Your job contains 1 sequence.
>002477
MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY
KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK
ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV
SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA
RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL
GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY
VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGG
IKTTANHEDIELPDESDSEEEEKVEIAQKDVPSAVYGGLARKREGSEEDGDNSADANGKD
GESRLGALARLKRLKQA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002477
(917 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 3525 0. 1
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 1173 1.3e-200 2
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 1391 2.9e-148 2
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 1350 1.2e-140 2
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 1364 2.1e-139 1
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 1364 2.1e-139 1
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 1358 9.2e-139 1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 1357 1.2e-138 1
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 1353 3.1e-138 1
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 1349 8.3e-138 1
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 1349 8.3e-138 1
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 1345 2.2e-137 1
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 1204 2.7e-128 2
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 1073 1.5e-108 1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 1073 1.5e-108 1
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr... 1060 3.5e-107 1
GENEDB_PFALCIPARUM|PFL1735c - symbol:PFL1735c "hypothetic... 516 3.8e-70 2
UNIPROTKB|Q8I564 - symbol:PFL1735c "RNA-processing protei... 516 3.8e-70 2
CGD|CAL0005248 - symbol:orf19.2893 species:5476 "Candida ... 397 2.4e-48 3
UNIPROTKB|Q5A1C6 - symbol:SYF1 "Putative uncharacterized ... 397 2.4e-48 3
SGD|S000002824 - symbol:SYF1 "Member of the NineTeen Comp... 334 6.1e-34 3
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 244 3.8e-17 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 217 1.3e-16 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 230 2.3e-16 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 230 2.4e-16 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 234 4.4e-16 2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 234 4.4e-16 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 228 2.4e-15 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 218 3.4e-14 2
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 218 3.7e-14 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 208 4.6e-14 3
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 215 9.5e-14 1
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 214 1.1e-13 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 175 2.2e-13 2
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 130 1.0e-12 2
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 193 2.8e-12 2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 188 3.4e-12 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 154 5.3e-12 2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 193 7.0e-12 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 154 3.3e-11 3
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 154 3.3e-11 3
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 146 4.8e-11 2
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 118 6.7e-10 2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 118 6.7e-10 2
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 118 1.1e-09 2
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 190 2.3e-09 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 190 2.3e-09 2
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 140 4.5e-09 2
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 185 4.8e-09 2
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 185 4.9e-09 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 120 7.6e-09 2
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 182 1.0e-08 2
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 110 1.2e-08 2
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 123 1.3e-08 2
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 107 5.2e-08 2
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 108 2.1e-07 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 113 2.2e-07 2
FB|FBgn0003559 - symbol:su(f) "suppressor of forked" spec... 118 1.2e-06 2
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 160 6.6e-06 2
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha... 157 9.5e-06 2
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 109 9.5e-06 2
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 124 1.1e-05 2
UNIPROTKB|A5PJN6 - symbol:UTP6 "Uncharacterized protein" ... 134 1.1e-05 2
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 131 1.3e-05 3
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 118 1.4e-05 2
ZFIN|ZDB-GENE-040426-1997 - symbol:cstf3 "cleavage stimul... 97 1.5e-05 2
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 95 2.0e-05 2
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 95 2.0e-05 2
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 95 2.0e-05 2
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 95 2.0e-05 2
FB|FBgn0036828 - symbol:CG6841 species:7227 "Drosophila m... 111 2.0e-05 2
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 131 2.1e-05 2
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 130 2.5e-05 3
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 101 2.6e-05 2
FB|FBgn0039182 - symbol:CG5728 species:7227 "Drosophila m... 139 3.4e-05 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 148 3.8e-05 2
UNIPROTKB|O94906 - symbol:PRPF6 "Pre-mRNA-processing fact... 130 5.0e-05 3
UNIPROTKB|F1RJ62 - symbol:UTP6 "Uncharacterized protein" ... 122 5.2e-05 2
ASPGD|ASPL0000068414 - symbol:AN7447 species:162425 "Emer... 130 6.1e-05 2
POMBASE|SPAC6F12.17 - symbol:rna14 "mRNA cleavage and pol... 105 6.3e-05 2
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 130 6.4e-05 3
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 133 9.2e-05 1
TAIR|locus:2086132 - symbol:HCF107 "high chlorophyll fluo... 131 9.3e-05 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 150 9.8e-05 2
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 149 0.00014 2
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 130 0.00016 3
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 130 0.00019 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 141 0.00041 2
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 90 0.00052 3
UNIPROTKB|E1BGY7 - symbol:CSTF3 "Uncharacterized protein"... 93 0.00054 2
DICTYBASE|DDB_G0280363 - symbol:DDB_G0280363 species:4468... 127 0.00059 1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 140 0.00083 2
TAIR|locus:2040565 - symbol:AT2G36730 species:3702 "Arabi... 120 0.00099 1
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 3525 (1245.9 bits), Expect = 0., P = 0.
Identities = 685/900 (76%), Positives = 757/900 (84%)
Query: 1 MAISKXXXXXXXXXXXXXXXXRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSY 60
MAISK RN FSLKLWWRYL+AK E+PFKKRF+IYERALKALPGSY
Sbjct: 1 MAISKDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY 60
Query: 61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120
KLW+AYL ERL IV+NLP+THP+Y++LNNTFER LVTMHKMPRIW+MYL+TLT Q+ IT+
Sbjct: 61 KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITR 120
Query: 121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
RRTFDRALCALPVTQHDRIWE YL FV Q GIPIETSLRVYRRYL YDPSHIE+FIEFL
Sbjct: 121 TRRTFDRALCALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFL 180
Query: 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240
VKS+ WQE+AERLASVLNDD+FYSIKGKTKH+LWLELC+LL HA ISGLNVDAIIRGG
Sbjct: 181 VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGG 240
Query: 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
IRKFTDEVG LWTSLADYYIR+ L EKARDI+EEGMM VVTVRDFSVIFD YS+FEE V
Sbjct: 241 IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV 300
Query: 301 SAKMAKPDLSVXXXXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360
+ KM S +RL+ NLS+ E +K+LNGFWL+D DVDLRLA
Sbjct: 301 AKKMEMMSSSDEEDENEENGVEDDEEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA 360
Query: 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVG 420
RLE LMNRRP LANSVLLRQNPHNVEQWHRRVKIFEGN KQILTYTEAVRTVDPMKAVG
Sbjct: 361 RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG 420
Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
KPHTLWVAFAKLYE +KD+ N RVIFDKAVQVNYKTVDHLAS+WCEWAEMELRHKNFKGA
Sbjct: 421 KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA 480
Query: 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540
LELMRRATA P+VEVRRRVAADGNEPVQMKLH+SLRLW+FYVDLEESLG LESTRAVYE+
Sbjct: 481 LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK 540
Query: 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600
ILDLRIATPQII+NYA LLEE+KYFEDAF+VYERGVKIFKYPHVKDIWVTYL+KFVKRYG
Sbjct: 541 ILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG 600
Query: 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660
KTKLERARELFE+AV AP+DAV+ LYLQYAKLEEDYGLAKRAMKVY++ATK VP +KL
Sbjct: 601 KTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKL 660
Query: 661 GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720
MYEIYI+RAAEIFGVP+TREIYEQAIESGLP KDVK MC+K+AELE+SLGEIDRAR +Y
Sbjct: 661 EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY 720
Query: 721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK 780
++SQFADPRSD EFWN+WHEFEV HGNEDT+REMLRIKRSVSASYSQTHFILPE +MQK
Sbjct: 721 KYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK 780
Query: 781 DQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGN-AKDSSRKVGFVSAGVESQT-- 837
D+ L ++DAK +LK+AG+ EDEMAALERQL AKD R+VGFVSAGV SQ+
Sbjct: 781 DKLLDVEDAKGELKRAGLPEDEMAALERQLLSTTTPTEPAKDGGRRVGFVSAGVISQSGE 840
Query: 838 DGGIKTTANHXXXXX--XXXXXXXXXXXXXIAQKDVPSAVYGGLARKR-EGSEEDGDNSA 894
+ G T N I+QK+VP+AV+GGLARKR E EE G++ A
Sbjct: 841 NEGKPVTGNGEDIELPDESDDESDGDDHVEISQKEVPAAVFGGLARKRDEDGEEAGEDGA 900
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 1173 (418.0 bits), Expect = 1.3e-200, Sum P(2) = 1.3e-200
Identities = 220/473 (46%), Positives = 330/473 (69%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT---KQIL-TYTEA 409
+ D+ + R E+L+ R+P L NSV+L+QNP+NV++W +RV ++ NPT K I+ T+T++
Sbjct: 336 EFDIIIERYENLIQRQPLLLNSVMLKQNPNNVQEWLKRVNLYS-NPTPNVKMIIQTFTDS 394
Query: 410 VRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469
++++DP A GK T++ FA YE ++ AR+IF+ ++ VN+KT+D L++++C++AE
Sbjct: 395 IKSIDPQLAKGKLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLSTLYCDYAE 454
Query: 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529
MEL+H+N++ A+E+++R T P ++ + NEPVQ +L KS+++WTFYVDLEES G
Sbjct: 455 MELKHRNYEKAIEILKRGTVSPK---KQNTIIEENEPVQKRLFKSIKIWTFYVDLEESFG 511
Query: 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589
+T+++YE+++ L++ TPQII+N+A LEE+KYFED F+ YE GV++F +PHV+DIW+
Sbjct: 512 TFHNTKSIYEKMIQLKVVTPQIILNFAKYLEENKYFEDMFKAYEHGVQLFLFPHVQDIWI 571
Query: 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649
TYL+KF++RY KLER R+LFE + P YL YA EE YGLA+ +M VYD+
Sbjct: 572 TYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMAVYDR 631
Query: 650 ATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709
A K+V ++ MY +YI RA+E FGV +TREI+ +AIE LPD+ V+ MCLK+A++EK
Sbjct: 632 AAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQ-LPDQYVRDMCLKFADMEKK 690
Query: 710 LGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQ 768
GEIDRAR IY+ SQF+DPR+ +WN W +FE HGNEDTF+EMLRI+RSV ASY +Q
Sbjct: 691 YGEIDRARSIYIHGSQFSDPRTSMFYWNTWSDFEKLHGNEDTFKEMLRIRRSVQASYITQ 750
Query: 769 THFI-LPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAK 820
+ L L KD + DD + KQ +++ ++Q A+ +K
Sbjct: 751 NPTLALLNKLNNKDDK---DDKNQQQKQQQQQQEKQQQQQQQQQQASTLTKSK 800
Score = 791 (283.5 bits), Expect = 1.3e-200, Sum P(2) = 1.3e-200
Identities = 144/282 (51%), Positives = 206/282 (73%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
+NP+S+ W RYL K+ +P K+R IYERA++ LP SYK+WH YL+ER ++ I
Sbjct: 40 KNPYSVNCWLRYLEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILE 99
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
+E +N FER+LV + KMPRIWI Y E L Q+ IT R+TFDRAL ALPVTQH RIW
Sbjct: 100 NSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIW 159
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y +F+ + IP T +RVY+RYLK P +E++IE+L+K K WQE +L +L++ +
Sbjct: 160 NEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVNQLIKLLDNVK 219
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F SIKGK++H WL+LC++L+++ +I+G++VD++IR GI KF+D++G+LW L+DYYI+
Sbjct: 220 FKSIKGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKLWCYLSDYYIQ 279
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAK 303
FEKARDIFEE + +V T RDFS I++SY+QFE+ +++AK
Sbjct: 280 LAQFEKARDIFEEALTSVGTARDFSFIWESYTQFEDSLIAAK 321
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 1391 (494.7 bits), Expect = 2.9e-148, Sum P(2) = 2.9e-148
Identities = 282/537 (52%), Positives = 366/537 (68%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
D++LRLAR E L+ RRP L NSVLLRQNPHNV +WH+RVK++EG P + I TYTEAV+T+
Sbjct: 321 DLELRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGQPRQIINTYTEAVQTI 380
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
DPMKA GKPH+LWV+FAK YE + I +AR IF+KA +VNYK VD LA++WCE+ EMELR
Sbjct: 381 DPMKATGKPHSLWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELR 440
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
H+N+ A ++R+ATA P+ R+ D +EPVQ +++KSL++W+ DLEESLG +S
Sbjct: 441 HENYDQASRILRKATAIPA---RKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQS 497
Query: 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593
T+AVY+RI+DLRIATPQIIINYA+ LEEH YFE++F+ YERG+ +FK+P+V DIW TYL+
Sbjct: 498 TKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFKWPNVHDIWNTYLT 557
Query: 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
KF+ RYG KLERAR+LFE A++ PA K +YL YAKLEE+YGLA+ AM VY++AT A
Sbjct: 558 KFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAA 617
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
V E+ M+ IYI RAAEI+GV TR IY++AIE LPD+ + MCL++A++E LGEI
Sbjct: 618 VEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEV-LPDEHARDMCLRFADMESKLGEI 676
Query: 714 DRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QTHFI 772
DRAR IY + SQ DPR FW W EFE+ HGNEDT REMLRIKRSV A+Y+ Q +F+
Sbjct: 677 DRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFM 736
Query: 773 LPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRKVGF 828
+ L ++ D Q+GV D+M LE+ QLA A K K+ F
Sbjct: 737 SSQMLKATGNATGTVSDLAPG--QSGV--DDMRLLEQKAQQLAAEAERDKPKPKE-KILF 791
Query: 829 VSAGVESQTDGGIKTTANHXXXXXXXXXXXXXXXXXX------IAQKDVPSAVYGGL 879
V + + AN + QK VP+AV+GGL
Sbjct: 792 VRSDTSRSELAELAKQANPDEIDIDDDDDEDEDAEDAEPEEVQLEQKSVPTAVFGGL 848
Score = 894 (319.8 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 244/710 (34%), Positives = 370/710 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RNP+S+K W RY+ K+ A +IYERALK LPGSYKLW+ YL ER VK IT
Sbjct: 25 RNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITD 84
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERALV MHKMPRIWI Y + + SQ IT++RRTFDRAL ALP+TQH RIW
Sbjct: 85 PGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRIW 144
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF +P ET++RVYRRYLK P + E++I++L EAA RLA+V+ND+
Sbjct: 145 PLYLRFARNLPLP-ETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAALRLAAVVNDEN 203
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S +GK+ ++LW ELCDL++ + +++ LNV AIIRGG+ +FTD++G+LW S+ADYYIR
Sbjct: 204 FVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKLWCSMADYYIR 263
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM-AKPDLSVXXXXXXXXX 320
FEKARD++EE ++TVVTVRDF+ +FDSY+QFEE M++AKM +L
Sbjct: 264 SGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELGQDEDDDIDLE 323
Query: 321 XXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDV-KDVDLRLARLEHLMNRRPELANSV--- 376
+ + V N +H+ K V L + ++N E ++
Sbjct: 324 LRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGQPRQIINTYTEAVQTIDPM 383
Query: 377 LLRQNPHNVEQWHRRVKIFEGNPT-KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET 435
PH++ W K +E N T E V+ K V +W + ++
Sbjct: 384 KATGKPHSL--WVSFAKFYEDNEQIDDARTIFEKATKVN-YKQVDDLAAVWCEYGEMELR 440
Query: 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV 495
+++ A I KA + + ++ S +E ++++ +K A E S+
Sbjct: 441 HENYDQASRILRKATAIPARKAEYFDS-----SE-PVQNRVYKSLKVWSMLADLEESLGT 494
Query: 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI--II 553
+ A + + +++ + + + LEE ES +A YER + L P + I
Sbjct: 495 FQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKA-YERGIAL-FKWPNVHDIW 552
Query: 554 NYAL--LLEEH--KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609
N L ++ + K E A ++E+ + + K I++ Y +K + YG + A
Sbjct: 553 NTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLY-AKLEEEYGLAR--HAMA 609
Query: 610 LFENAVETAPADAVKPLYLQYAK-LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668
++E A A+ ++ Y K E YG+ +Y +A + +P+ M +
Sbjct: 610 VYERATAAVEAEERHQMFNIYIKRAAEIYGVT-HTRAIYQKAIEVLPDEHARDMCLRFAD 668
Query: 669 RAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK-YAELEKSLGEIDRAR 717
+++ + + R IY S + D V A + + E E G D R
Sbjct: 669 MESKLGEIDRARAIYSYC--SQICDPRVTAHFWQTWKEFEIRHGNEDTIR 716
Score = 78 (32.5 bits), Expect = 2.9e-148, Sum P(2) = 2.9e-148
Identities = 39/145 (26%), Positives = 60/145 (41%)
Query: 34 LVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFER 93
L K + F+ + YE + P S K W Y+ + S K++ LN +ER
Sbjct: 4 LSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSV---------LNMIYER 54
Query: 94 ALVTMHKMPRIWIMYLETLTSQ---KFIT-----KARRTFDRALCALPVTQHDRIWEIYL 145
AL + ++W YL Q K IT + +RAL + + RIW Y
Sbjct: 55 ALKELPGSYKLWYNYLRERRKQVKGKCITDPGYEEVNNCHERALVFMH--KMPRIWIDYC 112
Query: 146 RFVEQEGIPIETSLRVYRRYLKYDP 170
+F+ + I S R + R L+ P
Sbjct: 113 QFMVSQ-CKITRSRRTFDRALRALP 136
Score = 53 (23.7 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + IDD D+ + A E E LE++ P A G KD
Sbjct: 801 LAELAKQANPDEIDIDDDDDEDEDAEDAEPEEVQLEQKSVPTAVFGGLKD 850
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 1350 (480.3 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 263/491 (53%), Positives = 346/491 (70%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
DV+LRL+R E+LM RR L NSVLLRQNPHNV +WH+RV ++E P + I TYTEAV+TV
Sbjct: 325 DVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTYTEAVQTV 384
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
P +AVGK HTLWV FAK YE + +ARV+F++ +V Y V+ LA++WCEWAEMELR
Sbjct: 385 QPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCEWAEMELR 444
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAA-DGNEPVQMKLHKSLRLWTFYVDLEESLGNLE 532
+ F+ AL+LM+RATA P +R++A D E VQ +LH+SL++W+ Y DLEES G +
Sbjct: 445 QQQFEAALKLMQRATAMP----KRKIAYYDDTETVQARLHRSLKVWSMYADLEESFGTFK 500
Query: 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
+ +AVYERI+DL+I TPQIIINY + LEEH YFE+A+R YE+G+ +FK+P+V DIW +YL
Sbjct: 501 TCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYL 560
Query: 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652
+KF++RYG TKLERAR+LFE ++ P + K YL YAKLEE++GLA+ AM VYD+AT
Sbjct: 561 TKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATS 620
Query: 653 AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE 712
AV E MY I+I +AAEI+G+P+TREIYE+AIES LP+++++ MC+K+AELE LGE
Sbjct: 621 AVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIES-LPEQNMRHMCVKFAELETKLGE 679
Query: 713 IDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QTHF 771
+DRAR IY SQ DPR +FW W EFEV HGNEDT REMLRIKRSV A+Y+ Q +
Sbjct: 680 VDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNM 739
Query: 772 ILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSA 831
+ ++L + + DA AG D M LE + AA K + +
Sbjct: 740 MAAQFLSTNNGAAA--DAG-----AGAGPDAMRLLEEKARQAAAESKQKPIEKAASNIMF 792
Query: 832 GVESQTDGGIK 842
V +T GG K
Sbjct: 793 -VRGETQGGAK 802
Score = 836 (299.3 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
Identities = 227/683 (33%), Positives = 359/683 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN +S+K W RY+ K +AP ++YERALK LPGSYK+WH YL R V+ T
Sbjct: 28 RNAYSVKHWLRYIDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTD 87
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +N+ FERALV MHKMPRIW+ Y +TSQ IT+ R FDRAL ALP+TQH RIW
Sbjct: 88 PMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIW 147
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YL+FV + +P ET+LRVYRRYLK P E+++++L ++ EAA++LA +++++
Sbjct: 148 PLYLQFVRRFEMP-ETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQLAHIVDNEH 206
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ H+LW ELCDL++ + ++ LNVDAIIRGG+R++TD++G LW SLADYY+R
Sbjct: 207 FVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYTDQLGHLWNSLADYYVR 266
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
LF++ARDI+EE + TV TVRDF+ +FD Y+QFEE+ ++ +M +
Sbjct: 267 SGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFEELSLNRRMEQ---------VAANEA 317
Query: 322 XXXXXXIRLDVNLSMAEFVKK----VLNGFWL----HDVKDVDLRLARLE----HLMNRR 369
I +++ LS E++ + +LN L H+V + R+ E +++
Sbjct: 318 ATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTY 377
Query: 370 PELANSVLLRQNPHNVEQ-WHRRVKIFEGN-PTKQILTYTEAVRTVDPMKAVGKPHTLWV 427
E +V +Q + W K +E N + E V+ +K V +W
Sbjct: 378 TEAVQTVQPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVK-VEDLAAVWC 436
Query: 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
+A++ + A + +A + + + + E + L H++ K + M A
Sbjct: 437 EWAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDT--ETVQARL-HRSLK--VWSMY-A 490
Query: 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
E S + A + +K+ + + + LEE E+ RA YE+ + L
Sbjct: 491 DLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRA-YEKGISL-FK 548
Query: 548 TPQI--IINYAL--LLEEH--KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601
P + I N L LE + E A ++E+ + H K ++ Y +K + +G
Sbjct: 549 WPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLY-AKLEEEHGL 607
Query: 602 TKLERARELFENAVETAPADAVKPLY-LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660
+ A +++ A D + +Y + K E YGL R ++Y++A +++P
Sbjct: 608 AR--HAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLP-RTREIYEKAIESLPEQNMR 664
Query: 661 GMYEIYIARAAEIFGVPKTREIY 683
M + ++ V + R IY
Sbjct: 665 HMCVKFAELETKLGEVDRARAIY 687
Score = 47 (21.6 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 868 QKDVPSAVYGGLARKREGSEEDGD 891
QK +P+ V+G L +G + DG+
Sbjct: 861 QKAIPAKVFGSLKPSNQG-DSDGE 883
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 278/538 (51%), Positives = 368/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL+L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALKLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VYD+A
Sbjct: 560 YLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPPRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + AN + Q+ VP+AV+G L
Sbjct: 795 IFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 837 (299.7 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 223/678 (32%), Positives = 351/678 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 325
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 326 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV 385
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGN-PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432
PH + W K +E N E V+ K V ++W +L
Sbjct: 386 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVN-FKQVDDLASVWCQCGEL 442
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492
+++ A + KA + + ++ + +E ++++ +K A E S
Sbjct: 443 ELRHENYDEALKLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEES 496
Query: 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552
+ + A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 497 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVS 554
Query: 553 INYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606
++ L + +Y E A ++E+ + + K +++ Y ++ + +G +
Sbjct: 555 DIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--H 611
Query: 607 ARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665
A +++ A PA + + E YG+ +Y +A + + + M
Sbjct: 612 AMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLR 670
Query: 666 YIARAAEIFGVPKTREIY 683
+ ++ + + R IY
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 37 (18.1 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + + + + +D+ + + +E+ LE+Q PAA G+ K+
Sbjct: 807 LAELAQQANPEEIQLGEDEDE-DEMDLEPNEVR-LEQQSVPAAVFGSLKE 854
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 278/538 (51%), Positives = 368/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL+L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALKLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VYD+A
Sbjct: 560 YLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPPRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + AN + Q+ VP+AV+G L
Sbjct: 795 IFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 837 (299.7 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 223/678 (32%), Positives = 351/678 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 325
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 326 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV 385
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGN-PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432
PH + W K +E N E V+ K V ++W +L
Sbjct: 386 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVN-FKQVDDLASVWCQCGEL 442
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492
+++ A + KA + + ++ + +E ++++ +K A E S
Sbjct: 443 ELRHENYDEALKLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEES 496
Query: 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552
+ + A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 497 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVS 554
Query: 553 INYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606
++ L + +Y E A ++E+ + + K +++ Y ++ + +G +
Sbjct: 555 DIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--H 611
Query: 607 ARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665
A +++ A PA + + E YG+ +Y +A + + + M
Sbjct: 612 AMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLR 670
Query: 666 YIARAAEIFGVPKTREIY 683
+ ++ + + R IY
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 37 (18.1 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + + + + +D+ + + +E+ LE+Q PAA G+ K+
Sbjct: 807 LAELAQQANPEEIQLGEDEDE-DEMDLEPNEVR-LEQQSVPAAVFGSLKE 854
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
Identities = 277/538 (51%), Positives = 367/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVPLHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 560 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEV-LSDEHAREMCLRFADMECKL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPSRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + AN + Q+ VP+AV+G L
Sbjct: 795 ILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 841 (301.1 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 223/677 (32%), Positives = 349/677 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 325
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 326 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVPLHQGRPREIINTYTEAVQTV 385
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY 433
PH + W K +E N T K V ++W +L
Sbjct: 386 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGELE 443
Query: 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493
+++ A + KA + + ++ + +E ++++ +K A E S+
Sbjct: 444 LRHENYDQALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEESL 497
Query: 494 EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553
+ A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVSD 555
Query: 554 NYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607
++ L + +Y E A ++E+ + + K +++ Y ++ + +G + A
Sbjct: 556 IWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--HA 612
Query: 608 RELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666
++E A PA + + E YG+ +Y +A + + + M +
Sbjct: 613 MAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRSIYQKAIEVLSDEHAREMCLRF 671
Query: 667 IARAAEIFGVPKTREIY 683
++ + + R IY
Sbjct: 672 ADMECKLGEIDRARAIY 688
Score = 37 (18.1 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + + + + +D+ + + +E+ LE+Q PAA G+ K+
Sbjct: 807 LAELAQQANPEEIELGEDEDE-DEMDLEPNEVR-LEQQSVPAAVFGSLKE 854
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
Identities = 277/538 (51%), Positives = 367/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 560 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPSQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPSRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + AN + Q+ VP+AV+G L
Sbjct: 795 ILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 835 (299.0 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 223/677 (32%), Positives = 349/677 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 325
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 326 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV 385
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY 433
PH + W K +E N T K V ++W +L
Sbjct: 386 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWCECGELE 443
Query: 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493
+++ A + KA + + ++ + +E ++++ +K A E S+
Sbjct: 444 LRHENYDQALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEESL 497
Query: 494 EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553
+ A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVSD 555
Query: 554 NYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607
++ L + +Y E A ++E+ + + K +++ Y ++ + +G + A
Sbjct: 556 IWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--HA 612
Query: 608 RELFENAVETAPADAVKPLYLQYAK-LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666
++E A ++ Y K E YG+ +Y +A + + + M +
Sbjct: 613 MAVYERATRAVEPSQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLRF 671
Query: 667 IARAAEIFGVPKTREIY 683
++ + + R IY
Sbjct: 672 ADMECKLGEIDRARAIY 688
Score = 37 (18.1 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + + + + +D+ + + +E+ LE+Q PAA G+ K+
Sbjct: 807 LAELAQQANPEEIELGEDEDE-DEMDLEPNEVR-LEQQSVPAAVFGSLKE 854
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 276/538 (51%), Positives = 366/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L+ RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +AR+I +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 560 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECRL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPSRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + AN + Q+ VP+AV+G L
Sbjct: 795 ILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 834 (298.6 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
Identities = 221/674 (32%), Positives = 344/674 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM-AKPDLSVXXXXXXXXX 320
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM +L
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLE 328
Query: 321 XXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDV-KDVDLRLARLEHLMNRRPELANSV--- 376
+ + V N +H+ K V L R ++N E +V
Sbjct: 329 LRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPF 388
Query: 377 LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY 436
PH + W K +E N T K V ++W +L +
Sbjct: 389 KATGKPHTL--WVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGELELRH 446
Query: 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496
++ A + KA + + ++ + +E ++++ +K A E S+
Sbjct: 447 ENYDQALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEESLGTF 500
Query: 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
+ A + + +++ + + + LEE ES +A YER + L P + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVSDIWS 558
Query: 557 LLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
L + +Y E A ++E+ + + K +++ Y ++ + +G + A +
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--HAMAV 615
Query: 611 FENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
+E A PA + + E YG+ +Y +A + + + M +
Sbjct: 616 YERATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLRFADM 674
Query: 670 AAEIFGVPKTREIY 683
+ + + R IY
Sbjct: 675 ECRLGEIDRARAIY 688
Score = 37 (18.1 bits), Expect = 4.0e-85, Sum P(2) = 4.0e-85
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 773 LPEYLMQKD-QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L E Q + + + + + +D+ + + +E+ LE+Q PAA G+ K+
Sbjct: 807 LAELAQQANPEEIELGEDEDE-DEMDLEPNEVR-LEQQSVPAAVFGSLKE 854
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 275/538 (51%), Positives = 366/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 321 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 379
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 380 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 439
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 440 ELRHENYDEALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 496
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 497 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 556
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 557 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 616
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 617 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKL 675
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT +EMLRI+RSV A+Y+ Q
Sbjct: 676 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQV 735
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 736 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPLRAQSK 791
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + N + Q+ VP+AV+G L
Sbjct: 792 ILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 849
Score = 839 (300.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 224/678 (33%), Positives = 351/678 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 27 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 86
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 87 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 146
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 147 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 205
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 206 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 265
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 266 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 322
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 323 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV 382
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGN-PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432
PH + W K +E N E V+ K V ++W +L
Sbjct: 383 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVN-FKQVDDLASVWCQCGEL 439
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492
+++ A + KA + + ++ + +E ++++ +K A E S
Sbjct: 440 ELRHENYDEALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEES 493
Query: 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552
+ + A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 494 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVS 551
Query: 553 INYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606
++ L + +Y E A ++E+ + + K +++ Y ++ + +G +
Sbjct: 552 DIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--H 608
Query: 607 ARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665
A ++E A PA + + E YG+ +Y +A + + + M
Sbjct: 609 AMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLR 667
Query: 666 YIARAAEIFGVPKTREIY 683
+ ++ + + R IY
Sbjct: 668 FADMECKLGEIDRARAIY 685
Score = 38 (18.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 773 LPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L + + ++ +L D+ +D++ E LE+Q PAA G+ K+
Sbjct: 807 LAQQVNPEEIQLGEDEDEDEMDL----EPNEVRLEQQSVPAAVFGSLKE 851
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 275/538 (51%), Positives = 366/538 (68%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L++RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +ARVI +KA +VN+K VD LAS+WC+ E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDEALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 560 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECKL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT +EMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPLRAQSK 794
Query: 826 VGFVSAGVESQTDGGIKTTAN----HXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGL 879
+ FV + + + N + Q+ VP+AV+G L
Sbjct: 795 ILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSL 852
Score = 839 (300.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 224/678 (33%), Positives = 351/678 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXX 321
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM + +
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM---ETASELGREEEDDV 325
Query: 322 XXXXXXIRLDVNLSMAEFV-KKVL---NGFWLHDV-KDVDLRLARLEHLMNRRPELANSV 376
R + +S + VL N +H+ K V L R ++N E +V
Sbjct: 326 DLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTV 385
Query: 377 ---LLRQNPHNVEQWHRRVKIFEGN-PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432
PH + W K +E N E V+ K V ++W +L
Sbjct: 386 DPFKATGKPHTL--WVAFAKFYEDNGQLDDARVILEKATKVN-FKQVDDLASVWCQCGEL 442
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492
+++ A + KA + + ++ + +E ++++ +K A E S
Sbjct: 443 ELRHENYDEALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEES 496
Query: 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552
+ + A + + +++ + + + LEE ES +A YER + L P +
Sbjct: 497 LGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVS 554
Query: 553 INYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606
++ L + +Y E A ++E+ + + K +++ Y ++ + +G +
Sbjct: 555 DIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--H 611
Query: 607 ARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665
A ++E A PA + + E YG+ +Y +A + + + M
Sbjct: 612 AMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLR 670
Query: 666 YIARAAEIFGVPKTREIY 683
+ ++ + + R IY
Sbjct: 671 FADMECKLGEIDRARAIY 688
Score = 38 (18.4 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 773 LPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKD 821
L + + ++ +L D+ +D++ E LE+Q PAA G+ K+
Sbjct: 810 LAQQVNPEEIQLGEDEDEDEMDL----EPNEVRLEQQSVPAAVFGSLKE 854
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
Identities = 267/484 (55%), Positives = 350/484 (72%)
Query: 351 DVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAV 410
DV D++LRLAR E L+ RRP L NSVLLRQNPH+V +WH+RV + +G P + I TYTEAV
Sbjct: 324 DV-DLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV 382
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+TVDP KA GKPHTLWVAFAK YE + +AR+I +KA +V++K VD LAS+WCE E+
Sbjct: 383 QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGEL 442
Query: 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
ELRH+N+ AL L+R+ATA P+ RR DG+EPVQ +++KSL++W+ DLEESLG
Sbjct: 443 ELRHENYDQALRLLRKATALPA---RRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGT 499
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ST+AVY+RILDLRIATPQI+INYA+ LEEHKYFE++F+ YERG+ +FK+P+V DIW T
Sbjct: 500 FQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWST 559
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
YL+KF+ RYG KLERAR+LFE A++ P K LYL YA+LEE++GLA+ AM VY++A
Sbjct: 560 YLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERA 619
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
T+AV ++ M+ IYI RAAEI+GV TR IY++AIE L D+ + MCL++A++E L
Sbjct: 620 TRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV-LSDEHAREMCLRFADMECRL 678
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QT 769
GEIDRAR IY F SQ DPR+ FW W +FEV HGNEDT REMLRI+RSV A+Y+ Q
Sbjct: 679 GEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQV 738
Query: 770 HFILPEYLMQKDQRL-SIDDAKDKLKQAGVHEDEMAALER---QLAPAANNGNAKDSSRK 825
+F+ + L ++ D Q+G+ D+M LE+ QLA A + K
Sbjct: 739 NFMASQMLKVSGSATGTVSDLAPG--QSGM--DDMKLLEQRAEQLAAEAERDQPSRAQSK 794
Query: 826 VGFV 829
+ FV
Sbjct: 795 ILFV 798
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 221/674 (32%), Positives = 344/674 (51%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
RN FS+K W RY+ K+ AP + +YERALK LP SYKLW+ YL R + VK+ +T
Sbjct: 30 RNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD 89
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
P YE +NN ERA V MHKMPR+W+ Y + L Q +T RRTFDRAL ALP+TQH RIW
Sbjct: 90 PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIW 149
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
+YLRF+ +P ET++R YRR+LK P E++IE+L S EAA+RLA+V+ND++
Sbjct: 150 PLYLRFLRSHPLP-ETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDER 208
Query: 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261
F S GK+ ++LW ELCDL++ + ++ LNVDAIIRGG+ +FTD++G+LW SLADYYIR
Sbjct: 209 FVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIR 268
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM-AKPDLSVXXXXXXXXX 320
FEKARD++EE + TV+TVRDF+ +FDSY+QFEE M++AKM +L
Sbjct: 269 SGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLE 328
Query: 321 XXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDV-KDVDLRLARLEHLMNRRPELANSV--- 376
+ + V N +H+ K V L R ++N E +V
Sbjct: 329 LRLARFEQLIGRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPF 388
Query: 377 LLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY 436
PH + W K +E N T K V ++W +L +
Sbjct: 389 KATGKPHTL--WVAFAKFYEDNGQLDDARIILEKATKVSFKQVDDLASVWCECGELELRH 446
Query: 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR 496
++ A + KA + + ++ + +E ++++ +K A E S+
Sbjct: 447 ENYDQALRLLRKATALPARRAEYF-----DGSE-PVQNRVYKSLKVWSMLADLEESLGTF 500
Query: 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556
+ A + + +++ + + + LEE ES +A YER + L P + ++
Sbjct: 501 QSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA-YERGISL-FKWPNVSDIWS 558
Query: 557 LLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
L + +Y E A ++E+ + + K +++ Y ++ + +G + A +
Sbjct: 559 TYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLY-AQLEEEWGLAR--HAMAV 615
Query: 611 FENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
+E A PA + + E YG+ +Y +A + + + M +
Sbjct: 616 YERATRAVEPAQQYDMFNIYIKRAAEIYGVT-HTRGIYQKAIEVLSDEHAREMCLRFADM 674
Query: 670 AAEIFGVPKTREIY 683
+ + + R IY
Sbjct: 675 ECRLGEIDRARAIY 688
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 1204 (428.9 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 239/464 (51%), Positives = 321/464 (69%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
D+DLR+ R E LM+RRP L N VLLRQNP+NV +W +RV ++ N + + TYT A+ +
Sbjct: 351 DLDLRMLRFEQLMDRRPFLVNDVLLRQNPNNVIEWEKRVALWGDNNVEIVNTYTAAIAAI 410
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
+P KAVGK LWV +AK YE D+ AR+IF+KAV+V +K+V+ LA WCEWAEMELR
Sbjct: 411 NPKKAVGKFSELWVNYAKFYERGGDLDTARIIFEKAVKVPFKSVNELAETWCEWAEMELR 470
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
+NF A+E+M +AT P D Q ++HKS +LW+FYVDL ES+ ++E
Sbjct: 471 SENFDKAVEIMAKATQAPKKSTVDYF--DETLSPQQRIHKSWKLWSFYVDLVESVSSIEE 528
Query: 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593
T+ VYERI +LRIATPQ ++NYA LLEEHKYFE++F+VYERG+ +F YP ++W YL+
Sbjct: 529 TKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERGLDLFTYPVAFELWNLYLT 588
Query: 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
K V R K +ER R+LFE A++ P +PLYL Y LEE+ GLA+ AM++Y++AT+A
Sbjct: 589 KAVDR--KIGIERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARHAMRIYERATRA 646
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
V + ++ M+E YI ++A FG+P TR IYE+AI + LPD + K MCLK+AE+E+ LGEI
Sbjct: 647 VSDEDRFEMFEFYITKSASNFGLPSTRPIYERAI-AALPDHEAKEMCLKFAEMERRLGEI 705
Query: 714 DRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QTHFI 772
DRAR IY ASQF DPR++ FW +W FEV HGNEDTF+EMLRIKRSV A Y+ +FI
Sbjct: 706 DRARAIYGHASQFCDPRTNAPFWQKWEAFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFI 765
Query: 773 LPEYLMQKDQRLSI-DDAKDKLKQAGVHE--DEMAALERQL-AP 812
+ + + QR ++A ++ E D MAALERQ AP
Sbjct: 766 ASQAIARSQQRAPEGEEATAAAEREMDTETTDAMAALERQARAP 809
Score = 658 (236.7 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 198/666 (29%), Positives = 327/666 (49%)
Query: 46 FVIYERALKALPGSYKLWHAYLIERLSIVKNL-PITH-PEYETLNNTFERALVTMHKMPR 103
F + ERA K LP SYKLW YL R +KN I + E++ +N FERAL+ ++KMPR
Sbjct: 69 FQVMERACKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPR 128
Query: 104 IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163
IW MYL + Q +T+ RRTFDRAL ALPVTQH+RIW++Y F +T+++++
Sbjct: 129 IWEMYLTFMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFARSASG--QTAVKIWA 186
Query: 164 RYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTT 223
RY++ P + E++I LV+ + +A +R +L++ +F S +GK+ +LW E+ DLL +
Sbjct: 187 RYMQIHPENAEEYINLLVEMGHYTDAIKRYMEILDNPRFQSREGKSNFQLWTEMVDLLVS 246
Query: 224 HATEI-----SGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278
A +I +G++VDAI+R GI +F D+ G+LW LA Y+I + FEKARD+FEEG+ T
Sbjct: 247 KAKKIETGPQTGIDVDAILRSGIDRFADQRGKLWAGLATYWITKGNFEKARDVFEEGITT 306
Query: 279 VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXXXXXXXXXX-IRLDVNLSMA 337
V+TVRDF++IFDSY +FEE ++ + M + +R + +
Sbjct: 307 VMTVRDFTLIFDSYVEFEESIIGSLMEAAAVRADNGKADEEADFDLDLRMLRFEQLMDRR 366
Query: 338 EF-VKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANS---VLLRQNPHNV-----EQW 388
F V VL ++V + + R+A + E+ N+ + NP E W
Sbjct: 367 PFLVNDVLLRQNPNNVIEWEKRVALWG---DNNVEIVNTYTAAIAAINPKKAVGKFSELW 423
Query: 389 HRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446
K +E G+ + + +AV+ P K+V + W +A++ ++ A I
Sbjct: 424 VNYAKFYERGGDLDTARIIFEKAVKV--PFKSVNELAETWCEWAEMELRSENFDKAVEIM 481
Query: 447 DKAVQVNYK-TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505
KA Q K TVD+ + + HK++K + + S+E ++V
Sbjct: 482 AKATQAPKKSTVDYFDETL---SPQQRIHKSWKLWSFYVDLVESVSSIEETKKVY---ER 535
Query: 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE---EH 562
++++ + Y +L E E + VYER LDL P + L L +
Sbjct: 536 IFELRIATPQTVVN-YANLLEEHKYFEESFKVYERGLDL-FTYPVAFELWNLYLTKAVDR 593
Query: 563 KYFEDAFR-VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET-APA 620
K + R ++E+ + + +++ Y + G + A ++E A +
Sbjct: 594 KIGIERLRDLFEQALDGCPPKFARPLYLMY-GNLEEERGLAR--HAMRIYERATRAVSDE 650
Query: 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR 680
D + K ++GL +Y++A A+P+HE M + + + + R
Sbjct: 651 DRFEMFEFYITKSASNFGLPS-TRPIYERAIAALPDHEAKEMCLKFAEMERRLGEIDRAR 709
Query: 681 EIYEQA 686
IY A
Sbjct: 710 AIYGHA 715
Score = 76 (31.8 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 42/138 (30%), Positives = 65/138 (47%)
Query: 22 RNPFSLKLWWRYLVAKRE--APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
RNP ++K W Y+ K++ +++ FV R L AL S L ++ER K LP
Sbjct: 27 RNPGTIKPWLAYIEYKQQNGTLYEQAFV--GRPLDALIISI-LNDFQVMERAC--KQLPR 81
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
++ ++ + F T H R I Y +F K F+RAL L + R
Sbjct: 82 SYKLWK-MYLEFR----TKHLKNRNAIKY-----RAEF-QKVNTLFERALILL--NKMPR 128
Query: 140 IWEIYLRFVEQEGIPIET 157
IWE+YL F+ Q+ + +T
Sbjct: 129 IWEMYLTFMLQQPLVTQT 146
Score = 75 (31.5 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 33/100 (33%), Positives = 40/100 (40%)
Query: 24 PFSLKLWWRYL-----------VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLS 72
P S KLW YL K A F+K ++ERAL L ++W YL L
Sbjct: 80 PRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPRIWEMYLTFMLQ 139
Query: 73 IVKNLPITHPEYETLNNTFERAL----VTMHKMPRIWIMY 108
P TF+RAL VT H RIW +Y
Sbjct: 140 --------QPLVTQTRRTFDRALRALPVTQHN--RIWKLY 169
Score = 58 (25.5 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 48 IYERALKALPGSYKLWHAYLIERL---SIVKNLPITHPE----YETLNN--TFERALVTM 98
+YE+ L PG+ K W AY+ + ++ + + P LN+ ERA +
Sbjct: 20 VYEQDLLRNPGTIKPWLAYIEYKQQNGTLYEQAFVGRPLDALIISILNDFQVMERACKQL 79
Query: 99 HKMPRIWIMYLETLT 113
+ ++W MYLE T
Sbjct: 80 PRSYKLWKMYLEFRT 94
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 225/537 (41%), Positives = 323/537 (60%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
D++ R +HLM R+ EL NSVLLRQNPHNV +W RV I+EGN KQI T+ EAV++V
Sbjct: 332 DLEWMFQRYQHLMERKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKSV 391
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
+P VGK LW+ AKLYE D+ AR F+ AV + V LA++WC +AEME++
Sbjct: 392 NPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMK 451
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
HK K AL +M+RA P + + + VQ ++H+S LW Y D EE G +ES
Sbjct: 452 HKRAKAALTVMQRACVVP-----KPGDYENMQSVQARVHRSPILWAMYADYEECCGTVES 506
Query: 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593
R VY+++++LR+A+PQ+I+NYA+ LEE++YFE AF+ YE+G+ +FK+P V DIW TYL
Sbjct: 507 CRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLV 566
Query: 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
KF+KRYG KLERAR+LFE +E P K ++L YAKLEE++GLA+ A+ +Y++A
Sbjct: 567 KFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSG 626
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
V + MY IYI + E++G+ + R I+E+AI S LP+ +AM L+YA+LE ++GEI
Sbjct: 627 VDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAI-SELPEDKSRAMSLRYAQLETTVGEI 685
Query: 714 DRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFIL 773
DRAR IY A++ +DP+ +FW+ W FEV HGNE T R+MLR++RSV ASY+ + L
Sbjct: 686 DRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYN-VNVTL 744
Query: 774 PEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLA-PAANNGNAKDSSRKVGFVS-- 830
M+ D A+ K ++ + M +L++Q P+ G+ S G +S
Sbjct: 745 TSVQMRVD-------AERKAQETTTSSNPMDSLDQQQQQPSDGAGSITQVSMNKGNISFV 797
Query: 831 AGVESQTDGGIKTTANHXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGLARKREGSE 887
G + I+ K VP+ ++G L E E
Sbjct: 798 RGAGKTVQQNTTENPDEIDLDEDDDDEEDDGGDADISVKVVPAQIFGNLKLAEEEEE 854
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 230/703 (32%), Positives = 360/703 (51%)
Query: 22 RNPFSLKLWWRYLVAK--REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
RNP S+ W RY+ K ++P K+ F+IYERAL SYKLW+ YL R S + N
Sbjct: 35 RNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCP 94
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
T + L +T+ER L+ +HKMPRIWI Y E + + IT+ RR FDRAL +LPVTQH R
Sbjct: 95 TDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMR 154
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW +Y+ F+ +P ET++RVYRRYLK +P ED++E+L++ EAA+ L +++N
Sbjct: 155 IWTLYIGFLTSHDLP-ETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQ 213
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
DQ S KG+T H+LW +LCDL++ + +I LNVDAIIR GI ++TD+VG LW SLADYY
Sbjct: 214 DQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYY 273
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXX 319
IR FE+ARD++EE + V TVRDF+ ++D+Y+ FEE VS M + + S
Sbjct: 274 IRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDL 333
Query: 320 XXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379
++ E + VL H+V + R+ E N++ E +
Sbjct: 334 EWMFQRYQHLME---RKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKS 390
Query: 380 QNPH-NV----EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE 434
NP V + W K++E N T + V + +W A+A++
Sbjct: 391 VNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEM 450
Query: 435 TYKDIANARVIFDKAVQV-------NYKTVD---HLASI-WCEWAEMELRHKNFKGALEL 483
+K A + +A V N ++V H + I W +A+ E G +E
Sbjct: 451 KHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYE----ECCGTVES 506
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
R+ + +E+R VA+ P QM ++ ++ F LEE+ E YE+ +
Sbjct: 507 CRKVY-DKMIELR--VAS----P-QMIMNYAM----F---LEEN-EYFELAFQAYEKGIA 550
Query: 544 LRIATPQI--IINYALL--LEEH--KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597
L P + I N L+ ++ + K E A ++E+ ++ H K I++ Y +K +
Sbjct: 551 L-FKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLY-AKLEE 608
Query: 598 RYGKTKLERARELFENA---VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654
+G + A ++ A V+ A ++ +Y++ K++E YG+A+ ++++A +
Sbjct: 609 EHGLAR--HALSIYNRACSGVDRADMHSMYNIYIK--KVQEMYGIAQ-CRPIFERAISEL 663
Query: 655 PNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697
P + M Y + + + R IY A E P VK
Sbjct: 664 PEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK 706
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 225/537 (41%), Positives = 323/537 (60%)
Query: 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV 413
D++ R +HLM R+ EL NSVLLRQNPHNV +W RV I+EGN KQI T+ EAV++V
Sbjct: 332 DLEWMFQRYQHLMERKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKSV 391
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473
+P VGK LW+ AKLYE D+ AR F+ AV + V LA++WC +AEME++
Sbjct: 392 NPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMK 451
Query: 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533
HK K AL +M+RA P + + + VQ ++H+S LW Y D EE G +ES
Sbjct: 452 HKRAKAALTVMQRACVVP-----KPGDYENMQSVQARVHRSPILWAMYADYEECCGTVES 506
Query: 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593
R VY+++++LR+A+PQ+I+NYA+ LEE++YFE AF+ YE+G+ +FK+P V DIW TYL
Sbjct: 507 CRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQAYEKGIALFKWPGVFDIWNTYLV 566
Query: 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
KF+KRYG KLERAR+LFE +E P K ++L YAKLEE++GLA+ A+ +Y++A
Sbjct: 567 KFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRACSG 626
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
V + MY IYI + E++G+ + R I+E+AI S LP+ +AM L+YA+LE ++GEI
Sbjct: 627 VDRADMHSMYNIYIKKVQEMYGIAQCRPIFERAI-SELPEDKSRAMSLRYAQLETTVGEI 685
Query: 714 DRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFIL 773
DRAR IY A++ +DP+ +FW+ W FEV HGNE T R+MLR++RSV ASY+ + L
Sbjct: 686 DRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASYN-VNVTL 744
Query: 774 PEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLA-PAANNGNAKDSSRKVGFVS-- 830
M+ D A+ K ++ + M +L++Q P+ G+ S G +S
Sbjct: 745 TSVQMRVD-------AERKAQETTTSSNPMDSLDQQQQQPSDGAGSITQVSMNKGNISFV 797
Query: 831 AGVESQTDGGIKTTANHXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGLARKREGSE 887
G + I+ K VP+ ++G L E E
Sbjct: 798 RGAGKTVQQNTTENPDEIDLDEDDDDEEDDGGDADISVKVVPAQIFGNLKLAEEEEE 854
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 230/703 (32%), Positives = 360/703 (51%)
Query: 22 RNPFSLKLWWRYLVAK--REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
RNP S+ W RY+ K ++P K+ F+IYERAL SYKLW+ YL R S + N
Sbjct: 35 RNPTSVNCWQRYIDHKLQNKSPAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCP 94
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
T + L +T+ER L+ +HKMPRIWI Y E + + IT+ RR FDRAL +LPVTQH R
Sbjct: 95 TDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMR 154
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW +Y+ F+ +P ET++RVYRRYLK +P ED++E+L++ EAA+ L +++N
Sbjct: 155 IWTLYIGFLTSHDLP-ETTIRVYRRYLKMNPKAREDYVEYLIERDQIDEAAKELTTLVNQ 213
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
DQ S KG+T H+LW +LCDL++ + +I LNVDAIIR GI ++TD+VG LW SLADYY
Sbjct: 214 DQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYY 273
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVXXXXXXXX 319
IR FE+ARD++EE + V TVRDF+ ++D+Y+ FEE VS M + + S
Sbjct: 274 IRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEEREVSIMMQEVEQSGDPEEEVDL 333
Query: 320 XXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379
++ E + VL H+V + R+ E N++ E +
Sbjct: 334 EWMFQRYQHLME---RKNELMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQIETFKEAVKS 390
Query: 380 QNPH-NV----EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE 434
NP V + W K++E N T + V + +W A+A++
Sbjct: 391 VNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEM 450
Query: 435 TYKDIANARVIFDKAVQV-------NYKTVD---HLASI-WCEWAEMELRHKNFKGALEL 483
+K A + +A V N ++V H + I W +A+ E G +E
Sbjct: 451 KHKRAKAALTVMQRACVVPKPGDYENMQSVQARVHRSPILWAMYADYE----ECCGTVES 506
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
R+ + +E+R VA+ P QM ++ ++ F LEE+ E YE+ +
Sbjct: 507 CRKVY-DKMIELR--VAS----P-QMIMNYAM----F---LEEN-EYFELAFQAYEKGIA 550
Query: 544 LRIATPQI--IINYALL--LEEH--KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597
L P + I N L+ ++ + K E A ++E+ ++ H K I++ Y +K +
Sbjct: 551 L-FKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLY-AKLEE 608
Query: 598 RYGKTKLERARELFENA---VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654
+G + A ++ A V+ A ++ +Y++ K++E YG+A+ ++++A +
Sbjct: 609 EHGLAR--HALSIYNRACSGVDRADMHSMYNIYIK--KVQEMYGIAQ-CRPIFERAISEL 663
Query: 655 PNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697
P + M Y + + + R IY A E P VK
Sbjct: 664 PEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK 706
>POMBASE|SPBC211.02c [details] [associations]
symbol:cwf3 "complexed with Cdc5 protein Cwf3"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
NextBio:20801873 Uniprot:Q9P7R9
Length = 790
Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
Identities = 198/420 (47%), Positives = 290/420 (69%)
Query: 350 HDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA 409
+D +D +A LE ++++RP N VLLRQN +NV++W RRVK E + K + YT+A
Sbjct: 317 NDELSIDFHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLEDDSEKVVQVYTDA 376
Query: 410 VRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469
++ V+P A G L+ FA+ YE + D+ +R+IF+KA V YKTV+ LA +W +WAE
Sbjct: 377 IKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVPYKTVNELAQVWIDWAE 436
Query: 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAA-DGNEPVQMKLHKSLRLWTFYVDLEESL 528
MELRH+NF A +L+ A P + ++ D + Q++LHKS ++W +Y+DLEES+
Sbjct: 437 MELRHQNFDAARKLIGDAVHAPR---KSHISFFDESLSPQVRLHKSSKIWMYYLDLEESV 493
Query: 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
G +E+TR +Y+R+ +L+IATPQ+++NYA LLEE+ YFED+F++YERGV +F YP ++W
Sbjct: 494 GTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELW 553
Query: 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648
YL+KFVKRY T +ER R+LFE A+E P + K +YL YA EE +G AKR++ + +
Sbjct: 554 NLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISILE 613
Query: 649 QATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEK 708
+A V ++L +Y + + + A +GV TR +YE+AIES L D +VK MCL++AE+E
Sbjct: 614 KAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIES-LSDSEVKDMCLRFAEMET 672
Query: 709 SLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN-EDTFREMLRIKRSVSASYS 767
LGEIDRAR IY+ SQ+ DPR +T++W W EFE+ +GN E+T +EMLRIKRSV +S
Sbjct: 673 KLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKEMLRIKRSVQTKFS 732
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 207/684 (30%), Positives = 360/684 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNL-PIT 80
R+P+SLK W RY+ + +KR +++ERA LPGSYK+W +YL R++ V++L P
Sbjct: 27 RDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLELRVAHVEHLNPYF 86
Query: 81 HPE-YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
H E + ++N+ FER+L+ +HKMP IW +YL+ L Q +TK R TF+ AL ALPVTQHD
Sbjct: 87 HAEAFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTKIRCTFNSALRALPVTQHDD 146
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199
IW+++ ++ E G + VYRRY++ +P IE++IE L K LW EAA + +LN
Sbjct: 147 IWDMFTKYAEDIGGLF--CIHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNR 204
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259
F S K K+ +++WLE +L+ H ++V+ + R GI++F+D+ G+LWT LA YY
Sbjct: 205 PVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSDQAGKLWTYLAQYY 264
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKM------AKPDLSVXX 313
IR +EKAR F EGM ++TVR+F++IFD++ +FEE +SA++ A +LS+
Sbjct: 265 IRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEFEEQWLSARVEASSGNANDELSIDF 324
Query: 314 XXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVK---DVDLRLARL--EHLMNR 368
DV L + + V WL VK D ++ ++ + + N
Sbjct: 325 HMAWLEKILDKRPLYINDVLLR--QNINNVDE--WLRRVKFLEDDSEKVVQVYTDAIKNV 380
Query: 369 RPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVA 428
P+LA+ L + ++ R + F+ +I+ + +A P K V + +W+
Sbjct: 381 NPKLAHGSLGKL----FSEFARFYENFDDLEQSRII-FEKATHV--PYKTVNELAQVWID 433
Query: 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-HKNFKGALELMRRA 487
+A++ +++ AR + AV K+ H+ S + E ++R HK+ K + +
Sbjct: 434 WAEMELRHQNFDAARKLIGDAVHAPRKS--HI-SFFDESLSPQVRLHKSSKIWMYYLDLE 490
Query: 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
+ ++E R++ + ++K+ + ++ Y +L E E + +YER + L +
Sbjct: 491 ESVGTIETTRKLY---DRVFELKI-ATPQVVVNYANLLEENAYFEDSFKIYERGVAL-FS 545
Query: 548 TPQIIINYALLLEEH--KY----FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601
P + L L + +Y E ++E+ ++ K I++ Y + F +++GK
Sbjct: 546 YPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLY-ADFEEKFGK 604
Query: 602 TKLERARELFENAVETAP-ADAVKPLYLQYAKLEEDYG-LAKRAMKVYDQATKAVPNHEK 659
K R+ + E A + AD + + K+ +YG LA R VY++A +++ + E
Sbjct: 605 AK--RSISILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRT--VYEKAIESLSDSEV 660
Query: 660 LGMYEIYIARAAEIFGVPKTREIY 683
M + ++ + + R IY
Sbjct: 661 KDMCLRFAEMETKLGEIDRARLIY 684
>GENEDB_PFALCIPARUM|PFL1735c [details] [associations]
symbol:PFL1735c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 516 (186.7 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 105/378 (27%), Positives = 206/378 (54%)
Query: 433 YETYKDIAN--ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
+++ +IAN I + ++ NYK ++A + +++ K++ +
Sbjct: 647 FKSANEIANIFCAWIEIELLERNYKEALNIARL-----SIDINKKSYNTLYKSSTSILLY 701
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ + + N L ++L + +D+E + G +E+T +++ + +
Sbjct: 702 EDISLNNNLKNKNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVK 761
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+++ A L E KYF ++F+VYE+ + +F YP+V I+V Y++K+++RY + R+L
Sbjct: 762 MVLTLATYLYEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDL 821
Query: 611 FENAV-----ET-APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYE 664
F+ A+ +T P + K ++L YA E +YG K+ + +Y +A + +K+ Y+
Sbjct: 822 FKQAIYGNDNKTFIPKEFAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIKFYK 881
Query: 665 IYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFAS 724
I+I++ + +G+ K RE +E+AI++ L D + +C+ Y ++E L E +R R +Y++ +
Sbjct: 882 IFISKVSRAYGIQKAREAFEEAIQT-LSDDSARQLCMIYIDMEYKLNEYERVRALYIYTA 940
Query: 725 QFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRL 784
Q+ +P +F+ W EFE HGNE+TFREM+RIKRSV +S + + + QK
Sbjct: 941 QYTNPLLYMDFYKDWREFEALHGNENTFREMIRIKRSVLNIFSNSRNNMEDEKQQKANMD 1000
Query: 785 SIDDAKDKLKQAGVHEDE 802
++++ K KLK+ E+E
Sbjct: 1001 ALENTKRKLKEIIEKEEE 1018
Score = 273 (101.2 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 72/273 (26%), Positives = 141/273 (51%)
Query: 37 KREAPFKKR----FVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE-YETLNNTF 91
K++ KKR F IY LK P S+KLW+ Y+ + + ++ ++ + + Y+ +N F
Sbjct: 179 KKKKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIF 238
Query: 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151
++ L+ M+ I+IMY++ L Q+ + K R+ F+ +L + + Q + +WE L F E+
Sbjct: 239 DQCLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKI 298
Query: 152 GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211
+ + +RY+ P I + VK K+++ A +LN + + + +K+
Sbjct: 299 NNKV-INYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKY 357
Query: 212 RLWLELCDLLTTHATEISGLNVDAI--IRGGIRKFT--DEVGRLWTSLADYYIRRELFEK 267
++ E+ LL + + LN D I +R + F + + ++ LA+ +I + K
Sbjct: 358 DIYQEIYKLLNSKGS----LNNDIIHLLRNNLYIFKNYESITSIYILLANNFIYDGRWNK 413
Query: 268 ARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
A D +EEG+ TV DF +FD+Y + ++++
Sbjct: 414 AMDSYEEGISECYTVNDFITLFDNYIEMLKMLI 446
Score = 167 (63.8 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 90/385 (23%), Positives = 168/385 (43%)
Query: 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVD 414
+DL + ++ +L+++R + L+ N +NV W ++ N ++I Y E++R +
Sbjct: 547 IDLYMDKINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSII-NEEEKIHLYDESLRYFE 605
Query: 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMEL 472
GK +++++A Y + N IF A++ N +K+ + +A+I+C W E+EL
Sbjct: 606 KNDYTGKLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Query: 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD--LEESLGN 530
+N+K AL + R S+++ N+ L+KS Y D L +L N
Sbjct: 666 LERNYKEALNIARL-----SIDI--------NKKSYNTLYKSSTSILLYEDISLNNNLKN 712
Query: 531 LESTRAVYERILDLRIATPQIII--NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
+ + + +++ + I + NY + F D F Y K V +
Sbjct: 713 KNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMF-DFF--YHS--KCINVKMVLTL- 766
Query: 589 VTYLSKFVKRYGKTKL---ERARELFENA-VETAPADAVKPLYLQYAKLEEDY--GLAKR 642
TYL + K+Y E+A +F V + + +Y Y L K+
Sbjct: 767 ATYL--YEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQ 824
Query: 643 AMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIES-GLPDKDVKAMC 700
A+ D T +P ++ +Y A +G + K IY++AI PDK +K
Sbjct: 825 AIYGNDNKT-FIPKEFAKHIFLMY-ANFESNYGFIKKELSIYKEAIPFLEEPDK-IKFYK 881
Query: 701 LKYAELEKSLGEIDRARGIYVFASQ 725
+ +++ ++ G I +AR + A Q
Sbjct: 882 IFISKVSRAYG-IQKAREAFEEAIQ 905
Score = 45 (20.9 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 24 PFSLKLWWRYL 34
P+S KLW+ Y+
Sbjct: 203 PYSFKLWYHYI 213
Score = 42 (19.8 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 17/99 (17%), Positives = 42/99 (42%)
Query: 213 LWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIF 272
+WL D + +I L +++ +T ++ ++ S A YY + + +IF
Sbjct: 579 IWLSKIDSIINEEEKIH-LYDESLRYFEKNDYTGKLSDIYISYAYYYYNKNEYTNCINIF 637
Query: 273 EEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311
+ + + + I + + + EI + + K L++
Sbjct: 638 KLALKQNAYFKSANEIANIFCAWIEIELLERNYKEALNI 676
>UNIPROTKB|Q8I564 [details] [associations]
symbol:PFL1735c "RNA-processing protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:AE014188 KO:K12867
RefSeq:XP_001350753.1 ProteinModelPortal:Q8I564
EnsemblProtists:PFL1735c:mRNA GeneID:811399 KEGG:pfa:PFL1735c
EuPathDB:PlasmoDB:PF3D7_1235900 HOGENOM:HOG000283457 Uniprot:Q8I564
Length = 1031
Score = 516 (186.7 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 105/378 (27%), Positives = 206/378 (54%)
Query: 433 YETYKDIAN--ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
+++ +IAN I + ++ NYK ++A + +++ K++ +
Sbjct: 647 FKSANEIANIFCAWIEIELLERNYKEALNIARL-----SIDINKKSYNTLYKSSTSILLY 701
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ + + N L ++L + +D+E + G +E+T +++ + +
Sbjct: 702 EDISLNNNLKNKNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMFDFFYHSKCINVK 761
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+++ A L E KYF ++F+VYE+ + +F YP+V I+V Y++K+++RY + R+L
Sbjct: 762 MVLTLATYLYEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDL 821
Query: 611 FENAV-----ET-APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYE 664
F+ A+ +T P + K ++L YA E +YG K+ + +Y +A + +K+ Y+
Sbjct: 822 FKQAIYGNDNKTFIPKEFAKHIFLMYANFESNYGFIKKELSIYKEAIPFLEEPDKIKFYK 881
Query: 665 IYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFAS 724
I+I++ + +G+ K RE +E+AI++ L D + +C+ Y ++E L E +R R +Y++ +
Sbjct: 882 IFISKVSRAYGIQKAREAFEEAIQT-LSDDSARQLCMIYIDMEYKLNEYERVRALYIYTA 940
Query: 725 QFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRL 784
Q+ +P +F+ W EFE HGNE+TFREM+RIKRSV +S + + + QK
Sbjct: 941 QYTNPLLYMDFYKDWREFEALHGNENTFREMIRIKRSVLNIFSNSRNNMEDEKQQKANMD 1000
Query: 785 SIDDAKDKLKQAGVHEDE 802
++++ K KLK+ E+E
Sbjct: 1001 ALENTKRKLKEIIEKEEE 1018
Score = 273 (101.2 bits), Expect = 3.8e-70, Sum P(2) = 3.8e-70
Identities = 72/273 (26%), Positives = 141/273 (51%)
Query: 37 KREAPFKKR----FVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE-YETLNNTF 91
K++ KKR F IY LK P S+KLW+ Y+ + + ++ ++ + + Y+ +N F
Sbjct: 179 KKKKKKKKRVYDLFCIYAIILKYFPYSFKLWYHYIKDSIEMITDVYYRNKKNYKYINKIF 238
Query: 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151
++ L+ M+ I+IMY++ L Q+ + K R+ F+ +L + + Q + +WE L F E+
Sbjct: 239 DQCLLYMYNFKSIYIMYIQFLYIQRDVKKIRQIFNLSLQNVYLNQQNDLWECQLLFNEKI 298
Query: 152 GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKH 211
+ + +RY+ P I + VK K+++ A +LN + + + +K+
Sbjct: 299 NNKV-INYEYIKRYVTIYPEQIIHLFKHYVKYKMYKNAMITFFYILNSEDNFDLGNFSKY 357
Query: 212 RLWLELCDLLTTHATEISGLNVDAI--IRGGIRKFT--DEVGRLWTSLADYYIRRELFEK 267
++ E+ LL + + LN D I +R + F + + ++ LA+ +I + K
Sbjct: 358 DIYQEIYKLLNSKGS----LNNDIIHLLRNNLYIFKNYESITSIYILLANNFIYDGRWNK 413
Query: 268 ARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300
A D +EEG+ TV DF +FD+Y + ++++
Sbjct: 414 AMDSYEEGISECYTVNDFITLFDNYIEMLKMLI 446
Score = 167 (63.8 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 90/385 (23%), Positives = 168/385 (43%)
Query: 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVD 414
+DL + ++ +L+++R + L+ N +NV W ++ N ++I Y E++R +
Sbjct: 547 IDLYMDKINYLLDQRKTYIADIKLKNNKNNVYIWLSKIDSII-NEEEKIHLYDESLRYFE 605
Query: 415 PMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMEL 472
GK +++++A Y + N IF A++ N +K+ + +A+I+C W E+EL
Sbjct: 606 KNDYTGKLSDIYISYAYYYYNKNEYTNCINIFKLALKQNAYFKSANEIANIFCAWIEIEL 665
Query: 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD--LEESLGN 530
+N+K AL + R S+++ N+ L+KS Y D L +L N
Sbjct: 666 LERNYKEALNIARL-----SIDI--------NKKSYNTLYKSSTSILLYEDISLNNNLKN 712
Query: 531 LESTRAVYERILDLRIATPQIII--NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
+ + + +++ + I + NY + F D F Y K V +
Sbjct: 713 KNNYHTNFNLLSCMKLVSLIIDMEMNYGTIETTLNMF-DFF--YHS--KCINVKMVLTL- 766
Query: 589 VTYLSKFVKRYGKTKL---ERARELFENA-VETAPADAVKPLYLQYAKLEEDY--GLAKR 642
TYL + K+Y E+A +F V + + +Y Y L K+
Sbjct: 767 ATYL--YEKKYFNESFKVYEKALSVFHYPYVYPIYVNYINKYIQRYKDKNISYVRDLFKQ 824
Query: 643 AMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIES-GLPDKDVKAMC 700
A+ D T +P ++ +Y A +G + K IY++AI PDK +K
Sbjct: 825 AIYGNDNKT-FIPKEFAKHIFLMY-ANFESNYGFIKKELSIYKEAIPFLEEPDK-IKFYK 881
Query: 701 LKYAELEKSLGEIDRARGIYVFASQ 725
+ +++ ++ G I +AR + A Q
Sbjct: 882 IFISKVSRAYG-IQKAREAFEEAIQ 905
Score = 45 (20.9 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 24 PFSLKLWWRYL 34
P+S KLW+ Y+
Sbjct: 203 PYSFKLWYHYI 213
Score = 42 (19.8 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 17/99 (17%), Positives = 42/99 (42%)
Query: 213 LWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIF 272
+WL D + +I L +++ +T ++ ++ S A YY + + +IF
Sbjct: 579 IWLSKIDSIINEEEKIH-LYDESLRYFEKNDYTGKLSDIYISYAYYYYNKNEYTNCINIF 637
Query: 273 EEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311
+ + + + I + + + EI + + K L++
Sbjct: 638 KLALKQNAYFKSANEIANIFCAWIEIELLERNYKEALNI 676
>CGD|CAL0005248 [details] [associations]
symbol:orf19.2893 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071007 "U2-type catalytic
step 2 spliceosome" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0071006 "U2-type catalytic step 1
spliceosome" evidence=IEA] [GO:0071008 "U2-type post-mRNA release
spliceosomal complex" evidence=IEA] [GO:0000974 "Prp19 complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 397 (144.8 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 101/309 (32%), Positives = 161/309 (52%)
Query: 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQ----ILTYTEAVRT 412
L L E L++ R L N + LRQN ++++ W R +I E I T T+A+++
Sbjct: 341 LYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKS 400
Query: 413 VDPMKAV----GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468
++P+K V K +W+ + +Y + D A +IF K+V Y D LA ++ W+
Sbjct: 401 INPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWS 460
Query: 469 EMELRHKNFKG--ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526
EM L F A+E++ ++ D ++PVQ ++ KS++LW FY+DL E
Sbjct: 461 EMILGSDKFPETKAIEILDDILYREYSDINY---TDNSKPVQQRIIKSIKLWNFYIDLLE 517
Query: 527 S-------LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579
S L +E Y+ ++ L+IATP+I+IN+A LE +E F V + +KIF
Sbjct: 518 SFIESDNQLKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIF 577
Query: 580 KYPH-VK-DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
+ + +K +IW YL K +K T ER R+LFE ++ A VKP+ L Y + E D
Sbjct: 578 QNDNQIKFEIWNVYLIKAIKHIQLT--ERIRDLFEQSINEIAAYLVKPILLLYYQYELDQ 635
Query: 638 GLAKRAMKV 646
G A+K+
Sbjct: 636 GYTYNAIKI 644
Score = 151 (58.2 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 47/165 (28%), Positives = 87/165 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAP-----FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN 76
++P ++ W Y K A + K F++Y R++K+ P S +LW LI+ L +++
Sbjct: 22 KDPTNISTWISYYNFKSNATSTTSLYNKLFILY-RSVKSNPTSIELWQL-LID-LVLLEQ 78
Query: 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLE--TLTSQ-----KF----ITKARRTF 125
I + +T+ FE AL+ + +IWI + + LTS ++ +T RR F
Sbjct: 79 SQI---QSDTIIEIFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHINKVTYIRRMF 135
Query: 126 DRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
+ L ++P+ H IW +YL+F + G I T++++Y +Y ++ P
Sbjct: 136 NNCLKSIPLVDHILIWPLYLQFADTIG-GI-TAVKIYLKYKQFLP 178
Score = 150 (57.9 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 48/208 (23%), Positives = 97/208 (46%)
Query: 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG--IPIETSLRVYRRYL-------KY 168
+T RR F+ L ++P+ H IW +YL+F + G ++ L+ Y+++L K
Sbjct: 128 VTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLK-YKQFLPLPILQGKE 186
Query: 169 DPS-------HIEDFIEFLVKSKLWQEAAERLASVL-NDDQFYSIKGKTKHRLWLELCDL 220
+ + ++ + I+ L K + + ++ N + + + + L+ + DL
Sbjct: 187 NVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLF-QYIDL 245
Query: 221 LTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280
L + ++ + ++ D +G+L+ Y+ R EK R + +G+
Sbjct: 246 LIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKCC 305
Query: 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPD 308
T++DF++I+DSY QFEE V+ K D
Sbjct: 306 TIKDFTMIYDSYLQFEENQVTEITEKVD 333
Score = 83 (34.3 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 734 EFWNRWHEFEVNHGNEDTFREMLRIKRSV 762
E W W FE+ +G+E +F++MLR KR V
Sbjct: 768 ESWKMWESFEMEYGDELSFKDMLRFKRIV 796
Score = 59 (25.8 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 48/201 (23%), Positives = 82/201 (40%)
Query: 557 LLLEEHKYFEDAFRV------YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
L ++ KYF+ + Y +G+K K +KD + Y S Y + + + E+
Sbjct: 276 LYIKATKYFKSRGNIEKTRYYYNQGIK--KCCTIKDFTMIYDS-----YLQFEENQVTEI 328
Query: 611 FENAVETAPADAVKPLYLQ-YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
E V+ P + LYL + KL +D + MK+ E+ +EI +
Sbjct: 329 TEK-VD--PESDLGSLYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFER---FEIIETQ 382
Query: 670 AAEIFGVPKTREIYEQAIESGLPDKDV-------KAMCLKYAELEKSLGEIDRARGIYVF 722
+ + + QA++S P K V + LKY ++ S G+ A I+
Sbjct: 383 TPDDLNL--LIQTLTQALKSINPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSK 440
Query: 723 A--SQFADPRSDTEFWNRWHE 741
+ SQ+ DP E + W E
Sbjct: 441 SVLSQYIDPDELAELYINWSE 461
Score = 55 (24.4 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 146 RFVEQEGIPIETSLRVYRRY--LKYDPSHIEDFIEFLVKS-KLWQEAAERLASVL-NDDQ 201
+F E + I I + +YR Y + Y + + + ++KS KLW + L S + +D+Q
Sbjct: 468 KFPETKAIEILDDI-LYREYSDINYTDNS-KPVQQRIIKSIKLWNFYIDLLESFIESDNQ 525
Query: 202 FYSIKGKT---KHRLWLELCD--LLTTHATEISGLNVDA----IIRGGIRKFTDEVG--- 249
I+ T +H + L++ ++ A + N ++ ++ F ++
Sbjct: 526 LKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIFQNDNQIKF 585
Query: 250 RLWTSLADYYIRR-ELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSA-KMA 305
+W I+ +L E+ RD+FE+ + + V+ +++ Y + +A K+
Sbjct: 586 EIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQGYTYNAIKIL 645
Query: 306 KPDLSVXXXXXXXXXXXXXXX-XIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356
L+ R ++NLS E K ++ L +++D++
Sbjct: 646 IKSLTEKFTPAQKDHKLSTTNPQQRKEINLSKFEIYKLIM--IELGEIQDIE 695
Score = 47 (21.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 655 PNHEKLGMYEIYIARAAEIF----GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709
P+H LG ++YI +A + F + KTR Y Q I+ KD + Y + E++
Sbjct: 270 PDH--LG--KLYI-KATKYFKSRGNIEKTRYYYNQGIKKCCTIKDFTMIYDSYLQFEEN 323
Score = 45 (20.9 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585
+S GN+E TR Y + + + T I ++ ++ + + FE+ +V E K+ P
Sbjct: 285 KSRGNIEKTRYYYNQGIK-KCCT---IKDFTMIYDSYLQFEEN-QVTEITEKVD--PE-S 336
Query: 586 DIWVTYLSKFVKRYGKTKL 604
D+ YL F K K+
Sbjct: 337 DLGSLYLDDFEKLIDDRKI 355
>UNIPROTKB|Q5A1C6 [details] [associations]
symbol:SYF1 "Putative uncharacterized protein SYF1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0005248 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AACQ01000084 EMBL:AACQ01000083
InterPro:IPR013633 Pfam:PF08424 eggNOG:NOG289100 KO:K12867
RefSeq:XP_715549.1 RefSeq:XP_715605.1 ProteinModelPortal:Q5A1C6
STRING:Q5A1C6 GeneID:3642755 GeneID:3642796 KEGG:cal:CaO19.10411
KEGG:cal:CaO19.2893 Uniprot:Q5A1C6
Length = 845
Score = 397 (144.8 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 101/309 (32%), Positives = 161/309 (52%)
Query: 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQ----ILTYTEAVRT 412
L L E L++ R L N + LRQN ++++ W R +I E I T T+A+++
Sbjct: 341 LYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFERFEIIETQTPDDLNLLIQTLTQALKS 400
Query: 413 VDPMKAV----GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468
++P+K V K +W+ + +Y + D A +IF K+V Y D LA ++ W+
Sbjct: 401 INPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSKSVLSQYIDPDELAELYINWS 460
Query: 469 EMELRHKNFKG--ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526
EM L F A+E++ ++ D ++PVQ ++ KS++LW FY+DL E
Sbjct: 461 EMILGSDKFPETKAIEILDDILYREYSDINY---TDNSKPVQQRIIKSIKLWNFYIDLLE 517
Query: 527 S-------LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579
S L +E Y+ ++ L+IATP+I+IN+A LE +E F V + +KIF
Sbjct: 518 SFIESDNQLKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIF 577
Query: 580 KYPH-VK-DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
+ + +K +IW YL K +K T ER R+LFE ++ A VKP+ L Y + E D
Sbjct: 578 QNDNQIKFEIWNVYLIKAIKHIQLT--ERIRDLFEQSINEIAAYLVKPILLLYYQYELDQ 635
Query: 638 GLAKRAMKV 646
G A+K+
Sbjct: 636 GYTYNAIKI 644
Score = 151 (58.2 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 47/165 (28%), Positives = 87/165 (52%)
Query: 22 RNPFSLKLWWRYLVAKREAP-----FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN 76
++P ++ W Y K A + K F++Y R++K+ P S +LW LI+ L +++
Sbjct: 22 KDPTNISTWISYYNFKSNATSTTSLYNKLFILY-RSVKSNPTSIELWQL-LID-LVLLEQ 78
Query: 77 LPITHPEYETLNNTFERALVTMHKMPRIWIMYLE--TLTSQ-----KF----ITKARRTF 125
I + +T+ FE AL+ + +IWI + + LTS ++ +T RR F
Sbjct: 79 SQI---QSDTIIEIFETALINLSTNHKIWIQFFKYLLLTSSDGDDGEYHINKVTYIRRMF 135
Query: 126 DRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
+ L ++P+ H IW +YL+F + G I T++++Y +Y ++ P
Sbjct: 136 NNCLKSIPLVDHILIWPLYLQFADTIG-GI-TAVKIYLKYKQFLP 178
Score = 150 (57.9 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 48/208 (23%), Positives = 97/208 (46%)
Query: 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG--IPIETSLRVYRRYL-------KY 168
+T RR F+ L ++P+ H IW +YL+F + G ++ L+ Y+++L K
Sbjct: 128 VTYIRRMFNNCLKSIPLVDHILIWPLYLQFADTIGGITAVKIYLK-YKQFLPLPILQGKE 186
Query: 169 DPS-------HIEDFIEFLVKSKLWQEAAERLASVL-NDDQFYSIKGKTKHRLWLELCDL 220
+ + ++ + I+ L K + + ++ N + + + + L+ + DL
Sbjct: 187 NVNKQRNYGMNLHEIIDKLRKFGDVENVMKFYYEIITNPNDYAKLPQPIVYYLF-QYIDL 245
Query: 221 LTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280
L + ++ + ++ D +G+L+ Y+ R EK R + +G+
Sbjct: 246 LIRIKKSFDDDYFETLLTKSLYQYPDHLGKLYIKATKYFKSRGNIEKTRYYYNQGIKKCC 305
Query: 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPD 308
T++DF++I+DSY QFEE V+ K D
Sbjct: 306 TIKDFTMIYDSYLQFEENQVTEITEKVD 333
Score = 83 (34.3 bits), Expect = 2.4e-48, Sum P(3) = 2.4e-48
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 734 EFWNRWHEFEVNHGNEDTFREMLRIKRSV 762
E W W FE+ +G+E +F++MLR KR V
Sbjct: 768 ESWKMWESFEMEYGDELSFKDMLRFKRIV 796
Score = 59 (25.8 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 48/201 (23%), Positives = 82/201 (40%)
Query: 557 LLLEEHKYFEDAFRV------YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
L ++ KYF+ + Y +G+K K +KD + Y S Y + + + E+
Sbjct: 276 LYIKATKYFKSRGNIEKTRYYYNQGIK--KCCTIKDFTMIYDS-----YLQFEENQVTEI 328
Query: 611 FENAVETAPADAVKPLYLQ-YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
E V+ P + LYL + KL +D + MK+ E+ +EI +
Sbjct: 329 TEK-VD--PESDLGSLYLDDFEKLIDDRKILLNDMKLRQNINDLDTWFER---FEIIETQ 382
Query: 670 AAEIFGVPKTREIYEQAIESGLPDKDV-------KAMCLKYAELEKSLGEIDRARGIYVF 722
+ + + QA++S P K V + LKY ++ S G+ A I+
Sbjct: 383 TPDDLNL--LIQTLTQALKSINPLKVVTTNNSKLSGIWLKYVDIYSSRGDFQTADLIFSK 440
Query: 723 A--SQFADPRSDTEFWNRWHE 741
+ SQ+ DP E + W E
Sbjct: 441 SVLSQYIDPDELAELYINWSE 461
Score = 55 (24.4 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 45/232 (19%), Positives = 98/232 (42%)
Query: 146 RFVEQEGIPIETSLRVYRRY--LKYDPSHIEDFIEFLVKS-KLWQEAAERLASVL-NDDQ 201
+F E + I I + +YR Y + Y + + + ++KS KLW + L S + +D+Q
Sbjct: 468 KFPETKAIEILDDI-LYREYSDINYTDNS-KPVQQRIIKSIKLWNFYIDLLESFIESDNQ 525
Query: 202 FYSIKGKT---KHRLWLELCD--LLTTHATEISGLNVDA----IIRGGIRKFTDEVG--- 249
I+ T +H + L++ ++ A + N ++ ++ F ++
Sbjct: 526 LKEIEKVTNAYQHLIKLKIATPRIMINFAQFLESWNQYEQCFNVLHQALKIFQNDNQIKF 585
Query: 250 RLWTSLADYYIRR-ELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSA-KMA 305
+W I+ +L E+ RD+FE+ + + V+ +++ Y + +A K+
Sbjct: 586 EIWNVYLIKAIKHIQLTERIRDLFEQSINEIAAYLVKPILLLYYQYELDQGYTYNAIKIL 645
Query: 306 KPDLSVXXXXXXXXXXXXXXX-XIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356
L+ R ++NLS E K ++ L +++D++
Sbjct: 646 IKSLTEKFTPAQKDHKLSTTNPQQRKEINLSKFEIYKLIM--IELGEIQDIE 695
Score = 47 (21.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 655 PNHEKLGMYEIYIARAAEIF----GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709
P+H LG ++YI +A + F + KTR Y Q I+ KD + Y + E++
Sbjct: 270 PDH--LG--KLYI-KATKYFKSRGNIEKTRYYYNQGIKKCCTIKDFTMIYDSYLQFEEN 323
Score = 45 (20.9 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585
+S GN+E TR Y + + + T I ++ ++ + + FE+ +V E K+ P
Sbjct: 285 KSRGNIEKTRYYYNQGIK-KCCT---IKDFTMIYDSYLQFEEN-QVTEITEKVD--PE-S 336
Query: 586 DIWVTYLSKFVKRYGKTKL 604
D+ YL F K K+
Sbjct: 337 DLGSLYLDDFEKLIDDRKI 355
>SGD|S000002824 [details] [associations]
symbol:SYF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0071008
"U2-type post-mRNA release spliceosomal complex" evidence=IDA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IDA] [GO:0071006
"U2-type catalytic step 1 spliceosome" evidence=IDA] [GO:0000974
"Prp19 complex" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] [GO:0000384 "first
spliceosomal transesterification activity" evidence=IC] [GO:0000349
"generation of catalytic spliceosome for first transesterification
step" evidence=IDA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 SGD:S000002824 EMBL:U33007
EMBL:BK006938 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0000349
GO:GO:0000974 GO:GO:0071006 GO:GO:0071007 GO:GO:0071008
GO:GO:0071004 eggNOG:NOG289100 KO:K12867 OrthoDB:EOG4DBXP7
GeneTree:ENSGT00550000075140 PIR:S69700 RefSeq:NP_010704.1
ProteinModelPortal:Q04048 SMR:Q04048 DIP:DIP-1681N IntAct:Q04048
MINT:MINT-385933 STRING:Q04048 PaxDb:Q04048 PeptideAtlas:Q04048
EnsemblFungi:YDR416W GeneID:852025 KEGG:sce:YDR416W CYGD:YDR416w
HOGENOM:HOG000065931 OMA:ENIRNDE NextBio:970249
Genevestigator:Q04048 GermOnline:YDR416W Uniprot:Q04048
Length = 859
Score = 334 (122.6 bits), Expect = 6.1e-34, Sum P(3) = 6.1e-34
Identities = 87/308 (28%), Positives = 159/308 (51%)
Query: 359 LARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKA 418
+A E L+N N V LRQ+ + VE W +RV + + + ++ Y+EA+ +DP K
Sbjct: 382 MATFESLINLYDIYLNDVALRQDSNLVETWMKRVSL-QKSAAEKCNVYSEAILKIDPRK- 439
Query: 419 VGKPHT---LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475
VG P + LW ++ LY I+ AR ++ ++++V Y ++ L I+ WA+ EL +
Sbjct: 440 VGTPGSFGRLWCSYGDLYWRSNAISTARELWTQSLKVPYPYIEDLEEIYLNWADRELDKE 499
Query: 476 NFKGALELMRRATAEPS-VEVRRRVAADGNE--PVQMKLHKSLRLWTFYVDLEESL---- 528
+ A ++ A P+ E+ +G+ P Q L SLR+W+ Y+D E+
Sbjct: 500 GVERAFSILEDALHVPTNPEILLEKYKNGHRKIPAQTVLFNSLRIWSKYIDYLEAYCPKD 559
Query: 529 GN-----LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583
N T+ Y ++DLR+ TP + N+AL L+ H ++F+VYE+ + +F P
Sbjct: 560 ANSSDKIFNKTKMAYNTVIDLRLITPAMAENFALFLQNHYEVMESFQVYEKTIPLFP-PE 618
Query: 584 VK-DIWVTYLSKFVK-RYGKTKLERARELFENAVETAPADAV--KPLYLQYAKLEEDY-G 638
++ ++W+ YL + E R LFE A++ ++ + K +++ Y+ EE G
Sbjct: 619 IQYELWIEYLEVATSHQLSSLSPEHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEERISG 678
Query: 639 LAKRAMKV 646
L +++++
Sbjct: 679 LISKSIEI 686
Score = 322 (118.4 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 68/243 (27%), Positives = 138/243 (56%)
Query: 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIWVTYL 592
T+ Y ++DLR+ TP + N+AL L+ H ++F+VYE+ + +F P ++ ++W+ YL
Sbjct: 570 TKMAYNTVIDLRLITPAMAENFALFLQNHYEVMESFQVYEKTIPLFP-PEIQYELWIEYL 628
Query: 593 SKFVK-RYGKTKLERARELFENAVETAPADAV--KPLYLQYAKLEEDY-GLAKRAMKVYD 648
+ E R LFE A++ ++ + K +++ Y+ EE GL +++++
Sbjct: 629 EVATSHQLSSLSPEHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEERISGLISKSIEILR 688
Query: 649 QA----TKAVPNH--EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK 702
+ T +V H +L ++ + I++A G TRE+Y++ I+ LP+ +K
Sbjct: 689 RGAVIGTVSVSTHLESRLQLWRMCISKAESTLGPSVTRELYQECIQI-LPNSKAVEFVIK 747
Query: 703 YAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSV 762
+++ E S+GE RAR I + ++ P +TE W+ + FE+ HG+++T+++ML++K+ +
Sbjct: 748 FSDFESSIGETIRAREILAYGAKLLPPSRNTELWDSFEIFELKHGDKETYKDMLKMKKVL 807
Query: 763 SAS 765
++
Sbjct: 808 ESN 810
Score = 96 (38.9 bits), Expect = 6.1e-34, Sum P(3) = 6.1e-34
Identities = 32/137 (23%), Positives = 58/137 (42%)
Query: 22 RNPFSLKLWWRYLVA-KREAPFKKRFV-IYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
+ P ++ W RY+ K E K+ +YER +W Y+ R K +
Sbjct: 32 KTPQNILTWKRYIEYWKEEGRTDKQIRWLYERFCSQFVTDTSIWEDYI--RWESTKEVV- 88
Query: 80 THPEYETLNNTFERALVT-MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E + F+R L + + RI + YLE Q + R +L + H
Sbjct: 89 ---ETSRIFWLFQRCLKSCVRDCDRICLSYLELAIEQYDLAMIRHALASSLMKMEREMHR 145
Query: 139 RIWEIYLRFVEQEGIPI 155
++W+ ++FVE++ +P+
Sbjct: 146 KVWDPVIKFVEEKVLPL 162
Score = 78 (32.5 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 51/223 (22%), Positives = 93/223 (41%)
Query: 87 LNNTFERALVTMHKM-PRIWIMYLETLTSQKFITKARRT-----FDRALC-ALPVTQHDR 139
L+N +E + M+ + P W+ + +L ++ +I++ R ++L L + DR
Sbjct: 283 LDNQYEEFMRQMNGIYPDKWLFLILSL-AKYYISRGRLDSCGDLLKKSLQQTLRYSDFDR 341
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASV- 196
I+ YL F EQE S + + + D +D+ E L E+ L +
Sbjct: 342 IYNFYLLF-EQE-----CSQFILGKLKENDSKFFNQKDWTEKLQAHMATFESLINLYDIY 395
Query: 197 LNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKF--TDEVGRLWTS 254
LND + W++ L + A E + +AI++ RK GRLW S
Sbjct: 396 LNDVALRQDSNLVE--TWMKRVSLQKS-AAEKCNVYSEAILKIDPRKVGTPGSFGRLWCS 452
Query: 255 LADYYIRRELFEKARDIFEEGMMTVVT-VRDFSVIFDSYSQFE 296
D Y R AR+++ + + + D I+ +++ E
Sbjct: 453 YGDLYWRSNAISTARELWTQSLKVPYPYIEDLEEIYLNWADRE 495
Score = 69 (29.3 bits), Expect = 6.1e-34, Sum P(3) = 6.1e-34
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 254 SLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
SLA YYI R + D+ ++ + + DF I++ Y FE+
Sbjct: 308 SLAKYYISRGRLDSCGDLLKKSLQQTLRYSDFDRIYNFYLLFEQ 351
Score = 67 (28.6 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
S+E+ RR A G V L L+LW + ES TR +Y+ + +
Sbjct: 683 SIEILRRGAVIGTVSVSTHLESRLQLWRMCISKAESTLGPSVTRELYQECIQI 735
Score = 49 (22.3 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 29/149 (19%), Positives = 65/149 (43%)
Query: 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVG 420
E++ N ++A +++ P N+ W R ++ + EG KQI E R
Sbjct: 16 ENIRNDE-DVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKQIRWLYE--RFCSQFVT-- 70
Query: 421 KPHTLWVAFAKLYETYKDIANARV--IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478
++W + + T + + +R+ +F + ++ + D + C + +EL + +
Sbjct: 71 -DTSIWEDYIRWESTKEVVETSRIFWLFQRCLKSCVRDCDRI----C-LSYLELAIEQYD 124
Query: 479 GALELMRRATAEPSVEVRRRVAADGNEPV 507
L ++R A A +++ R + +PV
Sbjct: 125 --LAMIRHALASSLMKMEREMHRKVWDPV 151
Score = 42 (19.8 bits), Expect = 2.4e-28, Sum P(3) = 2.4e-28
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 141 WEIYLRFVEQEGIPIETSLR-VYRRYLKY---DPSHIEDFIEF 179
W+ Y+ + ++EG + +R +Y R+ D S ED+I +
Sbjct: 40 WKRYIEYWKEEG-RTDKQIRWLYERFCSQFVTDTSIWEDYIRW 81
Score = 38 (18.4 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 34/149 (22%), Positives = 63/149 (42%)
Query: 31 WRYLVAKREAPFKKRFVIYERALK------ALPGSY-KLWHAYLIERLSIVKNLPITHPE 83
W V+ +++ +K V E LK PGS+ +LW +Y L N T E
Sbjct: 411 WMKRVSLQKSAAEKCNVYSEAILKIDPRKVGTPGSFGRLWCSY--GDLYWRSNAISTARE 468
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEI 143
T + + + + I++ + + ++ + +A + AL +P T + + E
Sbjct: 469 LWT--QSLKVPYPYIEDLEEIYLNWADRELDKEGVERAFSILEDAL-HVP-TNPEILLEK 524
Query: 144 YLRFVEQEGIPIET----SLRVYRRYLKY 168
Y IP +T SLR++ +Y+ Y
Sbjct: 525 YKN--GHRKIPAQTVLFNSLRIWSKYIDY 551
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 244 (91.0 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 93/367 (25%), Positives = 170/367 (46%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ V ++W ++AEME++++ A +
Sbjct: 100 WIKYAQWEESLKEIQRARSIYERALDVDYRNV----TLWLKYAEMEMKNRQVNHARNIWD 155
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPV---QMKLHKSLRLWTFYVDLEESLGN 530
RA T P V E+ VA G+ V M+ + W Y++ E
Sbjct: 156 RAITTLPRVNQFWYKYTYMEEMLGNVA--GSRQVFERWMEWQPEEQAWHSYINFELRYKE 213
Query: 531 LESTRAVYERILDLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-I 587
++ R +Y I L I P + I YA E+H YF A +VYER V+ F H+ + +
Sbjct: 214 VDRARTIY--IALLVIVHPDVKNWIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHL 271
Query: 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG--------- 638
+V + +KF + + + ER R +++ A++ P + L+ Y E+ +G
Sbjct: 272 YVAF-AKFEEN--QKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDII 328
Query: 639 LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698
++KR + Y++ KA P H ++ Y+ RE+YE+AI + P ++ +
Sbjct: 329 VSKRRFQ-YEEEVKANP-HNYDAWFD-YLRLVESDADAETVREVYERAIANVPPIQEKRY 385
Query: 699 ------MCLKYAELEK-SLGEIDRARGIYVFASQFADPRSDT--EFWNRWHEFEVNHGNE 749
+ + YA E+ + +R R +Y + + T + W + +FE+ N
Sbjct: 386 WKRYIYLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNL 445
Query: 750 DTFREML 756
R L
Sbjct: 446 PLARRAL 452
Score = 173 (66.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 93/403 (23%), Positives = 172/403 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELM 484
W+ +A+ E + A+AR ++++AV+ + +H+ ++ +A+ E K F+ +
Sbjct: 235 WIKYARFEEKHCYFAHARKVYERAVE--FFGEEHMDEHLYVAFAKFEENQKEFERVRVIY 292
Query: 485 RRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
+ A P + + N + K R +E+ + + R YE +
Sbjct: 293 KYALDRIPKQDAQNLFK---NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVK 341
Query: 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGK 601
+Y L+E E VYER + K W Y+ ++ Y +
Sbjct: 342 ANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEE 401
Query: 602 TKL---ERARELFENAVETAPAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKA 653
+ ER R++++ +E P ++L YA+ E ++ LA+RA+ K
Sbjct: 402 LEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRALGT--SIGKC 459
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
N KL ++ YI ++ + R++YE+ +E P+ +K+AELE LG+I
Sbjct: 460 PKN--KL--FKGYIELELQLREFDRCRKLYEKFLEFA-PENCTS--WIKFAELETILGDI 512
Query: 714 DRARGIYVFASQFADPRSDTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYS 767
DRAR IY A + PR D W + +FE+ E T +R +L+ + V S
Sbjct: 513 DRARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWIS 570
Query: 768 QTHFILP---EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALE 807
F L E + K +++ ++A ++ E+ + LE
Sbjct: 571 FAQFELSAGKEESLSKCRQI-YEEANKAMRNCEEKEERVMLLE 612
Score = 162 (62.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 99/392 (25%), Positives = 163/392 (41%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
L+VAFAK E K+ RVI+ A+ K +++ + E K F
Sbjct: 271 LYVAFAKFEENQKEFERVRVIYKYALDRIPK--QDAQNLFKNYTIFE---KKFGD----- 320
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER---- 540
RR E + +RR + E V+ H + W Y+ L ES + E+ R VYER
Sbjct: 321 RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDADAETVREVYERAIAN 376
Query: 541 ---ILDLRIATPQII--INYALLLE-EHKYFEDAFRVYERGVKIFKYPHVK----DIWVT 590
I + R I INYAL E E K E +VY+ +++ PH K IW+
Sbjct: 377 VPPIQEKRYWKRYIYLWINYALYEELEAKDPERTRQVYQACIELL--PHKKFTFAKIWLL 434
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
Y ++F R + L AR ++ P + L+ Y +LE R K+Y++
Sbjct: 435 Y-AQFEIR--QKNLPLARRALGTSIGKCPKNK---LFKGYIELELQLREFDRCRKLYEKF 488
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLK-YAELEK 708
+ P E + I A I G + + R IYE AI P D+ + K Y + E
Sbjct: 489 LEFAP--ENCTSW-IKFAELETILGDIDRARAIYELAISQ--PRLDMPEVLWKSYIDFEI 543
Query: 709 SLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI-----KRSVS 763
E ++ R +Y + + W + +FE++ G E++ + +I K +
Sbjct: 544 EQEEYEKTRNLY---RRLLQRTQHVKVWISFAQFELSAGKEESLSKCRQIYEEANKAMRN 600
Query: 764 ASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQ 795
+ +L E ++ D K+++++
Sbjct: 601 CEEKEERVMLLESWKTFEEEFGTDSTKERIEK 632
Score = 141 (54.7 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 74/318 (23%), Positives = 131/318 (41%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 340 VKANPHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYA-L 398
Query: 433 YETY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
YE KD R ++ +++ A IW +A+ E+R KN L L RRA
Sbjct: 399 YEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKN----LPLARRALGT 454
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 455 -SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLEFAPENCT 497
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKLERAR 608
I +A L + A +YE + + + +W +Y+ +++ Y KT+ R
Sbjct: 498 SWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYEKTR-NLYR 556
Query: 609 ELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK-AVPNHEKLGMYEIYI 667
L + + L K EE ++ + ++A + E++ + E +
Sbjct: 557 RLLQRTQHVKVWISFAQFELSAGK-EESLSKCRQIYEEANKAMRNCEEKEERVMLLESWK 615
Query: 668 ARAAEIFGVPKTREIYEQ 685
E FG T+E E+
Sbjct: 616 TFEEE-FGTDSTKERIEK 632
Score = 111 (44.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 49/220 (22%), Positives = 98/220 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 112 EIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 169
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAE---RLASVL 197
Y E G + S +V+ R++++ P +I F ++ K A L ++
Sbjct: 170 KYTYMEEMLG-NVAGSRQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYIALLVIV 228
Query: 198 NDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257
+ D +K K+ + E HA ++ V+ G + DE L+ + A
Sbjct: 229 HPD----VKNWIKYARFEEK-HCYFAHARKVYERAVEFF---G-EEHMDE--HLYVAFAK 277
Query: 258 YYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ ++ FE+ R I++ + + +D +F +Y+ FE+
Sbjct: 278 FEENQKEFERVRVIYKYALDRIPK-QDAQNLFKNYTIFEK 316
Score = 80 (33.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 119 IYERALDVDYRNVTLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 170
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + +R+ F+R + P ++ W Y+ F E ++ + +Y
Sbjct: 171 YTYMEEMLGN--VAGSRQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYIAL 224
Query: 166 LKYDPSHIEDFIEF 179
L ++++I++
Sbjct: 225 LVIVHPDVKNWIKY 238
Score = 70 (29.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 26/119 (21%), Positives = 49/119 (41%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
++ER ++ P + WH+Y+ N + + E + + LV +H + WI
Sbjct: 187 VFERWMEWQPEE-QAWHSYI--------NFELRYKEVDRARTIYIALLVIVHPDVKNWIK 237
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS-LRVYRRY 165
Y + AR+ ++RA+ D +Y+ F + E E +RV +Y
Sbjct: 238 YARFEEKHCYFAHARKVYERAVEFFGEEHMDE--HLYVAFAKFEENQKEFERVRVIYKY 294
Score = 63 (27.2 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 41/178 (23%), Positives = 76/178 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+ +
Sbjct: 130 NVTLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVAGS 184
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR + AL V H +
Sbjct: 185 R-------QVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIY----IALLVIVHPDV 232
Query: 141 --WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E++ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 233 KNWIKYARF-EEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAF-AKFEENQKEFERV 288
Score = 51 (23.0 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 85 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 124
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 217 (81.4 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 62/244 (25%), Positives = 120/244 (49%)
Query: 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYE 573
++++W Y EES + R+V+ER L+ + + YA ++K+ +A V++
Sbjct: 77 NIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWD 136
Query: 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633
R V + P V +W Y+ ++ G + AR++FE + +P D + +L + K
Sbjct: 137 RSVTLL--PRVDQLWEKYIY-MEEKLGN--VTGARQIFERWMNWSP-D--QKAWLCFIKF 188
Query: 634 EEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK-TREIYEQAIESGLP 692
E Y +RA +Y+ + V H K+ + Y + G K RE+YE+A++
Sbjct: 189 ELRYNEIERARSIYE---RFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAVDKLAN 245
Query: 693 DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTF 752
D++ + + + +AE E+ E++RAR IY FA E + ++ FE +G+++
Sbjct: 246 DEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYGDKEGI 305
Query: 753 REML 756
+ +
Sbjct: 306 EDAI 309
Score = 189 (71.6 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 81/306 (26%), Positives = 137/306 (44%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKY--FEDAFRVYE 573
+LW Y+ +EE LGN+ R ++ER ++ +P + E +Y E A +YE
Sbjct: 147 QLWEKYIYMEEKLGNVTGARQIFERWMNW---SPDQKAWLCFIKFELRYNEIERARSIYE 203
Query: 574 RGVKIFKYPHVKDIWVTYLSKF-VKRYGKTKLERARELFENAVETAPADA-VKPLYLQYA 631
R V +P V ++ Y +KF +KR G+ KL ARE++E AV+ D + L++ +A
Sbjct: 204 RFVLC--HPKVS-AFIRY-AKFEMKRGGQVKL--AREVYERAVDKLANDEEAEILFVSFA 257
Query: 632 KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG---------VPKTREI 682
+ EE +RA +Y A + +Y+ ++A + +G V K R
Sbjct: 258 EFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQ-YGDKEGIEDAIVGKKRFE 316
Query: 683 YEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEF 742
YE + + D Y LE+S+G DR R IY A P + FW R+
Sbjct: 317 YEDEVSKNPLNYD---SWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYL 373
Query: 743 EVNHG------------NEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAK 790
+N+ D +RE L++ S+++ + EY +++ L++ A+
Sbjct: 374 WINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQ---LNLTGAR 430
Query: 791 DKLKQA 796
L A
Sbjct: 431 QILGNA 436
Score = 188 (71.2 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 86/385 (22%), Positives = 174/385 (45%)
Query: 353 KDVDLRLARLEHLMNRRP---ELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA 409
KD +++L R + N+ P ++ +LR+ E R K + T ++ Y
Sbjct: 4 KDAEVKLPRTTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDST-ELSDYRLR 62
Query: 410 VRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467
R D ++ +WV +AK E+ D A AR ++++A++ Y+ +H ++W ++
Sbjct: 63 RRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYR--NH--TLWVKY 118
Query: 468 AEMELRHKNFKGALELMRRA-TAEPSVE--------VRRRVA-ADGNEPV---QMKLHKS 514
AE E+++K A + R+ T P V+ + ++ G + M
Sbjct: 119 AEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPD 178
Query: 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI--IINYALL-LEEHKYFEDAFRV 571
+ W ++ E +E R++YER + + P++ I YA ++ + A V
Sbjct: 179 QKAWLCFIKFELRYNEIERARSIYERFV---LCHPKVSAFIRYAKFEMKRGGQVKLAREV 235
Query: 572 YERGV-KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630
YER V K+ + ++V++ ++F +R ++ERAR +++ A++ + LY ++
Sbjct: 236 YERAVDKLANDEEAEILFVSF-AEFEERC--KEVERARFIYKFALDHIRKGRAEELYKKF 292
Query: 631 AKLEEDYG---------LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
E+ YG + K+ + D+ +K N++ ++ Y+ + + RE
Sbjct: 293 VAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDS--WFD-YVRLEESVGNKDRIRE 349
Query: 682 IYEQAIESGLPDKDVKAMCLKYAEL 706
IYE+AI + +P K +Y L
Sbjct: 350 IYERAI-ANVPPAQEKRFWQRYIYL 373
Score = 166 (63.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 74/283 (26%), Positives = 127/283 (44%)
Query: 380 QNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM--KAVGKPHT-LWVAFAKLYE 434
+NP N + W V++ E GN + Y A+ V P K + + LW+ +A LYE
Sbjct: 323 KNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYA-LYE 381
Query: 435 TY--KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-P 491
KD+ R ++ + +++ T A IW AE E+R N GA +++ A + P
Sbjct: 382 EIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAP 441
Query: 492 SVEVRRRVAADGNEPVQM----KLHK--------SLRLWTFYVDLEESLGNLESTRAVYE 539
V++ ++ + V + KL++ + W Y + E SL E RA++E
Sbjct: 442 KVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFE 501
Query: 540 -RILDLRIATPQIIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597
I + P+++ + E FE +YER + K H K +W+++ +KF
Sbjct: 502 LAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERLLDRTK--HCK-VWISF-AKFEA 557
Query: 598 RYGKTK---LERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
+ K ++ AR +F+ A T D L + A L ED+
Sbjct: 558 SASEHKEDGIKSARVIFDRA-NTYYKDTTPELEEERATLLEDW 599
Score = 129 (50.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 67/266 (25%), Positives = 116/266 (43%)
Query: 559 LEEHKYFEDAFR-VYERGVKIFKYPHVKDIWVTYLSKFVKR--YGK--TK-LERARELFE 612
LEE +D R +YER + K W Y+ ++ Y + TK +ER R+++
Sbjct: 337 LEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYR 396
Query: 613 NAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT-KAVPNHEKLGMYEIYIARAA 671
++ P K + + L +Y + + + Q A+ K+ +++ YI
Sbjct: 397 ECLKLIPH--TKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMEL 454
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
++ + + R++YE+ +E P+ + A YAE E SL E +RAR I+ A + P
Sbjct: 455 KLVNIDRCRKLYERFLEWS-PE-NCYAW-RNYAEFEISLAETERARAIFELA--ISQPAL 509
Query: 732 DTE--FWNRWHEFEVNHGN-EDT---FREML-RIKR-SVSASYSQTHFILPEYLMQ--KD 781
D W + +FE++ G E T + +L R K V S+++ E+ K
Sbjct: 510 DMPELLWKTYIDFEISEGEFEKTRALYERLLDRTKHCKVWISFAKFEASASEHKEDGIKS 569
Query: 782 QRLSIDDAKDKLKQAGVH-EDEMAAL 806
R+ D A K E+E A L
Sbjct: 570 ARVIFDRANTYYKDTTPELEEERATL 595
Score = 127 (49.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 30/114 (26%), Positives = 60/114 (52%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
+Y + +ERAL ++ +W+ Y E KF+ AR +DR++ LP + D++WE
Sbjct: 93 DYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLP--RVDQLWE 150
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196
Y+ E+ G + + +++ R++ + P + ++ F +K +L ER S+
Sbjct: 151 KYIYMEEKLG-NVTGARQIFERWMNWSPDQ-KAWLCF-IKFELRYNEIERARSI 201
Score = 108 (43.1 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 35/158 (22%), Positives = 70/158 (44%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPGSY--KLWHAYLIERLSIVKNLP 78
+NP + W+ Y+ + K R IYERA+ +P + + W Y+ ++
Sbjct: 323 KNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEE 382
Query: 79 ITHPEYETLNNTFERALV----TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134
I + E + + L T +IW++ E Q +T AR+ A+ P
Sbjct: 383 IETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPK 442
Query: 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172
+I++ Y+ +E + + I+ ++Y R+L++ P +
Sbjct: 443 V---KIFKKYIE-MELKLVNIDRCRKLYERFLEWSPEN 476
Score = 94 (38.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL---LEEHKYFEDAFR--- 570
LW Y+D E S G E TRA+YER+LD R ++ I++A EHK ED +
Sbjct: 515 LWKTYIDFEISEGEFEKTRALYERLLD-RTKHCKVWISFAKFEASASEHK--EDGIKSAR 571
Query: 571 -VYERGVKIFK--YPHVKDIWVTYLSKFV 596
+++R +K P +++ T L ++
Sbjct: 572 VIFDRANTYYKDTTPELEEERATLLEDWL 600
Score = 85 (35.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 48/183 (26%), Positives = 78/183 (42%)
Query: 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE--IYL-----RFVEQEGIPIET 157
W Y+ S + R ++RA+ +P Q R W+ IYL + E E +E
Sbjct: 331 WFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVER 390
Query: 158 SLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKT-----KHR 212
+ VYR LK P H + F +K+W AAE LN I G K +
Sbjct: 391 TRDVYRECLKLIP-HTK--FSF---AKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK 444
Query: 213 LWLELCDLLTTHATEISGLNVDAIIRGGIR--KFTDEVGRLWTSLADYYIRRELFEKARD 270
++ + ++ E+ +N+D + R +++ E W + A++ I E+AR
Sbjct: 445 IFKKYIEM------ELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARA 498
Query: 271 IFE 273
IFE
Sbjct: 499 IFE 501
Score = 72 (30.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 65/296 (21%), Positives = 119/296 (40%)
Query: 29 LWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLI--ERLSIVKNLPITH 81
LW +Y E K +FV +++R++ LP +LW Y+ E+L V
Sbjct: 114 LWVKYA----EFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGA---- 165
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR-ALCALPVTQHDRI 140
FER + + W+ +++ I +AR ++R LC V+ R
Sbjct: 166 ------RQIFERWM-NWSPDQKAWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIR- 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDD 200
Y +F + G ++ + VY R + D ++ E L S + E ER V
Sbjct: 218 ---YAKFEMKRGGQVKLAREVYERAV--DKLANDEEAEILFVS--FAEFEERCKEVERAR 270
Query: 201 QFYSI------KGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRL--- 251
Y KG+ + L+ + + + G+ DAI+ ++ DEV +
Sbjct: 271 FIYKFALDHIRKGRAEE-LYKKFVAFEKQYGDK-EGIE-DAIVGKKRFEYEDEVSKNPLN 327
Query: 252 WTSLADYYIRRELF---EKARDIFEEGMMTVVTVRD------FSVIFDSYSQFEEI 298
+ S DY E ++ R+I+E + V ++ + ++ +Y+ +EEI
Sbjct: 328 YDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEI 383
Score = 62 (26.9 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 41/201 (20%), Positives = 85/201 (42%)
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162
++W+ Y + SQ +AR ++RAL H +W Y F E + + + V+
Sbjct: 79 QVWVKYAKWEESQMDYARARSVWERALEG-EYRNHT-LWVKYAEF-EMKNKFVNNARNVW 135
Query: 163 RRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYS--IKGKTKHRLWLELCDL 220
R + P ++ L + ++ E E+L +V Q + + + WL C +
Sbjct: 136 DRSVTLLPR-----VDQLWEKYIYME--EKLGNVTGARQIFERWMNWSPDQKAWL--CFI 186
Query: 221 LTTHATEISGLNVDAIIRGGIRKFT---DEVGRLWTSLADYYIRRELFEK-ARDIFEEGM 276
E+ ++ R +F +V + A + ++R K AR+++E +
Sbjct: 187 ----KFELRYNEIERA-RSIYERFVLCHPKVSA-FIRYAKFEMKRGGQVKLAREVYERAV 240
Query: 277 MTVVTVRDFSVIFDSYSQFEE 297
+ + ++F S+++FEE
Sbjct: 241 DKLANDEEAEILFVSFAEFEE 261
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 250 RLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS 301
++W A+Y IR+ AR I + V+ IF Y + E +V+
Sbjct: 411 KIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVK----IFKKYIEMELKLVN 458
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 230 (86.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 81/308 (26%), Positives = 149/308 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 288
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ VA + + M+ + W Y++ E +
Sbjct: 289 RAITTLPRVNQFWYKYTYMEEMLGNVAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 347
Query: 532 ESTRAVYERILDLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IW 588
+ R +YER + + P + I YA E+H YF A +VYER V+ F H+ + ++
Sbjct: 348 DRARTIYERFV---LVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLY 404
Query: 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------L 639
V + +KF + + + ER R +++ A++ + L+ Y E+ +G +
Sbjct: 405 VAF-AKFEEN--QKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIV 461
Query: 640 AKRAMKVYDQATKAVP-NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698
+KR + Y++ KA P N++ Y + AE V RE+YE+AI + +P K
Sbjct: 462 SKRRFQ-YEEEVKANPHNYDAWFDYLRLVESDAEAEAV---REVYERAI-ANVPPIQEKR 516
Query: 699 MCLKYAEL 706
+Y L
Sbjct: 517 HWKRYIYL 524
Score = 195 (73.7 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 112/482 (23%), Positives = 202/482 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEA--VRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANA 442
+ WH + FE L Y E RT+ + P W+ +A+ E + A+A
Sbjct: 332 QAWHSYIN-FE-------LRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHA 383
Query: 443 RVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501
R ++++AV+ + +H+ ++ +A+ E K F+ + + A S + + +
Sbjct: 384 RKVYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFK 441
Query: 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561
N + K R +E+ + + R YE + +Y L+E
Sbjct: 442 --NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKANPHNYDAWFDYLRLVES 491
Query: 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKL---ERARELFENAVE 616
E VYER + K W Y+ ++ Y + + ER R++++ ++E
Sbjct: 492 DAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLE 551
Query: 617 TAPAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
P +++ YA+ E ++ LA+RA+ K N KL +++YI
Sbjct: 552 LIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGT--SIGKCPKN--KL--FKVYIELEL 605
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
++ + R++YE+ +E G P+ +K+AELE LG+IDRAR IY A + PR
Sbjct: 606 QLREFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIDRARAIYELA--ISQPRL 660
Query: 732 DTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHFILP---EYLMQKDQ 782
D W + +FE+ E T +R +L+ + V S F L E + K +
Sbjct: 661 DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCR 720
Query: 783 RLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVES----QTD 838
++ ++A ++ E+ + LE + G A D R + V+ QTD
Sbjct: 721 QI-YEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTD 779
Query: 839 GG 840
G
Sbjct: 780 DG 781
Score = 175 (66.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 56/243 (23%), Positives = 108/243 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 233 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 292
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 293 TL--PRVNQFWYKY-TYMEEMLGN--VAGARQVFERWMEWQPEEQAWHSYINF---ELRY 344
Query: 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697
RA +Y++ P+ + Y + + A F R++YE+A+E + +
Sbjct: 345 KEVDRARTIYERFVLVHPDVKNWIKYARFEEKHA-YFA--HARKVYERAVEFFGDEHMDE 401
Query: 698 AMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
+ + +A+ E++ E +R R IY +A + E + + FE G+ +++
Sbjct: 402 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIV 461
Query: 758 IKR 760
KR
Sbjct: 462 SKR 464
Score = 167 (63.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 60/240 (25%), Positives = 108/240 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+ W Y +EE LGN+ R V+ER ++ + Q +Y +K + A +YER
Sbjct: 299 QFWYKYTYMEEMLGNVAGARQVFERWMEWQ-PEEQAWHSYINFELRYKEVDRARTIYERF 357
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLE 634
V + +P VK+ W+ Y ++F +++ AR+++E AVE + + + LY+ +AK E
Sbjct: 358 VLV--HPDVKN-WIKY-ARFEEKHAY--FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 411
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA--------RAAEIFGVPKTREIYEQA 686
E+ +R +Y A + + +++ Y R E V K R YE+
Sbjct: 412 ENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 471
Query: 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746
+++ + D Y L +S E + R +Y A P + W R+ +N+
Sbjct: 472 VKANPHNYDA---WFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINY 528
Score = 128 (50.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 56/266 (21%), Positives = 112/266 (42%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ T+ + W ++ ME N GA ++
Sbjct: 265 TLWLKYAEMEMKNRQVNHARNIWDRAIT----TLPRVNQFWYKYTYMEEMLGNVAGARQV 320
Query: 484 MRRATA-EP---------SVEVRRRVAADGNEPVQMK---LHKSLRLWTFYVDLEESLGN 530
R +P + E+R + D + + +H ++ W Y EE
Sbjct: 321 FERWMEWQPEEQAWHSYINFELRYK-EVDRARTIYERFVLVHPDVKNWIKYARFEEKHAY 379
Query: 531 LESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587
R VYER ++ + + +A E K FE +Y+ + +++
Sbjct: 380 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQEL 439
Query: 588 WVTYLSKFVKRYGKTK------LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641
+ Y + F K++G + + + R +E V+ P + + Y +L E A+
Sbjct: 440 FKNY-TIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAEAE 496
Query: 642 RAMKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A VP ++ ++ YI
Sbjct: 497 AVREVYERAIANVPPIQEKRHWKRYI 522
Score = 125 (49.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 55/223 (24%), Positives = 99/223 (44%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 472 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYA-L 530
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L L RRA
Sbjct: 531 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKN----LSLARRALG 585
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P K+ +L+ Y++LE L + R +YE+ L+
Sbjct: 586 T-SI---------GKCP------KN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENC 628
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L + A +YE + + + +W +Y+
Sbjct: 629 TSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYI 671
Score = 122 (48.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 245 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 302
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 303 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 357
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 358 VLVHPDVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 412
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + +D +F +Y+ FE+
Sbjct: 413 NQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK 448
Score = 97 (39.2 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 32/134 (23%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 252 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 303
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 304 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 357
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 358 VLVHPD-VKNWIKY 370
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 263 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 315
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 316 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 366
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 367 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 420
Score = 51 (23.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 218 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 257
Score = 42 (19.8 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 384 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 432
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 230 (86.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 81/308 (26%), Positives = 149/308 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 300
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ VA + + M+ + W Y++ E +
Sbjct: 301 RAITTLPRVNQFWYKYTYMEEMLGNVAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 359
Query: 532 ESTRAVYERILDLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IW 588
+ R +YER + + P + I YA E+H YF A +VYER V+ F H+ + ++
Sbjct: 360 DRARTIYERFV---LVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLY 416
Query: 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------L 639
V + +KF + + + ER R +++ A++ + L+ Y E+ +G +
Sbjct: 417 VAF-AKFEEN--QKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIV 473
Query: 640 AKRAMKVYDQATKAVP-NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698
+KR + Y++ KA P N++ Y + AE V RE+YE+AI + +P K
Sbjct: 474 SKRRFQ-YEEEVKANPHNYDAWFDYLRLVESDAEAEAV---REVYERAI-ANVPPIQEKR 528
Query: 699 MCLKYAEL 706
+Y L
Sbjct: 529 HWKRYIYL 536
Score = 195 (73.7 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 112/482 (23%), Positives = 202/482 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEA--VRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANA 442
+ WH + FE L Y E RT+ + P W+ +A+ E + A+A
Sbjct: 344 QAWHSYIN-FE-------LRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHA 395
Query: 443 RVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501
R ++++AV+ + +H+ ++ +A+ E K F+ + + A S + + +
Sbjct: 396 RKVYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFK 453
Query: 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561
N + K R +E+ + + R YE + +Y L+E
Sbjct: 454 --NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKANPHNYDAWFDYLRLVES 503
Query: 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKL---ERARELFENAVE 616
E VYER + K W Y+ ++ Y + + ER R++++ ++E
Sbjct: 504 DAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLE 563
Query: 617 TAPAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
P +++ YA+ E ++ LA+RA+ K N KL +++YI
Sbjct: 564 LIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGT--SIGKCPKN--KL--FKVYIELEL 617
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
++ + R++YE+ +E G P+ +K+AELE LG+IDRAR IY A + PR
Sbjct: 618 QLREFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIDRARAIYELA--ISQPRL 672
Query: 732 DTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHFILP---EYLMQKDQ 782
D W + +FE+ E T +R +L+ + V S F L E + K +
Sbjct: 673 DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCR 732
Query: 783 RLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVES----QTD 838
++ ++A ++ E+ + LE + G A D R + V+ QTD
Sbjct: 733 QI-YEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTD 791
Query: 839 GG 840
G
Sbjct: 792 DG 793
Score = 175 (66.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 56/243 (23%), Positives = 108/243 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 304
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 305 TL--PRVNQFWYKY-TYMEEMLGN--VAGARQVFERWMEWQPEEQAWHSYINF---ELRY 356
Query: 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697
RA +Y++ P+ + Y + + A F R++YE+A+E + +
Sbjct: 357 KEVDRARTIYERFVLVHPDVKNWIKYARFEEKHA-YFA--HARKVYERAVEFFGDEHMDE 413
Query: 698 AMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
+ + +A+ E++ E +R R IY +A + E + + FE G+ +++
Sbjct: 414 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIV 473
Query: 758 IKR 760
KR
Sbjct: 474 SKR 476
Score = 167 (63.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 60/240 (25%), Positives = 108/240 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+ W Y +EE LGN+ R V+ER ++ + Q +Y +K + A +YER
Sbjct: 311 QFWYKYTYMEEMLGNVAGARQVFERWMEWQ-PEEQAWHSYINFELRYKEVDRARTIYERF 369
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLE 634
V + +P VK+ W+ Y ++F +++ AR+++E AVE + + + LY+ +AK E
Sbjct: 370 VLV--HPDVKN-WIKY-ARFEEKHAY--FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 423
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA--------RAAEIFGVPKTREIYEQA 686
E+ +R +Y A + + +++ Y R E V K R YE+
Sbjct: 424 ENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 483
Query: 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746
+++ + D Y L +S E + R +Y A P + W R+ +N+
Sbjct: 484 VKANPHNYDA---WFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINY 540
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 56/266 (21%), Positives = 112/266 (42%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ T+ + W ++ ME N GA ++
Sbjct: 277 TLWLKYAEMEMKNRQVNHARNIWDRAIT----TLPRVNQFWYKYTYMEEMLGNVAGARQV 332
Query: 484 MRRATA-EP---------SVEVRRRVAADGNEPVQMK---LHKSLRLWTFYVDLEESLGN 530
R +P + E+R + D + + +H ++ W Y EE
Sbjct: 333 FERWMEWQPEEQAWHSYINFELRYK-EVDRARTIYERFVLVHPDVKNWIKYARFEEKHAY 391
Query: 531 LESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587
R VYER ++ + + +A E K FE +Y+ + +++
Sbjct: 392 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQEL 451
Query: 588 WVTYLSKFVKRYGKTK------LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641
+ Y + F K++G + + + R +E V+ P + + Y +L E A+
Sbjct: 452 FKNY-TIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAEAE 508
Query: 642 RAMKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A VP ++ ++ YI
Sbjct: 509 AVREVYERAIANVPPIQEKRHWKRYI 534
Score = 125 (49.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 55/223 (24%), Positives = 99/223 (44%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 484 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYA-L 542
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L L RRA
Sbjct: 543 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWILYAQFEIRQKN----LSLARRALG 597
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P K+ +L+ Y++LE L + R +YE+ L+
Sbjct: 598 T-SI---------GKCP------KN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENC 640
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L + A +YE + + + +W +Y+
Sbjct: 641 TSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYI 683
Score = 122 (48.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 257 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 314
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 315 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 369
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 370 VLVHPDVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 424
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + +D +F +Y+ FE+
Sbjct: 425 NQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK 460
Score = 97 (39.2 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 32/134 (23%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 264 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 315
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 316 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 369
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 370 VLVHPD-VKNWIKY 382
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 275 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 327
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 328 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 378
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 379 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 432
Score = 51 (23.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 230 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 269
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 396 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 444
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 234 (87.4 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 82/306 (26%), Positives = 148/306 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 139
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ VA + + M+ + W Y++ E +
Sbjct: 140 RAITTLPRVNQFWYKYTYMEEMLGNVAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 198
Query: 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWVT 590
E R +YER + + A I YA E+H YF A +VYER V+ F H+ + ++V
Sbjct: 199 ERARTIYERFVLVHPAVKNWI-KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA 257
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------LAK 641
+ +KF + + + ER R +++ A++ + L+ Y E+ +G ++K
Sbjct: 258 F-AKFEEN--QKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSK 314
Query: 642 RAMKVYDQATKAVP-NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMC 700
R + Y++ KA P N++ Y + AE V RE+YE+AI + +P K
Sbjct: 315 RRFQ-YEEEVKANPHNYDAWFDYLRLVESDAEADTV---REVYERAI-ANVPPIQEKRHW 369
Query: 701 LKYAEL 706
+Y L
Sbjct: 370 KRYIYL 375
Score = 177 (67.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 104/460 (22%), Positives = 194/460 (42%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANARV 444
+ WH + FE K++ E RT+ + P W+ +A+ E + A+AR
Sbjct: 183 QAWHSYIN-FELR-YKEV----ERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARK 236
Query: 445 IFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503
++++AV+ + +H+ ++ +A+ E K F+ + + A S + + +
Sbjct: 237 VYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFK-- 292
Query: 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK 563
N + K R +E+ + + R YE + +Y L+E
Sbjct: 293 NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 344
Query: 564 YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKL---ERARELFENAVETA 618
+ VYER + K W Y+ +V Y + + ER R++++ ++E
Sbjct: 345 EADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELI 404
Query: 619 PAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI 673
P ++L YA+ E ++ A+RA+ K N KL ++ YI ++
Sbjct: 405 PHKKFTFAKMWLYYAQFEIRQKNLPFARRALGT--SIGKCPKN--KL--FKGYIELELQL 458
Query: 674 FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733
+ R++YE+ +E G P+ +K+AELE LG+I+RAR IY A + PR D
Sbjct: 459 REFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIERARAIYELA--ISQPRLDM 513
Query: 734 E--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHFILP---EYLMQKDQRL 784
W + +FE+ E T +R++L+ + V S F L E + K +++
Sbjct: 514 PEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQI 573
Query: 785 SIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSR 824
++A ++ E+ + LE + G D R
Sbjct: 574 -YEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKER 612
Score = 177 (67.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 64/240 (26%), Positives = 108/240 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+ W Y +EE LGN+ R V+ER ++ + Q +Y +K E A +YER
Sbjct: 150 QFWYKYTYMEEMLGNVAGARQVFERWMEWQ-PEEQAWHSYINFELRYKEVERARTIYERF 208
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLE 634
V + +P VK+ W+ Y ++F +++ AR+++E AVE + + + LY+ +AK E
Sbjct: 209 VLV--HPAVKN-WIKY-ARFEEKHAY--FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 262
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA--------RAAEIFGVPKTREIYEQA 686
E+ +R +Y A + E +++ Y R E V K R YE+
Sbjct: 263 ENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 322
Query: 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746
+++ + D Y L +S E D R +Y A P + W R+ VN+
Sbjct: 323 VKANPHNYDA---WFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNY 379
Score = 175 (66.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 59/246 (23%), Positives = 109/246 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 143
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 144 TL--PRVNQFWYKY-TYMEEMLGN--VAGARQVFERWMEWQPEEQAWHSYINF---ELRY 195
Query: 638 GLAKRAMKVYDQAT---KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694
+RA +Y++ AV N K +E A A R++YE+A+E +
Sbjct: 196 KEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAH------ARKVYERAVEFFGDEH 249
Query: 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFRE 754
+ + + +A+ E++ E +R R IY +A + E + + FE G+ +
Sbjct: 250 MDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIED 309
Query: 755 MLRIKR 760
++ KR
Sbjct: 310 IIVSKR 315
Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 55/265 (20%), Positives = 111/265 (41%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ T+ + W ++ ME N GA ++
Sbjct: 116 TLWLKYAEMEMKNRQVNHARNIWDRAIT----TLPRVNQFWYKYTYMEEMLGNVAGARQV 171
Query: 484 MRRATA-EP---------SVEVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
R +P + E+R + + + +H +++ W Y EE
Sbjct: 172 FERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYF 231
Query: 532 ESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
R VYER ++ + + +A E K FE +Y+ + ++++
Sbjct: 232 AHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELF 291
Query: 589 VTYLSKFVKRYGKTK------LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR 642
Y + F K++G + + + R +E V+ P + + Y +L E A
Sbjct: 292 KNY-TIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAEADT 348
Query: 643 AMKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A VP ++ ++ YI
Sbjct: 349 VREVYERAIANVPPIQEKRHWKRYI 373
Score = 124 (48.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 57/223 (25%), Positives = 96/223 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + Y A+ V P+ K K + LWV +A L
Sbjct: 323 VKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 381
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 382 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKN----LPFARRALG 436
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 437 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLEFGPENC 479
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L E A +YE + + + +W +Y+
Sbjct: 480 TSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 522
Score = 121 (47.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 96 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 153
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + ER ++ ++F
Sbjct: 154 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVERARTIY--ERF 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 209 VLVHPAVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 264 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 299
Score = 101 (40.6 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 33/134 (24%), Positives = 64/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 103 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 154
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E +E + +Y R+
Sbjct: 155 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVERARTIYERF 208
Query: 166 LKYDPSHIEDFIEF 179
+ P+ ++++I++
Sbjct: 209 VLVHPA-VKNWIKY 221
Score = 76 (31.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 114 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 166
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 167 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--- 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 218 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 271
Score = 51 (23.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 234 (87.4 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 82/306 (26%), Positives = 148/306 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 139
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ VA + + M+ + W Y++ E +
Sbjct: 140 RAITTLPRVNQFWYKYTYMEEMLGNVAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 198
Query: 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWVT 590
E R +YER + + A I YA E+H YF A +VYER V+ F H+ + ++V
Sbjct: 199 ERARTIYERFVLVHPAVKNWI-KYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA 257
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------LAK 641
+ +KF + + + ER R +++ A++ + L+ Y E+ +G ++K
Sbjct: 258 F-AKFEEN--QKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSK 314
Query: 642 RAMKVYDQATKAVP-NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMC 700
R + Y++ KA P N++ Y + AE V RE+YE+AI + +P K
Sbjct: 315 RRFQ-YEEEVKANPHNYDAWFDYLRLVESDAEADTV---REVYERAI-ANVPPIQEKRHW 369
Query: 701 LKYAEL 706
+Y L
Sbjct: 370 KRYIYL 375
Score = 177 (67.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 104/460 (22%), Positives = 194/460 (42%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANARV 444
+ WH + FE K++ E RT+ + P W+ +A+ E + A+AR
Sbjct: 183 QAWHSYIN-FELR-YKEV----ERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARK 236
Query: 445 IFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503
++++AV+ + +H+ ++ +A+ E K F+ + + A S + + +
Sbjct: 237 VYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFK-- 292
Query: 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK 563
N + K R +E+ + + R YE + +Y L+E
Sbjct: 293 NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 344
Query: 564 YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKL---ERARELFENAVETA 618
+ VYER + K W Y+ +V Y + + ER R++++ ++E
Sbjct: 345 EADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELI 404
Query: 619 PAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI 673
P ++L YA+ E ++ A+RA+ K N KL ++ YI ++
Sbjct: 405 PHKKFTFAKMWLYYAQFEIRQKNLPFARRALGT--SIGKCPKN--KL--FKGYIELELQL 458
Query: 674 FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733
+ R++YE+ +E G P+ +K+AELE LG+I+RAR IY A + PR D
Sbjct: 459 REFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIERARAIYELA--ISQPRLDM 513
Query: 734 E--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHFILP---EYLMQKDQRL 784
W + +FE+ E T +R++L+ + V S F L E + K +++
Sbjct: 514 PEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCRQI 573
Query: 785 SIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSR 824
++A ++ E+ + LE + G D R
Sbjct: 574 -YEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKER 612
Score = 177 (67.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 64/240 (26%), Positives = 108/240 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+ W Y +EE LGN+ R V+ER ++ + Q +Y +K E A +YER
Sbjct: 150 QFWYKYTYMEEMLGNVAGARQVFERWMEWQ-PEEQAWHSYINFELRYKEVERARTIYERF 208
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLE 634
V + +P VK+ W+ Y ++F +++ AR+++E AVE + + + LY+ +AK E
Sbjct: 209 VLV--HPAVKN-WIKY-ARFEEKHAY--FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 262
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA--------RAAEIFGVPKTREIYEQA 686
E+ +R +Y A + E +++ Y R E V K R YE+
Sbjct: 263 ENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 322
Query: 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746
+++ + D Y L +S E D R +Y A P + W R+ VN+
Sbjct: 323 VKANPHNYDA---WFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNY 379
Score = 175 (66.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 59/246 (23%), Positives = 109/246 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 84 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 143
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 144 TL--PRVNQFWYKY-TYMEEMLGN--VAGARQVFERWMEWQPEEQAWHSYINF---ELRY 195
Query: 638 GLAKRAMKVYDQAT---KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694
+RA +Y++ AV N K +E A A R++YE+A+E +
Sbjct: 196 KEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAH------ARKVYERAVEFFGDEH 249
Query: 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFRE 754
+ + + +A+ E++ E +R R IY +A + E + + FE G+ +
Sbjct: 250 MDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIED 309
Query: 755 MLRIKR 760
++ KR
Sbjct: 310 IIVSKR 315
Score = 128 (50.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 55/265 (20%), Positives = 111/265 (41%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ T+ + W ++ ME N GA ++
Sbjct: 116 TLWLKYAEMEMKNRQVNHARNIWDRAIT----TLPRVNQFWYKYTYMEEMLGNVAGARQV 171
Query: 484 MRRATA-EP---------SVEVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
R +P + E+R + + + +H +++ W Y EE
Sbjct: 172 FERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYF 231
Query: 532 ESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
R VYER ++ + + +A E K FE +Y+ + ++++
Sbjct: 232 AHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELF 291
Query: 589 VTYLSKFVKRYGKTK------LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR 642
Y + F K++G + + + R +E V+ P + + Y +L E A
Sbjct: 292 KNY-TIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAEADT 348
Query: 643 AMKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A VP ++ ++ YI
Sbjct: 349 VREVYERAIANVPPIQEKRHWKRYI 373
Score = 124 (48.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 57/223 (25%), Positives = 96/223 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + Y A+ V P+ K K + LWV +A L
Sbjct: 323 VKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 381
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 382 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLYYAQFEIRQKN----LPFARRALG 436
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 437 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLEFGPENC 479
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L E A +YE + + + +W +Y+
Sbjct: 480 TSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 522
Score = 121 (47.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 45/217 (20%), Positives = 96/217 (44%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 96 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 153
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G + + +V+ R++++ P E + +L + ER ++ ++F
Sbjct: 154 KYTYMEEMLG-NVAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVERARTIY--ERF 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ HA V + F DE L+ + A +
Sbjct: 209 VLVHPAVKN--WIKYARFEEKHAYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 264 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 299
Score = 101 (40.6 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 33/134 (24%), Positives = 64/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 103 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 154
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + + AR+ F+R + P ++ W Y+ F E +E + +Y R+
Sbjct: 155 YTYMEEMLGN--VAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVERARTIYERF 208
Query: 166 LKYDPSHIEDFIEF 179
+ P+ ++++I++
Sbjct: 209 VLVHPA-VKNWIKY 221
Score = 76 (31.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 39/176 (22%), Positives = 75/176 (42%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 114 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNVA-- 166
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 167 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN--- 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 218 WIKYARFEEKHAY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 271
Score = 51 (23.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 69 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 228 (85.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 80/308 (25%), Positives = 150/308 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 125 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 180
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ +A + + M+ + W Y++ E +
Sbjct: 181 RAITTLPRVNQFWYKYTYMEEMLGNIAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 239
Query: 532 ESTRAVYERILDLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IW 588
+ R +YER + + P + I YA E+H YF A +VYER V+ F H+ + ++
Sbjct: 240 DRARTIYERFV---LVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLY 296
Query: 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------L 639
V + +KF + + + ER R +++ A++ + L+ Y E+ +G +
Sbjct: 297 VAF-AKFEEN--QKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIV 353
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKT-REIYEQAIESGLPDKDVKA 698
+KR + Y++ KA P H ++ Y+ R E +T RE+YE+AI + +P K
Sbjct: 354 SKRRFQ-YEEEVKANP-HNYDAWFD-YL-RLVESDAEAETVREVYERAI-ANVPPIQEKR 408
Query: 699 MCLKYAEL 706
+Y L
Sbjct: 409 HWKRYIYL 416
Score = 179 (68.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 58/244 (23%), Positives = 108/244 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 125 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 184
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 185 TL--PRVNQFWYKY-TYMEEMLGN--IAGARQVFERWMEWQPEEQAWHSYINF---ELRY 236
Query: 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPDKDV 696
RA +Y++ P+ + Y AR E G R++YE+A+E +
Sbjct: 237 KEVDRARTIYERFVLVHPDVKNWIKY----ARFEEKHGYFAHARKVYERAVEFFGDEHMD 292
Query: 697 KAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756
+ + + +A+ E++ E +R R IY +A + E + + FE G+ +++
Sbjct: 293 EHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDII 352
Query: 757 RIKR 760
KR
Sbjct: 353 VSKR 356
Score = 178 (67.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 63/240 (26%), Positives = 109/240 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+ W Y +EE LGN+ R V+ER ++ + Q +Y +K + A +YER
Sbjct: 191 QFWYKYTYMEEMLGNIAGARQVFERWMEWQ-PEEQAWHSYINFELRYKEVDRARTIYERF 249
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLE 634
V + +P VK+ W+ Y ++F +++G AR+++E AVE + + + LY+ +AK E
Sbjct: 250 VLV--HPDVKN-WIKY-ARFEEKHGY--FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 303
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA--------RAAEIFGVPKTREIYEQA 686
E+ +R +Y A + E +++ Y R E V K R YE+
Sbjct: 304 ENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 363
Query: 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746
+++ + D Y L +S E + R +Y A P + W R+ VN+
Sbjct: 364 VKANPHNYDA---WFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNY 420
Score = 176 (67.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 106/462 (22%), Positives = 192/462 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEA--VRTVDPMKAVGKPHTL-WVAFAKLYETYKDIANA 442
+ WH + FE L Y E RT+ + P W+ +A+ E + A+A
Sbjct: 224 QAWHSYIN-FE-------LRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHGYFAHA 275
Query: 443 RVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501
R ++++AV+ + +H+ ++ +A+ E K F+ + + A S + + +
Sbjct: 276 RKVYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFK 333
Query: 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561
N + K R +E+ + + R YE + +Y L+E
Sbjct: 334 --NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKANPHNYDAWFDYLRLVES 383
Query: 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKTKL---ERARELFENAVE 616
E VYER + K W Y+ +V Y + + ER R++++ ++E
Sbjct: 384 DAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLE 443
Query: 617 TAPAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
P ++L YA+ E ++ A+RA+ K N KL ++ YI
Sbjct: 444 LIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGT--SIGKCPKN--KL--FKGYIELEL 497
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
++ + R++YE+ +E G P+ +K+AELE LG+I+RAR IY A + PR
Sbjct: 498 QLREFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIERARAIYELA--ISQPRL 552
Query: 732 DTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHFILP---EYLMQKDQ 782
D W + +FE+ E T +R +L+ + V S F L E + K +
Sbjct: 553 DMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSRKEGSLAKCR 612
Query: 783 RLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSR 824
++ ++A ++ E+ + LE + G D R
Sbjct: 613 QI-YEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKER 653
Score = 136 (52.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 57/266 (21%), Positives = 113/266 (42%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ T+ + W ++ ME N GA ++
Sbjct: 157 TLWLKYAEMEMKNRQVNHARNIWDRAIT----TLPRVNQFWYKYTYMEEMLGNIAGARQV 212
Query: 484 MRRATA-EP---------SVEVRRRVAADGNEPVQMK---LHKSLRLWTFYVDLEESLGN 530
R +P + E+R + D + + +H ++ W Y EE G
Sbjct: 213 FERWMEWQPEEQAWHSYINFELRYK-EVDRARTIYERFVLVHPDVKNWIKYARFEEKHGY 271
Query: 531 LESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587
R VYER ++ + + +A E K FE +Y+ + +++
Sbjct: 272 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL 331
Query: 588 WVTYLSKFVKRYGKTK------LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641
+ Y + F K++G + + + R +E V+ P + + Y +L E A+
Sbjct: 332 FKNY-TIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNY--DAWFDYLRLVESDAEAE 388
Query: 642 RAMKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A VP ++ ++ YI
Sbjct: 389 TVREVYERAIANVPPIQEKRHWKRYI 414
Score = 125 (49.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 57/223 (25%), Positives = 97/223 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LWV +A L
Sbjct: 364 VKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYA-L 422
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 423 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKN----LPFARRALG 477
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 478 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLEFGPENC 520
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L E A +YE + + + +W +Y+
Sbjct: 521 TSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 563
Score = 115 (45.5 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 44/217 (20%), Positives = 95/217 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 137 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 194
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I + +V+ R++++ P E + +L + +R ++ ++F
Sbjct: 195 KYTYMEEMLG-NIAGARQVFERWMEWQPE--EQAWHSYINFELRYKEVDRARTIY--ERF 249
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ H V + F DE L+ + A +
Sbjct: 250 VLVHPDVKN--WIKYARFEEKHGYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFEE 304
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 305 NQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 340
Score = 98 (39.6 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 33/134 (24%), Positives = 63/134 (47%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 144 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 195
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I AR+ F+R + P ++ W Y+ F E ++ + +Y R+
Sbjct: 196 YTYMEEMLGN--IAGARQVFERWMEWQP---EEQAWHSYINF-ELRYKEVDRARTIYERF 249
Query: 166 LKYDPSHIEDFIEF 179
+ P ++++I++
Sbjct: 250 VLVHPD-VKNWIKY 262
Score = 80 (33.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 40/176 (22%), Positives = 76/176 (43%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 155 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNIA-- 207
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR ++R + P ++
Sbjct: 208 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN--- 258
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ G + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 259 WIKYARFEEKHGY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 312
Score = 51 (23.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 110 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 149
Score = 42 (19.8 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 276 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 324
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 218 (81.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 76/306 (24%), Positives = 147/306 (48%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 168 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 223
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ +A + + M+ + W Y++ E +
Sbjct: 224 RAITTLPRVNQFWYKYTYMEEMLGNIAG-ARQVFERWMEWRPEEQAWHSYINFELRYKEV 282
Query: 532 ESTRAVYERIL-DLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-I 587
+ R +YER + L + P + I YA E+H YF A +VYER V+ F H+ + +
Sbjct: 283 DRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHL 342
Query: 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY 647
+V + +KF + + + ER R +++ A++ + L+ Y E+ +G +R ++
Sbjct: 343 YVAF-AKFEEN--QKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG-DRRGIEDI 398
Query: 648 DQATKAVPNHEKLGM----YEIYI--ARAAEIFGVPKT-REIYEQAIESGLPDKDVKAMC 700
+ + E++ Y+ + R E +T RE+YE+AI + +P K
Sbjct: 399 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAI-ANVPPVQEKRHW 457
Query: 701 LKYAEL 706
+Y L
Sbjct: 458 KRYIYL 463
Score = 178 (67.7 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 59/245 (24%), Positives = 110/245 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 168 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 227
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 228 TL--PRVNQFWYKY-TYMEEMLGN--IAGARQVFERWMEWRPEEQAWHSYINF---ELRY 279
Query: 638 GLAKRAMKVYDQATKA-VPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPDKD 695
RA +Y++ + V H + + Y AR E G R++YE+A+E +
Sbjct: 280 KEVDRARTIYERYIHSLVLVHPDVKNWIKY-ARFEEKHGYFAHARKVYERAVEFFGDEHM 338
Query: 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
+ + + +A+ E++ E +R R IY +A + E + + FE G+ ++
Sbjct: 339 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 398
Query: 756 LRIKR 760
+ KR
Sbjct: 399 IVSKR 403
Score = 176 (67.0 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 96/419 (22%), Positives = 178/419 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELM 484
W+ +A+ E + A+AR ++++AV+ + +H+ ++ +A+ E K F+ +
Sbjct: 306 WIKYARFEEKHGYFAHARKVYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIY 363
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
+ A S + + + N + K R +E+ + + R YE +
Sbjct: 364 KYALDRISKQEAQELFK--NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKA 413
Query: 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKT 602
+Y L+E E VYER + K W Y+ ++ Y +
Sbjct: 414 NPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEEL 473
Query: 603 KL---ERARELFENAVETAPAD--AVKPLYLQYAKLE---EDYGLAKRAMKVYDQATKAV 654
+ ER R++++ ++E P ++L YA+ E ++ A+RA+ K
Sbjct: 474 EAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGT--SIGKCP 531
Query: 655 PNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEID 714
N KL ++ YI ++ + R++YE+ +E G P+ +K+AELE LG+I+
Sbjct: 532 KN--KL--FKGYIELELQLREFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIE 584
Query: 715 RARGIYVFASQFADPRSDTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQ 768
RAR IY A + PR D W + +FE+ E T +R +L+ + V S
Sbjct: 585 RARAIYELA--ISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 642
Query: 769 THFILP---EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSR 824
F L E + K +++ ++A ++ E+ + LE G A D R
Sbjct: 643 AQFELSSGKEGSLAKCRQI-YEEANKTMRNCEEKEERLMLLESWRNFEDEFGTASDKER 700
Score = 153 (58.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 91/352 (25%), Positives = 147/352 (41%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
L+VAFAK E K+ RVI+ A+ +++ + L + + K F
Sbjct: 342 LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKNYTIFEKKFGD---- 391
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
RR E + +RR + E V+ H + W Y+ L ES E+ R VYER +
Sbjct: 392 -RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDAEAETVREVYERAI- 445
Query: 544 LRIATPQ----------IIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVK----DIW 588
+ Q + INYAL E E K E +VY+ +++ PH K +W
Sbjct: 446 ANVPPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELI--PHKKFTFAKMW 503
Query: 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648
+ Y ++F R + L AR ++ P + L+ Y +LE R K+Y+
Sbjct: 504 LLY-AQFEIR--QKNLPFARRALGTSIGKCPKNK---LFKGYIELELQLREFDRCRKLYE 557
Query: 649 QATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLK-YAEL 706
+ + P E + I A I G + + R IYE AI P D+ + K Y +
Sbjct: 558 KFLEFGP--ENCTSW-IKFAELETILGDIERARAIYELAISQ--PRLDMPEVLWKSYIDF 612
Query: 707 EKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI 758
E E +R R +Y + + W + +FE++ G E + + +I
Sbjct: 613 EIEQEETERTRNLY---RRLLQRTQHVKVWISFAQFELSSGKEGSLAKCRQI 661
Score = 124 (48.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 56/223 (25%), Positives = 97/223 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
++ NPHN + W +++ E + + + Y A+ V P+ K K + LW+ +A L
Sbjct: 411 VKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYA-L 469
Query: 433 YETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489
YE KD R ++ +++ + +K A +W +A+ E+R KN L RRA
Sbjct: 470 YEELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQFEIRQKN----LPFARRALG 524
Query: 490 EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549
S+ G P + KL K Y++LE L + R +YE+ L+
Sbjct: 525 T-SI---------GKCP-KNKLFKG------YIELELQLREFDRCRKLYEKFLEFGPENC 567
Query: 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
I +A L E A +YE + + + +W +Y+
Sbjct: 568 TSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 610
Score = 104 (41.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 44/218 (20%), Positives = 94/218 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL ++ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 180 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWY 237
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I + +V+ R++++ P E + +L + +R A + +
Sbjct: 238 KYTYMEEMLG-NIAGARQVFERWMEWRPE--EQAWHSYINFELRYKEVDR-ARTIYERYI 293
Query: 203 YS-IKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYY 259
+S + + W++ H V + F DE L+ + A +
Sbjct: 294 HSLVLVHPDVKNWIKYARFEEKHGYFAHARKV---YERAVEFFGDEHMDEHLYVAFAKFE 350
Query: 260 IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ FE+ R I++ + + + ++ +F +Y+ FE+
Sbjct: 351 ENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK 387
Score = 95 (38.5 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 187 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 238
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I AR+ F+R + P ++ W Y+ F E ++ + +Y RY
Sbjct: 239 YTYMEEMLGN--IAGARQVFERWMEWRP---EEQAWHSYINF-ELRYKEVDRARTIYERY 292
Query: 166 L 166
+
Sbjct: 293 I 293
Score = 87 (35.7 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 41/177 (23%), Positives = 77/177 (43%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 198 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNIA-- 250
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD-R 139
FER + + W Y+ K + +AR ++R + +L + D +
Sbjct: 251 -----GARQVFERWM-EWRPEEQAWHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVK 304
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ G + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 305 NWIKYARFEEKHGY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 359
Score = 71 (30.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L DI AR I++ A+ + +D +W + + E+ + + L
Sbjct: 568 TSWIKFAELETILGDIERARAIYELAI--SQPRLDMPEVLWKSYIDFEIEQEETERTRNL 625
Query: 484 MRR 486
RR
Sbjct: 626 YRR 628
Score = 56 (24.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 45/219 (20%), Positives = 90/219 (41%)
Query: 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM- 662
+ERAR ++E A+ D + L+ Y E + +R +Y + + H K+ +
Sbjct: 583 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRT-QHVKVWIS 641
Query: 663 YEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVF 722
+ + + + + K R+IYE+A +K ++ C E E+ L ++ R F
Sbjct: 642 FAQFELSSGKEGSLAKCRQIYEEA------NKTMRN-C---EEKEERLMLLESWRN---F 688
Query: 723 ASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTH-FILPEYLMQKD 781
+F SD E ++ +V R ++ A + + + +I PE +
Sbjct: 689 EDEFGTA-SDKERVDKLMPEKVKK------RRKVQADDGSDAGWEEYYDYIFPEDAANQP 741
Query: 782 QRLSIDDAK-----DKLKQAGVHEDEMAALERQLAPAAN 815
+ AK + K+AG + + ER+ P+ +
Sbjct: 742 NLKLLAMAKLWKKQQQEKEAGEQDPDTDTAEREAGPSCS 780
Score = 51 (23.0 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 153 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 192
Score = 42 (19.8 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310
R+++E+A + F + M F+ ++ +FE + V K A +S
Sbjct: 323 RKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIS 371
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 218 (81.8 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 86/335 (25%), Positives = 149/335 (44%)
Query: 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA- 487
FA L E ++ R F+ V+ N +++ W +A EL K F+ A + RA
Sbjct: 44 FADLEELHEYQGRKRKEFEDYVRRNRINMNN----WMRYAAWELEQKEFRRARSIFERAL 99
Query: 488 ----TAEP------SVEVRRRVAADGNEPVQMK---LHKSLRLWTFYVDLEESLGNLEST 534
T+ P E+R R + L + +LW YV +EE+LGN+ T
Sbjct: 100 DVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGT 159
Query: 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594
R V+ER + Y L + + FE A +++R + +P ++ W+ + ++
Sbjct: 160 RQVFERWMSWE-PDEGAWSAYIKLEKRYNEFERARAIFQRFTIV--HPEPRN-WIKW-AR 214
Query: 595 FVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
F + YG + L RE++ AVET D + + L++ YA+ E +RA +Y A
Sbjct: 215 FEEEYGTSDL--VREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDR 272
Query: 654 VPNHEKLGMYEIYIARAAEIFG---------VPKTREIYEQAIESGLPDKDVKAMCLKYA 704
+P + + +++ Y + FG + K R YE+ ++ L + DV +A
Sbjct: 273 LPRSKSITLHKAYTTFEKQ-FGDREGVENVILAKRRVQYEEQLKENLRNYDV---WFDFA 328
Query: 705 ELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRW 739
LE+ G+ +R R +Y A P + W R+
Sbjct: 329 RLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRY 363
Score = 177 (67.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 77/307 (25%), Positives = 139/307 (45%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A K+ AR IF++A+ V+ +V +W + E E+R++N A L+
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERALDVDSTSVP----LWIRYIESEMRNRNINHARNLLD 130
Query: 486 RA-TAEPSVEVR--RRVAAD---GNEPVQMKLHKSLR-------LWTFYVDLEESLGNLE 532
RA T P V+ + V + GN P ++ + W+ Y+ LE+ E
Sbjct: 131 RAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFE 190
Query: 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWVTY 591
RA+++R + P+ I +A EE+ + VY V+ + + +++ Y
Sbjct: 191 RARAIFQRFTIVH-PEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAY 249
Query: 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------LAKR 642
++F + + ERAR +++ A++ P L+ Y E+ +G LAKR
Sbjct: 250 -ARFETKL--KEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKR 306
Query: 643 AMKVYDQATKAVPNHEKLGMYEIYI--ARAAEIFGVP-KTREIYEQAIESGLPDKDVKAM 699
++ Y++ K E L Y+++ AR E G P + R++YE+AI +P K
Sbjct: 307 RVQ-YEEQLK-----ENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQ-IPPSQEKRH 359
Query: 700 CLKYAEL 706
+Y L
Sbjct: 360 WRRYIYL 366
Score = 164 (62.8 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 78/297 (26%), Positives = 125/297 (42%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y E R+++ER LD+ + + I Y ++ A + +R V
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVT 134
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
I P V +W Y+ + G + R++FE + P + + Y KLE+ Y
Sbjct: 135 IL--PRVDKLWYKYVY-MEETLGN--IPGTRQVFERWMSWEPDEGA---WSAYIKLEKRY 186
Query: 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK-TREIYEQAIES-GLPDKD 695
+RA ++ + T P I AR E +G RE+Y A+E+ G D
Sbjct: 187 NEFERARAIFQRFTIVHPEPRNW----IKWARFEEEYGTSDLVREVYGLAVETLGEDFMD 242
Query: 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR-WHEFEVNHGNEDTFRE 754
K + + YA E L E +RAR IY +A PRS + ++ + FE G+ +
Sbjct: 243 EK-LFIAYARFETKLKEYERARAIYKYALDRL-PRSKSITLHKAYTTFEKQFGDREGVEN 300
Query: 755 MLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLA 811
++ KR V Y + L E L D + D A+ + +Q+G E ER +A
Sbjct: 301 VILAKRRVQ--YEEQ---LKENLRNYD--VWFDFARLE-EQSGDPERVRDVYERAIA 349
Score = 145 (56.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 85/389 (21%), Positives = 162/389 (41%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
W+ +A+ E Y R ++ AV+ + +D ++ +A E + K ++ A
Sbjct: 209 WIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDE--KLFIAYARFETKLKEYERA---- 262
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN--LESTRAVYERIL 542
RA + +++ R + + LHK+ + E + N L R YE L
Sbjct: 263 -RAIYKYALDRLPRSKS-------ITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQL 314
Query: 543 DLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV-----K 597
+ + ++A L E+ E VYER + K W Y+ ++ +
Sbjct: 315 KENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWE 374
Query: 598 RYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655
++RAR+++ ++ P ++L A+ E + A K QA P
Sbjct: 375 EMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCP 434
Query: 656 NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR 715
+KL + YI ++F + R +YE+ IE P ++YAELE+ L + +R
Sbjct: 435 K-DKL--FRGYIDLERQLFEFVRCRTLYEKQIEWN-PSNSQS--WIQYAELERGLDDTER 488
Query: 716 ARGIYVFASQFADPRSDTE--FWNRWHEFEVNHGNEDTFREMLR--IKRS----VSASYS 767
AR IY P D W + +FE + G + R++ ++++ V +Y+
Sbjct: 489 ARAIYELGID--QPTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQKTDHVKVWINYA 546
Query: 768 QTHFILP--EYLMQKDQRLSIDDAKDKLK 794
+ +P E ++++R D+AK + +
Sbjct: 547 RFEINVPDEEEEEEEEERPISDEAKRRAR 575
Score = 136 (52.9 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 55/221 (24%), Positives = 107/221 (48%)
Query: 83 EYETLNNTFERAL-VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
E+ + FERAL V +P +WI Y+E+ + I AR DRA+ LP + D++W
Sbjct: 87 EFRRARSIFERALDVDSTSVP-LWIRYIESEMRNRNINHARNLLDRAVTILP--RVDKLW 143
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y+ E G I + +V+ R++ ++P + ++ K + E ER ++ Q
Sbjct: 144 YKYVYMEETLG-NIPGTRQVFERWMSWEPDE-GAWSAYIKLEKRYNEF-ERARAIF---Q 197
Query: 202 FYSIKGKTKHRLWLELCDLLTTHAT-----EISGLNVDAIIRGGIRKFTDEVGRLWTSLA 256
++I + R W++ + T E+ GL V+ + G F DE +L+ + A
Sbjct: 198 RFTIV-HPEPRNWIKWARFEEEYGTSDLVREVYGLAVETL--G--EDFMDE--KLFIAYA 250
Query: 257 DYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ + + +E+AR I++ + + + + + +Y+ FE+
Sbjct: 251 RFETKLKEYERARAIYKYALDRLPRSKSIT-LHKAYTTFEK 290
Score = 128 (50.1 bits), Expect = 0.00021, P = 0.00021
Identities = 80/340 (23%), Positives = 139/340 (40%)
Query: 358 RLARLEHLMN----RRPELANSVLLRQNPHNVEQWHRRVKI-FEGNPTKQILTYTEAVRT 412
R A LE L +R E + V R+N N+ W R E ++ + E
Sbjct: 43 RFADLEELHEYQGRKRKEFEDYV--RRNRINMNNWMRYAAWELEQKEFRRARSIFERALD 100
Query: 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472
VD + P LW+ + + ++I +AR + D+AV + VD L W ++ ME
Sbjct: 101 VD---STSVP--LWIRYIESEMRNRNINHARNLLDRAVTI-LPRVDKL---WYKYVYMEE 151
Query: 473 RHKNFKGALELMRRATA-EPS-------VEVRRRVAA-DGNEPVQMK---LHKSLRLWTF 520
N G ++ R + EP +++ +R + + + +H R W
Sbjct: 152 TLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIK 211
Query: 521 YVDLEESLGNLESTRAVYERILDLRIAT-PQIIINYALLLEEHKYFEDAFRVYERGVKIF 579
+ EE G + R VY L + T + ++ L + + FE + YER I+
Sbjct: 212 WARFEEEYGTSDLVREVY----GLAVETLGEDFMDEKLFIA-YARFETKLKEYERARAIY 266
Query: 580 KY-----PHVKDI-----WVTYLSKFVKRYGKTK--LERARELFENAVETAPADAVKPLY 627
KY P K I + T+ +F R G L + R +E ++ + ++
Sbjct: 267 KYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNY--DVW 324
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667
+A+LEE G +R VY++A +P ++ + YI
Sbjct: 325 FDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYI 364
Score = 110 (43.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 38/150 (25%), Positives = 68/150 (45%)
Query: 22 RNPFSLKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
RN ++ W RY + E F++ I+ERAL S LW Y IE S ++N I
Sbjct: 67 RNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRY-IE--SEMRNRNIN 123
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
H N +RA+ + ++ ++W Y+ + I R+ F+R + P +
Sbjct: 124 HAR-----NLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEP---DEGA 175
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170
W Y++ +E+ E + +++R+ P
Sbjct: 176 WSAYIK-LEKRYNEFERARAIFQRFTIVHP 204
Score = 92 (37.4 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 81/361 (22%), Positives = 149/361 (41%)
Query: 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS--IWCEWAEMELRHKNFKGA 480
H + F K + + + N ++ + VQ + ++L + +W ++A +E + G
Sbjct: 282 HKAYTTFEKQFGDREGVENV-ILAKRRVQYEEQLKENLRNYDVWFDFARLEEQ----SGD 336
Query: 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLH--KSLRLWTFYVDLEE-SLGNLESTRAV 537
E +R +V R A P Q K H + + LW FY EE +++ R V
Sbjct: 337 PERVR--------DVYERAIAQ-IPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQV 387
Query: 538 YERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER--GVKIFKYPHVKDIWVTYLSKF 595
Y L L L+ + + + + + G I P K ++ Y+
Sbjct: 388 YTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDK-LFRGYID-- 444
Query: 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY----DQAT 651
++R + R R L+E +E P+++ ++QYA+LE +RA +Y DQ T
Sbjct: 445 LERQ-LFEFVRCRTLYEKQIEWNPSNSQS--WIQYAELERGLDDTERARAIYELGIDQPT 501
Query: 652 KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAI---------------ESGLPDKDV 696
+P +L +++ YI + + R++YE+ + E +PD++
Sbjct: 502 LDMP---EL-VWKAYIDFEDDEGEYERERQLYERLLQKTDHVKVWINYARFEINVPDEEE 557
Query: 697 KAMCLKYAELEKSLGEID--RARGIYVFASQ-FADPR---SDTEFWNRWHEFEVNHGN-E 749
+ E E+ + + RAR ++ A + F + E N W FE HG+ E
Sbjct: 558 EE-----EEEERPISDEAKRRARAVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPE 612
Query: 750 D 750
D
Sbjct: 613 D 613
Score = 79 (32.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 33/128 (25%), Positives = 52/128 (40%)
Query: 26 SLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY 84
S+ LW RY+ ++ R + +RA+ LP KLW+ Y+ ++ N+P T
Sbjct: 105 SVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETL-GNIPGTR--- 160
Query: 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIY 144
FER + + W Y++ +AR F R P R W +
Sbjct: 161 ----QVFERWM-SWEPDEGAWSAYIKLEKRYNEFERARAIFQRFTIVHP---EPRNWIKW 212
Query: 145 LRFVEQEG 152
RF E+ G
Sbjct: 213 ARFEEEYG 220
Score = 45 (20.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 252 WTSLADYYIRRELFEKARDIFEEGM 276
W A + + ++ F +AR IFE +
Sbjct: 75 WMRYAAWELEQKEFRRARSIFERAL 99
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 208 (78.3 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 74/309 (23%), Positives = 148/309 (47%)
Query: 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480
K +++ +A E+ KD+ AR +F++ + ++++ + ++W ++AEME+++KN A
Sbjct: 73 KTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHR----IPTVWIKYAEMEMKNKNINLA 128
Query: 481 LELMRRATAE-PSVE---VRRRVAAD--GNEPVQ-------MKLHKSLRLWTFYVDLEES 527
+ RA P V + D GN P M+ + W Y+ E+
Sbjct: 129 RNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQR 188
Query: 528 LGNLESTRAVYERILDLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIF-KYPHV 584
L E+TR ++E+ + + P I I Y E E+A +++R ++ + +
Sbjct: 189 LKLFENTRLIFEKYI---LVHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGND 245
Query: 585 KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644
+ +++ + +KF ++Y ++ERAR +++ A++ P K L+ + E+ +G + +
Sbjct: 246 EQLFIAF-AKFEEKY--KEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHG-DRIGI 301
Query: 645 KVYDQATKAVPNHEKLGM----YEIYI--ARAAEIFG-VPKTREIYEQAIESGLPDKDVK 697
+ K E++ Y+I+ + EI G + KTREIYE++I LP + K
Sbjct: 302 EDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSI-GNLPPTNEK 360
Query: 698 AMCLKYAEL 706
+Y L
Sbjct: 361 KHWKRYIYL 369
Score = 207 (77.9 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 83/361 (22%), Positives = 168/361 (46%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T+W+ +A++ K+I AR I+D+AV + + ++ +W ++ ME N+ A +
Sbjct: 110 TVWIKYAEMEMKNKNINLARNIWDRAVCL----LPRVSQLWFKYTFMEDMLGNYPAARAI 165
Query: 484 MRRATA---EPS-----VEVRRRVAADGNEPVQMK----LHKSLRLWTFYVDLEESLGNL 531
R EP ++ +R+ N + + +H ++ W Y EE LGN+
Sbjct: 166 FERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNI 225
Query: 532 ESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
E+ R +++R ++ Q+ I +A E++K E A +Y+ + KD++
Sbjct: 226 ENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLF 285
Query: 589 VTYLSKFVKRYG-KTKLERA---RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644
T+ + F K++G + +E ++ F+ E ++ Y K+EE G ++
Sbjct: 286 DTF-TNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTR 344
Query: 645 KVYDQATKAVP--NHEKLGMYEIYI----ARAAEIFG--VPKTREIYEQAIESGLPDKDV 696
++Y+++ +P N +K IY+ A E+ + + R +Y + I+ +P K+
Sbjct: 345 EIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKL-IPHKEF 403
Query: 697 K--AMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFRE 754
+ + YA E +D+AR IY A +P+S + ++++ E+ GN D R
Sbjct: 404 SFSKIWILYANFEIRQLNLDKARLIYGQAIG-RNPKS--KIFDQYIHLEIELGNFDRVRT 460
Query: 755 M 755
+
Sbjct: 461 L 461
Score = 185 (70.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 92/375 (24%), Positives = 165/375 (44%)
Query: 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA 418
RL+ N R +L+ +P+ ++ W + K E GN + T + R ++ +
Sbjct: 188 RLKLFENTRLIFEKYILV--HPY-IKTWIKYTKFEERLGN-IENARTIFQ--RAIEFLGE 241
Query: 419 VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478
G L++AFAK E YK+I ARVI+ A+ ++ ++ + E +H +
Sbjct: 242 DGNDEQLFIAFAKFEEKYKEIERARVIYKYAI--DHVPKSRAKDLFDTFTNFEKQHGD-- 297
Query: 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538
R E V ++R + E ++ K K+ +W Y+ +EE G +E TR +Y
Sbjct: 298 -------RIGIEDVVLGKKRFQYE--EEIK-KNSKNYDIWFDYLKMEEINGEIEKTREIY 347
Query: 539 ERILDLRIATPQ---------IIINYALLLEE-HKYFEDAFRVYERGVKIFKYPHVK--D 586
ER + T + + INYAL E K E A VY +K+ +
Sbjct: 348 ERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSK 407
Query: 587 IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646
IW+ Y + F R + L++AR ++ A+ P + + QY LE + G R +
Sbjct: 408 IWILY-ANFEIR--QLNLDKARLIYGQAIGRNPKSKI---FDQYIHLEIELGNFDRVRTL 461
Query: 647 YDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK-YAE 705
Y++ + +P++ + + E+ + R I+E AI+ P+ D + K + +
Sbjct: 462 YEKYLEIMPDN--CDAWCKFAQLETELGETVRARAIFELAIQQ--PNLDRPEVVWKDFID 517
Query: 706 LEKSLGEIDRARGIY 720
E L + D + +Y
Sbjct: 518 SEIQLKQFDFVKQLY 532
Score = 178 (67.7 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 57/238 (23%), Positives = 107/238 (44%)
Query: 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572
K+ ++ Y EES +L R+V+ER LD+ P + I YA + ++K A ++
Sbjct: 73 KTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIW 132
Query: 573 ERGVKIFKYPHVKDIWV--TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630
+R V + P V +W T++ + Y AR +FE ++ P + Y
Sbjct: 133 DRAVCLL--PRVSQLWFKYTFMEDMLGNY-----PAARAIFERWMQWKPEPQA---WNSY 182
Query: 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG 690
K E+ L + +++ K + H + + Y + + R I+++AIE
Sbjct: 183 LKFEQRLKLFENTRLIFE---KYILVHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFL 239
Query: 691 LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN 748
D + + + + +A+ E+ EI+RAR IY +A + ++ + FE HG+
Sbjct: 240 GEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
Score = 173 (66.0 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 78/341 (22%), Positives = 145/341 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ + K E +I NAR IF +A++ + + ++ +A+ E ++K + A + +
Sbjct: 212 WIKYTKFEERLGNIENARTIFQRAIEFLGEDGND-EQLFIAFAKFEEKYKEIERARVIYK 270
Query: 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545
A + + R + D + K H + +E+ + L R YE +
Sbjct: 271 YAI-DHVPKSRAKDLFDTFTNFE-KQHGDR------IGIEDVV--LGKKRFQYEEEIKKN 320
Query: 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG----- 600
I +Y + E + E +YER + + K W Y+ ++ Y
Sbjct: 321 SKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWIN-YALFEEL 379
Query: 601 -KTKLERARELFENAVETAPAD--AVKPLYLQYAKLE-EDYGLAKRAMKVYDQATKAVPN 656
+ERAR ++ ++ P + +++ YA E L K A +Y QA +
Sbjct: 380 ISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDK-ARLIYGQA---IGR 435
Query: 657 HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRA 716
+ K +++ YI E+ + R +YE+ +E +PD + A C K+A+LE LGE RA
Sbjct: 436 NPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEI-MPD-NCDAWC-KFAQLETELGETVRA 492
Query: 717 RGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
R I+ A Q + W + + E+ D +++ R
Sbjct: 493 RAIFELAIQQPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYR 533
Score = 128 (50.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 52/215 (24%), Positives = 101/215 (46%)
Query: 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFV 148
+ FER L H++P +WI Y E K I AR +DRA+C LP + ++W Y F+
Sbjct: 96 SVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLP--RVSQLWFKYT-FM 152
Query: 149 EQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIK 206
E + ++ R++++ +P +++F + KL++ RL +++ +
Sbjct: 153 EDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRLKLFENT--RLIF----EKYILVH 206
Query: 207 GKTKHRLWLELCDLLTTHATEISGL-NVDAIIRGGIRKFTDEVG---RLWTSLADYYIRR 262
K W++ T + + N I + I +F E G +L+ + A + +
Sbjct: 207 PYIK--TWIKY----TKFEERLGNIENARTIFQRAI-EFLGEDGNDEQLFIAFAKFEEKY 259
Query: 263 ELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+ E+AR I++ + V R +FD+++ FE+
Sbjct: 260 KEIERARVIYKYAIDHVPKSRAKD-LFDTFTNFEK 293
Score = 110 (43.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 64/282 (22%), Positives = 119/282 (42%)
Query: 504 NEPVQMKLHKSL---RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560
+E +++ HK ++W Y + E NL+ R +Y + + R +I Y L
Sbjct: 392 SECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIG-RNPKSKIFDQYIHLEI 450
Query: 561 EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620
E F+ +YE+ ++I P D W + ++ G+T RAR +FE A++
Sbjct: 451 ELGNFDRVRTLYEKYLEIM--PDNCDAWCKF-AQLETELGETV--RARAIFELAIQQPNL 505
Query: 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR 680
D + ++ + E ++Y + + NH K+ + I + + K R
Sbjct: 506 DRPEVVWKDFIDSEIQLKQFDFVKQLYRKLLEKT-NHVKVWIGFIKFVHSIKDKQQQKQR 564
Query: 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR-ARGIYVFASQFADPRSDTE----F 735
+ +Q E G D + K + + +I++ R I++ A + SD E
Sbjct: 565 Q--QQQEEDG--DSNTTK---KDGGDDDNNDDINKPTREIFIEAHKSLS-NSDKEERLLL 616
Query: 736 WNRWHEFEVNHGNEDTFREMLR-IKRSVSASYSQTHFILPEY 776
W EFE GN++T ++L+ I + V S + + EY
Sbjct: 617 LESWKEFEQTFGNQETLNQVLKKIPQRVIKRRSDGNGGIEEY 658
Score = 104 (41.7 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 61/276 (22%), Positives = 124/276 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
I++RA+ LP +LW Y + ++++ +P + FER + + P+ W
Sbjct: 131 IWDRAVCLLPRVSQLWFKY-----TFMEDMLGNYPAARAI---FERWMQWKPE-PQAWNS 181
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167
YL+ K R F++ + P + + W Y +F E+ G IE + +++R ++
Sbjct: 182 YLKFEQRLKLFENTRLIFEKYILVHP---YIKTWIKYTKFEERLG-NIENARTIFQRAIE 237
Query: 168 Y---DPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTH 224
+ D + + FI F + ++E ER A V+ Y+I K R +L D T
Sbjct: 238 FLGEDGNDEQLFIAFAKFEEKYKEI-ER-ARVIYK---YAIDHVPKSRA-KDLFDTFTNF 291
Query: 225 ATEISG-LNVDAIIRGGIR-KFTDEV---GRLWTSLADYYIRREL---FEKARDIFEEGM 276
+ + ++ ++ G R ++ +E+ + + DY E+ EK R+I+E +
Sbjct: 292 EKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSI 351
Query: 277 MTVVTVRD------FSVIFDSYSQFEEIMVSAKMAK 306
+ + + ++ +Y+ FEE+ +S M +
Sbjct: 352 GNLPPTNEKKHWKRYIYLWINYALFEEL-ISKDMER 386
Score = 73 (30.8 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W FA+L + AR IF+ A+Q +D +W ++ + E++ K F +L R
Sbjct: 476 WCKFAQLETELGETVRARAIFELAIQ--QPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYR 533
Query: 486 R 486
+
Sbjct: 534 K 534
Score = 63 (27.2 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150
+E L K I+I Y SQK +T+AR F+R L H RI +++++ E
Sbjct: 64 YESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDI----DH-RIPTVWIKYAEM 118
Query: 151 E 151
E
Sbjct: 119 E 119
Score = 41 (19.5 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 881 RKREGSEEDGD-NSADANGKDGES 903
++++ EEDGD N+ +G D ++
Sbjct: 563 QRQQQQEEDGDSNTTKKDGGDDDN 586
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 215 (80.7 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 81/365 (22%), Positives = 169/365 (46%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ +++ +R I+++A+ V+++ + ++W ++AEME++++ A +
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDVDHRNI----TLWLKYAEMEMKNRQVNHARNIWD 138
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPV---QMKLHKSLRLWTFYVDLEESLGN 530
RA T P V E+ +A G V M+ + W Y++ E
Sbjct: 139 RAITILPRVNQFWYKYTYMEEMLGNIA--GCRQVFERWMEWEPEEQAWHSYINFELRYKE 196
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWV 589
++ R++YE+ L + + I YA E+H Y +V+ER V+ F V + ++V
Sbjct: 197 VDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYV 256
Query: 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------LA 640
+ ++F ++ + + ER R +++ A++ P + L+ Y E+ +G ++
Sbjct: 257 AF-ARFEEK--QKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDVIVS 313
Query: 641 KRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA-- 698
KR + Y++ KA P H ++ Y+ RE+YE+AI + P ++ +
Sbjct: 314 KRRFQ-YEEEVKANP-HNYDAWFD-YLRLVESDADADTVREVYERAIANIPPIQEKRHWR 370
Query: 699 ----MCLKYAELEK-SLGEIDRARGIYVFASQFADPRSDT--EFWNRWHEFEVNHGNEDT 751
+ + YA E+ + + +R R +Y + + T + W + +FE+ N
Sbjct: 371 RYIYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQN 430
Query: 752 FREML 756
R L
Sbjct: 431 ARRGL 435
Score = 182 (69.1 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 58/244 (23%), Positives = 112/244 (45%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ +R++YER LD+ + + YA + +++ A +++R +
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 142
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
I P V W Y + + G + R++FE +E P + Y+ + E Y
Sbjct: 143 IL--PRVNQFWYKY-TYMEEMLGN--IAGCRQVFERWMEWEPEEQAWHSYINF---ELRY 194
Query: 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDKDV 696
+A +Y++A V H ++ + Y A E G V + R+++E+A+E ++
Sbjct: 195 KEVDKARSIYEKALVMV--HPEVKNWIKY-AHFEEKHGYVARGRKVFERAVEFFGEEQVS 251
Query: 697 KAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756
+ + + +A E+ E +R R IY +A + E + + FE G+ +++
Sbjct: 252 ENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDVI 311
Query: 757 RIKR 760
KR
Sbjct: 312 VSKR 315
Score = 149 (57.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 99/495 (20%), Positives = 195/495 (39%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A E + +A R +F++AV+ + +++ +A E + K F+ + +
Sbjct: 218 WIKYAHFEEKHGYVARGRKVFERAVEF-FGEEQVSENLYVAFARFEEKQKEFERVRVIYK 276
Query: 486 RATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
A P + + N V K R +E+ + + R YE +
Sbjct: 277 YALDRIPKQQAQELFK---NYTVFEKRFGDRR------GIEDVI--VSKRRFQYEEEVKA 325
Query: 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKT 602
+Y L+E + VYER + K W Y+ ++ Y +
Sbjct: 326 NPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWINYALYEEL 385
Query: 603 KL---ERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657
++ ER R++++ +E P ++L Y + E + A + A P +
Sbjct: 386 EVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTAIGKCPKN 445
Query: 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
+ +++ YI ++ + R++YE+ +E P+ +K+AELE LG+ DR+R
Sbjct: 446 K---LFKGYIELELQLREFDRCRKLYEKYLEFS-PENCTT--WIKFAELETILGDTDRSR 499
Query: 718 GIYVFASQFADPRSDTE--FWNRWHEFEVNHGNEDTFREMLR--IKRS----VSASYSQT 769
I+ A PR D W + +FE+ D R + + ++R+ V SY+Q
Sbjct: 500 AIFELA--IGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKVWISYAQF 557
Query: 770 HFILP-EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALE--RQLAPAANNGNAKDSSRKV 826
+ E +Q+ +++ ++A ++ E+ + LE R + K+ RK+
Sbjct: 558 ELSIDTEDRVQRCRQV-YEEANKGMQNCEEKEERLMLLESWRDYEEEFGSFTHKERVRKL 616
Query: 827 GFVSAGVESQTDGGIKTTANHXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGGLARKREGS 886
+ V+ + K TA Q ++ + +K++
Sbjct: 617 --LPEKVKKRR----KITAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKMWKKQQQQ 670
Query: 887 EE-DGDNSADANGKD 900
EE D D D N K+
Sbjct: 671 EEEDDDEEEDENDKE 685
Score = 130 (50.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 56/264 (21%), Positives = 112/264 (42%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
TLW+ +A++ + + +AR I+D+A+ + + + W ++ ME N G ++
Sbjct: 115 TLWLKYAEMEMKNRQVNHARNIWDRAITI----LPRVNQFWYKYTYMEEMLGNIAGCRQV 170
Query: 484 MRRATA-EP---------SVEVR-RRV--AADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
R EP + E+R + V A E + +H ++ W Y EE G
Sbjct: 171 FERWMEWEPEEQAWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGY 230
Query: 531 LESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587
+ R V+ER ++ + + + +A E+ K FE +Y+ + +++
Sbjct: 231 VARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQEL 290
Query: 588 WVTYLSKFVKRYGKTK-LER---ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRA 643
+ Y + F KR+G + +E ++ F+ E + Y +L E A
Sbjct: 291 FKNY-TVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTV 349
Query: 644 MKVYDQATKAVPNHEKLGMYEIYI 667
+VY++A +P ++ + YI
Sbjct: 350 REVYERAIANIPPIQEKRHWRRYI 373
Score = 120 (47.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 45/217 (20%), Positives = 95/217 (43%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL H+ +W+ Y E + + AR +DRA+ LP + ++ W
Sbjct: 95 EVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILP--RVNQFWY 152
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y E G I +V+ R+++++P E + +L + ++ S+ +
Sbjct: 153 KYTYMEEMLG-NIAGCRQVFERWMEWEPE--EQAWHSYINFELRYKEVDKARSIY-EKAL 208
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE-VGR-LWTSLADYYI 260
+ + K+ W++ H G V + F +E V L+ + A +
Sbjct: 209 VMVHPEVKN--WIKYAHFEEKHGYVARGRKV---FERAVEFFGEEQVSENLYVAFARFEE 263
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
+++ FE+ R I++ + + + +F +Y+ FE+
Sbjct: 264 KQKEFERVRVIYKYALDRIPK-QQAQELFKNYTVFEK 299
Score = 107 (42.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 45/176 (25%), Positives = 76/176 (43%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTVDPMKAVGKPHT-----LWVAFA 430
++ NPHN + W +++ E + + Y A+ + P++ K H LW+ +A
Sbjct: 323 VKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPPIQE--KRHWRRYIYLWINYA 380
Query: 431 KLYETY--KDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
LYE KD R ++ ++ + +K A IW + + E+R KN + A RR
Sbjct: 381 -LYEELEVKDPERTRQVYKACLELIPHKKFT-FAKIWLLYGQFEIRQKNLQNA----RRG 434
Query: 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
A G P + KL K Y++LE L + R +YE+ L+
Sbjct: 435 LG----------TAIGKCP-KNKLFKG------YIELELQLREFDRCRKLYEKYLE 473
Score = 98 (39.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/105 (22%), Positives = 51/105 (48%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
++ER ++ P + WH+Y+ N + + E + + +E+ALV +H + WI
Sbjct: 170 VFERWMEWEPEE-QAWHSYI--------NFELRYKEVDKARSIYEKALVMVHPEVKNWIK 220
Query: 108 YLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQE 151
Y ++ + R+ F+RA+ Q + ++ + RF E++
Sbjct: 221 YAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQ 265
Score = 90 (36.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 97/385 (25%), Positives = 149/385 (38%)
Query: 553 INYALLLE-EHKYFEDAFRVYERGVKIFKYPHVK----DIWVTYLSKFVKRYGKTKLERA 607
INYAL E E K E +VY+ +++ PH K IW+ Y +F R + L+ A
Sbjct: 377 INYALYEELEVKDPERTRQVYKACLELI--PHKKFTFAKIWLLY-GQFEIR--QKNLQNA 431
Query: 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667
R A+ P + L+ Y +LE R K+Y++ + P E + I
Sbjct: 432 RRGLGTAIGKCPKNK---LFKGYIELELQLREFDRCRKLYEKYLEFSP--ENCTTW-IKF 485
Query: 668 ARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLK-YAELEKSLGEIDRARGIY----- 720
A I G ++R I+E AI G P D+ + K Y + E E D RG+Y
Sbjct: 486 AELETILGDTDRSRAIFELAI--GQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQ 543
Query: 721 ------VFAS--QFA---DPRSDTEFWNRWHEFEVNHG--NEDTFREMLRIK---RSVSA 764
V+ S QF D + + +E E N G N + E L + R
Sbjct: 544 RTQHVKVWISYAQFELSIDTEDRVQRCRQVYE-EANKGMQNCEEKEERLMLLESWRDYEE 602
Query: 765 SY-SQTHF-----ILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGN 818
+ S TH +LPE + +K ++++ +D D AG E AAN N
Sbjct: 603 EFGSFTHKERVRKLLPEKV-KKRRKITAEDGSD----AGWEEYYDYIFPED---AANQPN 654
Query: 819 AKDSSRKVGFVSAGVESQTDGGIKTTANHXXXXXXXXXXXXXXXXXXIAQKDVPSAVYGG 878
K + + + + D + N A++ P+A G
Sbjct: 655 LKLLAMAKMWKKQQQQEEEDDDEEEDENDKEEQQVPEGKDAQESPE--AEEQEPAAG-GE 711
Query: 879 LARKREGSEEDGDNSADANGKDGES 903
A K +D D S+ ++ D ES
Sbjct: 712 QAEKEYDDRDDEDESSSSSSSDSES 736
Score = 80 (33.2 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 30/134 (22%), Positives = 59/134 (44%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ + ++ + W
Sbjct: 102 IYERALDVDHRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITILPRVNQFWYK 153
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y +E + I R+ F+R + P ++ W Y+ F E ++ + +Y +
Sbjct: 154 YTYMEEMLGN--IAGCRQVFERWMEWEP---EEQAWHSYINF-ELRYKEVDKARSIYEKA 207
Query: 166 LKYDPSHIEDFIEF 179
L ++++I++
Sbjct: 208 LVMVHPEVKNWIKY 221
Score = 74 (31.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 34/148 (22%), Positives = 61/148 (41%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 113 NITLWLKYA----EMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYME-EMLGNIA-- 165
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + W Y+ K + KAR +++AL + V +
Sbjct: 166 -----GCRQVFERWM-EWEPEEQAWHSYINFELRYKEVDKARSIYEKAL--VMVHPEVKN 217
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKY 168
W Y F E+ G + +V+ R +++
Sbjct: 218 WIKYAHFEEKHGY-VARGRKVFERAVEF 244
Score = 65 (27.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T W+ FA+L D +R IF+ A+ +D +W + + E+ + + L
Sbjct: 480 TTWIKFAELETILGDTDRSRAIFELAI--GQPRLDMPEVLWKSYIDFEIEQEEYDNTRGL 537
Query: 484 MRR 486
+R
Sbjct: 538 YKR 540
Score = 57 (25.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 24/100 (24%), Positives = 45/100 (45%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPH-----TLWVAFAKL 432
L +P N W +K E + IL T+ R + + A+G+P LW ++
Sbjct: 472 LEFSPENCTTW---IKFAE---LETILGDTDRSRAIFEL-AIGQPRLDMPEVLWKSYIDF 524
Query: 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472
++ N R ++ + +Q +T H+ +W +A+ EL
Sbjct: 525 EIEQEEYDNTRGLYKRLLQ---RT-QHV-KVWISYAQFEL 559
Score = 47 (21.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151
WI Y + S + + ++R ++RAL H I ++L++ E E
Sbjct: 83 WIKYAQWEESLQEVQRSRSIYERALDV----DHRNI-TLWLKYAEME 124
Score = 46 (21.3 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 258 YYIR-RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMA 305
Y R R++FE+A + F E ++ F+ + +FE + V K A
Sbjct: 230 YVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYA 278
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 214 (80.4 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 62/247 (25%), Positives = 119/247 (48%)
Query: 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYE 573
++++W Y EES + R+V+ER ++ + + YA ++K+ A V++
Sbjct: 91 NIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWD 150
Query: 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633
R V + P V +W Y+ + G + AR++FE ++ +P D + +L + K
Sbjct: 151 RAVTLL--PRVDQLWYKYIH-MEEILGN--IAGARQIFERWMDWSP-D--QQGWLSFIKF 202
Query: 634 EEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693
E Y +RA +Y+ + V H K+ Y Y + V + R +YE+A E D
Sbjct: 203 ELRYNEIERARTIYE---RFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYERATEKLADD 259
Query: 694 KDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFR 753
++ + + + +AE E+ E++RAR IY FA + + ++ FE +G+++
Sbjct: 260 EEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIE 319
Query: 754 EMLRIKR 760
+ + KR
Sbjct: 320 DAIVGKR 326
Score = 192 (72.6 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 87/384 (22%), Positives = 168/384 (43%)
Query: 353 KDVDLRLARLEHLMNRRP---ELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA 409
KD +++L R + N+ P ++ +LR+ E R K + T ++ Y
Sbjct: 18 KDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDST-ELSDYRLR 76
Query: 410 VRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467
R D ++ +WV +A+ E+ KD A AR ++++A++ +Y+ +H ++W ++
Sbjct: 77 RRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDYR--NH--TLWLKY 132
Query: 468 AEMELRHKNFKGALELMRRA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHK 513
AE E+++K A + RA T P V E+ +A + + M
Sbjct: 133 AEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAG-ARQIFERWMDWSP 191
Query: 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI--IINYALLLEEHKYFEDAFRV 571
+ W ++ E +E R +YER + + P++ I YA + V
Sbjct: 192 DQQGWLSFIKFELRYNEIERARTIYERFV---LCHPKVSAYIRYAKFEMKGGEVARCRSV 248
Query: 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631
YER + +I ++F +R ++ERAR +++ A++ P + LY ++
Sbjct: 249 YERATEKLADDEEAEILFVAFAEFEERC--KEVERARFIYKFALDHIPKGRAEDLYRKFV 306
Query: 632 KLEEDYG---------LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREI 682
E+ YG + KR + D+ K+ N++ ++ Y+ + + REI
Sbjct: 307 AFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDS--WFD-YVRLEESVGNKDRIREI 363
Query: 683 YEQAIESGLPDKDVKAMCLKYAEL 706
YE+AI + +P + K +Y L
Sbjct: 364 YERAI-ANVPPAEEKRYWQRYIYL 386
Score = 182 (69.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+LW Y+ +EE LGN+ R ++ER +D Q +++ + E A +YER
Sbjct: 161 QLWYKYIHMEEILGNIAGARQIFERWMDWS-PDQQGWLSFIKFELRYNEIERARTIYERF 219
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET-APADAVKPLYLQYAKLE 634
V +P V ++ Y +KF + G+ + R R ++E A E A + + L++ +A+ E
Sbjct: 220 VLC--HPKVS-AYIRY-AKFEMKGGE--VARCRSVYERATEKLADDEEAEILFVAFAEFE 273
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG---------VPKTREIYEQ 685
E +RA +Y A +P +Y ++A + +G V K R YE
Sbjct: 274 ERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQ-YGDKEGIEDAIVGKRRFQYED 332
Query: 686 AIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVN 745
+ + D Y LE+S+G DR R IY A P + +W R+ +N
Sbjct: 333 EVRKSPSNYD---SWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWIN 389
Query: 746 H 746
+
Sbjct: 390 Y 390
Score = 167 (63.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 61/251 (24%), Positives = 115/251 (45%)
Query: 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRV 571
+++ LW Y + E + S R V++R + L Q+ Y + E A ++
Sbjct: 123 YRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQI 182
Query: 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631
+ER + + + W++++ KF RY + +ERAR ++E V P + Y++YA
Sbjct: 183 FERWMD---WSPDQQGWLSFI-KFELRYNE--IERARTIYERFVLCHPKVSA---YIRYA 233
Query: 632 KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE-IFGVPKTREIYEQAIESG 690
K E G R VY++AT+ + + E+ + + A E V + R IY+ A++
Sbjct: 234 KFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDH- 292
Query: 691 LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA---DPRSDTEFWNRWHEF---EV 744
+P + + K+ EK G+ + V +F + R ++ W ++ E
Sbjct: 293 IPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEE 352
Query: 745 NHGNEDTFREM 755
+ GN+D RE+
Sbjct: 353 SVGNKDRIREI 363
Score = 138 (53.6 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 60/240 (25%), Positives = 111/240 (46%)
Query: 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM--KAVGKPHT-LWVAFAKL 432
+R++P N + W V++ E GN + Y A+ V P K + + LW+ +A L
Sbjct: 334 VRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYA-L 392
Query: 433 YETYK--DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490
+E + DI R ++ + +++ + A IW A+ E+R N GA +++ A +
Sbjct: 393 FEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGK 452
Query: 491 -PSVEV-RRRVAAD---GNEPVQMKLHK--------SLRLWTFYVDLEESLGNLESTRAV 537
P ++ ++ + + GN KL++ + W+ Y +LE SL E RA+
Sbjct: 453 APKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAI 512
Query: 538 YE-RILDLRIATPQIIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595
+E I + P+++ + E E +YER + K H K +WV++ +KF
Sbjct: 513 FELAISQPALDMPELLWKAYIDFEISEGELERTRALYERLLDRTK--HYK-VWVSF-AKF 568
Score = 133 (51.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 70/282 (24%), Positives = 128/282 (45%)
Query: 559 LEEHKYFEDAFR-VYERGVKIFKYPHVKDIWVTYLSKFVKRYG-----KTK-LERARELF 611
LEE +D R +YER + K W Y+ ++ Y +T+ +ER R+++
Sbjct: 350 LEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWIN-YALFEEIETEDIERTRDVY 408
Query: 612 ENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
++ P + ++L A+ E A ++ A P +K+ ++ YI
Sbjct: 409 RECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPK-DKI--FKKYIEI 465
Query: 670 AAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADP 729
++ + + R++YE+ +E P+ + A KYAELE+SL E +RAR I+ A + P
Sbjct: 466 ELQLGNMDRCRKLYERYLEWS-PE-NCYAWS-KYAELERSLVETERARAIFELA--ISQP 520
Query: 730 RSDTE--FWNRWHEFEVNHGN-EDT---FREML-RIKR-SVSASYSQTHFILPEYLMQKD 781
D W + +FE++ G E T + +L R K V S+++ E +++D
Sbjct: 521 ALDMPELLWKAYIDFEISEGELERTRALYERLLDRTKHYKVWVSFAKFEASAAE--LEED 578
Query: 782 QRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSS 823
+ D +D ++ H+ + R + AN KDS+
Sbjct: 579 ENEDEDQEEDVIE----HKKDCIKRARAIFDRANT-YYKDST 615
Score = 120 (47.3 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
+Y + +ERA+ ++ +W+ Y E KF+ AR +DRA+ LP + D++W
Sbjct: 107 DYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLP--RVDQLWY 164
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196
Y+ E G I + +++ R++ + P + ++ F +K +L ER ++
Sbjct: 165 KYIHMEEILG-NIAGARQIFERWMDWSPDQ-QGWLSF-IKFELRYNEIERARTI 215
Score = 79 (32.9 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 68/293 (23%), Positives = 123/293 (41%)
Query: 29 LWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
LW +Y E K +FV +++RA+ LP +LW+ Y I I+ N+
Sbjct: 128 LWLKYA----EFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKY-IHMEEILGNIA----- 177
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR-ALCALPVTQHDRIWE 142
FER + + W+ +++ I +AR ++R LC V+ + R
Sbjct: 178 --GARQIFERWM-DWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIR--- 231
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIED-FIEFLVKSKLWQEAAERLASVLND 199
Y +F E +G + VY R + D E F+ F + +E ER +
Sbjct: 232 -YAKF-EMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEV-ERARFIYKF 288
Query: 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT--DEVGRLWTSLAD 257
+ KG+ + L+ + + + G+ DAI+ G R+F DEV + ++
Sbjct: 289 ALDHIPKGRAED-LYRKFVAFEKQYGDK-EGIE-DAIV--GKRRFQYEDEVRKSPSNYDS 343
Query: 258 Y--YIRRELF----EKARDIFEEGMMTVVTVRD------FSVIFDSYSQFEEI 298
+ Y+R E ++ R+I+E + V + + ++ +Y+ FEEI
Sbjct: 344 WFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEI 396
Score = 56 (24.8 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162
++W+ Y + SQK +AR ++RA+ H +W Y F E + + ++ V+
Sbjct: 93 QVWVKYAQWEESQKDYARARSVWERAIEG-DYRNHT-LWLKYAEF-EMKNKFVNSARNVW 149
Query: 163 RR 164
R
Sbjct: 150 DR 151
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 175 (66.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 80/340 (23%), Positives = 145/340 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELM 484
W+ FA+ E++ I +R +F++AV+ + D++ ++ +A E K A +
Sbjct: 213 WIKFARFEESHGFIHGSRRVFERAVE--FFGDDYIEERLFIAFARFEEGQKEHDRARIIY 270
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
+ A + D + + K + + +E+ + + + YE+ +
Sbjct: 271 KYALDH--------LPKDRTQELFKAYTKHEKKYGDRAGIEDVI--VSKRKYQYEQEVAA 320
Query: 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKT 602
+Y L+E + YER + + K+ W Y+ ++ Y +
Sbjct: 321 NPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEEL 380
Query: 603 KLE---RARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657
+ E R R++++ +E P L+L YA+ E +RA K A P
Sbjct: 381 EAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPR- 439
Query: 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
+KL + YI ++ + R +YE+ +E G P+ V M K+AELE LG+ DRAR
Sbjct: 440 DKL--FRGYIDLEIQLREFERCRMLYEKFLEFG-PENCVTWM--KFAELENLLGDTDRAR 494
Query: 718 GIYVFASQFADPRSDTE--FWNRWHEFEVNHGNEDTFREM 755
I+ A Q PR D W + +FEV G + R++
Sbjct: 495 AIFELAVQ--QPRLDMPELLWKAYIDFEVALGETELARQL 532
Score = 175 (66.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 61/247 (24%), Positives = 112/247 (45%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EE ++ R+++ER LD + + YA + ++K A +++R V
Sbjct: 79 WIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVT 138
Query: 578 IFKYPHVKDIWV--TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635
I P V W TY+ + ++ + AR++FE +E P + Y+ + E
Sbjct: 139 IM--PRVNQFWYKYTYMEEMLEN-----VAGARQVFERWMEWQPEEQAWQTYVNF---EL 188
Query: 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDK 694
Y RA ++Y++ P+ + I AR E G + +R ++E+A+E D
Sbjct: 189 RYKEIDRAREIYERFVYVHPDVKNW----IKFARFEESHGFIHGSRRVFERAVEFFGDDY 244
Query: 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT-EFWNRWHEFEVNHGNEDTFR 753
+ + + +A E+ E DRAR IY +A P+ T E + + + E +G+
Sbjct: 245 IEERLFIAFARFEEGQKEHDRARIIYKYALDHL-PKDRTQELFKAYTKHEKKYGDRAGIE 303
Query: 754 EMLRIKR 760
+++ KR
Sbjct: 304 DVIVSKR 310
Score = 174 (66.3 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 64/242 (26%), Positives = 111/242 (45%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATP--QIIINYALLLEEHKYFEDAFRVYE 573
+ W Y +EE L N+ R V+ER ++ + Q +N+ L +K + A +YE
Sbjct: 145 QFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFEL---RYKEIDRAREIYE 201
Query: 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKP-LYLQYAK 632
R V + +P VK+ W+ + ++F + +G + +R +FE AVE D ++ L++ +A+
Sbjct: 202 RFVYV--HPDVKN-WIKF-ARFEESHGF--IHGSRRVFERAVEFFGDDYIEERLFIAFAR 255
Query: 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA-------RAA-EIFGVPKTREIYE 684
EE RA +Y A +P +++ Y RA E V K + YE
Sbjct: 256 FEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYE 315
Query: 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV 744
Q + + + D L+ E E G+ D+ R Y A P ++ FW R+ +
Sbjct: 316 QEVAANPTNYDAWFDYLRLIEAE---GDRDQIRETYERAISNVPPANEKNFWRRYIYLWI 372
Query: 745 NH 746
N+
Sbjct: 373 NY 374
Score = 151 (58.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 88/402 (21%), Positives = 182/402 (45%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
L++AFA+ E K+ AR+I+ A+ ++ D ++ + + E ++ + G +++
Sbjct: 249 LFIAFARFEEGQKEHDRARIIYKYAL--DHLPKDRTQELFKAYTKHEKKYGDRAGIEDVI 306
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER-ILD 543
++ + + VAA+ P W Y+ L E+ G+ + R YER I +
Sbjct: 307 ---VSKRKYQYEQEVAAN---PTNYDA------WFDYLRLIEAEGDRDQIRETYERAISN 354
Query: 544 LRIATPQ--------IIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHV--KDIWVTYL 592
+ A + + INYAL E E + E ++Y+ +++ + +W+ Y
Sbjct: 355 VPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLY- 413
Query: 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652
++F R +L+RAR+ A+ P D L+ Y LE +R +Y++ +
Sbjct: 414 AQFEIRC--KELQRARKALGLAIGMCPRDK---LFRGYIDLEIQLREFERCRMLYEKFLE 468
Query: 653 AVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLK-YAELEKSL 710
P + M A + G + R I+E A++ P D+ + K Y + E +L
Sbjct: 469 FGPENCVTWMK---FAELENLLGDTDRARAIFELAVQQ--PRLDMPELLWKAYIDFEVAL 523
Query: 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV--NHGNEDTFREM-LRIKRSVSASYS 767
GE + AR +Y + + + W + +FE+ +HG+ E+ +++ R + Y
Sbjct: 524 GETELARQLY---ERLLERTQHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRI---YE 577
Query: 768 QTHFILPEYLMQKDQRLSIDDA-KDKLKQAGVHEDEMAALER 808
+ + +L + L K+ R+ + +A +D + A ++ +++
Sbjct: 578 RANEMLRQ-LGDKESRVLLLEAWRDFERDASDSQEMQKVMDK 618
Score = 145 (56.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 64/262 (24%), Positives = 120/262 (45%)
Query: 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRV 571
H+++ LW Y ++E + R +++R + + Q Y + E + A +V
Sbjct: 107 HRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQV 166
Query: 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631
+ER ++ + + W TY++ F RY +++RARE++E V P D VK ++++A
Sbjct: 167 FERWME---WQPEEQAWQTYVN-FELRY--KEIDRAREIYERFVYVHP-D-VKN-WIKFA 217
Query: 632 KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESG 690
+ EE +G + +V+++A + + I AR E + R IY+ A++
Sbjct: 218 RFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDH- 276
Query: 691 LPDKDVKAMCLKYAELEKSLGEIDRARGI---------YVFASQFADPRSDTEFWNRWHE 741
LP + + Y + EK G DRA GI Y + + A ++ + W +
Sbjct: 277 LPKDRTQELFKAYTKHEKKYG--DRA-GIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLR 333
Query: 742 FEVNHGNEDTFREMLRIKRSVS 763
G+ D RE +R++S
Sbjct: 334 LIEAEGDRDQIRETY--ERAIS 353
Score = 137 (53.3 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 65/312 (20%), Positives = 134/312 (42%)
Query: 378 LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPH---TLWVAFAKLYE 434
LR+N V W +K + +Q + + R++ +A+ H TLW+ +A++
Sbjct: 69 LRKNRMVVSHW---IKYAQWEEQQQEI---QRARSIWE-RALDNEHRNVTLWLKYAEMEM 121
Query: 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EP-- 491
K + +AR ++D+AV + + + W ++ ME +N GA ++ R +P
Sbjct: 122 KNKQVNHARNLWDRAVTI----MPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEE 177
Query: 492 -------SVEVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542
+ E+R + E + + +H ++ W + EES G + +R V+ER +
Sbjct: 178 QAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAV 237
Query: 543 DL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY 599
+ ++ I +A E K + A +Y+ + ++++ Y +K K+Y
Sbjct: 238 EFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAY-TKHEKKY 296
Query: 600 G-KTKLER---ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655
G + +E ++ ++ E A + Y +L E G + + Y++A VP
Sbjct: 297 GDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVP 356
Query: 656 NHEKLGMYEIYI 667
+ + YI
Sbjct: 357 PANEKNFWRRYI 368
Score = 112 (44.5 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 44/217 (20%), Positives = 99/217 (45%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + +ERAL H+ +W+ Y E K + AR +DRA+ +P + ++ W
Sbjct: 91 EIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMP--RVNQFWY 148
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202
Y ++E+ + + +V+ R++++ P E + V +L + +R + ++F
Sbjct: 149 KYT-YMEEMLENVAGARQVFERWMEWQPE--EQAWQTYVNFELRYKEIDRAREIY--ERF 203
Query: 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYI 260
+ K+ W++ +H I G + + F D+ RL+ + A +
Sbjct: 204 VYVHPDVKN--WIKFARFEESHGF-IHGSR--RVFERAVEFFGDDYIEERLFIAFARFEE 258
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
++ ++AR I++ + + R +F +Y++ E+
Sbjct: 259 GQKEHDRARIIYKYALDHLPKDRT-QELFKAYTKHEK 294
Score = 79 (32.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 35/158 (22%), Positives = 68/158 (43%)
Query: 26 SLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEY 84
++ LW +Y + + +++RA+ +P + W+ Y +++N+
Sbjct: 109 NVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYME-EMLENVA------ 161
Query: 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIY 144
FER + + + W Y+ K I +AR ++R + P ++ W +
Sbjct: 162 -GARQVFERWMEWQPE-EQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKN---WIKF 216
Query: 145 LRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEF 179
RF E G I S RV+ R +++ +IE+ FI F
Sbjct: 217 ARFEESHGF-IHGSRRVFERAVEFFGDDYIEERLFIAF 253
Score = 57 (25.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVE 149
TFE L + WI Y + Q+ I +AR ++RAL +H + ++L++ E
Sbjct: 64 TFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALD----NEHRNV-TLWLKYAE 118
Query: 150 QE 151
E
Sbjct: 119 ME 120
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 130 (50.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 68/303 (22%), Positives = 132/303 (43%)
Query: 522 VDLEESLGNLESTRAV--YERILDLRIATPQIIINYA---LLLE--EHKYFEDAFRVYER 574
+D E+ G++ S Y+R ++ +Y L L+ + + + +E+
Sbjct: 285 LDFEKQFGDINSIEETISYKRKMEYETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEK 344
Query: 575 GVKIFKYPHV-KDI-WVTYLSKFVKR--YGKTKLERA---RELFENAVETA-PAD--AVK 624
+ + + K++ W Y+ +++ Y + +LE + ELF+ ++ P
Sbjct: 345 AIVDSRPKELSKNVQWKRYIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFS 404
Query: 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYE 684
++L YAK + +A K+ +A P K ++ YI ++ + R+IYE
Sbjct: 405 KIWLMYAKFLIRHDDVPKARKILGKAIGLCP---KAKTFKGYIELEVKLKEFDRVRKIYE 461
Query: 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFA----SQFADPRSDTEFWNRWH 740
+ IE D + + +Y ELE++LG+ DR RGIY A S F + ++
Sbjct: 462 KFIEFQPSDLQIWS---QYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYI 518
Query: 741 EFEVNHGNEDTFREMLR--IKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQAGV 798
FE + R++ R ++ + + S F + + +Q+L +D AK L+ V
Sbjct: 519 TFETESQEFEKARKLYRRYLELNQYSPQSWIEFAMYQTSTPTEQQL-LDLAK--LQSENV 575
Query: 799 HED 801
ED
Sbjct: 576 DED 578
Score = 127 (49.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 45/192 (23%), Positives = 87/192 (45%)
Query: 91 FERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150
FERAL+ +WI Y++ K I AR +RA+ LP + D++W YL VE+
Sbjct: 88 FERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLP--RVDKLWYKYL-IVEE 144
Query: 151 EGIPIETSLRVYRRYLKYDP--SHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGK 208
+E +Y ++ +P + F++F ++ K W E + Y +
Sbjct: 145 SLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGVREIYSK-------Y-VMAH 196
Query: 209 TKHRLWLELCDLLTTHA-TEIS----GLNVDAIIR-GGIRKFTD-EVGRLWTSLADYYIR 261
+ + WL+ H TE + L +D + ++ ++D EV +L S A +
Sbjct: 197 PQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWEAA 256
Query: 262 RELFEKARDIFE 273
++ +E++ +++
Sbjct: 257 QQEYERSSALYQ 268
Score = 104 (41.7 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 49/245 (20%), Positives = 114/245 (46%)
Query: 362 LEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQIL-TYTEAVRTVDPMKAVG 420
+E ++ + ++ +L N ++ + W + + + KQI+ T+ +A+ P K +
Sbjct: 297 IEETISYKRKMEYETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEKAIVDSRP-KELS 355
Query: 421 KPHTLWVAFAKLYETY-----KDIANARV---IFDKAVQ--VNYKTVDHLASIWCEWAEM 470
K + W + L+ Y ++ N+ + +F + + + +K + IW +A+
Sbjct: 356 K-NVQWKRYIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFT-FSKIWLMYAKF 413
Query: 471 ELRHKNFKGALELMRRA--------TAEPSVEVRRRVAA-DGNEPVQMKLHK----SLRL 517
+RH + A +++ +A T + +E+ ++ D + K + L++
Sbjct: 414 LIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQI 473
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLR--IATPQIIINYALLLEEHKYFEDAFRVYERG 575
W+ Y +LEE+LG+ + R +Y LD T + I +LL+++ FE + +E+
Sbjct: 474 WSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKI---VLLQKYITFETESQEFEKA 530
Query: 576 VKIFK 580
K+++
Sbjct: 531 RKLYR 535
Score = 85 (35.0 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 32/123 (26%), Positives = 59/123 (47%)
Query: 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534
K FKG +EL E ++ RV + ++ + L++W+ Y +LEE+LG+ +
Sbjct: 438 KTFKGYIEL------EVKLKEFDRVRKIYEKFIEFQ-PSDLQIWSQYGELEENLGDWDRV 490
Query: 535 RAVYERILDLR--IATPQ--III--NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588
R +Y LD T + I++ Y E + FE A ++Y R +++ +Y W
Sbjct: 491 RGIYTIALDENSDFLTKEAKIVLLQKYITFETESQEFEKARKLYRRYLELNQYS--PQSW 548
Query: 589 VTY 591
+ +
Sbjct: 549 IEF 551
Score = 74 (31.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 38/152 (25%), Positives = 62/152 (40%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
RN + W RY + E +R I+ERAL LW Y+ L VK I
Sbjct: 60 RNRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELK-VKC--IN 116
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
H N RA+ T+ ++ ++W YL S + R + + C+L +
Sbjct: 117 HAR-----NLMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTK-WCSLEPGVN--A 168
Query: 141 WEIYLRF-VEQEGIPIETSLR-VYRRYLKYDP 170
W ++ F + Q+ +R +Y +Y+ P
Sbjct: 169 WNSFVDFEIRQKNW---NGVREIYSKYVMAHP 197
Score = 72 (30.4 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 32/127 (25%), Positives = 52/127 (40%)
Query: 27 LKLWWRYLVAKREAP-FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYE 85
+ LW RY+ A+ + + RA+ LP KLW+ YLI S+ N+ I Y
Sbjct: 99 IPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKLWYKYLIVEESL-NNVEIVRSLY- 156
Query: 86 TLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYL 145
T + E + W +++ QK R + + + A P Q W ++
Sbjct: 157 TKWCSLEPGV-------NAWNSFVDFEIRQKNWNGVREIYSKYVMAHPQMQ---TWLKWV 206
Query: 146 RFVEQEG 152
RF + G
Sbjct: 207 RFENRHG 213
Score = 70 (29.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 35/149 (23%), Positives = 55/149 (36%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAV---------------QVNYKTVDHLASIWCEWAE 469
+W+ +AK + D+ AR I KA+ +V K D + I+ ++ E
Sbjct: 406 IWLMYAKFLIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIE 465
Query: 470 MELRHKNFKGAL-ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL 528
+ EL V +A D N K K + L Y+ E
Sbjct: 466 FQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQK-YITFETES 524
Query: 529 GNLESTRAVYERILDLRIATPQIIINYAL 557
E R +Y R L+L +PQ I +A+
Sbjct: 525 QEFEKARKLYRRYLELNQYSPQSWIEFAM 553
Score = 59 (25.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/139 (23%), Positives = 63/139 (45%)
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDD 200
W Y +F E E + + ++ R L D S I +I + + ++L + +++N
Sbjct: 68 WIRYAQF-EIEQHDMRRARSIFERALLVDSSFIPLWIRY-IDAELKVKCINHARNLMN-- 123
Query: 201 QFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD-EVG-RLWTSLADY 258
+ S + +LW + L+ + NV+ I+R K+ E G W S D+
Sbjct: 124 RAISTLPRVD-KLWYKY--LIVEESLN----NVE-IVRSLYTKWCSLEPGVNAWNSFVDF 175
Query: 259 YIRRELFEKARDIFEEGMM 277
IR++ + R+I+ + +M
Sbjct: 176 EIRQKNWNGVREIYSKYVM 194
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 193 (73.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 58/232 (25%), Positives = 115/232 (49%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +A+ E+ K+I AR I+++A+ V+Y+ + ++W ++AEME++++ A +
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNI----TLWLKYAEMEMKNRQVNHARNIWD 244
Query: 486 RA-TAEPSV-----------EVRRRVAADGNEPVQ--MKLHKSLRLWTFYVDLEESLGNL 531
RA T P V E+ +A + + M+ + W Y++ E +
Sbjct: 245 RAITTLPRVNQFWYKYTYMEEMLGNIAG-ARQVFERWMEWQPEEQAWHSYINFELRYKEV 303
Query: 532 ESTRAVYERIL--DLRIATPQII--INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD- 586
+ R +Y + +L + P + I YA E+H YF A +VYER V+ F H+ +
Sbjct: 304 DRARTIYYFLNSPELVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEH 363
Query: 587 IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638
++V + +KF + + + ER R +++ A++ + L+ Y E+ +G
Sbjct: 364 LYVAF-AKFEEN--QKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 412
Score = 173 (66.0 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 59/246 (23%), Positives = 109/246 (44%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577
W Y EESL ++ R++YER LD+ + + YA + +++ A +++R +
Sbjct: 189 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 248
Query: 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
P V W Y + + G + AR++FE +E P + Y+ + E Y
Sbjct: 249 TL--PRVNQFWYKY-TYMEEMLGN--IAGARQVFERWMEWQPEEQAWHSYINF---ELRY 300
Query: 638 GLAKRAMKVYD--QATKAVPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPDK 694
RA +Y + + V H + + Y AR E G R++YE+A+E +
Sbjct: 301 KEVDRARTIYYFLNSPELVLVHPDVKNWIKY-ARFEEKHGYFAHARKVYERAVEFFGDEH 359
Query: 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFRE 754
+ + + +A+ E++ E +R R IY +A + E + + FE G+ +
Sbjct: 360 MDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIED 419
Query: 755 MLRIKR 760
++ KR
Sbjct: 420 IIVSKR 425
Score = 171 (65.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 90/416 (21%), Positives = 175/416 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS-IWCEWAEMELRHKNFKGALELM 484
W+ +A+ E + A+AR ++++AV+ + +H+ ++ +A+ E K F+ +
Sbjct: 328 WIKYARFEEKHGYFAHARKVYERAVE--FFGDEHMDEHLYVAFAKFEENQKEFERVRVIY 385
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
+ A S + + + N + K R +E+ + + R YE +
Sbjct: 386 KYALDRISKQEAQELFK--NYTIFEKKFGDRR------GIEDII--VSKRRFQYEEEVKA 435
Query: 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR--YGKT 602
+Y L+E E VYER + K W Y+ +V Y +
Sbjct: 436 NPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEEL 495
Query: 603 KL---ERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657
+ ER R++++ ++E P ++L YA+ E ++ + + P +
Sbjct: 496 EAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKN 555
Query: 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
+ +++ YI ++ + R++YE+ +E G P+ +K+AELE LG+I+RAR
Sbjct: 556 K---LFKGYIELELQLREFDRCRKLYEKFLEFG-PENCTS--WIKFAELETILGDIERAR 609
Query: 718 GIYVFASQFADPRSDTE--FWNRWHEFEVNHGN-EDT---FREMLRIKRSVSASYSQTHF 771
IY A + PR D W + +FE+ E T +R +L+ + V S F
Sbjct: 610 AIYELA--ISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQF 667
Query: 772 ILP---EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSR 824
L E + K +++ ++A ++ E+ + LE + G D R
Sbjct: 668 ELSSRKEGSLAKCRQI-YEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKER 722
Score = 140 (54.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 109/425 (25%), Positives = 175/425 (41%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAV 410
K+VD R + + +N PEL VL+ +P +V+ W + + E G Y AV
Sbjct: 301 KEVD-RARTIYYFLNS-PEL---VLV--HP-DVKNWIKYARFEEKHGYFAHARKVYERAV 352
Query: 411 RTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV-QVNYKTVDHLASIWCEWAE 469
H L+VAFAK E K+ RVI+ A+ +++ + L +
Sbjct: 353 EFFGDEHM--DEH-LYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL------FKN 403
Query: 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529
+ K F RR E + +RR + E V+ H + W Y+ L ES
Sbjct: 404 YTIFEKKFGD-----RRGI-EDIIVSKRRFQYE--EEVKANPH-NYDAWFDYLRLVESDA 454
Query: 530 NLESTRAVYER-------ILDLRIATPQII--INYALLLE-EHKYFEDAFRVYERGVKIF 579
E+ R VYER I + R I +NYAL E E K E +VY+ +++
Sbjct: 455 EAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELI 514
Query: 580 KYPHVK----DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635
PH K +W+ Y ++F R + L + L ++ P + L+ Y +LE
Sbjct: 515 --PHKKFTFAKMWLLY-AQFEIR--QKNLPVSVSLLGTSIGKCPKNK---LFKGYIELEL 566
Query: 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESGLPDK 694
R K+Y++ + P E + I A I G + + R IYE AI P
Sbjct: 567 QLREFDRCRKLYEKFLEFGP--ENCTSW-IKFAELETILGDIERARAIYELAISQ--PRL 621
Query: 695 DVKAMCLK-YAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFR 753
D+ + K Y + E E +R R +Y + + W + +FE++ E +
Sbjct: 622 DMPEVLWKSYIDFEIEQEETERTRNLY---RRLLQRTQHVKVWISFAQFELSSRKEGSLA 678
Query: 754 EMLRI 758
+ +I
Sbjct: 679 KCRQI 683
Score = 131 (51.2 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 39/154 (25%), Positives = 73/154 (47%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATP--QIIINYALLLEEHKYFEDAFRVYE 573
+ W Y +EE LGN+ R V+ER ++ + IN+ L +E +
Sbjct: 255 QFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYYFLN 314
Query: 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAK 632
+ +P VK+ W+ Y ++F +++G AR+++E AVE + + + LY+ +AK
Sbjct: 315 SPELVLVHPDVKN-WIKY-ARFEEKHGY--FAHARKVYERAVEFFGDEHMDEHLYVAFAK 370
Query: 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666
EE+ +R +Y A + E +++ Y
Sbjct: 371 FEENQKEFERVRVIYKYALDRISKQEAQELFKNY 404
Score = 82 (33.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
IYERAL + LW Y + KN + H N ++RA+ T+ ++ + W
Sbjct: 208 IYERALDVDYRNITLWLKYAEMEM---KNRQVNHAR-----NIWDRAITTLPRVNQFWYK 259
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRF 147
Y +E + I AR+ F+R + P ++ W Y+ F
Sbjct: 260 YTYMEEMLGN--IAGARQVFERWMEWQP---EEQAWHSYINF 296
Score = 65 (27.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 40/178 (22%), Positives = 73/178 (41%)
Query: 26 SLKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
++ LW +Y E K R V I++RA+ LP + W+ Y ++ N+
Sbjct: 219 NITLWLKYA----EMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYME-EMLGNIA-- 271
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
FER + + + W Y+ K + +AR + V H +
Sbjct: 272 -----GARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDV 325
Query: 141 --WEIYLRFVEQEGIPIETSLRVYRRYLKY-DPSHIED--FIEFLVKSKLWQEAAERL 193
W Y RF E+ G + +VY R +++ H+++ ++ F K + Q+ ER+
Sbjct: 326 KNWIKYARFEEKHGY-FAHARKVYERAVEFFGDEHMDEHLYVAF-AKFEENQKEFERV 381
Score = 51 (23.0 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
TFE + + WI Y + S K I +AR ++RAL
Sbjct: 174 TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 213
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 188 (71.2 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 54/226 (23%), Positives = 108/226 (47%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ + K E+ +I AR +F++A+ V+++++ SIW ++AEME+R K A +
Sbjct: 89 WIKYGKWEESIGEIQRARSVFERALDVDHRSI----SIWLQYAEMEMRCKQINHARNVFD 144
Query: 486 RA-TAEPS-----VEVRRRVAADGNEPVQMKLHKSL-------RLWTFYVDLEESLGNLE 532
RA T P ++ N P ++ + + W Y++ E ++
Sbjct: 145 RAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINFELRYKEID 204
Query: 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592
R+VY+R L + Q I YA E + Y +A YE+ ++ F + + +
Sbjct: 205 RARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAF 264
Query: 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638
+ F +R + + ERAR +F+ ++ P++ + ++ Y + E+ +G
Sbjct: 265 ALFEER--QKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFG 308
Score = 169 (64.5 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 65/267 (24%), Positives = 115/267 (43%)
Query: 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555
+R+ DG +M+L W Y EES+G ++ R+V+ER LD+ + I + Y
Sbjct: 71 KRKEFEDGIRKNRMQLAN----WIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQY 126
Query: 556 ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615
A + K A V++R + I P W+ Y +++ + + AR++FE +
Sbjct: 127 AEMEMRCKQINHARNVFDRAITIM--PRAMQFWLKY--SYMEEVIEN-IPGARQIFERWI 181
Query: 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG 675
E P + Y+ + E Y RA VY + H I A+ E G
Sbjct: 182 EWEPPEQAWQTYINF---ELRYKEIDRARSVYQRFLHV---HGINVQNWIKYAKFEERNG 235
Query: 676 -VPKTREIYEQAIESGLPDKDV-KAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733
+ R YE+A+E ++D+ + + + +A E+ E +RARGI+ +
Sbjct: 236 YIGNARAAYEKAMEY-FGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTE 294
Query: 734 EFWNRWHEFEVNHGNEDTFREMLRIKR 760
E + + + E G +++ KR
Sbjct: 295 EIFKHYTQHEKKFGERVGIEDVIISKR 321
Score = 155 (59.6 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 81/364 (22%), Positives = 153/364 (42%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485
W+ +AK E I NAR ++KA++ + D ++ +A E R K + A
Sbjct: 224 WIKYAKFEERNGYIGNARAAYEKAMEY-FGEEDINETVLVAFALFEERQKEHERA----- 277
Query: 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545
R + ++ + ++ E + + + + V +E+ + + T+ YE++++
Sbjct: 278 RGIFKYGLD---NLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQ--YEKMVEEN 332
Query: 546 IATPQIIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLSKFVKR-- 598
+Y LLE E E+ VYER + PH K W Y+ ++
Sbjct: 333 GYNYDAWFDYLRLLENEETDREEVEDVYERAIANIP-PHSYFQEKRYWRRYIYLWINYAL 391
Query: 599 YGKT---KLERARELFENAVETAPADAVK--PLYLQYAKLEEDYGLAKRAMKVYDQATKA 653
Y + +RAR++++ ++ P +++ +A E A K+ A
Sbjct: 392 YEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGK 451
Query: 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
P +KL + YI ++ + R++YE+ +ES P+ +K+AELE LG+
Sbjct: 452 CPK-DKL--FRAYIDLELQLREFDRCRKLYEKFLESS-PESS--QTWIKFAELETLLGDT 505
Query: 714 DRARGIYVFASQFADPRSDTE--FWNRWHEFEV---NHGN-EDTFREMLRIKRSVSASYS 767
DR+R ++ A Q P D W + +FE+ H D + +L+ + S
Sbjct: 506 DRSRAVFTIAVQ--QPALDMPELLWKAYIDFEIACEEHEKARDLYETLLQRTNHIKVWIS 563
Query: 768 QTHF 771
F
Sbjct: 564 MAEF 567
Score = 134 (52.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 55/219 (25%), Positives = 99/219 (45%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
E + + FERAL H+ IW+ Y E K I AR FDRA+ +P + W
Sbjct: 101 EIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAM--QFWL 158
Query: 143 IYLRFVEQ--EGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDD 200
Y ++E+ E IP + +++ R+++++P E + + +L + +R SV
Sbjct: 159 KY-SYMEEVIENIP--GARQIFERWIEWEPP--EQAWQTYINFELRYKEIDRARSVYQ-- 211
Query: 201 QFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE-VGR-LWTSLADY 258
+F + G W++ + G N A + F +E + + + A +
Sbjct: 212 RFLHVHGINVQN-WIKYAKFEERNG--YIG-NARAAYEKAMEYFGEEDINETVLVAFALF 267
Query: 259 YIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
R++ E+AR IF+ G+ + + R IF Y+Q E+
Sbjct: 268 EERQKEHERARGIFKYGLDNLPSNRT-EEIFKHYTQHEK 305
Score = 122 (48.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 84/356 (23%), Positives = 142/356 (39%)
Query: 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK---NFK 478
P W + YK+I AR ++ + + V+ V + W ++A+ E R+ N +
Sbjct: 186 PEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQN----WIKYAKFEERNGYIGNAR 241
Query: 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR--A 536
A E E + VA E Q + ++ ++ + +D S E +
Sbjct: 242 AAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYT 301
Query: 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596
+E+ R+ +II+ + +E V E G + Y D W YL
Sbjct: 302 QHEKKFGERVGIEDVIIS-----KRKTQYEKM--VEENG---YNY----DAWFDYLRLLE 347
Query: 597 KRYGKTKLERARELFENAVETAPADAV---KPLYLQYAKLEEDYGL-----AK---RAMK 645
+T E +++E A+ P + K + +Y L +Y L AK RA +
Sbjct: 348 NE--ETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQ 405
Query: 646 VYDQATKAVPNHEKLGMYEIYIARAA-EI--FGVPKTREIYEQAIESGLPDKDVKAMCLK 702
VY +P H+ +++I A EI + R+I AI DK +A
Sbjct: 406 VYKACIDIIP-HKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRA---- 460
Query: 703 YAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI 758
Y +LE L E DR R +Y + + P S ++ W ++ E E G+ D R + I
Sbjct: 461 YIDLELQLREFDRCRKLYEKFLE-SSPES-SQTWIKFAELETLLGDTDRSRAVFTI 514
Score = 111 (44.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 65/303 (21%), Positives = 127/303 (41%)
Query: 377 LLRQNPHNVEQWHRRVKIFEGNPT--KQIL-TYTEAVRTVDPM-----KAVGKPHT-LWV 427
++ +N +N + W +++ E T +++ Y A+ + P K + + LW+
Sbjct: 328 MVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWI 387
Query: 428 AFAKLYETY--KDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
+A LYE KD AR ++ + + +KT A +W +A E+R + A ++M
Sbjct: 388 NYA-LYEELVAKDFDRARQVYKACIDIIPHKTFT-FAKVWIMFAHFEIRQLDLNAARKIM 445
Query: 485 RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544
A G P +L+ Y+DLE L + R +YE+ L+
Sbjct: 446 G--------------VAIGKCPKD-------KLFRAYIDLELQLREFDRCRKLYEKFLES 484
Query: 545 RIATPQIIINYALLLEEHKYFEDAFR-VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603
+ Q I +A L E D R V+ V+ + +W Y+ F +
Sbjct: 485 SPESSQTWIKFAEL-ETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYID-F--EIACEE 540
Query: 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663
E+AR+L+E ++ V ++ + ++ A++A + +Q+ + E+L +
Sbjct: 541 HEKARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLL 600
Query: 664 EIY 666
E +
Sbjct: 601 EAW 603
Score = 97 (39.2 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 37/159 (23%), Positives = 69/159 (43%)
Query: 22 RNPFSLKLWWRYLVAKRE-APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
+N L W +Y + ++ ++ERAL S +W Y + + I
Sbjct: 81 KNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQ---IN 137
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140
H N F+RA+ M + + W+ Y + I AR+ F+R + P Q
Sbjct: 138 HAR-----NVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQ---A 189
Query: 141 WEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF 179
W+ Y+ F E I+ + VY+R+L +++++I++
Sbjct: 190 WQTYINF-ELRYKEIDRARSVYQRFLHVHGINVQNWIKY 227
Score = 85 (35.0 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 38/167 (22%), Positives = 71/167 (42%)
Query: 26 SLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLW--HAYLIERLSIVKNLPITHP 82
S+ +W +Y + R +++RA+ +P + + W ++Y+ E +++N+P
Sbjct: 119 SISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYSYMEE---VIENIP---- 171
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
FER + + W Y+ K I +AR + R L + + W
Sbjct: 172 ---GARQIFER-WIEWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQN--WI 225
Query: 143 IYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIE-FLVKSKLWQE 188
Y +F E+ G I + Y + ++Y ED E LV L++E
Sbjct: 226 KYAKFEERNGY-IGNARAAYEKAMEYFGE--EDINETVLVAFALFEE 269
Score = 83 (34.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 355 VDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHR--RVKIFEGNPTKQILTYTEAVRT 412
+DL L E +R +L L +P + + W + ++ G+ + +T AV+
Sbjct: 462 IDLELQLRE--FDRCRKLYEK-FLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQ- 517
Query: 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472
P A+ P LW A+ ++ AR +++ +Q +T +H+ +W AE E
Sbjct: 518 -QP--ALDMPELLWKAYIDFEIACEEHEKARDLYETLLQ---RT-NHI-KVWISMAEFEQ 569
Query: 473 RHKNFKGALELMRRA 487
NF+GA + RA
Sbjct: 570 TIGNFEGARKAFERA 584
Score = 56 (24.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALE 482
+W++ A+ +T + AR F++A Q N + + L + W E E + G E
Sbjct: 560 VWISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLLEA-WKECETK----SGDQE 614
Query: 483 LMRRA-TAEPS-VEVRRRVAA-DG 503
++R T P V+ RR++ DG
Sbjct: 615 ALKRVETMMPRRVKKRRQIQTEDG 638
Score = 54 (24.1 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 21/109 (19%), Positives = 46/109 (42%)
Query: 24 PFSLKLWWRYLVAKR---EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80
P +++ W +Y + P ++ I+ER ++ P + W Y+ N +
Sbjct: 151 PRAMQFWLKYSYMEEVIENIPGARQ--IFERWIEWEPPE-QAWQTYI--------NFELR 199
Query: 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129
+ E + + ++R L + WI Y + +I AR +++A+
Sbjct: 200 YKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAM 248
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 154 (59.3 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 55/217 (25%), Positives = 107/217 (49%)
Query: 83 EYETLNNTFERAL-VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
E+ + FERAL V +P +W+ Y+E + I AR FDRA+ LP + D++W
Sbjct: 85 EFARARSVFERALDVDSTYIP-LWLKYIECEMKNRNINHARNLFDRAVTQLP--RVDKLW 141
Query: 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQ 201
Y+ E G I +V+ R+LK++P ++ ++ + + E ER + ++
Sbjct: 142 YKYVYMEEMLG-NITGCRQVFERWLKWEPDE-NCWMSYIRMERRYHEN-ERARGIY--ER 196
Query: 202 FYSIKGKTKHRL-WLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260
F + + + L W + +A + + + AI G ++F +E R + + A + I
Sbjct: 197 FVVVHPEVTNWLRWARF-EEECGNAANVRQVYLAAIDALG-QEFLNE--RFFIAFAKFEI 252
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297
R++ +E+AR IF+ + + + ++ Y+ FE+
Sbjct: 253 RQKEYERARTIFKYAIDFMPRSKSME-LYKEYTHFEK 288
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 73/317 (23%), Positives = 136/317 (42%)
Query: 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454
F+G K+ + +A+R A+G H W+ + + K+ A AR +F++A+ V+
Sbjct: 51 FQGRKRKE---FEDAIRR--NRLAMG--H--WMRYGQWELDQKEFARARSVFERALDVDS 101
Query: 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVR--RRVAAD---GN---- 504
+ +W ++ E E++++N A L RA + P V+ + V + GN
Sbjct: 102 TYIP----LWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGC 157
Query: 505 EPV---QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII--INYALLL 559
V +K W Y+ +E E R +YER + + P++ + +A
Sbjct: 158 RQVFERWLKWEPDENCWMSYIRMERRYHENERARGIYERFV---VVHPEVTNWLRWARFE 214
Query: 560 EEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619
EE + +VY + + + + +KF R + + ERAR +F+ A++ P
Sbjct: 215 EECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIR--QKEYERARTIFKYAIDFMP 272
Query: 620 ADAVKPLYLQYAKLEEDYG---------LAKRAMKVYDQATKAVPNHEKLGMYEIYIARA 670
LY +Y E+ +G L KR ++ Y++ K P + + + +
Sbjct: 273 RSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRLQ-YEKLLKDSPYDYDTWLDLLKLEES 331
Query: 671 AEIFGVPKTREIYEQAI 687
A + RE YE+AI
Sbjct: 332 AG--DINTIRETYEKAI 346
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 78/326 (23%), Positives = 140/326 (42%)
Query: 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA-----TAEP------SVE 494
F+ A++ N + H W + + EL K F A + RA T P E
Sbjct: 59 FEDAIRRNRLAMGH----WMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECE 114
Query: 495 VRRRV---AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
++ R A + + +L + +LW YV +EE LGN+ R V+ER L
Sbjct: 115 MKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWE-PDENC 173
Query: 552 IINYALLLEEHKYFED--AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609
++Y + E +Y E+ A +YER V + +P V + W+ + ++F + G R+
Sbjct: 174 WMSYIRM--ERRYHENERARGIYERFVVV--HPEVTN-WLRW-ARFEEECGNAA--NVRQ 225
Query: 610 LFENAVETAPADAVKP-LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI- 667
++ A++ + + ++ +AK E +RA ++ A +P + + +Y+ Y
Sbjct: 226 VYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTH 285
Query: 668 --ARAAEIFGVPKT----REI-YEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720
+ + GV T R + YE+ ++ D D LK LE+S G+I+ R Y
Sbjct: 286 FEKQFGDHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLK---LEESAGDINTIRETY 342
Query: 721 VFASQFADPRSDTEFWNRWHEFEVNH 746
A + W R+ +N+
Sbjct: 343 EKAIAKVPEVVEKNAWRRYVYIWLNY 368
Score = 140 (54.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 95/412 (23%), Positives = 171/412 (41%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALE 482
T W+ +A+ E + AN R ++ A+ + + ++ + +A+ E+R K ++ A
Sbjct: 205 TNWLRWARFEEECGNAANVRQVYLAAIDALGQEFLNE--RFFIAFAKFEIRQKEYERART 262
Query: 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN---LEST----- 534
+ + A ++ R KS+ L+ Y E+ G+ +EST
Sbjct: 263 IFKYA-----IDFMPR-------------SKSMELYKEYTHFEKQFGDHLGVESTVLDKR 304
Query: 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFR-VYERGVKIFKYPHV--KDIWVTY 591
R YE++L ++ L LEE + R YE+ + K P V K+ W Y
Sbjct: 305 RLQYEKLLKDSPYDYDTWLDL-LKLEESAGDINTIRETYEKAIA--KVPEVVEKNAWRRY 361
Query: 592 LSKFV-----KRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAM 644
+ ++ + ++RAR++++ A++ P L+L YA E A
Sbjct: 362 VYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVAR 421
Query: 645 KVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYA 704
K +A P K ++ YI I + R +YE+ I L D + A L YA
Sbjct: 422 KTLGRALGMCP---KPKLFRGYIEFEDAIKQFDRCRILYEKWI---LYDPEACAPWLGYA 475
Query: 705 ELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFE---VNHGN-EDTFREMLRIKR 760
LE LG+ DRAR +Y A + W + +FE + +G ++++LR
Sbjct: 476 ALETKLGDSDRARALYNLAVNQPILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAP 535
Query: 761 SVSASYSQTHFILPEYLMQKDQRLSIDDAKDK---LKQAGVHEDEMAALERQ 809
V S +F + +L D+ ++ ++ V E+ +A L +Q
Sbjct: 536 HVKVWISFANFEIA-HLEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQ 586
Score = 95 (38.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 58/252 (23%), Positives = 112/252 (44%)
Query: 365 LMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM--KAVG 420
++++R L LL+ +P++ + W +K+ E G+ TY +A+ V + K
Sbjct: 300 VLDKR-RLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAW 358
Query: 421 KPHT-LWVAFAKLYET-YKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNF 477
+ + +W+ + E KD+ AR ++ +A++ + +K A +W +A ELR +
Sbjct: 359 RRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFT-FAKLWLMYAMFELRQRKI 417
Query: 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537
A + + RA G P + KL + Y++ E+++ + R +
Sbjct: 418 DVARKTLGRAL--------------GMCP-KPKLFRG------YIEFEDAIKQFDRCRIL 456
Query: 538 YER-IL-DLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK--IFKYPHVKDIWVTYLS 593
YE+ IL D P + YA L + + A +Y V I + P + +W Y+
Sbjct: 457 YEKWILYDPEACAPWL--GYAALETKLGDSDRARALYNLAVNQPILETPEL--VWKAYID 512
Query: 594 -KFVK-RYGKTK 603
+F + YGK +
Sbjct: 513 FEFEEMEYGKAR 524
Score = 95 (38.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 59/257 (22%), Positives = 106/257 (41%)
Query: 517 LWTFYVDLEE-SLGNLESTRAVYERILDL----RIATPQIIINYALLLEEHKYFEDAFRV 571
+W Y EE + +++ R VY+ L L + ++ + YA+ + + A +
Sbjct: 364 IWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKT 423
Query: 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631
R + + P + ++ + +K++ +R R L+E + P +A P +L YA
Sbjct: 424 LGRALGMCPKPKLFRGYIEF-EDAIKQF-----DRCRILYEKWILYDP-EACAP-WLGYA 475
Query: 632 KLEEDYGLAKRAMKVYDQAT-KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG 690
LE G + RA +Y+ A + + +L +++ YI E K R IY+Q + +
Sbjct: 476 ALETKLGDSDRARALYNLAVNQPILETPEL-VWKAYIDFEFEEMEYGKARSIYQQLLRTA 534
Query: 691 LPDKD-VKAMCLKYAELEKSLGE-----------IDRARGIYVFASQFADPRSDTE---- 734
K + + A LE E + RAR ++ A + E
Sbjct: 535 PHVKVWISFANFEIAHLEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQGLKEERVV 594
Query: 735 FWNRWHEFEVNHGNEDT 751
W +FE HG EDT
Sbjct: 595 LLEAWKQFEAMHGTEDT 611
Score = 61 (26.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/131 (24%), Positives = 53/131 (40%)
Query: 27 LKLWWRYLVAKREAPFKKRFV-----IYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81
+ LW +Y+ E K R + +++RA+ LP KLW+ Y+ ++ N IT
Sbjct: 104 IPLWLKYI----ECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYME-EMLGN--ITG 156
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIW 141
FER L W+ Y+ +AR ++R + P + W
Sbjct: 157 -----CRQVFERWL-KWEPDENCWMSYIRMERRYHENERARGIYERFVVVHPEVTN---W 207
Query: 142 EIYLRFVEQEG 152
+ RF E+ G
Sbjct: 208 LRWARFEEECG 218
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 193 (73.0 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 63/238 (26%), Positives = 114/238 (47%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERIL-DLRIATPQIIINYALLLEEHKYFEDAFRVYER 574
++W Y D EES + + R+V+ER L D + + YA +K A V++R
Sbjct: 72 QVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDR 131
Query: 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634
VKI P V W Y+ + G ++ AR++FE ++ +P D + +L + K E
Sbjct: 132 AVKIL--PRVDQFWYKYIH-MEEILGN--IDGARKIFERWMDWSP-D--QQAWLCFIKFE 183
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694
Y +R+ +Y++ P Y + + ++ V R +YE+AIE L D
Sbjct: 184 LRYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQ---VSLARIVYERAIEM-LKDV 239
Query: 695 DVKA--MCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNED 750
+ +A + + +AE E+ E++RAR +Y +A + + ++ FE +GN++
Sbjct: 240 EEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKE 297
Score = 163 (62.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 74/317 (23%), Positives = 143/317 (45%)
Query: 414 DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMEL 472
D ++ +WV +A E+ KD AR ++++A++ +Y+ +H ++W ++AE E+
Sbjct: 62 DQIRGAKTNSQVWVRYADWEESQKDHDRARSVWERALEDESYR--NH--TLWLKYAEFEM 117
Query: 473 RHKNFKGALELMRRATAE-PSVEV-------RRRVAA--DGNEPV---QMKLHKSLRLWT 519
R+K+ A + RA P V+ + DG + M + W
Sbjct: 118 RNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWL 177
Query: 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579
++ E +E +R++YER + L I YA ++ A VYER +++
Sbjct: 178 CFIKFELRYNEIERSRSIYERFV-LCHPKASSFIRYAKFEMKNSQVSLARIVYERAIEML 236
Query: 580 K--YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637
K + I+V + ++F + K ++ERAR L++ A++ P + LY ++ E+ Y
Sbjct: 237 KDVEEEAEMIFVAF-AEF-EELCK-EVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQY 293
Query: 638 G--------LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689
G + R Y+ + P + ++ YI+ + + RE+YE+AI +
Sbjct: 294 GNKEGIDDAIVGRRKLQYEGEVRKNPLNYD-SWFD-YISLEETLGDKDRIREVYERAI-A 350
Query: 690 GLPDKDVKAMCLKYAEL 706
+P + K +Y L
Sbjct: 351 NVPLAEEKRYWQRYIYL 367
Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 75/332 (22%), Positives = 143/332 (43%)
Query: 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514
K D S+W E A + ++N L+ SV R V + V++ L +
Sbjct: 85 KDHDRARSVW-ERALEDESYRNHTLWLKYAEFEMRNKSVNHARNV---WDRAVKI-LPRV 139
Query: 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER 574
+ W Y+ +EE LGN++ R ++ER +D Q + + + E + +YER
Sbjct: 140 DQFWYKYIHMEEILGNIDGARKIFERWMDWS-PDQQAWLCFIKFELRYNEIERSRSIYER 198
Query: 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP--ADAVKPLYLQYAK 632
V +P ++ Y +KF + + L AR ++E A+E + + +++ +A+
Sbjct: 199 FVLC--HPKASS-FIRY-AKFEMKNSQVSL--ARIVYERAIEMLKDVEEEAEMIFVAFAE 252
Query: 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIF---GVPKT----REI-YE 684
EE +RA +Y A +P +Y+ ++A + G+ R++ YE
Sbjct: 253 FEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYE 312
Query: 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV 744
+ + D Y LE++LG+ DR R +Y A + +W R+ +
Sbjct: 313 GEVRKNPLNYD---SWFDYISLEETLGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWI 369
Query: 745 NHGNEDTFREMLR--IKRSVSASYSQTHFILP 774
++ F E+L ++R+ A Y + ++P
Sbjct: 370 DYA---LFEEILAEDVERT-RAVYRECLNLIP 397
Score = 132 (51.5 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 60/280 (21%), Positives = 121/280 (43%)
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543
+R A E S + R + ++ + +++ LW Y + E ++ R V++R +
Sbjct: 75 VRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVK 134
Query: 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603
+ Q Y + E + A +++ER + + + W+ ++ KF RY +
Sbjct: 135 ILPRVDQFWYKYIHMEEILGNIDGARKIFERWMD---WSPDQQAWLCFI-KFELRYNE-- 188
Query: 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN-HEKLGM 662
+ER+R ++E V P + +++YAK E A VY++A + + + E+ M
Sbjct: 189 IERSRSIYERFVLCHPKASS---FIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAEM 245
Query: 663 YEIYIARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE---IDRA-- 716
+ A E+ V + R +Y+ A++ +P + + K+ EK G ID A
Sbjct: 246 IFVAFAEFEELCKEVERARFLYKYALDH-IPKGRAEDLYKKFVAFEKQYGNKEGIDDAIV 304
Query: 717 -RGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
R + + + + W + E G++D RE+
Sbjct: 305 GRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREV 344
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 154 (59.3 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 71/338 (21%), Positives = 150/338 (44%)
Query: 429 FAKLYETYKDIANARVIFDKAVQVNYKT-VDHLASI-WCEWAEMELRHKNFKG----ALE 482
F K + YK+I AR ++K +++ +D I +C + E + ++ K AL+
Sbjct: 211 FIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALK 270
Query: 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT--FYVDLEESLGNLESTRAVYER 540
++ + +E + + + + +LH+SL + FY E+ L ++ ++
Sbjct: 271 ILPKNKSE--LLYKNFLQFQKKYANKDELHESLLIKERIFY---EDELKKNKNDYDIWFN 325
Query: 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYER-GVKIFKYPHVKDIWVTYLSKFVKRY 599
+ L + I ++ +E A + K F ++ +W+ Y S F + Y
Sbjct: 326 YIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIY-LWINY-SIFEELY 383
Query: 600 GKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657
+ ++RAR+++ N ++ + K +++ YA E +A +++ A + +PN
Sbjct: 384 AQN-IQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTIPN- 441
Query: 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
EK+ +E + ++ + + R +Y + +E+ P KA + E SL E++RAR
Sbjct: 442 EKI--FEKFCEFELKLGNIRECRNVYAKYVEA-FPFNS-KAW-ISMINFELSLDEVERAR 496
Query: 718 GIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
I A D + W + + E+N D R++
Sbjct: 497 QIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKL 534
Score = 95 (38.5 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
I + E + FERAL + +W+ Y+E K I AR +R + LP+ +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--EN 139
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSK---LWQEAAERL 193
W+ Y E + +Y R++K+ D S +I F + +E ERL
Sbjct: 140 IFWKKYAHLEEILNNYVNAR-NIYERWIKFKIDESSFLCYIYFEERCNEINKCREIFERL 198
Query: 194 -ASVLNDDQFYS-IKGKTKHR 212
S+ + FY IK + K++
Sbjct: 199 IVSIPKLECFYKFIKFEKKYK 219
Score = 87 (35.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 42/202 (20%), Positives = 85/202 (42%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+++ Y E N+ R+++ L I +I + + + VY +
Sbjct: 410 KIFILYATFELRQLNVNKARSIFNNALQT-IPNEKIFEKFCEFELKLGNIRECRNVYAKY 468
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635
V+ F P W++ ++ F ++ERAR++ E A+ + ++ Y +E
Sbjct: 469 VEAF--PFNSKAWISMIN-F--ELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEI 523
Query: 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIF--GVPKTREIYEQAIESGLPD 693
+ A K+YD+ + H K+ Y+ Y A I+ + R+I E+ IE +
Sbjct: 524 NLQEYDNARKLYDRLLN-ITQHYKV--YKSY-AEFTYIYLDDIEMCRKILEEGIEFCKKN 579
Query: 694 KDVKAMC--LKY-AELEKSLGE 712
+ + C L + ++EK G+
Sbjct: 580 ELINERCILLNFLCDIEKDYGD 601
Score = 52 (23.4 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 38/168 (22%), Positives = 68/168 (40%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
I+ERAL + LW Y+ L I KN+ + N ER ++ + W
Sbjct: 93 IFERALNIDYTNKNLWLKYIEVEL-INKNI-------NSARNLLERVVLLLPLENIFWKK 144
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y LE + + AR ++R + + + + IY E+ I ++ R
Sbjct: 145 YAHLEEILNN--YVNARNIYERWI-KFKIDESSFLCYIYF---EERCNEINKCREIFERL 198
Query: 166 LKYDPSHIEDFIEFL---------VKSKL-WQEAAERLASVLNDDQFY 203
+ P +E F +F+ V+++ +++ E L S D+ FY
Sbjct: 199 IVSIPK-LECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFY 245
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 880 ARKREGSEEDGDNSADANGK 899
++ +GSE D D S D GK
Sbjct: 762 SKDNDGSE-DNDGSDDDEGK 780
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 880 ARKREGSEEDGDNSADANGKD 900
++ +GSE D D+S D +G +
Sbjct: 750 SKDNDGSE-DNDDSKDNDGSE 769
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 882 KREGSEE--DGDNSADANGKDG 901
K+E +++ DGD++ D+ DG
Sbjct: 674 KKEVNDDNVDGDDNDDSEDNDG 695
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 154 (59.3 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 71/338 (21%), Positives = 150/338 (44%)
Query: 429 FAKLYETYKDIANARVIFDKAVQVNYKT-VDHLASI-WCEWAEMELRHKNFKG----ALE 482
F K + YK+I AR ++K +++ +D I +C + E + ++ K AL+
Sbjct: 211 FIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALK 270
Query: 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT--FYVDLEESLGNLESTRAVYER 540
++ + +E + + + + +LH+SL + FY E+ L ++ ++
Sbjct: 271 ILPKNKSE--LLYKNFLQFQKKYANKDELHESLLIKERIFY---EDELKKNKNDYDIWFN 325
Query: 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYER-GVKIFKYPHVKDIWVTYLSKFVKRY 599
+ L + I ++ +E A + K F ++ +W+ Y S F + Y
Sbjct: 326 YIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIY-LWINY-SIFEELY 383
Query: 600 GKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657
+ ++RAR+++ N ++ + K +++ YA E +A +++ A + +PN
Sbjct: 384 AQN-IQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQTIPN- 441
Query: 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
EK+ +E + ++ + + R +Y + +E+ P KA + E SL E++RAR
Sbjct: 442 EKI--FEKFCEFELKLGNIRECRNVYAKYVEA-FPFNS-KAW-ISMINFELSLDEVERAR 496
Query: 718 GIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
I A D + W + + E+N D R++
Sbjct: 497 QIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKL 534
Score = 95 (38.5 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 37/141 (26%), Positives = 61/141 (43%)
Query: 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
I + E + FERAL + +W+ Y+E K I AR +R + LP+ +
Sbjct: 82 IKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPL--EN 139
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHIEDFIEFLVKSK---LWQEAAERL 193
W+ Y E + +Y R++K+ D S +I F + +E ERL
Sbjct: 140 IFWKKYAHLEEILNNYVNAR-NIYERWIKFKIDESSFLCYIYFEERCNEINKCREIFERL 198
Query: 194 -ASVLNDDQFYS-IKGKTKHR 212
S+ + FY IK + K++
Sbjct: 199 IVSIPKLECFYKFIKFEKKYK 219
Score = 87 (35.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 42/202 (20%), Positives = 85/202 (42%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575
+++ Y E N+ R+++ L I +I + + + VY +
Sbjct: 410 KIFILYATFELRQLNVNKARSIFNNALQT-IPNEKIFEKFCEFELKLGNIRECRNVYAKY 468
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635
V+ F P W++ ++ F ++ERAR++ E A+ + ++ Y +E
Sbjct: 469 VEAF--PFNSKAWISMIN-F--ELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEI 523
Query: 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIF--GVPKTREIYEQAIESGLPD 693
+ A K+YD+ + H K+ Y+ Y A I+ + R+I E+ IE +
Sbjct: 524 NLQEYDNARKLYDRLLN-ITQHYKV--YKSY-AEFTYIYLDDIEMCRKILEEGIEFCKKN 579
Query: 694 KDVKAMC--LKY-AELEKSLGE 712
+ + C L + ++EK G+
Sbjct: 580 ELINERCILLNFLCDIEKDYGD 601
Score = 52 (23.4 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 38/168 (22%), Positives = 68/168 (40%)
Query: 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107
I+ERAL + LW Y+ L I KN+ + N ER ++ + W
Sbjct: 93 IFERALNIDYTNKNLWLKYIEVEL-INKNI-------NSARNLLERVVLLLPLENIFWKK 144
Query: 108 Y--LETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRY 165
Y LE + + AR ++R + + + + IY E+ I ++ R
Sbjct: 145 YAHLEEILNN--YVNARNIYERWI-KFKIDESSFLCYIYF---EERCNEINKCREIFERL 198
Query: 166 LKYDPSHIEDFIEFL---------VKSKL-WQEAAERLASVLNDDQFY 203
+ P +E F +F+ V+++ +++ E L S D+ FY
Sbjct: 199 IVSIPK-LECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFY 245
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 880 ARKREGSEEDGDNSADANGK 899
++ +GSE D D S D GK
Sbjct: 762 SKDNDGSE-DNDGSDDDEGK 780
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 880 ARKREGSEEDGDNSADANGKD 900
++ +GSE D D+S D +G +
Sbjct: 750 SKDNDGSE-DNDDSKDNDGSE 769
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 882 KREGSEE--DGDNSADANGKDG 901
K+E +++ DGD++ D+ DG
Sbjct: 674 KKEVNDDNVDGDDNDDSEDNDG 695
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 146 (56.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 67/274 (24%), Positives = 111/274 (40%)
Query: 514 SLRLWTFYVDLE-ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572
+L WT Y E E+ + R++ ER LD+ I I Y L HK A +
Sbjct: 119 NLGQWTRYAKWEIENNHDFPRARSILERALDVNIQHVPFWIQYIQLELSHKNINHARNLM 178
Query: 573 ERGVKIFKYPHVKDIWVTYLS--KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630
ER + P V +W Y+ + +K Y R +FE ++ P +V Y+ +
Sbjct: 179 ERAINTL--PRVNKLWFLYVQTEEMLKNY-----PMVRAVFERWLDWHPDTSVWDAYINF 231
Query: 631 -AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689
A+ EE + + K Y K YE+ R V R ++E A+++
Sbjct: 232 EARYEEKENV-RTIFKKYVHEFPNAGTWYKWIKYEMENNRD----DVNTVRAVFESAVDT 286
Query: 690 GLP--------DKDVKAMCLKYAELEKSLGEIDRARGIYVFAS-------QFADPRSDTE 734
L D++ + + E S GE RA I+ + +D ++ +
Sbjct: 287 LLSNKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKLLLDNKTNKLEISD-KTKSS 345
Query: 735 FWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQ 768
+ + EFE N GN+D+ + + IKR + Y Q
Sbjct: 346 IYTAFVEFEKNFGNKDSIEQSVLIKRRIK--YEQ 377
Score = 143 (55.4 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 110/501 (21%), Positives = 207/501 (41%)
Query: 347 FWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTY 406
FW+ ++ ++L + H N E A + L R N + W V+ T+++L
Sbjct: 157 FWIQYIQ-LELSHKNINHARNLM-ERAINTLPRVN----KLWFLYVQ------TEEMLKN 204
Query: 407 TEAVRTVDPMKAVGKPHT-LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465
VR V P T +W A+ Y++ N R IF K V + A W
Sbjct: 205 YPMVRAVFERWLDWHPDTSVWDAYINFEARYEEKENVRTIFKKYVH-EFPN----AGTWY 259
Query: 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525
+W + E+ +N + + +R A E +V+ ++ N+ + + + WT + E
Sbjct: 260 KWIKYEM--ENNRDDVNTVR-AVFESAVDTLLSNKSEENDDDE-EFATIISSWTSW---E 312
Query: 526 ESLGNLESTRAVYERILD-----LRIATPQIIINYALLLEEHKYF--EDAFR---VYERG 575
S G +++ +LD L I+ Y +E K F +D+ + +R
Sbjct: 313 VSCGEASRANEIFKLLLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRR 372
Query: 576 VK----IFKYPHVKDIWVTYLSKFVKRYGKTKLERA-RELFENAVETAPADAVKPLYLQ- 629
+K I P+ D W Y++ K+ LE A +++ N V Y+
Sbjct: 373 IKYEQEIQNDPYDYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIKWRRYIMF 432
Query: 630 ---YAKLEE-DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA-EIF----GVPKTR 680
YA EE A ++++ K +P H+ +++I + E+ G+ K R
Sbjct: 433 WIWYAFWEEMTNNNPDSAREIWNNCLKVIP-HKSFTFAKVWIGYSEFELRNSEDGLAKAR 491
Query: 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY---VFASQFADPRSDTEFWN 737
+I +AI +K + Y +LEK LG+ +R R ++ + S S+
Sbjct: 492 KILGRAIGQTSINKPKIKIFKYYIDLEKKLGDWNRVRLLFQKWLEVSLLTTSSSELVI-E 550
Query: 738 RWHEFEVNHGNEDTFREMLRIKRSVSAS--YSQTHFILPEYLMQKDQRLSIDDAKDKLKQ 795
++ EFE + D +L R +S + YS + + +Q+ ++++ K++++
Sbjct: 551 KYVEFESSIEEYDRCDSILSSARQLSENPEYSSS------FNLQRLLEITVEFYKEEMQY 604
Query: 796 AGVHEDEMAALERQLAPAANN 816
+ E A L++ P A+N
Sbjct: 605 DKIREIYRALLDKD--PNAHN 623
Score = 131 (51.2 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 79/365 (21%), Positives = 163/365 (44%)
Query: 365 LMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQIL--TYTEAVRTV--DPMKAVG 420
L+ RR + + + +P++ + W + + + + + K L + + V D K++
Sbjct: 368 LIKRRIKYEQEI--QNDPYDYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIK 425
Query: 421 -KPHTL-WVAFAKLYE-TYKDIANARVIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKN 476
+ + + W+ +A E T + +AR I++ ++V +K+ A +W ++E ELR+
Sbjct: 426 WRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFT-FAKVWIGYSEFELRN-- 482
Query: 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK-SLRLWTFYVDLEESLGNLESTR 535
+E + R++ G Q ++K ++++ +Y+DLE+ LG+ R
Sbjct: 483 ------------SEDGLAKARKIL--GRAIGQTSINKPKIKIFKYYIDLEKKLGDWNRVR 528
Query: 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595
++++ L++ + T + L++E++ FE + Y+R I Y S F
Sbjct: 529 LLFQKWLEVSLLTTS---SSELVIEKYVEFESSIEEYDRCDSILSSARQLSENPEYSSSF 585
Query: 596 VKRYGKTKLERAREL-FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654
L+R E+ E E D ++ +Y A L++D A + + ++
Sbjct: 586 -------NLQRLLEITVEFYKEEMQYDKIREIYR--ALLDKDPN-AHNWIS-FALFESSI 634
Query: 655 PNHEKLGMY-----EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709
P+ E+L Y E + A E + TR I+E+A+ + DKD K L E +
Sbjct: 635 PSAEQLEEYLQGDNEEFEATVDES-QIESTRNIFEEAM-TYFKDKDDKESRLVIIEAWRD 692
Query: 710 LGEID 714
E++
Sbjct: 693 FEEVN 697
Score = 111 (44.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 38/152 (25%), Positives = 64/152 (42%)
Query: 22 RNPFSLKLWWRYLVAKREA--PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPI 79
+N +L W RY + E F + I ERAL W Y+ L +
Sbjct: 115 KNRLNLGQWTRYAKWEIENNHDFPRARSILERALDVNIQHVPFWIQYI--------QLEL 166
Query: 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
+H N ERA+ T+ ++ ++W +Y++T K R F+R L P T
Sbjct: 167 SHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFERWLDWHPDTS--- 223
Query: 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171
+W+ Y+ F E E ++++Y+ P+
Sbjct: 224 VWDAYINF-EARYEEKENVRTIFKKYVHEFPN 254
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 118 (46.6 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 54/210 (25%), Positives = 90/210 (42%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 347 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 405
Query: 570 RVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R I K P V +W F ++ G + AR + E A+ +
Sbjct: 406 HVFSRACTIHLPKKPMVHMLWAA----FEEQQGN--INEARNILRTFEECVLGLAM--VR 457
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A ++ A K + + Y I +AR +F + PK+R++
Sbjct: 458 LRRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLAR--HLFKIQKNLPKSRKVL 515
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
+AIE DK+ + L E+E S G++
Sbjct: 516 LEAIER---DKENTKLYLNLLEMEYS-GDL 541
Score = 112 (44.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 38/136 (27%), Positives = 61/136 (44%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K+ +Y R L+A+P S LW Y I L + L P
Sbjct: 124 PYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDP 180
Query: 83 EY-ETLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E T+ TFE A++ T + R+W MY+ Q + + +DR L +P +
Sbjct: 181 ETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYS 239
Query: 139 RIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 240 HHFQRFKEHV-QNNLP 254
Score = 76 (31.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 76 NLPITHPEYETLNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRTFDRALCAL 132
+LP+T E +E+ T+ P+ W+ L+ + + + AR+ FD+
Sbjct: 65 DLPVTETE-ANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHY 123
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
P W+ Y +E+ I+ S VYRR L+ P ++ +I ++
Sbjct: 124 PYCYG--YWKKYAD-LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYI 168
Score = 75 (31.5 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 35/174 (20%), Positives = 68/174 (39%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576
LW + EE GN+ R + + + + + L H E+A R+ + +
Sbjct: 425 LWAAF---EEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAI 481
Query: 577 KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636
K K + + L++ + + K L ++R++ A+E + LYL ++E
Sbjct: 482 KNAKANNESSFYAIKLARHLFKIQKN-LPKSRKVLLEAIERDKENT--KLYLNLLEMEYS 538
Query: 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI---FG--VPKTREIYEQ 685
L + + + KA+ + M + R E FG V K Y++
Sbjct: 539 GDLKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDE 592
Score = 73 (30.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T WV + E + AR FDK ++Y + W ++A++E RH N K + E+
Sbjct: 94 TGWVYLLQYVEQENHLMAARKAFDKFF-IHYP---YCYGYWKKYADLEKRHDNIKQSDEV 149
Query: 484 MRR 486
RR
Sbjct: 150 YRR 152
Score = 37 (18.1 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEI 298
W ++ I E+ +FE +++ +F + + Y + I
Sbjct: 355 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSI 401
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 118 (46.6 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 54/210 (25%), Positives = 90/210 (42%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 346 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 404
Query: 570 RVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R I K P V +W F ++ G + AR + E A+ +
Sbjct: 405 HVFSRACTIHLPKKPMVHMLWAA----FEEQQGN--INEARNILRTFEECVLGLAM--VR 456
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A + A K ++ + Y I +AR +F + PK+R++
Sbjct: 457 LRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLAR--HLFKIQKNLPKSRKVL 514
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
+AIE DK+ + L E+E S G++
Sbjct: 515 LEAIER---DKENTKLYLNLLEMEYS-GDL 540
Score = 112 (44.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 38/136 (27%), Positives = 61/136 (44%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K+ +Y R L+A+P S LW Y I L + L P
Sbjct: 124 PYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDP 180
Query: 83 EYE-TLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E T+ TFE A++ T + R+W MY+ Q + + +DR L +P +
Sbjct: 181 ETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYS 239
Query: 139 RIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 240 HHFQRFKEHV-QNNLP 254
Score = 76 (31.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/108 (24%), Positives = 49/108 (45%)
Query: 76 NLPITHPEYETLNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRTFDRALCAL 132
+LP+T E +E+ T+ P+ W+ L+ + + + AR+ FD+
Sbjct: 65 DLPVTETE-ANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHY 123
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
P W+ Y +E+ I+ S VYRR L+ P ++ +I ++
Sbjct: 124 PYCYG--YWKKYAD-LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYI 168
Score = 73 (30.8 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T WV + E + AR FDK ++Y + W ++A++E RH N K + E+
Sbjct: 94 TGWVYLLQYVEQENHLMAARKAFDKFF-IHYP---YCYGYWKKYADLEKRHDNIKQSDEV 149
Query: 484 MRR 486
RR
Sbjct: 150 YRR 152
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 118 (46.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 53/210 (25%), Positives = 91/210 (43%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 348 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 406
Query: 570 RVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R I K P V +W F ++ G + AR + + E A+ +
Sbjct: 407 HVFSRACTIHLPKKPMVHMLWAA----FEEQQGN--INEARNILKTFEECVLGLAM--VR 458
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A + A K ++ + Y + +AR +F + PK+R++
Sbjct: 459 LRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLAR--HLFKIQKNLPKSRKVL 516
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
+AIE DK+ + L E+E S G++
Sbjct: 517 LEAIER---DKENTKLYLNLLEMEYS-GDL 542
Score = 110 (43.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/136 (27%), Positives = 60/136 (44%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K +Y R L+A+P S LW Y I L + L P
Sbjct: 126 PYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDP 182
Query: 83 EYE-TLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E T+ TFE A++ T + R+W MY+ Q + + +DR L +P +
Sbjct: 183 ETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYS 241
Query: 139 RIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 242 HHFQRFKEHV-QNNLP 256
Score = 81 (33.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 69 ERLSIVKNLPITHPEYET-LNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRT 124
E S V +LP+T E E +E+ T+ P+ W+ L+ + + + AR+
Sbjct: 59 EMASAV-DLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKA 117
Query: 125 FDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
FDR P W+ Y +E+ I+ S VYRR L+ P ++ +I ++
Sbjct: 118 FDRFFIHYPYCYG--YWKKYAD-LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYI 170
Score = 72 (30.4 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 33/134 (24%), Positives = 55/134 (41%)
Query: 362 LEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQI-LTYTEAVRTVDP----- 415
+EH + E+ N + Q+P + + + E + +T TE P
Sbjct: 25 VEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEMASAVDLPVTLTETEANFPPEYEKF 84
Query: 416 MKAV-GKPH--TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472
K V P T WV + E + AR FD+ ++Y + W ++A++E
Sbjct: 85 WKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFF-IHYP---YCYGYWKKYADLEK 140
Query: 473 RHKNFKGALELMRR 486
RH N K + E+ RR
Sbjct: 141 RHDNIKPSDEVYRR 154
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 190 (71.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 56/240 (23%), Positives = 111/240 (46%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G+ ES V+ER + ++
Sbjct: 1638 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KV 1696
Query: 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611
++ A + + + F++A +Y R +K F+ K +WV Y F+ R GK E + +
Sbjct: 1697 FLHLADIYTKSEKFQEAGELYNRMLKRFRQE--KAVWVKY-GAFLLRRGKA--EASHRVM 1751
Query: 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
+ A+E P + ++A+LE G A+RA +++ P ++ ++ +YI
Sbjct: 1752 QRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYP--KRTDVWSVYIDMII 1809
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
+ + R I+E+ I L K +K +Y + EK G + + A ++ + +S
Sbjct: 1810 KHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYVEAKS 1869
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1624 LWLQYMAFHLQATEIEKARAVAERALKTI 1652
Score = 43 (20.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 346 GFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389
G LH V + + R+ L+ R+P L ++V QNP + + H
Sbjct: 684 GDTLHRVLCLSVSEERV--LLCRKPALVSAVEGGQNPKSFSEIH 725
Score = 37 (18.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPH 383
+KD L AR HL N + N H
Sbjct: 386 LKDGTLAYARRNHLSNSKKTFKPEAFKPGNTH 417
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 168 YDPSHIEDFI 177
Y +H+EDF+
Sbjct: 1267 YSETHLEDFV 1276
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 190 (71.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 56/240 (23%), Positives = 111/240 (46%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G+ ES V+ER + ++
Sbjct: 1638 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KV 1696
Query: 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611
++ A + + + F++A +Y R +K F+ K +WV Y F+ R GK E + +
Sbjct: 1697 FLHLADIYTKSEKFQEAGELYNRMLKRFRQE--KAVWVKY-GAFLLRRGKA--EASHRVM 1751
Query: 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
+ A+E P + ++A+LE G A+RA +++ P ++ ++ +YI
Sbjct: 1752 QRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYP--KRTDVWSVYIDMII 1809
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
+ + R I+E+ I L K +K +Y + EK G + + A ++ + +S
Sbjct: 1810 KHGSQKEARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKAKALEYVEAKS 1869
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1624 LWLQYMAFHLQATEIEKARAVAERALKTI 1652
Score = 43 (20.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 346 GFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWH 389
G LH V + + R+ L+ R+P L ++V QNP + + H
Sbjct: 684 GDTLHRVLCLSVSEERV--LLCRKPALVSAVEGGQNPKSFSEIH 725
Score = 37 (18.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPH 383
+KD L AR HL N + N H
Sbjct: 386 LKDGTLAYARRNHLSNSKKTFKPEAFKPGNTH 417
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 168 YDPSHIEDFI 177
Y +H+EDF+
Sbjct: 1267 YSETHLEDFV 1276
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 140 (54.3 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 68/253 (26%), Positives = 110/253 (43%)
Query: 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKY--FEDAFRVYE 573
+LW ++ +EE LGN+ R + ER + +P + E KY E A +YE
Sbjct: 126 QLWYKFIHMEEKLGNIAGARQILERWIH---CSPDQQAWLCFIKFELKYNEIECARSIYE 182
Query: 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV-ETAPADAVKPLYLQYAK 632
R V +P V ++ Y +KF ++G+ +L A ++FE A E A + + L++ +A+
Sbjct: 183 RFVLC--HPKVS-AYIRY-AKFEMKHGQVEL--AMKVFERAKKELADDEEAEILFVAFAE 236
Query: 633 LEEDYGLAK------RAMKVYDQATK-AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQ 685
EE Y A RA +Y + N +K G+ + I K R YE
Sbjct: 237 FEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIG---------KRRCQYED 287
Query: 686 AIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTE--FWNRWHEFE 743
+ + D + LE+++G DR R IY A P E +W R+
Sbjct: 288 EVRKNPLNYD---SWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLW 344
Query: 744 VNHGNEDTFREML 756
+N+ F EM+
Sbjct: 345 INYA---FFAEMV 354
Score = 139 (54.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 90/405 (22%), Positives = 170/405 (41%)
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL--ASIWCEWAEMELRHKNFKGALEL 483
W+ F K Y +I AR I+++ V + K ++ A + ++EL K F+ A
Sbjct: 161 WLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQVELAMKVFERA--- 217
Query: 484 MRRATAEPSVEVRRRVAADGNEPVQMKLH-----KSLRLWTFYVDLEESLGNLESTR-AV 537
+ + E+ A+ E + L ++ L++ +V E+ G+ E A+
Sbjct: 218 KKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAI 277
Query: 538 Y-ERILDLRIATPQIIINYA-----LLLEEHKYFEDAFR-VYERGVKIFKYPHVKD---- 586
+R + +NY + LEE +D R +YER V P ++
Sbjct: 278 IGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYW 337
Query: 587 -----IWVTYLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGL 639
+W+ Y F +E R+++ ++ P + ++L A+ E
Sbjct: 338 QRYIYLWINYA--FFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLN 395
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699
A ++ A P +K+ ++ YI ++ + + R++YE+ +E P + A
Sbjct: 396 LTGARQILGNAIGKAPK-DKI--FKKYIEIELQLRNIDRCRKLYERYLEWS-PG-NCYAW 450
Query: 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTE--FWNRWHEFEVNHGN-EDT---FR 753
KYAE E SL E +R R I+ A + P D W + +FE++ G E T +
Sbjct: 451 -RKYAEFEMSLAETERTRAIFELA--ISQPALDMPELLWKTYIDFEISEGELERTRALYE 507
Query: 754 EML-RIKR-SVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQA 796
+L R K V +++ E+ +++ +I+ KD +K+A
Sbjct: 508 RLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRA 552
Score = 97 (39.2 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 34/160 (21%), Positives = 71/160 (44%)
Query: 22 RNPFSLKLWWRYLVAKREAPFKKRF-VIYERALKALPG----SYKLWHAYLIERLSIVKN 76
+NP + W+ ++ + K R IYERA+ +P + W Y+ ++
Sbjct: 291 KNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFF 350
Query: 77 LPITHPEYETLNNTFERALVTM-HK---MPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ + E+ + + L + H +IW++ + Q +T AR+ A+
Sbjct: 351 AEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKA 410
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172
P D+I++ Y+ +E + I+ ++Y RYL++ P +
Sbjct: 411 P---KDKIFKKYIE-IELQLRNIDRCRKLYERYLEWSPGN 446
Score = 82 (33.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162
++W+ Y + K + +AR +DRA+ LP + D++W ++ E+ G I + ++
Sbjct: 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLP--RVDQLWYKFIHMEEKLG-NIAGARQIL 148
Query: 163 RRYLKYDPSHIE--DFIEFLVK 182
R++ P FI+F +K
Sbjct: 149 ERWIHCSPDQQAWLCFIKFELK 170
Score = 75 (31.5 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 38/137 (27%), Positives = 59/137 (43%)
Query: 518 WTFYVDLEESLGNLESTRAVYE-RILDLRIATPQIIINYALLLE-EHKYFEDAFRVYERG 575
W Y + E SL E TRA++E I + P+++ + E E +YER
Sbjct: 450 WRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERL 509
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTK---------------LERARELFENAVETAPA 620
+ K H K +WV + +KF + K ++RARE+F+ A T
Sbjct: 510 LDRTK--HCK-VWVDF-AKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRA-NTYNK 564
Query: 621 DAVKPLYLQYAKLEEDY 637
D+ L + A L ED+
Sbjct: 565 DSTPELKEERAMLLEDW 581
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 185 (70.2 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 54/243 (22%), Positives = 112/243 (46%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G+ ES V+ER + ++
Sbjct: 1623 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KV 1681
Query: 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611
++ A + + + F++A +Y R +K F+ K +W+ Y F+ R G+ + +
Sbjct: 1682 FLHLADIYTKSEKFQEAGELYNRMLKRFRQE--KAVWIKY-GAFLLRRGQAGA--SHRVM 1736
Query: 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
+ A+E P + ++A+LE G A+RA +++ P ++ ++ +YI
Sbjct: 1737 QRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYP--KRTDVWSVYIDMII 1794
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
+ + R+I+E+ I L K +K +Y + EK G + + A ++ + +S
Sbjct: 1795 KHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKS 1854
Query: 732 DTE 734
E
Sbjct: 1855 SLE 1857
Score = 45 (20.9 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1609 LWLQYMAFHLQATEIEKARAVAERALKTI 1637
Score = 38 (18.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 348 WLH--DVKDVDLRLARLEH---LMNRRPELANSVLLRQNPHNVEQWH 389
WL DV L L+ E L+ R+P L ++V Q+P + + H
Sbjct: 680 WLQAGDVLHRVLCLSETEERNELLCRKPALVSAVEGGQDPKSFSEIH 726
Score = 37 (18.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 352 VKDVDLRLARLEHLMNRR 369
+KD L AR HL N +
Sbjct: 386 LKDGTLAYARFNHLSNSK 403
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 185 (70.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 54/243 (22%), Positives = 112/243 (46%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G+ ES V+ER + ++
Sbjct: 1640 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KV 1698
Query: 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611
++ A + + + F++A +Y R +K F+ K +W+ Y F+ R G+ + +
Sbjct: 1699 FLHLADIYTKSEKFQEAGELYNRMLKRFRQE--KAVWIKY-GAFLLRRGQAGA--SHRVM 1753
Query: 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
+ A+E P + ++A+LE G A+RA +++ P ++ ++ +YI
Sbjct: 1754 QRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYP--KRTDVWSVYIDMII 1811
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
+ + R+I+E+ I L K +K +Y + EK G + + A ++ + +S
Sbjct: 1812 KHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKS 1871
Query: 732 DTE 734
E
Sbjct: 1872 SLE 1874
Score = 45 (20.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1626 LWLQYMAFHLQATEIEKARAVAERALKTI 1654
Score = 38 (18.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 348 WLH--DVKDVDLRLARLEH--LMNRRPELANSVLLRQNPHNVEQWH 389
WL DV L L+ E L+ R+P L ++V Q+P + + H
Sbjct: 680 WLQAGDVLHRVLCLSETEGRVLLCRKPALVSAVEGGQDPKSFSEIH 725
Score = 37 (18.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 352 VKDVDLRLARLEHLMNRR 369
+KD L AR HL N +
Sbjct: 386 LKDGTLAYARFNHLSNSK 403
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 120 (47.3 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 53/204 (25%), Positives = 87/204 (42%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + I YA +E H E
Sbjct: 308 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHS-IEGVR 366
Query: 570 RVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
VY R I K P V +W F ++ G ++ AR + + E A+ +
Sbjct: 367 HVYSRACTIHLPKKPMVHMLWAA----FEEQQGN--IDEARRILKTFEECILGLAM--VR 418
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A ++ ++A + + + Y I +AR +F V PK R++
Sbjct: 419 LRRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFYAIKLAR--HLFKVQKNLPKARKVL 476
Query: 684 EQAIESGLPDKDVKAMCLKYAELE 707
AIE DK+ + L E+E
Sbjct: 477 SDAIEI---DKENTKLYLNLLEME 497
Score = 99 (39.9 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 34/137 (24%), Positives = 62/137 (45%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN-LPITH 81
P+ W +Y + +R K+ +Y R L+A+P S LW Y+ + +K+ L
Sbjct: 86 PYCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSVDLWIHYI----NFLKDTLDPDD 141
Query: 82 PEYE-TLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH 137
PE T+ +E A++ T + R+W MY+ Q + + +DR L +P +
Sbjct: 142 PEANSTIRGAYEHAVLAAGTDFRSDRLWEMYINWEDEQGNLREVTSIYDRIL-GIPTQLY 200
Query: 138 DRIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 201 SHHFQRFKDHV-QNNLP 216
Score = 89 (36.4 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 38/174 (21%), Positives = 70/174 (40%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576
LW + EE GN++ R + + + + + + L H E+A R+ E V
Sbjct: 386 LWAAF---EEQQGNIDEARRILKTFEECILGLAMVRLRRVSLERRHGNMEEAERLLEEAV 442
Query: 577 KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636
+ K + L++ + + K L +AR++ +A+E + LYL ++E
Sbjct: 443 RNAKSVSESSFYAIKLARHLFKVQKN-LPKARKVLSDAIEIDKENT--KLYLNLLEMEYC 499
Query: 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI---FG--VPKTREIYEQ 685
L + + KAV + M + R E FG V K + Y++
Sbjct: 500 GDLTQNEENILSCFDKAVNGSLSIKMRVTFSQRKVEFLEDFGSDVNKLLDAYDE 553
Score = 70 (29.7 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T WV + E + AR FDK +Y + W ++A++E RH N K + E+
Sbjct: 56 TGWVYLLQYVEQENHLPAARKAFDKFF-THYP---YCYGYWKKYADLERRHDNIKQSDEV 111
Query: 484 MRR 486
RR
Sbjct: 112 YRR 114
Score = 67 (28.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164
W+ L+ + + + AR+ FD+ P W+ Y +E+ I+ S VYRR
Sbjct: 58 WVYLLQYVEQENHLPAARKAFDKFFTHYPYCYG--YWKKYAD-LERRHDNIKQSDEVYRR 114
Query: 165 YLKYDPSHIEDFIEFL 180
L+ P ++ +I ++
Sbjct: 115 GLQAIPLSVDLWIHYI 130
Score = 41 (19.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEI 298
W ++ I E+ +FE +++ DF + + Y + I
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHSI 362
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 182 (69.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 52/240 (21%), Positives = 112/240 (46%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G+ ES V+ER + ++
Sbjct: 1626 IEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPL-KV 1684
Query: 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611
++ A + + + +++A +Y R +K F+ K +W+ Y FV G+++ + +
Sbjct: 1685 FLHLADIYTKSEKYKEAGELYNRMLKRFRQE--KAVWIKY-GAFV--LGRSQAGASHRVL 1739
Query: 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671
+ A+E PA + +++A+LE G +RA +++ P ++ ++ +YI
Sbjct: 1740 QRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENTLSTYP--KRTDVWSVYIDMTI 1797
Query: 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731
+ R+I+E+ I L K +K +Y + EK G + + A ++ + +S
Sbjct: 1798 KHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKS 1857
Score = 148 (57.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 63/250 (25%), Positives = 114/250 (45%)
Query: 566 EDAFRVYERGVKIFKYPHVKD---IWVTYLSKFVKRYGKTKLERARELFENAVE-TAPAD 621
E A V ER +K + ++ +WV L+ YG E ++FE AV+ P
Sbjct: 1627 EKARAVAERALKTISFREEQEKLNVWVALLN-LENMYGSQ--ESLTKVFERAVQYNEPLK 1683
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK--- 678
L Y K E+ Y K A ++Y++ K EK ++I A + G +
Sbjct: 1684 VFLHLADIYTKSEK-Y---KEAGELYNRMLKRF-RQEKA----VWIKYGAFVLGRSQAGA 1734
Query: 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR 738
+ + ++A+E LP K+ + +K+A+LE LG+++RA+ I F + + T+ W+
Sbjct: 1735 SHRVLQRALEC-LPAKEHVDVIVKFAQLEFQLGDVERAKAI--FENTLSTYPKRTDVWSV 1791
Query: 739 WHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKD-KLKQAG 797
+ + + HG++ R++ +S + + F YL + Q + D + K K
Sbjct: 1792 YIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE 1851
Query: 798 VHEDEMAALE 807
E + +ALE
Sbjct: 1852 YVEAKSSALE 1861
Score = 45 (20.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1612 LWLQYMAFHLQATEIEKARAVAERALKTI 1640
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 110 (43.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 37/136 (27%), Positives = 61/136 (44%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K+ +Y R L+A+P S LW Y I L + L P
Sbjct: 123 PYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDP 179
Query: 83 EYE-TLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
E T+ TFE A++ T + ++W MY+ Q + + +DR L +P +
Sbjct: 180 ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRIL-GIPTQLYS 238
Query: 139 RIWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 239 HHFQRFKEHV-QNNLP 253
Score = 108 (43.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 51/206 (24%), Positives = 87/206 (42%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 345 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 403
Query: 570 RVYERG--VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R V + K P +W F ++ G + AR + E A+ +
Sbjct: 404 HVFSRACTVHLPKKPMAHMLWAA----FEEQQGN--INEARIILRTFEECVLGLAM--VR 455
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A + A + ++ + Y I +AR +F + PK+R++
Sbjct: 456 LRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLAR--HLFKIQKNLPKSRKVL 513
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKS 709
+AIE DK+ + L E+E S
Sbjct: 514 LEAIEK---DKENTKLYLNLLEMEYS 536
Score = 77 (32.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455
EGN + + + V T +P G WV + E + AR FDK ++Y
Sbjct: 71 EGNFPPEFEKFWKTVET-NPQDFTG-----WVYLLQYVEQENHLMAARKAFDKFF-IHYP 123
Query: 456 TVDHLASIWCEWAEMELRHKNFKGALELMRR 486
+ W ++A++E RH N K + E+ RR
Sbjct: 124 ---YCYGYWKKYADLEKRHDNIKQSDEVYRR 151
Score = 77 (32.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 76 NLPITHPEYETLNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRTFDRALCAL 132
+LP+T E FE+ T+ P+ W+ L+ + + + AR+ FD+
Sbjct: 64 DLPVTETE-GNFPPEFEKFWKTVETNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHY 122
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
P W+ Y +E+ I+ S VYRR L+ P ++ +I ++
Sbjct: 123 PYCYG--YWKKYAD-LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYI 167
Score = 60 (26.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/103 (27%), Positives = 43/103 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEAVRTVD-PMKAVGKPHTLWVAFAKLYETYKDIANARV 444
E W + K E + + + TV P K + H LW AF E +I AR+
Sbjct: 385 EFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPMA--HMLWAAFE---EQQGNINEARI 439
Query: 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487
I ++ + V LA + +E RH N + A L++ A
Sbjct: 440 I----LRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDA 478
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 123 (48.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 54/210 (25%), Positives = 92/210 (43%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 227 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 285
Query: 570 RVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R I K P V +W F ++ G + AR + E A+ +
Sbjct: 286 HVFSRACTIHLPKKPMVHMLWAA----FEEQQGN--INEARNILRTFEECVLGLAM--VR 337
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A ++ +A K ++ + Y I +AR +F + PK+R++
Sbjct: 338 LRRVSLERRHGNMEEAERLLQEAIKNAKSNNESSFYAIKLAR--HLFKIQKNLPKSRKVL 395
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKSLGEI 713
+AIE DK+ + L E+E S G++
Sbjct: 396 LEAIER---DKENTKLYLNLLEMEYS-GDL 421
Score = 92 (37.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 47 VIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYE-TLNNTFERALV---TMHKMP 102
++Y R L+A+P S LW Y I L + L PE T+ TFE A++ T +
Sbjct: 29 MVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDPETNSTVRGTFEHAVLAAGTDFRSD 85
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP 154
R+W MY+ Q + + +DR L +P + ++ + V Q +P
Sbjct: 86 RLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYSHHFQRFKDHV-QNNLP 135
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 107 (42.7 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 49/198 (24%), Positives = 82/198 (41%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG-- 575
W Y++ E G E ++ER + + I YA +E H E V+ R
Sbjct: 354 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVRHVFSRACT 412
Query: 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635
V + K P +W F ++ G + AR + E A+ + L+ LE
Sbjct: 413 VHLPKKPMAHMLWAA----FEEQQGN--INEARIILRTFEECVLGLAM--VRLRRVSLER 464
Query: 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIYEQAIESGL 691
+G + A + A K ++ + Y I +AR +F + PK+R++ +AIE
Sbjct: 465 RHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLAR--HLFKIQKNLPKSRKVLLEAIEK-- 520
Query: 692 PDKDVKAMCLKYAELEKS 709
DK+ + L E+E S
Sbjct: 521 -DKENTKLYLNLLEMEYS 537
Score = 105 (42.0 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 33/135 (24%), Positives = 59/135 (43%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + KR K+ +Y R L+A+P S LW Y+ ++ P
Sbjct: 124 PYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLE--PGDQE 181
Query: 83 EYETLNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139
T+ TFE A++ T + ++W MY+ Q + + +DR L +P +
Sbjct: 182 TNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRIL-GIPTQLYSH 240
Query: 140 IWEIYLRFVEQEGIP 154
++ + V Q +P
Sbjct: 241 HFQRFKEHV-QNNLP 254
Score = 83 (34.3 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 76 NLPITHPEYETLNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRTFDRALCAL 132
NLP+T E + FE+ T+ P+ W+ L+ + + + AR+ FD+
Sbjct: 65 NLPVTEAEGD-FPPEFEKFWKTVEMNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFVHY 123
Query: 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
P W+ Y +E+ I+ S VYRR L+ P ++ +I ++
Sbjct: 124 PYCYG--YWKKYAD-LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYI 168
Score = 74 (31.1 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483
T WV + E + AR FDK V+Y + W ++A++E RH N K + E+
Sbjct: 94 TGWVYLLQYVEQENHLMAARKAFDKFF-VHYP---YCYGYWKKYADLEKRHDNIKQSDEV 149
Query: 484 MRR 486
RR
Sbjct: 150 YRR 152
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 108 (43.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 51/206 (24%), Positives = 87/206 (42%)
Query: 511 LHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569
L K+ L+ W Y++ E G E ++ER + + I YA +E H E
Sbjct: 227 LEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHS-IEGVR 285
Query: 570 RVYERG--VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627
V+ R V + K P +W F ++ G + AR + E A+ +
Sbjct: 286 HVFSRACTVHLPKKPMAHMLWAA----FEEQQGN--INEARIILRTFEECVLGLAM--VR 337
Query: 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV----PKTREIY 683
L+ LE +G + A + A + ++ + Y I +AR +F + PK+R++
Sbjct: 338 LRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLAR--HLFKIQKNLPKSRKVL 395
Query: 684 EQAIESGLPDKDVKAMCLKYAELEKS 709
+AIE DK+ + L E+E S
Sbjct: 396 LEAIEK---DKENTKLYLNLLEMEYS 418
Score = 93 (37.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 47 VIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYE-TLNNTFERALV---TMHKMP 102
++Y R L+A+P S LW Y I L + L PE T+ TFE A++ T +
Sbjct: 29 MVYRRGLQAIPLSVDLWIHY-INFLK--ETLDPGDPETNSTIRGTFEHAVLAAGTDFRSD 85
Query: 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP 154
++W MY+ Q + + +DR L +P + ++ + V Q +P
Sbjct: 86 KLWEMYINWENEQGNLREVTAVYDRIL-GIPTQLYSHHFQRFKEHV-QNNLP 135
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 113 (44.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 64/257 (24%), Positives = 113/257 (43%)
Query: 469 EME-LRHKNFKGALELMRRATAEPSVEVRRRVAADG-NEPV-QMK-LHKS-LRLWTFYVD 523
E+E +RHK + E+ E S +R +G P +K L K+ L W Y+D
Sbjct: 380 EIENMRHKVIETRQEMFNHNEHEVS---KRWAFEEGIKRPYFHVKALEKTQLNNWREYLD 436
Query: 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFR-VYERG--VKIFK 580
E G E ++ER L + I YA LE Y +A R +Y++ V + K
Sbjct: 437 FELENGTPERVVVLFERCLIACALYEEFWIKYAKYLES--YSTEAVRHIYKKACTVHLPK 494
Query: 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640
P+V +W F ++ G ++ AR + + AVE + + + L+ LE +G
Sbjct: 495 KPNVHLLWAA----FEEQQGS--IDEARSILK-AVEVS-VPGLAMVRLRRVSLERRHGNM 546
Query: 641 KRAMKVYDQATKAVPNHEKLGMYEIYIARA-AEIF-GVPKTREIYEQAIESGLPDKDVKA 698
+ A + A N + Y + +AR ++ + + +++ +A+E D+
Sbjct: 547 EEAEALLQDAITNGRNSSESSFYSVKLARQLVKVQKSIGRAKKVLLEAVEK---DETNPK 603
Query: 699 MCLKYAELEKSLGEIDR 715
+ L ELE S G++ +
Sbjct: 604 LYLNLLELEYS-GDVQQ 619
Score = 94 (38.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 24 PFSLKLWWRYL-VAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
P+ W +Y + ++ + +Y R L+A+P S LW Y+ + +N +
Sbjct: 197 PYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYIT---FLRENQDTSDG 253
Query: 83 EYET-LNNTFERALV---TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ 136
E E+ + ++E A++ T + R+W Y+ T Q + +DR LC +P TQ
Sbjct: 254 EAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLC-IP-TQ 309
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 21/102 (20%), Positives = 42/102 (41%)
Query: 82 PEYETLNNTFERALVTMHKMPRI---WIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138
P+ L +ER + P W+ L+ + + + +R+ FD P
Sbjct: 143 PQEPELPTEYERLSKVVEDNPEDFNGWVYLLQYVEQENHLLGSRKAFDAFFLHYPYCYG- 201
Query: 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180
W+ Y + G I+ + VYRR L+ P ++ ++ ++
Sbjct: 202 -YWKKYADIERKHGY-IQMADEVYRRGLQAIPLSVDLWLHYI 241
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 27/118 (22%), Positives = 49/118 (41%)
Query: 57 PGSYKLWHAYL-IERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETL--- 112
P Y W Y IER H + + + R L + +W+ Y+ L
Sbjct: 197 PYCYGYWKKYADIER---------KHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLREN 247
Query: 113 --TSQ-KFITKARRTFDRALCALPVT-QHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166
TS + ++ R +++ A+ A + DR+WE Y+ + ++G + +Y R L
Sbjct: 248 QDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQG-KLANVTAIYDRLL 304
>FB|FBgn0003559 [details] [associations]
symbol:su(f) "suppressor of forked" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005848
"mRNA cleavage stimulating factor complex" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0016070 "RNA metabolic process" evidence=NAS]
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
EMBL:CM000460 GO:GO:0006379 eggNOG:COG5107 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:X62679 EMBL:BT012671
EMBL:BT021384 EMBL:AY102664 PIR:A46389 PIR:B46389
RefSeq:NP_001015240.1 RefSeq:NP_001015241.3 RefSeq:NP_001104479.1
RefSeq:NP_001104480.2 UniGene:Dm.8029 ProteinModelPortal:P25991
SMR:P25991 DIP:DIP-22591N IntAct:P25991 MINT:MINT-312459
STRING:P25991 PaxDb:P25991 EnsemblMetazoa:FBtr0113732
EnsemblMetazoa:FBtr0306544 GeneID:3354994 KEGG:dme:Dmel_CG17170
CTD:252748 FlyBase:FBgn0003559 InParanoid:P25991 OrthoDB:EOG4V15FR
PhylomeDB:P25991 GenomeRNAi:3354994 NextBio:850013 Bgee:P25991
GO:GO:0005848 Uniprot:P25991
Length = 765
Score = 118 (46.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 43/172 (25%), Positives = 74/172 (43%)
Query: 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659
G+ K E+ ++ ++ D +Y+QY K K A ++ +A + V +
Sbjct: 385 GRLKYEKVHTMYNKLLQLPDIDPTL-VYVQYMKFARRAEGIKSARSIFKKAREDVRSR-- 441
Query: 660 LGMYEIYIARAAEIFGVPKTREIYEQAIESGLP---DKDVKAMCLKYAELEKSLGEIDRA 716
Y I++A A + K +EI + E GL MC Y + L E +
Sbjct: 442 ---YHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMC--YIDYLSHLNEDNNT 496
Query: 717 RGIY--VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 766
R ++ V +S P E WNR+ EFE N G+ +++++R SA +
Sbjct: 497 RVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGD---LSSIVKVERRRSAVF 545
Score = 82 (33.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 66 YLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTF 125
Y IE S++ T P +E + + +E + R W +Y+E ++ + + F
Sbjct: 31 YDIESWSVMIREAQTRPIHE-VRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLF 89
Query: 126 DRALCALPVTQHDRIWEIYLRFVEQ 150
R C + + D +W++YL +V++
Sbjct: 90 QR--CLVKILNID-LWKLYLTYVKE 111
Score = 80 (33.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P+ ++ W + + P + +YE + P + + W Y+ + +
Sbjct: 30 PYDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWKLYI--------EMEMRSRY 81
Query: 84 YETLNNTFERALVTMHKMPRIWIMYL----ET---LTSQKFITKARRTFDRALCALPVTQ 136
YE + F+R LV + + +W +YL ET L++ K K + +D AL + +
Sbjct: 82 YERVEKLFQRCLVKILNID-LWKLYLTYVKETKSGLSTHK--EKMAQAYDFALEKIGMDL 138
Query: 137 HD-RIWEIYLRFV 148
H IW+ Y+ F+
Sbjct: 139 HSFSIWQDYIYFL 151
Score = 65 (27.9 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 44/207 (21%), Positives = 89/207 (42%)
Query: 421 KPHTL--WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478
+P+ + W + +T + I R +++ V V + T A W + EME+R + ++
Sbjct: 29 RPYDIESWSVMIREAQT-RPIHEVRSLYESLVNV-FPTT---ARYWKLYIEMEMRSRYYE 83
Query: 479 GALELMRRATAEP-SVEVRRRVAADGNEPVQ-MKLHKSLRLWTFYVDLEESLGNLESTRA 536
+L +R + ++++ + E + HK + LE+ +L S
Sbjct: 84 RVEKLFQRCLVKILNIDLWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFSI 143
Query: 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596
+ I LR + + NYA E++ RVY++ V + ++ +W Y++ F
Sbjct: 144 WQDYIYFLRGV--EAVGNYA----ENQKITAVRRVYQKAV-VTPIVGIEQLWKDYIA-FE 195
Query: 597 KRYG-----KTKLERARELFENAVETA 618
+ K LER+++ + NA A
Sbjct: 196 QNINPIISEKMSLERSKD-YMNARRVA 221
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 160 (61.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 52/242 (21%), Positives = 107/242 (44%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G E+ V+ER + P
Sbjct: 1605 IEKARAVAERALKTICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYN--EPLK 1662
Query: 552 IINYA--LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609
+ + + KY + A +Y ++ F+ K +W+ Y S F+ + G+T E
Sbjct: 1663 VFQHLCDIYASSEKY-KQAEELYHTMLRRFRQE--KSVWLKYAS-FLLKQGQT--EATHR 1716
Query: 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669
L E A++ P + ++A+LE +G + A +++ + P ++ ++ IY+
Sbjct: 1717 LLERALKALPTKEHVDVISRFAQLEFRFGDPEHAKALFESTLNSYP--KRTDIWSIYMDI 1774
Query: 670 AAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADP 729
+ + R+I+E+ I L K +K +Y + EK G + + A ++ +
Sbjct: 1775 MIKQGSQKEIRDIFERVIHLNLAPKKMKFFFKRYLDYEKKYGTTETVMAVKTAALEYVEA 1834
Query: 730 RS 731
+S
Sbjct: 1835 KS 1836
Score = 40 (19.1 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 116 KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED 175
K ++K R++F A RI + Y E + ++ + + R+L+Y+ H D
Sbjct: 403 KHLSKTRKSFKPAAFKAGCKHKCRIID-YSLMDEMCIVSLKHQI-IEARFLRYEDIHTGD 460
Query: 176 FIEFLVKS 183
++ V S
Sbjct: 461 VMQGKVLS 468
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 77 LPITHPEY 84
LPITHP +
Sbjct: 1108 LPITHPHF 1115
>WB|WBGene00002850 [details] [associations]
symbol:let-716 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
Uniprot:Q18038
Length = 1743
Score = 157 (60.3 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 57/257 (22%), Positives = 120/257 (46%)
Query: 481 LELMRRATAEPSVEVRRRVAADGNEPVQ-MKLHKSLRLWTFYVDLEESLGNLESTRAVYE 539
+E M + + R+ A + + + + L++WT Y+++E + G+ + + V+E
Sbjct: 1490 IEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWTAYLNMEVAYGDAATVQKVFE 1549
Query: 540 RILDLRIATPQIIINYALLLEEHKYFE---DAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596
R + A + + L + ++ FE +A ++ E+ VK F+ + ++W T L++ +
Sbjct: 1550 RAC--KNANAYTV--HKTLSKIYQKFEKNAEATQILEQMVKKFRANQL-EVW-TLLAEHL 1603
Query: 597 KRYGKTKLERARELFENAVETAP-ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655
K AREL A+++AP A L ++A+LE +G A+R + + A P
Sbjct: 1604 MTQNDQKA--ARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAERGRTLLEGLVTAHP 1661
Query: 656 NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR 715
+K ++ +Y + G+ R++ E+A G ++ + K+ E+E G+
Sbjct: 1662 --KKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKWLEMESKHGDAAA 1719
Query: 716 ARGIYVFASQFADPRSD 732
+ A +F +D
Sbjct: 1720 VELVKAKAEKFLQAVAD 1736
Score = 41 (19.5 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 149 EQEGIP-IETSLRVYRRYLKYDPSHIEDFIE----FLVKSKLW--QEAAERLASVLN 198
++E I IE S + R ++ DP+ ++IE F+ KS L ++ AE +N
Sbjct: 1461 DEENIELIEKSEEDHSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAIN 1517
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 109 (43.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 57/251 (22%), Positives = 99/251 (39%)
Query: 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH-KYFEDAFRVYERGVKIF 579
Y+ E++ G+ +A+YER + + + I+Y + L++ K + Y R +
Sbjct: 300 YIKFEKTSGDPTRVQAIYERAVAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATR-- 357
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTK-----LERAREL----FENAVET--APADAVKPLYL 628
P D+W YL + K E++ + FE ++ D ++ L
Sbjct: 358 SCPWTGDLWARYLLALERGSASEKEIYDVFEKSLQCTFSSFEEYLDLYLTRVDGLRRRML 417
Query: 629 QYAKLEE-DYGLAKRAMK-VYDQATKAVPNHEKLGMYEIYIARAAEIFG--VPKTREIYE 684
LE DY L + + D T + N + L Y A G + R +++
Sbjct: 418 STRMLEALDYSLIRETFQQASDYLTPHMQNTDSLLHLHTYWANLELNIGKDLAGARGVWD 477
Query: 685 QAIE-SGLPDKDVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNRWHE 741
++ SG + A Y ++E LG I AR IY + +F D + W
Sbjct: 478 SFLKKSG----GMLAAWHAYIDMEVHLGHIKEARSIYRRCYTRKF-DGTGSEDICKGWLR 532
Query: 742 FEVNHGNEDTF 752
FE HG+ + F
Sbjct: 533 FEREHGDLEHF 543
Score = 83 (34.3 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 44/189 (23%), Positives = 81/189 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKAL-PGSYKLWHAYLIERLSIVKNLPITH 81
NP++ + +Y+ R+ ++ A+ A+ P S LW + + S+ + +
Sbjct: 62 NPYNYDAYVQYIKLLRKTANLEKLRQAREAMSAIFPLSPSLWLEWARDEASLAASENV-- 119
Query: 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTS---------QKFITKARRTFDRALCA- 131
PE L +ER L + ++ +W YL + + I+K R F+RA+ A
Sbjct: 120 PEIVML---YERGL-SDYQSVSLWCDYLSFMLEFDPSVRGYPSEGISKMRSLFERAIPAA 175
Query: 132 -LPVTQHDRIWEIYLRF------------VEQEGIPIETSLRVYRRYLKYDPSHIEDFIE 178
VT+ +RIWE Y F +E+ I+ ++ R+L P +E+
Sbjct: 176 GFHVTEGNRIWEGYREFEQGVLATIDEADIEERNKQIQRIRSIFHRHLSV-P--LENLSS 232
Query: 179 FLVKSKLWQ 187
L+ K W+
Sbjct: 233 TLIAYKTWE 241
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 124 (48.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 82/375 (21%), Positives = 156/375 (41%)
Query: 350 HDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA 409
H VK + L A LE + + + L P +V+ W V++ E + +L
Sbjct: 366 HSVK-IWLYAANLEKQLKMKKRVLRRAL-EFIPTSVKLWKEAVELEEPEDARILLG---- 419
Query: 410 VRTVDPMKAVGKPHTLWVAFAKL--YETYKDIAN-ARVIFDKAVQVNYKTVDHLASIWCE 466
R V+ V LW+A A L YE +++ N AR + ++ S
Sbjct: 420 -RAVE---CVPDNIDLWLALANLETYEKAREVLNKARQALPSSSEIWISAAQLEESQGKN 475
Query: 467 WAEMELRHKNFK----GALELMRR----ATAEPSVEVRRRVAADG--NEPVQMKLHKSLR 516
++ K K G + +M R A AE S + + V E + M + R
Sbjct: 476 DNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEKNQYYVTCQAIIYETIGMGIEDDDR 535
Query: 517 LWTFYVDLEESL--GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER 574
+ +D EE L G++++ A+Y IL + + + A L ++H E + E+
Sbjct: 536 KRIWVIDAEECLSRGSIKTANAIYAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQTLEK 595
Query: 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634
+ K P +++W+ Y + ++ + +ARE+ A + P + +++ K+E
Sbjct: 596 ATQ--KCPQYENLWLMYAKE---KWISGDVAKAREILAQAFKFNPGS--ENIWVAAVKIE 648
Query: 635 EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR-EIYEQAIESGLPD 693
+ + A + +A + + E++ M + R E+ G K + EQ ++ P+
Sbjct: 649 SEMNELRAARNLLKKA-REIAGTERIWMKSALLER--ELGGDQKLELSLIEQGLQK-YPN 704
Query: 694 KDVKAMCLKYAELEK 708
K +K A+LE+
Sbjct: 705 S-FKLWLMK-AQLEE 717
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLW 63
P S+K+W +++ KKR + RAL+ +P S KLW
Sbjct: 365 PHSVKIWLYAANLEKQLKMKKR--VLRRALEFIPTSVKLW 402
>UNIPROTKB|A5PJN6 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005730 GO:GO:0006396 Gene3D:1.25.40.10
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640 CTD:55813
HOGENOM:HOG000285956 HOVERGEN:HBG051886 OMA:EKEQESC
OrthoDB:EOG4RBQJ7 GeneTree:ENSGT00390000016493 EMBL:DAAA02048528
EMBL:BC142183 IPI:IPI00710076 RefSeq:NP_001092610.1
UniGene:Bt.20427 STRING:A5PJN6 Ensembl:ENSBTAT00000020740
GeneID:614984 KEGG:bta:614984 InParanoid:A5PJN6 NextBio:20899389
Uniprot:A5PJN6
Length = 598
Score = 134 (52.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 47/217 (21%), Positives = 96/217 (44%)
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
LE T + + +L++ + LL + +++ V + GVK+FK ++W
Sbjct: 352 LERTMVAFWKAHELKLLPELQYRQLSKLLLHRQLLKESLEVADAGVKLFKKS--VEMWQV 409
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
L + ++ + FE A E PL+L +A+ ED G + +Y +A
Sbjct: 410 KLEALIT----SESHEMSKGFEQAFEYLKPQICLPLWLTWAQWSEDAGKQEETEAIYKRA 465
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710
+P + + + E+Y+ A G K R++++ E+ D +++ E E+
Sbjct: 466 IFGLPGADSVPVKEMYLNWAYRSGGYKKARDVFKSLQENRPFSVDFFRKMIQF-EKEQES 524
Query: 711 GEIDRARGIYVFA-SQFADPRSDTEFWNRWHEFEVNH 746
+++ R Y A +F +D++ W + + E+NH
Sbjct: 525 CKMENLREYYERALREFGT--NDSDLWMDYIKEELNH 559
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 52/266 (19%), Positives = 110/266 (41%)
Query: 45 RFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRI 104
R+V YE L L + Y ++ I PI H + + F RA + R+
Sbjct: 56 RYVQYEIHLLDLIEKRRARVGYTFKKDEIED--PIIH----RIQSVFRRASIKWKDDVRL 109
Query: 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164
W+ ++ + F +L A + +W + ++ ++ E++ +++ R
Sbjct: 110 WLSFIAFCRKWASNVHLSKIFS-SLLAFH-SNKPGLWILAAKWELEDRFSSESARQLFLR 167
Query: 165 YLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIK-GKTKHRLWLELCDLLTT 223
L++ P + + E+ + +L AE+L + + ++ G +H E ++LT
Sbjct: 168 ALRFHPRCPKLYEEYF-RMELMH--AEKLRKEKQEFEKANMDVGNLEHA---E--EILTG 219
Query: 224 HATEISGLNVDAIIRGGIRKFTDE---VGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280
I N ++I+ KF + RL+ D ++RE++ + + + +T
Sbjct: 220 ELARIIYKNSTSVIKSA--KFHVSLLSIARLFDFAKD--LQREIYNDLKALHADDPVTWD 275
Query: 281 TVRDFSVIFDSYSQFEEIMVSAKMAK 306
V ++ +S Q E + + K AK
Sbjct: 276 YVARQELVIES--QPVEELPATKQAK 299
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 20/104 (19%), Positives = 45/104 (43%)
Query: 66 YLIERLSIVKNLPITHPEYET-LNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRT 124
Y I+R S++K+ I + +YE L + E+ + R+ + + I + +
Sbjct: 42 YRIQRRSLLKDDFIRYVQYEIHLLDLIEK------RRARVGYTFKKDEIEDPIIHRIQSV 95
Query: 125 FDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168
F RA ++ R+W ++ F + + S +++ L +
Sbjct: 96 FRRA--SIKWKDDVRLWLSFIAFCRKWASNVHLS-KIFSSLLAF 136
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 131 (51.2 bits), Expect = 0.00015, P = 0.00015
Identities = 81/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 294 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 349
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 350 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 408
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 409 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 456
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 457 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 514
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + I I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 515 EECDKAGSVATCQAIMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 574
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 575 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 602
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 50/185 (27%), Positives = 85/185 (45%)
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639
K PH +W+ LS+ ++ G+ L RAR + E + P +A L+L+ +LE GL
Sbjct: 742 KCPHSIPLWLL-LSRLEEKVGQ--LTRARAILEKSRLKNPKNA--DLWLESVRLEYRAGL 796
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699
A + +A + PN L I++ + KT+ + A++ D V
Sbjct: 797 KNIANTLMAKALQECPNSGILWSEAIFLEARPQ----RKTKSV--DALKKCEHDPHV--- 847
Query: 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIK 759
L A+L S +I +AR + + D W +++FE+ HG E+ +E +R K
Sbjct: 848 LLAVAKLFWSERKITKAREWFHRTVKIDSDLGDA--WAFFYKFELQHGTEEQ-QEEVR-K 903
Query: 760 RSVSA 764
R +A
Sbjct: 904 RCENA 908
Score = 82 (33.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 53/203 (26%), Positives = 86/203 (42%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412
K V LR A E R L ++L R H + V G +K + A R+
Sbjct: 578 KSVWLRAAYFEKNHGTRESL-EALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARS 633
Query: 413 VDPMKAVGKPHT--LWVAFAKL------YETYKDI-ANARV------IFDKAVQVNYKTV 457
+ + P++ +W+A KL YE + + A AR +F K+V++ + +
Sbjct: 634 ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEW-VL 692
Query: 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517
++A+ E E LRH L +M+ E E+ R N+ ++ H S+ L
Sbjct: 693 GNIAAAQ-ELCEEALRHYEDFPKLWMMK-GQIEEQKELVERAREAYNQGLKKCPH-SIPL 749
Query: 518 WTFYVDLEESLGNLESTRAVYER 540
W LEE +G L RA+ E+
Sbjct: 750 WLLLSRLEEKVGQLTRARAILEK 772
Score = 59 (25.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S++LW + E P R ++ RA++ P S +LW A + RL +N
Sbjct: 405 PNSVRLW--KAAVELEEPEDARIML-SRAVECCPTSVELWLA--LARLETYENAR----- 454
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ LN E H IWI + + + DRA+ +L
Sbjct: 455 -KVLNKARENIPTDRH----IWITAAKLEEANGNTQMVEKIIDRAITSL 498
Score = 54 (24.1 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++++ R + + KKR + +AL+ +P S +LW A
Sbjct: 374 PQSVRIYIRAAELETDIRAKKR--VLRKALEHVPNSVRLWKA 413
Score = 47 (21.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 127 RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLW 186
+A+ A V + IY+R E +ET +R +R L+ H+ + + +LW
Sbjct: 363 KAVVAQAVRHLPQSVRIYIRAAE-----LETDIRAKKRVLRKALEHVPNSV------RLW 411
Query: 187 QEAAE 191
+ A E
Sbjct: 412 KAAVE 416
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 118 (46.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 60/262 (22%), Positives = 116/262 (44%)
Query: 415 PMKAVGKPHTLWVAFAKLYETYK------DIANA--RVIFDKAVQVNYKTVDHLASIWCE 466
P K T WVA+ K K D A++ R+I+ A + + H +W +
Sbjct: 214 PPTGTSKEETQWVAWKKFLSFEKGNPQRIDTASSTKRIIY--AYEQCLMCLYHYPDVWYD 271
Query: 467 WAEMELRHKNFKGALELMRRAT-AEPSVEVRRRVAADGNEP---VQM--KLHKS-LRLWT 519
+AE ++ + A+++ +RA A P E+ + A+ E +Q KL+++ L T
Sbjct: 272 YAEWHVKSGSTDAAIKVFQRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGAST 331
Query: 520 ---FYVDLEESLGNLESTRAVYERILDLRIA---TPQIIINYALLLE-EHKYFEDAFRVY 572
++ L E A + LD R + T + I +A + K + A ++
Sbjct: 332 NSLAHIQYLRFLRRAEGVEAARKYFLDARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIF 391
Query: 573 ERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632
E G+K++ + +++ + F+ R + RA LFE A+ T P + ++ ++ +
Sbjct: 392 EEGLKLYMS---EPVYILKYADFLTRLNDDRNIRA--LFERALSTLPVEDSAEVWKRFIQ 446
Query: 633 LEEDYGLAKRAMKVYDQATKAV 654
E+ YG +KV + +A+
Sbjct: 447 FEQTYGDLASILKVEQRMKEAL 468
Score = 111 (44.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 56/255 (21%), Positives = 107/255 (41%)
Query: 518 WTFYVDLEES----LGNLESTRAV---YERILDLRIATPQIIINYALLLEEHKYFEDAFR 570
W ++ E+ + ST+ + YE+ L P + +YA + + A +
Sbjct: 228 WKKFLSFEKGNPQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIK 287
Query: 571 VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630
V++R +K P + + + R G ++ A++L+EN + + YL++
Sbjct: 288 VFQRALKAI--PDSEMLKYAFAEMEESR-GA--IQSAKKLYENILGASTNSLAHIQYLRF 342
Query: 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG 690
+ E G+ + A K + A K+ P+ Y +YIA A F + K ++ E G
Sbjct: 343 LRRAE--GV-EAARKYFLDARKS-PSCT----YHVYIAFATMAFCIDKEPKVAHNIFEEG 394
Query: 691 LP-DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNE 749
L LKYA+ L + R ++ A E W R+ +FE +G+
Sbjct: 395 LKLYMSEPVYILKYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDL 454
Query: 750 DTFREM-LRIKRSVS 763
+ ++ R+K ++S
Sbjct: 455 ASILKVEQRMKEALS 469
Score = 71 (30.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 40/157 (25%), Positives = 64/157 (40%)
Query: 35 VAKR--EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92
+AKR +P + IYE+ L P S + W Y +E V N T F
Sbjct: 13 LAKRALHSPIAQATPIYEQLLSLYPTSARFWKQY-VEAQMAVNNDDAT-------KQIFS 64
Query: 93 RALVTMHKMPRIW---IMYLETLTSQKFITKARRT---FDRALCALPVT-QHDRIWEIYL 145
R L+T ++P +W I ++ + +K T F+ L + IW Y+
Sbjct: 65 RCLLTCLQVP-LWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWTEYI 123
Query: 146 RFVEQ-------EGIPIETSLR-VYRRYLKYDPSHIE 174
F++ E + +T+LR VY R + H+E
Sbjct: 124 AFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVE 160
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 97 (39.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 44/202 (21%), Positives = 77/202 (38%)
Query: 563 KYFED-AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621
K F D A +YER + +K + Y S + K E+ ++ + D
Sbjct: 318 KLFSDEAANIYERAIGTL----LKKNMLLYFSFADYEESRMKHEKVHSIYNRLLAIEDID 373
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
+Y+QY K K ++ +A + P + +Y+ A + K +
Sbjct: 374 PTL-VYIQYMKFARRAEGIKSGRSIFKKARED-PRTR----HHVYVTAALMEYYCSKDKS 427
Query: 682 IYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNR 738
+ + E GL D+ L Y + L E + R ++ V S P E W R
Sbjct: 428 VAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEKSGEIWAR 487
Query: 739 WHEFEVNHGNEDTFREMLRIKR 760
+ FE N G+ +L+++R
Sbjct: 488 FLAFESNIGD---LASILKVER 506
Score = 92 (37.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 28 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 80
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 81 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMPQAYDFALDKIGMEIM 138
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 139 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 174
Score = 91 (37.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 62 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 115
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 116 PSYKEKMPQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 175
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI + + ++
Sbjct: 176 -CVNPMINIEQLWRDYSKY--EEGINVHLAKKM 205
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/190 (21%), Positives = 70/190 (36%)
Query: 563 KYFED-AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621
K F D A +YER + +K + Y + + K E+ ++ + D
Sbjct: 318 KLFSDEAANIYERAISTL----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 373
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
+Y+QY K K ++ +A + + +Y+ A + K +
Sbjct: 374 PTL-VYIQYMKFARRAEGIKSGRMIFKKAREDTRTR-----HHVYVTAALMEYYCSKDKS 427
Query: 682 IYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNR 738
+ + E GL D+ L Y + L E + R ++ V S P E W R
Sbjct: 428 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 487
Query: 739 WHEFEVNHGN 748
+ FE N G+
Sbjct: 488 FLAFESNIGD 497
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 28 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 80
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 81 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 138
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 139 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 174
Score = 91 (37.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 62 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 115
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 116 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 175
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI I + ++
Sbjct: 176 -CVNPMINIEQLWRDYNKY--EEGINIHLAKKM 205
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/190 (21%), Positives = 70/190 (36%)
Query: 563 KYFED-AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621
K F D A +YER + +K + Y + + K E+ ++ + D
Sbjct: 318 KLFSDEAANIYERAISTL----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 373
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
+Y+QY K K ++ +A + + +Y+ A + K +
Sbjct: 374 PTL-VYIQYMKFARRAEGIKSGRMIFKKAREDTRTR-----HHVYVTAALMEYYCSKDKS 427
Query: 682 IYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNR 738
+ + E GL D+ L Y + L E + R ++ V S P E W R
Sbjct: 428 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 487
Query: 739 WHEFEVNHGN 748
+ FE N G+
Sbjct: 488 FLAFESNIGD 497
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 28 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 80
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 81 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 138
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 139 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 174
Score = 91 (37.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 62 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 115
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 116 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 175
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI I + ++
Sbjct: 176 -CVNPMINIEQLWRDYNKY--EEGINIHLAKKM 205
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/190 (21%), Positives = 70/190 (36%)
Query: 563 KYFED-AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621
K F D A +YER + +K + Y + + K E+ ++ + D
Sbjct: 318 KLFSDEAANIYERAISTL----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 373
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
+Y+QY K K ++ +A + + +Y+ A + K +
Sbjct: 374 PTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYCSKDKS 427
Query: 682 IYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNR 738
+ + E GL D+ L Y + L E + R ++ V S P E W R
Sbjct: 428 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 487
Query: 739 WHEFEVNHGN 748
+ FE N G+
Sbjct: 488 FLAFESNIGD 497
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 28 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 80
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 81 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 138
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 139 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 174
Score = 91 (37.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 62 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 115
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 116 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 175
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI I + ++
Sbjct: 176 -CVNPMINIEQLWRDYNKY--EEGINIHLAKKM 205
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/190 (21%), Positives = 70/190 (36%)
Query: 563 KYFED-AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621
K F D A +YER + +K + Y + + K E+ ++ + D
Sbjct: 319 KLFSDEAANIYERAISTL----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID 374
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681
+Y+QY K K ++ +A + + +Y+ A + K +
Sbjct: 375 PTL-VYIQYMKFARRAEGIKSGRMIFKKAREDTRTR-----HHVYVTAALMEYYCSKDKS 428
Query: 682 IYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTEFWNR 738
+ + E GL D+ L Y + L E + R ++ V S P E W R
Sbjct: 429 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 488
Query: 739 WHEFEVNHGN 748
+ FE N G+
Sbjct: 489 FLAFESNIGD 498
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 29 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 81
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 82 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 139
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 140 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 175
Score = 91 (37.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 63 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 116
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 117 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 176
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI I + ++
Sbjct: 177 -CVNPMINIEQLWRDYNKY--EEGINIHLAKKM 206
>FB|FBgn0036828 [details] [associations]
symbol:CG6841 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005684 "U2-type spliceosomal complex" evidence=ISS]
[GO:0005682 "U5 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IC] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
EMBL:AE014296 GO:GO:0022008 GO:GO:0005682 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 FlyBase:FBgn0036828 EMBL:BT021415
RefSeq:NP_649073.1 UniGene:Dm.11665 SMR:Q9VVU6 MINT:MINT-316737
STRING:Q9VVU6 EnsemblMetazoa:FBtr0075068 GeneID:40064
KEGG:dme:Dmel_CG6841 UCSC:CG6841-RA InParanoid:Q9VVU6
GenomeRNAi:40064 NextBio:816818 Uniprot:Q9VVU6
Length = 931
Score = 111 (44.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 44/156 (28%), Positives = 68/156 (43%)
Query: 605 ERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMY 663
E AR++ A E P D + ++ AKLEE G K+ D++ T N ++
Sbjct: 437 ENARKVLNKARENIPTD--RQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRD 494
Query: 664 EIYI-ARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYV 721
+ + A AE G V + I + I G+ ++D K + AE + AR +Y
Sbjct: 495 QWFQEAIEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYA 554
Query: 722 FASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
A Q P S W R FE NHG ++ +L+
Sbjct: 555 HALQIF-P-SKKSIWLRAAYFEKNHGTRESLEALLQ 588
Score = 79 (32.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 60/280 (21%), Positives = 119/280 (42%)
Query: 330 LDVNLSMAEFVKKVLNGFWLHDVKDVDLR-LARLEH-LMN-RRPELANSVLLRQ--NPHN 384
LD + +A V V L D+DLR + + + LMN + ++++SV + +P
Sbjct: 203 LDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKLSQVSDSVTGQTVVDPKG 262
Query: 385 -VEQWHRRVKIFEG--NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIAN 441
+ + + G N K+ ++VR +P P W+A A+L E +
Sbjct: 263 YLTDLQSMIPTYGGDINDIKKARLLLKSVRETNP----NHPPA-WIASARLEEVTGKVQM 317
Query: 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEME----------LRHKNFKGALEL-MRRATAE 490
AR + + ++N ++ D +W E A ++ ++ ++ + ++ A E
Sbjct: 318 ARNLIMRGCEMNIQSED----LWLEAARLQPPDTAKAVIAQAARHIPTSVRIWIKAADLE 373
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+ +RRV E + S+RLW V+LE N + R + R ++ + +
Sbjct: 374 SETKAKRRVFRKALEHIP----NSVRLWKAAVELE----NPDDARILLSRAVECCNTSVE 425
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ + A L + +E+A +V + + P + IW T
Sbjct: 426 LWLALARL----ETYENARKVLNKARE--NIPTDRQIWTT 459
Score = 68 (29.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S+++W + + E K+R ++ +AL+ +P S +LW A +E + +P+
Sbjct: 360 PTSVRIWIKAADLESETKAKRR--VFRKALEHIPNSVRLWKA-AVE---------LENPD 407
Query: 84 YETLNNTFERALVTMHKMPRIWIMY--LETL-TSQKFITKARRTF--DRAL 129
+ RA+ + +W+ LET ++K + KAR DR +
Sbjct: 408 DARI--LLSRAVECCNTSVELWLALARLETYENARKVLNKARENIPTDRQI 456
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 131 (51.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 112/514 (21%), Positives = 208/514 (40%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIM-----VSAKMA 305
LW +LA R E +E A+ + + T+ T + ++ + ++ EE V MA
Sbjct: 406 LWLALA----RLETYENAKKVLNKARQTIRTSHE---VWIAAARLEEQQGNVSRVEKIMA 458
Query: 306 K--PDLSVXXXXXXXXXXXXXXXXIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLE 363
+ +L + + A+ + G L + D L +
Sbjct: 459 RGVSELQATGGMLQRDQWLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQ 518
Query: 364 HLMNRRP-ELANSVL---LRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTV--DPMK 417
+ R+ + A +V LR P + + W R V++ +++ TE+V ++ ++
Sbjct: 519 SFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVEL------EKLYGTTESVCSILEKAVE 572
Query: 418 AVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477
+ K LW+ +AK + DIA AR I +A + N + + IW +E +
Sbjct: 573 SCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEE----IWLAAVRIEFVNNEN 628
Query: 478 KGALELMRRATAEPSVE-------VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530
+ A +L+ RA E E R+ + + +Q+ L +L+++ Y L G
Sbjct: 629 ERARKLLARARIESGTERIWTKSISLERILDEKDRALQL-LENALKIYPHYDKLYMMKGQ 687
Query: 531 LESTRAVYERILDLRIA----TPQIIINYALL--LEEHKYFEDAFRVYERGVKIFKYPHV 584
+ + E D +A P I + LL LEE + A V++R K+ K P
Sbjct: 688 IFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVIRARVVFDRA-KV-KNPKN 745
Query: 585 KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644
+ +W+ L K R G + + R A++ P+ + L+ + LE A+R
Sbjct: 746 EFLWLE-LIKMELRAGN--ISQVRAALAKALQECPSSGL--LWTEAIWLEPR---AQRKT 797
Query: 645 KVYDQATKAVPNHEKLGMYE--IYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK 702
+ D K N L +++ + A+ K R + +A+++ + DV K
Sbjct: 798 RATDALRKCEGNAHLLCTIARMLWLEKKAD-----KARSWFLKAVKADQDNGDVWCWFYK 852
Query: 703 YAELEKSLGEIDRARGIYVFASQFADPRSDTEFW 736
Y+ LE G D+ + + + + ADP FW
Sbjct: 853 YS-LEA--GNEDQQKEVLT-SFETADPHHGY-FW 881
Score = 58 (25.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 28/104 (26%), Positives = 45/104 (43%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S+ LW + +A KKR + ++AL+ P S LW + NL E
Sbjct: 339 PKSVTLWLEAEKLENQAQHKKRII--KKALEFNPTSVSLWKEAV--------NL---EEE 385
Query: 84 YETLNNTFERALVTMHKMPRIWIMY--LETL-TSQKFITKARRT 124
+ RA+ + +W+ LET ++K + KAR+T
Sbjct: 386 VDNARILLARAVELIPMSIDLWLALARLETYENAKKVLNKARQT 429
Score = 48 (22.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/136 (23%), Positives = 55/136 (40%)
Query: 33 YLVAKREAPFKKRFVIYERALKALPGSYKLW-HAYLIERLS-----IVKNLPITHP---- 82
+L A R P + VI A+K LP S LW A +E + I+K +P
Sbjct: 315 WLEAIRLHPAAEAKVIIANAVKKLPKSVTLWLEAEKLENQAQHKKRIIKKALEFNPTSVS 374
Query: 83 ---EYETLNNTFERALVTMHKMPRIWIMYLE---TLTSQKFITKARRTFDRALCALPVTQ 136
E L + A + + + + M ++ L + A++ ++A + T
Sbjct: 375 LWKEAVNLEEEVDNARILLARAVELIPMSIDLWLALARLETYENAKKVLNKARQTIR-TS 433
Query: 137 HDRIWEIYLRFVEQEG 152
H+ +W R EQ+G
Sbjct: 434 HE-VWIAAARLEEQQG 448
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 80/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 290 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 404
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 405 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 452
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 453 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 510
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + + I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 511 EECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 570
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 571 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 598
Score = 97 (39.2 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 46/178 (25%), Positives = 79/178 (44%)
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639
K PH +W+ LS+ ++ G+ L RAR + E + P + L+L+ +LE GL
Sbjct: 738 KCPHSTPLWLL-LSRLEEKVGQ--LTRARAILEKSRLKNPKNP--GLWLESVRLEYRAGL 792
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699
A + +A + PN L I++ + KT+ + A++ D V
Sbjct: 793 KNIASTLMAKALQECPNSGVLWSEAIFLEARPQ----RKTKSV--DALKKCEHDPHV--- 843
Query: 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
L A+L S +I +AR + + D W +++FE+ HG E+ E+ R
Sbjct: 844 LLAVAKLFWSERKITKAREWFHRTVKIDSDLGDA--WAFFYKFELQHGTEEQREEVRR 899
Score = 79 (32.9 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 47/199 (23%), Positives = 73/199 (36%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412
K V LR A E R L ++L R H + V G +K + A R+
Sbjct: 574 KSVWLRAAYFEKNHGTRESL-EALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARS 629
Query: 413 VDPMKAVGKPHT--LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW--- 467
+ + P++ +W+A KL + AR + KA + S+ EW
Sbjct: 630 ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG 689
Query: 468 ---AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK---SLRLWTFY 521
A EL + K + + + +E + + E L K S LW
Sbjct: 690 NLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYNQGLKKCPHSTPLWLLL 749
Query: 522 VDLEESLGNLESTRAVYER 540
LEE +G L RA+ E+
Sbjct: 750 SRLEEKVGQLTRARAILEK 768
Score = 59 (25.8 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S++LW + E P R ++ RA++ P S +LW A + RL +N
Sbjct: 401 PNSVRLW--KAAVELEEPEDARIML-SRAVECCPTSVELWLA--LARLETYENAR----- 450
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ LN E H IWI + + + DRA+ +L
Sbjct: 451 -KVLNKARENIPTDRH----IWITAAKLEEANGNTQMVEKIIDRAITSL 494
Score = 54 (24.1 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++++ R + + KKR + +AL+ +P S +LW A
Sbjct: 370 PQSVRIYIRAAELETDIRAKKR--VLRKALEHVPNSVRLWKA 409
Score = 47 (21.6 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 127 RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLW 186
+A+ A V + IY+R E +ET +R +R L+ H+ + + +LW
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAE-----LETDIRAKKRVLRKALEHVPNSV------RLW 407
Query: 187 QEAAE 191
+ A E
Sbjct: 408 KAAVE 412
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 101 (40.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 49/187 (26%), Positives = 87/187 (46%)
Query: 534 TRAVYER-ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY- 591
T ++YER I L + + YA EEHK FE +Y+R + I H+ +TY
Sbjct: 312 TISLYERAITGLMKESKLLYFAYADFQEEHKQFEAVKNIYDRLLGI---EHINPT-LTYV 367
Query: 592 -LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR-AMKVYDQ 649
L +F++R AR +F+ A E +++ A LE + K A++V+
Sbjct: 368 QLMRFIRR--SEGPNNARLVFKRAREDKRTGY--QVFVAAALLEYNCMKDKEVAIRVFKL 423
Query: 650 ATKAVPNHEKLGM-YEIYIARAAEIFGVPKTREIYEQAIESG-LP-DKDVKAMCLKYAEL 706
K N + G+ Y +++ E TR ++E+ + S LP DK ++ ++ +
Sbjct: 424 GLKKYENEPEFGLAYADFLSNLNED---NNTRVVFERILTSSKLPADKSIRIWD-RFLDF 479
Query: 707 EKSLGEI 713
E +G++
Sbjct: 480 ESCVGDL 486
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 28/101 (27%), Positives = 43/101 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NPF + W L + P + YE +K P S + W AY+ L KN
Sbjct: 16 NPFDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRS-KN------ 68
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123
+E + F R LV++ + +W Y+ + F TK +R
Sbjct: 69 -FENVEKLFSRCLVSVLNID-LWKCYIHYV----FETKGQR 103
>FB|FBgn0039182 [details] [associations]
symbol:CG5728 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 EMBL:AE014297 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000381 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
EMBL:AY061461 RefSeq:NP_651245.1 UniGene:Dm.1316 SMR:Q9VC94
STRING:Q9VC94 EnsemblMetazoa:FBtr0084632 GeneID:42899
KEGG:dme:Dmel_CG5728 UCSC:CG5728-RA FlyBase:FBgn0039182
InParanoid:Q9VC94 OMA:NEKSFPR OrthoDB:EOG4JQ2CH GenomeRNAi:42899
NextBio:831166 Uniprot:Q9VC94
Length = 1430
Score = 139 (54.0 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 67/291 (23%), Positives = 122/291 (41%)
Query: 386 EQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL--WVAFAKLYETYKDIANAR 443
EQ R ++ +P ++ T + R V + +P+ W+ + + +I AR
Sbjct: 1147 EQRLREIEERNADPKARLETIDQYERLV-----IAQPNNSISWLKYIAFLLSNTEIEKAR 1201
Query: 444 VIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKN-FKGALE--LMRRATAEPSVEV---- 495
+ +A+ ++++ L ++W MEL + N F L+ L E + V
Sbjct: 1202 ALARRAISTISFRETQELRNMWSALLNMELVYSNNFDDVLKEALNCNDPLEIYISVVDIL 1261
Query: 496 RRRVAADGNEPVQM----KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
++ D V K LR+W + LG + + +R L I
Sbjct: 1262 KKNKRKDRLSSVLTTVLNKFKTELRVWPVAAEAYFWLGKSDQVHNLLQRALRALPNQEHI 1321
Query: 552 --IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609
I+++A L +H + A + + V YP DIW Y+ +K G ++ AR
Sbjct: 1322 PCIVSFAKLYAKHDNNDMAQTLLDDVVT--SYPKRIDIWSVYVDMLIKA-GL--IDSARN 1376
Query: 610 LFENAV-ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659
+ E AV + + ++ +Y +Y +LEE++G KV QA + V N+ K
Sbjct: 1377 VLERAVVQKLKPNKMQVIYKKYLQLEENHGTDATVAKVKQQAEQWVKNYAK 1427
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 148 (57.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 63/252 (25%), Positives = 113/252 (44%)
Query: 566 EDAFRVYERGVKIFKYPHVKD---IWVTYLSKFVKRYGKTKLERARELFENAVE-TAPAD 621
E A V ER +K + ++ +WV L+ YG E ++FE AV+ P
Sbjct: 1640 EKARAVAERALKTISFREEQEKLNVWVALLN-LENMYGSQ--ESLAKVFERAVQYNEPLK 1696
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK--- 678
L Y K E+ K A ++Y++ K EK ++I A + G +
Sbjct: 1697 VFLHLADIYTKSEK----FKEAGELYNRMLKRF-RQEKA----VWIKYGAFVLGRSQAGA 1747
Query: 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR 738
+ + ++A+E LP K+ + +K+A+LE LG+++RA+ I F + T+ W+
Sbjct: 1748 SHRVLQRALEC-LPTKEHVDVIVKFAQLEFQLGDVERAKAI--FENTLTTYPKRTDVWSV 1804
Query: 739 WHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKD-KLKQAG 797
+ + + HG++ R++ +S + + F YL + Q + D + K K
Sbjct: 1805 YIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE 1864
Query: 798 VHEDEMAALERQ 809
E + +ALE Q
Sbjct: 1865 YVEAKSSALEDQ 1876
Score = 45 (20.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279
LW ++++ EKAR + E + T+
Sbjct: 1625 LWLQYMAFHLQATEIEKARAVAERALKTI 1653
>UNIPROTKB|O94906 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9606
"Homo sapiens" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=NAS]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=NAS;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IGI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006403 "RNA
localization" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050681 "androgen receptor binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IC;IMP] Reactome:REACT_71 InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 SMART:SM00386
GO:GO:0005654 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0045944
GO:GO:0005682 GO:GO:0000244 GO:GO:0003723 Orphanet:791
EMBL:AL118506 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0071013 GO:GO:0000245 GO:GO:0046540
GO:GO:0006403 ChiTaRS:PRPF6 GO:GO:0071001 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW EMBL:AB019219 EMBL:AF221842
EMBL:AF026031 EMBL:AK001554 EMBL:AK314310 EMBL:AL356790
EMBL:AL355803 EMBL:BC001666 EMBL:AL137320 IPI:IPI00305068
PIR:T46386 RefSeq:NP_036601.2 UniGene:Hs.31334
ProteinModelPortal:O94906 SMR:O94906 DIP:DIP-29006N IntAct:O94906
MINT:MINT-260551 STRING:O94906 PhosphoSite:O94906 PaxDb:O94906
PeptideAtlas:O94906 PRIDE:O94906 Ensembl:ENST00000266079
Ensembl:ENST00000535781 GeneID:24148 KEGG:hsa:24148 UCSC:uc002yho.3
GeneCards:GC20P062612 HGNC:HGNC:15860 HPA:HPA047106 MIM:613979
MIM:613983 neXtProt:NX_O94906 PharmGKB:PA25682 InParanoid:O94906
PhylomeDB:O94906 GenomeRNAi:24148 NextBio:46847 Bgee:O94906
CleanEx:HS_PRPF6 Genevestigator:O94906 GermOnline:ENSG00000101161
Uniprot:O94906
Length = 941
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 80/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 290 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 404
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 405 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 452
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 453 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 510
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + + I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 570
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 571 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 598
Score = 95 (38.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 52/186 (27%), Positives = 84/186 (45%)
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639
K PH +W+ LS+ ++ G+ L RAR + E + P + L+L+ +LE GL
Sbjct: 738 KCPHSTPLWLL-LSRLEEKIGQ--LTRARAILEKSRLKNPKNP--GLWLESVRLEYRAGL 792
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYI-ARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698
A + +A + PN L I++ AR P+ R A++ D V
Sbjct: 793 KNIANTLMAKALQECPNSGILWSEAIFLEAR-------PQRRTKSVDALKKCEHDPHV-- 843
Query: 699 MCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI 758
L A+L S +I +AR + + D W +++FE+ HG E+ +E +R
Sbjct: 844 -LLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDA--WAFFYKFELQHGTEEQ-QEEVR- 898
Query: 759 KRSVSA 764
KR SA
Sbjct: 899 KRCESA 904
Score = 78 (32.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 46/200 (23%), Positives = 78/200 (39%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412
K V LR A E R L ++L R H + V G +K + A R+
Sbjct: 574 KSVWLRAAYFEKNHGTRESL-EALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARS 629
Query: 413 VDPMKAVGKPHT--LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470
+ + P++ +W+A KL + AR + KA + S+ EW +
Sbjct: 630 ILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQD 689
Query: 471 ELRH---------KNFKGALEL-MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520
+R ++++ +L M + E E+ + N+ ++ H S LW
Sbjct: 690 NIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPH-STPLWLL 748
Query: 521 YVDLEESLGNLESTRAVYER 540
LEE +G L RA+ E+
Sbjct: 749 LSRLEEKIGQLTRARAILEK 768
Score = 59 (25.8 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S++LW + E P R ++ RA++ P S +LW A + RL +N
Sbjct: 401 PNSVRLW--KAAVELEEPEDARIML-SRAVECCPTSVELWLA--LARLETYENAR----- 450
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ LN E H IWI + + + DRA+ +L
Sbjct: 451 -KVLNKARENIPTDRH----IWITAAKLEEANGNTQMVEKIIDRAITSL 494
Score = 54 (24.1 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++++ R + + KKR + +AL+ +P S +LW A
Sbjct: 370 PQSVRIYIRAAELETDIRAKKR--VLRKALEHVPNSVRLWKA 409
Score = 47 (21.6 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 127 RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLW 186
+A+ A V + IY+R E +ET +R +R L+ H+ + + +LW
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAE-----LETDIRAKKRVLRKALEHVPNSV------RLW 407
Query: 187 QEAAE 191
+ A E
Sbjct: 408 KAAVE 412
>UNIPROTKB|F1RJ62 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:FP089481 RefSeq:XP_003131794.1 UniGene:Ssc.6804
Ensembl:ENSSSCT00000019313 GeneID:100524172 KEGG:ssc:100524172
Uniprot:F1RJ62
Length = 598
Score = 122 (48.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 70/315 (22%), Positives = 139/315 (44%)
Query: 390 RRVKIFEGNPTKQ--ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFD 447
++ K+ E ++ Y EAV+T+ P +A+ K ++ F E + N++++ +
Sbjct: 296 KQAKVAEATRREERCCAVYEEAVKTL-PTEAMWK---CYLNFCM--ERFTKKTNSQLLRE 349
Query: 448 KAVQ---VNYKTVDHLASI----WCEWAEMELRHKNFKGALELMRRATA--EPSV---EV 495
K ++ V ++ L + + +W+E+ L+H FK ALE+ T + SV +V
Sbjct: 350 KRLERTMVAFRKAHELRLLPEVQYKQWSELLLQHNLFKEALEVAGAGTELFQDSVMMWQV 409
Query: 496 RRRVAADGNEP----------VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545
+ +V P V++K L LW + + E + E T A++++ +
Sbjct: 410 KLQVLIASESPDVAMVFEEAFVRLKPQICLPLWISWAEWSEGAKSQEDTEAIFKKAVLAV 469
Query: 546 IATPQIIINYALLLEEHKYFEDAFRV--YERGVKIFK-YPHVKDIWVTYLSK---FVKRY 599
+ + + + KY + A+R Y++ +FK + V + K F K
Sbjct: 470 MGADSVTL-------KDKYLDWAYRSSGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQ 522
Query: 600 GKTKLERARELFENAV-ETAPADAVKPLYLQYAKLEEDYGLAK--RAMKVYDQATKAVPN 656
K+ RE +E A+ E D+ L++ Y K E D+ L + ++Y +A K +
Sbjct: 523 ESCKMANLREYYERALREFGSVDS--DLWMDYIKEELDHPLGRPENCGQIYWRAMKMLQG 580
Query: 657 HEKLGMYEIYIARAA 671
E+++A+ A
Sbjct: 581 EAA----ELFVAKHA 591
Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/118 (20%), Positives = 51/118 (43%)
Query: 87 LNNTFERALVTMHKMPRIWIMYLETLTSQKFITK-ARRTFDRALCALPVTQHDRIWEIYL 145
L+ F L P +WIM + + ++ AR+ F RAL P + ++++ Y
Sbjct: 126 LSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHP--ECPKLYQEYF 183
Query: 146 RFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFY 203
R + + + K D ++E + E ++K +L + + S++ +F+
Sbjct: 184 RMELMHAEKLRKEKQEFET-AKMDVENLE-YSEEILKGELARIIYKNSVSIIKGAEFH 239
>ASPGD|ASPL0000068414 [details] [associations]
symbol:AN7447 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SMART:SM00386 GO:GO:0005634 eggNOG:COG0457
Gene3D:1.25.40.10 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000398
HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_680716.1
ProteinModelPortal:Q5AW83 STRING:Q5AW83
EnsemblFungi:CADANIAT00000537 GeneID:2869476 KEGG:ani:AN7447.2
Uniprot:Q5AW83
Length = 941
Score = 130 (50.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 57/220 (25%), Positives = 98/220 (44%)
Query: 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576
+W DLE + G E+ V E+ ++ + ++ + A + +DA RV R
Sbjct: 577 IWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAF 636
Query: 577 KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636
+ P+ +DIW+ + K +T ++AREL A A D V +++ E
Sbjct: 637 N--QNPNNEDIWLAAV-KLEADAQQT--DQARELLATARREAGTDRV---WIKSVAFERQ 688
Query: 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696
G A+ + +Q + P +KL M + I + +P+ RE Y + P K V
Sbjct: 689 LGNVDDALDLVNQGLQLYPKADKLWMMKGQIYESQN--KLPQAREAYGTGTRA-CP-KSV 744
Query: 697 KAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFW 736
A+ L + LE+ G + RAR + + ++ A P S E W
Sbjct: 745 -ALWLLASRLEEKAGAVVRARSV-LDRARLAVPNSP-ELW 781
Score = 125 (49.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 63/278 (22%), Positives = 116/278 (41%)
Query: 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484
+W+ AK + AR I+ A++V V+ SIW A++E H + +++
Sbjct: 543 IWMDDAKASISRGKYETARAIYAYALRV---FVNR-RSIWVAAADLERNHGTKEALWQVL 598
Query: 485 RRAT-AEP-SVEVRRRVAAD----GN-EPVQMKLHKSLR-------LWTFYVDLEESLGN 530
+A A P S E+ ++A + G + + L ++ +W V LE
Sbjct: 599 EKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQ 658
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590
+ R + T ++ I + +DA + +G+++ YP +W
Sbjct: 659 TDQARELLATARR-EAGTDRVWIKSVAFERQLGNVDDALDLVNQGLQL--YPKADKLW-- 713
Query: 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650
+ K + KL +ARE + P L+L ++LEE G RA V D+A
Sbjct: 714 -MMKGQIYESQNKLPQAREAYGTGTRACPKSVA--LWLLASRLEEKAGAVVRARSVLDRA 770
Query: 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688
AVPN +L + + R A +P+ + + +A++
Sbjct: 771 RLAVPNSPELWTESVRVERRAN--NIPQAKVLMARALQ 806
Score = 60 (26.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++LW +A+ E P + V+ A KA+P S+++W A
Sbjct: 432 PLSVELW--LALARLETPENAQKVL-NAARKAVPTSHEIWIA 470
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSV 287
D+ +W A I R +E AR I+ + V R V
Sbjct: 538 DDRKDIWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWV 579
>POMBASE|SPAC6F12.17 [details] [associations]
symbol:rna14 "mRNA cleavage and polyadenylation
specificity factor complex subunit Rna14 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPAC6F12.17
GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006378
Gene3D:1.25.40.10 GO:GO:0005847 GO:GO:0006379 eggNOG:COG5107
KO:K14408 OrthoDB:EOG49S9G9 PIR:T11668 RefSeq:NP_593303.1
ProteinModelPortal:O14233 STRING:O14233 EnsemblFungi:SPAC6F12.17.1
GeneID:2541600 KEGG:spo:SPAC6F12.17 OMA:YTKWENE NextBio:20802694
Uniprot:O14233
Length = 733
Score = 105 (42.0 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED---AFRVYER 574
W ++ +++ RA++ + + +I I A++ EH D A R++E
Sbjct: 443 WCCLINAIRRTEGVKAARAIFTKARKAPYQSHEIYIASAMM--EHHCSRDPVIASRIFEL 500
Query: 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634
G++ F V YLS + +T AR LFE A+ AD KP+Y ++ E
Sbjct: 501 GMRHFG--DVPAYVYKYLSYLIAINDETN---ARALFEKAIPRIAADEAKPIYQKWLDYE 555
Query: 635 EDYG-------LAKRAMKVYDQ-ATKAV 654
+YG L++R VY Q +T+A+
Sbjct: 556 SNYGDLNAAIALSQRMAVVYPQESTQAI 583
Score = 78 (32.5 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE 142
++E L T+E+ L +PR+W+ Y+ + + F R C + V D +W
Sbjct: 86 KHEELRETYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSR--CLVKVLSVD-LWT 142
Query: 143 IYLRFVEQ 150
+YL ++ +
Sbjct: 143 LYLSYIRR 150
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 80/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 290 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 404
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 405 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 452
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 453 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 510
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + + I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 570
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 571 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 598
Score = 92 (37.4 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 48/185 (25%), Positives = 84/185 (45%)
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639
K PH +W+ LS+ ++ G+ L RAR + E + P + L+L+ +LE GL
Sbjct: 738 KCPHSTPLWLL-LSRLEEKIGQ--LTRARAILEKSRLKNPKNP--GLWLESVRLEYRAGL 792
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699
A + +A + PN L +++ + KT+ + A++ D V
Sbjct: 793 KNIANTLMAKALQECPNSGILWSEAVFLEARPQ----RKTKSV--DALKKCEHDPHV--- 843
Query: 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIK 759
L A+L S +I +AR + + D W +++FE+ HG E+ +E +R K
Sbjct: 844 LLAVAKLFWSERKITKAREWFHRTVKIDSDLGDA--WAFFYKFELQHGTEEQ-QEEVR-K 899
Query: 760 RSVSA 764
R +A
Sbjct: 900 RCENA 904
Score = 80 (33.2 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 53/201 (26%), Positives = 79/201 (39%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412
K V LR A E R L ++L R H + V G +K + A R+
Sbjct: 574 KSVWLRAAYFEKNHGTRESL-EALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARS 629
Query: 413 VDPMKAVGKPHT--LWVAFAKLYETYKDIANARVIFDKA------VQVNYKTVDH---LA 461
+ + P++ +W+A KL + AR + KA +V K+V L
Sbjct: 630 ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG 689
Query: 462 SIWC--EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT 519
+I E E LRH L +M+ E E+ R N+ ++ H S LW
Sbjct: 690 NITAAQELCEEALRHYEDFPKLWMMKGQIEEQG-ELMERAREAYNQGLKKCPH-STPLWL 747
Query: 520 FYVDLEESLGNLESTRAVYER 540
LEE +G L RA+ E+
Sbjct: 748 LLSRLEEKIGQLTRARAILEK 768
Score = 59 (25.8 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S++LW + E P R ++ RA++ P S +LW A + RL +N
Sbjct: 401 PNSVRLW--KAAVELEEPEDARIML-SRAVECCPTSVELWLA--LARLETYENAR----- 450
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ LN E H IWI + + + DRA+ +L
Sbjct: 451 -KVLNKARENIPTDRH----IWITAAKLEEANGNTQMVEKIIDRAITSL 494
Score = 54 (24.1 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++++ R + + KKR + +AL+ +P S +LW A
Sbjct: 370 PQSVRIYIRAAELETDIRAKKR--VLRKALEHVPNSVRLWKA 409
Score = 47 (21.6 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 127 RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLW 186
+A+ A V + IY+R E +ET +R +R L+ H+ + + +LW
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAE-----LETDIRAKKRVLRKALEHVPNSV------RLW 407
Query: 187 QEAAE 191
+ A E
Sbjct: 408 KAAVE 412
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 133 (51.9 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 84/333 (25%), Positives = 146/333 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 293 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 348
Query: 493 -VEVRRRVAADGNEPV--QMKLH--KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547
+E R D + V Q H +S+R++ +LE ++ + + V + L+ ++
Sbjct: 349 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELET---DIRAKKRVLRKALE-NVS 404
Query: 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E A
Sbjct: 405 KSVRLWKTAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENA 452
Query: 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-I 665
R + A E P D + +++ AKLEE G + K+ D+A T N ++ + I
Sbjct: 453 RRVLNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWI 510
Query: 666 YIARAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFAS 724
A + G V + + I G+ ++D K ++ A+ S G ++ AR IY A
Sbjct: 511 QDAEECDKAGSVVTCQSVIRAVIGIGIEEEDCKHTWMEDADSCVSHGALECARAIYAHAL 570
Query: 725 QFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
Q P S W R FE N+G ++ +L+
Sbjct: 571 QVF-P-SKKSVWLRAAYFEKNNGTRESLEALLQ 601
>TAIR|locus:2086132 [details] [associations]
symbol:HCF107 "high chlorophyll fluorescent 107"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;IMP]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006417 "regulation
of translation" evidence=RCA;IMP] [GO:0009657 "plastid
organization" evidence=RCA;IMP] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005774 EMBL:CP002686 GO:GO:0006417
GO:GO:0009941 GO:GO:0006396 GO:GO:0009657 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:AY093112 EMBL:BT008405
IPI:IPI00517465 RefSeq:NP_188329.1 UniGene:At.22706
ProteinModelPortal:Q8RWG2 SMR:Q8RWG2 STRING:Q8RWG2 PaxDb:Q8RWG2
PRIDE:Q8RWG2 EnsemblPlants:AT3G17040.1 GeneID:820961
KEGG:ath:AT3G17040 TAIR:At3g17040 eggNOG:NOG300398
InParanoid:Q8RWG2 OMA:MEWKEGN PhylomeDB:Q8RWG2
ProtClustDB:CLSN2684191 ArrayExpress:Q8RWG2 Genevestigator:Q8RWG2
Uniprot:Q8RWG2
Length = 652
Score = 131 (51.2 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 77/352 (21%), Positives = 140/352 (39%)
Query: 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479
G+P+ VA K+ +A AR++++K Q T + IW WA +E R N +
Sbjct: 202 GRPY---VALGKILSKQSKLAEARILYEKGCQ---STQGENSYIWQCWAVLENRLGNVRR 255
Query: 480 ALELMRRATAEPSVEVR------RRVAADGN-EPVQMKLHKSLR-------LWTFYVDLE 525
A EL AT V GN + L K L+ ++ LE
Sbjct: 256 ARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLE 315
Query: 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585
G E R ++++ + + +A L + + + A +++E+ V+ P +
Sbjct: 316 AKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQAS--PKNR 373
Query: 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ-YAKLEEDYGLAKRAM 644
W + V G +ER R+L + P D P+ LQ LE + A A
Sbjct: 374 FAWHVW---GVFEAGVGNVERGRKLLKIGHALNPRD---PVLLQSLGLLEYKHSSANLAR 427
Query: 645 KVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK-Y 703
+ +A++ P H+ + + ++ RE+Y++A+ + + + CL+ +
Sbjct: 428 ALLRRASELDPRHQPVWIAWGWMEWKEG--NTTTARELYQRALSIDA-NTESASRCLQAW 484
Query: 704 AELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
LE+ G + AR + F S W W + E + G+ + E+
Sbjct: 485 GVLEQRAGNLSAARRL--FRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEI 534
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 150 (57.9 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 57/241 (23%), Positives = 110/241 (45%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNL--ESTRAVYERILDLRIATP 549
+E R +A + ++ + L +W Y +LE GN ES + V+ER + P
Sbjct: 1663 IEKARSIAERALRTINIREEEEKLNIWVAYFNLENEHGNPPEESVKKVFERAR--QYCDP 1720
Query: 550 QIIINYALL--LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607
+ + ALL E + ++ A ++ + +K FK K IW+ + +K+ E
Sbjct: 1721 KKVY-LALLGVYERTEQYKLADKLLDEMIKKFKQS-CK-IWLRKIQSSLKQ----NEEAI 1773
Query: 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667
+ + A+ P Q A LE G+A R +++ + P ++ ++ +Y+
Sbjct: 1774 QSVVNRALLCLPRHKHIKFISQTAILEFKCGVADRGRSLFEGVLREYP--KRTDLWSVYL 1831
Query: 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ + R ++E+AI LP K +K + K+ E EKS+G+ +R + A ++A
Sbjct: 1832 DQEIRLGEDDVIRSLFERAISLSLPPKKMKFLFKKFLEYEKSVGDEERVEYVKQRAMEYA 1891
Query: 728 D 728
+
Sbjct: 1892 N 1892
Score = 39 (18.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD 284
+W + + EKAR I E + T+ +R+
Sbjct: 1649 VWIKYMAFMLSLADIEKARSIAERALRTI-NIRE 1681
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 149 (57.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 46/221 (20%), Positives = 107/221 (48%)
Query: 493 VEVRRRVAADGNEPVQMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551
+E R VA + + + + L +W ++LE G +S + V+ER + + P +
Sbjct: 1580 IEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFERAI--QYCEPLL 1637
Query: 552 IINY-ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A + + + ++A +Y+ VK F+ K ++++Y F+ R ++ + A L
Sbjct: 1638 VYQQLADIYAKSEKIKEAESLYKSMVKRFRQD--KAVYLSY-GTFLLRQRQS--DAANAL 1692
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA 670
+ A+++ + L ++A+LE +G +++A ++D+ P ++ ++ ++I
Sbjct: 1693 LQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDKVLTTYP--KRTDLWSVFIDLM 1750
Query: 671 AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLG 711
+ + RE++++ I + K +K +Y E EK G
Sbjct: 1751 VKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKNG 1791
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 261 RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311
R+EL ++ ++ ++ + D SV D+ + FE +++S+ PD S+
Sbjct: 1519 RKELKQEQQNTEQKLSKLEAELMDTSVRPDNSTAFERLLLSS----PDSSL 1565
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 80/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 290 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 404
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 405 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 452
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 453 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 510
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + + I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 570
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 571 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 598
Score = 92 (37.4 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 48/185 (25%), Positives = 84/185 (45%)
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639
K PH +W+ LS+ ++ G+ L RAR + E + P + L+L+ +LE GL
Sbjct: 738 KCPHSTPLWLL-LSRLEEKIGQ--LTRARAILEKSRLKNPKNP--GLWLESVRLEYRAGL 792
Query: 640 AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699
A + +A + PN L +++ + KT+ + A++ D V
Sbjct: 793 KNIANTLMAKALQECPNSGILWSEAVFLEARPQ----RKTKSV--DALKKCEHDPHV--- 843
Query: 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIK 759
L A+L S +I +AR + + D W +++FE+ HG E+ +E +R K
Sbjct: 844 LLAVAKLFWSERKITKAREWFHRTVKIDSDLGDA--WAFFYKFELQHGTEEQ-QEEVR-K 899
Query: 760 RSVSA 764
R +A
Sbjct: 900 RCENA 904
Score = 76 (31.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 49/201 (24%), Positives = 75/201 (37%)
Query: 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRT 412
K V LR A E R L ++L R H + V G +K + A R+
Sbjct: 574 KSVWLRAAYFEKNHGTRESL-EALLQRAVAHCPKA---EVLWLMGAKSKWLAGDVPAARS 629
Query: 413 VDPMKAVGKPHT--LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA-- 468
+ + P++ +W+A KL + AR + KA + S+ EW
Sbjct: 630 ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG 689
Query: 469 ---------EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWT 519
E LRH L +M+ E E+ + N+ ++ H S LW
Sbjct: 690 NISAAQELCEEALRHYEDFPKLWMMKGQIEEQG-ELMEKAREAYNQGLKKCPH-STPLWL 747
Query: 520 FYVDLEESLGNLESTRAVYER 540
LEE +G L RA+ E+
Sbjct: 748 LLSRLEEKIGQLTRARAILEK 768
Score = 59 (25.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE 83
P S++LW + E P R ++ RA++ P S +LW A + RL +N
Sbjct: 401 PNSVRLW--KAAVELEEPEDARIML-SRAVECCPTSVELWLA--LARLETYENAR----- 450
Query: 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132
+ LN E H IWI + + + DRA+ +L
Sbjct: 451 -KVLNKARENIPTDRH----IWITAAKLEEANGNTQMVEKIIDRAITSL 494
Score = 54 (24.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 24 PFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHA 65
P S++++ R + + KKR + +AL+ +P S +LW A
Sbjct: 370 PQSVRIYIRAAELETDIRAKKR--VLRKALEHVPNSVRLWKA 409
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 130 (50.8 bits), Expect = 0.00019, P = 0.00019
Identities = 80/330 (24%), Positives = 142/330 (43%)
Query: 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PS---- 492
DI AR++ K+V+ +T H W A +E + A L+ + T P
Sbjct: 290 DIKKARLLL-KSVR---ETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 493 -VEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550
+E R D + V + + L + Y+ E ++ + + V + L+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALE-HVPNSV 404
Query: 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610
+ A+ LEE EDA + R V+ P ++W+ L++ ++ Y E AR++
Sbjct: 405 RLWKAAVELEEP---EDARIMLSRAVECC--PTSVELWLA-LAR-LETY-----ENARKV 452
Query: 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA-TKAVPNHEKLGMYE-IYIA 668
A E P D + +++ AKLEE G + K+ D+A T N ++ + I A
Sbjct: 453 LNKARENIPTD--RHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDA 510
Query: 669 RAAEIFG-VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727
+ G V + + I G+ ++D K ++ A+ + ++ AR IY +A Q
Sbjct: 511 EECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVF 570
Query: 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757
P S W R FE NHG ++ +L+
Sbjct: 571 -P-SKKSVWLRAAYFEKNHGTRESLEALLQ 598
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 141 (54.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 58/248 (23%), Positives = 111/248 (44%)
Query: 566 EDAFRVYERGVKIFKYPHVKD---IWVTYLSKFVKRYGKTKLERARELFENAVE-TAPAD 621
E A V ER +K + ++ +WV L+ YG E ++FE AV+ P
Sbjct: 1636 EKARAVAERALKTISFREEQEKLNVWVALLN-LENMYGSQ--ESLTKVFERAVQYNEPLK 1692
Query: 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM-YEIYIARAAEIFGVPKTR 680
L YAK E+ + A ++Y++ K + + + Y ++ R ++ +
Sbjct: 1693 VFLHLADIYAKSEK----FQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQ---AAASH 1745
Query: 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWH 740
+ ++A+E LP K+ + K+A+LE LG+ +RA+ I F + + T+ W+ +
Sbjct: 1746 RVLQRALEC-LPSKEHVDVIAKFAQLEFQLGDAERAKAI--FENTLSTYPKRTDVWSVYI 1802
Query: 741 EFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKD-KLKQAGVH 799
+ + HG++ R++ +S + + F YL + Q + D + K K
Sbjct: 1803 DMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV 1862
Query: 800 EDEMAALE 807
E + + LE
Sbjct: 1863 EAKSSVLE 1870
Score = 42 (19.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 348 WLH--DVKDVDLRLARLEH--LMNRRPELANSVLLRQNPHNVEQWH 389
WL D+ L L++ E L+ R+P L ++V Q+P N + H
Sbjct: 682 WLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIH 727
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 90 (36.7 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 50 ERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYL 109
++ + P + ++W +L + + I ++ + E + FERA+ + P IW+ Y+
Sbjct: 99 QKMSELFPLTEEIWLDWLKDEIRITED----ESDRERVYELFERAIKD-YVCPEIWLEYV 153
Query: 110 ET----LTSQKFITKARRTFDRALCA--LPVTQHDRIWEIYLRF 147
+ + +Q I + R F+RAL A L +T+ IWE Y F
Sbjct: 154 QYSIGGMGAQGGIERVRSIFERALTAVGLHMTKGASIWEAYREF 197
Score = 85 (35.0 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 29/123 (23%), Positives = 52/123 (42%)
Query: 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED-AFRVYERGVKIF 579
Y+D E G+ + ++ R L P + I Y L+ +D +ER V+
Sbjct: 297 YIDFEIKEGDPARVQIIFGRALAENCLVPDLWIKYTTYLDRQLKIKDLVLSAHERAVR-- 354
Query: 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA---PADAVK--PLYLQYAKLE 634
P +W +YL ++R+G + +++FE A+ D V+ YL Y +
Sbjct: 355 NCPWTMGLWKSYLLA-LERHGADH-QTVKDVFEKALNAGFIQATDYVEIWQSYLDYLRRR 412
Query: 635 EDY 637
D+
Sbjct: 413 VDF 415
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717
K RE+++ + G + M L+Y LE+S G+ R
Sbjct: 472 KARELWDSIMTKG--NAKYANMWLEYYNLERSYGDAAHCR 509
>UNIPROTKB|E1BGY7 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:DAAA02041256 EMBL:DAAA02041257
IPI:IPI00709818 Ensembl:ENSBTAT00000011369 Uniprot:E1BGY7
Length = 718
Score = 93 (37.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82
NP+ L W + + P K YER + P S + W Y+ + KN
Sbjct: 28 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKN------ 80
Query: 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-----FITKARRTFDRAL--CALPVT 135
Y+ + F+R L+ + + +W YL + K + K + +D AL + +
Sbjct: 81 -YDKVEKLFQRCLMKVLHID-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 138
Query: 136 QHDRIWEIYLRF---VEQEGIPIE----TSLR-VYRR 164
+ +IW Y+ F VE G E T++R VY+R
Sbjct: 139 SY-QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 174
Score = 91 (37.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 41/153 (26%), Positives = 69/153 (45%)
Query: 24 PFSLKLWWRYLVAKREAP-FKKRFVIYERAL-KALPGSYKLWHAYLIERLSIVKNLPITH 81
P S + W Y+ A+ +A + K +++R L K L LW YL S V+
Sbjct: 62 PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYL----SYVRETKGKL 115
Query: 82 PEY-ETLNNTFERAL--VTMHKMP-RIWIMYLETL---------TSQKFITKARRTFDRA 128
P Y E + ++ AL + M M +IW+ Y+ L + IT RR + R
Sbjct: 116 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 175
Query: 129 LCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161
C P+ +++W Y ++ +EGI I + ++
Sbjct: 176 -CVNPMINIEQLWRDYNKY--EEGINIHLAKKM 205
Score = 81 (33.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 51/254 (20%), Positives = 101/254 (39%)
Query: 517 LWTFYVDLEESLG-NLESTRAVYERILDLRIATPQIIINYA-LLLEEHKYFEDAFRVY-E 573
+W Y+ E+S E + +R++ ++ ++ + E +Y E + ++ E
Sbjct: 251 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 310
Query: 574 RGVKIFKYP-----H-VK-DIWVTY-LSK-----FVKRYGKT---KLERARELFENAVET 617
+GV + +P H +K + +VT LS +V Y ++ K E+ ++ +
Sbjct: 311 KGVSVHFFPPFWSFHELKLESYVTMNLSDPIILFYVYTYDESSRMKYEKVHSIYNRLLAI 370
Query: 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677
D +Y+QY K K ++ +A + + +Y+ A +
Sbjct: 371 EDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDTRTR-----HHVYVTAALMEYYCN 424
Query: 678 KTREIYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIY--VFASQFADPRSDTE 734
+ + + + E GL D+ L Y + L E + R ++ V S P E
Sbjct: 425 RDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 484
Query: 735 FWNRWHEFEVNHGN 748
W R+ FE N G+
Sbjct: 485 IWARFLAFESNIGD 498
>DICTYBASE|DDB_G0280363 [details] [associations]
symbol:DDB_G0280363 species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 dictyBase:DDB_G0280363 GO:GO:0005622
EMBL:AAFI02000035 EMBL:AAFI02000036 GO:GO:0006396 Gene3D:1.25.40.10
RefSeq:XP_641155.1 RefSeq:XP_641400.1 ProteinModelPortal:Q54VF4
GeneID:8622534 GeneID:8622535 KEGG:ddi:DDB_G0280363
KEGG:ddi:DDB_G0280519 eggNOG:NOG282937 InParanoid:Q54VF5
ProtClustDB:CLSZ2497219 Uniprot:Q54VF4
Length = 1304
Score = 127 (49.8 bits), Expect = 0.00059, P = 0.00059
Identities = 78/377 (20%), Positives = 159/377 (42%)
Query: 367 NRRPELANSVLLRQN-PHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL 425
++R EL S + +Q H ++Q+ + K EG + +V P K + +
Sbjct: 719 SKRGELVESPVSKQQYKHFIKQFKLKEK--EGLEIAMEFAFQSL--SVLPEKVHWR---V 771
Query: 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL---RHKNFKGALE 482
++ A L ++ AR + K T +++ W E+A+ME R + + L+
Sbjct: 772 YLELADLANRQNNLKLARKFYRKVTS----TQPYISQGWLEYAKMEEDYGRLEKCQKILQ 827
Query: 483 L-MRRATAEPSV---EVRRRVAADGNEPV-----QMKLHKSLRLWTFYVD---LEESLGN 530
L ++ S+ +R D E Q++ + W ++ LE GN
Sbjct: 828 LGLKHCPFNESLLIKGIRHEEKMDNLEGARALLSQLRDQSIYKTWRAVMEGGLLEARAGN 887
Query: 531 LESTRAVYERILDLRIATPQIIINYALLLEEH-KYFEDAFRVYERGVKIFKYPHVKDIWV 589
++ R +++ ++ + I A LEE + +E A + E+G +F+ P +W
Sbjct: 888 IDVARKIFKYLMK-HVPWYGPIYQEAYKLEERCEEYERAINIVEKG--LFEDPKYGPLWF 944
Query: 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649
+ L + K L+ R E A + + +Y + A++EE + Y +
Sbjct: 945 SALRLYEKT-SHGFLQSTRNTVERARQAVSREVTWKIYFEAAQIEERSKNLTLSRAAYVK 1003
Query: 650 ATKAVPNHEKLGMYEIYIARAAEIFGVPK---TREIYEQAIESGLPDKDVKAMCLKYAEL 706
+ + P E L ++++++ + R++ +A+E +P K + L+Y+ L
Sbjct: 1004 SVELCP--ENL-LWKVWLGGSRTELNADNICIARKLVFRALEE-VPSKLRSLVLLEYSRL 1059
Query: 707 EKSLGEIDRARGIYVFA 723
E+ G I+++R I A
Sbjct: 1060 EEYAGNINKSRRILKMA 1076
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 140 (54.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 65/293 (22%), Positives = 131/293 (44%)
Query: 524 LEESL---GNLESTRAVYERILDLRIATPQII-INYALLLEEHKYFEDAFRVYERGVKIF 579
+EE+L G + ++R+L L I+ + Y + E A V ER +K
Sbjct: 1590 IEEALMDPGRQPESADDFDRLL-LSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI 1648
Query: 580 KYPHVKD---IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636
+ ++ +WV L+ YG E ++FE AV+ + +K ++L A +
Sbjct: 1649 SFREEQEKLNVWVALLN-LENMYGSQ--ESLTKVFERAVQYN--EPLK-VFLHLADIYNK 1702
Query: 637 YGLAKRAMKVYDQATKAVPNHEKLGM-YEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695
+ A ++Y++ K + + + Y ++ R + G + + ++A+E LP+K+
Sbjct: 1703 SEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQA-GA--SHRVMQRALEC-LPNKE 1758
Query: 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755
+ K+A+LE LG+ +RA+ I F + + T+ W+ + + + HG++ R++
Sbjct: 1759 HVDVIAKFAQLEFQLGDAERAKAI--FENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDI 1816
Query: 756 LRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKD-KLKQAGVHEDEMAALE 807
+S + + F YL + Q + D + K K E + + LE
Sbjct: 1817 FERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVEAKSSVLE 1869
Score = 40 (19.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 365 LMNRRPELANSVLLRQNPHNVEQWH 389
L+ R+P L ++V Q+P N + H
Sbjct: 698 LLCRKPALVSTVEGGQDPKNFAEIH 722
>TAIR|locus:2040565 [details] [associations]
symbol:AT2G36730 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] InterPro:IPR002885
EMBL:CP002685 GenomeReviews:CT485783_GR PROSITE:PS51375
EMBL:AC006282 Pfam:PF01535 TIGRFAMs:TIGR00756 HOGENOM:HOG000237569
IPI:IPI00541658 PIR:A84784 RefSeq:NP_181211.1 UniGene:At.66328
ProteinModelPortal:Q9ZQA1 PaxDb:Q9ZQA1 PRIDE:Q9ZQA1
EnsemblPlants:AT2G36730.1 GeneID:818245 KEGG:ath:AT2G36730
GeneFarm:3668 TAIR:At2g36730 eggNOG:NOG273447 InParanoid:Q9ZQA1
OMA:YGAMVDI PhylomeDB:Q9ZQA1 ProtClustDB:CLSN2683944
Genevestigator:Q9ZQA1 Uniprot:Q9ZQA1
Length = 501
Score = 120 (47.3 bits), Expect = 0.00099, P = 0.00099
Identities = 53/227 (23%), Positives = 100/227 (44%)
Query: 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM-RRATAE 490
LY T K ++AR +FD+ + N + + + + E ++ L + F E++ +R +
Sbjct: 157 LYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECF---CEMIGKRFCPD 213
Query: 491 PSVEVRRRVAADGNEPVQMKLHKSL---------RLWTFYVDLEESLGNLESTRAVYERI 541
+ V A GN + +H + RL T VD+ G LE R V+ER+
Sbjct: 214 ETTMVVLLSACGGNLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERM 273
Query: 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601
+D + T +I + L ++ + E+A +++ K+ K V+ +VT+L
Sbjct: 274 VDKNVWTWSAMI---VGLAQYGFAEEALQLFS---KMMKESSVRPNYVTFLGVLCACSHT 327
Query: 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648
++ + F E +KP+ + Y + + G A R + YD
Sbjct: 328 GLVDDGYKYFH---EMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYD 371
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 917 855 0.00083 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 626 (67 KB)
Total size of DFA: 433 KB (2205 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.12u 0.17s 74.29t Elapsed: 00:00:06
Total cpu time: 74.21u 0.17s 74.38t Elapsed: 00:00:06
Start: Tue May 21 04:46:59 2013 End: Tue May 21 04:47:05 2013