BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002477
(917 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 45/175 (25%)
Query: 23 NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAY---------------L 67
NP+ L W + + P K YER + P S + W Y L
Sbjct: 9 NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKL 68
Query: 68 IER--------------LSIVKNLPITHPEY-ETLNNTFERAL--VTMHKMP-RIWIMYL 109
+R LS V+ P Y E + ++ AL + M M +IW+ Y+
Sbjct: 69 FQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI 128
Query: 110 ETL---------TSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI 155
L + IT RR + R C P+ +++W Y ++ +EGI I
Sbjct: 129 NFLKGVEAVGSYAENQRITAVRRVYQRG-CVNPMINIEQLWRDYNKY--EEGINI 180
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 178 EFLVKSKLWQEAAERLASV-----LNDDQFYSI---KGKTKH-----RLWLELCDLLTTH 224
E L K K E + + SV LN D F + +G + L LELCD+ +
Sbjct: 276 EVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKN 335
Query: 225 ATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRREL 264
E GLN++ + + K +D + ++ SL +I+ EL
Sbjct: 336 EGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLP-LFIQFEL 374
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 775 EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANN 816
++L D + ID A+D ++AG+ ED A ER ++ NN
Sbjct: 140 QFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNN 181
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463
+TY + AV + WV KL E +K + + R F K + T+D L +
Sbjct: 108 VTYVHSTAGXGRAPAVALTYXFWVQGYKLXEAHKLLXSKRSCFPKLDAIRNATIDILTGL 167
Query: 464 WCEWAEMELRHKNF 477
+ + L+ K F
Sbjct: 168 KRKTVTLTLKDKGF 181
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 775 EYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANN 816
++L D + ID A++ ++AG+ ED A ER ++ NN
Sbjct: 140 QFLAPHDMKNVIDKAREAAREAGLSEDRFMACERGVSFGYNN 181
>pdb|2WAQ|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|Z Chain Z, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|H Chain H, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|Z Chain Z, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|H Chain H, Rnap At 3.2ang
pdb|4B1O|H Chain H, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|Z Chain Z, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 84
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 776 YLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAK 820
YL+ K + LSID+A LK+ G+ +++ + R P A + NAK
Sbjct: 15 YLVPKHEVLSIDEAYKILKELGIRPEQLPWI-RASDPVARSINAK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,295,865
Number of Sequences: 62578
Number of extensions: 1026606
Number of successful extensions: 2581
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 16
length of query: 917
length of database: 14,973,337
effective HSP length: 108
effective length of query: 809
effective length of database: 8,214,913
effective search space: 6645864617
effective search space used: 6645864617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)