988889999999889999999999987788899999999999-99988-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998865999999999999999
Q 002476 864 RKQAEERVERSVVRVQSMFRSKKAQEEYRRMKLAHD 899 (917)
Q Consensus 864 R~q~e~r~~~AvirIQs~~R~~~aR~qy~rlk~~~~ 899 (917)
+..++++.||++||++.+|+++++++.+++
T Consensus 885 ------~~~~aai~iQs~~R~~laRr~~~~Lk~ear 914 (1080)
T 2dfs_A 885 ------RTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914 (1080)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------877669999999999999999999999998
No 2
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=1.00 E-value=1 Score=180.16 Aligned_cols=88 Identities=34% Similarity=0.696 Sum_probs=82.4
Q ss_pred CCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 86503587338986689974899987788873337886469980990032030106703773899999627999995799
Q 002476 362 EHLFSITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPPHSPGLFLLYMSLDGH 441 (917)
Q Consensus 362 ~~~f~I~d~sP~w~~~~gg~kVlI~G~f~~~~~~~~~~~~~c~FG~~~Vpa~~i~~gvlrC~~Pph~~G~V~l~v~~~n~ 441 (917)
..++.|+||||+|||..|||||+|+|.|+.. ..+|.||||+++||++++++|+|+|++|||.+|.|+|+|+++++
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-----gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~ 78 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQ 78 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCC-----SSCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCC-----CCCEEEEECCEEEEEEEEECCEEEEEECCCCCCEEEEEEEECCE
T ss_conf 8847988978785447999999999378789-----96289999999776899679999999558887268699999990
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 76541111344798
Q 002476 442 KPISQVLNFEYRSP 455 (917)
Q Consensus 442 ~~~se~~~Feyr~~ 455 (917)
. +|+.++|||++.
T Consensus 79 ~-~s~~~~FeY~~~ 91 (95)
T 2cxk_A 79 I-ISNSVVFEYKSG 91 (95)
T ss_dssp E-CSCCEEEEECCC
T ss_pred E-CCCCEEEEEECC
T ss_conf 3-488638898679
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=177.67 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=120.6
Q ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 876663879999819928999999973-9998744679980678999709999999999869997533799993999999
Q 002476 533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 611 (917)
Q Consensus 533 ~~~~~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~Aa 611 (917)
..++.++|+.++..++.. ++..|+. |++++..|..|.||||+|+..|+.+++++|+.+|+++|.+|.+|+||||+|+
T Consensus 34 d~~g~t~l~~a~~~~~~~--~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~ 111 (169)
T 4gpm_A 34 DSDGRTPLHHAAENGHKE--VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111 (169)
T ss_dssp CTTSCCHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHH--HHHHHHHCCCCHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 999898999999849999--999998315311330357999999999939799999999876999987999998999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 81999999999865999998889998899999699999981969999999870000032
Q 002476 612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQF 670 (917)
Q Consensus 612 ~~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l 670 (917)
..|+.+++++|+..|++++. +|..|.|||++|+..|+.+++++|+++|++.+.
T Consensus 112 ~~g~~~~v~~Ll~~gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 112 ENGHKEVVKLLISKGADVNT------SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 85989999999986997415------699999999999986899999999987999077
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=174.78 Aligned_cols=139 Identities=18% Similarity=0.149 Sum_probs=128.0
Q ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 876663879999819928999999973-9998744679980678999709999999999869997533799993999999
Q 002476 533 LPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAA 611 (917)
Q Consensus 533 ~~~~~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~Aa 611 (917)
..++.|||+.++..++.. +++.|+. |++++..+..|.||+|+|+..++..++++|+..|+++|.+|..|+||||+|+
T Consensus 83 d~~G~TpLh~A~~~g~~~--~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRAD--LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC 160 (269)
T ss_dssp CTTSCCHHHHHHHTTCTT--HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999999999849699--999998659986755789998330000127299999999879998877899999999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 81999999999865999998889998899999699999981969999999870000032334434322
Q 002476 612 YYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAGNI 679 (917)
Q Consensus 612 ~~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~~~l~~~i 679 (917)
..|+.+++++|++.|++++. ++..|.||||+|+..|+.+++++|+++|++.+..+.....++
T Consensus 161 ~~g~~~~v~~Ll~~gadvn~------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL 222 (269)
T 4b93_B 161 SGGHHELVALLLQHGASINA------SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222 (269)
T ss_dssp HTTCGGGHHHHHHTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSG
T ss_pred HCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 87899999999978799783------214788389999986889999999987889988699999999
No 5
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=171.64 Aligned_cols=134 Identities=22% Similarity=0.276 Sum_probs=124.0
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 663879999819928999999973-9998744679980678999709999999999869997533799993999999819
Q 002476 536 AKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYG 614 (917)
Q Consensus 536 ~~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~Aa~~G 614 (917)
...+|+.|+..|+.. +++.|++ |+++|..|..|.||||+|+..++..++++|+..|++++.+|..|+||||+|+..|
T Consensus 4 lg~~L~~Aa~~G~~~--~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 4 LGKRLIEAAENGNKD--RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHHHTTCHH--HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHCC
T ss_conf 789999999958999--999999878998884999898999999849999999998315311330357999999999939
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999998659999988899988999996999999819699999998700000323344343
Q 002476 615 REKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLAG 677 (917)
Q Consensus 615 ~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~~~l~~ 677 (917)
+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|++.|++.+..+.....
T Consensus 82 ~~~~v~~Ll~~gadvn~------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T 138 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNA------KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138 (169)
T ss_dssp CHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 79999999987699998------7999998999999859899999999869974156999999
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=170.04 Aligned_cols=131 Identities=21% Similarity=0.182 Sum_probs=119.3
Q ss_pred CCHHHHHHHCCCCHHHHHHHHHC-CCCCCCC------CCCCCHHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 63879999819928999999973-9998744------6799806789997---099999999998699975337999939
Q 002476 537 KDSFFELTLKSKLKEWLLERVVE-GSKTTEY------DVHGQGVIHLCAM---LGYTWAILLFSWSGLSLDFRDKYGWTA 606 (917)
Q Consensus 537 ~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~------d~~G~T~LHlAA~---~G~~~~v~~LL~~Ga~in~~D~~G~Tp 606 (917)
.+.|+.++..++.. .+..|+. |+++|.. |..|.||||+|+. .|+.+++++|+.+|+++|.+|..|+||
T Consensus 133 ~~~L~~A~~~g~~~--~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLL--SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 89999988635899--9999986066535777775434555058899998601564799999997499977608999959
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999998199999999986599999888999889999969999998196999999987000003233443
Q 002476 607 LHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTL 675 (917)
Q Consensus 607 LH~Aa~~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~~~l 675 (917)
||+|+..|+.+++++||.+||+++. +|..|.||||+|+..|+.+++++|+++|++.+...+.+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~ 273 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGT------VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSC------CCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 9999980989899999976999878------19898979999998197999999998189988986113
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=169.37 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=106.3
Q ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 9876663879999819928999999973-999874467998067899970999999999986999753379999399999
Q 002476 532 SLPEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610 (917)
Q Consensus 532 ~~~~~~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~A 610 (917)
...++.++++.++..++.. +++.|++ |++++..|..|.||||+||..|+.+++++|+..|+++|.+|..|+||||+|
T Consensus 115 ~~~~g~t~l~~a~~~~~~~--~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A 192 (269)
T 4b93_B 115 RNADQAVPLHLACQQGHFQ--VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192 (269)
T ss_dssp CCTTCCCHHHHHHHHTCHH--HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 5789998330000127299--99999987999887789999999999987899999999978799783214788389999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 981999999999865999998889998899999699999981969999999
Q 002476 611 AYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFL 661 (917)
Q Consensus 611 a~~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~L 661 (917)
+..|+.++|++|+.+||+++. +|..|.||||+|+.+++ ++++|
T Consensus 193 ~~~g~~~~v~~Ll~~Gad~~~------~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 193 VIEKHVFVVELLLLHGASVQV------LNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp HHTTCHHHHHHHHHTTCCSCC------CCTTSCCSGGGSCTTCH--HHHHT
T ss_pred HHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCC--HHHHH
T ss_conf 986889999999987889988------69999999999883784--99999
No 8
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=167.96 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=123.5
Q ss_pred CCCCCHHHHHHHCC--CCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCC
Q ss_conf 76663879999819--928999999973-999874467998067899970999999999986999-----7533799993
Q 002476 534 PEAKDSFFELTLKS--KLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLS-----LDFRDKYGWT 605 (917)
Q Consensus 534 ~~~~~~L~~a~~~~--~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~-----in~~D~~G~T 605 (917)
..+.++|+.++..+ +.. +++.|++ |++++..|..|.||||+|+..|+.+++++|+..|++ +|.+|..|+|
T Consensus 136 ~~g~t~L~~A~~~g~~~~~--~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t 213 (364)
T 3ljn_A 136 CKGQTALHWCVGLGPEYLE--MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213 (364)
T ss_dssp ESCCCHHHHHHHSCGGGHH--HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred CCCCCHHHHHHHCCCCHHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 8898789999974996699--99999976999736288999899999982989999999860554123555232889980
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999981999999999865999998889998899999699999981969999999870000032334434
Q 002476 606 ALHWAAYYGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA 676 (917)
Q Consensus 606 pLH~Aa~~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~~~l~ 676 (917)
|||+|+..|+.+++++|+++|++++. +|..|.|||++|+..|+.+++++|+++|++....+....
T Consensus 214 ~L~~A~~~g~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 278 (364)
T 3ljn_A 214 HLHWAILINWEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278 (364)
T ss_dssp TTHHHHTTTCHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTB
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 99999975988999999986999888------799999889999983829999999974880554157566
No 9
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=167.76 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHC-CC-CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6663879999819928999999973-99-987446799806789997099999999998699975337999939999998
Q 002476 535 EAKDSFFELTLKSKLKEWLLERVVE-GS-KTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 612 (917)
Q Consensus 535 ~~~~~L~~a~~~~~l~~~Lv~~Ll~-ga-~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~Aa~ 612 (917)
.+.++|+.++..++.. +++.|+. ++ +++..+..|.||||+|+..|+.+++++|+..|+++|.+|..|+||||+|+.
T Consensus 89 ~g~t~L~~A~~~~~~~--~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 166 (253)
T 1yyh_A 89 MGRTPLHAAVSADAQG--VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166 (253)
T ss_dssp TSCCHHHHHHHHTCHH--HHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred CCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9998999999869889--99999975898754568899869999988483999999997699988809999989999998
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 199999999986599999888999889999969999998196999999987000003233
Q 002476 613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFND 672 (917)
Q Consensus 613 ~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~ 672 (917)
.|+.+++++|+..|++++. +|..|.||+|+|+..|+.+++++|+++|++.+..+
T Consensus 167 ~~~~~~v~~Ll~~ga~~~~------~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d 220 (253)
T 1yyh_A 167 VNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220 (253)
T ss_dssp HTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 6888999999976999998------68999999999998799999999998699933002
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=165.20 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 76663879999819928999999973-99987446799806789997099999999998699975337999939999998
Q 002476 534 PEAKDSFFELTLKSKLKEWLLERVVE-GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 612 (917)
Q Consensus 534 ~~~~~~L~~a~~~~~l~~~Lv~~Ll~-ga~~n~~d~~G~T~LHlAA~~G~~~~v~~LL~~Ga~in~~D~~G~TpLH~Aa~ 612 (917)
..+.++|+.++..++.. +++.|++ |++++..+..|.||||+|+..|+.+++++|+.+|+++|.+|..|+||||+|+.
T Consensus 243 ~~g~t~L~~A~~~g~~~--~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 320 (437)
T 1n11_A 243 VQGVTPLHLAAQEGHAE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320 (437)
T ss_dssp TTCCCHHHHHHHTTCHH--HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCHH--HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89997999999778899--9999996699999879999979999998499999999984875678879999889999998
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1999999999865999998889998899999699999981969999999870000032334434
Q 002476 613 YGREKMVVDLLSAGAKPNLVTDPTSQNPGGLNAADIASKKGFDGLAAFLSEQALVAQFNDMTLA 676 (917)
Q Consensus 613 ~G~~~iv~~LL~~GA~~~~~tD~~~~d~~G~TpL~lA~~~G~~~iv~~Lle~ga~~~l~~~~l~ 676 (917)
+|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|+++|++.+..+....
T Consensus 321 ~g~~~~v~~Ll~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~ 378 (437)
T 1n11_A 321 YGNIKLVKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 378 (437)
T ss_dssp SSCSHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred CCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 6949999999966999998------899998899999987819999999977689988789989
Done!